BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13355
(314 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|399020746|ref|ZP_10722871.1| DNA polymerase III, beta subunit [Herbaspirillum sp. CF444]
gi|398093977|gb|EJL84349.1| DNA polymerase III, beta subunit [Herbaspirillum sp. CF444]
Length = 368
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 162/306 (52%), Positives = 236/306 (77%), Gaps = 2/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T+++ +L PLQ+V IVE+++ LPIL+NIL+ K+ EK+SFLSTD EVQITT+
Sbjct: 1 MQLV-KTQRDTLLRPLQIVSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHAE 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
VG G+ + VAARK +DILR+LP++ +VT+ + NK + ++SGKS+F LQTL A+E+P
Sbjct: 60 VGSGSEATATTVAARKLLDILRALPDSGEVTVTLSNKRLTVQSGKSRFALQTLAAEEFPT 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ Y+ + TL QKTLK + NMV+FS+AQQDIRYYLNGLLL + KN+IAV++DGHRL
Sbjct: 120 VAQAEHYNAQVTLPQKTLKHLFNMVHFSMAQQDIRYYLNGLLLVVEGKNVIAVATDGHRL 179
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ QV +++F ++IIPRKT+ LQRLL+ ++PV+L+I+NNQ+K+ F++IE+ISKL
Sbjct: 180 AFCQVATEQEFPR-QEVIIPRKTIIELQRLLDESDDPVQLEIANNQVKLTFADIELISKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF DY V+ Y+ +F + R +LLRSLQR +I+++DK KGVR VI P LKI+ ++
Sbjct: 239 VEGKFPDYTRVVPKGYKNNFTIGREQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISSTN 298
Query: 301 SNREKA 306
+++E+A
Sbjct: 299 ADQEEA 304
>gi|152980594|ref|YP_001351692.1| DNA polymerase III subunit beta [Janthinobacterium sp. Marseille]
gi|151280671|gb|ABR89081.1| DNA polymerase III beta subunit [Janthinobacterium sp. Marseille]
Length = 368
Score = 346 bits (887), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 161/306 (52%), Positives = 234/306 (76%), Gaps = 2/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T+++A+L PLQ+V IVE+++ LPIL+NIL+ K+ E++SFLSTD EVQITT+
Sbjct: 1 MQLV-KTQRDALLRPLQIVSGIVERRHTLPILANILIRKDGERVSFLSTDIEVQITTHAQ 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
VG GN + VAARK +DILR+LP++ V++ + NK M ++SGKS+F LQTL A+E+P
Sbjct: 60 VGSGNDVASTTVAARKLLDILRALPDSGDVSLTLANKRMTVQSGKSRFALQTLAAEEFPT 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ +Y+ + TL QKTLK + NMV+FS+AQQDIRYYLNGLLL KN+IAV++DGHRL
Sbjct: 120 VAQAEQYNAKVTLPQKTLKHLFNMVHFSMAQQDIRYYLNGLLLVVDGKNVIAVATDGHRL 179
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ QV +++F ++IIPRKT+ LQRLLE + PV+L+I+NNQ+K+ F +IE+ISKL
Sbjct: 180 AFCQVATEQEFPR-QEVIIPRKTIIELQRLLEENDQPVDLEIANNQVKLTFGDIELISKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF DY V+ Y+ +F + R+ LLRSLQR +I+++DK KGVR ++ P +KI+ ++
Sbjct: 239 VEGKFPDYTRVVPKGYKNNFTIGRDALLRSLQRAAIMTSDKFKGVRCIMSPGSMKISSTN 298
Query: 301 SNREKA 306
+++E+A
Sbjct: 299 ADQEEA 304
>gi|134093296|ref|YP_001098371.1| DNA polymerase III subunit beta [Herminiimonas arsenicoxydans]
gi|133737199|emb|CAL60242.1| DNA polymerase III, beta subunit [Herminiimonas arsenicoxydans]
Length = 368
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 160/306 (52%), Positives = 236/306 (77%), Gaps = 2/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T+++A+L PLQ+V IVE+++ LPIL+NIL+ K+ E++SFLSTD EVQITT+
Sbjct: 1 MQLV-KTQRDALLRPLQIVSGIVERRHTLPILANILIRKDGERVSFLSTDIEVQITTHAQ 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
VG GN + VAARK +DILR+LP++ V++ + NK M ++SGKS+F LQTL A+E+P
Sbjct: 60 VGSGNEIASTTVAARKLLDILRALPDSGDVSLTLANKRMTVQSGKSRFALQTLAAEEFPT 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ +Y+ + TL QKTLK + NMV+FS+AQQDIRYYLNGLLL KN+IAV++DGHRL
Sbjct: 120 VAQAEQYNAKVTLPQKTLKHLFNMVHFSMAQQDIRYYLNGLLLVVDGKNVIAVATDGHRL 179
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ QV +++F+ ++IIPRKT+ LQRLLE+ + PV+L+I+N+Q+K+ F +IE+ISKL
Sbjct: 180 AFCQVATEQEFAR-QEVIIPRKTIIELQRLLEDTDQPVDLEIANSQVKLTFGDIELISKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF DY V+ Y+ +F + R+ LLRSLQR +I+++DK KGVR ++ P +KI+ ++
Sbjct: 239 VEGKFPDYTRVVPKGYKNNFTIGRDALLRSLQRAAIMTSDKFKGVRCIMSPGSMKISSTN 298
Query: 301 SNREKA 306
+++E+A
Sbjct: 299 ADQEEA 304
>gi|398836813|ref|ZP_10594141.1| DNA polymerase III, beta subunit [Herbaspirillum sp. YR522]
gi|398210879|gb|EJM97513.1| DNA polymerase III, beta subunit [Herbaspirillum sp. YR522]
Length = 368
Score = 343 bits (880), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 160/306 (52%), Positives = 236/306 (77%), Gaps = 2/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T+++ +L PLQ+V IVE+++ +PIL+NIL+ K E++SFLSTD EVQITT+
Sbjct: 1 MQLV-KTQRDTLLRPLQIVSGIVERRHTMPILANILISKEGEQVSFLSTDIEVQITTHAE 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
VG G+ + I VAARK +DILR+LP++ +V+I + NK + ++SGKS+F LQTL A+E+PI
Sbjct: 60 VGAGSDAAKITVAARKLLDILRALPDSGEVSISLSNKRLTVQSGKSRFALQTLAAEEFPI 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
M +Y+ + L QKTLK + NMV+F++AQQDIRYYLNGLLL + KN+IAV++DGHRL
Sbjct: 120 MKEAEQYNAQVALPQKTLKHLFNMVHFAMAQQDIRYYLNGLLLVVEGKNVIAVATDGHRL 179
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ QV + +F ++IIPRKT+ LQRLL++ ++ V+L+I+NNQ+K+ F +IE+ISKL
Sbjct: 180 AFCQVVTEAEFPR-QEVIIPRKTIIELQRLLDDSDDEVKLEIANNQVKLSFGDIELISKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF DY VI + Y+ F ++R +LLRSLQR +I+++DK KGVR V+ P LKI+ ++
Sbjct: 239 VEGKFPDYTRVIPSGYKNGFTISREQLLRSLQRAAIMTSDKFKGVRWVVAPGSLKISSTN 298
Query: 301 SNREKA 306
+++E+A
Sbjct: 299 ADQEEA 304
>gi|340785199|ref|YP_004750664.1| DNA polymerase III subunit beta [Collimonas fungivorans Ter331]
gi|340550466|gb|AEK59841.1| DNA polymerase III beta subunit [Collimonas fungivorans Ter331]
Length = 368
Score = 342 bits (878), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 163/306 (53%), Positives = 231/306 (75%), Gaps = 2/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++ +L PLQ+V IVE+++ LPIL+NIL+ K EK+SFLSTD EVQITT
Sbjct: 1 MQLV-KTNRDTLLRPLQIVSGIVERRHTLPILANILIRKEGEKVSFLSTDIEVQITTNAK 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
VG G+ VAARK +DILR+LP+T +V++ + NK M ++SGKS+F LQTL A+E+P
Sbjct: 60 VGSGSEVAATTVAARKLLDILRALPDTGEVSLTLSNKRMTVQSGKSRFALQTLAAEEFPT 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ Y+ TL QKTLK + NMV+FS+AQQDIRYYLNGLLL KN+IAV++DGHRL
Sbjct: 120 VAQADHYNATVTLPQKTLKHLFNMVHFSMAQQDIRYYLNGLLLVLDGKNVIAVATDGHRL 179
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ QV +++F+ ++IIPRKT+ LQRLLE + PV+L+I+NNQ+K+ F++IE+ISKL
Sbjct: 180 AFCQVATEQEFAR-QEVIIPRKTIIELQRLLEETDEPVQLEIANNQVKLSFADIELISKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF DY V+ Y+ F ++R++LLRSLQR +I+++DK KGVR V+ P LKI+ ++
Sbjct: 239 VEGKFPDYTRVVPKGYKNDFTISRDQLLRSLQRAAIMTSDKFKGVRWVVTPGSLKISSTN 298
Query: 301 SNREKA 306
+++E+A
Sbjct: 299 ADQEEA 304
>gi|415952618|ref|ZP_11557186.1| DNA polymerase III, beta subunit [Herbaspirillum frisingense GSF30]
gi|407757355|gb|EKF67351.1| DNA polymerase III, beta subunit [Herbaspirillum frisingense GSF30]
Length = 368
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 160/306 (52%), Positives = 235/306 (76%), Gaps = 2/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T+++ +L PLQ+V IVE+++ LPIL+NIL+ K+ EK+SFLSTD EVQITT+
Sbjct: 1 MQLV-KTQRDTLLRPLQIVSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
VG G+ + VAARK +DILR+LP++ +V I + NK + ++SGKS+F LQTL A+E+P
Sbjct: 60 VGSGDETTATTVAARKLLDILRALPDSGEVAISLSNKRLTVQSGKSRFALQTLAAEEFPT 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ Y+ + L QKTLK + NMV+F++AQQDIRYYLNGLLL + KN+IAV++DGHRL
Sbjct: 120 VAQAEHYNAQVNLPQKTLKHLFNMVHFAMAQQDIRYYLNGLLLVVEGKNVIAVATDGHRL 179
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ QV ++ F ++IIPRKT+ LQRLL++ ++ V+L+I+NNQ+K+ F++IE+ISKL
Sbjct: 180 AFCQVETEQDFPR-QEVIIPRKTIIELQRLLDDSDDEVQLQIANNQVKLTFADIELISKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF DY V+ Y+ SF ++R++LLRSLQR +I+++DK KGVR VI P LKI+ ++
Sbjct: 239 VEGKFPDYTRVVPKGYKNSFTISRDQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISSTN 298
Query: 301 SNREKA 306
+++E+A
Sbjct: 299 ADQEEA 304
>gi|409408602|ref|ZP_11257037.1| DNA polymerase III subunit beta [Herbaspirillum sp. GW103]
gi|386431924|gb|EIJ44752.1| DNA polymerase III subunit beta [Herbaspirillum sp. GW103]
Length = 368
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 160/306 (52%), Positives = 235/306 (76%), Gaps = 2/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T+++ +L PLQ+V IVE+++ LPIL+NIL+ K+ EK+SFLSTD EVQITT+
Sbjct: 1 MQLV-KTQRDTLLRPLQIVSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
VG G+ + VAARK +DILR+LP++ +V I + NK + ++SGKS+F LQTL A+E+P
Sbjct: 60 VGSGSEATATTVAARKLLDILRALPDSGEVAISLSNKRLTVQSGKSRFALQTLAAEEFPT 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ +Y+ + L QKTLK + NMV+F++AQQDIRYYLNGLLL + KN+IAV++DGHRL
Sbjct: 120 VAQAEQYNAQVNLPQKTLKHLFNMVHFAMAQQDIRYYLNGLLLVVEGKNVIAVATDGHRL 179
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ QV ++ F ++IIPRKT+ LQRLL++ + V+L+I+NNQ+K+ F++IE+ISKL
Sbjct: 180 AFCQVETEEDFPR-QEVIIPRKTIIELQRLLDDSDEEVQLQIANNQVKLTFADIELISKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF DY V+ Y+ SF ++R++LLRSLQR +I+++DK KGVR VI P LKI+ ++
Sbjct: 239 VEGKFPDYTRVVPKGYKNSFTISRDQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISSTN 298
Query: 301 SNREKA 306
+++E+A
Sbjct: 299 ADQEEA 304
>gi|300309348|ref|YP_003773440.1| DNA polymerase III subunit beta [Herbaspirillum seropedicae SmR1]
gi|300072133|gb|ADJ61532.1| DNA polymerase III subunit beta protein [Herbaspirillum seropedicae
SmR1]
Length = 368
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 160/306 (52%), Positives = 235/306 (76%), Gaps = 2/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T+++ +L PLQ+V IVE+++ LPIL+NIL+ K+ EK+SFLSTD EVQITT+
Sbjct: 1 MQLV-KTQRDTLLRPLQIVSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
VG G+ + VAARK +DILR+LP++ +V+I + NK + ++SGKS+F LQTL A+E+P
Sbjct: 60 VGSGSEATATTVAARKLLDILRALPDSGEVSISLSNKRLTVQSGKSRFALQTLAAEEFPT 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ Y+ + L QKTLK + NMV+F++AQQDIRYYLNGLLL + KN+IAV++DGHRL
Sbjct: 120 VAQAEHYNAQVNLPQKTLKHLFNMVHFAMAQQDIRYYLNGLLLVVEGKNVIAVATDGHRL 179
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ QV ++ F ++IIPRKT+ LQRLL++ + V+L+I+NNQ+K+ F++IE+ISKL
Sbjct: 180 AFCQVETEEDFPR-QEVIIPRKTIIELQRLLDDSDEEVQLQIANNQVKLTFADIELISKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF DY V+ Y+ SF ++R++LLRSLQR +I+++DK KGVR VI P LKI+ ++
Sbjct: 239 VEGKFPDYTRVVPKGYKNSFTISRDQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISSTN 298
Query: 301 SNREKA 306
+++E+A
Sbjct: 299 ADQEEA 304
>gi|427400238|ref|ZP_18891476.1| DNA polymerase III, beta subunit [Massilia timonae CCUG 45783]
gi|425720978|gb|EKU83893.1| DNA polymerase III, beta subunit [Massilia timonae CCUG 45783]
Length = 368
Score = 337 bits (864), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 158/306 (51%), Positives = 229/306 (74%), Gaps = 2/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++ +L PLQ+V IVE+++ +PIL+NIL+ K E +SFLSTDTEVQITT+
Sbjct: 1 MQLV-KTTRDTLLRPLQIVSGIVERRHTMPILANILIRKTGESVSFLSTDTEVQITTHAN 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+G G+ VAARK +DILR+LPE+ VT+ ++NK + ++SGKS+F LQTL A+E+P
Sbjct: 60 IGSGDDVTGTTVAARKLLDILRALPESGDVTMTLQNKRLAVQSGKSRFALQTLAAEEFPT 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+++ Y+ TL QKTLK + NMVYFS+AQQDIRYYLNGLLL NIIAV++DGHRL
Sbjct: 120 VSVADSYNASVTLPQKTLKHLFNMVYFSMAQQDIRYYLNGLLLVLDGSNIIAVATDGHRL 179
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ QV +++F ++IIPRKT+ LQRLLE + V L I+ +Q+K+ F++IE++SKL
Sbjct: 180 AFCQVETEQQFER-QEVIIPRKTIIELQRLLEESDETVRLDIAASQVKLTFADIELVSKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF DY VI Y+ F ++R++LLRSLQR +I+++DK KGVR +I+P +KI+ ++
Sbjct: 239 VEGKFPDYTRVIPKGYKNDFTISRDELLRSLQRAAIMTSDKFKGVRCIIEPGVMKISSTN 298
Query: 301 SNREKA 306
+++E+A
Sbjct: 299 ADQEEA 304
>gi|395764323|ref|ZP_10444992.1| DNA polymerase III subunit beta [Janthinobacterium lividum PAMC
25724]
Length = 368
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 157/306 (51%), Positives = 227/306 (74%), Gaps = 2/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++ +L PLQ+V IVE+++ +PIL+NIL+ K+ E +SFLSTDTEVQITT+
Sbjct: 1 MQLV-KTTRDTLLRPLQIVSGIVERRHTMPILANILIRKDGENVSFLSTDTEVQITTHAQ 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+G G VAARK +DILR+LPE+ VT+ + NK + +++GKS+F LQTL A+E+P
Sbjct: 60 IGSGADVTGTTVAARKLLDILRALPESGDVTMTLLNKRLTVQTGKSRFALQTLAAEEFPT 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ Y+ TL QKTLK + NMV+FS+AQQDIRYYLNGLLL ++IAV++DGHRL
Sbjct: 120 VQQAESYNASVTLPQKTLKHLFNMVHFSMAQQDIRYYLNGLLLVLDGNHVIAVATDGHRL 179
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ QV ++ F+ ++IIPRKT+ LQRLLE + PV+L I+ NQ+K+ F++IE+ISKL
Sbjct: 180 AFCQVATEQTFAR-QEVIIPRKTIIELQRLLEENDEPVQLDIAANQVKLTFADIELISKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF DY VI Y+ F ++R++LLRSLQR +I+++DK KGVR +I P +KI+ ++
Sbjct: 239 VEGKFPDYTRVIPKGYKNDFTISRDELLRSLQRAAIMTSDKFKGVRCIITPGSMKISSTN 298
Query: 301 SNREKA 306
+++E+A
Sbjct: 299 ADQEEA 304
>gi|445499782|ref|ZP_21466637.1| DNA polymerase III beta subunit DnaN [Janthinobacterium sp. HH01]
gi|444789777|gb|ELX11325.1| DNA polymerase III beta subunit DnaN [Janthinobacterium sp. HH01]
Length = 368
Score = 330 bits (847), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 158/306 (51%), Positives = 223/306 (72%), Gaps = 2/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++ +L PLQ+V IVE+++ +PIL+NIL+ K E +SFLSTDTEVQITT
Sbjct: 1 MQLV-KTTRDTLLRPLQIVSGIVERRHTMPILANILIRKEGESVSFLSTDTEVQITTNAE 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+G G+ VAARK +DILR+LPE+ VT+ + NK + +++GKS+F LQTL A+E+P
Sbjct: 60 IGSGSEVTGTTVAARKLLDILRALPESGDVTMTLLNKRLTVQTGKSRFALQTLAAEEFPT 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ Y TL QKTLK + NMV+FS+AQQDIRYYLNGLLL KN+IAV++DGHRL
Sbjct: 120 VQQADSYSASVTLPQKTLKHLFNMVHFSMAQQDIRYYLNGLLLVLDGKNVIAVATDGHRL 179
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ QV ++ F ++IIPRKT+ LQRLLE + V+L I+ NQ+K+ F++IE+ISKL
Sbjct: 180 AFCQVETEQSFER-QEVIIPRKTIIELQRLLEENDETVQLDIAANQVKLTFADIELISKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF DY VI Y+ F + R++LLRSLQR +I+++DK KGVR +I P +KI+ ++
Sbjct: 239 VEGKFPDYTRVIPKGYKNEFTIGRDELLRSLQRAAIMTSDKFKGVRCIITPGSMKISSTN 298
Query: 301 SNREKA 306
+++E+A
Sbjct: 299 ADQEEA 304
>gi|83749734|ref|ZP_00946711.1| DNA polymerase III, beta chain [Ralstonia solanacearum UW551]
gi|207741916|ref|YP_002258308.1| dna polymerase III (beta chain) protein [Ralstonia solanacearum
IPO1609]
gi|421899508|ref|ZP_16329871.1| dna polymerase III (beta chain) protein [Ralstonia solanacearum
MolK2]
gi|83723586|gb|EAP70787.1| DNA polymerase III, beta chain [Ralstonia solanacearum UW551]
gi|206590714|emb|CAQ56326.1| dna polymerase III (beta chain) protein [Ralstonia solanacearum
MolK2]
gi|206593302|emb|CAQ60229.1| dna polymerase III (beta chain) protein [Ralstonia solanacearum
IPO1609]
Length = 371
Score = 317 bits (813), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 150/309 (48%), Positives = 224/309 (72%), Gaps = 5/309 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++ +L PLQ+V IVE+++ LPIL+N+L+ KN E++SFLSTD E+QITT+
Sbjct: 1 MQLV-KTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKNGERVSFLSTDIEIQITTHAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G GN I VAARK +DILR++P+ E VT+ + +K M ++SGKS+F LQTL A+E+P
Sbjct: 60 CGAGNGDIATTVAARKLVDILRAMPDGE-VTLTLNDKRMSVQSGKSRFALQTLAAEEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + TL QKTLK +L MV+F++AQQDIRYYLNG+LL K ++AV++DGHRL
Sbjct: 119 VAEANDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGKQVMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCS---DIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
Y V ++ + ++IIPRKT+ LQRLLE+ ++PV +++++NQ+K F NIE+I
Sbjct: 179 AYCGVETGEQPAGAGGRHEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTFGNIELI 238
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKL++GKF D++ VI Y SF ++R L ++LQR +I++ DK KGVR ++ N LKI+
Sbjct: 239 SKLVEGKFPDFQRVIPKGYRNSFTIDRTFLQQALQRTAILTTDKFKGVRCMLDTNVLKIS 298
Query: 298 VSSSNREKA 306
+++++E+A
Sbjct: 299 STNADQEEA 307
>gi|386331673|ref|YP_006027842.1| dna polymerase III (beta chain) protein [Ralstonia solanacearum
Po82]
gi|334194121|gb|AEG67306.1| dna polymerase III (beta chain) protein [Ralstonia solanacearum
Po82]
Length = 371
Score = 317 bits (812), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 150/309 (48%), Positives = 224/309 (72%), Gaps = 5/309 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++ +L PLQ+V IVE+++ LPIL+N+L+ KN E++SFLSTD E+QITT+
Sbjct: 1 MQLV-KTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKNGERVSFLSTDIEIQITTHAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G GN I VAARK +DILR++P+ E VT+ + +K M ++SGKS+F LQTL A+E+P
Sbjct: 60 CGAGNGDIATTVAARKLVDILRAMPDGE-VTLTLNDKRMSVQSGKSRFALQTLAAEEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + TL QKTLK +L MV+F++AQQDIRYYLNG+LL K ++AV++DGHRL
Sbjct: 119 VAEANDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGKQVMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCS---DIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
Y V ++ + ++IIPRKT+ LQRLLE+ ++PV +++++NQ+K F NIE+I
Sbjct: 179 AYCGVETGEQPAGAGGRHEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTFGNIELI 238
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKL++GKF D++ VI Y SF ++R L ++LQR +I++ DK KGVR ++ N LKI+
Sbjct: 239 SKLVEGKFPDFQRVIPKGYRNSFTIDRAFLQQALQRTAILTTDKFKGVRCMLDTNVLKIS 298
Query: 298 VSSSNREKA 306
+++++E+A
Sbjct: 299 STNADQEEA 307
>gi|300689716|ref|YP_003750711.1| DNA polymerase III, beta-subunit [Ralstonia solanacearum PSI07]
gi|299076776|emb|CBJ49383.1| DNA polymerase III, beta-subunit [Ralstonia solanacearum PSI07]
gi|344168581|emb|CCA80876.1| DNA polymerase III, beta-subunit [blood disease bacterium R229]
gi|344173148|emb|CCA88285.1| DNA polymerase III, beta-subunit [Ralstonia syzygii R24]
Length = 371
Score = 317 bits (812), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 150/309 (48%), Positives = 223/309 (72%), Gaps = 5/309 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++ +L PLQ+V IVE+++ LPIL+N+L+ KN E++SFLSTD E+QITT+
Sbjct: 1 MQLV-KTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKNGERVSFLSTDIEIQITTHAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G GN I VAARK +DILR++P+ E V + + +K M ++SGKS+F LQTL A+E+P
Sbjct: 60 CGAGNGDIATTVAARKLVDILRAMPDGE-VALTLNDKRMSVQSGKSRFALQTLAAEEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ S + TL QKTLK +L MV+F++AQQDIRYYLNG+LL K ++AV++DGHRL
Sbjct: 119 VAEASDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGKQVMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCS---DIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
Y V ++ + ++IIPRKT+ LQRLLE+ ++PV +++++NQ+K F NIE+I
Sbjct: 179 AYCGVETGEQPAGAGGRHEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTFGNIELI 238
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKL++GKF D++ VI Y SF ++R L ++LQR +I++ DK KGVR ++ N LKI+
Sbjct: 239 SKLVEGKFPDFQRVIPKGYRNSFTIDRAFLQQALQRTAILTTDKFKGVRCMLDTNVLKIS 298
Query: 298 VSSSNREKA 306
+++++E+A
Sbjct: 299 STNADQEEA 307
>gi|237749315|ref|ZP_04579795.1| DNA polymerase III subunit beta [Oxalobacter formigenes OXCC13]
gi|229380677|gb|EEO30768.1| DNA polymerase III subunit beta [Oxalobacter formigenes OXCC13]
Length = 368
Score = 317 bits (811), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 147/306 (48%), Positives = 222/306 (72%), Gaps = 2/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++ +L PLQ+V IVE+++ LPIL+NIL+ K E +SFLSTDTE+QI T+
Sbjct: 1 MQLV-KTGRDNLLRPLQIVSGIVERRHTLPILANILIRKEGEAVSFLSTDTEIQIVTHAE 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+G + VAARK +DILR+LP+T + I +K + +++GKS+F+LQTL A ++PI
Sbjct: 60 IGTNEENTTTTVAARKLLDILRALPDTSDIAISQNDKRLVVQAGKSRFSLQTLPADDFPI 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
++ ++Y+ T+SQK LK +L MVYFS+AQQDIRYYLNGLLL + AV++DGHRL
Sbjct: 120 VSQPAEYETSVTVSQKALKNLLGMVYFSMAQQDIRYYLNGLLLQVDGNKMTAVATDGHRL 179
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ Q+ D++FS +D+IIPRKT+ LQRLLE+ + PV + S Q++ +F ++E+ISKL
Sbjct: 180 AFCQMETDQEFSK-NDVIIPRKTILELQRLLEDSDEPVRIDFSGGQVRFVFGDVELISKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF DY VI Y+ F ++R +L R+LQR +I+++DK KG+R ++ P LKI+ ++
Sbjct: 239 VEGKFPDYTRVIPKGYKNKFTLSREQLQRALQRAAIMTSDKFKGIRCILAPGSLKISSTN 298
Query: 301 SNREKA 306
+++E+A
Sbjct: 299 ADQEEA 304
>gi|300702376|ref|YP_003743976.1| DNA polymerase III subunit beta [Ralstonia solanacearum CFBP2957]
gi|299070037|emb|CBJ41322.1| DNA polymerase III, beta-subunit [Ralstonia solanacearum CFBP2957]
Length = 371
Score = 316 bits (809), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 149/309 (48%), Positives = 224/309 (72%), Gaps = 5/309 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++ +L PLQ+V IVE+++ LPIL+N+L+ KN E++SFLSTD E+QITT+
Sbjct: 1 MQLV-KTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKNGERVSFLSTDIEIQITTHAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G GN I VAARK +DILR++P+ E V++ + +K M ++SGKS+F LQTL A+E+P
Sbjct: 60 CGAGNGDIATTVAARKLVDILRAMPDGE-VSLTLNDKRMSVQSGKSRFALQTLAAEEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + TL QKTLK +L MV+F++AQQDIRYYLNG+LL K ++AV++DGHRL
Sbjct: 119 VAEANDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGKQVMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCS---DIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
Y V ++ + ++IIPRKT+ LQRLLE+ ++PV +++++NQ+K F NIE+I
Sbjct: 179 AYCGVETGEQPAGAGGRHEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTFGNIELI 238
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKL++GKF D++ VI Y SF ++R L ++LQR +I++ DK KGVR ++ N LKI+
Sbjct: 239 SKLVEGKFPDFQRVIPKGYRNSFTIDRTFLQQALQRTAILTTDKFKGVRCMLDTNVLKIS 298
Query: 298 VSSSNREKA 306
+++++E+A
Sbjct: 299 STNADQEEA 307
>gi|421888933|ref|ZP_16320007.1| DNA polymerase III, beta-subunit [Ralstonia solanacearum K60-1]
gi|378965710|emb|CCF96755.1| DNA polymerase III, beta-subunit [Ralstonia solanacearum K60-1]
Length = 371
Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 149/309 (48%), Positives = 223/309 (72%), Gaps = 5/309 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++ +L PLQ+V IVE+++ LPIL+N+L+ KN E++SFLSTD E+QITT+
Sbjct: 1 MQLV-KTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKNGERVSFLSTDIEIQITTHAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G GN I VAARK +DILR++P+ E V + + +K M ++SGKS+F LQTL A+E+P
Sbjct: 60 CGAGNGDIATTVAARKLVDILRAMPDGE-VALTLNDKRMSVQSGKSRFALQTLAAEEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + TL QKTLK +L MV+F++AQQDIRYYLNG+LL K ++AV++DGHRL
Sbjct: 119 VAEANDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDSKQVMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCS---DIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
Y V ++ + ++IIPRKT+ LQRLLE+ ++PV +++++NQ+K F NIE+I
Sbjct: 179 AYCGVETGEQPAGAGGRHEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTFGNIELI 238
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKL++GKF D++ VI Y SF ++R L ++LQR +I++ DK KGVR ++ N LKI+
Sbjct: 239 SKLVEGKFPDFQRVIPKGYRNSFTIDRTFLQQALQRTAILTTDKFKGVRCMLDTNVLKIS 298
Query: 298 VSSSNREKA 306
+++++E+A
Sbjct: 299 STNADQEEA 307
>gi|17548158|ref|NP_521560.1| DNA polymerase III subunit beta [Ralstonia solanacearum GMI1000]
gi|17430465|emb|CAD16938.1| probable dna polymerase III (beta chain) protein [Ralstonia
solanacearum GMI1000]
Length = 371
Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 149/309 (48%), Positives = 223/309 (72%), Gaps = 5/309 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++ +L PLQ+V IVE+++ LPIL+N+L+ KN E++SFLSTD E+QITT+
Sbjct: 1 MQLV-KTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKNGERVSFLSTDIEIQITTHAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G GN I VAARK +DILR++P+ E V + + +K M ++SGKS+F LQTL A+E+P
Sbjct: 60 CGAGNGDIATTVAARKLVDILRAMPDGE-VALTLNDKRMSVQSGKSRFALQTLAAEEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + TL QKTLK +L MV+F++AQQDIRYYLNG+LL K ++AV++DGHRL
Sbjct: 119 VAEANDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGKQVMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCS---DIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
Y V ++ + ++IIPRKT+ LQRLLE+ ++PV +++++NQ+K F NIE+I
Sbjct: 179 AYCGVETGEQPAGAGGRHEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTFGNIELI 238
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKL++GKF D++ VI Y SF ++R L ++LQR +I++ DK KGVR ++ N LKI+
Sbjct: 239 SKLVEGKFPDFQRVIPKGYRNSFTIDRAFLQQALQRTAILTTDKFKGVRCMLDTNVLKIS 298
Query: 298 VSSSNREKA 306
+++++E+A
Sbjct: 299 STNADQEEA 307
>gi|299065056|emb|CBJ36217.1| DNA polymerase III, beta-subunit [Ralstonia solanacearum CMR15]
Length = 371
Score = 314 bits (804), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 148/309 (47%), Positives = 222/309 (71%), Gaps = 5/309 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++ +L PLQ+V IVE+++ LPIL+N+L+ KN E++SFLSTD E+QITT+
Sbjct: 1 MQLV-KTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKNGERVSFLSTDIEIQITTHAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G GN I VAARK +DILR++P+ E V + + +K M ++SGKS+F LQTL A+E+P
Sbjct: 60 CGAGNGDIATTVAARKLVDILRAMPDGE-VALTLNDKRMSVQSGKSRFALQTLAAEEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + TL QKTLK +L MV+F++AQQDIRYYLNG+LL K ++AV++DGHRL
Sbjct: 119 VAEANDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGKQVMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCS---DIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
Y V ++ + ++IIPRKT+ LQRLLE+ ++PV +++++NQ+K F NIE+I
Sbjct: 179 AYCGVETGEQPAGAGGRHEVIIPRKTILELQRLLEDIDDPVSVQLASNQVKFTFGNIELI 238
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKL++GKF D++ VI Y F ++R L ++LQR +I++ DK KGVR ++ N LKI+
Sbjct: 239 SKLVEGKFPDFQRVIPKGYRNGFTIDRAFLQQALQRTAILTTDKFKGVRCMLDTNVLKIS 298
Query: 298 VSSSNREKA 306
+++++E+A
Sbjct: 299 STNADQEEA 307
>gi|241661627|ref|YP_002979987.1| DNA polymerase III subunit beta [Ralstonia pickettii 12D]
gi|240863654|gb|ACS61315.1| DNA polymerase III, beta subunit [Ralstonia pickettii 12D]
Length = 371
Score = 313 bits (801), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 147/309 (47%), Positives = 221/309 (71%), Gaps = 5/309 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++ +L PLQ+V IVE+++ LPIL+N+L+ K E++SFLSTD E+QITT+
Sbjct: 1 MQLV-KTSRDNLLRPLQIVSGIVERRHTLPILANLLITKQGERVSFLSTDIEIQITTHAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G I VAARK +DILR++P+ E V + + +K M ++SGKS+F LQTL A+E+P
Sbjct: 60 CGAGAGDIATTVAARKLVDILRAMPDGE-VALTLNDKRMTVQSGKSRFALQTLAAEEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + TL QKTLK +L MV+F++AQQDIRYYLNG+LL K ++AV++DGHRL
Sbjct: 119 VAEATDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGKQVMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCS---DIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
Y V ++ + ++IIPRKT+ LQRLLE+ ++PV +++++NQ+K F NIE+I
Sbjct: 179 AYCGVETGEQPAGAGGRQEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTFGNIELI 238
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKL++GKF D++ VI Y SF ++R L ++LQR +I++ DK KGVR ++ N LKI+
Sbjct: 239 SKLVEGKFPDFQRVIPKGYRNSFTIDRAFLQQALQRTAILTTDKFKGVRCMLDTNVLKIS 298
Query: 298 VSSSNREKA 306
+++++E+A
Sbjct: 299 STNADQEEA 307
>gi|187927114|ref|YP_001897601.1| DNA polymerase III subunit beta [Ralstonia pickettii 12J]
gi|309780181|ref|ZP_07674932.1| DNA polymerase III, beta subunit [Ralstonia sp. 5_7_47FAA]
gi|404394779|ref|ZP_10986582.1| DNA polymerase III, beta subunit [Ralstonia sp. 5_2_56FAA]
gi|187724004|gb|ACD25169.1| DNA polymerase III, beta subunit [Ralstonia pickettii 12J]
gi|308920884|gb|EFP66530.1| DNA polymerase III, beta subunit [Ralstonia sp. 5_7_47FAA]
gi|348613844|gb|EGY63413.1| DNA polymerase III, beta subunit [Ralstonia sp. 5_2_56FAA]
Length = 371
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 146/309 (47%), Positives = 221/309 (71%), Gaps = 5/309 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++ +L PLQ+V IVE+++ LPIL+N+L+ K E++SFLSTD E+QITT+
Sbjct: 1 MQLV-KTSRDNLLRPLQIVSGIVERRHTLPILANLLITKQGERVSFLSTDIEIQITTHAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G + VAARK +DILR++P+ E V + + +K M ++SGKS+F LQTL A+E+P
Sbjct: 60 CGAGAGDVATTVAARKLVDILRAMPDGE-VALTLNDKRMTVQSGKSRFALQTLAAEEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + TL QKTLK +L MV+F++AQQDIRYYLNG+LL K ++AV++DGHRL
Sbjct: 119 VAEATDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGKQVMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCS---DIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
Y V ++ + ++IIPRKT+ LQRLLE+ ++PV +++++NQ+K F NIE+I
Sbjct: 179 AYCGVETGEQPAGAGGRQEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTFGNIELI 238
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKL++GKF D++ VI Y SF ++R L ++LQR +I++ DK KGVR ++ N LKI+
Sbjct: 239 SKLVEGKFPDFQRVIPKGYRNSFTIDRAFLQQALQRTAILTTDKFKGVRCMLDTNVLKIS 298
Query: 298 VSSSNREKA 306
+++++E+A
Sbjct: 299 STNADQEEA 307
>gi|329902528|ref|ZP_08273138.1| DNA polymerase III beta subunit [Oxalobacteraceae bacterium
IMCC9480]
gi|327548756|gb|EGF33395.1| DNA polymerase III beta subunit [Oxalobacteraceae bacterium
IMCC9480]
Length = 351
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 144/286 (50%), Positives = 215/286 (75%), Gaps = 1/286 (0%)
Query: 21 SIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDI 80
IVE+++ LPIL+NIL+ K+ +K+SFLSTD EVQITT+ V G VAARK +DI
Sbjct: 3 GIVERRHTLPILANILIRKDGDKVSFLSTDIEVQITTHITVDGGEELAATTVAARKLLDI 62
Query: 81 LRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKC 140
LR+LPE+ V++ + NK M ++SGKS+F LQTL A+E+P +T Y + +L QKTLK
Sbjct: 63 LRALPESGDVSLTLANKRMTVQSGKSRFALQTLAAEEFPTVTQAEHYSAQLSLPQKTLKH 122
Query: 141 ILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIP 200
+ NMV+FS+AQQDIRYYLNGLLL KN+IAV++DGHRL + QV +++F+ ++IIP
Sbjct: 123 LFNMVHFSMAQQDIRYYLNGLLLVVDGKNVIAVATDGHRLAFCQVETEQEFTR-QEVIIP 181
Query: 201 RKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVISNKYEKSF 260
RKT+ LQRLLE+ + V++ I+ NQ+K+ F++IE+ISKL++GKF DY V+ Y+ +F
Sbjct: 182 RKTIIELQRLLEDTDELVQIDIAPNQVKLTFADIELISKLVEGKFPDYTRVVPKGYKNNF 241
Query: 261 LVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ R++LLRSLQR +I+++DK KGVR ++ P +K++ +++++E++
Sbjct: 242 TLGRDQLLRSLQRAAIMTSDKFKGVRCIVTPGSMKVSSTNADQEES 287
>gi|237747156|ref|ZP_04577636.1| DNA polymerase III subunit beta [Oxalobacter formigenes HOxBLS]
gi|229378507|gb|EEO28598.1| DNA polymerase III subunit beta [Oxalobacter formigenes HOxBLS]
Length = 368
Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 146/306 (47%), Positives = 219/306 (71%), Gaps = 2/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++ +L PLQ+V IVE+++ LPIL+NIL+ K +SFLSTDTE+QI T+
Sbjct: 1 MQLV-KTGRDNLLRPLQIVSGIVERRHTLPILANILIRKEGNAVSFLSTDTEIQIVTHAE 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+G VAARK +DILR+LP++ ++ I + +K + + +GKS+F+LQTL A ++P
Sbjct: 60 IGTAEEDATTTVAARKLLDILRALPDSAEIAISLNDKRLVVSAGKSRFSLQTLPAADFPT 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
++ +Y TLSQK+LK +L MVYF++AQQDIRYYLNGLLL I AV++DGHRL
Sbjct: 120 VSQPLEYQTSVTLSQKSLKNLLGMVYFAMAQQDIRYYLNGLLLQTGGNTIKAVATDGHRL 179
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ Q+ +++FS+ +D+IIPRKT+ LQRLLE E PV + IS Q++ +F ++E+ISKL
Sbjct: 180 AFCQMETEQEFSN-NDVIIPRKTILELQRLLEESEEPVRIDISGAQVRFVFGDVELISKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF DY VI Y+ F ++R L R+LQR +I+++DK KG+R ++ P LKI+ ++
Sbjct: 239 VEGKFPDYTRVIPKGYKNKFTISRELLQRALQRAAIMTSDKFKGIRCILAPGSLKISSTN 298
Query: 301 SNREKA 306
+++E+A
Sbjct: 299 ADQEEA 304
>gi|73539708|ref|YP_294228.1| DNA polymerase III subunit beta [Ralstonia eutropha JMP134]
gi|72117121|gb|AAZ59384.1| DNA polymerase III, beta subunit [Ralstonia eutropha JMP134]
Length = 371
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 143/309 (46%), Positives = 227/309 (73%), Gaps = 5/309 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++ +L PLQ+V IVE+++ LPIL+N+L+ K+ +SFLSTD E+QITT+
Sbjct: 1 MQLV-KTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKSGSNVSFLSTDIEIQITTHAE 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G GN S+ VAARK +DILR++P+ + V + + +K M ++SGKS+F LQTL A+E+P
Sbjct: 60 CGVGNDSVATTVAARKLLDILRAMPDGD-VALSLNDKRMTVQSGKSRFALQTLAAEEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ S+++ +L QKT K +L MV+F++AQQDIRYYLNG+LL K ++AV++DGHRL
Sbjct: 119 VAEASEFNASVSLPQKTFKHLLAMVHFAMAQQDIRYYLNGMLLVVDGKKVMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCS---DIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
Y V ++ + + ++IIPRKT+ LQRLLE+ ++PV+++++ NQ+K F+NIE+I
Sbjct: 179 AYCGVELENEATGVGSRQEVIIPRKTILELQRLLEDNDDPVQVQLAANQVKFSFANIELI 238
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKL++GKF D++ VI Y+ +F ++R +L ++LQR +I++ DK KGVR ++ + LKI+
Sbjct: 239 SKLVEGKFPDFQRVIPKGYKNAFAIDRVRLQQALQRTAILTTDKFKGVRCILDTHMLKIS 298
Query: 298 VSSSNREKA 306
+++++E+A
Sbjct: 299 STNADQEEA 307
>gi|393775034|ref|ZP_10363348.1| dna polymerase beta subunit [Ralstonia sp. PBA]
gi|392717611|gb|EIZ05171.1| dna polymerase beta subunit [Ralstonia sp. PBA]
Length = 369
Score = 306 bits (785), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 144/307 (46%), Positives = 219/307 (71%), Gaps = 3/307 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++ +L PLQ+V IVE+++ LPIL+N+L+ K +SFLSTD E+QITT+
Sbjct: 1 MQLV-KTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKTGPTVSFLSTDIEIQITTHAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G ++ VAARK +DILR++P+ E V + + +K M ++SGKS+F LQTL E+P
Sbjct: 60 CGVGGENVATTVAARKLLDILRAMPDGE-VALSLNDKRMTVQSGKSRFALQTLAPDEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+T + Y + L QKTLK +L MV+F++AQQDIRYYLNG+LL K ++AV++DGHRL
Sbjct: 119 VTEATDYGAQIALPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGKKVMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSC-SDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
Y V + ++IIPRKT+ LQRLL+ ++PV+L+++ NQ+K F+N+E+ISK
Sbjct: 179 AYCAVETETATGGARQEVIIPRKTILELQRLLDESDDPVQLQLAANQVKFSFANVELISK 238
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
L++GKF D++ VI Y+ +FLV R L ++LQR +I+++DK KGVR ++ N LK++ +
Sbjct: 239 LVEGKFPDFQRVIPKGYKNTFLVERVALQQALQRTAILTSDKFKGVRCMLDTNILKVSST 298
Query: 300 SSNREKA 306
++++E+A
Sbjct: 299 NADQEEA 305
>gi|374369988|ref|ZP_09628004.1| DNA polymerase III subunit beta [Cupriavidus basilensis OR16]
gi|373098473|gb|EHP39578.1| DNA polymerase III subunit beta [Cupriavidus basilensis OR16]
Length = 374
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 146/308 (47%), Positives = 222/308 (72%), Gaps = 10/308 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++ +L PLQ+V IVE+++ LPIL+N+L+ K+ +SFLSTD E+QITT+
Sbjct: 1 MQLV-KTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKSGSNVSFLSTDIEIQITTHAE 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G+ ++ VAARK +DILR++P+ E V + + +K M ++SGKS+F LQTL A+E+P
Sbjct: 60 CGVGSDTVATTVAARKLLDILRAMPDGE-VALSLNDKRMTVQSGKSRFALQTLAAEEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ S++ +L QKT K +L MV+F++AQQDIRYYLNG+LL K ++AV++DGHRL
Sbjct: 119 VAEASEFGASVSLPQKTFKHLLAMVHFAMAQQDIRYYLNGMLLVVDGKKVMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCS------DIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNI 234
Y V +D + +S ++IIPRKT+ LQRLLE+ ++PV+++++ NQ+K F+NI
Sbjct: 179 AYCGVELDTEATSGEAAPARQEVIIPRKTILELQRLLEDNDDPVQVQLAANQVKFTFANI 238
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
E+ISKL++GKF D++ VI Y+ +F ++R KL ++LQR +I++ DK KGVR ++ + L
Sbjct: 239 ELISKLVEGKFPDFQRVIPKGYKNAFAIDRVKLQQALQRTAILTTDKFKGVRCILDTHVL 298
Query: 295 KITVSSSN 302
KI SS+N
Sbjct: 299 KI--SSTN 304
>gi|209515896|ref|ZP_03264758.1| DNA polymerase III, beta subunit [Burkholderia sp. H160]
gi|209503744|gb|EEA03738.1| DNA polymerase III, beta subunit [Burkholderia sp. H160]
Length = 367
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 142/306 (46%), Positives = 215/306 (70%), Gaps = 3/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ KN +SFLSTD E+QITT
Sbjct: 1 MQLV-KTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G S+ VAARK +DILR++PE + VT+ + +K + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGGDSVATTVAARKLLDILRAMPEGQ-VTLTLNDKRLTVQSGKSRFALQTLAADEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ Y + QKT + +L MV+FS+AQQDIRYYLNG+LL ++AV++DGHRL
Sbjct: 119 VAQAKDYGASLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGDQLMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + I+ F+ ++IIPRKT+ LQRLLE+ ++ V++ I+ Q+K F +E++SKL
Sbjct: 179 AFSSMKIEGSFAR-QEVIIPRKTILELQRLLEDIDDTVKIDIAQTQVKFTFGQVELVSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D++ VI ++ FL+ R +L RSLQR +I+++DK KGVR +++P LKI ++
Sbjct: 238 VEGKFPDFQRVIPKSHKNKFLIGREELQRSLQRAAILTSDKFKGVRCIVEPGQLKIMSTN 297
Query: 301 SNREKA 306
+++E+A
Sbjct: 298 ADQEEA 303
>gi|188590797|ref|YP_001795397.1| DNA polymerase III subunit beta [Cupriavidus taiwanensis LMG 19424]
gi|170937691|emb|CAP62675.1| DNA polymerase III, beta-subunit [Cupriavidus taiwanensis LMG
19424]
Length = 371
Score = 303 bits (776), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 144/305 (47%), Positives = 222/305 (72%), Gaps = 7/305 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++ +L PLQ+V IVE+++ LPIL+N+L+ K+ +SFLSTD E+QITT+
Sbjct: 1 MQLV-KTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKSGSNVSFLSTDIEIQITTHAE 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G GN S+ VAARK +DILR++P+ + V + + +K M ++SGKS+F LQTL A+E+P
Sbjct: 60 CGVGNDSVATTVAARKLLDILRAMPDGD-VALSLNDKRMTVQSGKSRFALQTLAAEEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ S+++ +L QKT K +L MV+F++AQQDIRYYLNG+LL + K ++AV++DGHRL
Sbjct: 119 VAEASEFNASVSLPQKTFKHLLAMVHFAMAQQDIRYYLNGMLLVVEGKKVMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCS---DIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
Y V ++ + + ++IIPRKT+ LQRLLE+ ++PV ++++ NQ+K F+NIE+I
Sbjct: 179 AYCGVELENEAAGVGSRQEVIIPRKTILELQRLLEDNDDPVTVQLAANQVKFTFANIELI 238
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKL++GKF D++ VI Y+ +F ++R +L ++LQR +I++ DK KGVR ++ + LKI
Sbjct: 239 SKLVEGKFPDFQRVIPKGYKNAFAIDRVQLQQALQRTAILTTDKFKGVRCILDTHMLKI- 297
Query: 298 VSSSN 302
SS+N
Sbjct: 298 -SSTN 301
>gi|312794751|ref|YP_004027673.1| DNA polymerase III subunit beta [Burkholderia rhizoxinica HKI 454]
gi|312166526|emb|CBW73529.1| DNA polymerase III, beta chain (EC 2.7.7.7) [Burkholderia
rhizoxinica HKI 454]
Length = 401
Score = 303 bits (776), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 138/306 (45%), Positives = 215/306 (70%), Gaps = 3/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ KN +SFLSTD E+QITT
Sbjct: 34 MQLV-KTERDTLLRPLQTVSGIVERRHTLPILANLLISKNGPDVSFLSTDLELQITTRAD 92
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G GN + VAARK +DILR++P + VT+ + +K + ++SGKS+F LQTL A E+P
Sbjct: 93 FGIGNEQVATTVAARKLVDILRAMPIGD-VTLTLSDKRLTVQSGKSRFALQTLAADEFPT 151
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + ++ QKT K +L MV+F++AQQDIRYYLNG+LL ++AV++DGHRL
Sbjct: 152 LAQAKDFGANLSVPQKTFKQLLGMVHFAMAQQDIRYYLNGMLLVVDGDQLMAVATDGHRL 211
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + D F+ ++IIPRKT+ LQRLLE+ ++P+ + I++ Q+K F +E++SKL
Sbjct: 212 AFSSMKTDGAFAR-QEVIIPRKTILELQRLLEDIDDPLTIDIASTQVKFTFGQVELVSKL 270
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D++ VI ++ +F++ R++L SLQR +I+++DK KGVR ++ P LKI ++
Sbjct: 271 VEGKFPDFQRVIPKGHKNTFMIGRDELQHSLQRAAILTSDKFKGVRCIVAPGQLKIMSTN 330
Query: 301 SNREKA 306
+++E+A
Sbjct: 331 ADQEEA 336
>gi|339324160|ref|YP_004683853.1| DNA polymerase III subunit beta [Cupriavidus necator N-1]
gi|338164317|gb|AEI75372.1| DNA polymerase III subunit beta [Cupriavidus necator N-1]
Length = 371
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 144/305 (47%), Positives = 223/305 (73%), Gaps = 7/305 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++ +L PLQ+V IVE+++ LPIL+N+L+ K+ +SFLSTD E+QITT+
Sbjct: 1 MQLV-KTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKSGSNVSFLSTDIEIQITTHAE 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G+ SI VAARK +DILR++P+ + V + + +K M ++SGKS+F LQTL A+E+P
Sbjct: 60 CGVGSDSIATTVAARKLLDILRAMPDGD-VALSLNDKRMTVQSGKSRFALQTLAAEEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ S+++ +L QKT K +L MV+F++AQQDIRYYLNG+LL + K ++AV++DGHRL
Sbjct: 119 VAEASEFNASVSLPQKTFKHLLAMVHFAMAQQDIRYYLNGMLLVVEGKKVMAVATDGHRL 178
Query: 181 TYYQVNIDKK---FSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
Y V ++ + + ++IIPRKT+ LQRLLE+ ++PV+++++ NQ+K F+NIE+I
Sbjct: 179 AYCGVELETEAVGVGARQEVIIPRKTILELQRLLEDNDDPVQVQLAANQVKFTFANIELI 238
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKL++GKF D++ VI Y+ +F ++R +L ++LQR +I++ DK KGVR ++ + LKI
Sbjct: 239 SKLVEGKFPDFQRVIPKGYKNAFAIDRVRLQQALQRTAILTTDKFKGVRCILDTHMLKI- 297
Query: 298 VSSSN 302
SS+N
Sbjct: 298 -SSTN 301
>gi|113866033|ref|YP_724522.1| DNA polymerase III subunit beta [Ralstonia eutropha H16]
gi|113524809|emb|CAJ91154.1| DNA polymerase III beta subunit [Ralstonia eutropha H16]
Length = 371
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 143/305 (46%), Positives = 223/305 (73%), Gaps = 7/305 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++ +L PLQ+V IVE+++ LPIL+N+L+ K+ +SFLSTD E+QITT+
Sbjct: 1 MQLV-KTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKSGSNVSFLSTDIEIQITTHAE 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G+ S+ VAARK +DILR++P+ + V + + +K M ++SGKS+F LQTL A+E+P
Sbjct: 60 CGVGSDSVATTVAARKLLDILRAMPDGD-VALSLNDKRMTVQSGKSRFALQTLAAEEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ S+++ +L QKT K +L MV+F++AQQDIRYYLNG+LL + K ++AV++DGHRL
Sbjct: 119 VAEASEFNASVSLPQKTFKHLLAMVHFAMAQQDIRYYLNGMLLVVEGKKVMAVATDGHRL 178
Query: 181 TYYQVNIDKK---FSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
Y V ++ + + ++IIPRKT+ LQRLLE+ ++PV+++++ NQ+K F+NIE+I
Sbjct: 179 AYCGVELETEAVGVGARQEVIIPRKTILELQRLLEDNDDPVQVQLAANQVKFTFANIELI 238
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKL++GKF D++ VI Y+ +F ++R +L ++LQR +I++ DK KGVR ++ + LKI
Sbjct: 239 SKLVEGKFPDFQRVIPKGYKNAFAIDRVRLQQALQRTAILTTDKFKGVRCILDTHMLKI- 297
Query: 298 VSSSN 302
SS+N
Sbjct: 298 -SSTN 301
>gi|323524379|ref|YP_004226532.1| DNA polymerase III subunit beta [Burkholderia sp. CCGE1001]
gi|407711775|ref|YP_006832340.1| DNA polymerase III subunit beta [Burkholderia phenoliruptrix
BR3459a]
gi|323381381|gb|ADX53472.1| DNA polymerase III, beta subunit [Burkholderia sp. CCGE1001]
gi|407233959|gb|AFT84158.1| DNA polymerase III subunit beta [Burkholderia phenoliruptrix
BR3459a]
Length = 367
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 140/306 (45%), Positives = 215/306 (70%), Gaps = 3/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ KN +SFLSTD E+QITT
Sbjct: 1 MQLV-KTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G S+ VAARK +DILR++P+ + VT+ + +K + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGGESVATTVAARKLLDILRAMPDGQ-VTLTLNDKRLTVQSGKSRFALQTLAADEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ Y + QKT + +L MV+FS+AQQDIRYYLNG+LL ++AV++DGHRL
Sbjct: 119 VAQAKDYGASLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGDQLMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + I+ F+ ++IIPRKT+ LQRLLE+ ++ +++ I+ Q+K F +E++SKL
Sbjct: 179 AFSSMKIEGSFAR-QEVIIPRKTILELQRLLEDIDDTLKIDIAQTQVKFTFGQVELVSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D++ VI ++ F++ R +L RSLQR +I+++DK KGVR +I+P LKI ++
Sbjct: 238 VEGKFPDFQRVIPKSHKNQFVIGREELQRSLQRAAILTSDKFKGVRCIIEPGQLKIMSTN 297
Query: 301 SNREKA 306
+++E+A
Sbjct: 298 ADQEEA 303
>gi|94308947|ref|YP_582157.1| DNA polymerase III subunit beta [Cupriavidus metallidurans CH34]
gi|430809715|ref|ZP_19436830.1| DNA polymerase III subunit beta [Cupriavidus sp. HMR-1]
gi|93352799|gb|ABF06888.1| DNA polymerase III, beta subunit [Cupriavidus metallidurans CH34]
gi|429497862|gb|EKZ96382.1| DNA polymerase III subunit beta [Cupriavidus sp. HMR-1]
Length = 371
Score = 300 bits (769), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 142/305 (46%), Positives = 222/305 (72%), Gaps = 7/305 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++ +L PLQ+V IVE+++ LPIL+N+L+ K+ +SFLSTD E+QITT+
Sbjct: 1 MQLV-KTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKSGSNVSFLSTDIEIQITTHAE 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G+ S+ VAARK +DILR++P+ + V + + +K M ++SGKS+F LQTL A+E+P
Sbjct: 60 CGVGSDSVATTVAARKLLDILRAMPDGD-VALSLNDKRMTVQSGKSRFALQTLAAEEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ ++++ +L QKT K +L MV+F++AQQDIRYYLNG+LL K ++AV++DGHRL
Sbjct: 119 VAEAAEFNASVSLPQKTFKHLLAMVHFAMAQQDIRYYLNGMLLVVDGKKVMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCS---DIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
Y V ++ + + ++IIPRKT+ LQRLLE+ ++PV+++++ NQ+K F+NIE+I
Sbjct: 179 AYCGVELENEATGVGSRQEVIIPRKTILELQRLLEDTDDPVQVQLAANQVKFTFANIELI 238
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKL++GKF D++ VI Y+ +F ++R +L ++LQR +I++ DK KGVR ++ + LKI
Sbjct: 239 SKLVEGKFPDFQRVIPKGYKNAFAIDRVQLQQALQRTAILTTDKFKGVRCILDTHVLKI- 297
Query: 298 VSSSN 302
SS+N
Sbjct: 298 -SSTN 301
>gi|307728078|ref|YP_003905302.1| DNA polymerase III subunit beta [Burkholderia sp. CCGE1003]
gi|307582613|gb|ADN56011.1| DNA polymerase III, beta subunit [Burkholderia sp. CCGE1003]
Length = 367
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 139/306 (45%), Positives = 215/306 (70%), Gaps = 3/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ KN +SFLSTD E+QITT
Sbjct: 1 MQLV-KTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G ++ VAARK +DILR++P+ + VT+ + +K + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGGETVATTVAARKLLDILRAMPDGQ-VTLTLNDKRLTVQSGKSRFALQTLAADEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ Y + QKT + +L MV+FS+AQQDIRYYLNG+LL ++AV++DGHRL
Sbjct: 119 VAQAKDYGASLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGDQLMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + I+ F+ ++IIPRKT+ LQRLLE+ ++ +++ I+ Q+K F +E++SKL
Sbjct: 179 AFSSMKIEGSFAR-QEVIIPRKTILELQRLLEDIDDTLKIDIAQTQVKFTFGQVELVSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D++ VI ++ F++ R +L RSLQR +I+++DK KGVR +I+P LKI ++
Sbjct: 238 VEGKFPDFQRVIPKSHKNQFVIGREELQRSLQRAAILTSDKFKGVRCIIEPGQLKIMSTN 297
Query: 301 SNREKA 306
+++E+A
Sbjct: 298 ADQEEA 303
>gi|91781386|ref|YP_556592.1| DNA polymerase III subunit beta [Burkholderia xenovorans LB400]
gi|187922037|ref|YP_001893679.1| DNA polymerase III subunit beta [Burkholderia phytofirmans PsJN]
gi|385207762|ref|ZP_10034630.1| DNA polymerase III, beta subunit [Burkholderia sp. Ch1-1]
gi|91685340|gb|ABE28540.1| DNA polymerase III, beta subunit [Burkholderia xenovorans LB400]
gi|187713231|gb|ACD14455.1| DNA polymerase III, beta subunit [Burkholderia phytofirmans PsJN]
gi|385180100|gb|EIF29376.1| DNA polymerase III, beta subunit [Burkholderia sp. Ch1-1]
Length = 367
Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 140/306 (45%), Positives = 214/306 (69%), Gaps = 3/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ KN +SFLSTD E+QITT
Sbjct: 1 MQLV-KTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G S+ VAARK +DILR++P+ + VT+ + +K + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGGDSVATTVAARKLLDILRAMPDGQ-VTLTLNDKRLTVQSGKSRFALQTLAADEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ Y + QKT + +L MV+FS+AQQDIRYYLNG+LL ++AV++DGHRL
Sbjct: 119 VAQAKDYGANLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGDQLMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + I+ F ++IIPRKT+ LQRLLE+ ++ +++ I+ Q+K F +E++SKL
Sbjct: 179 AFSSMKIEGSFQR-QEVIIPRKTILELQRLLEDIDDTLKIDIAQTQVKFTFGQVELVSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D++ VI ++ F++ R +L RSLQR +I+++DK KGVR +I+P LKI ++
Sbjct: 238 VEGKFPDFQRVIPKSHKNQFVIGREELQRSLQRAAILTSDKFKGVRCIIEPGQLKIMSTN 297
Query: 301 SNREKA 306
+++E+A
Sbjct: 298 ADQEEA 303
>gi|170694068|ref|ZP_02885224.1| DNA polymerase III, beta subunit [Burkholderia graminis C4D1M]
gi|170141140|gb|EDT09312.1| DNA polymerase III, beta subunit [Burkholderia graminis C4D1M]
Length = 367
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 139/306 (45%), Positives = 215/306 (70%), Gaps = 3/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ KN +SFLSTD E+QITT
Sbjct: 1 MQLV-KTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G ++ VAARK +DILR++P+ + VT+ + +K + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGGDTVATTVAARKLLDILRAMPDGQ-VTLTLNDKRLTVQSGKSRFALQTLAADEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ Y + QKT + +L MV+FS+AQQDIRYYLNG+LL ++AV++DGHRL
Sbjct: 119 VAQAKDYGANLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGDQLMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + I+ F+ ++IIPRKT+ LQRLLE+ ++ +++ I+ Q+K F +E++SKL
Sbjct: 179 AFSSMKIEGSFAR-QEVIIPRKTILELQRLLEDIDDTLKIDIAQTQVKFTFGQVELVSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D++ VI ++ F++ R +L RSLQR +I+++DK KGVR +I+P LKI ++
Sbjct: 238 VEGKFPDFQRVIPKSHKNQFVIGREELQRSLQRAAILTSDKFKGVRCIIEPGQLKIMSTN 297
Query: 301 SNREKA 306
+++E+A
Sbjct: 298 ADQEEA 303
>gi|186474775|ref|YP_001856245.1| DNA polymerase III subunit beta [Burkholderia phymatum STM815]
gi|184191234|gb|ACC69199.1| DNA polymerase III, beta subunit [Burkholderia phymatum STM815]
Length = 367
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 138/306 (45%), Positives = 216/306 (70%), Gaps = 3/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ KN +SFLSTD E+QITT
Sbjct: 1 MQLV-KTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G S+ VAARK +DILR++P+ + VT+ + +K + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGGESVATTVAARKLLDILRAMPDGQ-VTLTLNDKRLTVQSGKSRFALQTLAADEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + QKT + +L MV+F++AQQDIRYYLNG+LL ++AV++DGHRL
Sbjct: 119 VAQAKDFGANLAVPQKTFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGDQLMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
Y + I+ F+ ++IIPRKT+ LQRLLE+ ++ +++ I+ Q+K F +E++SKL
Sbjct: 179 AYSSMKIEGSFAR-QEVIIPRKTILELQRLLEDIDDVLKIDIAPTQVKFTFGGVELVSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D++ VI ++ +F++ R +L RSLQR +I+++DK KGVR +++P LKI ++
Sbjct: 238 VEGKFPDFQRVIPKSHKNTFVIGREELQRSLQRAAILTSDKFKGVRCIVEPGQLKIMSTN 297
Query: 301 SNREKA 306
+++E+A
Sbjct: 298 ADQEEA 303
>gi|83720585|ref|YP_443734.1| DNA polymerase III subunit beta [Burkholderia thailandensis E264]
gi|167582969|ref|ZP_02375843.1| DNA polymerase III subunit beta [Burkholderia thailandensis TXDOH]
gi|167620900|ref|ZP_02389531.1| DNA polymerase III subunit beta [Burkholderia thailandensis Bt4]
gi|83654410|gb|ABC38473.1| DNA polymerase III, beta subunit [Burkholderia thailandensis E264]
Length = 367
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 138/306 (45%), Positives = 212/306 (69%), Gaps = 3/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ KN +SFLSTD E+QITT
Sbjct: 1 MQLV-KTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G + VAARK +DILR++P+ + VT+ + +K + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGGDQVATTVAARKLLDILRAMPDGQ-VTLSLADKRLTVQSGKSRFALQTLAADEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + + QK + +L MVYF++AQQDIRYYLNG+LL ++AV++DGHRL
Sbjct: 119 VAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGDRLMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + I+ FS ++I+PRKT+ LQRLLE+ ++ V++ I+ Q K F +E++SKL
Sbjct: 179 AFSSMKIEGSFSR-QEVIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVELVSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D++ VI ++ +F + R +L RSLQR +I+++DK KGVR +I P LKI ++
Sbjct: 238 VEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIMSTN 297
Query: 301 SNREKA 306
+++E+A
Sbjct: 298 ADQEEA 303
>gi|167560989|ref|ZP_02353905.1| DNA polymerase III subunit beta [Burkholderia oklahomensis EO147]
gi|167568253|ref|ZP_02361127.1| DNA polymerase III subunit beta [Burkholderia oklahomensis C6786]
Length = 367
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 138/306 (45%), Positives = 212/306 (69%), Gaps = 3/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ KN +SFLSTD E+QITT
Sbjct: 1 MQLV-KTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G + VAARK +DILR++P+ + VT+ + +K + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGGDQVATTVAARKLLDILRAMPDGQ-VTLTLADKRLTVQSGKSRFALQTLAADEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + ++ QK + +L MVYF++AQQDIRYYLNG+LL +++AV++DGHRL
Sbjct: 119 VAQAKDFGASLSVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGDSLMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + I+ F ++I+PRKT+ LQRLLE+ ++ V++ I+ Q K F +E++SKL
Sbjct: 179 AFSSMKIEGAFPR-QEVIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVELVSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D++ VI ++ SF + R +L RSLQR +I+++DK KGVR +I P LKI ++
Sbjct: 238 VEGKFPDFQRVIPKAHKNSFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIMSTN 297
Query: 301 SNREKA 306
+++E+A
Sbjct: 298 ADQEEA 303
>gi|161523182|ref|YP_001578194.1| DNA polymerase III subunit beta [Burkholderia multivorans ATCC
17616]
gi|189348957|ref|YP_001944585.1| DNA polymerase III subunit beta [Burkholderia multivorans ATCC
17616]
gi|221201813|ref|ZP_03574850.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD2M]
gi|221207681|ref|ZP_03580689.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD2]
gi|221214573|ref|ZP_03587543.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD1]
gi|421469623|ref|ZP_15918069.1| DNA polymerase III, beta subunit [Burkholderia multivorans ATCC
BAA-247]
gi|421479682|ref|ZP_15927361.1| DNA polymerase III, beta subunit [Burkholderia multivorans CF2]
gi|56798247|dbj|BAD82890.1| DnaN [Burkholderia multivorans]
gi|160340611|gb|ABX13697.1| DNA polymerase III, beta subunit [Burkholderia multivorans ATCC
17616]
gi|189332979|dbj|BAG42049.1| DNA polymerase III, beta chain [Burkholderia multivorans ATCC
17616]
gi|221165463|gb|EED97939.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD1]
gi|221172527|gb|EEE04966.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD2]
gi|221178233|gb|EEE10643.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD2M]
gi|400222555|gb|EJO52926.1| DNA polymerase III, beta subunit [Burkholderia multivorans CF2]
gi|400229410|gb|EJO59260.1| DNA polymerase III, beta subunit [Burkholderia multivorans ATCC
BAA-247]
Length = 368
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 136/306 (44%), Positives = 211/306 (68%), Gaps = 2/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ KN +SFLSTD E+QITT
Sbjct: 1 MQLV-KTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G+ + VAARK +DILR++P+ + VT+ + +K + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGSDQVATTVAARKLLDILRAMPDGQ-VTLSLADKRLTVQSGKSRFALQTLAADEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + T+ QK+ + +L MV+F++AQQDIRYYLNG+LL ++AV++DGHRL
Sbjct: 119 VAQAKDFGASLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGDQLMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + ID ++I+PRKT+ LQRLLE+ ++ V + I+ Q K F +E++SKL
Sbjct: 179 AFSSMKIDGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVELVSKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D++ VI ++ +F + R +L RSLQR +I+++DK KGVR ++ P LKI ++
Sbjct: 239 VEGKFPDFQRVIPKAHKNTFQIGREELQRSLQRAAILTSDKFKGVRCIVAPGQLKIMSTN 298
Query: 301 SNREKA 306
+++E+A
Sbjct: 299 ADQEEA 304
>gi|377819446|ref|YP_004975817.1| DNA polymerase III subunit beta [Burkholderia sp. YI23]
gi|357934281|gb|AET87840.1| DNA polymerase III subunit beta [Burkholderia sp. YI23]
Length = 367
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 144/308 (46%), Positives = 218/308 (70%), Gaps = 7/308 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ KN +SFLSTD E+QITT
Sbjct: 1 MQLV-KTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGADVSFLSTDLELQITTRAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G+ + VAARK +DILR++P E V + + +K + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGSDQVATTVAARKLLDILRAMPSGE-VVLDLSDKRLTVRSGKSRFALQTLAADEFP- 117
Query: 121 MTLNSKYDFEFTLS--QKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGH 178
T+N DF +LS QKT + +L MVYF++AQQDIRYYLNG+LL ++AV++DGH
Sbjct: 118 -TVNQATDFGASLSVPQKTFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGDQLMAVATDGH 176
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL + + I+ F+ ++IIPRKT+ LQRLLE+ ++ +++ I+ Q+K F +E++S
Sbjct: 177 RLAFSSMKIEGSFAR-QEVIIPRKTILELQRLLEDIDDELKIDIAATQVKFSFGQVELVS 235
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KL++GKF D++ VI ++ SF + R +L RSLQR +I+++DK KGVR +++P LKI
Sbjct: 236 KLVEGKFPDFQRVIPKAHKNSFEIGREELQRSLQRAAILTSDKFKGVRCLVEPGQLKIMS 295
Query: 299 SSSNREKA 306
+++++E+A
Sbjct: 296 TNADQEEA 303
>gi|295675103|ref|YP_003603627.1| DNA polymerase III subunit beta [Burkholderia sp. CCGE1002]
gi|295434946|gb|ADG14116.1| DNA polymerase III, beta subunit [Burkholderia sp. CCGE1002]
Length = 367
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 139/306 (45%), Positives = 213/306 (69%), Gaps = 3/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ KN +SFLSTD E+QITT
Sbjct: 1 MQLV-KTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G S+ VAARK +DILR++P+ + VT+ + +K + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGGDSVATTVAARKLLDILRAMPDGQ-VTLTLNDKRLTVQSGKSRFALQTLAADEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ Y + QKT + +L MV+FS+AQQDIRYYLNG+LL ++AV++DGHRL
Sbjct: 119 VAQAKDYGASLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGDQLMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + I+ F+ ++IIPRKT+ LQRLLE+ ++ + + I+ Q+K F +E++SKL
Sbjct: 179 AFSSMKIEGSFAR-QEVIIPRKTILELQRLLEDIDDTLNIDIAQTQVKFTFGQVELVSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D++ VI ++ F + R +L RSLQR +I+++DK KGVR +++P LKI ++
Sbjct: 238 VEGKFPDFQRVIPKSHKNKFQIGREELQRSLQRAAILTSDKFKGVRCIVEPGQLKIMSTN 297
Query: 301 SNREKA 306
+++E+A
Sbjct: 298 ADQEEA 303
>gi|390569557|ref|ZP_10249842.1| DNA polymerase III subunit beta [Burkholderia terrae BS001]
gi|420253413|ref|ZP_14756467.1| DNA polymerase III, beta subunit [Burkholderia sp. BT03]
gi|389938417|gb|EIN00261.1| DNA polymerase III subunit beta [Burkholderia terrae BS001]
gi|398052215|gb|EJL44499.1| DNA polymerase III, beta subunit [Burkholderia sp. BT03]
Length = 367
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 137/306 (44%), Positives = 216/306 (70%), Gaps = 3/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ KN +SFLSTD E+QITT
Sbjct: 1 MQLV-KTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G S+ VAARK +DILR++P+ + VT+ + +K + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGGDSVATTVAARKLLDILRAMPDGQ-VTLTLNDKRLTVQSGKSRFALQTLAADEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + QKT + +L MV+F++AQQDIRYYLNG+LL ++AV++DGHRL
Sbjct: 119 VAQAKDFGANLAVPQKTFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGDQLMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + I+ F+ ++IIPRKT+ LQRLLE+ ++ +++ I+ Q+K F +E++SKL
Sbjct: 179 AFSSMKIEGSFAR-QEVIIPRKTILELQRLLEDIDDVLKIDIAPTQVKFTFGGVELVSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D++ VI ++ +F++ R +L RSLQR +I+++DK KGVR +++P LKI ++
Sbjct: 238 VEGKFPDFQRVIPKSHKNTFVIGREELQRSLQRAAILTSDKFKGVRCIVEPGQLKIMSTN 297
Query: 301 SNREKA 306
+++E+A
Sbjct: 298 ADQEEA 303
>gi|167834928|ref|ZP_02461811.1| DNA polymerase III subunit beta [Burkholderia thailandensis MSMB43]
gi|424901667|ref|ZP_18325183.1| DNA polymerase III subunit beta [Burkholderia thailandensis MSMB43]
gi|390932042|gb|EIP89442.1| DNA polymerase III subunit beta [Burkholderia thailandensis MSMB43]
Length = 367
Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 137/306 (44%), Positives = 211/306 (68%), Gaps = 3/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ KN +SFLSTD E+QITT
Sbjct: 1 MQLV-KTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G + VAARK +DILR++P+ + VT+ + +K + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGGDQVATTVAARKLLDILRAMPDGQ-VTLSLADKRLTVQSGKSRFALQTLAADEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + + QK + +L MVYF++AQQDIRYYLNG+LL ++AV++DGHRL
Sbjct: 119 VAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGDRLMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + I+ F ++I+PRKT+ LQRLLE+ ++ V++ I+ Q K F +E++SKL
Sbjct: 179 AFSSMKIEGAFGR-QEVIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVELVSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D++ VI ++ +F + R +L RSLQR +I+++DK KGVR +I P LKI ++
Sbjct: 238 VEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIMSTN 297
Query: 301 SNREKA 306
+++E+A
Sbjct: 298 ADQEEA 303
>gi|126451494|ref|YP_001064387.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 1106a]
gi|242316207|ref|ZP_04815223.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1106b]
gi|386860202|ref|YP_006273151.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 1026b]
gi|418537430|ref|ZP_13103070.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 1026a]
gi|126225136|gb|ABN88676.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1106a]
gi|242139446|gb|EES25848.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1106b]
gi|385350139|gb|EIF56691.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 1026a]
gi|385657330|gb|AFI64753.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 1026b]
Length = 367
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 137/306 (44%), Positives = 212/306 (69%), Gaps = 3/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ KN +SFLSTD E+QITT
Sbjct: 1 MQLV-KTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G + VAARK +DILR++P+ + VT+ + +K + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGGDQVATTVAARKLLDILRAMPDGQ-VTLSLADKRLTVQSGKSRFALQTLAADEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + + QK + +L MVYF++AQQDIRYYLNG+LL +++AV++DGHRL
Sbjct: 119 VAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGDSLMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + I+ F ++I+PRKT+ LQRLLE+ ++ V++ I+ Q K F +E++SKL
Sbjct: 179 AFSSMKIEGSFGR-QEVIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVELVSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D++ VI ++ +F + R +L RSLQR +I+++DK KGVR +I P LKI ++
Sbjct: 238 VEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIMSTN 297
Query: 301 SNREKA 306
+++E+A
Sbjct: 298 ADQEEA 303
>gi|53717713|ref|YP_106699.1| DNA polymerase III subunit beta [Burkholderia pseudomallei K96243]
gi|53724902|ref|YP_101863.1| DNA polymerase III subunit beta [Burkholderia mallei ATCC 23344]
gi|67642368|ref|ZP_00441125.1| DNA polymerase III, beta subunit [Burkholderia mallei GB8 horse 4]
gi|76811898|ref|YP_331716.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 1710b]
gi|121599744|ref|YP_994143.1| DNA polymerase III subunit beta [Burkholderia mallei SAVP1]
gi|124384769|ref|YP_001028200.1| DNA polymerase III subunit beta [Burkholderia mallei NCTC 10229]
gi|126438733|ref|YP_001057143.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 668]
gi|126448071|ref|YP_001079585.1| DNA polymerase III subunit beta [Burkholderia mallei NCTC 10247]
gi|134281596|ref|ZP_01768304.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 305]
gi|167001181|ref|ZP_02266980.1| DNA polymerase III, beta subunit [Burkholderia mallei PRL-20]
gi|167717461|ref|ZP_02400697.1| DNA polymerase III subunit beta [Burkholderia pseudomallei DM98]
gi|167736496|ref|ZP_02409270.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 14]
gi|167813574|ref|ZP_02445254.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 91]
gi|167822115|ref|ZP_02453586.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 9]
gi|167843720|ref|ZP_02469228.1| DNA polymerase III subunit beta [Burkholderia pseudomallei B7210]
gi|167892199|ref|ZP_02479601.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 7894]
gi|167900711|ref|ZP_02487916.1| DNA polymerase III subunit beta [Burkholderia pseudomallei NCTC
13177]
gi|167908928|ref|ZP_02496019.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 112]
gi|167916969|ref|ZP_02504060.1| DNA polymerase III subunit beta [Burkholderia pseudomallei BCC215]
gi|217423948|ref|ZP_03455448.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 576]
gi|226193089|ref|ZP_03788699.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei
Pakistan 9]
gi|237814479|ref|YP_002898930.1| DNA polymerase III subunit beta [Burkholderia pseudomallei MSHR346]
gi|254175303|ref|ZP_04881964.1| DNA polymerase III, beta subunit [Burkholderia mallei ATCC 10399]
gi|254184147|ref|ZP_04890738.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1655]
gi|254186618|ref|ZP_04893135.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei Pasteur
52237]
gi|254194524|ref|ZP_04900955.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei S13]
gi|254201968|ref|ZP_04908332.1| DNA polymerase III, beta subunit [Burkholderia mallei FMH]
gi|254207300|ref|ZP_04913651.1| DNA polymerase III, beta subunit [Burkholderia mallei JHU]
gi|254259557|ref|ZP_04950611.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1710a]
gi|254298587|ref|ZP_04966038.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 406e]
gi|254359609|ref|ZP_04975880.1| DNA polymerase III, beta subunit [Burkholderia mallei 2002721280]
gi|418375499|ref|ZP_12965579.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 354a]
gi|418539569|ref|ZP_13105160.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 1258a]
gi|418545729|ref|ZP_13110976.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 1258b]
gi|418552143|ref|ZP_13117035.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 354e]
gi|52208127|emb|CAH34057.1| DNA polymerase III, beta chain [Burkholderia pseudomallei K96243]
gi|52428325|gb|AAU48918.1| DNA polymerase III, beta subunit [Burkholderia mallei ATCC 23344]
gi|76581351|gb|ABA50826.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1710b]
gi|121228554|gb|ABM51072.1| DNA polymerase III, beta subunit [Burkholderia mallei SAVP1]
gi|124292789|gb|ABN02058.1| DNA polymerase III, beta subunit [Burkholderia mallei NCTC 10229]
gi|126218226|gb|ABN81732.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 668]
gi|126240941|gb|ABO04034.1| DNA polymerase III, beta subunit [Burkholderia mallei NCTC 10247]
gi|134247263|gb|EBA47349.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 305]
gi|147747862|gb|EDK54938.1| DNA polymerase III, beta subunit [Burkholderia mallei FMH]
gi|147752842|gb|EDK59908.1| DNA polymerase III, beta subunit [Burkholderia mallei JHU]
gi|148028823|gb|EDK86755.1| DNA polymerase III, beta subunit [Burkholderia mallei 2002721280]
gi|157808569|gb|EDO85739.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 406e]
gi|157934303|gb|EDO89973.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei Pasteur
52237]
gi|160696348|gb|EDP86318.1| DNA polymerase III, beta subunit [Burkholderia mallei ATCC 10399]
gi|169651274|gb|EDS83967.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei S13]
gi|184214679|gb|EDU11722.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1655]
gi|217393011|gb|EEC33033.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 576]
gi|225934689|gb|EEH30666.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei
Pakistan 9]
gi|237506469|gb|ACQ98787.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei
MSHR346]
gi|238523507|gb|EEP86945.1| DNA polymerase III, beta subunit [Burkholderia mallei GB8 horse 4]
gi|243063008|gb|EES45194.1| DNA polymerase III, beta subunit [Burkholderia mallei PRL-20]
gi|254218246|gb|EET07630.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1710a]
gi|385364323|gb|EIF70041.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 1258a]
gi|385366392|gb|EIF72014.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 1258b]
gi|385373604|gb|EIF78620.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 354e]
gi|385378287|gb|EIF82762.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 354a]
Length = 367
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 137/306 (44%), Positives = 211/306 (68%), Gaps = 3/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ KN +SFLSTD E+QITT
Sbjct: 1 MQLV-KTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G + VAARK +DILR++P+ + VT+ + +K + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGGDQVATTVAARKLLDILRAMPDGQ-VTLSLADKRLTVQSGKSRFALQTLAADEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + + QK + +L MVYF++AQQDIRYYLNG+LL ++AV++DGHRL
Sbjct: 119 VAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGDRLMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + I+ F ++I+PRKT+ LQRLLE+ ++ V++ I+ Q K F +E++SKL
Sbjct: 179 AFSSMKIEGSFGR-QEVIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVELVSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D++ VI ++ +F + R +L RSLQR +I+++DK KGVR +I P LKI ++
Sbjct: 238 VEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIMSTN 297
Query: 301 SNREKA 306
+++E+A
Sbjct: 298 ADQEEA 303
>gi|444372850|ref|ZP_21172274.1| DNA polymerase III, beta subunit [Burkholderia cenocepacia
K56-2Valvano]
gi|443592720|gb|ELT61503.1| DNA polymerase III, beta subunit [Burkholderia cenocepacia
K56-2Valvano]
Length = 368
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 136/306 (44%), Positives = 211/306 (68%), Gaps = 2/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ KN +SFLSTD E+QITT
Sbjct: 1 MQLV-KTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G I VAARK +DILR++P+ + VT+ + +K + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGGDQIATTVAARKLLDILRAMPDGQ-VTLSLADKRLTVQSGKSRFALQTLAADEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + T+ QK+ + +L MV+F++AQQDIRYYLNG+LL ++AV++DGHRL
Sbjct: 119 VAQAKDFGATLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGDQLMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + ++ ++I+PRKT+ LQRLLE+ ++ V + I+ Q K+ F +E++SKL
Sbjct: 179 AFSSMKLEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKVTFGQVELVSKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D++ VI ++ +F + R +L RSLQR +I+++DK KGVR +I P LKI ++
Sbjct: 239 VEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIMSTN 298
Query: 301 SNREKA 306
+++E+A
Sbjct: 299 ADQEEA 304
>gi|350546026|ref|ZP_08915454.1| DNA polymerase III beta subunit [Candidatus Burkholderia kirkii
UZHbot1]
gi|350526203|emb|CCD41070.1| DNA polymerase III beta subunit [Candidatus Burkholderia kirkii
UZHbot1]
Length = 367
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 144/308 (46%), Positives = 216/308 (70%), Gaps = 7/308 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ KN +SFLSTD E+QITT
Sbjct: 1 MQLV-KTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGADVSFLSTDLELQITTRAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G GN + VAARK +DILR++P E V + + +K + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGNDQVATTVAARKLLDILRAMPSGE-VVLDLSDKRLTVRSGKSRFALQTLAADEFP- 117
Query: 121 MTLNSKYDFEFTLS--QKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGH 178
T+N DF +LS QKT + +L MVYF++AQQDIRYYLNG+LL ++ V++DGH
Sbjct: 118 -TVNQAADFGASLSVPQKTFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGDQLMVVATDGH 176
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL + + I+ F ++IIPRKT+ LQRLLE+ +N +++ I+ Q+K F +E++S
Sbjct: 177 RLAFSSMKIEGSFPR-QEVIIPRKTILELQRLLEDIDNELKIDIAATQVKFSFGQVELVS 235
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KL++GKF D++ VI ++ +F + R +L RSLQR +I+++DK KGVR +++P LKI
Sbjct: 236 KLVEGKFPDFQRVIPKSHKNTFEIGREELQRSLQRAAILTSDKFKGVRCLVEPGQLKIMS 295
Query: 299 SSSNREKA 306
+++++E+A
Sbjct: 296 TNADQEEA 303
>gi|167589704|ref|ZP_02382092.1| DNA polymerase III subunit beta [Burkholderia ubonensis Bu]
Length = 368
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 136/306 (44%), Positives = 211/306 (68%), Gaps = 2/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ KN +SFLSTD E+QITT
Sbjct: 1 MQLV-KTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGADVSFLSTDLELQITTRAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G GN + VAARK +DILR++P+ + VT+ + +K + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGNDQVATTVAARKLLDILRAMPDGQ-VTLSLADKRLTVQSGKSRFALQTLAADEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + ++ QK+ + +L MV+F++AQQDIRYYLNG+LL ++AV++DGHRL
Sbjct: 119 VAQAKDFGASLSVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGDQLMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + I+ ++I+PRKT+ LQRLLE+ ++ V + I+ Q K F +E++SKL
Sbjct: 179 AFSSMKIEGGAFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVELVSKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D++ VI ++ +F + R +L RSLQR +I+++DK KGVR +I P LKI ++
Sbjct: 239 VEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIMSTN 298
Query: 301 SNREKA 306
+++E+A
Sbjct: 299 ADQEEA 304
>gi|330814958|ref|YP_004358663.1| DNA polymerase III subunit beta [Burkholderia gladioli BSR3]
gi|327367351|gb|AEA58707.1| DNA polymerase III, beta subunit [Burkholderia gladioli BSR3]
Length = 368
Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 136/306 (44%), Positives = 209/306 (68%), Gaps = 2/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ K +SFLSTD E+QITT
Sbjct: 1 MQLV-KTERDTLLRPLQTVSGIVERRHTLPILANLLITKTGSDVSFLSTDLELQITTRAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G + VAARK +DILR++P+ + VT+ + +K + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGGEQVATTVAARKLLDILRAMPDGQ-VTLSLADKRLTVQSGKSRFALQTLAADEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + + QK + +L MVYF++AQQDIRYYLNG+LL ++AV++DGHRL
Sbjct: 119 VAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGDQLMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
Y + I+ ++I+PRKT+ LQRLLE+ ++ V++ I+ Q K F +E++SKL
Sbjct: 179 AYSSMKIEGGAFPRQEVIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVELVSKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D++ VI ++ +F + R +L RSLQR +I+++DK KGVR +I P LKI ++
Sbjct: 239 VEGKFPDFQRVIPKAHKNTFTIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIMSTN 298
Query: 301 SNREKA 306
+++E+A
Sbjct: 299 ADQEEA 304
>gi|238025686|ref|YP_002909917.1| DNA polymerase III subunit beta [Burkholderia glumae BGR1]
gi|237874880|gb|ACR27213.1| DNA polymerase III, beta subunit [Burkholderia glumae BGR1]
Length = 368
Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 136/306 (44%), Positives = 208/306 (67%), Gaps = 2/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ K +SFLSTD E+QITT
Sbjct: 1 MQLV-KTERDTLLRPLQTVSGIVERRHTLPILANLLITKTGSDVSFLSTDLELQITTRAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G + VAARK +DILR++P+ + VT+ + +K + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGGEQVATTVAARKLLDILRAMPDGQ-VTLSLADKRLTVQSGKSRFALQTLAADEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + + QK + +L MVYF++AQQDIRYYLNG+LL ++AV++DGHRL
Sbjct: 119 VAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGDQLMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
Y + ID ++I+PRKT+ LQRLLE+ ++ V + I+ Q K F +E++SKL
Sbjct: 179 AYSSMKIDGGTFPRQEVIVPRKTILELQRLLEDIDDVVNIDIAQTQAKFTFGQVELVSKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D++ VI ++ +F + R +L RSLQR +I+++DK KGVR ++ P LKI ++
Sbjct: 239 VEGKFPDFQRVIPKAHKNTFTIGREELQRSLQRAAILTSDKFKGVRCIVAPGQLKIMSTN 298
Query: 301 SNREKA 306
+++E+A
Sbjct: 299 ADQEEA 304
>gi|107024099|ref|YP_622426.1| DNA polymerase III subunit beta [Burkholderia cenocepacia AU 1054]
gi|116688026|ref|YP_833649.1| DNA polymerase III subunit beta [Burkholderia cenocepacia HI2424]
gi|170731358|ref|YP_001763305.1| DNA polymerase III subunit beta [Burkholderia cenocepacia MC0-3]
gi|206558824|ref|YP_002229584.1| DNA polymerase III subunit beta [Burkholderia cenocepacia J2315]
gi|421870346|ref|ZP_16301979.1| DNA polymerase III beta subunit [Burkholderia cenocepacia H111]
gi|444364925|ref|ZP_21165172.1| DNA polymerase III, beta subunit [Burkholderia cenocepacia BC7]
gi|105894288|gb|ABF77453.1| DNA polymerase III, beta subunit [Burkholderia cenocepacia AU 1054]
gi|116646115|gb|ABK06756.1| DNA polymerase III, beta subunit [Burkholderia cenocepacia HI2424]
gi|169814600|gb|ACA89183.1| DNA polymerase III, beta subunit [Burkholderia cenocepacia MC0-3]
gi|198034861|emb|CAR50733.1| DNA polymerase III, beta chain [Burkholderia cenocepacia J2315]
gi|358069694|emb|CCE52857.1| DNA polymerase III beta subunit [Burkholderia cenocepacia H111]
gi|443591907|gb|ELT60757.1| DNA polymerase III, beta subunit [Burkholderia cenocepacia BC7]
Length = 368
Score = 296 bits (758), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 136/306 (44%), Positives = 210/306 (68%), Gaps = 2/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ KN +SFLSTD E+QITT
Sbjct: 1 MQLV-KTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G I VAARK +DILR++P+ + VT+ + +K + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGGDQIATTVAARKLLDILRAMPDGQ-VTLSLADKRLTVQSGKSRFALQTLAADEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + T+ QK+ + +L MV+F++AQQDIRYYLNG+LL ++AV++DGHRL
Sbjct: 119 VAQAKDFGATLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGDQLMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + ++ ++I+PRKT+ LQRLLE+ ++ V + I+ Q K F +E++SKL
Sbjct: 179 AFSSMKLEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVELVSKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D++ VI ++ +F + R +L RSLQR +I+++DK KGVR +I P LKI ++
Sbjct: 239 VEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIMSTN 298
Query: 301 SNREKA 306
+++E+A
Sbjct: 299 ADQEEA 304
>gi|413963959|ref|ZP_11403186.1| DNA polymerase III subunit beta [Burkholderia sp. SJ98]
gi|413929791|gb|EKS69079.1| DNA polymerase III subunit beta [Burkholderia sp. SJ98]
Length = 367
Score = 296 bits (757), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 143/308 (46%), Positives = 217/308 (70%), Gaps = 7/308 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ KN +SFLSTD E+QITT
Sbjct: 1 MQLV-KTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGADVSFLSTDLELQITTRAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G+ + VAARK +DILR++P E V + + +K + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGSDQVATTVAARKLLDILRAMPSGE-VVLDLSDKRLTVRSGKSRFALQTLAADEFP- 117
Query: 121 MTLNSKYDFEFTLS--QKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGH 178
T+N DF +LS QKT + +L MVYF++AQQDIRYYLNG+LL ++AV++DGH
Sbjct: 118 -TVNQATDFGASLSVPQKTFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGDQLMAVATDGH 176
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL + + I+ F ++IIPRKT+ LQRLLE+ ++ +++ I+ Q+K F +E++S
Sbjct: 177 RLAFSSMKIEGSFPR-QEVIIPRKTILELQRLLEDIDDSLKIDIAATQVKFSFGQVELVS 235
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KL++GKF D++ VI ++ +F + R +L RSLQR +I+++DK KGVR +++P LKI
Sbjct: 236 KLVEGKFPDFQRVIPKSHKNTFEIGREELQRSLQRAAILTSDKFKGVRCLVEPGQLKIMS 295
Query: 299 SSSNREKA 306
+++++E+A
Sbjct: 296 TNADQEEA 303
>gi|171316344|ref|ZP_02905564.1| DNA polymerase III, beta subunit [Burkholderia ambifaria MEX-5]
gi|171098473|gb|EDT43275.1| DNA polymerase III, beta subunit [Burkholderia ambifaria MEX-5]
Length = 368
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 135/306 (44%), Positives = 210/306 (68%), Gaps = 2/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ KN +SFLSTD E+QITT
Sbjct: 1 MQLV-KTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G + VAARK +DILR++P+ + VT+ + +K + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGGDQVATTVAARKLLDILRAMPDGQ-VTLSLADKRLTVQSGKSRFALQTLAADEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + T+ QK+ + +L MV+F++AQQDIRYYLNG+LL ++AV++DGHRL
Sbjct: 119 VAQAKDFGATLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGDQLMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + ++ ++I+PRKT+ LQRLLE+ ++ V + I+ Q K F +E++SKL
Sbjct: 179 AFSSMKLEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVELVSKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D++ VI ++ +F + R +L RSLQR +I+++DK KGVR +I P LKI ++
Sbjct: 239 VEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIMSTN 298
Query: 301 SNREKA 306
+++E+A
Sbjct: 299 ADQEEA 304
>gi|78064660|ref|YP_367429.1| DNA polymerase III subunit beta [Burkholderia sp. 383]
gi|115350058|ref|YP_771897.1| DNA polymerase III subunit beta [Burkholderia ambifaria AMMD]
gi|170697755|ref|ZP_02888842.1| DNA polymerase III, beta subunit [Burkholderia ambifaria IOP40-10]
gi|172059069|ref|YP_001806721.1| DNA polymerase III subunit beta [Burkholderia ambifaria MC40-6]
gi|402565065|ref|YP_006614410.1| DNA polymerase III subunit beta [Burkholderia cepacia GG4]
gi|77965405|gb|ABB06785.1| DNA polymerase III, beta subunit [Burkholderia sp. 383]
gi|115280046|gb|ABI85563.1| DNA polymerase III, beta subunit [Burkholderia ambifaria AMMD]
gi|170137370|gb|EDT05611.1| DNA polymerase III, beta subunit [Burkholderia ambifaria IOP40-10]
gi|171991586|gb|ACB62505.1| DNA polymerase III, beta subunit [Burkholderia ambifaria MC40-6]
gi|402246262|gb|AFQ46716.1| DNA polymerase III subunit beta [Burkholderia cepacia GG4]
Length = 368
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 135/306 (44%), Positives = 210/306 (68%), Gaps = 2/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ KN +SFLSTD E+QITT
Sbjct: 1 MQLV-KTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G + VAARK +DILR++P+ + VT+ + +K + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGGDQVATTVAARKLLDILRAMPDGQ-VTLSLADKRLTVQSGKSRFALQTLAADEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + T+ QK+ + +L MV+F++AQQDIRYYLNG+LL ++AV++DGHRL
Sbjct: 119 VAQAKDFGATLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGDQLMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + ++ ++I+PRKT+ LQRLLE+ ++ V + I+ Q K F +E++SKL
Sbjct: 179 AFSSMKLEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVELVSKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D++ VI ++ +F + R +L RSLQR +I+++DK KGVR +I P LKI ++
Sbjct: 239 VEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIMSTN 298
Query: 301 SNREKA 306
+++E+A
Sbjct: 299 ADQEEA 304
>gi|393758325|ref|ZP_10347148.1| DNA polymerase III subunit beta [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
gi|393165113|gb|EJC65163.1| DNA polymerase III subunit beta [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
Length = 369
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 142/306 (46%), Positives = 214/306 (69%), Gaps = 2/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++A+L PL V+ IVE+++ LPIL+NIL+ KN +SFL+TD EVQITT
Sbjct: 1 MQLVQAT-RDALLKPLSTVVGIVERRHTLPILANILLRKNGSDVSFLATDLEVQITTNAG 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G + VAARK +DIL++LP+ V + +++ + I+SGKS+F LQTL+A ++P+
Sbjct: 60 FGVGEDNAATTVAARKLLDILKALPDFGDVRLGLDSGKLTIQSGKSRFQLQTLEAADFPV 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+TL ++D ++ Q+TLK + N V+F++AQQDIRYYLNG+LL F+ + V++DGHRL
Sbjct: 120 LTLPEQWDVSLSMPQRTLKHLFNTVHFAMAQQDIRYYLNGMLLVFEPGMVRTVTTDGHRL 179
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ ID DII+PRKTV +QRLL + ++ V + +S+ QI+ F ++E+ISKL
Sbjct: 180 AHNATAID-GVQERHDIIVPRKTVLEMQRLLGDTDDLVNIDVSSRQIRFRFGDVELISKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D+ VI + Y + F V+R+ L SLQR +I++ DKL+GVRL + N LKI+ S+
Sbjct: 239 VEGKFPDFARVIPSNYTRHFDVSRDVLQGSLQRAAILTTDKLRGVRLQLSQNQLKISASN 298
Query: 301 SNREKA 306
+ +E+A
Sbjct: 299 AEQEEA 304
>gi|254251051|ref|ZP_04944369.1| DNA polymerase sliding clamp subunit [Burkholderia dolosa AUO158]
gi|124893660|gb|EAY67540.1| DNA polymerase sliding clamp subunit [Burkholderia dolosa AUO158]
Length = 368
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 134/306 (43%), Positives = 210/306 (68%), Gaps = 2/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ KN +SFLSTD E+QITT
Sbjct: 1 MQLV-KTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G + VAARK +DILR++P+ + VT+ + +K + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGGDQVATTVAARKLLDILRAMPDGQ-VTLSLADKRLTVQSGKSRFALQTLAADEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + T+ QK+ + +L MV+F++AQQDIRYYLNG+LL ++AV++DGHRL
Sbjct: 119 VAQAKDFGASLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGDQLMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + ++ ++I+PRKT+ LQRLLE+ ++ V + I+ Q K F +E++SKL
Sbjct: 179 AFSSMKLEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVELVSKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D++ VI ++ +F + R +L RSLQR +I+++DK KGVR ++ P LKI ++
Sbjct: 239 VEGKFPDFQRVIPKAHKNTFQIGREELQRSLQRAAILTSDKFKGVRCIVAPGQLKIMSTN 298
Query: 301 SNREKA 306
+++E+A
Sbjct: 299 ADQEEA 304
>gi|134294130|ref|YP_001117865.1| DNA polymerase III subunit beta [Burkholderia vietnamiensis G4]
gi|134137287|gb|ABO53030.1| DNA polymerase III, beta subunit [Burkholderia vietnamiensis G4]
Length = 368
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 140/308 (45%), Positives = 213/308 (69%), Gaps = 6/308 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ KN +SFLSTD E+QITT
Sbjct: 1 MQLV-KTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G + VAARK +DILR++P+ + VT+ + +K + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGGDQVATTVAARKLLDILRAMPDGQ-VTLSLADKRLTVQSGKSRFALQTLAADEFP- 117
Query: 121 MTLNSKYDFEFTLS--QKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGH 178
T+ DF +LS QK+ + +L MV+F++AQQDIRYYLNG+LL ++AV++DGH
Sbjct: 118 -TVAQAKDFAASLSVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGDQLMAVATDGH 176
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL + + I+ ++I+PRKT+ LQRLLE+ ++ V + I+ Q K F +E++S
Sbjct: 177 RLAFSSMKIEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGGVELVS 236
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KL++GKF D++ VI ++ +F + R +L RSLQR +I+++DK KGVR +I P LKI
Sbjct: 237 KLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIMS 296
Query: 299 SSSNREKA 306
+++++E+A
Sbjct: 297 TNADQEEA 304
>gi|416912708|ref|ZP_11931739.1| DNA polymerase III subunit beta [Burkholderia sp. TJI49]
gi|325528072|gb|EGD05284.1| DNA polymerase III subunit beta [Burkholderia sp. TJI49]
Length = 368
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 134/306 (43%), Positives = 210/306 (68%), Gaps = 2/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ KN +SFLSTD E+QITT
Sbjct: 1 MQLV-KTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G + VAARK +DILR++P+ + VT+ + +K + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGGDQVATTVAARKLLDILRAMPDGQ-VTLSLADKRLTVQSGKSRFALQTLAADEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + T+ QK+ + +L MV+F++AQQDIRYYLNG+LL ++AV++DGHRL
Sbjct: 119 VAQAKDFGASLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGDQLMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + ++ ++I+PRKT+ LQRLLE+ ++ V + I+ Q K F +E++SKL
Sbjct: 179 AFSSMKLEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVELVSKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D++ VI ++ +F + R +L RSLQR +I+++DK KGVR ++ P LKI ++
Sbjct: 239 VEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIVAPGQLKIMSTN 298
Query: 301 SNREKA 306
+++E+A
Sbjct: 299 ADQEEA 304
>gi|387900765|ref|YP_006331104.1| DNA polymerase III subunit beta [Burkholderia sp. KJ006]
gi|387575657|gb|AFJ84373.1| DNA polymerase III beta subunit [Burkholderia sp. KJ006]
Length = 368
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 140/308 (45%), Positives = 214/308 (69%), Gaps = 6/308 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV TE++ +L PLQ V IVE+++ LPIL+N+L+ KN +SFLSTD E+QITT
Sbjct: 1 MQLV-KTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G+ + VAARK +DILR++P+ + VT+ + +K + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGSDQVATTVAARKLLDILRAMPDGQ-VTLSLADKRLTVQSGKSRFALQTLAADEFP- 117
Query: 121 MTLNSKYDFEFTLS--QKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGH 178
T+ DF +LS QK+ + +L MV+F++AQQDIRYYLNG+LL ++AV++DGH
Sbjct: 118 -TVAQAKDFAASLSVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGDQLMAVATDGH 176
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL + + I+ ++I+PRKT+ LQRLLE+ ++ V + I+ Q K F +E++S
Sbjct: 177 RLAFSSMKIEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGGVELVS 236
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KL++GKF D++ VI ++ +F + R +L RSLQR +I+++DK KGVR +I P LKI
Sbjct: 237 KLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIMS 296
Query: 299 SSSNREKA 306
+++++E+A
Sbjct: 297 TNADQEEA 304
>gi|332286196|ref|YP_004418107.1| DNA polymerase III subunit beta [Pusillimonas sp. T7-7]
gi|330430149|gb|AEC21483.1| DNA polymerase III subunit beta [Pusillimonas sp. T7-7]
Length = 369
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 143/302 (47%), Positives = 208/302 (68%), Gaps = 4/302 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++A+L PL V IVE++N LPIL+NIL+ K + ++F++TD EVQITT+
Sbjct: 1 MQLVQAT-RDALLKPLSTVAGIVERRNTLPILANILLRKEGKSVAFIATDLEVQITTHAE 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G+ + + VAARK +DILR+LP++ + + + + + ++SGKS+F LQTL A E+P
Sbjct: 60 FGVGDDNESTTVAARKLLDILRALPDSGDIKLGLASSKLSVQSGKSRFALQTLGATEFPT 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ K+D F L QKTLK + NMV+F++AQQDIRYYLNGLL F+ + AV++DGHRL
Sbjct: 120 LAQPEKWDVSFALPQKTLKHLFNMVHFAMAQQDIRYYLNGLLFVFEPGFVRAVATDGHRL 179
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ ++ S D+I+PRKTV +QRLL + + PV + ++ QI+ F ++E++SKL
Sbjct: 180 AHSGTVVE-GIESKHDVIVPRKTVLEMQRLLGDTDEPVSIDVATGQIRFRFGDVELVSKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D+ VI + Y + F VNR L SLQR +I++ DKLKGVR+ + N LKI SS
Sbjct: 239 VEGKFPDFTRVIPSNYTRHFSVNREILQGSLQRAAILTTDKLKGVRVQLSDNQLKI--SS 296
Query: 301 SN 302
SN
Sbjct: 297 SN 298
>gi|311103226|ref|YP_003976079.1| DNA polymerase III subunit beta [Achromobacter xylosoxidans A8]
gi|310757915|gb|ADP13364.1| DNA polymerase III, beta subunit [Achromobacter xylosoxidans A8]
Length = 369
Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 140/302 (46%), Positives = 206/302 (68%), Gaps = 4/302 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++A+L PL V IVE+++ LPIL+NIL+ K K++F++TD EVQITT+
Sbjct: 1 MQLV-QTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G + + VAARK +DIL++LP+T V + + + + ++S KS+F LQTL A E+P
Sbjct: 60 FGVGQDNESTTVAARKLLDILKALPDTGDVRLALASNKLSVQSAKSRFALQTLAASEFPT 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ ++D T+ Q+TL+ + NMV+F++AQQDIRYYLNG+LL F+ + AV++DGHRL
Sbjct: 120 VAQPEQWDVSLTMPQRTLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPGRVRAVATDGHRL 179
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ D S ++I+PRKTV +QRLLE+ + PV + ++ QI+ F ++E++SKL
Sbjct: 180 AHCSTEAD-GISERHEVIVPRKTVLEMQRLLEDSDEPVSIDVAPGQIRFRFGDVELVSKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D+ VI Y + FLVNR L SLQR +I++ DK KGVRL + N +KI SS
Sbjct: 239 VEGKFPDFTRVIPTNYTRHFLVNREALQGSLQRAAILTTDKFKGVRLQLAQNQMKI--SS 296
Query: 301 SN 302
SN
Sbjct: 297 SN 298
>gi|187479880|ref|YP_787905.1| DNA polymerase III subunit beta [Bordetella avium 197N]
gi|115424467|emb|CAJ51021.1| DNA polymerase III, beta chain [Bordetella avium 197N]
Length = 371
Score = 293 bits (750), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 140/302 (46%), Positives = 206/302 (68%), Gaps = 4/302 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++A+L PL V IVE+++ LPIL+NIL+ K K++F++TD EVQITT+
Sbjct: 3 MQLV-QTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHAD 61
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G + + VAARK +DIL++LP+T V + + + + ++S KS+F LQTL A E+P
Sbjct: 62 FGVGADNESTTVAARKLLDILKALPDTGDVKLALASNKLSVQSAKSRFALQTLAASEFPT 121
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ ++D TL Q+TL+ + NMV+F++AQQDIRYYLNG+LL F+ + AV++DGHRL
Sbjct: 122 VAQPEQWDVSLTLPQRTLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPGRVRAVATDGHRL 181
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ D + ++I+PRKTV +QRLLE+ + PV L ++ QI+ F ++E++SKL
Sbjct: 182 AHCATEAD-GIAERHEVIVPRKTVLEMQRLLEDSDEPVSLDVAPGQIRFRFGDVELVSKL 240
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D+ VI Y + FLV+R L SLQR +I++ DK KGVRL + N +KI SS
Sbjct: 241 VEGKFPDFSRVIPTNYTRHFLVSREALQGSLQRAAILTTDKFKGVRLQLGHNVMKI--SS 298
Query: 301 SN 302
SN
Sbjct: 299 SN 300
>gi|163854306|ref|YP_001628604.1| DNA polymerase III subunit beta [Bordetella petrii DSM 12804]
gi|163258034|emb|CAP40333.1| DNA polymerase III, beta chain [Bordetella petrii]
Length = 369
Score = 293 bits (750), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 140/302 (46%), Positives = 208/302 (68%), Gaps = 4/302 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++A+L PL V IVE+++ LPIL+NIL+ K K++F++TD EVQITT+
Sbjct: 1 MQLV-QTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G + + VAARK +DIL++LP+T +V + + N + ++S KS+F LQTL A E+P
Sbjct: 60 FGVGQDNESTTVAARKLLDILKALPDTGEVKLGLANNKLSVQSAKSRFALQTLAASEFPT 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ K+D +L Q+TL+ +LNMV+F++AQQDIRYYLNG+LL F+ + AV++DGHRL
Sbjct: 120 VAQPEKWDVSLSLPQRTLRHLLNMVHFAMAQQDIRYYLNGMLLVFEAGCVRAVATDGHRL 179
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ D + ++I+PRKTV +QRLLE+ + PV + ++ QI+ F ++E++SKL
Sbjct: 180 AHCATAAD-GITERHEVIVPRKTVLEMQRLLEDSDEPVAVDVAPGQIRFRFGDVELVSKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D+ VI Y + F+V+R L SLQR +I++ DK KGVRL + N +KI SS
Sbjct: 239 VEGKFPDFTRVIPTNYTRQFVVSREALQGSLQRAAILTTDKFKGVRLQLAQNQMKI--SS 296
Query: 301 SN 302
SN
Sbjct: 297 SN 298
>gi|422323357|ref|ZP_16404396.1| DNA polymerase subunit III [Achromobacter xylosoxidans C54]
gi|317401671|gb|EFV82296.1| DNA polymerase subunit III [Achromobacter xylosoxidans C54]
Length = 371
Score = 293 bits (750), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 139/302 (46%), Positives = 206/302 (68%), Gaps = 4/302 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++A+L PL V IVE+++ LPIL+NIL+ K K++F++TD EVQITT+
Sbjct: 3 MQLV-QTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHAD 61
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G+ + + VAARK +DIL++LP+T V + + + + ++S KS+F LQTL A E+P
Sbjct: 62 FGVGHDNESTTVAARKLLDILKALPDTGDVRLALASNKLSVQSAKSRFALQTLAASEFPT 121
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ ++D T+ Q+TL+ + NMV+F++AQQDIRYYLNG+LL F+ + AV++DGHRL
Sbjct: 122 VAQPEQWDVSLTMPQRTLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPGRVRAVATDGHRL 181
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ D S ++I+PRKTV +QRLLE+ + PV + ++ QI+ F ++E++SKL
Sbjct: 182 AHCSTEAD-GISERHEVIVPRKTVLEMQRLLEDSDEPVSIDVAPGQIRFRFGDVELVSKL 240
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D+ VI Y + FLV R L SLQR +I++ DK KGVRL + N +KI SS
Sbjct: 241 VEGKFPDFTRVIPTNYTRHFLVGREALQGSLQRAAILTTDKFKGVRLQLAQNQMKI--SS 298
Query: 301 SN 302
SN
Sbjct: 299 SN 300
>gi|451936136|ref|YP_007459990.1| DNA polymerase III subunit beta [Candidatus Kinetoplastibacterium
oncopeltii TCC290E]
gi|451777059|gb|AGF48034.1| DNA polymerase III subunit beta [Candidatus Kinetoplastibacterium
oncopeltii TCC290E]
Length = 370
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 135/299 (45%), Positives = 215/299 (71%), Gaps = 2/299 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKN-SEKISFLSTDTEVQITTYTAVGYGNSS 67
+ ++L L ++ IVE++N +PILSN+++ K+ K++F++TD EVQ+TTY G G S
Sbjct: 8 RESLLKTLSNIVGIVERRNTMPILSNLMIRKDKGNKVAFITTDIEVQMTTYANCGSGESE 67
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
++ V+ARKF+DIL++LP+ + + + + ++I+S KS+F LQT++++E+P+M+ +
Sbjct: 68 VSTTVSARKFLDILKALPDMSNINVELHDNKIYIESSKSRFNLQTINSEEFPVMSCPDTW 127
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
D LSQ+ LK + +MVYFS+AQQDIRYYLNG+LL F+ I AVS+DGHRL+Y +
Sbjct: 128 DISVRLSQRDLKSLFSMVYFSMAQQDIRYYLNGMLLVFKDNCIFAVSTDGHRLSYNSIEA 187
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ +F C ++I+PRKT+ LQRLL++ ++ + + +S++QIK F +IE ISKL++GKF D
Sbjct: 188 N-EFEGCKEVIVPRKTILELQRLLQDSDDIICIDVSSSQIKFCFRDIEFISKLVEGKFPD 246
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
++ VI N Y SF +NR SLQR++II+NDK KGVR + N LK++ S+++ E+A
Sbjct: 247 FRKVIPNNYPISFPINREYFQGSLQRVAIITNDKFKGVRFHFETNNLKVSSSNTDHEEA 305
>gi|424778686|ref|ZP_18205630.1| DNA polymerase III subunit beta [Alcaligenes sp. HPC1271]
gi|422886504|gb|EKU28922.1| DNA polymerase III subunit beta [Alcaligenes sp. HPC1271]
Length = 369
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 140/306 (45%), Positives = 212/306 (69%), Gaps = 2/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++A+L PL V+ IVE+++ LPIL+NIL+ KN +SFL+TD EVQITT
Sbjct: 1 MQLVQAT-RDALLKPLSTVVGIVERRHTLPILANILLRKNGSDVSFLATDLEVQITTNAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G + VAARK +DIL++LP+ V + +++ + I+SGKS+F LQTL+A ++P+
Sbjct: 60 FGVGEDNAATTVAARKLLDILKALPDFGDVRLGLDSGKLTIQSGKSRFQLQTLEAADFPV 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ L ++D ++ Q+TLK + N V+F++AQQDIRYYLNG+LL F+ + V++DGHRL
Sbjct: 120 LNLPEQWDVSLSMPQRTLKHLFNTVHFAMAQQDIRYYLNGMLLVFEPGLVRTVTTDGHRL 179
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ ID DII+PRKTV +QRLL + ++ V + +S+ QI+ F ++E++SKL
Sbjct: 180 AHNATAID-GVQERHDIIVPRKTVLEMQRLLGDTDDLVNIDVSSRQIRFRFGDVELVSKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D+ VI + Y + F V+R L SLQR +I++ DKL+GVRL + N LKI+ S+
Sbjct: 239 VEGKFPDFARVIPSNYTRHFDVSREVLQGSLQRAAILTTDKLRGVRLQLSQNQLKISASN 298
Query: 301 SNREKA 306
+ +E+A
Sbjct: 299 AEQEEA 304
>gi|456062339|ref|YP_007501309.1| DNA polymerase III, beta subunit [beta proteobacterium CB]
gi|455439636|gb|AGG32574.1| DNA polymerase III, beta subunit [beta proteobacterium CB]
Length = 371
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 141/305 (46%), Positives = 215/305 (70%), Gaps = 7/305 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV NT ++++L PLQ+V IVE+++ LPIL+N+L K +K+SF+STD E+QITT +
Sbjct: 1 MQLV-NTSRDSLLKPLQVVSGIVERRHTLPILANLLFKKQGDKVSFVSTDIEIQITTNAS 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G + VAARK +DILR+LPE V + +++ M ++SGKS+F+LQTL A E+P+
Sbjct: 60 FGVGPEDVTTTVAARKLLDILRALPEG-PVALNLKDNKMVVQSGKSRFSLQTLSATEFPV 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
M + + ++QK+ + +++ V+F++AQQDIRYYLNG+LL + K +IAV++DGHRL
Sbjct: 119 MQSVGEVTASWKMTQKSFRQLVSQVHFAMAQQDIRYYLNGMLLVIEGKQVIAVATDGHRL 178
Query: 181 TYYQVNI-DKKFSSCS--DIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
Y QV + D S +IIIPRKT+ Q LLE+ ++ +E+ +++NQ+K F +IE+I
Sbjct: 179 AYSQVELSDAPVGSGQRQEIIIPRKTILECQHLLEDSDDLLEMSLTSNQVKFTFGDIELI 238
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKL++GKF D++ VI ++ S +V R+ L +LQR +I++ DK KGVR + PN +IT
Sbjct: 239 SKLVEGKFPDFQRVIPKGHKNSLIVGRDVLQSALQRAAILTTDKFKGVRFSLSPN--RIT 296
Query: 298 VSSSN 302
V S+N
Sbjct: 297 VQSTN 301
>gi|359795283|ref|ZP_09297908.1| DNA polymerase III subunit beta [Achromobacter arsenitoxydans SY8]
gi|359366702|gb|EHK68374.1| DNA polymerase III subunit beta [Achromobacter arsenitoxydans SY8]
Length = 369
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 137/302 (45%), Positives = 204/302 (67%), Gaps = 4/302 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++A+L PL V IVE+++ LPIL+NIL+ K K++F++TD EVQITT+
Sbjct: 1 MQLV-QTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G + + VAARK +DIL++LP+T V + + + + ++S KS+F LQTL A E+P
Sbjct: 60 FGVGQDNESTTVAARKLLDILKALPDTGDVRLALASNKLSVQSAKSRFALQTLAASEFPT 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ ++D T+ Q+TL+ + NMV+F++AQQDIRYYLNG+LL F+ + AV++DGHRL
Sbjct: 120 VAQPEQWDVSLTMPQRTLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPGRVRAVATDGHRL 179
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ D + ++I+PRKTV +QRLLE+ + V + ++ QI+ F ++E++SKL
Sbjct: 180 AHCSTEAD-GIAERHEVIVPRKTVLEMQRLLEDSDETVSIDVAPGQIRFRFGDVELVSKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D+ VI Y + FLV R L SLQR +I++ DK KGVRL + N +KI SS
Sbjct: 239 VEGKFPDFTRVIPTNYTRHFLVGREALQGSLQRAAILTTDKFKGVRLQLAQNQMKI--SS 296
Query: 301 SN 302
SN
Sbjct: 297 SN 298
>gi|171462834|ref|YP_001796947.1| DNA polymerase III subunit beta [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171192372|gb|ACB43333.1| DNA polymerase III, beta subunit [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 371
Score = 286 bits (733), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 141/305 (46%), Positives = 211/305 (69%), Gaps = 7/305 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV NT ++ +L PLQ+V IVE+++ LPIL+N+L K EK+SF+STD E+QITT
Sbjct: 1 MQLV-NTSRDNLLKPLQVVSGIVERRHTLPILANLLFKKIEEKVSFVSTDIEIQITTNAN 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G+ + VAARK +DILR+LPE V + +++ M ++SGKS+F+LQTL A E+P+
Sbjct: 60 FGVGSEDVTTTVAARKLLDILRALPEG-PVFLNLKDSKMVVQSGKSRFSLQTLSATEFPV 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
M + + +SQK+ + +++ V+FS+AQQDIRYYLNG+LL + K ++AV++DGHRL
Sbjct: 119 MQSVGEVTAAWKMSQKSFRQLISQVHFSMAQQDIRYYLNGMLLVVEGKEVVAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCS---DIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
Y QV + + S ++IIPRKT+ Q LLE + P+E+ ++ NQ+K F +IE+I
Sbjct: 179 AYSQVELVEAPSGSGQKQEVIIPRKTILECQHLLEGSDEPLEISLTANQVKFSFGDIELI 238
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKL++GKF D++ VI + S +V R+ L +LQR +I++ DK KGVR + PN +IT
Sbjct: 239 SKLVEGKFPDFQRVIPKGQKNSLVVGRDALQSALQRAAILTTDKFKGVRFSLSPN--RIT 296
Query: 298 VSSSN 302
+ S+N
Sbjct: 297 IQSTN 301
>gi|421486806|ref|ZP_15934340.1| DNA polymerase III subunit beta [Achromobacter piechaudii HLE]
gi|400194924|gb|EJO27926.1| DNA polymerase III subunit beta [Achromobacter piechaudii HLE]
Length = 369
Score = 286 bits (733), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 136/302 (45%), Positives = 204/302 (67%), Gaps = 4/302 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++A+L PL V IVE+++ LPIL+NIL+ K K++F++TD EVQITT+
Sbjct: 1 MQLV-QTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G + + VAARK +DIL++LP+T V + + + + ++S KS+F LQTL A E+P
Sbjct: 60 FGVGQDNESTTVAARKLLDILKALPDTGDVRLALASNKLSVQSAKSRFALQTLAASEFPT 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ ++D T+ Q+TL+ + NMV+F++AQQDIRYYLNG+LL F+ + AV++DGHRL
Sbjct: 120 VAQPEQWDVSLTMPQRTLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPGRVRAVATDGHRL 179
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ D + ++I+PRKTV +QRLLE+ + V + ++ QI+ F ++E++SKL
Sbjct: 180 AHCSTEAD-GIAERHEVIVPRKTVLEMQRLLEDSDEVVSIDVAPGQIRFRFGDVELVSKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D+ VI Y + F+V R L SLQR +I++ DK KGVRL + N +KI SS
Sbjct: 239 VEGKFPDFTRVIPTNYTRHFMVGREALQGSLQRAAILTTDKFKGVRLQLAQNQMKI--SS 296
Query: 301 SN 302
SN
Sbjct: 297 SN 298
>gi|293602696|ref|ZP_06685137.1| DNA-directed DNA polymerase III beta subunit [Achromobacter
piechaudii ATCC 43553]
gi|292818887|gb|EFF77927.1| DNA-directed DNA polymerase III beta subunit [Achromobacter
piechaudii ATCC 43553]
Length = 371
Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 136/302 (45%), Positives = 204/302 (67%), Gaps = 4/302 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++A+L PL V IVE+++ LPIL+NIL+ K K++F++TD EVQITT+
Sbjct: 3 MQLV-QTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHAD 61
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G + + VAARK +DIL++LP+T V + + + + ++S KS+F LQTL A E+P
Sbjct: 62 FGVGQDNESTTVAARKLLDILKALPDTGDVRLALASNKLSVQSAKSRFALQTLAASEFPT 121
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ ++D T+ Q+TL+ + NMV+F++AQQDIRYYLNG+LL F+ + AV++DGHRL
Sbjct: 122 VAQPEQWDVSLTMPQRTLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPGRVRAVATDGHRL 181
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ D + ++I+PRKTV +QRLLE+ + V + ++ QI+ F ++E++SKL
Sbjct: 182 AHCSTEAD-GIAERHEVIVPRKTVLEMQRLLEDSDEVVSIDVAPGQIRFRFGDVELVSKL 240
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D+ VI Y + F+V R L SLQR +I++ DK KGVRL + N +KI SS
Sbjct: 241 VEGKFPDFTRVIPTNYTRHFMVGREALQGSLQRAAILTTDKFKGVRLQLAQNQMKI--SS 298
Query: 301 SN 302
SN
Sbjct: 299 SN 300
>gi|423014875|ref|ZP_17005596.1| DNA polymerase III subunit beta [Achromobacter xylosoxidans AXX-A]
gi|338782125|gb|EGP46502.1| DNA polymerase III subunit beta [Achromobacter xylosoxidans AXX-A]
Length = 369
Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 137/302 (45%), Positives = 205/302 (67%), Gaps = 4/302 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++A+L PL V IVE+++ LPIL+NIL+ K K++F++TD EVQITT+
Sbjct: 1 MQLV-QTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G+ + + VAARK +DIL++LP+T V + + + + ++S KS+F LQTL A E+P
Sbjct: 60 FGVGHDNESTTVAARKLLDILKALPDTGDVRLALASNKLSVQSAKSRFALQTLAASEFPT 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ ++D ++ Q+TL+ + NMV+F++AQQDIRYYLNG+LL F+ + AV++DGHRL
Sbjct: 120 VAQPEQWDVSLSMPQRTLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPGRVRAVATDGHRL 179
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ D S ++I+PRKTV +QRLLE+ + V + ++ QI+ F ++E++SKL
Sbjct: 180 AHCSTEAD-GISERHEVIVPRKTVLEMQRLLEDSDELVSIDVAPGQIRFRFGDVELVSKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D+ VI Y + FLV R L SLQR +I++ DK KGVRL + N +KI SS
Sbjct: 239 VEGKFPDFTRVIPTNYSRHFLVGREALQGSLQRAAILTTDKFKGVRLQLAQNQMKI--SS 296
Query: 301 SN 302
SN
Sbjct: 297 SN 298
>gi|33603962|ref|NP_891522.1| DNA polymerase III subunit beta [Bordetella bronchiseptica RB50]
gi|410422413|ref|YP_006902862.1| DNA polymerase III subunit beta [Bordetella bronchiseptica MO149]
gi|410474960|ref|YP_006898241.1| DNA polymerase III subunit beta [Bordetella parapertussis Bpp5]
gi|412340723|ref|YP_006969478.1| DNA polymerase III subunit beta [Bordetella bronchiseptica 253]
gi|427816971|ref|ZP_18984035.1| DNA polymerase iii, beta chain [Bordetella bronchiseptica 1289]
gi|427817282|ref|ZP_18984345.1| DNA polymerase iii, beta chain [Bordetella bronchiseptica D445]
gi|427823015|ref|ZP_18990077.1| DNA polymerase iii, beta chain [Bordetella bronchiseptica Bbr77]
gi|33568938|emb|CAE35352.1| DNA polymerase iii, beta chain [Bordetella bronchiseptica RB50]
gi|408445070|emb|CCJ51866.1| DNA polymerase iii, beta chain [Bordetella parapertussis Bpp5]
gi|408449708|emb|CCJ61400.1| DNA polymerase iii, beta chain [Bordetella bronchiseptica MO149]
gi|408770557|emb|CCJ55351.1| DNA polymerase iii, beta chain [Bordetella bronchiseptica 253]
gi|410567971|emb|CCN25544.1| DNA polymerase iii, beta chain [Bordetella bronchiseptica 1289]
gi|410568282|emb|CCN16314.1| DNA polymerase iii, beta chain [Bordetella bronchiseptica D445]
gi|410588280|emb|CCN03337.1| DNA polymerase iii, beta chain [Bordetella bronchiseptica Bbr77]
Length = 371
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 135/302 (44%), Positives = 205/302 (67%), Gaps = 4/302 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++A+L PL V IVE+++ LPIL+NIL+ K K++F++TD EVQITT+
Sbjct: 3 MQLV-QTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHAD 61
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G + + VAARK +DIL++LP+T +V + + + + ++S KS+F LQTL A E+P
Sbjct: 62 FGVGPENESTTVAARKLLDILKALPDTGEVKLGLASNKLSVQSAKSRFALQTLAASEFPT 121
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ ++D ++ Q+ L+ + NMV+F++AQQDIRYYLNG+LL F+ + AV++DGHRL
Sbjct: 122 VAQPEQWDVSLSMPQRMLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPGRVRAVATDGHRL 181
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ D + ++I+PRKTV +QRLLE+ + PV L ++ QI+ F ++E++SKL
Sbjct: 182 AHCATEAD-GIAERHEVIVPRKTVLEMQRLLEDSDEPVALDVAPGQIRFRFGDVELVSKL 240
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D+ VI Y + F V+R L SLQR +I++ DK KGVRL + + +KI SS
Sbjct: 241 VEGKFPDFTRVIPTNYTRQFSVSREALQGSLQRAAILTTDKFKGVRLQLAQHQMKI--SS 298
Query: 301 SN 302
SN
Sbjct: 299 SN 300
>gi|33591699|ref|NP_879343.1| DNA polymerase III subunit beta [Bordetella pertussis Tohama I]
gi|384203004|ref|YP_005588743.1| DNA polymerase III subunit beta [Bordetella pertussis CS]
gi|408414630|ref|YP_006625337.1| DNA polymerase III subunit beta [Bordetella pertussis 18323]
gi|33571342|emb|CAE44819.1| DNA polymerase iii, beta chain [Bordetella pertussis Tohama I]
gi|332381118|gb|AEE65965.1| DNA polymerase III subunit beta [Bordetella pertussis CS]
gi|401776800|emb|CCJ62038.1| DNA polymerase iii, beta chain [Bordetella pertussis 18323]
Length = 369
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 135/302 (44%), Positives = 205/302 (67%), Gaps = 4/302 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++A+L PL V IVE+++ LPIL+NIL+ K K++F++TD EVQITT+
Sbjct: 1 MQLV-QTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G + + VAARK +DIL++LP+T +V + + + + ++S KS+F LQTL A E+P
Sbjct: 60 FGVGPENESTTVAARKLLDILKALPDTGEVKLGLASNKLSVQSAKSRFALQTLAASEFPT 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ ++D ++ Q+ L+ + NMV+F++AQQDIRYYLNG+LL F+ + AV++DGHRL
Sbjct: 120 VAQPEQWDVSLSMPQRMLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPGRVRAVATDGHRL 179
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ D + ++I+PRKTV +QRLLE+ + PV L ++ QI+ F ++E++SKL
Sbjct: 180 AHCATEAD-GIAERHEVIVPRKTVLEMQRLLEDSDEPVALDVAPGQIRFRFGDVELVSKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D+ VI Y + F V+R L SLQR +I++ DK KGVRL + + +KI SS
Sbjct: 239 VEGKFPDFTRVIPTNYTRQFSVSREALQGSLQRAAILTTDKFKGVRLQLAQHQMKI--SS 296
Query: 301 SN 302
SN
Sbjct: 297 SN 298
>gi|33598883|ref|NP_886526.1| DNA polymerase III subunit beta [Bordetella parapertussis 12822]
gi|33575013|emb|CAE39679.1| DNA polymerase iii, beta chain [Bordetella parapertussis]
Length = 371
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 135/302 (44%), Positives = 205/302 (67%), Gaps = 4/302 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++A+L PL V IVE+++ LPIL+NIL+ K K++F++TD EVQITT+
Sbjct: 3 MQLV-QTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHAD 61
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G + + VAARK +DIL++LP+T +V + + + + ++S KS+F LQTL A E+P
Sbjct: 62 FGVGPENESTTVAARKLLDILKALPDTGEVKLGLASNKLSVQSAKSRFALQTLAASEFPT 121
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ ++D ++ Q+ L+ + NMV+F++AQQDIRYYLNG+LL F+ + AV++DGHRL
Sbjct: 122 VAQPEQWDVSLSMPQRMLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPGRVRAVATDGHRL 181
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ D + ++I+PRKTV +QRLLE+ + PV L ++ QI+ F ++E++SKL
Sbjct: 182 AHCATEAD-GIAERHEVIVPRKTVLEMQRLLEDSDEPVALDVAPGQIRFRFGDVELVSKL 240
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D+ VI Y + F V+R L SLQR +I++ DK KGVRL + + +KI SS
Sbjct: 241 VEGKFPDFTRVIPTNYTRQFSVSREALQGSLQRAAILTTDKFKGVRLQLAQHQMKI--SS 298
Query: 301 SN 302
SN
Sbjct: 299 SN 300
>gi|437999701|ref|YP_007183434.1| DNA polymerase III subunit beta [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451812606|ref|YP_007449059.1| DNA polymerase III subunit beta [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
gi|429338935|gb|AFZ83357.1| DNA polymerase III subunit beta [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451778575|gb|AGF49455.1| DNA polymerase III subunit beta [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
Length = 371
Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 134/304 (44%), Positives = 213/304 (70%), Gaps = 2/304 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKN-SEKISFLSTDTEVQITTYT 59
M ++ + ++L L ++ IVE++N +PILSNI++CK+ K++F++TD EVQ+TTY
Sbjct: 1 MMRFLHVVRESLLKTLSNIVGIVERRNTMPILSNIMICKDKGNKVAFITTDIEVQMTTYA 60
Query: 60 AVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP 119
G+G S + V+ARKF+DIL++LP+ V + + + ++I+S KS+F LQT+++ E+P
Sbjct: 61 NCGFGESEASTTVSARKFLDILKALPDMSSVNVDLHDNKLYIESSKSRFNLQTINSDEFP 120
Query: 120 IMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+M+ + ++ +LSQ+ LK + NMVYFS+AQQDIRYYLNG+LL F+ I+AVS+DGHR
Sbjct: 121 VMSCPNTWEISISLSQRDLKNLFNMVYFSMAQQDIRYYLNGMLLVFKDNCIVAVSTDGHR 180
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L Y I +F C ++I+PRKT+ +QRLL++ ++ + + +S+ QIK F +IE ISK
Sbjct: 181 LAYNST-IANEFRVCKEVIVPRKTILEMQRLLQDSDDVICIDVSDTQIKFCFRDIEFISK 239
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
L++GKF D++ VI Y SF ++R SLQR++I++NDK KGVR + LKI+ S
Sbjct: 240 LVEGKFPDFRKVIPINYPISFSISREIFQGSLQRVAILTNDKFKGVRFHFDVDNLKISSS 299
Query: 300 SSNR 303
+++
Sbjct: 300 NTDH 303
>gi|451811878|ref|YP_007448332.1| DNA polymerase III subunit beta [Candidatus Kinetoplastibacterium
galatii TCC219]
gi|451777780|gb|AGF48728.1| DNA polymerase III subunit beta [Candidatus Kinetoplastibacterium
galatii TCC219]
Length = 370
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 131/299 (43%), Positives = 209/299 (69%), Gaps = 2/299 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCK-NSEKISFLSTDTEVQITTYTAVGYGNSS 67
+ ++L L ++ IVE++N +PILSNI++ K K++F++TD EVQ+TTY G G+S
Sbjct: 8 RESLLKTLSNIVGIVERRNTMPILSNIMIRKYKGNKVAFVTTDIEVQMTTYADCGSGDSE 67
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
++ V+ARKF+DIL++LP+ + + + + ++I+S KS+F LQT+ ++E+P+M+ +
Sbjct: 68 VSTTVSARKFLDILKALPDMSSINVELHDNKLYIESSKSRFNLQTISSEEFPMMSCPDNW 127
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
D L Q+ K + MVYFS+AQQDIRYYLNG+ L F+ I+AVS+DGHRL+Y
Sbjct: 128 DISINLPQRDTKNLFGMVYFSMAQQDIRYYLNGMFLVFKDNCIVAVSTDGHRLSYNSTTA 187
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ +F C ++I+PRKT+ LQRLL++ ++ + + +S++QIK F +IE ISKL++GKF D
Sbjct: 188 N-EFEGCKEVIVPRKTILELQRLLQDSDDIIRIDVSSSQIKFCFRDIEFISKLVEGKFPD 246
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
++ VI N Y SF + R SLQR++I++NDK KGVR + + LKI+ S+++ E+A
Sbjct: 247 FRKVIPNNYPISFSIKREYFQGSLQRVAILTNDKFKGVRFHFEDDNLKISSSNTDHEEA 305
>gi|452126725|ref|ZP_21939308.1| DNA polymerase III subunit beta [Bordetella holmesii F627]
gi|452130100|ref|ZP_21942673.1| DNA polymerase III subunit beta [Bordetella holmesii H558]
gi|451921820|gb|EMD71965.1| DNA polymerase III subunit beta [Bordetella holmesii F627]
gi|451922960|gb|EMD73104.1| DNA polymerase III subunit beta [Bordetella holmesii H558]
Length = 369
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 135/302 (44%), Positives = 203/302 (67%), Gaps = 4/302 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++A+L PL V IVE+++ LPIL+NIL+ K K++F++TD EVQITT+
Sbjct: 1 MQLV-QTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G + + VAARK +DIL++LP+T V + + + + ++S KS+F LQTL A E+P
Sbjct: 60 FGVGADNESTTVAARKLLDILKALPDTGDVRLALASNKLSVQSAKSRFALQTLAASEFPT 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ +D ++ Q+TL+ + NMV+F++AQQDIRYYLNG+LL F+ + AV++DGHRL
Sbjct: 120 VAQPENWDVSLSMPQRTLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPGRVRAVATDGHRL 179
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ D + ++I+PRKTV +QRLLE+ + V + ++ QI+ F ++E++SKL
Sbjct: 180 AHCATEAD-GIAERHEVIVPRKTVLEMQRLLEDSDEAVSIDVAPGQIRFRFGDVELVSKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D+ VI Y + F V+R L SLQR +I++ DK KGVRL + N +KI SS
Sbjct: 239 VEGKFPDFSRVIPTNYTRHFSVSREALQGSLQRAAILTTDKFKGVRLQLGENVMKI--SS 296
Query: 301 SN 302
SN
Sbjct: 297 SN 298
>gi|145588191|ref|YP_001154788.1| DNA polymerase III subunit beta [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145046597|gb|ABP33224.1| DNA polymerase III, beta subunit [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 371
Score = 280 bits (716), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 139/305 (45%), Positives = 217/305 (71%), Gaps = 7/305 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV NT ++++L PLQ+V IVE+++ LPIL+N+L KN EK+SF+STD E+QITT
Sbjct: 1 MQLV-NTSRDSLLKPLQVVSGIVERRHTLPILANLLFKKNGEKVSFISTDIEIQITTNAN 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G+ + VAARK +DILR+LPE E V++ +++ M ++SGKS+F+LQTL A E+P+
Sbjct: 60 FGVGSEDVTTTVAARKLLDILRALPEGE-VSLNLKDNRMVVQSGKSRFSLQTLSATEFPV 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
M + ++++QK+ + +++ V+FS+AQQDIRYYLNG+LL + K ++AV++DGHRL
Sbjct: 119 MQSVGEVTAAWSMTQKSFRQLISQVHFSMAQQDIRYYLNGMLLVVEGKEVVAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCS---DIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
+ +V + + S +IIIPRKT+ Q LLE+ + +E+ ++ NQ+K F +IE+I
Sbjct: 179 AFSRVELTEAPSGSGQRQEIIIPRKTILECQHLLEDSDESLEISLTANQVKFSFGDIELI 238
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKL++GKF D++ VI ++ + +V R+ L +LQR +I++ DK KGVR + PN +IT
Sbjct: 239 SKLVEGKFPDFQRVIPKGHKNTLVVGRDALQAALQRAAILTTDKFKGVRFSLSPN--RIT 296
Query: 298 VSSSN 302
+ S+N
Sbjct: 297 IQSTN 301
>gi|403516755|ref|YP_006650888.1| DNA polymerase III subunit beta [Burkholderia pseudomallei BPC006]
gi|403072399|gb|AFR13979.1| DNA polymerase III subunit beta [Burkholderia pseudomallei BPC006]
Length = 350
Score = 280 bits (716), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 126/286 (44%), Positives = 197/286 (68%), Gaps = 2/286 (0%)
Query: 21 SIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDI 80
IVE+++ LPIL+N+L+ KN +SFLSTD E+QITT G G + VAARK +DI
Sbjct: 3 GIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADFGVGGDQVATTVAARKLLDI 62
Query: 81 LRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKC 140
LR++P+ + VT+ + +K + ++SGKS+F LQTL A E+P + + + + QK +
Sbjct: 63 LRAMPDGQ-VTLSLADKRLTVQSGKSRFALQTLAADEFPTVAQSKDFGASLAVPQKAFRQ 121
Query: 141 ILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIP 200
+L MVYF++AQQDIRYYLNG+LL ++AV++DGHRL + + I+ F ++I+P
Sbjct: 122 LLGMVYFAMAQQDIRYYLNGMLLVVDGDRLMAVATDGHRLAFSSMKIEGSFGR-QEVIVP 180
Query: 201 RKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVISNKYEKSF 260
RKT+ LQRLLE+ ++ V++ I+ Q K F +E++SKL++GKF D++ VI ++ +F
Sbjct: 181 RKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVELVSKLVEGKFPDFQRVIPKAHKNTF 240
Query: 261 LVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ R +L RSLQR +I+++DK KGVR +I P LKI +++++E+A
Sbjct: 241 EIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIMSTNADQEEA 286
>gi|389870303|ref|YP_006377722.1| DNA polymerase III subunit beta [Advenella kashmirensis WT001]
gi|388535552|gb|AFK60740.1| DNA polymerase III subunit beta [Advenella kashmirensis WT001]
Length = 369
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 134/306 (43%), Positives = 208/306 (67%), Gaps = 2/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQL+ ++A+L PLQ V IVE+++ +PIL+NIL+ K KI+F++TD EVQITT+
Sbjct: 1 MQLL-QANRDALLKPLQTVAGIVERRHTMPILANILLRKEGNKIAFVATDLEVQITTHAD 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G+ + VAARK +D +R+LP +V + +++ + I+SG+S+ LQTL EYP
Sbjct: 60 FGVGDDVESTTVAARKLLDFVRALPAANEVKLKLQDGKLGIQSGRSRLELQTLSGSEYPT 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+++ ++ FT+ QK L+ + MV+FS+AQQDIRYYLNG L+ F+ + AV++DGHRL
Sbjct: 120 VSVPESWNVSFTMPQKALRKLFGMVHFSMAQQDIRYYLNGTLMVFEPGMVRAVATDGHRL 179
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ +I+ S S++I+PRKTV +QRLL++ + PV + +S +QI+ F +IE+ISKL
Sbjct: 180 AHAAEDIE-GIQSSSEVILPRKTVLEVQRLLDDSDEPVNIDVSASQIRFTFGDIELISKL 238
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF D+K VI Y + F VNR L SL SI+ DKLKG++L ++ N L++ +
Sbjct: 239 VEGKFPDFKRVIPTDYTRHFNVNREALQSSLHIASILMTDKLKGIKLNLENNLLQMKYIN 298
Query: 301 SNREKA 306
+++E A
Sbjct: 299 ADQENA 304
>gi|451822723|ref|YP_007458997.1| DNA polymerase III subunit beta [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
gi|451775523|gb|AGF46564.1| DNA polymerase III subunit beta [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
Length = 371
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 139/304 (45%), Positives = 206/304 (67%), Gaps = 3/304 (0%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGY- 63
+ + +++ L V+ IVEK+N +PILSNIL+ K K+ F++TD +VQ+ + GY
Sbjct: 4 LQASRESLIKTLSRVVGIVEKRNTMPILSNILIKKEGSKLFFITTDIDVQMMVHVDFGYY 63
Query: 64 GNSSI-NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G+S I + V ARKF++IL++LPE V + + + + I S KS+F+LQTLDA E+PI+
Sbjct: 64 GDSDIMSTTVGARKFLEILKALPEMSDVILELSSGKINILSLKSRFSLQTLDANEFPIVA 123
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
++ +D L QK + +LNMVYFS+AQQDIRYYLNG+LL F IIAV++DGHRL+Y
Sbjct: 124 CDNNWDISLDLPQKDFRNLLNMVYFSMAQQDIRYYLNGMLLVFDNGKIIAVATDGHRLSY 183
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+ D F+ IIIPRKTV LQRLL++ + + L++SN QI+ F + E ISKL++
Sbjct: 184 SCIETD-NFTGYKKIIIPRKTVLELQRLLQDSDEKIFLEVSNTQIRFCFPDTEFISKLVE 242
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSN 302
GKF D+ VI Y + F ++R+ L +L R++I++NDK KGV+ + N LKI+ S+S+
Sbjct: 243 GKFPDFTKVIPVDYHRKFYIDRDILQGALMRVAILTNDKFKGVKFNLSKNSLKISSSNSD 302
Query: 303 REKA 306
E+A
Sbjct: 303 HEEA 306
>gi|372487513|ref|YP_005027078.1| DNA polymerase III subunit beta [Dechlorosoma suillum PS]
gi|359354066|gb|AEV25237.1| DNA polymerase III, beta subunit [Dechlorosoma suillum PS]
Length = 368
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 127/294 (43%), Positives = 199/294 (67%), Gaps = 1/294 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ T+++ +L PLQ V IVEK++ LPILSN+L+ K + ++FL+TD E+QITT A
Sbjct: 2 LLIKTQRDTLLSPLQSVSGIVEKRHTLPILSNVLLEKKGDALTFLATDIEIQITTSAAAE 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G + V ARK DILRSLPE +V++ +E K + ++ GKS+FTLQTL A ++P M
Sbjct: 62 GGEGDGAVTVGARKLQDILRSLPEGTEVSLVLEEKRLLVRGGKSRFTLQTLPADDFPRMA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ + F+++QK + +L +++A QD+RYYLNGLLL + K + AV++DGHRL +
Sbjct: 122 IGNDDAKRFSVTQKQFRQLLAQTQYAMAAQDVRYYLNGLLLLTEGKELRAVATDGHRLAF 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+ I+ + ++I+PRKTV L RLL + ++ +E+ +S NQ++ F N+ ++SKLID
Sbjct: 182 ASMEIEAELPR-QELILPRKTVLELNRLLADSDDALEITLSANQVRFAFGNVVLVSKLID 240
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
GKF DY+ VI + S + R LL+S+ R +I++N+K +GVRLV++ N LK+
Sbjct: 241 GKFPDYERVIPATLKNSLELGRTALLQSMVRAAILTNEKFRGVRLVLQGNSLKV 294
>gi|254246826|ref|ZP_04940147.1| DNA polymerase III, beta chain [Burkholderia cenocepacia PC184]
gi|124871602|gb|EAY63318.1| DNA polymerase III, beta chain [Burkholderia cenocepacia PC184]
Length = 395
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 122/281 (43%), Positives = 192/281 (68%), Gaps = 1/281 (0%)
Query: 26 KNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLP 85
++ LPIL+N+L+ KN +SFLSTD E+QITT G G I VAARK +DILR++P
Sbjct: 52 RHTLPILANLLITKNGPDVSFLSTDLELQITTRADFGVGGDQIATTVAARKLLDILRAMP 111
Query: 86 ETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMV 145
+ + VT+ + +K + ++SGKS+F LQTL A E+P + + T+ QK+ + +L MV
Sbjct: 112 DGQ-VTLSLADKRLTVQSGKSRFALQTLAADEFPTVAQAKDFGATLTVPQKSFRQLLGMV 170
Query: 146 YFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVF 205
+F++AQQDIRYYLNG+LL ++AV++DGHRL + + ++ ++I+PRKT+
Sbjct: 171 HFAMAQQDIRYYLNGMLLVVDGDQLMAVATDGHRLAFSSMKLEGGTFGRQEVIVPRKTIL 230
Query: 206 TLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVISNKYEKSFLVNRN 265
LQRLLE+ ++ V + I+ Q K F +E++SKL++GKF D++ VI ++ +F + R
Sbjct: 231 ELQRLLEDIDDTVTIDIAQTQAKFTFGQVELVSKLVEGKFPDFQRVIPKAHKNTFEIGRE 290
Query: 266 KLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+L RSLQR +I+++DK KGVR +I P LKI +++++E+A
Sbjct: 291 ELQRSLQRAAILTSDKFKGVRCIIAPGQLKIMSTNADQEEA 331
>gi|149925375|ref|ZP_01913639.1| DNA polymerase III subunit beta [Limnobacter sp. MED105]
gi|149825492|gb|EDM84700.1| DNA polymerase III subunit beta [Limnobacter sp. MED105]
Length = 368
Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 129/303 (42%), Positives = 208/303 (68%), Gaps = 1/303 (0%)
Query: 4 VVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGY 63
++++ ++A++ LQ+V +IVE++N LP+L+NIL+ K ++ LS+D E+QI T VG
Sbjct: 3 LIHSSRDALVRKLQIVSNIVERRNTLPVLANILLKKQGGLLTLLSSDIEMQIETSAEVGA 62
Query: 64 GNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTL 123
G VAARKF+DILRSLPE V + ++ K M +++ KS+F LQTL A+++P++
Sbjct: 63 GGEDTATTVAARKFLDILRSLPEDSDVMVKLDGKKMSVQAKKSRFALQTLPAEDFPLVQE 122
Query: 124 NSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
++ + +L QK LK +L MV+FS+AQQD+RYYLNG+LL + + AV++DGHRL Y
Sbjct: 123 PKEWVTQISLPQKMLKNLLGMVHFSMAQQDLRYYLNGVLLVIESACVRAVATDGHRLAYA 182
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDG 243
+ ++ ++IIPRKTV L RLL + ++ V + +++NQ K FS+I +I+KL++G
Sbjct: 183 DAP-GQGGTAKHEVIIPRKTVLELSRLLNDTDDTVTIDLASNQAKFTFSDITLITKLVEG 241
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNR 303
KF DY+ VI ++ ++ R+ LL SLQR SI+++DK +G+R V+ N L I ++S++
Sbjct: 242 KFPDYQRVIPKTHQHHVVIARDALLHSLQRASILTSDKFRGIRWVLGANGLTIVANNSDQ 301
Query: 304 EKA 306
E+A
Sbjct: 302 EEA 304
>gi|348618178|ref|ZP_08884709.1| DNA polymerase III, beta subunit [Candidatus Glomeribacter
gigasporarum BEG34]
gi|347816549|emb|CCD29411.1| DNA polymerase III, beta subunit [Candidatus Glomeribacter
gigasporarum BEG34]
Length = 367
Score = 270 bits (690), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 121/292 (41%), Positives = 192/292 (65%), Gaps = 2/292 (0%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
+ TE+N ++ PLQMV IVE+ + +PIL+++++ KN +++FL+TD +VQIT +G G
Sbjct: 4 IKTERNQLIPPLQMVSGIVERCHTMPILAHVMITKNGSELAFLATDLDVQITARADIGSG 63
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLN 124
S VAARK +DILR++P E V I + ++ + I++GKS+F LQTLDA ++P +
Sbjct: 64 PESAATTVAARKLLDILRAVPAGE-VQISVADQRLTIQAGKSRFALQTLDAGDFPTVAQA 122
Query: 125 SKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQ 184
+D ++QK K +L +F++AQQDIRYYL+ +LL+ + + AV++DGHRL +
Sbjct: 123 QTFDLSVQITQKAFKALLGCTHFAMAQQDIRYYLHAMLLAVEGGVLSAVATDGHRLAFAS 182
Query: 185 VNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGK 244
++ F + IIPR+TV LQRLLE + PV++ ++ NQ+K F+ +E ISK ID +
Sbjct: 183 TAVEGAFER-REWIIPRRTVLELQRLLEESDAPVKMDVAPNQVKFSFAQVEFISKRIDAR 241
Query: 245 FLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
F D++ VI Y ++F + ++L R +I+++DK KGVR +I P LKI
Sbjct: 242 FPDFQRVIPQGYTRAFNIGHAAFQQALARAAILTSDKFKGVRCLIAPGQLKI 293
>gi|429463092|ref|YP_007184555.1| DNA polymerase III subunit beta [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
gi|451811149|ref|YP_007447604.1| DNA polymerase III subunit beta [Candidatus Kinetoplastibacterium
crithidii TCC036E]
gi|429338606|gb|AFZ83029.1| DNA polymerase III subunit beta [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
gi|451776307|gb|AGF47306.1| DNA polymerase III subunit beta [Candidatus Kinetoplastibacterium
crithidii TCC036E]
Length = 369
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 134/302 (44%), Positives = 200/302 (66%), Gaps = 1/302 (0%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
+ T + ++ L ++ +VE++N +PILSN+L+ K+S K+SF++TD +VQ+TTY G
Sbjct: 4 LQTNRENLIKTLSNIVGVVERRNTMPILSNVLIKKSSNKLSFITTDIDVQMTTYADFGVP 63
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLN 124
+ I+ V ARK ++IL++LPE +V I I + + S KS+FTLQ+LDA ++P+M +
Sbjct: 64 SDDISTTVGARKLLEILKALPEMSQVIIEIFPGKINVLSEKSRFTLQSLDANDFPVMYSD 123
Query: 125 SKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQ 184
+D +SQ LK + NMVYFS+AQQDIRYYLNG+LL F I AV++DGHRL+Y
Sbjct: 124 DSWDVFVKMSQIELKSLFNMVYFSMAQQDIRYYLNGMLLVFDNGKISAVATDGHRLSYNS 183
Query: 185 VNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGK 244
V + F ++IIPRKTV +QRLL+ ++ + + +S QIK F +IE ISKL++GK
Sbjct: 184 V-LTNSFKGYKEVIIPRKTVLEIQRLLQENDDEISVAVSGMQIKFCFRDIEFISKLVEGK 242
Query: 245 FLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNRE 304
F D+ VI Y + F ++R+ SLQR +I++NDK KG+R N KI+ S+S E
Sbjct: 243 FPDFVKVIPQDYTRHFTIDRDLFHGSLQRAAILTNDKFKGIRFQFALNSFKISSSNSEHE 302
Query: 305 KA 306
+A
Sbjct: 303 EA 304
>gi|217968467|ref|YP_002353701.1| DNA polymerase III subunit beta [Thauera sp. MZ1T]
gi|217505794|gb|ACK52805.1| DNA polymerase III, beta subunit [Thauera sp. MZ1T]
Length = 369
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 203/304 (66%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ T ++A+L PLQ V IVEK++ LPILSN+L+ K++++++ L+TD E+QI T T
Sbjct: 2 LLLTTTRDALLAPLQSVAGIVEKRHTLPILSNVLIEKHADQLTMLATDIEIQIRTTTGGH 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G +I V ARK DILR+LP++ ++++ +++K + +K+G+S+F LQTL A +YP +
Sbjct: 62 IGGEDASITVGARKLQDILRALPDSAEISLTLDDKRLTVKAGRSRFQLQTLPAADYPRLN 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ ++ Q+T K L V +++AQQDIRYYLNGLLL + V++DGHRL Y
Sbjct: 122 PPTDAAAHLSIGQRTFKRQLAQVAYAMAQQDIRYYLNGLLLIADGGELRMVATDGHRLAY 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+++ ++ ++ I+PRKTV L R L + ++P+E+ ++ NQ F IE+++KLID
Sbjct: 182 AASDLEAPIATRTEAILPRKTVLELARQLADSDDPLEILLAGNQAVFRFGPIELVTKLID 241
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSN 302
GKF DY+ VI + K R LL +LQR +I++N+K +GVR+V++ L+I +++
Sbjct: 242 GKFPDYERVIPTAHPKLIHFARQPLLSALQRAAILTNEKFRGVRMVLEDGVLRIASTNAE 301
Query: 303 REKA 306
+E+A
Sbjct: 302 QEEA 305
>gi|421749492|ref|ZP_16186922.1| DNA polymerase III subunit beta [Cupriavidus necator HPC(L)]
gi|409771630|gb|EKN53867.1| DNA polymerase III subunit beta [Cupriavidus necator HPC(L)]
Length = 277
Score = 266 bits (681), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 122/255 (47%), Positives = 188/255 (73%), Gaps = 5/255 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQLV T ++ +L PLQ+V IVE+++ LPIL+N+L+ K+ +SFLSTD E+QITT+
Sbjct: 1 MQLV-KTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKSGANVSFLSTDIEIQITTHAE 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G G+ + VAARK +DILR++P+ + V + + +K M ++SGKS+F LQTL A+E+P
Sbjct: 60 CGVGSDDVATTVAARKLLDILRAMPDGD-VALSLSDKRMTVQSGKSRFALQTLAAEEFPT 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ ++++ TL QKT K +L MV+F++AQQDIRYYLNG+LL K ++AV++DGHRL
Sbjct: 119 VAEATEFNASVTLPQKTFKHLLAMVHFAMAQQDIRYYLNGMLLVVDGKKLMAVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCS---DIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
Y V ++++ + ++IIPRKT+ LQRLLE+ ++PV+++++ NQIK F+N+E+I
Sbjct: 179 AYCAVELEQEAAGAGARQEVIIPRKTILELQRLLEDNDDPVQVQLAANQIKFTFANVELI 238
Query: 238 SKLIDGKFLDYKYVI 252
SKL++GKF D++ VI
Sbjct: 239 SKLVEGKFPDFQRVI 253
>gi|358635057|dbj|BAL22354.1| DNA polymerase III, beta subunit [Azoarcus sp. KH32C]
Length = 367
Score = 266 bits (681), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 137/300 (45%), Positives = 196/300 (65%), Gaps = 4/300 (1%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++NT ++AIL PLQ V IVEK++ LPILSN+L+ K ++++ L+TD E+QI T T
Sbjct: 2 LLLNTNRDAILAPLQSVAGIVEKRHTLPILSNVLIEKRGDQLTMLATDIEIQIRTTTGGH 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G +I VAA+K DILR+LP E VT+ +++K + +K+G+S+F LQTL A +YP M
Sbjct: 62 IGGEDASITVAAKKLQDILRALPAGE-VTLTLDDKRLTVKAGRSRFALQTLPAADYPRMN 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
L FT+SQK K L V +++AQQDIRYYLNGLLL + V++DGHRL +
Sbjct: 121 LPEAEATRFTVSQKQFKRQLAQVAYAMAQQDIRYYLNGLLLIVAGTELRMVATDGHRLAF 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+ + + + I+PRKTV L R L + E+PVE+ ++ NQ+ F IE++SKLID
Sbjct: 181 AASALPVELARA-EAILPRKTVMELARQLADTEDPVEVILAGNQVVFRFGPIELVSKLID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSN 302
GKF DY+ VI + K R LL +L R++I++NDK +GVRLV+ LKI +S+N
Sbjct: 240 GKFPDYERVIPQNHPKMITFERAPLLATLSRVAILTNDKFRGVRLVLGDGSLKI--ASTN 297
>gi|319945019|ref|ZP_08019281.1| DNA-directed DNA polymerase III beta subunit [Lautropia mirabilis
ATCC 51599]
gi|319741589|gb|EFV94014.1| DNA-directed DNA polymerase III beta subunit [Lautropia mirabilis
ATCC 51599]
Length = 384
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 128/321 (39%), Positives = 208/321 (64%), Gaps = 19/321 (5%)
Query: 4 VVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGY 63
+++ ++A+L PLQ V I+EK++ PIL+N+L+ + E ++F TD E+Q+ T ++G
Sbjct: 3 IIHAPRDAVLKPLQTVAGIIEKRHTQPILANVLIRQQGEAVTFTGTDMEIQVRTQASIGA 62
Query: 64 GNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTL 123
G+ + V+A+K IDILR+LP+T+ VTI + + +K+ +S+F LQTL ++++P+M
Sbjct: 63 GSGTTATTVSAKKLIDILRALPDTD-VTIELNGNKLNLKTTRSRFALQTLPSEDFPVMKA 121
Query: 124 N---------------SKYDF--EFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQ 166
S D + TLSQK L+ +L MV+F++AQQDIR+YLNGLLL
Sbjct: 122 GATDQAGPGSGSAGDGSTADLRADVTLSQKKLRHLLQMVHFAMAQQDIRFYLNGLLLVLS 181
Query: 167 KKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQ 226
+ AV+++GHRL + + +++ + +D I+PRK+V L RLL + + PV ++I Q
Sbjct: 182 PAGMRAVATEGHRLAFCE-DVEVHAAGQADAILPRKSVLELLRLLGDSDEPVRMEIIGTQ 240
Query: 227 IKIIFSNIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVR 286
+++ F +IE ISKL++GKF DY+ VI Y+K + R L ++LQR SI+SN+K +GVR
Sbjct: 241 VRLRFGDIEFISKLLEGKFPDYQRVIPKGYQKVIELERETLAQALQRASILSNEKFRGVR 300
Query: 287 LVIKPNYLKITVSSSNREKAS 307
L + P L I S++ +E+AS
Sbjct: 301 LGLAPGRLGIQSSNTEQEEAS 321
>gi|119896294|ref|YP_931507.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
gi|119668707|emb|CAL92620.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
Length = 369
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 129/299 (43%), Positives = 195/299 (65%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++NT ++A+L PLQ V IVEK++ LPILSN+L+ K ++++ L+TD E+QI T TA
Sbjct: 2 LLLNTTRDALLAPLQSVAGIVEKRHTLPILSNVLIEKRGDQLTLLATDIEIQIRTTTAGH 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G +I V ARK DILR+L ++ + + +E+K + +K+GKS+F LQTL A +YP M
Sbjct: 62 IGGEDSSITVGARKLQDILRALSDSVDIVLTLEDKRLTVKAGKSRFQLQTLPAADYPRMN 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
L F++ Q+ K L V +S+AQQDIRYYLNGLLL + V++DGHRL Y
Sbjct: 122 LPDGDAVRFSVPQRAFKRQLAQVSYSMAQQDIRYYLNGLLLIADGSELRMVATDGHRLAY 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
++ + ++ I+PRKTV L R L + ++P+E+ ++ NQ F +IE+++KLID
Sbjct: 182 AAGDLAVPVQARTEAILPRKTVLELARQLADTDDPLEIILAGNQAVFRFGSIELVTKLID 241
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF DY+ VI + + +R LL SLQR +I++N+K +GVR+V+ LKI S++
Sbjct: 242 GKFPDYERVIPQNHPRMVTFDRQPLLASLQRAAILTNEKFRGVRMVLGEGALKIISSNT 300
>gi|71905644|ref|YP_283231.1| DNA polymerase III subunit beta [Dechloromonas aromatica RCB]
gi|71845265|gb|AAZ44761.1| DNA polymerase III, beta subunit [Dechloromonas aromatica RCB]
Length = 368
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 121/294 (41%), Positives = 202/294 (68%), Gaps = 1/294 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+++ T+++ +L PLQ V IVE+++ LPILSN+L+ K ++++ L+TD E+QITT T
Sbjct: 2 ILIKTQRDTLLAPLQSVSGIVERRHTLPILSNVLLEKKGDRLTLLATDIEIQITTSTECA 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G + V ARK +ILRSLP+T +V++ +E+K + +++GKS+F+LQTL A ++P MT
Sbjct: 62 GGEGDGAVTVGARKMQEILRSLPDTSEVSLVLEDKRLQVRAGKSRFSLQTLPADDFPRMT 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
++ +F++SQK + +++ +S+A QD+RYYLNGLLL + K + AV++DGHRL Y
Sbjct: 122 MSEGETKQFSISQKAFRQLISKTQYSMAAQDVRYYLNGLLLLVEGKELRAVATDGHRLAY 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
V ID ++I+PRKTV L RLL + ++ + + ++ NQ++ F ++ ++SKLID
Sbjct: 182 ASVEIDTDLPR-QEMILPRKTVLELNRLLVDTDDLLNITLTPNQVRFSFGSVVLVSKLID 240
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
GKF DY+ V+ + V R L++++QR +I++N+K +GVR+V+ N LK+
Sbjct: 241 GKFPDYERVVPATLKNHMKVGRQTLMQAMQRAAILTNEKFRGVRVVLGDNSLKL 294
>gi|74316020|ref|YP_313760.1| DNA polymerase III subunit beta [Thiobacillus denitrificans ATCC
25259]
gi|74055515|gb|AAZ95955.1| DNA polymerase III, beta chain [Thiobacillus denitrificans ATCC
25259]
Length = 367
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 122/305 (40%), Positives = 201/305 (65%), Gaps = 2/305 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ +E+NA+L L V+ +VE+++ LPILSN+L+ K + ++ L+TD E+Q++T
Sbjct: 2 LLIQSERNALLSALSAVVGVVERRHTLPILSNLLLEKKAGTLTLLATDLELQVSTRLEA- 60
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G I +AARK DI+R+LP++ V + ++ + + +GKS+FTLQTL A ++P +
Sbjct: 61 QGGDDFAITIAARKLFDIVRALPDSASVKLDTKDSQVVVSAGKSRFTLQTLPAADFPRVE 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ L QKTLK +L +V F++A QDIRYYLNG+LL + + V++DGHRL+Y
Sbjct: 121 TGAGVGTVVRLPQKTLKRLLQLVQFAMASQDIRYYLNGMLLVLDGQQLRVVATDGHRLSY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+ +D + ++IIPRKTV L +LL + + PVEL+I +NQ+ I+ E+++K++D
Sbjct: 181 AETTLDAP-TDAQEVIIPRKTVIELSKLLSDSDEPVELRIGSNQVTIMLPGTELVTKVVD 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSN 302
GKF DY+ VI + NR ++++LQR +I+SN+K +GVRLV+ N L I +++
Sbjct: 240 GKFPDYQRVIPANQPRHLKANRQTVVQALQRAAILSNEKFRGVRLVMSDNTLGIVCNNNE 299
Query: 303 REKAS 307
+E+A+
Sbjct: 300 QEEAA 304
>gi|334132411|ref|ZP_08506168.1| DNA polymerase III, beta subunit [Methyloversatilis universalis
FAM5]
gi|333442377|gb|EGK70347.1| DNA polymerase III, beta subunit [Methyloversatilis universalis
FAM5]
Length = 369
Score = 260 bits (665), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 130/298 (43%), Positives = 199/298 (66%), Gaps = 2/298 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTY-TAV 61
L++ E+ +L PLQ V IVEK++ LPILSN+L+ + ++ L+TD E+QI T T
Sbjct: 2 LLMKIEREQLLRPLQSVSGIVEKRHTLPILSNVLIDIEGDALTLLATDIEIQIRTRSTGS 61
Query: 62 GYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIM 121
++ VAARK DILR+LPE ++V++ + + + +++GKS+FTLQTL A++YP M
Sbjct: 62 ISAAQPASLTVAARKLQDILRALPEGQEVSLDADERKLTVRAGKSRFTLQTLPAQDYPRM 121
Query: 122 TLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLT 181
L + +LSQKTLK +L++V +S+AQQDIRYYLNGLLLS + + V++DGHRL
Sbjct: 122 QLADGETTKISLSQKTLKRLLSLVQYSMAQQDIRYYLNGLLLSVGDEEMRLVATDGHRLA 181
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
+ + + D+I+PRKTV L R L + ++PV++++ NQ ++ F ++E+I+KLI
Sbjct: 182 FVSEPL-PGVTGKLDVILPRKTVLELARQLADIDDPVDIELGANQARLRFGSVELITKLI 240
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
DGKF DY+ VI + K L+ R L +LQR +I++N+K KGVR+V+ LK+ S
Sbjct: 241 DGKFPDYERVIPKDHPKELLLQRATFLPALQRAAILTNEKFKGVRVVLSAGTLKLISS 298
>gi|56477035|ref|YP_158624.1| DNA polymerase III (Beta chain) [Aromatoleum aromaticum EbN1]
gi|56313078|emb|CAI07723.1| DNA polymerase III (Beta chain) [Aromatoleum aromaticum EbN1]
Length = 367
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 130/294 (44%), Positives = 194/294 (65%), Gaps = 2/294 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ T ++A+L PLQ V IVEK++ LPILSN+L+ K+ ++++ L+TD E+QI T TA
Sbjct: 2 LLLTTTRDALLAPLQSVAGIVEKRHTLPILSNVLIEKHGDQLTLLATDIEIQIRTTTAGH 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G +I VAARK DILR++PE + VT+ +++K + +K+G+S+F LQTL A +YP M
Sbjct: 62 IGGEDASITVAARKLQDILRAVPEGD-VTVMLDDKRLTVKAGRSRFALQTLPAADYPRMN 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
F++SQK+ K L V +++AQQDIRYYLNGLLL + V++DGHRL +
Sbjct: 121 PPDGDATHFSVSQKSFKRQLAQVAYAMAQQDIRYYLNGLLLIASGSELRMVATDGHRLAF 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+ +++I+PRKTV L R L + E+P+E+ ++ NQ+ F IE++SKLID
Sbjct: 181 ASNPLAGDVPH-TEVILPRKTVMELARQLADSEDPLEVILAGNQVVFRFGPIELVSKLID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
GKF DY+ VI + K R LL +L R++I++N+K +GVRLV+ LKI
Sbjct: 240 GKFPDYERVIPQNHPKLLTFERMPLLATLSRVAILTNEKFRGVRLVLGDGSLKI 293
>gi|332524902|ref|ZP_08401088.1| DNA polymerase III subunit beta [Rubrivivax benzoatilyticus JA2]
gi|332108197|gb|EGJ09421.1| DNA polymerase III subunit beta [Rubrivivax benzoatilyticus JA2]
Length = 369
Score = 257 bits (656), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 122/301 (40%), Positives = 193/301 (64%), Gaps = 4/301 (1%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ + +L LQ V IVE+++ LPIL+N+L+ KN + ++D E+Q+ T +G
Sbjct: 2 IVLKAAQEKLLEALQSVAGIVERRHTLPILANVLLRKNGPVVELTTSDLEIQVRTSAELG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
V ARK IDILR+LP + VT+ + + GKS+FTLQ+L A ++P++
Sbjct: 62 GDEGHFATTVGARKLIDILRALPAEQTVTLSSAQNKLTLAGGKSRFTLQSLPADDFPLV- 120
Query: 123 LNSKYDFE--FTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
N DF F++ QKTL+ ++N V+FS+A DIRYYLNG+L + K + V++DGHRL
Sbjct: 121 -NEAVDFGPTFSVPQKTLRQLINQVHFSMAVHDIRYYLNGILFIAEGKTLTLVATDGHRL 179
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
Q ++ + ++I+PRKTV LQRLL+++E P+E++ + NQ K FS +E ++KL
Sbjct: 180 ALAQGTLETDVPNRQEVILPRKTVLELQRLLKDEETPIEMRFAGNQAKFAFSGLEFVTKL 239
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF DY VI ++ + +V R LL SLQR +I++++K KGVRL ++P L+I S+
Sbjct: 240 VEGKFPDYNRVIPRNHKNALVVGRAALLGSLQRAAILTSEKFKGVRLNLEPGVLRIASSN 299
Query: 301 S 301
+
Sbjct: 300 A 300
>gi|375103385|ref|ZP_09749646.1| DNA polymerase III, beta subunit [Burkholderiales bacterium
JOSHI_001]
gi|374664116|gb|EHR68901.1| DNA polymerase III, beta subunit [Burkholderiales bacterium
JOSHI_001]
Length = 368
Score = 256 bits (655), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 120/299 (40%), Positives = 191/299 (63%), Gaps = 1/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ + +L LQ V IVE+++ LPIL+N+L+ KN ++ F ++D E+Q+ T +G
Sbjct: 2 IVLKAPQEKLLSALQSVAGIVERRHTLPILANVLLRKNGPQVEFTTSDLEIQVRTGADLG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
S + V ARK IDILR+LP + VT+ + + GKS+FTLQTL A+++P++
Sbjct: 62 GDTGSFSTTVGARKLIDILRTLPNDQVVTLSASGSKLTLTGGKSRFTLQTLPAEDFPLVN 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ F + QK L+ ++N V+F++A DIRYYLNG+L + K + V++DGHRL
Sbjct: 122 EAVDFGPAFAVPQKVLRSLINQVHFAMAVHDIRYYLNGILFVAEGKTLTLVATDGHRLGL 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
Q ++ ++I+PRKTV LQRLL++++ P+E++ + NQ K FS +E ++KL++
Sbjct: 182 AQATLETDIPK-QEVILPRKTVLELQRLLKDEDTPIEMRFAGNQAKFGFSGMEFVTKLVE 240
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF DY VI + F + R LL SLQR +I++++K KGVRL I+P L+I S++
Sbjct: 241 GKFPDYNRVIPKNQKNGFTLGRAGLLSSLQRAAILTSEKFKGVRLNIEPGTLRIASSNA 299
>gi|224827187|ref|ZP_03700282.1| DNA polymerase III, beta subunit [Pseudogulbenkiania ferrooxidans
2002]
gi|224600580|gb|EEG06768.1| DNA polymerase III, beta subunit [Pseudogulbenkiania ferrooxidans
2002]
Length = 368
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 122/299 (40%), Positives = 198/299 (66%), Gaps = 1/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ E++A+L PL V IVE+++ LPILSN+L+ K + FL+TD E+QITT +A
Sbjct: 2 LILQAERDALLKPLLAVTGIVERRHTLPILSNVLIEKKDGAVGFLATDLEIQITTASAET 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
S + +A+K DILR++P V++ ++ + +K+GKS+F LQTL A+++P+++
Sbjct: 62 LPGESFRLTTSAKKLQDILRAIPGNSTVSLEQQDNRLTLKAGKSRFNLQTLPAEDFPLLS 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+N + F+L QK LK +++ V +S+A QDIRYYLNGLL+ + V++DGHRL +
Sbjct: 122 VNGTPEATFSLPQKELKRLISQVQYSMAVQDIRYYLNGLLMQTDDNQVRLVATDGHRLAF 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
ID +++I+PRKT+ L +LL++ + P+ +++ NQ++ F + IISK++D
Sbjct: 182 AAAEIDTSLPK-AEVILPRKTIIELYKLLQDSDEPITIEVLANQVRFTFGSTVIISKVVD 240
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF DY VI +K FL++R L +LQR +I++N+K +GVRLV+KP L I ++S
Sbjct: 241 GKFPDYNRVIPLDNDKLFLIDRLTFLHALQRAAILANEKFRGVRLVLKPGSLSILCTNS 299
>gi|347537841|ref|YP_004845265.1| DNA polymerase III subunit beta [Pseudogulbenkiania sp. NH8B]
gi|345641018|dbj|BAK74851.1| DNA polymerase III, beta subunit [Pseudogulbenkiania sp. NH8B]
Length = 368
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 122/299 (40%), Positives = 198/299 (66%), Gaps = 1/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ E++A+L PL V IVE+++ LPILSN+L+ K + FL+TD E+QITT +A
Sbjct: 2 LILQAERDALLKPLLAVTGIVERRHTLPILSNVLIEKKDGAVGFLATDLEIQITTASAET 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
S + +A+K DILR++P V++ ++ + +K+GKS+F LQTL A+++P+++
Sbjct: 62 LPGESFRLTTSAKKLQDILRAIPGNSTVSLEQQDNRLTLKAGKSRFNLQTLPAEDFPLLS 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+N + F+L QK LK +++ V +S+A QDIRYYLNGLL+ + V++DGHRL +
Sbjct: 122 VNGTPEATFSLPQKELKRLISQVQYSMAVQDIRYYLNGLLMQTDDNQVRLVATDGHRLAF 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
ID +++I+PRKT+ L +LL++ + P+ +++ NQ++ F + IISK++D
Sbjct: 182 AAAEIDTSLPK-AEVILPRKTIIELYKLLQDSDEPITIEVLANQVRFTFGSTVIISKVVD 240
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF DY VI +K FL++R L +LQR +I++N+K +GVRLV+KP L I ++S
Sbjct: 241 GKFPDYNRVIPLDNDKLFLIDRLTFLHALQRAAILANEKFRGVRLVLKPGSLSILCTNS 299
>gi|383755861|ref|YP_005434846.1| DNA polymerase III beta subunit DnaN [Rubrivivax gelatinosus IL144]
gi|381376530|dbj|BAL93347.1| DNA polymerase III beta subunit DnaN [Rubrivivax gelatinosus IL144]
Length = 369
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 121/301 (40%), Positives = 193/301 (64%), Gaps = 4/301 (1%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ + +L LQ V IVE+++ LPIL+N+L+ KN + ++D E+Q+ T +G
Sbjct: 2 IVLKAAQEKLLEALQSVAGIVERRHTLPILANVLLRKNGPVVELTTSDLEIQVRTSAELG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
V ARK IDILR+LP + VT+ + + GKS+FTLQ+L A ++P++
Sbjct: 62 GDEGHFATTVGARKLIDILRALPSEQVVTLSSAQNKLTLAGGKSRFTLQSLPADDFPLV- 120
Query: 123 LNSKYDF--EFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
N DF F++ QKTL+ ++N V+F++A DIRYYLNG+L + K + V++DGHRL
Sbjct: 121 -NEAVDFGPAFSVPQKTLRQLINQVHFAMAVHDIRYYLNGILFIAEGKTLTLVATDGHRL 179
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
Q ++ + ++I+PRKTV LQRLL+++E P+E++ + NQ K FS +E ++KL
Sbjct: 180 ALAQGTLETDVPNRQEVILPRKTVLELQRLLKDEETPIEMRFAGNQAKFAFSGLEFVTKL 239
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++GKF DY VI ++ + +V R LL SLQR +I++++K KGVRL ++P L+I S+
Sbjct: 240 VEGKFPDYNRVIPRNHKNALVVGRAALLGSLQRAAILTSEKFKGVRLNLEPGVLRIASSN 299
Query: 301 S 301
+
Sbjct: 300 A 300
>gi|257091665|ref|YP_003165306.1| DNA polymerase III subunit beta [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257044189|gb|ACV33377.1| DNA polymerase III, beta subunit [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 376
Score = 253 bits (646), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 124/303 (40%), Positives = 200/303 (66%), Gaps = 11/303 (3%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYT--A 60
L++ T ++ +L PLQ V IVE+++ LPILSN+L+ K + ++ L+TD E+QITT++ A
Sbjct: 2 LLIKTRRDTLLGPLQAVSGIVERRHTLPILSNVLLEKRGDVLTLLATDIEIQITTWSTGA 61
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
VG G+ ++ V ARK +ILRSLPE+ V++ +++K + + +GKS+F+LQTL A ++P
Sbjct: 62 VGEGDGAVT--VGARKLQEILRSLPESADVSLILDDKRLQLTAGKSRFSLQTLPADDFPC 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
M L+ +FT+SQK + +L +S+A QD+RYYLNGLLL + AV++DGHRL
Sbjct: 120 MALSEGETKKFTVSQKQFRHLLAQTQYSMAAQDVRYYLNGLLLIVDGSELRAVATDGHRL 179
Query: 181 TYYQVNID-------KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSN 233
Y + +D + ++ ++I+PRKTV L RLL + + P+ +++ QI+ F +
Sbjct: 180 AYSSMPLDDAAQAPREPGAARQELIVPRKTVLELSRLLTDTDEPLSIEMLATQIRFQFGH 239
Query: 234 IEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNY 293
+ ++SKLIDG+F DY+ VI V+R LL+S+ R +I++N+K +GVRL++
Sbjct: 240 VSLVSKLIDGRFPDYERVIPATLRNVVSVSRGLLLQSMIRAAILTNEKFRGVRLILSAGS 299
Query: 294 LKI 296
LKI
Sbjct: 300 LKI 302
>gi|325980883|ref|YP_004293285.1| DNA polymerase III subunit beta [Nitrosomonas sp. AL212]
gi|325530402|gb|ADZ25123.1| DNA polymerase III, beta subunit [Nitrosomonas sp. AL212]
Length = 371
Score = 253 bits (646), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 133/297 (44%), Positives = 197/297 (66%), Gaps = 4/297 (1%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ T ++ +L PLQ V IVE++ LPILSN+L+ +N EK SFL+TD E+QI T A
Sbjct: 2 LLIKTNRDTLLKPLQTVTGIVERRQTLPILSNVLIRQNQEKTSFLTTDLEIQIKTEVAES 61
Query: 63 YGNS-SINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIM 121
+ V+A+K DILRSL +VT+ ++ H+ +KS KS F LQ L A+++P +
Sbjct: 62 LSSQKDFAFTVSAKKLQDILRSLSADIEVTLTRKDDHLLVKSHKSAFNLQILPAEDFPEV 121
Query: 122 TLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLT 181
T + D TL+QK K +L++V F++AQQDIRYYLNGLLL K +I+V +DGHRL
Sbjct: 122 TEEPESDNAVTLTQKEFKDLLHLVQFAVAQQDIRYYLNGLLLLIDGKQLISVGTDGHRLA 181
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
+ +DK ++I+PRK VF L +LL + E+P++++ N+++ FS+I +ISK+I
Sbjct: 182 FVSTGLDKA-QKKQEVILPRKAVFELSKLLHDNEDPIKIEYFQNKVRFSFSDITLISKII 240
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISN--DKLKGVRLVIKPNYLKI 296
DGKF DY VI + K F +NR L++LQR+SI+SN DK +GVRL++ + L+I
Sbjct: 241 DGKFPDYNRVIPTRNNKLFEINRLVFLQALQRVSILSNQSDKFRGVRLIVNKDNLRI 297
>gi|260221775|emb|CBA30676.1| DNA polymerase III subunit beta [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 362
Score = 253 bits (645), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 119/304 (39%), Positives = 195/304 (64%), Gaps = 1/304 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ ++ +L LQ V IVE+++ LPIL+N+L+ K + ++D E+QI T +G
Sbjct: 2 IVLKATQDKVLSVLQSVAGIVERRHTLPILANVLLRKTGTSLQLTTSDLEIQIRTTAELG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
S + ARK IDILR++P + V++ + +K GKSKFTLQT+ A+++P++
Sbjct: 62 GDTGSFTTTIGARKLIDILRTMPGDQTVSLESSQSKIILKGGKSKFTLQTMQAEDFPLVQ 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
++ + F++ QKTLK +L+ V F++A DIRYYLNG+L + K + V++DGHRL +
Sbjct: 122 ESASFGPVFSVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFVAEGKQLSLVATDGHRLAF 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+D + ++I+PRKTV LQRLL + E +E++ +NNQ K F +E ++KL++
Sbjct: 182 ASATLDVEVPK-QEVILPRKTVIELQRLLSDAEGAIEMQFANNQAKFTFDGMEFVTKLVE 240
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSN 302
GKF DY VI ++ S + R LL++LQR +I+++DK KGVRL I P L++ +++
Sbjct: 241 GKFPDYNRVIPKNHKNSITLGREALLKTLQRTAILTSDKFKGVRLNIDPGSLRVASNNAE 300
Query: 303 REKA 306
+E+A
Sbjct: 301 QEEA 304
>gi|339481524|ref|YP_004693310.1| DNA polymerase III subunit beta [Nitrosomonas sp. Is79A3]
gi|338803669|gb|AEI99910.1| DNA polymerase III, beta subunit [Nitrosomonas sp. Is79A3]
Length = 371
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 133/297 (44%), Positives = 198/297 (66%), Gaps = 4/297 (1%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ T ++ +L PLQ V IVE++ LPILSN+L+ +N EK SFL+TD E+QI T T
Sbjct: 2 LLIKTNRDTLLKPLQTVTGIVERRQTLPILSNVLIQQNEEKTSFLTTDLEIQIKTVTTKD 61
Query: 63 YGN-SSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIM 121
+ + + V+A+K DILRSL ++T+ ++ H+ +KSGKS F LQ L A ++P +
Sbjct: 62 LSSKQNFALTVSAKKLQDILRSLSSDAEITLTQKDDHLQVKSGKSAFNLQILPAADFPEV 121
Query: 122 TLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLT 181
S+ D TL Q LK +L+ V F++AQQDIRYYLNGLLL + K +I+V +DGHRL
Sbjct: 122 VEESESDATITLKQNELKNLLHQVQFAVAQQDIRYYLNGLLLLTEDKQLISVGTDGHRLA 181
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
Y +D + ++I+PRK VF L +LLE+KE+PV+++ N+++ FS+I + SK+I
Sbjct: 182 YIAAGLDTE-QKRQEVILPRKAVFELSKLLEDKEDPVKIEYFQNKVRFSFSDIILTSKII 240
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISN--DKLKGVRLVIKPNYLKI 296
DGKF DY VI + K F ++R L++LQR+SI+SN +K +GVRL++ + L I
Sbjct: 241 DGKFPDYNRVIPTRNTKLFEIDRLIFLQALQRVSILSNQSEKFRGVRLIVSTDNLHI 297
>gi|81251089|gb|ABB69888.1| DNA polymerase III beta chain [Nitrosovibrio sp. FJI82]
Length = 370
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 129/301 (42%), Positives = 200/301 (66%), Gaps = 3/301 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+++ T K+A+L PLQ V IVE+++ LPILSN+L+ + E+ISF +TD E+QI T
Sbjct: 2 ILIQTNKDALLKPLQAVTGIVERRHTLPILSNVLIERKREEISFTATDLEIQIATTAPDS 61
Query: 63 YGNS--SINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
S + I VAA+K DILR+LP+ +VT+ + + +K+GKS+F LQTL A+++P
Sbjct: 62 KDESKQTSAITVAAKKLQDILRALPDNVQVTLEAQENRLQVKAGKSRFNLQTLPAEDFPR 121
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ +S + TL QK LK +L +V +++AQQDIRYYLNGLLL + ++ V++DGHRL
Sbjct: 122 LPESSTPQAKITLPQKELKNLLFLVQYAMAQQDIRYYLNGLLLLVEADHLKVVATDGHRL 181
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + + + ++I+PRK V L + L + E PV +++ NQ++ FSNI ++SK+
Sbjct: 182 GFASIVMSQPREK-KEVILPRKAVLELAKQLHDSEEPVTVELLQNQVRFTFSNIVLVSKV 240
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
+DGKF DY VI Y+K F +NR L++LQR SI+SN+K +GVRL++ L+I S+
Sbjct: 241 VDGKFPDYNRVIPVGYQKQFTLNRVTFLQTLQRASILSNEKFRGVRLILTAGNLQIVCSN 300
Query: 301 S 301
+
Sbjct: 301 N 301
>gi|81251093|gb|ABB69891.1| DNA polymerase III beta chain [Nitrosovibrio sp. RY3C]
Length = 370
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 129/301 (42%), Positives = 200/301 (66%), Gaps = 3/301 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+++ T K+A+L PLQ V IVE+++ LPILSN+L+ + E+ISF +TD E+QI T
Sbjct: 2 ILIQTNKDALLKPLQAVTGIVERRHTLPILSNVLIERKREEISFTATDLEIQIATTAPDS 61
Query: 63 YGNS--SINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
S + I VAA+K DILR+LP+ +VT+ + + +K+GKS+F LQTL A+++P
Sbjct: 62 KDESKQTSAITVAAKKLQDILRALPDNVQVTLEAQENRLQVKAGKSRFNLQTLPAEDFPR 121
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ +S + TL QK LK +L +V +++AQQDIRYYLNGLLL + ++ V++DGHRL
Sbjct: 122 LPESSTPQAKITLPQKELKNLLFLVQYAMAQQDIRYYLNGLLLLVEADHLKVVATDGHRL 181
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + + + ++I+PRK V L + L + E PV +++ NQ++ FSNI ++SK+
Sbjct: 182 GFASIVMSQP-QEKKEVILPRKAVLELAKQLHDSEEPVTVELLQNQVRFTFSNIVLVSKV 240
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
+DGKF DY VI Y+K F +NR L++LQR SI+SN+K +GVRL++ L+I S+
Sbjct: 241 VDGKFPDYNRVIPVGYQKQFTLNRVTFLQTLQRASILSNEKFRGVRLILTAGNLQIVCSN 300
Query: 301 S 301
+
Sbjct: 301 N 301
>gi|319760740|ref|YP_004124677.1| DNA polymerase III subunit beta [Alicycliphilus denitrificans BC]
gi|330822655|ref|YP_004385958.1| DNA polymerase III subunit beta [Alicycliphilus denitrificans K601]
gi|317115301|gb|ADU97789.1| DNA polymerase III, beta subunit [Alicycliphilus denitrificans BC]
gi|329308027|gb|AEB82442.1| DNA polymerase III, beta subunit [Alicycliphilus denitrificans
K601]
Length = 368
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/308 (39%), Positives = 194/308 (62%), Gaps = 3/308 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ ++ +L LQ V IVE+++ LPIL+N+L+ K + F ++D E+QI T +G
Sbjct: 2 IVLKATQDKVLAVLQSVSGIVERRHTLPILANVLIRKTGNALQFTTSDLEIQIRTTAELG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
V ARK IDIL+++P + V++ + +K GKS+FTLQTL A+++P++
Sbjct: 62 GDTGDFTTTVGARKLIDILKTMPADQTVSLENSQTKLILKGGKSRFTLQTLPAEDFPLVQ 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ + F++ QKTLK +L+ V F++A QDIRYYLNG+L + K + V++DGHRL +
Sbjct: 122 EAASFGPAFSVPQKTLKTLLSQVSFAMAVQDIRYYLNGILFVAEGKTLSLVATDGHRLAF 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+D + ++I+PRKTV LQRLL + + +E++ +NNQ K F +E ++KL++
Sbjct: 182 ASSELDMEVPK-QEVILPRKTVLELQRLLSDADGAIEMRFANNQAKFGFGGMEFVTKLVE 240
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSN 302
GKF DY VI + + R LL SLQR +I++++K KGVRL I+P L+ V+SSN
Sbjct: 241 GKFPDYNRVIPRNHHNVITLGRAPLLASLQRTAIMTSEKFKGVRLNIEPGSLR--VASSN 298
Query: 303 REKASSTD 310
E+ + D
Sbjct: 299 AEQEEAVD 306
>gi|222109227|ref|YP_002551491.1| DNA polymerase III subunit beta [Acidovorax ebreus TPSY]
gi|221728671|gb|ACM31491.1| DNA polymerase III, beta subunit [Acidovorax ebreus TPSY]
Length = 368
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 121/308 (39%), Positives = 191/308 (62%), Gaps = 3/308 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ ++ +L LQ V IVE+++ LPIL+N+L+ K I ++D E+QI T +G
Sbjct: 2 IVLKATQDKVLAVLQSVAGIVERRHTLPILANVLLRKTGNAIQLTTSDLEIQIRTTAELG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
V ARK IDIL+++P + V++ + +K GKS+FTLQTL A+++P++
Sbjct: 62 GDTGDFTTTVGARKLIDILKTMPADQTVSLESNQSKLILKGGKSRFTLQTLPAEDFPLVQ 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ + F++ QK LK +L V F++A QDIRYYLNG+L + + V++DGHRL +
Sbjct: 122 EAASFGPAFSVPQKVLKSLLGQVSFAMAVQDIRYYLNGILFVAEGTTLSLVATDGHRLAF 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+D + ++I+PRKTV LQRLL + + +E++ +NNQ K F +E ++KL++
Sbjct: 182 ASAQLDVEVPK-QEVILPRKTVLELQRLLSDADGAIEMQFANNQAKFSFGGMEFVTKLVE 240
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSN 302
GKF DY VI + S + R LL SLQR +I+++DK KGVRL I+P L+ V+S+N
Sbjct: 241 GKFPDYNRVIPKNHHNSVTLGRAPLLASLQRTAIMTSDKFKGVRLNIEPGLLR--VASNN 298
Query: 303 REKASSTD 310
E+ + D
Sbjct: 299 AEQEEAVD 306
>gi|121596426|ref|YP_988322.1| DNA polymerase III subunit beta [Acidovorax sp. JS42]
gi|120608506|gb|ABM44246.1| DNA polymerase III, beta subunit [Acidovorax sp. JS42]
Length = 368
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 121/308 (39%), Positives = 191/308 (62%), Gaps = 3/308 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ ++ +L LQ V IVE+++ LPIL+N+L+ K I ++D E+QI T +G
Sbjct: 2 IVLKATQDKVLAVLQSVAGIVERRHTLPILANVLLRKTGNAIQLTTSDLEIQIRTTAELG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
V ARK IDIL+++P + V++ + +K GKS+FTLQTL A+++P++
Sbjct: 62 GDTGDFTTTVGARKLIDILKTMPSDQTVSLESNQSKLILKGGKSRFTLQTLPAEDFPLVQ 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ + F++ QK LK +L V F++A QDIRYYLNG+L + + V++DGHRL +
Sbjct: 122 EAASFGPAFSVPQKVLKSLLGQVSFAMAVQDIRYYLNGILFVAEGTTLSLVATDGHRLAF 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+D + ++I+PRKTV LQRLL + + +E++ +NNQ K F +E ++KL++
Sbjct: 182 ASAQLDVEVPK-QEVILPRKTVLELQRLLSDADGAIEMQFANNQAKFSFGGMEFVTKLVE 240
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSN 302
GKF DY VI + S + R LL SLQR +I+++DK KGVRL I+P L+ V+S+N
Sbjct: 241 GKFPDYNRVIPKNHHNSVTLGRAPLLASLQRTAIMTSDKFKGVRLNIEPGLLR--VASNN 298
Query: 303 REKASSTD 310
E+ + D
Sbjct: 299 AEQEEAVD 306
>gi|398810617|ref|ZP_10569431.1| DNA polymerase III, beta subunit [Variovorax sp. CF313]
gi|398082474|gb|EJL73223.1| DNA polymerase III, beta subunit [Variovorax sp. CF313]
Length = 368
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 118/304 (38%), Positives = 195/304 (64%), Gaps = 1/304 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ ++ +L LQ V IVE+++ LPIL+N+L+ K ++ ++D E+QI T +G
Sbjct: 2 IVLKANQDKVLAALQSVAGIVERRHTLPILANVLIRKTGGQLQLTTSDLEIQIRTTAELG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
S + ARK IDILR++P + V++ + +K GKS+FTLQ+L A+++P++
Sbjct: 62 GDEGSFTTTIGARKLIDILRTMPADQTVSLESSASKLVLKGGKSRFTLQSLPAEDFPLVQ 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ + F++ QKTLK +L+ V F++A DIRYYLNG+L + K + V++DGHRL +
Sbjct: 122 EAANFGPVFSVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFVAEGKQLSLVATDGHRLAF 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+D + ++I+PRKTV +QRLL + E +E++ +NNQ K F +E ++KL++
Sbjct: 182 SSAMLDVEVPR-QEVILPRKTVIEMQRLLSDAEGAIEMQFANNQAKFSFGGMEFVTKLVE 240
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSN 302
GKF DY VI ++ S + R LL SLQR +I++++K KGVRL I+P L+I +++
Sbjct: 241 GKFPDYNRVIPKNHKNSVTLGRAPLLASLQRTAILTSEKFKGVRLNIEPGTLRIASNNAE 300
Query: 303 REKA 306
+E+A
Sbjct: 301 QEEA 304
>gi|239813021|ref|YP_002941931.1| DNA polymerase III subunit beta [Variovorax paradoxus S110]
gi|239799598|gb|ACS16665.1| DNA polymerase III, beta subunit [Variovorax paradoxus S110]
Length = 368
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 117/304 (38%), Positives = 195/304 (64%), Gaps = 1/304 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ ++ +L LQ V IVE+++ LPIL+N+L+ K ++ ++D E+QI T +G
Sbjct: 2 IVLKATQDKVLAALQSVAGIVERRHTLPILANVLIRKTGGQLQLTTSDLEIQIRTTAELG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ + ARK IDILR++P + V++ + +K GKS+FTLQ+L A+++P++
Sbjct: 62 GDEGNFTTTIGARKLIDILRTMPADQTVSLESSASKLVLKGGKSRFTLQSLPAEDFPLVQ 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ + F++ QKTLK +L+ V F++A DIRYYLNG+L + K + V++DGHRL +
Sbjct: 122 EAANFGPVFSVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFVAEGKQLSLVATDGHRLAF 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+D + ++I+PRKTV +QRLL + E +E++ +NNQ K F +E ++KL++
Sbjct: 182 SSATLDVEVPR-QEVILPRKTVLEMQRLLSDAEGAIEMQFANNQAKFSFGGMEFVTKLVE 240
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSN 302
GKF DY VI ++ S + R LL SLQR +I++++K KGVRL I+P L+I +++
Sbjct: 241 GKFPDYNRVIPKNHKNSVTLGRAPLLASLQRTAILTSEKFKGVRLNIEPGTLRIASNNAE 300
Query: 303 REKA 306
+E+A
Sbjct: 301 QEEA 304
>gi|264676138|ref|YP_003276044.1| DNA polymerase III subunit beta [Comamonas testosteroni CNB-2]
gi|299530929|ref|ZP_07044343.1| DNA polymerase III, beta subunit [Comamonas testosteroni S44]
gi|418528255|ref|ZP_13094205.1| DNA polymerase III subunit beta [Comamonas testosteroni ATCC 11996]
gi|262206650|gb|ACY30748.1| DNA polymerase III, beta subunit [Comamonas testosteroni CNB-2]
gi|298721150|gb|EFI62093.1| DNA polymerase III, beta subunit [Comamonas testosteroni S44]
gi|371454631|gb|EHN67633.1| DNA polymerase III subunit beta [Comamonas testosteroni ATCC 11996]
Length = 373
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 120/308 (38%), Positives = 194/308 (62%), Gaps = 4/308 (1%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ ++ +L LQ V IVE+++ LPIL+N+L+ K + ++D E+QI T +G
Sbjct: 2 IVLKATQDKVLAVLQSVAGIVERRHTLPILANVLIKKTGNALQLTTSDLEIQIRTTAELG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ ARK IDIL+++P + V++ + M +K GKS+FTLQTL A+++P++
Sbjct: 62 GDAGDFTTTIGARKLIDILKTMPGDQTVSLETQQSKMILKGGKSRFTLQTLPAEDFPLVQ 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
++ + F++ QK LK +L V F++A QDIRYYLNG+L + + V++DGHRL +
Sbjct: 122 ESAAFGPAFSVPQKVLKDLLGQVSFAMAVQDIRYYLNGILFVAEGNTLSLVATDGHRLAW 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENK--EN-PV-ELKISNNQIKIIFSNIEIIS 238
+D + ++I+PRKTV LQRLL + EN PV E++ +NNQ K F +E ++
Sbjct: 182 ASATLDVEVPIKQEVILPRKTVLELQRLLSDASGENQPVIEMQFANNQAKFTFGGMEFVT 241
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KL++GKF DY VI + S + R LL SLQR +I+++DK KGVRL ++P L++
Sbjct: 242 KLVEGKFPDYNRVIPRNHTNSVTLGRAPLLASLQRTAIMTSDKFKGVRLSVEPGTLRVAS 301
Query: 299 SSSNREKA 306
+++ +E+A
Sbjct: 302 NNAEQEEA 309
>gi|221069746|ref|ZP_03545851.1| DNA polymerase III, beta subunit [Comamonas testosteroni KF-1]
gi|220714769|gb|EED70137.1| DNA polymerase III, beta subunit [Comamonas testosteroni KF-1]
Length = 373
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 120/308 (38%), Positives = 194/308 (62%), Gaps = 4/308 (1%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ ++ +L LQ V IVE+++ LPIL+N+L+ K + ++D E+QI T +G
Sbjct: 2 IVLKATQDKVLAVLQSVAGIVERRHTLPILANVLIKKTGNALQLTTSDLEIQIRTTAELG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ ARK IDIL+++P + V++ + M +K GKS+FTLQTL A+++P++
Sbjct: 62 GDAGDFTTTIGARKLIDILKTMPGDQTVSLETQQAKMILKGGKSRFTLQTLPAEDFPLVQ 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
++ + F++ QK LK +L V F++A QDIRYYLNG+L + + V++DGHRL +
Sbjct: 122 ESAAFGPAFSVPQKVLKDLLGQVSFAMAVQDIRYYLNGILFVAEGNTLSLVATDGHRLAW 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENK--EN-PV-ELKISNNQIKIIFSNIEIIS 238
+D + ++I+PRKTV LQRLL + EN PV E++ +NNQ K F +E ++
Sbjct: 182 ASATLDVEVPIKQEVILPRKTVLELQRLLSDASGENQPVIEMQFANNQAKFTFGGMEFVT 241
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KL++GKF DY VI + S + R LL SLQR +I+++DK KGVRL ++P L++
Sbjct: 242 KLVEGKFPDYNRVIPRNHTNSVTLGRAPLLASLQRTAIMTSDKFKGVRLSVEPGTLRVAS 301
Query: 299 SSSNREKA 306
+++ +E+A
Sbjct: 302 NNAEQEEA 309
>gi|160895452|ref|YP_001561034.1| DNA polymerase III subunit beta [Delftia acidovorans SPH-1]
gi|333911669|ref|YP_004485401.1| DNA polymerase III subunit beta [Delftia sp. Cs1-4]
gi|160361036|gb|ABX32649.1| DNA polymerase III, beta subunit [Delftia acidovorans SPH-1]
gi|333741869|gb|AEF87046.1| DNA polymerase III, beta subunit [Delftia sp. Cs1-4]
Length = 372
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 194/309 (62%), Gaps = 7/309 (2%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ ++ +L LQ V IVE+++ LPIL+N+L+ K + ++D E+QI T +G
Sbjct: 2 IVLKATQDKVLAVLQSVSGIVERRHTLPILANVLIKKTGNALQLTTSDLEIQIRTTAELG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
V ARK IDIL+++P + V++ + M +K GKS+FTLQTL A+++P++
Sbjct: 62 GDTGDFTTTVGARKLIDILKTMPGDQTVSLETQQAKMVLKGGKSRFTLQTLPAEDFPLVQ 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ + F++ QK LK +L V F++A QDIRYYLNG+L + K + V++DGHRL +
Sbjct: 122 EAAAFGPSFSVPQKVLKDLLGQVSFAMAVQDIRYYLNGILFVAEGKQLSLVATDGHRLAF 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLL-----ENKENPVELKISNNQIKIIFSNIEII 237
+D + ++I+PRKTV LQRLL EN+ + +E++ +NNQ K F +E +
Sbjct: 182 ASSQLDVEVPK-QEVILPRKTVLELQRLLSDAGGENQPH-IEMQFANNQAKFTFGGMEFV 239
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
+KL++GKF DY VI + S + R LL SLQR +I+++DK KGVRL ++P L++
Sbjct: 240 TKLVEGKFPDYNRVIPRNHTNSVTLGRAPLLASLQRTAIMTSDKFKGVRLTVEPGTLRVA 299
Query: 298 VSSSNREKA 306
+++ +E+A
Sbjct: 300 SNNAEQEEA 308
>gi|319790696|ref|YP_004152336.1| DNA polymerase iii subunit beta [Variovorax paradoxus EPS]
gi|315593159|gb|ADU34225.1| DNA polymerase III, beta subunit [Variovorax paradoxus EPS]
Length = 368
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 116/304 (38%), Positives = 195/304 (64%), Gaps = 1/304 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ ++ +L LQ V IVE+++ LPIL+N+L+ K ++ ++D E+QI T +G
Sbjct: 2 IVLKATQDKVLAALQSVSGIVERRHTLPILANVLIRKTGGQLQLTTSDLEIQIRTTAELG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ + ARK IDILR++P + V++ + +K GKS+FTLQ+L A+++P++
Sbjct: 62 GDEGNFTTTIGARKLIDILRTMPADQTVSLESSASKLVLKGGKSRFTLQSLPAEDFPLVQ 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ + F++ QKTLK +L+ V F++A DIRYYLNG+L + K + V++DGHRL +
Sbjct: 122 EAANFGPVFSVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFVAEGKQLSLVATDGHRLAF 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+D + ++I+PRKTV +QRLL + E +E++ +NNQ K F +E ++KL++
Sbjct: 182 SSAMLDVEVPR-QEVILPRKTVLEMQRLLSDAEGAIEMQFANNQAKFSFGGMEFVTKLVE 240
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSN 302
GKF DY VI ++ + + R LL SLQR +I++++K KGVRL I+P L+I +++
Sbjct: 241 GKFPDYNRVIPKNHKNTVTLGRAPLLASLQRTAILTSEKFKGVRLNIEPGTLRIASNNAE 300
Query: 303 REKA 306
+E+A
Sbjct: 301 QEEA 304
>gi|332531210|ref|ZP_08407123.1| DNA polymerase III subunit beta [Hylemonella gracilis ATCC 19624]
gi|332039317|gb|EGI75730.1| DNA polymerase III subunit beta [Hylemonella gracilis ATCC 19624]
Length = 368
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 118/304 (38%), Positives = 193/304 (63%), Gaps = 1/304 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ ++ +L LQ V IVE+++ LPIL+N+++ ++ + ++D E+QI T
Sbjct: 2 IVLKASQDKVLSVLQSVAGIVERRHTLPILANVMLRRSGNAVQLTTSDLEIQIRTVAEFE 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ + V ARK IDILR+LP + VT+ + +K GKSKFTLQ+L A+++P++
Sbjct: 62 GDSGNFTTTVGARKLIDILRTLPSDQTVTLESSQNKLVLKGGKSKFTLQSLPAEDFPLVQ 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ + +F++ QKTLK +L V FS+A DIRYYLNG+L + + + V++DGHRL +
Sbjct: 122 EAANFGPKFSVPQKTLKELLGQVSFSMAVHDIRYYLNGILFVAEGQQLSLVATDGHRLAF 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+D + ++I+PRKTV LQRLL + E +E++ + NQ K F +E ++KL++
Sbjct: 182 ASATLDVEVPK-QEVILPRKTVLELQRLLSDNEGAIEMQFAGNQAKFSFGGMEFVTKLVE 240
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSN 302
GKF DY VI ++ ++ R LL SLQR +I+++DK KGVRL I+P L+I +++
Sbjct: 241 GKFPDYNRVIPKNHKNIIVLGRQPLLASLQRAAILTSDKFKGVRLNIEPGTLRIASTNAE 300
Query: 303 REKA 306
+E+A
Sbjct: 301 QEEA 304
>gi|365091742|ref|ZP_09329097.1| DNA polymerase III subunit beta [Acidovorax sp. NO-1]
gi|363416053|gb|EHL23177.1| DNA polymerase III subunit beta [Acidovorax sp. NO-1]
Length = 372
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/313 (39%), Positives = 197/313 (62%), Gaps = 9/313 (2%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ ++ +L LQ V IVE+++ LPIL+N+L+ K + ++D E+QI T +G
Sbjct: 2 IVLKATQDKVLAVLQSVAGIVERRHTLPILANVLIRKTGNALQLTTSDLEIQIRTTAELG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
V ARK IDILR++P + V++ + + +K GKS+FTLQ+L A+++P++
Sbjct: 62 GDTGDFTTTVGARKLIDILRTMPGDQTVSLESQASKLVLKGGKSRFTLQSLPAEDFPLVQ 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
++ + F + QKTLK +L V F++A QDIRYYLNG+L + K + V++DGHRL +
Sbjct: 122 ESAAFGPVFAVPQKTLKDLLGQVSFAMAVQDIRYYLNGILFVAEGKTLSLVATDGHRLAF 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLL-----ENKENPVELKISNNQIKIIFSNIEII 237
+D + ++I+PRKTV LQRLL EN+ + +E++ +NNQ K F +E +
Sbjct: 182 ASATLDVEVPK-QEVILPRKTVIELQRLLSDAGGENQPH-IEMQFANNQAKFTFGGMEFV 239
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
+KL++GKF DY VI ++ S + R LL SLQR +I+++DK KGVRL ++P L+
Sbjct: 240 TKLVEGKFPDYNRVIPKNHKNSITLGRAPLLASLQRTAIMTSDKFKGVRLNLEPGTLR-- 297
Query: 298 VSSSNREKASSTD 310
V+S+N E+ + D
Sbjct: 298 VASNNAEQEEAVD 310
>gi|301631933|ref|XP_002945046.1| PREDICTED: DNA polymerase III subunit beta-like [Xenopus (Silurana)
tropicalis]
Length = 554
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 120/308 (38%), Positives = 192/308 (62%), Gaps = 3/308 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ ++ +L LQ V IVE+++ LPIL+N+L+ K + F ++D E+QI T +G
Sbjct: 188 IVLKATQDKVLAVLQSVSGIVERRHTLPILANMLIRKTGNALQFTTSDQEIQIRTTAELG 247
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
V RK IDIL+++P + V++ + +K GKS+FTLQTL A+++P++
Sbjct: 248 GDVGDFATTVGVRKLIDILKTMPAEQMVSLESSQSKLILKGGKSRFTLQTLAAEDFPLVQ 307
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ + F++ QK LK +LN V F++A QDIRY+LNG+L + K + V++DGHRL +
Sbjct: 308 ESPAFGPVFSVPQKVLKGLLNQVSFAMAVQDIRYFLNGILFVAEGKTLSLVATDGHRLAF 367
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+D + +I+PRKTV LQRLL + + +E++ +NNQ K F +E ++KL++
Sbjct: 368 ASSELDVEVPK-QGVILPRKTVLELQRLLSDADGAIEMQFANNQAKFCFGGMEFVTKLVE 426
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSN 302
GKF DY VI N + S + R LL SLQR +I++++K K VRL I+P L+ V+S+N
Sbjct: 427 GKFPDYHRVIPNNHHNSITLGRAPLLTSLQRTAIMTSEKFKAVRLNIEPGTLR--VASTN 484
Query: 303 REKASSTD 310
E+ + D
Sbjct: 485 AEQEEAVD 492
>gi|395006257|ref|ZP_10390089.1| DNA polymerase III, beta subunit [Acidovorax sp. CF316]
gi|394315782|gb|EJE52556.1| DNA polymerase III, beta subunit [Acidovorax sp. CF316]
Length = 372
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/313 (39%), Positives = 196/313 (62%), Gaps = 9/313 (2%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ ++ +L LQ V IVE+++ LPIL+N+L+ K + ++D E+QI T +G
Sbjct: 2 IVLKATQDKVLAVLQSVAGIVERRHTLPILANVLIRKTGNALQLTTSDLEIQIRTTAELG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
V ARK IDILR++P + V++ + +K GKS+FTLQ+L A+++P++
Sbjct: 62 GDTGDFTTTVGARKLIDILRTMPSDQTVSLESAQSKLILKGGKSRFTLQSLPAEDFPLVQ 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
++ + F + QKTLK +L V F++A QDIRYYLNG+L + K + V++DGHRL +
Sbjct: 122 ESAAFGPVFAVPQKTLKDLLGQVSFAMAVQDIRYYLNGILFVAEGKQLSLVATDGHRLAF 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLL-----ENKENPVELKISNNQIKIIFSNIEII 237
+D + ++I+PRKTV LQRLL EN+ + +E++ +NNQ K F +E +
Sbjct: 182 ASATLDVEVPK-QEVILPRKTVIELQRLLSDAGGENQPH-IEMQFANNQAKFTFGGMEFV 239
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
+KL++GKF DY VI ++ S + R LL SLQR +I+++DK KGVRL ++P L+
Sbjct: 240 TKLVEGKFPDYNRVIPKNHKNSITLGRAPLLASLQRTAIMTSDKFKGVRLNLEPGTLR-- 297
Query: 298 VSSSNREKASSTD 310
V+S+N E+ + D
Sbjct: 298 VASNNAEQEEAVD 310
>gi|351731848|ref|ZP_08949539.1| DNA polymerase III subunit beta [Acidovorax radicis N35]
Length = 372
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/313 (39%), Positives = 196/313 (62%), Gaps = 9/313 (2%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ ++ +L LQ V IVE+++ LPIL+N+L+ K + ++D E+QI T +G
Sbjct: 2 IVLKATQDKVLAVLQSVAGIVERRHTLPILANVLIRKTGNALQLTTSDLEIQIRTTAELG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
V ARK IDILR++P + V++ + +K GKS+FTLQ+L A+++P++
Sbjct: 62 GDTGDFTTTVGARKLIDILRTMPGDQTVSLESAQSKLILKGGKSRFTLQSLPAEDFPLVQ 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
++ + F + QKTLK +L V F++A QDIRYYLNG+L + K + V++DGHRL +
Sbjct: 122 ESAAFGPVFAVPQKTLKDLLGQVSFAMAVQDIRYYLNGILFVAEGKTLSLVATDGHRLAF 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLL-----ENKENPVELKISNNQIKIIFSNIEII 237
+D + ++I+PRKTV LQRLL EN+ + +E++ +NNQ K F +E +
Sbjct: 182 ASATLDVEVPK-QEVILPRKTVIELQRLLSDAGGENQPH-IEMQFANNQAKFTFGGMEFV 239
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
+KL++GKF DY VI ++ S + R LL SLQR +I+++DK KGVRL ++P L+
Sbjct: 240 TKLVEGKFPDYNRVIPKNHKNSITLGRAPLLASLQRTAIMTSDKFKGVRLNLEPGTLR-- 297
Query: 298 VSSSNREKASSTD 310
V+S+N E+ + D
Sbjct: 298 VASNNAEQEEAVD 310
>gi|337277609|ref|YP_004617080.1| DNA polymerase III sliding clamp subunit [Ramlibacter tataouinensis
TTB310]
gi|334728685|gb|AEG91061.1| Candidate DNA polymerase III sliding clamp subunit [Ramlibacter
tataouinensis TTB310]
Length = 368
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 120/308 (38%), Positives = 195/308 (63%), Gaps = 3/308 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ ++ +L LQ V IVE+++ LPIL+N+L+ K ++ ++D E+QI T +
Sbjct: 2 IVLKATQDKVLSVLQSVAGIVERRHTLPILANVLIRKTGGQVQLTTSDLEIQIRTTAEME 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ + V ARK IDILR++P + V++ + +K GKS+FTLQTL A+++P++
Sbjct: 62 GDSGNFTTTVGARKLIDILRTMPADQTVSLESSQSKLVLKGGKSRFTLQTLPAEDFPLVQ 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ +F++ QKTLK +L V F++A DIRYYLNG+L + K + V++DGHRL +
Sbjct: 122 EAPSFGPKFSVPQKTLKELLAQVSFAMAVHDIRYYLNGILFVAEGKQLSLVATDGHRLAF 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+D + ++I+PRKTV LQRLL + E +E++ ++NQ K F +E ++KL++
Sbjct: 182 ASATLDVEVPR-QEVILPRKTVLELQRLLSDVEGQIEMQFASNQAKFAFGGMEFVTKLVE 240
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSN 302
GKF DY VI ++ S + R LL SLQR +I++++K KGVRL I+P L+ V+S+N
Sbjct: 241 GKFPDYNRVIPKNHKNSVTLGRAPLLASLQRTAILTSEKFKGVRLNIEPGTLR--VASNN 298
Query: 303 REKASSTD 310
E+ + D
Sbjct: 299 AEQEEAVD 306
>gi|241765811|ref|ZP_04763751.1| DNA polymerase III, beta subunit [Acidovorax delafieldii 2AN]
gi|241364293|gb|EER59448.1| DNA polymerase III, beta subunit [Acidovorax delafieldii 2AN]
Length = 372
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 122/312 (39%), Positives = 193/312 (61%), Gaps = 7/312 (2%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ ++ +L LQ V IVE+++ LPIL+N+L+ K + ++D E+QI T +G
Sbjct: 2 IVLKATQDKVLAVLQSVSGIVERRHTLPILANVLIRKTGNALQLTTSDLEIQIRTTAELG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
V ARK IDILR++P + V++ + +K GKS+FTLQTL A+++P++
Sbjct: 62 GDTGDFTTTVGARKLIDILRTMPGDQTVSLESAQSKLILKGGKSRFTLQTLPAEDFPLVQ 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
++ + F++ QKTLK +L V F++A QDIRYYLNG+L + K + V++DGHRL +
Sbjct: 122 ESAAFGPVFSVPQKTLKDLLGQVSFAMAVQDIRYYLNGILFVAEGKQLSLVATDGHRLAF 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENP----VELKISNNQIKIIFSNIEIIS 238
+D + ++I+PRKTV LQRLL + +E++ +NNQ K F +E ++
Sbjct: 182 ASATLDVEVPK-QEVILPRKTVLELQRLLSDAGGDNQPHIEMQFANNQAKFTFGGMEFVT 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KL++GKF DY VI + S + R LL SLQR +I+++DK KGVRL ++P L+ V
Sbjct: 241 KLVEGKFPDYNRVIPRNHTNSVTLGRAPLLASLQRTAIMTSDKFKGVRLNLEPGTLR--V 298
Query: 299 SSSNREKASSTD 310
+S+N E+ + D
Sbjct: 299 ASNNAEQEEAVD 310
>gi|407936731|ref|YP_006852372.1| DNA polymerase III subunit beta [Acidovorax sp. KKS102]
gi|407894525|gb|AFU43734.1| DNA polymerase III subunit beta [Acidovorax sp. KKS102]
Length = 372
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/313 (39%), Positives = 196/313 (62%), Gaps = 9/313 (2%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ ++ +L LQ V IVE+++ LPIL+N+L+ K + ++D E+QI T +G
Sbjct: 2 IVLKATQDKVLAVLQSVAGIVERRHTLPILANVLIRKTGNALQLTTSDLEIQIRTTAELG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
V ARK IDILR++P + V++ + +K GKS+FTLQ+L A+++P++
Sbjct: 62 GDTGDFTTTVGARKLIDILRTMPGDQTVSLESAQSKLILKGGKSRFTLQSLPAEDFPLVQ 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
++ + F + QKTLK +L V F++A QDIRYYLNG+L + K + V++DGHRL +
Sbjct: 122 ESAAFGPVFAVPQKTLKDLLGQVSFAMAVQDIRYYLNGILFVAEGKTLSLVATDGHRLAF 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLL-----ENKENPVELKISNNQIKIIFSNIEII 237
+D + ++I+PRKTV LQRLL EN+ + +E++ +NNQ K F +E +
Sbjct: 182 ASATLDVEVPK-QEVILPRKTVIELQRLLSDAGGENQPH-IEMQFANNQAKFTFGGMEFV 239
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
+KL++GKF DY VI ++ S + R LL SLQR +I+++DK KGVRL ++P L+
Sbjct: 240 TKLVEGKFPDYNRVIPKNHKNSVTLGRAPLLASLQRTAIMTSDKFKGVRLNLEPGTLR-- 297
Query: 298 VSSSNREKASSTD 310
V+S+N E+ + D
Sbjct: 298 VASNNAEQEEAVD 310
>gi|394990086|ref|ZP_10382918.1| hypothetical protein SCD_02512 [Sulfuricella denitrificans skB26]
gi|393790351|dbj|GAB72557.1| hypothetical protein SCD_02512 [Sulfuricella denitrificans skB26]
Length = 373
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 129/298 (43%), Positives = 194/298 (65%), Gaps = 4/298 (1%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ T ++AIL PLQ VI IVE+++ LPILSNIL+ KN E +S ++TD E+QIT +
Sbjct: 2 LLIQTNRDAILKPLQSVIGIVERRHTLPILSNILIEKNGENLSVIATDLEIQITATSICQ 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
++ +A+K DI R+ PE K+ + + + IK GKS+F LQTL A ++PI+
Sbjct: 62 DELPDFSVTASAKKLQDICRAFPEDSKIALEKDESRLQIKVGKSRFNLQTLPANDFPILA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ + F +QKTLK +LN+V +++AQQDIRYYLNGLLL + K + V++DGHRL
Sbjct: 122 PSGENRSYFKTTQKTLKNLLNLVQYAMAQQDIRYYLNGLLLVVESKLLRVVATDGHRLGM 181
Query: 183 YQVNI----DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
+ D S ++I+PRKTV L +LL + + V ++I +Q + FSN+ ++S
Sbjct: 182 ACFPLENTEDMAEGSAQEVILPRKTVIELIKLLTDNDEEVTIEIGQSQTRFSFSNVVLVS 241
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
K+++GKF DY VI + Y+ ++R LL+SLQR SI+SN+K +GVRLV+ N L+I
Sbjct: 242 KIVEGKFPDYNRVIPSDYQNHIQIDRILLLQSLQRASILSNEKFRGVRLVLTQNSLRI 299
>gi|296314156|ref|ZP_06864097.1| DNA polymerase III, beta subunit [Neisseria polysaccharea ATCC
43768]
gi|296839191|gb|EFH23129.1| DNA polymerase III, beta subunit [Neisseria polysaccharea ATCC
43768]
Length = 367
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 192/299 (64%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ E++++L PLQ V IVE+++ LPILSN+L+ + L+TD E+QI T G
Sbjct: 2 LILQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G I A+KF DILR+LP V++ ++ + +K+GKS+F LQTL A ++P+M
Sbjct: 62 -GAGDFRITTNAKKFQDILRALPAGALVSLDWDDSRLMLKAGKSRFALQTLPAADFPMMN 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ F+L Q+ K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
ID +++I+PRKTV L +LL N ++P+++++ + Q++ + I+SK+ID
Sbjct: 181 AACAIDADLPR-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K F+++R +LL +L+R+SI++N+K +G RL ++P L + S++
Sbjct: 240 GKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSNN 298
>gi|34495457|ref|NP_899672.1| DNA polymerase III subunit beta [Chromobacterium violaceum ATCC
12472]
gi|34101313|gb|AAQ57682.1| DNA-directed DNA polymerase, beta subunit [Chromobacterium
violaceum ATCC 12472]
Length = 369
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 116/300 (38%), Positives = 198/300 (66%), Gaps = 2/300 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ E++A+L PL V IVE+++ LPILSN+L+ K ++ FL+TD E+QITT ++
Sbjct: 2 LILQAERDALLKPLLAVTGIVERRHTLPILSNVLIEKKGGQVGFLATDLEIQITTASSDE 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTI-YIENKHMFIKSGKSKFTLQTLDAKEYPIM 121
+ +A+K DILR++P VT+ ++ + +K+GKS+F LQTL A+++P++
Sbjct: 62 LPGEDFRLTTSAKKLQDILRAIPGNATVTLEQLDGGRLVLKAGKSRFNLQTLPAEDFPLL 121
Query: 122 TLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLT 181
++ S + FTLSQ+ LK +++ V +++A QDIRYYLNGLL+ + V++DGHRL
Sbjct: 122 SVGSAGESSFTLSQRELKRLISQVQYAMAVQDIRYYLNGLLMQTDGNQVRLVATDGHRLA 181
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
+ ++ +++I+PRKT+ L +LL++ ++ +++++ NQ++ F IISK++
Sbjct: 182 FASADVAATLPK-AEVILPRKTIIELYKLLQDSDDEIKIEVLANQVRFSFGATVIISKVV 240
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DGKF DY VI +K FL+ R + L +LQR +I++N+K +GVRLV+ P + I ++S
Sbjct: 241 DGKFPDYNRVIPLDNDKIFLIERLEFLHALQRAAILANEKFRGVRLVLAPGKMSILCTNS 300
>gi|124265195|ref|YP_001019199.1| DNA polymerase III subunit beta [Methylibium petroleiphilum PM1]
gi|124257970|gb|ABM92964.1| DNA polymerase III, beta subunit [Methylibium petroleiphilum PM1]
Length = 368
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 115/299 (38%), Positives = 188/299 (62%), Gaps = 1/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ + + L LQ V IVE+++ LP+L+N+L+ K I F ++D E+Q+ T
Sbjct: 2 IVLKSPQEKFLGALQAVAGIVERRHTLPVLANVLMRKTGNAIEFTTSDLEIQVRTQAEFD 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ + V ARK IDILR+LP + VT+ + + GKS+FTLQTL A+++P++
Sbjct: 62 GDAGNFSTTVGARKLIDILRTLPADQNVTLSSAQNKLTLTGGKSRFTLQTLPAEDFPLVQ 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ + F++ QK+LK ++ V+F++A DIRYYLNG+L + K++ V++DGHRL
Sbjct: 122 EAADFGPAFSVPQKSLKALIAQVHFAMAVHDIRYYLNGILFVAEGKSLTLVATDGHRLAL 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
Q +D + ++I+PRKTV LQRLL++++ +E++ + NQ K FS +E ++KL++
Sbjct: 182 AQATLDVEMPK-QEVILPRKTVLELQRLLKDEDTAIEMRFAGNQAKFAFSGMEFVTKLVE 240
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF DY VI ++ + R LL SLQR +I++++K KGVRL P L+I S++
Sbjct: 241 GKFPDYNRVIPKNHKNHVTLGRAPLLASLQRAAILTSEKFKGVRLNFDPGTLRIASSNA 299
>gi|240013315|ref|ZP_04720228.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae DGI18]
gi|240015760|ref|ZP_04722300.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae FA6140]
gi|240120387|ref|ZP_04733349.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID24-1]
gi|254492914|ref|ZP_05106085.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae 1291]
gi|268593986|ref|ZP_06128153.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae 35/02]
gi|268596040|ref|ZP_06130207.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae FA19]
gi|268598164|ref|ZP_06132331.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae MS11]
gi|268600508|ref|ZP_06134675.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID18]
gi|268602741|ref|ZP_06136908.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID1]
gi|268681290|ref|ZP_06148152.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID332]
gi|268683461|ref|ZP_06150323.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae SK-92-679]
gi|268685767|ref|ZP_06152629.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae SK-93-1035]
gi|291044692|ref|ZP_06570401.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae DGI2]
gi|293397794|ref|ZP_06642000.1| DNA polymerase III, beta subunit [Neisseria gonorrhoeae F62]
gi|385337034|ref|YP_005890981.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae
TCDC-NG08107]
gi|226511954|gb|EEH61299.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae 1291]
gi|268547375|gb|EEZ42793.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae 35/02]
gi|268549828|gb|EEZ44847.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae FA19]
gi|268582295|gb|EEZ46971.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae MS11]
gi|268584639|gb|EEZ49315.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID18]
gi|268586872|gb|EEZ51548.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID1]
gi|268621574|gb|EEZ53974.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID332]
gi|268623745|gb|EEZ56145.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae SK-92-679]
gi|268626051|gb|EEZ58451.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae SK-93-1035]
gi|291011586|gb|EFE03582.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae DGI2]
gi|291611740|gb|EFF40809.1| DNA polymerase III, beta subunit [Neisseria gonorrhoeae F62]
gi|317165577|gb|ADV09118.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 367
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 192/299 (64%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ E++++L PLQ V IVE+++ LPILSN+L+ + L+TD E+QI T G
Sbjct: 2 LILQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGRGGQTKLLATDLEIQIDTAGPEG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G I A+KF DILR+LP V++ ++ + +K+GKS+F LQTL A ++P+M
Sbjct: 62 -GAGDFRITTNAKKFQDILRALPAGALVSLDWDDNRLTLKAGKSRFALQTLPAADFPMMN 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ F+L Q+ K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 VGEDISATFSLGQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
ID +++I+PRKTV L +LL N ++P+++++ + Q++ + I+SK+ID
Sbjct: 181 AACAIDADLPR-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K F+++R +LL +L+R+SI++N+K +G RL ++P L + S++
Sbjct: 240 GKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSNN 298
>gi|388566801|ref|ZP_10153243.1| DNA polymerase III subunit beta [Hydrogenophaga sp. PBC]
gi|388265979|gb|EIK91527.1| DNA polymerase III subunit beta [Hydrogenophaga sp. PBC]
Length = 368
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 115/304 (37%), Positives = 195/304 (64%), Gaps = 1/304 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V + ++ +L LQ V IVE+++ LPIL+N+L+ K ++ ++D E+QI T +
Sbjct: 2 IVFKSSQDKVLAALQSVAGIVERRHTLPILANVLLRKTGSQLQLTTSDLEIQIRTTAELD 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ S + ARK IDILR++P + V++ + +K GKS+FTLQ+L A+++P++
Sbjct: 62 GDSGSFATTLGARKLIDILRTMPGDQTVSLEHTGGKLILKGGKSRFTLQSLPAEDFPLVQ 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
++ + F++ QKTLK +L+ V F++A DIRYYLNG+L + K + V++DGHRL +
Sbjct: 122 ESASFGPVFSVPQKTLKGLLSQVSFAMAVHDIRYYLNGILFVAEGKQLSLVATDGHRLAF 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+D + ++I+PRKTV LQRLL +K+ +E++ + NQ K F +E ++KL++
Sbjct: 182 ASATLDVEVPK-QEVILPRKTVLELQRLLSDKDGAIEMQFAANQAKFSFDGMEFVTKLVE 240
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSN 302
GKF DY VI ++ + R LL SLQR +I++++K KGVRL ++P L++ S++
Sbjct: 241 GKFPDYNRVIPKNHKNIVTLGRAPLLSSLQRTAIMTSEKFKGVRLNVEPGTLRVASSNAE 300
Query: 303 REKA 306
+E+A
Sbjct: 301 QEEA 304
>gi|238021643|ref|ZP_04602069.1| hypothetical protein GCWU000324_01545 [Kingella oralis ATCC 51147]
gi|237866257|gb|EEP67299.1| hypothetical protein GCWU000324_01545 [Kingella oralis ATCC 51147]
Length = 367
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 122/295 (41%), Positives = 189/295 (64%), Gaps = 2/295 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ TE++A+L PLQ IVE+K+ LPIL+N+L+ K+ L+TD E+QI T A
Sbjct: 2 LILQTERDALLKPLQTATGIVERKHTLPILANVLLESKGGKVHILATDLEIQIHTQGA-D 60
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ A+K DILR+LPE V + ++ + +K+GKS+F LQTL ++P M
Sbjct: 61 SEQGDFQLTTNAKKLQDILRALPENATVQLDLDEHKLTLKAGKSRFNLQTLPPADFPTMN 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
++ +F+L Q+TLK ++N V +S+A QDIRYYLNGLLL + + V++DGHRL Y
Sbjct: 121 ISETTHTQFSLPQETLKHMINQVQYSMAVQDIRYYLNGLLLQVEGNQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
I+ + + D+I+PRKTV L +LL + +++++ +NQ++ + I+SK+ID
Sbjct: 181 ASTTIEAELAK-QDVILPRKTVLELVKLLNQPKEAIQIELLDNQVRFQCGDTTIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
GKF DY VI +K F++NR LL +L+R +I++N+K +GVRL + P LKIT
Sbjct: 240 GKFPDYNRVIPLDNDKIFVINRATLLGALERSAILANEKFRGVRLQLAPGSLKIT 294
>gi|350572068|ref|ZP_08940377.1| DNA-directed DNA polymerase III beta subunit [Neisseria wadsworthii
9715]
gi|349790656|gb|EGZ44559.1| DNA-directed DNA polymerase III beta subunit [Neisseria wadsworthii
9715]
Length = 367
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 124/299 (41%), Positives = 191/299 (63%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ E++A+L PLQ V IVE+++ LPILSN+L+ + + L+TD E+QI T T
Sbjct: 2 LILQAERDALLKPLQAVTGIVERRHTLPILSNVLLENVHGQTNILATDLEIQINT-TGPQ 60
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
I A+K DILR+LPE V + + +K+GKS+F LQTL A+++P+M+
Sbjct: 61 SDAGEFRITTNAKKLQDILRALPEGSLVALDWAQNRLTLKAGKSRFNLQTLPAEDFPLMS 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ + F+L Q+ LK +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 VGEDVNTAFSLPQEALKNMLSQVQYSMAVQDIRYYLNGLLMQTEGDQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
ID S +++I+PRKTV L +LL N PV +++ NNQ++ ++ I+SK++D
Sbjct: 181 SSTTIDADLPS-AEVILPRKTVLELFKLLNNPSEPVSIELLNNQVRFRCNDTVIVSKVVD 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K FLV R +LL +L+R SI++N+K +G RL +KP L + S++
Sbjct: 240 GKFPDFNRVIPLDNDKIFLVGRTQLLGALERASILANEKFRGARLHLKPGLLSVVCSNN 298
>gi|416164663|ref|ZP_11607252.1| DNA polymerase III, beta subunit [Neisseria meningitidis N1568]
gi|421555618|ref|ZP_16001545.1| DNA polymerase III, beta subunit [Neisseria meningitidis 98008]
gi|433474220|ref|ZP_20431574.1| DNA polymerase III, beta subunit [Neisseria meningitidis 97021]
gi|433482645|ref|ZP_20439900.1| DNA polymerase III, beta subunit [Neisseria meningitidis 2006087]
gi|433484650|ref|ZP_20441869.1| DNA polymerase III, beta subunit [Neisseria meningitidis 2002038]
gi|433486894|ref|ZP_20444083.1| DNA polymerase III, beta subunit [Neisseria meningitidis 97014]
gi|325127477|gb|EGC50406.1| DNA polymerase III, beta subunit [Neisseria meningitidis N1568]
gi|402329078|gb|EJU64440.1| DNA polymerase III, beta subunit [Neisseria meningitidis 98008]
gi|432207538|gb|ELK63527.1| DNA polymerase III, beta subunit [Neisseria meningitidis 97021]
gi|432214665|gb|ELK70562.1| DNA polymerase III, beta subunit [Neisseria meningitidis 2006087]
gi|432219736|gb|ELK75572.1| DNA polymerase III, beta subunit [Neisseria meningitidis 2002038]
gi|432220493|gb|ELK76313.1| DNA polymerase III, beta subunit [Neisseria meningitidis 97014]
Length = 367
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 192/299 (64%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ E++++L PLQ V IVE+++ LPILSN+L+ + L+TD E+QI T G
Sbjct: 2 LILQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G I A+KF DILR+LP V++ ++ + +K+GKS+F LQTL A ++P+M
Sbjct: 62 -GAGDFRITTNAKKFQDILRALPAGALVSLDWDDSRLTLKAGKSRFALQTLPAADFPMMN 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ F+L Q+ K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
ID +++I+PRKTV L +LL N ++P+++++ + Q++ + I+SK+ID
Sbjct: 181 AACAIDADLPR-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K F+++R +LL +L+R+SI++N+K +G RL ++P L + S++
Sbjct: 240 GKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSNN 298
>gi|254804281|ref|YP_003082502.1| DNA polymerase III subunit beta [Neisseria meningitidis alpha14]
gi|385855912|ref|YP_005902425.1| DNA polymerase III subunit beta [Neisseria meningitidis M01-240355]
gi|421545214|ref|ZP_15991278.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM140]
gi|421547262|ref|ZP_15993300.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM183]
gi|421548234|ref|ZP_15994262.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM2781]
gi|421553467|ref|ZP_15999429.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM576]
gi|421561921|ref|ZP_16007758.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM2657]
gi|254667823|emb|CBA03814.1| DNA polymerase III, beta chain [Neisseria meningitidis alpha14]
gi|254670915|emb|CBA07499.1| DNA polymerase III, beta subunit [Neisseria meningitidis alpha153]
gi|325204853|gb|ADZ00307.1| DNA polymerase III, beta subunit [Neisseria meningitidis
M01-240355]
gi|402321291|gb|EJU56766.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM140]
gi|402321625|gb|EJU57098.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM183]
gi|402326956|gb|EJU62354.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM2781]
gi|402328144|gb|EJU63524.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM576]
gi|402336306|gb|EJU71567.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM2657]
Length = 367
Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 192/299 (64%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ E++++L PLQ V IVE+++ LPILSN+L+ + L+TD E+QI T G
Sbjct: 2 LILQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G I A+KF DILR+LP V++ ++ + +K+GKS+F LQTL A ++P+M
Sbjct: 62 -GAGDFRITTNAKKFQDILRALPAGALVSLDWDDSRLTLKAGKSRFALQTLPAADFPMMN 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ F+L Q+ K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
ID +++I+PRKTV L +LL N ++P+++++ + Q++ + I+SK+ID
Sbjct: 181 AACAIDADLPH-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K F+++R +LL +L+R+SI++N+K +G RL ++P L + S++
Sbjct: 240 GKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSNN 298
>gi|91785915|ref|YP_546867.1| DNA polymerase III subunit beta [Polaromonas sp. JS666]
gi|91695140|gb|ABE41969.1| DNA polymerase III, beta subunit [Polaromonas sp. JS666]
Length = 368
Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 120/308 (38%), Positives = 193/308 (62%), Gaps = 3/308 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ ++ +L LQ V IVE+++ LPIL+N+L+ K ++ ++D E+QI T +
Sbjct: 2 IVLKATQDKVLSVLQSVAGIVERRHTLPILANVLIRKTGAQLQLTTSDLEIQIRTSADLD 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ V ARK IDILRS+P + V++ + +K GKS+FTLQTL A+++P++
Sbjct: 62 GDAGNFTTTVGARKLIDILRSMPSDQTVSLESAQSKLILKGGKSRFTLQTLPAEDFPLVQ 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ + F++ QK LK +LN V F++A DIRYYLNG+L + K + V++DGHRL +
Sbjct: 122 EAANFGPSFSVPQKVLKELLNQVSFAMAVHDIRYYLNGILFVAEGKQLSLVATDGHRLAF 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+D + ++I+PRKTV +QRLL +KE +E++ + NQ K F +E ++KL++
Sbjct: 182 SSATLDVEVPK-QEVILPRKTVLEMQRLLSDKEGAIEMQFAGNQAKFSFEGMEFVTKLVE 240
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSN 302
GKF DY VI ++ + R LL SLQR +I++++K KGVRL I+P L+ V+S+N
Sbjct: 241 GKFPDYNRVIPKNHKNIITLGRVPLLASLQRTAILTSEKFKGVRLNIEPGTLR--VASNN 298
Query: 303 REKASSTD 310
E+ + D
Sbjct: 299 AEQEEAVD 306
>gi|161869313|ref|YP_001598480.1| DNA polymerase III subunit beta [Neisseria meningitidis 053442]
gi|421543149|ref|ZP_15989246.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM255]
gi|421563988|ref|ZP_16009799.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM2795]
gi|421906218|ref|ZP_16336120.1| DNA polymerase III, beta chain [Neisseria meningitidis alpha704]
gi|161594866|gb|ABX72526.1| DNA polymerase III, beta subunit [Neisseria meningitidis 053442]
gi|393292624|emb|CCI72037.1| DNA polymerase III, beta chain [Neisseria meningitidis alpha704]
gi|402315355|gb|EJU50919.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM255]
gi|402339207|gb|EJU74424.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM2795]
Length = 367
Score = 243 bits (620), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 192/299 (64%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ E++++L PLQ V IVE+++ LPILSN+L+ + L+TD E+QI T G
Sbjct: 2 LILQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G I A+KF DILR+LP V++ ++ + +K+GKS+F LQTL A ++P+M
Sbjct: 62 -GADDFRITTNAKKFQDILRALPAGALVSLDWDDSRLTLKAGKSRFALQTLPAADFPMMN 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ F+L Q+ K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
ID +++I+PRKTV L +LL N ++P+++++ + Q++ + I+SK+ID
Sbjct: 181 AACAIDADLPR-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K F+++R +LL +L+R+SI++N+K +G RL ++P L + S++
Sbjct: 240 GKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSNN 298
>gi|398802256|ref|ZP_10561472.1| DNA polymerase III, beta subunit [Polaromonas sp. CF318]
gi|398100725|gb|EJL90958.1| DNA polymerase III, beta subunit [Polaromonas sp. CF318]
Length = 368
Score = 243 bits (620), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 120/308 (38%), Positives = 193/308 (62%), Gaps = 3/308 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ ++ +L LQ V IVE+++ LPIL+N+L+ K ++ ++D E+QI T +
Sbjct: 2 IVLKATQDKVLSVLQSVAGIVERRHTLPILANVLIRKTGAQVQLTTSDLEIQIRTTAELD 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ V ARK IDILRS+P + V++ + +K GKS+FTLQTL A+++P++
Sbjct: 62 GDTGNFTTTVGARKLIDILRSMPSDQTVSLESSQNKLILKGGKSRFTLQTLPAEDFPLVQ 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ + F++ QK LK +LN V F++A DIRYYLNG+L + K + V++DGHRL +
Sbjct: 122 EAANFGPGFSVPQKVLKELLNQVSFAMAVHDIRYYLNGILFVAEGKQLSLVATDGHRLAF 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+D + ++I+PRKTV +QRLL +KE +E++ + NQ K F +E ++KL++
Sbjct: 182 SSAMLDVEVPK-QEVILPRKTVLEMQRLLSDKEGAIEMQFAGNQAKFSFEGMEFVTKLVE 240
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSN 302
GKF DY VI ++ + R LL SLQR +I++++K KGVRL I+P L+ V+S+N
Sbjct: 241 GKFPDYNRVIPKNHKNIITLGRLPLLASLQRTAILTSEKFKGVRLNIEPGTLR--VASNN 298
Query: 303 REKASSTD 310
E+ + D
Sbjct: 299 AEQEEAVD 306
>gi|385324846|ref|YP_005879285.1| DNA polymerase III subunit beta [Neisseria meningitidis 8013]
gi|261393233|emb|CAX50856.1| DNA polymerase III beta subunit [Neisseria meningitidis 8013]
Length = 367
Score = 243 bits (620), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 192/299 (64%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ E++++L PLQ V IVE+++ LPILSN+L+ + L+TD E+QI T G
Sbjct: 2 LILQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G I A+KF DILR+LP V++ ++ + +K+GKS+F LQTL A ++P+M
Sbjct: 62 -GADDFRITTNAKKFQDILRALPAGALVSLDWDDSRLTLKAGKSRFALQTLPAADFPMMN 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ F+L Q+ K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
ID +++I+PRKTV L +LL N ++P+++++ + Q++ + I+SK+ID
Sbjct: 181 AACAIDADLPH-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K F+++R +LL +L+R+SI++N+K +G RL ++P L + S++
Sbjct: 240 GKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSNN 298
>gi|120608716|ref|YP_968394.1| DNA polymerase III subunit beta [Acidovorax citrulli AAC00-1]
gi|120587180|gb|ABM30620.1| DNA polymerase III, beta subunit [Acidovorax citrulli AAC00-1]
Length = 372
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 196/313 (62%), Gaps = 9/313 (2%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ ++ +L LQ V IVE+++ LPIL+N+L+ K + ++D E+QI T +G
Sbjct: 2 IVLKATQDKVLAVLQSVAGIVERRHTLPILANVLIRKTGNALQLTTSDLEIQIRTTAELG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
V ARK IDIL+++P + V++ + + +K GKS+FTLQ+L A+++P++
Sbjct: 62 GDTGDFTTTVGARKLIDILKTMPADQTVSLESQQSKLVLKGGKSRFTLQSLPAEDFPLVQ 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
++ + F++ QK LK +L V F++A QDIRYYLNG+L + + V++DGHRL +
Sbjct: 122 ESAAFGPAFSVPQKVLKDLLGQVSFAMAVQDIRYYLNGILFVAEGNTLSLVATDGHRLAF 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLL-----ENKENPVELKISNNQIKIIFSNIEII 237
+D + ++I+PRKTV LQRLL EN+ + +E++ +NNQ K F +E +
Sbjct: 182 ASATLDVEVPK-QEVILPRKTVLELQRLLSDAGGENQPH-IEMQFANNQAKFTFGGMEFV 239
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
+KL++GKF DY VI ++ S + R LL SLQR +I+++DK KGVRL I+P L+
Sbjct: 240 TKLVEGKFPDYNRVIPKNHKNSVTLGRAPLLASLQRTAIMTSDKFKGVRLNIEPGTLR-- 297
Query: 298 VSSSNREKASSTD 310
V+S+N E+ + D
Sbjct: 298 VASNNAEQEEAVD 310
>gi|15677733|ref|NP_274896.1| DNA polymerase III subunit beta [Neisseria meningitidis MC58]
gi|385851986|ref|YP_005898501.1| DNA polymerase III subunit beta [Neisseria meningitidis M04-240196]
gi|385853950|ref|YP_005900464.1| DNA polymerase III subunit beta [Neisseria meningitidis H44/76]
gi|416184841|ref|ZP_11613158.1| DNA polymerase III, beta subunit [Neisseria meningitidis M13399]
gi|416214653|ref|ZP_11623017.1| DNA polymerase III, beta subunit [Neisseria meningitidis
M01-240013]
gi|418289053|ref|ZP_12901447.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM233]
gi|427826544|ref|ZP_18993594.1| DNA polymerase III, beta subunit [Neisseria meningitidis H44/76]
gi|433465876|ref|ZP_20423346.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM422]
gi|433489070|ref|ZP_20446219.1| DNA polymerase III, beta subunit [Neisseria meningitidis M13255]
gi|433491249|ref|ZP_20448361.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM418]
gi|433505696|ref|ZP_20462627.1| DNA polymerase III, beta subunit [Neisseria meningitidis 9506]
gi|433507886|ref|ZP_20464782.1| DNA polymerase III, beta subunit [Neisseria meningitidis 9757]
gi|433510044|ref|ZP_20466900.1| DNA polymerase III, beta subunit [Neisseria meningitidis 12888]
gi|433512113|ref|ZP_20468927.1| DNA polymerase III, beta subunit [Neisseria meningitidis 4119]
gi|7227158|gb|AAF42232.1| DNA polymerase III, beta subunit [Neisseria meningitidis MC58]
gi|316985518|gb|EFV64465.1| DNA polymerase III, beta subunit [Neisseria meningitidis H44/76]
gi|325133541|gb|EGC56204.1| DNA polymerase III, beta subunit [Neisseria meningitidis M13399]
gi|325143791|gb|EGC66108.1| DNA polymerase III, beta subunit [Neisseria meningitidis
M01-240013]
gi|325200954|gb|ADY96409.1| DNA polymerase III, beta subunit [Neisseria meningitidis H44/76]
gi|325206809|gb|ADZ02262.1| DNA polymerase III, beta subunit [Neisseria meningitidis
M04-240196]
gi|372200407|gb|EHP14487.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM233]
gi|432200573|gb|ELK56663.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM422]
gi|432221066|gb|ELK76881.1| DNA polymerase III, beta subunit [Neisseria meningitidis M13255]
gi|432225383|gb|ELK81126.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM418]
gi|432239096|gb|ELK94655.1| DNA polymerase III, beta subunit [Neisseria meningitidis 9757]
gi|432239181|gb|ELK94739.1| DNA polymerase III, beta subunit [Neisseria meningitidis 9506]
gi|432244779|gb|ELL00261.1| DNA polymerase III, beta subunit [Neisseria meningitidis 12888]
gi|432245270|gb|ELL00741.1| DNA polymerase III, beta subunit [Neisseria meningitidis 4119]
Length = 367
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 191/299 (63%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ E++++L PLQ V IVE+++ LPILSN+L+ + L+TD E+QI T G
Sbjct: 2 LILQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G I A+KF DILR+LP V++ ++ + +K+GKS+F LQTL A ++P+M
Sbjct: 62 -GAGDFRITTNAKKFQDILRALPAGALVSLDWDDSRLTLKAGKSRFALQTLPAADFPMMN 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ F+L Q+ K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
ID +++I+PRKTV L +LL N ++P+++++ + Q++ + I+SK+ID
Sbjct: 181 AACAIDADLPR-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K F+++R +LL +L+R SI++N+K +G RL ++P L + S++
Sbjct: 240 GKFPDFNRVIPLDNDKIFVLSRAELLGALERASILANEKFRGARLFLQPGLLSVVCSNN 298
>gi|416198834|ref|ZP_11619201.1| DNA polymerase III, beta subunit [Neisseria meningitidis CU385]
gi|325139556|gb|EGC62096.1| DNA polymerase III, beta subunit [Neisseria meningitidis CU385]
Length = 367
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 192/299 (64%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ E++++L PLQ V IVE+++ LPILSN+L+ + L+TD E+QI T T
Sbjct: 2 LILQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDT-TGPE 60
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G I A+KF DILR+LP V++ ++ + +K+GKS+F LQTL A ++P+M
Sbjct: 61 SGAGDFRITTNAKKFQDILRALPAGALVSLDWDDSRLTLKAGKSRFALQTLPAADFPMMN 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ F+L Q+ K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
ID +++I+PRKTV L +LL N ++P+++++ + Q++ + I+SK+ID
Sbjct: 181 AACAIDADLPR-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K F+++R +LL +L+R+SI++N+K +G RL ++P L + S++
Sbjct: 240 GKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSNN 298
>gi|121607000|ref|YP_984329.1| DNA polymerase III subunit beta [Polaromonas naphthalenivorans CJ2]
gi|120595969|gb|ABM39408.1| DNA polymerase III, beta subunit [Polaromonas naphthalenivorans
CJ2]
Length = 368
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 119/308 (38%), Positives = 191/308 (62%), Gaps = 3/308 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ ++ L LQ V IVE+++ LPIL+N+L+ K ++ ++D E+QI T +
Sbjct: 2 IVLKATQDKFLGVLQSVAGIVERRHTLPILANVLIRKTGAQLQLTTSDLEIQIRTTAELD 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
V ARK ID+LRS+P + V++ + +K GKS+FTLQTL A+++P++
Sbjct: 62 GDEGDFTTTVGARKLIDVLRSMPSDQTVSLESAQNKLILKGGKSRFTLQTLPAEDFPLVQ 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ + F++ QK LK +LN V F++A DIRYYLNG+L + K + V++DGHRL +
Sbjct: 122 EAASFGPVFSVPQKVLKELLNQVSFAMAVHDIRYYLNGILFVAEGKQLSLVATDGHRLAF 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+D + ++I+PRKTV +QRLL +KE +E++ + NQ K F +E ++KL++
Sbjct: 182 SSATLDVEVPK-QEVILPRKTVLEMQRLLSDKEGAIEMQFAGNQAKFSFEGMEFVTKLVE 240
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSN 302
GKF DY VI ++ + R LL SLQR +I++++K KGVRL I+P L+ V+S+N
Sbjct: 241 GKFPDYNRVIPKNHKNIITLGRAPLLASLQRTAILTSEKFKGVRLNIEPGTLR--VASNN 298
Query: 303 REKASSTD 310
E+ + D
Sbjct: 299 AEQEEAVD 306
>gi|225025477|ref|ZP_03714669.1| hypothetical protein EIKCOROL_02377 [Eikenella corrodens ATCC
23834]
gi|224941761|gb|EEG22970.1| hypothetical protein EIKCOROL_02377 [Eikenella corrodens ATCC
23834]
Length = 367
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 119/299 (39%), Positives = 190/299 (63%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ E++ +L PLQ V IVE+K+ LPILSN+L+ + + + L+TD E+QI T+
Sbjct: 2 LILEAERDTLLKPLQAVTGIVERKHTLPILSNVLIERTGGQTNILATDLEIQIHTH-GPH 60
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
I A+K DILR+LPE V + + +K+GKS+F LQTL A+++P+M+
Sbjct: 61 TDAEDFRITTNAKKLQDILRALPEGAIVALDWAQNRLTLKTGKSRFALQTLPAEDFPLMS 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ + FTL Q+T + +L+ V +++A QDIRYYLNGLL+ + N+ V++DGHRL Y
Sbjct: 121 IGEEVVSAFTLPQETFRNMLSQVQYAMAVQDIRYYLNGLLMQVEGSNLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
ID +++I+PRKTV L +LL E PV +++ NNQ++ ++ ++SK++D
Sbjct: 181 SAAVIDADLPK-AEVILPRKTVLELFKLLNRPEEPVTVELLNNQVRFRCNDTVVVSKVVD 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K FL+ R L +L+R +I++N+K +GVRL ++P L + S+S
Sbjct: 240 GKFPDFNRVIPQDNDKIFLLGRQPFLGALERAAILANEKFRGVRLQLRPGLLSVLCSNS 298
>gi|326314825|ref|YP_004232497.1| DNA polymerase III subunit beta [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323371661|gb|ADX43930.1| DNA polymerase III, beta subunit [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 372
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 196/313 (62%), Gaps = 9/313 (2%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ ++ +L LQ V IVE+++ LPIL+N+L+ K + ++D E+QI T +G
Sbjct: 2 IVLKATQDKVLAVLQSVAGIVERRHTLPILANVLIRKTGNALQLTTSDLEIQIRTTAELG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
V ARK IDIL+++P + V++ + + +K GKS+FTLQ+L A+++P++
Sbjct: 62 GDTGDFTTTVGARKLIDILKTMPADQTVSLESQQSKLVLKGGKSRFTLQSLPAEDFPLVQ 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
++ + F++ QK LK +L V F++A QDIRYYLNG+L + + V++DGHRL +
Sbjct: 122 ESAAFGPVFSVPQKVLKDLLGQVSFAMAVQDIRYYLNGILFVAEGNTLSLVATDGHRLAF 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLL-----ENKENPVELKISNNQIKIIFSNIEII 237
+D + ++I+PRKTV LQRLL EN+ + +E++ +NNQ K F +E +
Sbjct: 182 ASATLDVEVPK-QEVILPRKTVLELQRLLSDAGGENQPH-IEMQFANNQAKFTFGGMEFV 239
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
+KL++GKF DY VI ++ S + R LL SLQR +I+++DK KGVRL I+P L+
Sbjct: 240 TKLVEGKFPDYNRVIPKNHKNSVTLGRAPLLASLQRTAIMTSDKFKGVRLNIEPGTLR-- 297
Query: 298 VSSSNREKASSTD 310
V+S+N E+ + D
Sbjct: 298 VASNNAEQEEAVD 310
>gi|407001187|gb|EKE18255.1| hypothetical protein ACD_10C00067G0001 [uncultured bacterium]
Length = 368
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 124/294 (42%), Positives = 197/294 (67%), Gaps = 1/294 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+++ T ++ +L PLQ V IVE+++ LPILSN+L+ K+ ++++ L+TD E+QITT T
Sbjct: 2 VLIKTHRDTLLAPLQSVSGIVERRHTLPILSNVLLEKHGDRLTLLATDIEIQITTTTTGA 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G + V ARK +ILRSLP+ +V++ +E+K + ++SGKS+F+LQTL A ++P MT
Sbjct: 62 GGEGDGAVTVGARKLQEILRSLPDANEVSLVLEDKRLQVRSGKSRFSLQTLPADDFPRMT 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ FT++QK + +L FS+A QD+RYYLNGLLL + K + AV++DGHRL Y
Sbjct: 122 ITEGETRGFTITQKAFRQLLGKTQFSMAAQDVRYYLNGLLLLVEGKELRAVATDGHRLAY 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
V I+ +II+PRKTV L RLL + + P+E+ ++ NQ++ F ++ ++SKLID
Sbjct: 182 ASVEIEADLPR-QEIILPRKTVLELNRLLVDNDEPLEITLTANQVRFAFGSVVLVSKLID 240
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
GKF DY+ V+ V R L++++ R +I++N+K +GVR+V+ N LK+
Sbjct: 241 GKFPDYERVVPATLRNHIKVGRQPLMQAMNRAAILTNEKFRGVRVVLGENSLKL 294
>gi|303256369|ref|ZP_07342383.1| DNA polymerase III, beta subunit [Burkholderiales bacterium 1_1_47]
gi|331001505|ref|ZP_08325123.1| DNA polymerase III, beta subunit [Parasutterella excrementihominis
YIT 11859]
gi|302859860|gb|EFL82937.1| DNA polymerase III, beta subunit [Burkholderiales bacterium 1_1_47]
gi|329568234|gb|EGG50051.1| DNA polymerase III, beta subunit [Parasutterella excrementihominis
YIT 11859]
Length = 391
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 120/304 (39%), Positives = 194/304 (63%), Gaps = 5/304 (1%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
+N++K I P+Q V +V++K LP+LSNIL + ++++ ++ D ++QI T +G
Sbjct: 27 INSKKENIFKPIQAVSGVVQRKQPLPVLSNILFVQKGKQVTLVANDLDLQILTVAEIGEE 86
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLN 124
NS ++ ++ARK DIL +LP+T ++ + H+ + SGKSKF LQT+ A+E+P++T
Sbjct: 87 NSEMSTTISARKLTDILATLPDTNPLSFSKKGDHVVLSSGKSKFELQTISAEEFPVIT-- 144
Query: 125 SKYDFE--FTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ D E FT+S K +LNMV F+ A ++RY+LNG+ + + + V++DGHRL
Sbjct: 145 -EVDLEHAFTMSCLRFKYLLNMVSFACAVNNVRYFLNGVYICAENNKVRGVATDGHRLAL 203
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
V +K D I+PRKTV L RL+ + ++P+E+ IS QIK F IEI+SKL++
Sbjct: 204 CDVEAEKTADKKLDAILPRKTVKELVRLIPDSQDPIEVYISERQIKFKFVGIEILSKLVE 263
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSN 302
G++ DY+ VI EK F V R +LL SLQR++ ++ DKL GVR + P +L + ++++
Sbjct: 264 GRYPDYQRVIPEHNEKEFRVGRQELLSSLQRVATLTADKLMGVRWNLTPGHLNVAANNAD 323
Query: 303 REKA 306
E+A
Sbjct: 324 MEEA 327
>gi|261363924|ref|ZP_05976807.1| DNA polymerase III, beta subunit [Neisseria mucosa ATCC 25996]
gi|288567936|gb|EFC89496.1| DNA polymerase III, beta subunit [Neisseria mucosa ATCC 25996]
Length = 367
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 117/297 (39%), Positives = 191/297 (64%), Gaps = 2/297 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ +++++L PLQ V IVE+++ LPILSN+L+ + L+TD E+QI T
Sbjct: 2 LILQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPES 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
I A+KF DILR+LP++ V++ + + +++GKS+F LQTL A+++P+M+
Sbjct: 62 QA-GDFRITTNAKKFQDILRALPDSAIVSLDWADNRLTLRAGKSRFALQTLPAEDFPLMS 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ F+LSQ+T K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 VGEDISAAFSLSQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
I+ + +++I+PRKTV L +LL N P+ +++ NNQ++ + I+SK+ID
Sbjct: 181 AASQIEAELPK-TEVILPRKTVLELFKLLNNPSEPISVELLNNQVRFQCNGTTIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
GKF D+ VI +K FLV+R +LL +L+R +I++N+K +G RL ++P L + S
Sbjct: 240 GKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCS 296
>gi|89898824|ref|YP_521295.1| DNA polymerase III subunit beta [Rhodoferax ferrireducens T118]
gi|89343561|gb|ABD67764.1| DNA polymerase III, beta subunit [Rhodoferax ferrireducens T118]
Length = 367
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 117/304 (38%), Positives = 195/304 (64%), Gaps = 2/304 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ ++ +L LQ V IVE+++ LPIL+N+L+ K + ++D E+QI T TA
Sbjct: 2 IVLKATQDKVLSVLQSVAGIVERRHTLPILANVLIRKTGTSLQLTTSDLEIQIRT-TAEL 60
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G++ V ARK IDILR++P + V++ + +K GKS+FTLQT+ A+++P++
Sbjct: 61 DGDTGDFTTVGARKLIDILRTMPADQTVSLESSAAKLILKGGKSRFTLQTMAAEDFPLVQ 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ + F++ QKTLK +L+ V F++A DIRYYLNG+L + + V++DGHRL +
Sbjct: 121 EAASFGPVFSVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFVAEGSQLSLVATDGHRLAF 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+D + ++I+PRKTV LQRLL + + +E++ +NNQ K F +E ++KL++
Sbjct: 181 ASATLDVEVPK-QEVILPRKTVIELQRLLSDTQGAIEMQFANNQAKFSFDGMEFVTKLVE 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSN 302
GKF DY VI ++ S + R+ LL +LQR +I++++K KGVRL I P L++ +++
Sbjct: 240 GKFPDYNRVIPKNHQNSITLGRSALLATLQRTAILTSEKFKGVRLNIDPGTLRVASNNAE 299
Query: 303 REKA 306
+E+A
Sbjct: 300 QEEA 303
>gi|421568392|ref|ZP_16014117.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM3001]
gi|402341562|gb|EJU76736.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM3001]
Length = 367
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 191/299 (63%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ E++++L PLQ V IVE+++ LPILSN+L+ + L+TD E+QI T G
Sbjct: 2 LILQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G I A+KF DILR+LP V++ ++ + +K+GKS+F LQTL A ++P+M
Sbjct: 62 -GAGDFRITTNAKKFQDILRALPAGALVSLDWDDSRLTLKAGKSRFALQTLPAADFPMMN 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ F+L Q+ K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
ID +++I+PRKTV L +LL N ++P+++++ + Q++ + I+SK+ID
Sbjct: 181 AACAIDADLPR-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF + VI +K F+++R +LL +L+R+SI++N+K +G RL ++P L + S++
Sbjct: 240 GKFPHFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSNN 298
>gi|421538866|ref|ZP_15985038.1| DNA polymerase III, beta subunit [Neisseria meningitidis 93003]
gi|402315573|gb|EJU51136.1| DNA polymerase III, beta subunit [Neisseria meningitidis 93003]
Length = 367
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 192/299 (64%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ E++++L PLQ V IVE+++ LPILSN+L+ + L+TD E+QI T G
Sbjct: 2 LILQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G + I A+KF DILR+LP V++ ++ + +K+GKS+F LQTL A ++P+M
Sbjct: 62 -GAGAFRITTNAKKFQDILRALPAGALVSLDWDDSRLTLKAGKSRFALQTLPAADFPMMN 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ F+L Q+ K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
ID +++I+PRKTV L +LL N ++P+++++ + Q++ + I+SK+ID
Sbjct: 181 AACAIDADLPR-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K F+++R +LL +L+R+SI++N+K +G RL ++ L + S++
Sbjct: 240 GKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQSGLLSVVCSNN 298
>gi|255066617|ref|ZP_05318472.1| DNA polymerase III, beta subunit [Neisseria sicca ATCC 29256]
gi|340361779|ref|ZP_08684193.1| DNA-directed DNA polymerase III beta subunit [Neisseria macacae
ATCC 33926]
gi|349610293|ref|ZP_08889648.1| DNA polymerase III, beta subunit [Neisseria sp. GT4A_CT1]
gi|419795705|ref|ZP_14321289.1| DNA polymerase III, beta subunit [Neisseria sicca VK64]
gi|255049201|gb|EET44665.1| DNA polymerase III, beta subunit [Neisseria sicca ATCC 29256]
gi|339888199|gb|EGQ77675.1| DNA-directed DNA polymerase III beta subunit [Neisseria macacae
ATCC 33926]
gi|348610176|gb|EGY59874.1| DNA polymerase III, beta subunit [Neisseria sp. GT4A_CT1]
gi|385700226|gb|EIG30479.1| DNA polymerase III, beta subunit [Neisseria sicca VK64]
Length = 367
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 193/299 (64%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ +++++L PLQ V IVE+++ LPILSN+L+ + L+TD E+QI T
Sbjct: 2 LILQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPES 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
I A+KF DILR+LP++ V++ + + +++GKS+F LQTL A+++P+M+
Sbjct: 62 QA-GDFRITTNAKKFQDILRALPDSAIVSLDWADNRLTLRAGKSRFALQTLPAEDFPLMS 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ F+LSQ+T K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 VGEDISAAFSLSQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
I+ + +++I+PRKTV L +LL N P+ +++ NNQ++ + I+SK+ID
Sbjct: 181 AASQIEAELPK-TEVILPRKTVLELFKLLNNPSEPISVELLNNQVRFQCNGTTIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K FLV+R +LL +L+R +I++N+K +G RL ++P L + S++
Sbjct: 240 GKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCSNN 298
>gi|171056694|ref|YP_001789043.1| DNA polymerase III subunit beta [Leptothrix cholodnii SP-6]
gi|170774139|gb|ACB32278.1| DNA polymerase III, beta subunit [Leptothrix cholodnii SP-6]
Length = 381
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 117/312 (37%), Positives = 190/312 (60%), Gaps = 14/312 (4%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ + +L LQ V IVE+++ LPIL+N+L+ K+ + ++D E+Q+ T +G
Sbjct: 2 IVLKAAQEQVLGALQAVSGIVERRHTLPILANVLIRKSGGRTELTTSDLEIQVRTAAELG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
S+ + V ARK IDILR LP + VT+ + ++ GKS+FTLQTL A ++P++
Sbjct: 62 GDESAFSTTVGARKLIDILRMLPSDQIVTLTAAQNKLTLQGGKSRFTLQTLPADDFPLVQ 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ + F++ QKTLK +++ V+F++A DIRYYLNG+L + K + V++DGHRL
Sbjct: 122 EAADFGPAFSVPQKTLKSLIDQVHFAMAVHDIRYYLNGILFVAEGKTLTLVATDGHRLAL 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLL------------ENKENP-VELKISNNQIKI 229
Q ++ + ++I+PRKTV LQRLL E E P +E++ ++NQ K
Sbjct: 182 AQATLEAEIPK-QEVILPRKTVLELQRLLKDDKASKEAAKQEGAEEPRIEMRFADNQAKF 240
Query: 230 IFSNIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVI 289
F +E ++KL++GKF DY VI ++ + R LL SLQR +I++++K KGVR+
Sbjct: 241 SFGGMEFVTKLVEGKFPDYNRVIPRNHKNHVTLGRAPLLASLQRAAILTSEKFKGVRVNF 300
Query: 290 KPNYLKITVSSS 301
+P L+I S++
Sbjct: 301 EPGTLRIASSNA 312
>gi|59800475|ref|YP_207187.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae FA 1090]
gi|59717370|gb|AAW88775.1| putative DNA polymerase III, beta subunit [Neisseria gonorrhoeae FA
1090]
Length = 367
Score = 239 bits (611), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 190/299 (63%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ E++++L PLQ IVE+ + LPILSN+L+ + L+TD E+QI T G
Sbjct: 2 LILQAERDSLLKPLQAFTGIVERLHTLPILSNVLIEGRGGQTKLLATDLEIQIDTAGPEG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G I A+KF DILR+LP V++ ++ + +K+GKS+F LQTL A ++P+M
Sbjct: 62 -GAGDFRITTNAKKFQDILRALPAGALVSLDWDDNRLTLKAGKSRFALQTLPAADFPMMN 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ F+L Q+ K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 VGEDISATFSLGQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
ID +++I+PRKTV L +LL N ++P+++++ + Q++ + I+SK+ID
Sbjct: 181 AACAIDADLPR-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K F+++R +LL +L+R+SI++N+K +G RL ++P L + S++
Sbjct: 240 GKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSNN 298
>gi|418291288|ref|ZP_12903315.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM220]
gi|421566180|ref|ZP_16011936.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM3081]
gi|433503608|ref|ZP_20460563.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM126]
gi|372200082|gb|EHP14213.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM220]
gi|402340789|gb|EJU75980.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM3081]
gi|432238810|gb|ELK94373.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM126]
Length = 367
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 191/299 (63%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ E++++L PLQ V IVE+++ LPILSN+L+ + L+TD E+QI T G
Sbjct: 2 LILQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G I A+KF DILR+LP V++ ++ + +K+GKS+F LQTL A ++P+M
Sbjct: 62 -GAGDFRITTNAKKFQDILRALPAGALVSLDWDDSRLTLKAGKSRFALQTLPAADFPMMN 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ F+L Q+ K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
ID +++I+PRKTV L +LL N ++P+++++ + Q++ + I+SK+ID
Sbjct: 181 AACAIDADLPR-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K F+++R +LL +L+R+SI++N+K +G RL ++ L + S++
Sbjct: 240 GKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQSGLLSVVCSNN 298
>gi|347817817|ref|ZP_08871251.1| DNA polymerase III subunit beta [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 372
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 121/314 (38%), Positives = 198/314 (63%), Gaps = 7/314 (2%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ T ++ +L LQ V +VE+++ LPIL+N+L+ K + ++D E+QI T +G
Sbjct: 2 IVLKTTQDKVLSVLQSVAGVVERRHTLPILANVLIRKTGNALQLTASDLEIQIRTTADLG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
V ARK I+ILR++P + V++ + +K GKS+FTLQ+L ++++P++
Sbjct: 62 GDTGDFATTVGARKLIEILRTMPGEQTVSLESAQSKLLLKGGKSRFTLQSLPSEDFPLVQ 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
++ + F+++QKTLK +L V F++A QDIRYYLNG+L + + + V++DGHRL +
Sbjct: 122 ESATFGPVFSVAQKTLKDLLGQVSFAMAVQDIRYYLNGILFVAEGQTLSLVATDGHRLAF 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLEN--KENP--VELKISNNQIKIIFSNIEIIS 238
+D + ++I+PRKTV LQRLL + EN +E++ +NNQ K F +E ++
Sbjct: 182 TSATLDVEVPR-QEVILPRKTVIELQRLLSDVGGENQPRIEMRFANNQAKFAFGAMEFVT 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KL++GKF DY VI + S + R LL SLQR +I+++DK KGVRL ++P L+ V
Sbjct: 241 KLVEGKFPDYNRVIPQNQKNSVTLGRVPLLASLQRTAIMTSDKFKGVRLNLEPGSLR--V 298
Query: 299 SSSNREKASSTDLI 312
+S+N E+ + D I
Sbjct: 299 ASNNAEQEEAEDEI 312
>gi|421559885|ref|ZP_16005752.1| DNA polymerase III, beta subunit [Neisseria meningitidis 92045]
gi|402334451|gb|EJU69739.1| DNA polymerase III, beta subunit [Neisseria meningitidis 92045]
Length = 367
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 191/299 (63%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ E++++L PLQ V IVE+++ LPILSN+L+ + L+TD E+QI T G
Sbjct: 2 LILQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G I A+KF DILR+LP V++ ++ + +K+GKS+F LQTL A ++P+M
Sbjct: 62 -GAGDFRITTNAKKFQDILRALPAGALVSLDWDDSRLTLKAGKSRFALQTLPAADFPMMN 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ F+L Q+ K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
ID +++I+PRKTV L +LL N ++P+++++ + Q++ + I+SK+ID
Sbjct: 181 AACAIDADLPH-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K F+++R +LL +L+R+SI++N+K +G RL ++ L + S++
Sbjct: 240 GKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQSGLLSVVCSNN 298
>gi|421541196|ref|ZP_15987326.1| DNA polymerase III, beta subunit [Neisseria meningitidis 93004]
gi|402315989|gb|EJU51543.1| DNA polymerase III, beta subunit [Neisseria meningitidis 93004]
Length = 367
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 191/299 (63%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ E++++L PLQ V IVE+++ LPILSN+L+ + L+TD E+QI T G
Sbjct: 2 LILQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G I A+KF DILR+LP V++ ++ + +K+GKS+F LQTL A ++P+M
Sbjct: 62 -GAGDFRITTNAKKFQDILRALPAGALVSLDWDDSRLTLKAGKSRFALQTLPAADFPMMN 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ F+L Q+ K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
ID +++I+PRKTV L +LL N ++P+++++ + Q++ + I+SK+ID
Sbjct: 181 AACAIDADLPH-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K F+++R +LL +L+R+SI++N+K +G RL ++ L + S++
Sbjct: 240 GKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQSGLLSVVCSNN 298
>gi|121634190|ref|YP_974435.1| DNA polymerase III subunit beta [Neisseria meningitidis FAM18]
gi|218767524|ref|YP_002342036.1| DNA polymerase III subunit beta [Neisseria meningitidis Z2491]
gi|304388448|ref|ZP_07370554.1| DNA-directed DNA polymerase III beta subunit [Neisseria
meningitidis ATCC 13091]
gi|385337374|ref|YP_005891247.1| DNA polymerase III subunit beta [Neisseria meningitidis WUE 2594]
gi|385339358|ref|YP_005893230.1| DNA polymerase III subunit beta [Neisseria meningitidis G2136]
gi|385341257|ref|YP_005895128.1| DNA polymerase III subunit beta [Neisseria meningitidis M01-240149]
gi|385856555|ref|YP_005903067.1| DNA polymerase III subunit beta [Neisseria meningitidis NZ-05/33]
gi|416179678|ref|ZP_11611114.1| DNA polymerase III, beta subunit [Neisseria meningitidis M6190]
gi|416189160|ref|ZP_11615122.1| DNA polymerase III, beta subunit [Neisseria meningitidis M0579]
gi|416190147|ref|ZP_11615627.1| DNA polymerase III, beta subunit [Neisseria meningitidis ES14902]
gi|416208027|ref|ZP_11621050.1| DNA polymerase III, beta subunit [Neisseria meningitidis 961-5945]
gi|421550978|ref|ZP_15996979.1| DNA polymerase III, beta subunit [Neisseria meningitidis 69166]
gi|421557889|ref|ZP_16003786.1| DNA polymerase III, beta subunit [Neisseria meningitidis 80179]
gi|433467941|ref|ZP_20425390.1| DNA polymerase III, beta subunit [Neisseria meningitidis 87255]
gi|433470024|ref|ZP_20427431.1| DNA polymerase III, beta subunit [Neisseria meningitidis 98080]
gi|433472194|ref|ZP_20429572.1| DNA polymerase III, beta subunit [Neisseria meningitidis 68094]
gi|433476318|ref|ZP_20433653.1| DNA polymerase III, beta subunit [Neisseria meningitidis 88050]
gi|433478447|ref|ZP_20435755.1| DNA polymerase III, beta subunit [Neisseria meningitidis 70012]
gi|433480488|ref|ZP_20437769.1| DNA polymerase III, beta subunit [Neisseria meningitidis 63041]
gi|433493313|ref|ZP_20450398.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM586]
gi|433495366|ref|ZP_20452427.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM762]
gi|433496029|ref|ZP_20453078.1| DNA polymerase III, beta subunit [Neisseria meningitidis M7089]
gi|433498054|ref|ZP_20455070.1| DNA polymerase III, beta subunit [Neisseria meningitidis M7124]
gi|433501554|ref|ZP_20458535.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM174]
gi|433514209|ref|ZP_20470992.1| DNA polymerase III, beta subunit [Neisseria meningitidis 63049]
gi|433516396|ref|ZP_20473158.1| DNA polymerase III, beta subunit [Neisseria meningitidis 2004090]
gi|433518408|ref|ZP_20475147.1| DNA polymerase III, beta subunit [Neisseria meningitidis 96023]
gi|433519712|ref|ZP_20476433.1| DNA polymerase III, beta subunit [Neisseria meningitidis 65014]
gi|433522581|ref|ZP_20479263.1| DNA polymerase III, beta subunit [Neisseria meningitidis 61103]
gi|433524719|ref|ZP_20481374.1| DNA polymerase III, beta subunit [Neisseria meningitidis 97020]
gi|433526832|ref|ZP_20483454.1| DNA polymerase III, beta subunit [Neisseria meningitidis 69096]
gi|433527666|ref|ZP_20484278.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM3652]
gi|433531166|ref|ZP_20487746.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM3642]
gi|433532053|ref|ZP_20488620.1| DNA polymerase III, beta subunit [Neisseria meningitidis 2007056]
gi|433535288|ref|ZP_20491820.1| DNA polymerase III, beta subunit [Neisseria meningitidis 2001212]
gi|433537387|ref|ZP_20493883.1| DNA polymerase III, beta subunit [Neisseria meningitidis 77221]
gi|433539630|ref|ZP_20496097.1| DNA polymerase III, beta subunit [Neisseria meningitidis 70030]
gi|433540845|ref|ZP_20497300.1| DNA polymerase III, beta subunit [Neisseria meningitidis 63006]
gi|120865896|emb|CAM09632.1| putative DNA polymerase III, beta subunit [Neisseria meningitidis
FAM18]
gi|121051532|emb|CAM07829.1| putative DNA polymerase III, beta subunit [Neisseria meningitidis
Z2491]
gi|254671989|emb|CBA04456.1| DNA polymerase III, beta subunit [Neisseria meningitidis alpha275]
gi|304337565|gb|EFM03728.1| DNA-directed DNA polymerase III beta subunit [Neisseria
meningitidis ATCC 13091]
gi|319409788|emb|CBY90096.1| DNA polymerase III beta subunit [Neisseria meningitidis WUE 2594]
gi|325131540|gb|EGC54247.1| DNA polymerase III, beta subunit [Neisseria meningitidis M6190]
gi|325135493|gb|EGC58111.1| DNA polymerase III, beta subunit [Neisseria meningitidis M0579]
gi|325139205|gb|EGC61751.1| DNA polymerase III, beta subunit [Neisseria meningitidis ES14902]
gi|325141558|gb|EGC64025.1| DNA polymerase III, beta subunit [Neisseria meningitidis 961-5945]
gi|325197602|gb|ADY93058.1| DNA polymerase III, beta subunit [Neisseria meningitidis G2136]
gi|325201463|gb|ADY96917.1| DNA polymerase III, beta subunit [Neisseria meningitidis
M01-240149]
gi|325207444|gb|ADZ02896.1| DNA polymerase III, beta subunit [Neisseria meningitidis NZ-05/33]
gi|389606611|emb|CCA45523.1| DNA polymerase III subunit beta [Neisseria meningitidis alpha522]
gi|402329515|gb|EJU64876.1| DNA polymerase III, beta subunit [Neisseria meningitidis 69166]
gi|402333608|gb|EJU68910.1| DNA polymerase III, beta subunit [Neisseria meningitidis 80179]
gi|432201254|gb|ELK57337.1| DNA polymerase III, beta subunit [Neisseria meningitidis 98080]
gi|432201493|gb|ELK57574.1| DNA polymerase III, beta subunit [Neisseria meningitidis 87255]
gi|432206820|gb|ELK62821.1| DNA polymerase III, beta subunit [Neisseria meningitidis 68094]
gi|432208173|gb|ELK64152.1| DNA polymerase III, beta subunit [Neisseria meningitidis 88050]
gi|432213105|gb|ELK69031.1| DNA polymerase III, beta subunit [Neisseria meningitidis 70012]
gi|432213765|gb|ELK69675.1| DNA polymerase III, beta subunit [Neisseria meningitidis 63041]
gi|432226554|gb|ELK82281.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM586]
gi|432227998|gb|ELK83700.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM762]
gi|432233395|gb|ELK89023.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM174]
gi|432236821|gb|ELK92425.1| DNA polymerase III, beta subunit [Neisseria meningitidis M7124]
gi|432237671|gb|ELK93264.1| DNA polymerase III, beta subunit [Neisseria meningitidis M7089]
gi|432245697|gb|ELL01162.1| DNA polymerase III, beta subunit [Neisseria meningitidis 63049]
gi|432251248|gb|ELL06619.1| DNA polymerase III, beta subunit [Neisseria meningitidis 2004090]
gi|432251718|gb|ELL07081.1| DNA polymerase III, beta subunit [Neisseria meningitidis 96023]
gi|432255703|gb|ELL11032.1| DNA polymerase III, beta subunit [Neisseria meningitidis 65014]
gi|432257545|gb|ELL12842.1| DNA polymerase III, beta subunit [Neisseria meningitidis 61103]
gi|432257770|gb|ELL13063.1| DNA polymerase III, beta subunit [Neisseria meningitidis 97020]
gi|432258885|gb|ELL14165.1| DNA polymerase III, beta subunit [Neisseria meningitidis 69096]
gi|432264607|gb|ELL19809.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM3642]
gi|432266566|gb|ELL21749.1| DNA polymerase III, beta subunit [Neisseria meningitidis NM3652]
gi|432268698|gb|ELL23865.1| DNA polymerase III, beta subunit [Neisseria meningitidis 2007056]
gi|432269920|gb|ELL25068.1| DNA polymerase III, beta subunit [Neisseria meningitidis 2001212]
gi|432271650|gb|ELL26773.1| DNA polymerase III, beta subunit [Neisseria meningitidis 70030]
gi|432271810|gb|ELL26932.1| DNA polymerase III, beta subunit [Neisseria meningitidis 77221]
gi|432277860|gb|ELL32906.1| DNA polymerase III, beta subunit [Neisseria meningitidis 63006]
Length = 367
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 191/299 (63%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ E++++L PLQ V IVE+++ LPILSN+L+ + L+TD E+QI T G
Sbjct: 2 LILQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G I A+KF DILR+LP V++ ++ + +K+GKS+F LQTL A ++P+M
Sbjct: 62 -GADDFRITTNAKKFQDILRALPAGALVSLDWDDSRLTLKAGKSRFALQTLPAADFPMMN 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ F+L Q+ K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
ID +++I+PRKTV L +LL N ++P+++++ + Q++ + I+SK+ID
Sbjct: 181 AACAIDADLPR-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K F+++R +LL +L+R+SI++N+K +G RL ++ L + S++
Sbjct: 240 GKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQSGLLSVVCSNN 298
>gi|345875350|ref|ZP_08827144.1| DNA polymerase III, beta subunit [Neisseria weaveri LMG 5135]
gi|417958485|ref|ZP_12601399.1| DNA polymerase III, beta subunit [Neisseria weaveri ATCC 51223]
gi|343966699|gb|EGV34952.1| DNA polymerase III, beta subunit [Neisseria weaveri ATCC 51223]
gi|343969258|gb|EGV37475.1| DNA polymerase III, beta subunit [Neisseria weaveri LMG 5135]
Length = 367
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 120/301 (39%), Positives = 195/301 (64%), Gaps = 6/301 (1%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ E++A+L PLQ V IVE+++ LPILSN+L+ + + L+TD E+QI T+ G
Sbjct: 2 LILQAERDALLKPLQAVTGIVERRHTLPILSNVLIESVHGQTNILATDLEIQINTH---G 58
Query: 63 YGNSSIN--IIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
S N I A+K DILR+LP+ V++ + +K+GKS+F LQTL A+++P+
Sbjct: 59 PATDSENFRITTNAKKLQDILRALPDGMPVSLDWAQNRLTLKAGKSRFALQTLPAEDFPL 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
M++ + F+L Q+ K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL
Sbjct: 119 MSVGEEVSVAFSLPQEAFKHMLSQVQYSMAVQDIRYYLNGLLMQAEGNQLRLVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
ID + +++I+PRKTV L +LL + PV +++ +NQ++ ++I ++SK+
Sbjct: 179 AVSCATIDAELPK-AEVILPRKTVLELFKLLNHPSEPVTVELLDNQVRFRCNDIVVVSKV 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
+DGKF D+ VI +K FLVNR +LL +L+R +I++N+K +G RL I+P L + S+
Sbjct: 238 VDGKFPDFNRVIPLDNDKIFLVNRTQLLGALERAAILANEKFRGARLHIRPGLLSVVCSN 297
Query: 301 S 301
+
Sbjct: 298 N 298
>gi|325267546|ref|ZP_08134198.1| DNA-directed DNA polymerase III beta subunit [Kingella
denitrificans ATCC 33394]
gi|324980896|gb|EGC16556.1| DNA-directed DNA polymerase III beta subunit [Kingella
denitrificans ATCC 33394]
Length = 367
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 123/313 (39%), Positives = 200/313 (63%), Gaps = 3/313 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ T ++ +L PLQ V IVE+K+ LPILSNIL+ + ++ L+TD E+QI T A G
Sbjct: 2 LILETGRDDLLKPLQAVTGIVERKHTLPILSNILLQSENGQVQLLATDLEIQIHTLGAQG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
I A+K DILR+LP++ V + + + + +K+GKS+F LQTL A+++P M
Sbjct: 62 -AQPDFRITTNAKKLQDILRALPDSSTVQLDLADHKLTLKAGKSRFNLQTLPAQDFPTMN 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
++ F L Q+TLK +++ V S+A QDIR+YLNGLL+ + + V++DGHRL +
Sbjct: 121 VDENTSAAFALPQETLKHMISQVQHSMAVQDIRFYLNGLLMQTEGNQLRLVATDGHRLAF 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
++ + D+I+PRKTV L +LL + V +++ +NQI+ ++ I+SK+ID
Sbjct: 181 TSATLETELPK-HDVILPRKTVLELNKLLTQPKENVVVELLDNQIRFRCNDTVIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSN 302
G+F DY VI + F+++R LL +L+R SI++N+K +GVRL+++P L IT +++
Sbjct: 240 GRFPDYNRVIPMDNKNIFVIDRLSLLGALERSSILANEKFRGVRLLVQPGSLHITCTNNE 299
Query: 303 REKASST-DLIYH 314
+E+AS D+ Y
Sbjct: 300 QEEASEELDIAYQ 312
>gi|302877247|ref|YP_003845811.1| DNA polymerase III subunit beta [Gallionella capsiferriformans
ES-2]
gi|302580036|gb|ADL54047.1| DNA polymerase III, beta subunit [Gallionella capsiferriformans
ES-2]
Length = 368
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 135/311 (43%), Positives = 196/311 (63%), Gaps = 8/311 (2%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN-S 66
EK +L PLQ+VI IVE+K +PILSN+L+ K KI F +TD E+QITT G + S
Sbjct: 7 EKETLLKPLQVVIGIVERKQTMPILSNVLIEKELGKIRFTATDLEIQITTTIETGADHES 66
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSK 126
+ I V +K +ILR LP+ KV+I ++ IKS KSKF LQ+L A+++P ++
Sbjct: 67 NAAITVGGKKLQEILRILPDQSKVSIEVKENKAQIKSNKSKFNLQSLPAQDFPTLSNQLA 126
Query: 127 YDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVN 186
+ +LSQ+ LK + + V F++AQQD+RYYLNG+L + AV++DGHRL Y +
Sbjct: 127 DARKISLSQRALKALFSSVQFAMAQQDVRYYLNGVLFVIEDNIFRAVATDGHRLAYNAIA 186
Query: 187 IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFL 246
I+ S +IIIPRK + L +LL + + +EL+ S+ Q+K FS IE+ +KLI+GKF
Sbjct: 187 IESS-SEKIEIIIPRKAIVELSKLLSDDDQLIELEFSSQQLKATFSGIELTTKLIEGKFP 245
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
DY+ VI N Y +NR + ++LQR +I+SN+K +GVR V+ L I S+S +E+A
Sbjct: 246 DYQRVIPN-YTNHLSINRTLVQQALQRAAILSNEKFRGVRFVLTEKNLCIISSNSEQEEA 304
Query: 307 S---STDLIYH 314
TD YH
Sbjct: 305 QVEIETD--YH 313
>gi|81251085|gb|ABB69885.1| DNA polymerase III beta chain [Nitrosospira sp. NIJS18]
Length = 369
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 126/299 (42%), Positives = 202/299 (67%), Gaps = 2/299 (0%)
Query: 4 VVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGY 63
++ T+++ +L PLQMV IVE+++ LPILSN+L+ + E ISF++TD E+QITT
Sbjct: 3 LIETDRDTLLKPLQMVTGIVERRHTLPILSNVLIERKHESISFIATDLEIQITTSAQDSV 62
Query: 64 GNSSIN-IIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
N + + VAA+K DILR+LP+ +V + + + K+GKS+F LQTL A+++P
Sbjct: 63 DNDEEHSVTVAAKKLQDILRALPDKAQVVLEMGENRLLAKAGKSRFNLQTLPAEDFPKFP 122
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ + + T+ QK LK +L+MV +++AQQDIRYYLNGLLL + + V++DGHRL +
Sbjct: 123 ESKEAQGKVTVQQKELKHLLSMVQYAMAQQDIRYYLNGLLLLLEDSYLKVVATDGHRLAF 182
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+ ++ ++I+PRK V L +LL + + P+ +++ NQ++ FSN+ ++SK++D
Sbjct: 183 ALMTLEAP-QEKKEVILPRKVVLELAKLLNDSDEPITIEMLQNQVRFTFSNVVLVSKVVD 241
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF DY VI + Y+K F +NR LL++LQR SI+SN+K +GVRL++ + L+I S+S
Sbjct: 242 GKFPDYNRVIPSGYQKQFDINRLLLLQTLQRASILSNEKFRGVRLILTTDNLRIVCSNS 300
>gi|121607006|ref|YP_994813.1| DNA polymerase III subunit beta [Verminephrobacter eiseniae EF01-2]
gi|121551646|gb|ABM55795.1| DNA polymerase III, beta subunit [Verminephrobacter eiseniae
EF01-2]
Length = 372
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 114/312 (36%), Positives = 193/312 (61%), Gaps = 7/312 (2%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+V+ ++ +L LQ V IVE+++ LPIL+N+L+ K + ++D E+QI T +G
Sbjct: 2 IVLKATQDKVLAALQSVAGIVERRHTLPILANVLIRKTGNALQLTTSDLEIQIRTTAELG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
++ RK IDILR++P + V++ + + +K+GKS+FTL +L +++P++
Sbjct: 62 GDTGECMTTMSVRKLIDILRTMPGEQTVSLESDQSRLILKAGKSRFTLHSLPGQDFPLVQ 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
++ + F++ QKTLK +L V F++A QDIRYYLNG+L + + + +++DGHRL +
Sbjct: 122 ESAAFGPVFSVPQKTLKSLLGQVSFTMAVQDIRYYLNGILFVAEGQTLSLIATDGHRLAF 181
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENP----VELKISNNQIKIIFSNIEIIS 238
+D + ++I+PRKTV LQRLL + + +E++ ++NQ K F +E ++
Sbjct: 182 ACATLDVQVPK-QEVILPRKTVLELQRLLSDADGDNRPHIEMQFASNQAKFTFGGMEFVT 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KL++GKF DY VI + + R LL SLQR +I+++DK KGVRL ++P L+ V
Sbjct: 241 KLVEGKFPDYNRVIPKNHHNCVTLGRAALLTSLQRTAIMTSDKFKGVRLNLEPGALR--V 298
Query: 299 SSSNREKASSTD 310
+SSN E+ + D
Sbjct: 299 ASSNAEQEEAVD 310
>gi|81251081|gb|ABB69882.1| DNA polymerase III beta chain [Nitrosospira sp. NIJS16]
Length = 369
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 126/299 (42%), Positives = 201/299 (67%), Gaps = 2/299 (0%)
Query: 4 VVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGY 63
++ T+++ +L PLQMV IVE+++ LPILSN+L+ + E ISF++TD E+QITT
Sbjct: 3 LIETDRDTLLKPLQMVTGIVERRHTLPILSNVLIERKHESISFIATDLEIQITTSAQDSV 62
Query: 64 GNSSIN-IIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
N + + VAA+K DILR+LP+ +V + + + K+GKS+F LQTL A+++P
Sbjct: 63 DNDEEHSVTVAAKKLQDILRALPDKAQVVLEMGENRLLAKAGKSRFNLQTLPAEDFPKFP 122
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ + + T+ QK LK +L+MV ++ AQQDIRYYLNGLLL + + V++DGHRL +
Sbjct: 123 ESKEAQGKVTVQQKELKHLLSMVQYATAQQDIRYYLNGLLLLLEDSYLKVVATDGHRLAF 182
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+ ++ ++I+PRK V L +LL + + P+ +++ NQ++ FSN+ ++SK++D
Sbjct: 183 ALMTLEAP-QEKKEVILPRKVVLELAKLLNDSDEPITIEMLQNQVRFTFSNVVLVSKVVD 241
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF DY VI + Y+K F +NR LL++LQR SI+SN+K +GVRL++ + L+I S+S
Sbjct: 242 GKFPDYNRVIPSGYQKQFDINRLLLLQTLQRASILSNEKFRGVRLILTTDNLRIVCSNS 300
>gi|118594215|ref|ZP_01551562.1| DNA polymerase III, beta subunit [Methylophilales bacterium
HTCC2181]
gi|118439993|gb|EAV46620.1| DNA polymerase III, beta subunit [Methylophilales bacterium
HTCC2181]
Length = 367
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 134/310 (43%), Positives = 196/310 (63%), Gaps = 10/310 (3%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILV-CKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ +L PL V IVEK++ LPILSN+L+ +++ + F +TD EVQIT A +
Sbjct: 7 RDVLLKPLSNVSGIVEKRHALPILSNLLLEGQDNNSLKFTATDLEVQIT-LNAKTEVPTD 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I +AARK DI RSLPE + + +E + +K+GKSKF LQTL AK+YP+M L+ +
Sbjct: 66 FSITIAARKLFDITRSLPEGSTIDLQVEESKVVLKAGKSKFNLQTLPAKDYPVMKLSEEE 125
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ Q LK IL V FS+AQQDIRYYLNGLL K + V +DGHRL++ + +
Sbjct: 126 KKLIRVPQNQLKAILKQVDFSMAQQDIRYYLNGLLFEVDGKKLNIVGTDGHRLSFTSLEL 185
Query: 188 ---DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGK 244
+KF + IIPRKT+ L +LL+ VE++++ NQ F I +ISK+IDGK
Sbjct: 186 KEPQEKFQT----IIPRKTILELIKLLDETAEEVEIQLTKNQAYFSFQEINLISKVIDGK 241
Query: 245 FLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNRE 304
F DY VI +E F ++R +LL S+QR SI+SN+K +G+R+VI+ + LK+ ++S +E
Sbjct: 242 FPDYHRVIPVGHENKFDIDRTQLLLSMQRASILSNEKYRGIRMVIEKSQLKLISNNSEQE 301
Query: 305 KASST-DLIY 313
+A D+ Y
Sbjct: 302 QAEEELDITY 311
>gi|241759458|ref|ZP_04757562.1| DNA polymerase III, beta subunit [Neisseria flavescens SK114]
gi|241320240|gb|EER56573.1| DNA polymerase III, beta subunit [Neisseria flavescens SK114]
Length = 367
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 115/299 (38%), Positives = 193/299 (64%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ +++++L PLQ V IVE+++ LPILSN+L+ + L+TD E+QI T
Sbjct: 2 LILQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPES 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
I A+KF DILR+LP++ V++ + + +++GKS+F LQTL A+++P+M+
Sbjct: 62 QA-GDFRITTNAKKFQDILRALPDSALVSLDWADNRLTLRAGKSRFALQTLPAEDFPLMS 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ S F+L+Q+T K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 VGSDVSATFSLTQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
I+ + +++I+PRKTV L +LL N + +++ +NQ++ + I+SK+ID
Sbjct: 181 AASQIEAELPK-TEVILPRKTVLELFKLLNNPSESITVELLDNQVRFQCNGTTIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K FLV+R +LL +L+R +I++N+K +G RL ++P L + S++
Sbjct: 240 GKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCSNN 298
>gi|385329144|ref|YP_005883447.1| putative DNA polymerase III, beta subunit [Neisseria meningitidis
alpha710]
gi|308389996|gb|ADO32316.1| putative DNA polymerase III, beta subunit [Neisseria meningitidis
alpha710]
Length = 367
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/299 (38%), Positives = 190/299 (63%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ E++++L PLQ V IVE+++ LPILSN+L+ + L+TD E+QI T G
Sbjct: 2 LILQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G I A+KF DILR+L V++ ++ + +K+GKS+F LQTL A ++P+M
Sbjct: 62 -GAGDFRITTNAKKFQDILRALLAGALVSLDWDDSRLTLKAGKSRFALQTLPAADFPMMN 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ F+L Q+ K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
ID +++I+PRKTV L +LL N ++P+++++ + Q++ + I+SK+ID
Sbjct: 181 AACAIDADLPH-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K F+++R +LL +L+R+SI++N+K +G RL ++ L + S++
Sbjct: 240 GKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQSGLLSVVCSNN 298
>gi|313669120|ref|YP_004049404.1| DNA polymerase III subunit beta [Neisseria lactamica 020-06]
gi|421862976|ref|ZP_16294678.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379507|emb|CBX21873.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|313006582|emb|CBN88047.1| putative DNA polymerase III, beta subunit [Neisseria lactamica
020-06]
Length = 367
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 114/299 (38%), Positives = 190/299 (63%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ E++++L PLQ V IVE+++ LPILSN+L+ + L+TD E+QI T +
Sbjct: 2 LILQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGRGGQTKLLATDLEIQIDT-SGPE 60
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G + I A+KF DILR+LP V++ ++ + +K+GKS+F LQTL A ++P +
Sbjct: 61 CGAADFRITTNAKKFQDILRALPAGALVSLDWDDNRLTLKAGKSRFALQTLPADDFPQIN 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ F L Q+ K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 IGEDVSAAFELEQEAFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGGQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
ID +++I+PRKTV L +LL N +P+++++ + Q++ + I+SK+ID
Sbjct: 181 SACAIDADLPR-AELILPRKTVLELFKLLNNPSDPIQVELLDKQVRFRCNGTTIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K F+++R +LL +L+R +I++N+K++G RL ++P L + S++
Sbjct: 240 GKFPDFNRVIPLDNDKIFVLSRAELLGALERAAILANEKIRGARLFLQPGLLSVVCSNN 298
>gi|226942153|ref|YP_002797227.1| DNA polymerase III subunit beta [Laribacter hongkongensis HLHK9]
gi|226717080|gb|ACO76218.1| DnaN [Laribacter hongkongensis HLHK9]
Length = 377
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 114/298 (38%), Positives = 195/298 (65%), Gaps = 1/298 (0%)
Query: 4 VVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGY 63
++ +++A+L PLQ V IVE+++ LPIL+N+L+ K+ + ++FL+TD E+QIT +
Sbjct: 3 ILQADRDALLKPLQAVTGIVERRHTLPILANVLIEKSGDTLTFLATDLEIQITHASPEPI 62
Query: 64 GNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTL 123
+ +A+KF DILR++P+ VT+ E+ + +K+GKS+F LQ+L A ++P++T
Sbjct: 63 AGPDFRLTTSAKKFSDILRAIPDRTTVTLDHEDGRLTVKAGKSRFNLQSLPADDFPLLTQ 122
Query: 124 NSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
+ F L Q+ K +L+ V +++A QDIRYYLNGLLL + V++DGHRL +
Sbjct: 123 SLDAQAGFALPQRDFKALLSQVQYAMAVQDIRYYLNGLLLVTDGNQVKLVATDGHRLAFA 182
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDG 243
Q+ +D + +++I+PRKT+ L +LL + ++ +++ + NNQ++ F I+SK++DG
Sbjct: 183 QMTLDTPLPA-AEVILPRKTITELYKLLADSDDTIDITLMNNQVRFAFGGSVIVSKVVDG 241
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
KF DY VI +K FL+ R L ++L R +I++N+K +GVRL I+ L+I ++S
Sbjct: 242 KFPDYNRVIPLDNDKLFLIGRQALQQALARAAILANEKFRGVRLAIEAGRLRIQCNNS 299
>gi|416174441|ref|ZP_11609197.1| DNA polymerase III, beta subunit, partial [Neisseria meningitidis
OX99.30304]
gi|325129494|gb|EGC52323.1| DNA polymerase III, beta subunit [Neisseria meningitidis
OX99.30304]
Length = 361
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 187/293 (63%), Gaps = 2/293 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
++++L PLQ V IVE+++ LPILSN+L+ + L+TD E+QI T G G
Sbjct: 2 RDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEG-GAGDF 60
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
I A+KF DILR+LP V++ ++ + +K+GKS+F LQTL A ++P+M +
Sbjct: 61 RITTNAKKFQDILRALPAGALVSLDWDDSRLTLKAGKSRFALQTLPAADFPMMNVGEDIS 120
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
F+L Q+ K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y ID
Sbjct: 121 ATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRLVATDGHRLAYAACAID 180
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+++I+PRKTV L +LL N ++P+++++ + Q++ + I+SK+IDGKF D+
Sbjct: 181 ADLPH-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKVIDGKFPDF 239
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
VI +K F+++R +LL +L+R+SI++N+K +G RL ++ L + S++
Sbjct: 240 NRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQSGLLSVVCSNN 292
>gi|225077252|ref|ZP_03720451.1| hypothetical protein NEIFLAOT_02307 [Neisseria flavescens
NRL30031/H210]
gi|224951396|gb|EEG32605.1| hypothetical protein NEIFLAOT_02307 [Neisseria flavescens
NRL30031/H210]
Length = 367
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/299 (38%), Positives = 192/299 (64%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ +++++L PLQ V IVE+++ LPILSN+L+ + L+TD E+QI T
Sbjct: 2 LILQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPES 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
I A+KF DILR+LP++ V++ + + +++GKS+F LQTL A+++P+M
Sbjct: 62 QA-GDFRITTNAKKFQDILRALPDSALVSLDWADNRLTLRAGKSRFALQTLPAEDFPLMN 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ S F+L+Q+T K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 VGSDVSATFSLTQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
I+ + +++I+PRKTV L +LL N + +++ +NQ++ + I+SK+ID
Sbjct: 181 AASQIEAELPK-TEVILPRKTVLELFKLLNNPSESITVELLDNQVRFQCNGTTIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K FLV+R +LL +L+R +I++N+K +G RL ++P L + S++
Sbjct: 240 GKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCSNN 298
>gi|261380782|ref|ZP_05985355.1| DNA polymerase III, beta subunit [Neisseria subflava NJ9703]
gi|284796246|gb|EFC51593.1| DNA polymerase III, beta subunit [Neisseria subflava NJ9703]
Length = 367
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/299 (38%), Positives = 192/299 (64%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ +++++L PLQ V IVE+++ LPILSN+L+ + L+TD E+QI T
Sbjct: 2 LILQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPES 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
I A+KF DILR+LP++ V++ + + +++GKS+F LQTL A+++P+M
Sbjct: 62 QA-GDFRITTNAKKFQDILRALPDSALVSLDWADNRLTLRAGKSRFALQTLPAEDFPLMN 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ S F+L+Q+T K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 VGSDVSATFSLTQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
I+ + +++I+PRKTV L +LL N + +++ +NQ++ + I+SK+ID
Sbjct: 181 AASQIEAELPK-TEVILPRKTVLELFKLLNNPSESITVELLDNQVRFQCNGTTIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K FLV+R +LL +L+R +I++N+K +G RL ++P L + S++
Sbjct: 240 GKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCSNN 298
>gi|404378962|ref|ZP_10984038.1| DNA polymerase III, beta subunit [Simonsiella muelleri ATCC 29453]
gi|294483201|gb|EFG30887.1| DNA polymerase III, beta subunit [Simonsiella muelleri ATCC 29453]
Length = 367
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 120/299 (40%), Positives = 194/299 (64%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ T+++++L PLQ V IVE+K+ LPILSN+L+ +I L+TD E+QI T A
Sbjct: 2 LILQTDRDSLLKPLQAVTGIVERKHTLPILSNVLLESKDGRIHILATDLEIQIHTQGAEN 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ A+K DILR+LP+ V + + + +K+GKS+F LQTL A+++P M+
Sbjct: 62 -DKGDFRLTTNAKKLQDILRALPDGAIVQLDWADNRLTLKAGKSRFNLQTLPAEDFPTMS 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+N F+L+Q+T K +++ V +S+A QDIRYYLNGLLL ++ + VS+DGHRL Y
Sbjct: 121 VNDSAQVRFSLTQETFKHMISQVQYSMAVQDIRYYLNGLLLQVEENQLRLVSTDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
I+ S +++I+PRKTV L +LL +E+++ NQI++ ++ I+SK+ID
Sbjct: 181 SVCEIEANLSK-TEVILPRKTVLELNKLLNQPNELIEIELLGNQIRLTCNDTVIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF DY VI +K FL++R LL +L+R +I++N+K KGV+L + L+++ +++
Sbjct: 240 GKFPDYNRVIPLDNDKIFLISRTDLLGALERSAILANEKFKGVKLFLSAGLLRVSCTNN 298
>gi|91774358|ref|YP_544114.1| DNA polymerase III, beta subunit [Methylobacillus flagellatus KT]
gi|91708345|gb|ABE48273.1| DNA polymerase III, beta subunit [Methylobacillus flagellatus KT]
Length = 367
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 123/296 (41%), Positives = 188/296 (63%), Gaps = 7/296 (2%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
++ +L PL V SIVE+++ LPILSN+L+ +KI +TD E+QI+ G +
Sbjct: 7 RDTLLKPLSSVSSIVERRHTLPILSNLLLEAKQDKIKLTATDLEMQISLSVDSAAG-GEL 65
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
+ ++A+K +DI RSLPE ++T+ ++ + +K+GKS+F LQTL A +YP+MT D
Sbjct: 66 STTISAKKLLDICRSLPENAEITMATQDSRIQVKTGKSRFNLQTLPAGDYPLMT--KTED 123
Query: 129 FEFTL---SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
TL QK+LK + V F++AQQDIRYYLNGLL + V +DGHRL++
Sbjct: 124 ASSTLIKIGQKSLKRLFKQVEFAMAQQDIRYYLNGLLFEVNGNRLNVVGTDGHRLSFTST 183
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKF 245
+ + +II+PRKTV L +LL+ E+ V ++++N Q F +I +ISK+IDGKF
Sbjct: 184 ELASSYEK-QEIILPRKTVIELIKLLDESEDEVTIELANGQANFAFGDIHLISKVIDGKF 242
Query: 246 LDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DY VI ++ SF V+R +L S+QR SI+SN+K +G+R+V+ N LK+ ++S
Sbjct: 243 PDYTRVIPTGHQNSFSVDRTMILLSMQRASILSNEKYRGIRMVLSANSLKLISTNS 298
>gi|319639359|ref|ZP_07994110.1| DNA polymerase III [Neisseria mucosa C102]
gi|317399543|gb|EFV80213.1| DNA polymerase III [Neisseria mucosa C102]
Length = 367
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 114/299 (38%), Positives = 193/299 (64%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ +++++L PLQ V IVE+++ LPILSN+L+ + L+TD E+QI T
Sbjct: 2 LILQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPES 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
I A+KF DILR+LP++ V++ + + +++GKS+F LQTL A+++P+M+
Sbjct: 62 QA-GDFRITTNAKKFQDILRALPDSALVSLDWADNRLTLRAGKSRFALQTLPAEDFPLMS 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ + F+L+Q+T K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 VGNDVSATFSLTQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
I+ + +++I+PRKTV L +LL N + +++ +NQ++ + I+SK+ID
Sbjct: 181 AASQIEAELPK-TEVILPRKTVLELFKLLNNPSESITVELLDNQVRFQCNGTTIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K FLV+R +LL +L+R +I++N+K +G RL ++P L + S++
Sbjct: 240 GKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCSNN 298
>gi|261378192|ref|ZP_05982765.1| DNA polymerase III, beta subunit [Neisseria cinerea ATCC 14685]
gi|269145661|gb|EEZ72079.1| DNA polymerase III, beta subunit [Neisseria cinerea ATCC 14685]
Length = 367
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 189/299 (63%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ E++++L PLQ V IVE+++ LPILSN+L+ + L+TD E+QI T +
Sbjct: 2 LILQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGRDGQTRLLATDLEIQIDT-SGPE 60
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ I A+KF DILR+LP V++ +N + +K+GKS+F LQTL A+++P M
Sbjct: 61 CSAADFRITTNAKKFQDILRALPAGALVSLDWDNNRLTLKAGKSRFALQTLPAEDFPQMN 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ F L Q+ K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 IGEDVSAVFELEQEAFKSMLSQVQYSMAVQDIRYYLNGLLMQVEGGQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
ID +++I+PRKTV L +LL N +P+++++ + Q++ + I+SK+ID
Sbjct: 181 SACAIDADLPR-TEVILPRKTVLELFKLLNNPSDPIQVELLDKQVRFRCNGTTIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K F+++R +LL +L+R SI++N+K +G RL ++P L + S++
Sbjct: 240 GKFPDFNRVIPLDNDKIFVLSRVELLGALERASILANEKFRGARLFLQPGLLSVVCSNN 298
>gi|349574615|ref|ZP_08886555.1| DNA-directed DNA polymerase III beta subunit [Neisseria shayeganii
871]
gi|348013823|gb|EGY52727.1| DNA-directed DNA polymerase III beta subunit [Neisseria shayeganii
871]
Length = 367
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 191/299 (63%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ E++ +L PLQ V IVE+K+ LPILSN+L+ +++ + + L+TD E+QI T+
Sbjct: 2 LILQAERDTLLKPLQAVTGIVERKHTLPILSNVLIERSNGQTNILATDLEIQIHTH-GPH 60
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
I A+K DILR+LPE V + + +K+GKS+F LQTL A+++P+M+
Sbjct: 61 TDAEDFRITTNAKKLQDILRALPEGAIVALDWAQNRLTLKAGKSRFALQTLPAEDFPLMS 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ + FTL Q+T K +L+ V +++A QDIRYYLNGLL+ + ++ V++DGHRL Y
Sbjct: 121 VGEEVVSAFTLPQETFKNMLSQVQYAMAVQDIRYYLNGLLMQVEGDSLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
ID +++I+PRKTV L +LL PV +++ NNQ++ ++ ++SK++D
Sbjct: 181 SAAVIDANLPK-AEVILPRKTVLELFKLLNRPAEPVTVELLNNQVRFRCNDTVVVSKVVD 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K F ++R LL +L+R +I++N+K +G RL ++P L + S++
Sbjct: 240 GKFPDFNRVIPQDNDKIFQLSRADLLGALERAAILANEKFRGARLQLRPGLLSVLCSNN 298
>gi|294668098|ref|ZP_06733205.1| DNA polymerase III, beta subunit [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291309806|gb|EFE51049.1| DNA polymerase III, beta subunit [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 367
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 189/299 (63%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ +++A+L PLQ V IVE+++ LPILSN+L+ + + L+TD E+QI T
Sbjct: 2 LILQADRDALLKPLQAVTGIVERRHTLPILSNVLLESTHGQTNILATDLEIQINTDGPKS 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
I A+K DILR+LPE +V + + +K+GKS+F LQTL A+++P+M+
Sbjct: 62 EA-GDFRITTNAKKLQDILRALPEGAQVALDWAQNRLTLKAGKSRFALQTLPAEDFPLMS 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ + F+L+Q+ LK +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 VGEEVSSAFSLTQEALKGMLSQVQYSMAVQDIRYYLNGLLMQTEGDQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
I+ +++I+PRKTV L +LL V +++ NNQ++ + I+SK++D
Sbjct: 181 SAATIEADLPK-AEVILPRKTVLELFKLLNQPNEQVSVELLNNQVRFRCNGTVIVSKVVD 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K FL+NR+ LL +L+R +I++N+K +G RL ++P L + S++
Sbjct: 240 GKFPDFNRVIPLDNDKIFLLNRSHLLGALERAAILANEKFRGARLHLQPGLLSVVCSNN 298
>gi|81251073|gb|ABB69876.1| DNA polymerase III beta chain [Nitrosospira sp. NRS527]
Length = 369
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 128/299 (42%), Positives = 197/299 (65%), Gaps = 2/299 (0%)
Query: 4 VVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA-VG 62
++ T+++ +L PLQ V IVE+++ LPILSN+L+ + EKISF++TD E+QITT V
Sbjct: 3 LIETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQEKISFIATDLEIQITTSVEDVN 62
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
++ V A+K DILR+LP+ +VT+ + K+GKS+F LQTL +++P
Sbjct: 63 PAGEERSVTVPAKKLQDILRALPDKVQVTLETGENRLHAKAGKSRFNLQTLPVEDFPKFP 122
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+++ + T+ QK LK IL+MV +++AQQDIRYYLNGLLL + + V++DGHRL +
Sbjct: 123 ESTEPQAKITIQQKELKHILSMVQYAMAQQDIRYYLNGLLLLMEDNYLKVVATDGHRLAF 182
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+ + ++I+PRK V L RLL + + PV ++ NQ++ FSN+ ++SK++D
Sbjct: 183 ALMLLAAP-QEKKEVILPRKVVLELSRLLNDVDEPVTVEFLQNQVRFTFSNVMLVSKVVD 241
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF DY VI YEK F +NR LL++LQR SI+SN+K +GVRL++ L+I ++S
Sbjct: 242 GKFPDYNRVIPEGYEKQFDINRLLLLQTLQRASILSNEKFRGVRLILTSGNLRIVCNNS 300
>gi|253995376|ref|YP_003047440.1| DNA polymerase III subunit beta [Methylotenera mobilis JLW8]
gi|253982055|gb|ACT46913.1| DNA polymerase III, beta subunit [Methylotenera mobilis JLW8]
Length = 366
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 123/303 (40%), Positives = 189/303 (62%), Gaps = 4/303 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M + +N E +L PL V SIVEK++ LPILSN+L+ KI +TD E+QI+
Sbjct: 1 MNIQINRE--TLLKPLTSVTSIVEKRHTLPILSNLLLEAKQNKIHLTATDLEMQISLSVD 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
N + ++A+K +DI RSLP+ + + + + +K+GKS+F LQTL A +YP+
Sbjct: 59 SATSND-FSTTISAKKLLDICRSLPDNSDINMATNDSRITVKAGKSRFNLQTLPAADYPV 117
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
MT T+ Q+ LK +L V F++AQQDIRYYLNGLL+ + V +DGHRL
Sbjct: 118 MTKTQSQGTVITIPQRQLKELLKQVEFAMAQQDIRYYLNGLLVEVVANRLNIVGTDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
++ + + + D+I+PRKTV L +LL++ E V ++I+NNQ+ F NI +ISK+
Sbjct: 178 SFTSTELKENYEK-QDVILPRKTVIELIKLLDDSEEDVNVEIANNQVNFSFGNIRLISKV 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDGKF DY VI ++ +F R +L ++QR SI+SN+K +G+R+V+ N LK+ ++
Sbjct: 237 IDGKFPDYNRVIPTGHQNTFTTERLGVLLAMQRASILSNEKYRGIRMVLSNNNLKLISTN 296
Query: 301 SNR 303
S++
Sbjct: 297 SDQ 299
>gi|261400580|ref|ZP_05986705.1| DNA polymerase III, beta subunit [Neisseria lactamica ATCC 23970]
gi|269209656|gb|EEZ76111.1| DNA polymerase III, beta subunit [Neisseria lactamica ATCC 23970]
Length = 367
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 113/299 (37%), Positives = 189/299 (63%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ E++++L PLQ V IVE+++ LPILSN+L+ + L+TD E+QI T +
Sbjct: 2 LILQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGRGGQTKLLATDLEIQIDT-SGPE 60
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G + I A+KF DILR+LP V++ ++ + +K+GKS+F LQTL A ++P +
Sbjct: 61 CGAADFRITTNAKKFQDILRALPAGALVSLDWDDNRLTLKAGKSRFALQTLPADDFPQIN 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ F L Q+ K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 IGEDVSAAFELEQEAFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGGQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
I +++I+PRKTV L +LL N +P+++++ + Q++ + I+SK+ID
Sbjct: 181 SACAIGADLPR-AELILPRKTVLELFKLLNNPSDPIQVELLDKQVRFRCNGTTIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K F+++R +LL +L+R +I++N+K++G RL ++P L + S++
Sbjct: 240 GKFPDFNRVIPLDNDKIFVLSRAELLGALERAAILANEKIRGARLFLQPGLLSVVCSNN 298
>gi|298369734|ref|ZP_06981051.1| DNA polymerase III, beta subunit [Neisseria sp. oral taxon 014 str.
F0314]
gi|298282291|gb|EFI23779.1| DNA polymerase III, beta subunit [Neisseria sp. oral taxon 014 str.
F0314]
Length = 367
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 115/299 (38%), Positives = 193/299 (64%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ +++++L PLQ V IVE+++ LPILSN+L+ ++ + + L+TD E+QI T
Sbjct: 2 LILQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESSNGQTNILATDLEIQINTAGPES 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
I A+KF DILR+LPE+ V++ + + +K+GKS+F LQTL A+++P+M+
Sbjct: 62 Q-TGDFRITTNAKKFQDILRALPESAIVSLDWADNRLTLKAGKSRFALQTLPAEDFPLMS 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ F+L+Q+T K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 VGHDVSTAFSLTQETFKNMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
I+ + +++I+PRKTV L +LL N + +++ +NQ++ + I+SK+ID
Sbjct: 181 ATSQIEAELPK-TEVILPRKTVLELFKLLNNPSEQITVELLDNQVRFQCNGTTIVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K FLV+R L +L+R +I++N+K +G RL ++P L + S++
Sbjct: 240 GKFPDFNRVIPLDNDKIFLVSRTDFLGALERAAILANEKFRGARLFLQPGLLSVVCSNN 298
>gi|81251069|gb|ABB69873.1| DNA polymerase III beta chain [Nitrosospira sp. GS832]
Length = 369
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 128/299 (42%), Positives = 197/299 (65%), Gaps = 2/299 (0%)
Query: 4 VVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA-VG 62
++ T+++ +L PLQ V IVE+++ LPILSN+L+ + EKISF++TD E+QITT V
Sbjct: 3 LIETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQEKISFIATDLEIQITTSVEDVN 62
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
++ V A+K DILR+LP+ +VT+ + K+GKS+F LQTL +++P
Sbjct: 63 PAGEEHSVTVPAKKLQDILRALPDKVQVTLETGENRLHAKAGKSRFNLQTLPVEDFPKFP 122
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+++ + T+ QK LK IL+MV +++AQQDIRYYLNGLLL + + V++DGHRL +
Sbjct: 123 ESTEPQAKITIQQKELKHILSMVQYAMAQQDIRYYLNGLLLLMEDNYLKVVATDGHRLAF 182
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+ + ++I+PRK V L RLL + + PV ++ NQ++ FSN+ ++SK++D
Sbjct: 183 ALMLLAAP-QEKKEVILPRKVVLELSRLLNDVDEPVTVEFLQNQVRFTFSNVILVSKVVD 241
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF DY VI YEK F +NR LL++LQR SI+SN+K +GVRL++ L+I ++S
Sbjct: 242 GKFPDYNRVIPEGYEKQFDINRLLLLQTLQRASILSNEKFRGVRLILTSGNLRIVCNNS 300
>gi|89092265|ref|ZP_01165219.1| DNA polymerase III subunit beta [Neptuniibacter caesariensis]
gi|89083353|gb|EAR62571.1| DNA polymerase III subunit beta [Oceanospirillum sp. MED92]
Length = 367
Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 114/309 (36%), Positives = 189/309 (61%), Gaps = 3/309 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ V++ E A++ PLQ+V +VE++ LP+LSNIL+ +++S TD EV++
Sbjct: 1 MKFVISRE--ALIKPLQLVAGVVERRQTLPVLSNILLVAEGDQLSMTGTDLEVELVGRVT 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + ++ V ARK +DI +SLP++ ++ + + + M IK+G+S+FTL TL A E+P
Sbjct: 59 LDEPAEAGSVTVPARKLMDICKSLPDSARIELTLTGQKMVIKAGRSRFTLSTLPAAEFPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ +S E ++ Q L+ +++ FS+AQQD+RYYLNG+LL + +VS+DGHRL
Sbjct: 119 VE-DSPETLELSMVQHQLRNLIDKTGFSMAQQDVRYYLNGMLLEIANGQLRSVSTDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+++ + II+PRK + L RLL+N E + L I + I+ + SKL
Sbjct: 178 ATSVTDVEAEDGMQHQIIVPRKGILELARLLQNGEEELRLVIGASHIRAHVGDFTFTSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
+DGKF DY+ VI +K L +R +L + L RI+I+SN+K +GVRL + YL++ ++
Sbjct: 238 VDGKFPDYERVIPKNGDKILLSDRMELRQVLSRIAILSNEKYRGVRLSLSSGYLQVMANN 297
Query: 301 SNREKASST 309
+E+A T
Sbjct: 298 PEQEEAEET 306
>gi|429742945|ref|ZP_19276547.1| DNA polymerase III, beta subunit [Neisseria sp. oral taxon 020 str.
F0370]
gi|429167156|gb|EKY09082.1| DNA polymerase III, beta subunit [Neisseria sp. oral taxon 020 str.
F0370]
Length = 367
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 115/299 (38%), Positives = 188/299 (62%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ +++++L PLQ V IVE+++ LPILSN+L+ + + L+TD E+QI T
Sbjct: 2 LILQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESAHGQTNILATDLEIQINTAGPES 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
I A+K DILR+LPE +V + + +K+GKS+F LQTL A+++P+M+
Sbjct: 62 EA-GDFRITTNAKKLQDILRALPEGAQVALDWAQNRLTLKAGKSRFALQTLPAEDFPLMS 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ + F+L Q+TLK +L V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 VGEEVSSAFSLPQETLKTMLAQVQYSMAVQDIRYYLNGLLMQTEGSQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
I+ +++I+PRKTV L +LL E V +++ NQ++ ++ I+SK++D
Sbjct: 181 SAAAIEADLPK-AEVILPRKTVLELFKLLNRPEEQVSVELLGNQVRFRCNDSVIVSKVVD 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF D+ VI +K F++NR LL +L+R +I++N+K +G RL ++P L + S++
Sbjct: 240 GKFPDFNRVIPLDNDKIFVLNRANLLGALERAAILANEKFRGARLHLQPGLLSVVCSNN 298
>gi|297537199|ref|YP_003672968.1| DNA polymerase III subunit beta [Methylotenera versatilis 301]
gi|297256546|gb|ADI28391.1| DNA polymerase III, beta subunit [Methylotenera versatilis 301]
Length = 366
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/304 (40%), Positives = 196/304 (64%), Gaps = 6/304 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQIT-TYT 59
M + +N E +L PL V SIVEK++ LPILSN+L+ KI +TD E+QI+ +
Sbjct: 1 MNIQINRE--TLLKPLTSVTSIVEKRHTLPILSNLLLEAKQNKIHLTATDLEMQISLSIE 58
Query: 60 AVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP 119
+ G+ S I +A+K +DI RSLP++ ++ + + + +K+GKS+F LQTL A +YP
Sbjct: 59 SATTGDFSTTI--SAKKLLDICRSLPDSSEINMATNDSRITLKAGKSRFNLQTLPAADYP 116
Query: 120 IMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+MT T+ Q+ LK +L V F++AQQDIRYYLNGLL + V +DGHR
Sbjct: 117 VMTKTQGESTLVTIGQRQLKDLLKQVEFAMAQQDIRYYLNGLLFEVVANRLNIVGTDGHR 176
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L++ + + + D+I+PRKTV L +LL++ + V++++++NQ+ FS+ ++ISK
Sbjct: 177 LSFTSTELKQNYDK-QDVILPRKTVIELIKLLDDSDEDVQIELASNQVNFSFSHFKLISK 235
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
+IDGKF DY VI ++ SF +R +L ++QR SI+SN+K +G+R+V+ N LK+ +
Sbjct: 236 VIDGKFPDYNRVIPTGHQNSFTTDRVGVLLAMQRASILSNEKYRGIRMVLSNNNLKLIST 295
Query: 300 SSNR 303
+S++
Sbjct: 296 NSDQ 299
>gi|253997715|ref|YP_003049778.1| DNA polymerase III subunit beta [Methylovorus glucosetrophus
SIP3-4]
gi|253984394|gb|ACT49251.1| DNA polymerase III, beta subunit [Methylovorus glucosetrophus
SIP3-4]
Length = 367
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/294 (40%), Positives = 190/294 (64%), Gaps = 3/294 (1%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
++ +L PL V SIVE+++ LPILSN+L+ EKI +TD E+QI+ G +
Sbjct: 7 RDTLLKPLSSVTSIVERRHTLPILSNLLLEAKDEKIVLTATDLEMQISLALQTPVGGE-L 65
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
+ ++A+K +DI RSLPE ++T+ + +K+GKS+F LQTL A +YP+MT +
Sbjct: 66 STTISAKKLLDICRSLPENAEITMATAESRIQVKTGKSRFNLQTLPAADYPVMTKATGTT 125
Query: 129 FEF-TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ T+ QK+LK + V F++AQQDIRYYLNGLL + V +DGHRL++ +
Sbjct: 126 YTVVTIDQKSLKRLFKQVEFAMAQQDIRYYLNGLLFEVNGNRLNVVGTDGHRLSFTSTEL 185
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + ++I+PRKTV L +LL++ E V ++I++ Q+ F +I++ISK+IDGKF D
Sbjct: 186 AQSYEK-QELILPRKTVIELIKLLDDSEEDVTIEIASGQVNFSFGDIKLISKVIDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
Y VI ++ SF V+R +L ++QR SI+SN+K +G+R+V+ + L++ ++S
Sbjct: 245 YTRVIPVGHKNSFNVDRMTILLAMQRASILSNEKYRGIRMVLGSDSLRLISTNS 298
>gi|92112138|ref|YP_572066.1| DNA polymerase III subunit beta [Chromohalobacter salexigens DSM
3043]
gi|91795228|gb|ABE57367.1| DNA polymerase III, beta subunit [Chromohalobacter salexigens DSM
3043]
Length = 367
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 177/298 (59%), Gaps = 1/298 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ A+L PL +V +VE++ LP+LSN+L+ +++ TD EV++ T + +
Sbjct: 7 REALLRPLSLVAGVVERRQTLPVLSNVLLQVQDSQLALTGTDLEVELIGRTTPHHVDEPG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
+ V ARK +DI +SLPE +T +E +++G+S+FTL TL E+P + S+ D
Sbjct: 67 SATVPARKLMDICKSLPEQTDITFTLEEGRAILRAGRSRFTLSTLPVAEFPNIE-GSQSD 125
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
TL++ TLK +++ F++AQQD+RYYLNG+LL F + V++DGHRL + D
Sbjct: 126 TTLTLARGTLKHLIDATSFAMAQQDVRYYLNGMLLEFGHHLVRTVATDGHRLAVCARSAD 185
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ +I+PRK + L RLL+ + PVEL I ++ + SKL+DGKF DY
Sbjct: 186 VEVEPSQKLIVPRKGILELARLLDGSDEPVELTIGGTHLRAQTGDFTFTSKLVDGKFPDY 245
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
VI +K + R +L + L R +I+SN+K +GVRL ++ N L++T ++ +E+A
Sbjct: 246 DRVIPRGGDKVVIAERGELRQVLSRTAILSNEKYRGVRLNLEENNLRVTANNPEQEEA 303
>gi|81251046|gb|ABB69856.1| DNA polymerase III beta chain [Nitrosospira sp. 9SS1]
Length = 369
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 128/299 (42%), Positives = 200/299 (66%), Gaps = 2/299 (0%)
Query: 4 VVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA-VG 62
++ +++ +L PLQ V IVE+++ LPILSN+L+ + E ISF++TD E+QITT T G
Sbjct: 3 LIEADRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTSTTDGG 62
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ ++ VAA+K DILR+LPE +VT+ + + K+GKS+F LQTL A+++P
Sbjct: 63 KADEEYSVTVAAKKLQDILRALPEKMRVTLETSDSRLQAKAGKSRFNLQTLPAEDFPKFP 122
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+++ T+ QK LK +L+MV +++A QDIRYYLNGLLL + + V++DGHRL +
Sbjct: 123 ESNEKQGTVTVQQKELKHLLSMVQYAMAHQDIRYYLNGLLLLLENNQLKVVATDGHRLAF 182
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+ ++ ++I+PRK V L RLL E PV +++ NQ++ FSN+ ++SK++D
Sbjct: 183 ALMMLETSLER-KEVILPRKVVLELSRLLNETEEPVTIEVLQNQVRFTFSNVVLVSKVVD 241
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF DY VI Y+K F +NR LL++LQR +I+SN+K +GVRL++ N L+I ++S
Sbjct: 242 GKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTANNLRIVCNNS 300
>gi|81251054|gb|ABB69862.1| DNA polymerase III beta chain [Nitrosospira sp. KAN8]
Length = 369
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 128/299 (42%), Positives = 201/299 (67%), Gaps = 2/299 (0%)
Query: 4 VVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAV-G 62
++ T+++ +L PLQ V IVE+++ LPILSN+L+ + E ISF++TD E+QITTYT G
Sbjct: 3 LIETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTYTTDDG 62
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ ++ VAA+K DILR+LPE +VT+ + + K+GKS+F LQTL A+++P
Sbjct: 63 KADEEYSVTVAAKKLQDILRALPEKMQVTLETSDNRLQAKAGKSRFNLQTLPAEDFPKFP 122
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+++ + QK LK +L+MV +++A QDIRYYLNGLLL + + V++DGHRL +
Sbjct: 123 ESNEPQGTVKVQQKELKHLLSMVQYAMAHQDIRYYLNGLLLLLENNQLKVVATDGHRLAF 182
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+ ++ ++I+PRK V L RLL E PV +++ NQ++ FSN+ ++SK++D
Sbjct: 183 ALMMLETPLEK-KEVILPRKVVLELSRLLNETEEPVTIEVLQNQVRFTFSNVVLVSKVVD 241
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF DY VI Y+K F +NR LL++LQR +I+SN+K +GVRL++ + L+I ++S
Sbjct: 242 GKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTTDNLRIVCNNS 300
>gi|329118145|ref|ZP_08246857.1| DNA-directed DNA polymerase III beta subunit [Neisseria
bacilliformis ATCC BAA-1200]
gi|327465805|gb|EGF12078.1| DNA-directed DNA polymerase III beta subunit [Neisseria
bacilliformis ATCC BAA-1200]
Length = 367
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 115/299 (38%), Positives = 184/299 (61%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ +++++L PLQ V IVE+++ LPILSN+L+ + + L+TD E+QI T
Sbjct: 2 LILQADRDSLLKPLQAVTGIVERRHTLPILSNVLIENTHGQTNILATDLEIQINTAGPDS 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
I A+K DILR+LPE V + + +K+GKS+F LQTL A+++P+M+
Sbjct: 62 EA-GDFRITTNAKKLQDILRALPEGALVALDWAQNRLTLKAGKSRFALQTLPAEDFPLMS 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ + F+L Q TLK +L V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 VGEEIGSAFSLPQDTLKTMLAQVQYSMAVQDIRYYLNGLLMQTEGGQLRLVATDGHRLAY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
I+ +++I+PRKTV L +LL + V +++ NQ++ + I+SK++D
Sbjct: 181 SAAAIEADLPK-AEVILPRKTVLELFKLLNRPDEQVSVELLENQVRFRCNGSVIVSKVVD 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF DY VI +K FL+NR L +L+R +I++N+K +G RL ++P L + S++
Sbjct: 240 GKFPDYNRVIPLDNDKIFLLNRAAFLGALERAAILANEKFRGARLHLQPGLLSVVCSNN 298
>gi|81251077|gb|ABB69879.1| DNA polymerase III beta chain [Nitrosospira sp. TYM9]
Length = 369
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 126/299 (42%), Positives = 195/299 (65%), Gaps = 2/299 (0%)
Query: 4 VVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA-VG 62
++ T+++ +L PLQ V IVE+++ LPILSN+L+ + EKISF++TD E+QITT
Sbjct: 3 LIETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKREKISFIATDLEIQITTSVEDAN 62
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
++ V A+K DILR+LP+ +VT+ + K+GKS+F LQTL +++P
Sbjct: 63 PAGEERSVTVPAKKLQDILRALPDKVQVTLETGENRLHAKAGKSRFNLQTLPVEDFPKFP 122
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+++ + T+ QK LK IL+MV +++AQQDIR YLNGLLL + + V++DGHRL +
Sbjct: 123 ESTEPQAKITVQQKELKHILSMVQYAMAQQDIRCYLNGLLLLMEDSYLKVVATDGHRLAF 182
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+ + ++I+PRK V L RLL + + PV ++ NQ++ FSN+ ++SK++D
Sbjct: 183 ALMLLAAP-QEKKEVILPRKVVLELSRLLNDVDEPVTMEFLQNQVRFTFSNVILVSKVVD 241
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF DY VI YEK F +NR LL++LQR SI+SN+K +GVRL++ L+I ++S
Sbjct: 242 GKFPDYNRVIPEGYEKQFDINRLLLLQTLQRASILSNEKFRGVRLILTSGNLRIVCNNS 300
>gi|372272368|ref|ZP_09508416.1| DNA polymerase III subunit beta [Marinobacterium stanieri S30]
Length = 368
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/310 (37%), Positives = 184/310 (59%), Gaps = 4/310 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+LV++ E A++ PLQ+V +VE++ LP+LSNIL+ E+++ TD EV++
Sbjct: 1 MRLVISRE--ALIKPLQLVAGVVERRQTLPVLSNILLVAEGEQLALTGTDLEVELVGRVQ 58
Query: 61 VGYGNSSIN-IIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP 119
+ + + V ARK +DI +SL + ++ + + + M IKSG+S+F+L TL A E+P
Sbjct: 59 LDEPVAEAGSVTVPARKLMDICKSLADDARIELELSGQKMMIKSGRSRFSLSTLPAHEFP 118
Query: 120 IMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+ +S FE L Q L+ ++ FS+AQQD+RYYLNG+LL + + +V++DGHR
Sbjct: 119 NVE-DSPETFELELPQSALRRLIEQTGFSMAQQDVRYYLNGMLLEVKDGELRSVATDGHR 177
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L + +S II+PRK + L RLL+ + V L I N I+ + SK
Sbjct: 178 LATAVNTVQTDTASQQQIIVPRKGILELARLLQGGDEHVRLVIGANHIRANVGDFTFTSK 237
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
L+DGKF DY+ VI +K L +R +L + RI+I+SN+K +GVRL + YL++ +
Sbjct: 238 LVDGKFPDYQRVIPRNGDKELLGDRQELRQVFSRIAILSNEKYRGVRLTLNNGYLQVMAN 297
Query: 300 SSNREKASST 309
+ +E+A T
Sbjct: 298 NPEQEEAEET 307
>gi|81251058|gb|ABB69865.1| DNA polymerase III beta chain [Nitrosospira sp. TCH711]
Length = 369
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 127/299 (42%), Positives = 200/299 (66%), Gaps = 2/299 (0%)
Query: 4 VVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITT-YTAVG 62
++ T+++ +L PLQ V IVE+++ LPILSN+L+ + E ISF++TD E+QITT T G
Sbjct: 3 LIETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTSATDGG 62
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ ++ VAA+K DILR+LPE +VT+ + + +K+GKS+F LQTL A+++P
Sbjct: 63 KADEEYSVTVAAKKLQDILRALPERMQVTLETSDSRLQVKAGKSRFNLQTLPAEDFPKFP 122
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+++ + QK LK +L+MV +++A QDIRYYLNGLLL + + V++DGHRL +
Sbjct: 123 ESNEPQGTVKVQQKELKHLLSMVQYAMAHQDIRYYLNGLLLLLENNQLKVVATDGHRLAF 182
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+ ++ ++I+PRK V L RLL E PV +++ NQ++ FSN+ ++SK++D
Sbjct: 183 ALMMLETPLEK-KEVILPRKVVLELARLLNETEEPVTIEVLQNQVRFTFSNVILVSKVVD 241
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF DY VI Y+K F +NR LL++LQR +I+SN+K +GVRL++ L+I ++S
Sbjct: 242 GKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTTGNLRIVCNNS 300
>gi|81251065|gb|ABB69870.1| DNA polymerase III beta chain [Nitrosospira sp. PJA1]
Length = 369
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 126/299 (42%), Positives = 199/299 (66%), Gaps = 2/299 (0%)
Query: 4 VVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA-VG 62
++ +++ +L PLQ V IVE+++ LPILSN+L+ + E ISF++ D E+QITTYT G
Sbjct: 3 LIEADRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIAPDLEIQITTYTTDGG 62
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ ++ VAA+K DILR+LPE +VT+ + + K+GKS+F LQTL A+++P
Sbjct: 63 KADEEYSVTVAAKKLQDILRALPEKVQVTLETSDNRLQAKAGKSRFNLQTLPAEDFPKFP 122
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+++ + QK LK +L+MV +++A QDIRYYLNGLLL + + V++DGHRL +
Sbjct: 123 ESNEPQGTVKIQQKELKHLLSMVQYAMAHQDIRYYLNGLLLLLENNQLKVVATDGHRLAF 182
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+ ++ ++I+PRK V L RLL E PV +++ NQ++ FSN+ ++SK++D
Sbjct: 183 ALIMLETPLEK-KEVILPRKVVLELSRLLNETEEPVTIEVLQNQVRFTFSNVVLVSKVVD 241
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF DY VI Y+K F +NR LL++LQR +I+SN+K +GVRL++ + L+I ++S
Sbjct: 242 GKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTTDNLRIVCNNS 300
>gi|81251062|gb|ABB69868.1| DNA polymerase III beta chain [Nitrosospira sp. TCH716]
Length = 369
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 127/299 (42%), Positives = 200/299 (66%), Gaps = 2/299 (0%)
Query: 4 VVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITT-YTAVG 62
++ T+++ +L PLQ V IVE+++ LPILSN+L+ + E ISF++TD E+QITT T G
Sbjct: 3 LIETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTSATDGG 62
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ ++ VAA+K DILR+LPE +VT+ + + +K+GKS+F LQTL A+++P
Sbjct: 63 KADEEYSVTVAAKKLQDILRALPERVQVTLETSDSRLQVKAGKSRFNLQTLPAEDFPKFP 122
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+++ + QK LK +L+MV +++A QDIRYYLNGLLL + + V++DGHRL +
Sbjct: 123 ESNEPQGTVKVQQKELKHLLSMVQYAMAHQDIRYYLNGLLLLLENNQLKVVATDGHRLAF 182
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+ ++ ++I+PRK V L RLL E PV +++ NQ++ FSN+ ++SK++D
Sbjct: 183 ALMMLETPLEK-KEVILPRKVVLELARLLNETEEPVTIEVLQNQVRFTFSNVILVSKVVD 241
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF DY VI Y+K F +NR LL++LQR +I+SN+K +GVRL++ L+I ++S
Sbjct: 242 GKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTTGNLRIVCNNS 300
>gi|442771354|gb|AGC72043.1| DNA polymerase III beta subunit [uncultured bacterium A1Q1_fos_500]
Length = 369
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 109/296 (36%), Positives = 191/296 (64%), Gaps = 2/296 (0%)
Query: 12 ILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINII 71
IL LQ VI IV++++ +PIL+N+L+ ++ ++D E+QI T +G ++ + I
Sbjct: 11 ILAALQSVIGIVDRRHNMPILANVLIQNKEGRVQLTTSDLEIQIQNATDLGGSDAHMGIT 70
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARK ++ILR+LP + V++ +++ + K GKS+FTLQ+L A+++P++ + ++ +F
Sbjct: 71 VGARKLLEILRTLPADQTVSLEQQDEKLVFKGGKSRFTLQSLPAQDFPLVQESPQFGPQF 130
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+ Q+ K +L V F++A QDIRYYLNG+L + + + V++DGHRL + +D
Sbjct: 131 AVPQRIFKGLLEQVAFAMAVQDIRYYLNGMLFVAEGQKLSVVATDGHRLAFASAQLDVDV 190
Query: 192 SSCSDIIIPRKTVFTLQRLLENKEN-PVELKISNNQIKIIFSNIEIISKLIDGKFLDYKY 250
++I+PRKTV LQRLL ++E ++++ +NNQ + + + +SKL++GKF DY
Sbjct: 191 PK-QEVILPRKTVLELQRLLSDQEGQDIQIQFANNQARFVMGAMTFVSKLVEGKFPDYNR 249
Query: 251 VISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
VI ++ S ++ R LL +LQR +I++ +K KGVRL + P L ++ +S +E+A
Sbjct: 250 VIPRNHKNSIVLGRAPLLATLQRTAIMTTEKFKGVRLQLSPGLLSLSSHNSEQEEA 305
>gi|81251050|gb|ABB69859.1| DNA polymerase III beta chain [Nitrosospira sp. HBN8222A]
Length = 369
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 127/299 (42%), Positives = 200/299 (66%), Gaps = 2/299 (0%)
Query: 4 VVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITT-YTAVG 62
++ T+++ +L PLQ V IVE+++ LPILSN+L+ + E ISF++TD E+QITT T G
Sbjct: 3 LIETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTSATDGG 62
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ ++ VAA+K DILR+LPE +VT+ + + K+GKS+F LQTL A+++P
Sbjct: 63 KADEEYSVTVAAKKLQDILRALPEKVQVTLETSDSRLQAKAGKSRFNLQTLPAEDFPKFP 122
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+++ + QK LK +L+MV +++A QDIRYYLNGLLL + + V++DGHRL +
Sbjct: 123 ESNEPQGTVKVQQKELKHLLSMVQYAMAHQDIRYYLNGLLLLLENNQLKVVATDGHRLAF 182
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+ ++ ++I+PRK V L RLL E PV +++ NQ++ FSN+ ++SK++D
Sbjct: 183 ALMMLETPLEK-KEVILPRKVVLELARLLNETEEPVTIEVLQNQVRFTFSNVILVSKVVD 241
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF DY VI Y+K F +NR LL++LQR +I+SN+K +GVRL++ + L+I ++S
Sbjct: 242 GKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTTDNLRIVCNNS 300
>gi|120552946|ref|YP_957297.1| DNA polymerase III subunit beta [Marinobacter aquaeolei VT8]
gi|120322795|gb|ABM17110.1| DNA polymerase III, beta subunit [Marinobacter aquaeolei VT8]
Length = 367
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/309 (35%), Positives = 182/309 (58%), Gaps = 3/309 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L ++ E +++ PLQ + +VEKK +P+LSN+L+ ++ T+ EV++ A
Sbjct: 1 MKLTISRE--SLITPLQSIAGVVEKKQTMPVLSNVLLEAEDNTLTLTGTNMEVELVARVA 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + I V ARK DI R+L + + + +E + ++SG S FTL TL A+ +P
Sbjct: 59 PVHVDQPGRITVPARKLADICRALGDEAPIDLALEGDRLHLRSGNSHFTLSTLPAEHFPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + F L QK L +L+ F++AQQD+RYYLNGLLL + V++DGHRL
Sbjct: 119 VE-DEPESFRLALPQKELGRMLDATAFAMAQQDVRYYLNGLLLEVDVNHARVVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
Q+++D +I+PRK V L RLL+++E+PV L I +N ++ + SKL
Sbjct: 178 AMAQLDLDTGCPELRQVIVPRKGVLELARLLDDEESPVTLVIGDNHLRATVGSYTFTSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
I+GKF DY VI +K+ L +R+ L +LQR I+S++ ++GVRL + PN L++ ++
Sbjct: 238 IEGKFPDYNRVIPRGGDKTVLADRSTLKSTLQRAGILSHENIRGVRLNLSPNQLQVFANN 297
Query: 301 SNREKASST 309
++E+A
Sbjct: 298 PDQEQAEDA 306
>gi|406902504|gb|EKD44882.1| hypothetical protein ACD_70C00187G0002 [uncultured bacterium]
Length = 368
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 124/295 (42%), Positives = 186/295 (63%), Gaps = 3/295 (1%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG-YGNS 66
+K IL PLQ+VI IVE+K LPILSN+L+ KI F +TD E+QITT G G
Sbjct: 7 DKEVILKPLQVVIGIVERKQTLPILSNVLIENQDGKIRFTTTDLEIQITTSIDTGITGGQ 66
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSK 126
S V +K +IL+ LPE K++I + + IK+ KS+F+LQTL A ++P+++ +
Sbjct: 67 SAAFTVGGKKLQEILKVLPELSKISIETKENKVQIKTNKSRFSLQTLPALDFPMLSNQLE 126
Query: 127 YDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVN 186
+ L+QK LK +L V +++AQQD+RYYLNG+LL + AV++DGHRL Y +
Sbjct: 127 NSKKIVLAQKDLKNLLLSVQYAMAQQDVRYYLNGVLLIVDGNKLKAVATDGHRLA-YNAD 185
Query: 187 IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFL 246
+ + +II+PRK V L +LL + E ++L+ S Q+K FS I +I+K+I+GKF
Sbjct: 186 VIEGHHEKQEIILPRKAVTELSKLLADSEESIDLEFSQQQVKATFSGITLITKIIEGKFP 245
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DY+ VI KY+ + + R + ++LQR +I+SN+K +GVR V+ L I S+S
Sbjct: 246 DYERVIP-KYDNNLNMERTVMQQALQRAAILSNEKFRGVRFVLTEKNLSIISSNS 299
>gi|293393722|ref|ZP_06638030.1| DNA-directed DNA polymerase III beta subunit [Serratia odorifera
DSM 4582]
gi|291423766|gb|EFE96987.1| DNA-directed DNA polymerase III beta subunit [Serratia odorifera
DSM 4582]
Length = 366
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 184/308 (59%), Gaps = 3/308 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ A+ + +
Sbjct: 6 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALSQPHEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++T+ ++ + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEITVQLDGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCAMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
++ S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQQLPSHS-VIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKAS 307
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSHNQLKITANNPEQEEAE 303
Query: 308 ST-DLIYH 314
D+IY
Sbjct: 304 EILDVIYE 311
>gi|85057980|ref|YP_453682.1| DNA polymerase III subunit beta [Sodalis glossinidius str.
'morsitans']
gi|84778500|dbj|BAE73277.1| DNA polymerase III beta subunit protein DnaN [Sodalis glossinidius
str. 'morsitans']
Length = 366
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 184/308 (59%), Gaps = 3/308 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + +++ TD E+++ A+ +
Sbjct: 6 EREQLLKPLQQVSSPLGGRPTLPILGNLLLQVSEDRLLLTGTDLEMEMVAQVALSAAHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M I+SG+S+++L TL A +P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVTLEGERMLIRSGRSRYSLSTLPASNFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTLSQ LK ++ FS+A QD+RYYLNG+L + + + V++DGHRL +++
Sbjct: 125 EVEFTLSQSILKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCAMSV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ ENPV+L+I +N I+ + SKL+DG+F D
Sbjct: 185 GEALPSHS-VIVPRKGVMELVRMLDGGENPVKLQIGSNNIRASVGDYIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKAS 307
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDVLKQAFARAAILSNEKFRGVRLYLSANQLKITANNPEQEEAE 303
Query: 308 ST-DLIYH 314
D+ Y
Sbjct: 304 EILDVTYQ 311
>gi|294138803|ref|YP_003554781.1| DNA polymerase III subunit beta [Shewanella violacea DSS12]
gi|293325272|dbj|BAJ00003.1| DNA polymerase III, beta subunit [Shewanella violacea DSS12]
Length = 366
Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 117/300 (39%), Positives = 187/300 (62%), Gaps = 4/300 (1%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
+++A+L PLQ+V VE+++ LPIL+N+LV + + TD EV++ +
Sbjct: 6 DRDALLKPLQLVNGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGQVQLEGDVVE 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP-IMTLNSK 126
I V A+KF+DI++SLP+ ++ I + + ++SG+S+FTL TL A+EYP + S
Sbjct: 66 GRITVPAKKFLDIVKSLPDQVELKIEQQENRLLLRSGRSRFTLATLPAEEYPNVEAFQS- 124
Query: 127 YDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVN 186
D EFT+ Q TLK +++ FS+A QD+RYYLNGLLL + A+++DGHRL
Sbjct: 125 -DIEFTIKQGTLKSLIDATQFSMANQDVRYYLNGLLLETDGNVLRAIATDGHRLALSHRQ 183
Query: 187 IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFL 246
I+ +I+PRK V LQRL E ++ V + I +N I+ S+ + SKL+DG+F
Sbjct: 184 IEATLPE-KQVIVPRKGVVELQRLFEGEDLDVTIAIGDNAIRATTSSAVLTSKLVDGRFP 242
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
DY+ V+ +K + +RN+L ++L R SI+SN+K +GVR+ ++ N LKIT ++ +E+A
Sbjct: 243 DYRRVLPKGGDKVVIASRNQLKQALLRASILSNEKFRGVRVQLENNLLKITANNPEQEEA 302
>gi|307543591|ref|YP_003896070.1| DNA polymerase III subunit beta [Halomonas elongata DSM 2581]
gi|307215615|emb|CBV40885.1| DNA polymerase III subunit beta [Halomonas elongata DSM 2581]
Length = 367
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 181/298 (60%), Gaps = 1/298 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ A+L PL +V +VE++ LP+LSN+L+ +++S TD EV++ T + +
Sbjct: 7 REALLRPLTLVAGVVERRQTLPVLSNVLIQVEQDQVSLTGTDLEVELIGRTVASQVDEAG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
+ V ARK +DI +SLP+ ++ + +E+ ++SG+S+FTL TL E+P + + +
Sbjct: 67 SATVPARKLMDICKSLPDQAEIQLALEDNRAVLRSGRSRFTLSTLPVAEFPNIE-DGQSS 125
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
E +L + TLK +++ F++AQQD+RYYLNG+LL F + AV++DGHRL + +
Sbjct: 126 VELSLPRGTLKRLIDATSFAMAQQDVRYYLNGMLLEFGTNLVRAVATDGHRLAVASRSAE 185
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ +I+PRK + L RLL++ E+PV L + + I+ + SKL+DGKF DY
Sbjct: 186 IQVEPSQKLIVPRKGIMELVRLLDDGEDPVSLTLGSTHIRAHTGDFTFTSKLVDGKFPDY 245
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ V+ +K + R +L + L R +I+SN+K +GVRL ++ L++ ++ +E+A
Sbjct: 246 ERVVPKGGDKVLIAERTELRQVLSRTAILSNEKYRGVRLNLEEGNLRVMANNPEQEEA 303
>gi|82701137|ref|YP_410703.1| DNA polymerase III subunit beta [Nitrosospira multiformis ATCC
25196]
gi|81251042|gb|ABB69853.1| DNA polymerase III beta chain [Nitrosospira multiformis]
gi|82409202|gb|ABB73311.1| DNA polymerase III, beta subunit [Nitrosospira multiformis ATCC
25196]
Length = 369
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 126/299 (42%), Positives = 198/299 (66%), Gaps = 2/299 (0%)
Query: 4 VVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGY 63
++ +++ +L PLQ V IVE+++ LPILSN+L+ + E ISF++TD E+QITT T G
Sbjct: 3 LIEADRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTSTTDGG 62
Query: 64 G-NSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
++ VAA+K DILR+LPE +VT+ + + K+GKS+F LQTL A+++P
Sbjct: 63 KVREEYSVTVAAKKLQDILRALPEKMRVTLETNDSRLQAKAGKSRFNLQTLPAEDFPKFP 122
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+++ + QK LK +L MV +++A QDIRYYLNGLLL + + V++DGHRL +
Sbjct: 123 ESNETQGTVKVQQKELKHLLAMVQYAMAHQDIRYYLNGLLLLLENNQLKVVATDGHRLAF 182
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+ ++ ++I+PRK V L RLL E+PV +++ NQ++ FSN+ ++SK++D
Sbjct: 183 ALMMLETSLER-KEVILPRKVVLELSRLLNETEDPVTIEVLQNQVRFTFSNVVLVSKVVD 241
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF DY VI Y+K F +NR LL++LQR +I+SN+K +GVRL++ + L+I ++S
Sbjct: 242 GKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTADNLRIVCNNS 300
>gi|387812452|ref|YP_005427929.1| DNA polymerase III subunit beta [Marinobacter hydrocarbonoclasticus
ATCC 49840]
gi|381337459|emb|CCG93506.1| DNA polymerase III, beta subunit [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 367
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 110/309 (35%), Positives = 181/309 (58%), Gaps = 3/309 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L ++ E +++ PLQ + +VEKK +P+LSN+L+ ++ T+ EV++ A
Sbjct: 1 MKLTISRE--SLITPLQSIAGVVEKKQTMPVLSNVLLEAEDNTLTLTGTNMEVELVARVA 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + I V ARK DI R+L + + + +E + +++G S FTL TL A+ +P
Sbjct: 59 PVHVDQPGRITVPARKLADICRALGDEAPIDLALEGDRLHLRAGNSHFTLSTLPAEHFPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + F L QK L +L+ F++AQQD+RYYLNGLLL + V++DGHRL
Sbjct: 119 VE-DEPESFRLALPQKELGRMLDATAFAMAQQDVRYYLNGLLLEVDVNHARVVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
Q ++D +I+PRK V L RLL+++E+PV L I +N ++ + SKL
Sbjct: 178 AMAQFDLDTGCPELRQVIVPRKGVLELARLLDDEESPVTLVIGDNHLRATVGSYTFTSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
I+GKF DY VI +K+ L +R+ L +LQR I+S++ ++GVRL + PN L++ ++
Sbjct: 238 IEGKFPDYNRVIPRGGDKTVLADRSTLKSTLQRAGILSHENIRGVRLNLSPNQLQVFANN 297
Query: 301 SNREKASST 309
++E+A
Sbjct: 298 PDQEQAEDA 306
>gi|399908139|ref|ZP_10776691.1| DNA polymerase III subunit beta [Halomonas sp. KM-1]
Length = 367
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 106/288 (36%), Positives = 175/288 (60%), Gaps = 1/288 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ A+L PL +V +VE++ LP+LSN+L+ + E+++ TD EV++ TA
Sbjct: 7 REALLRPLALVAGVVERRQTLPVLSNVLIQVDQEQVALTGTDLEVELIGRTAASQVEVPG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
I V ARK +DI +SLP+ ++ +E+ ++SG+S+FTL TL E+P + +S D
Sbjct: 67 AITVPARKLMDICKSLPDQAELQFSLEDGRAVLRSGRSRFTLSTLPVAEFPNIE-DSAGD 125
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
E +L + TLK +++ F++AQQD+RYYLNG+LL + + V++DGHRL + +
Sbjct: 126 VELSLPRGTLKHLIDATSFAMAQQDVRYYLNGMLLELRAGLVRTVATDGHRLAVCSRSAE 185
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ +I+PRK V L RLL++ + PV L +S + ++ + SKL+DGKF DY
Sbjct: 186 IQVEPARKLIVPRKGVLELVRLLDDSDEPVTLTLSASHVRAHTGDFTFTSKLVDGKFPDY 245
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
+ V+ +K F+ R +L + L R SI+SN+K +GVRL ++ L++
Sbjct: 246 ERVVPRGGDKVFIAERAELRQVLSRTSILSNEKYRGVRLHLQEGNLQV 293
>gi|410665004|ref|YP_006917375.1| DNA polymerase III subunit beta [Simiduia agarivorans SA1 = DSM
21679]
gi|409027361|gb|AFU99645.1| DNA polymerase III subunit beta [Simiduia agarivorans SA1 = DSM
21679]
Length = 367
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 107/301 (35%), Positives = 178/301 (59%), Gaps = 1/301 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
++A+L PLQ+V +VE++ LP+LSN+L+ + EK+S TD EV+I + + S
Sbjct: 7 RDALLKPLQLVAGVVERRQTLPVLSNVLIVLDGEKLSLTGTDLEVEIVGRIQLEHPGDSG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
I V ARK +DI RSLP+ + +N+ + +KSG+S+FTL TL A ++P + + D
Sbjct: 67 EITVPARKLLDICRSLPDGADIEFKEDNQKLMVKSGRSRFTLSTLPANDFPNVE-DGPSD 125
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
FT QK +K +++ F++AQQD+RYYLNG+L + V++DGHRL ++
Sbjct: 126 LSFTCPQKDIKRLIDSTSFAMAQQDVRYYLNGMLWEVTSGQLRVVATDGHRLAMCTRTME 185
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ + I+PRK V L RLL + + E+ + N ++ + ++ SKL+DGKF DY
Sbjct: 186 IQSAEKVQAILPRKGVIELARLLSDGDQTAEVVLGANHVRAVTTDFTFTSKLVDGKFPDY 245
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASS 308
+ V+ + + R +L ++ R +I+SN+K +GVRL ++ L I ++ +E+A
Sbjct: 246 ERVLPKGGSRVIIGVREELKQAFGRTAILSNEKYRGVRLQLEAGQLTIVANNPEQEEAEE 305
Query: 309 T 309
T
Sbjct: 306 T 306
>gi|422807753|ref|ZP_16856182.1| DNA polymerase III [Escherichia fergusonii B253]
gi|324111598|gb|EGC05579.1| DNA polymerase III [Escherichia fergusonii B253]
Length = 366
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 177/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ + +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVHPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ +NP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|448746079|ref|ZP_21727749.1| DNA polymerase III, beta chain [Halomonas titanicae BH1]
gi|445566807|gb|ELY22913.1| DNA polymerase III, beta chain [Halomonas titanicae BH1]
Length = 368
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 178/298 (59%), Gaps = 1/298 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ A+L PL +V +VE++ LP+LSN+L+ +++S TD EV++ T + +
Sbjct: 8 REALLRPLTLVAGVVERRQTLPVLSNVLIQVEGDQVSLTGTDLEVELVGRTVASQVDQAG 67
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
+ V ARK +DI +SLP+ + + +E ++SG+S+FTL TL E+P + ++
Sbjct: 68 SATVPARKLMDICKSLPDQSDIQLAVEEGRAVLRSGRSRFTLSTLPVAEFPNIE-DADGS 126
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
E ++ + TLK ++ F++AQQD+RYYLNG+LL Q + V++DGHRL I+
Sbjct: 127 QEISVPRGTLKHLIEATSFAMAQQDVRYYLNGMLLEIQSNLLRTVATDGHRLAMCSRPIE 186
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
S +I+PRK + L RLL++ + PV L + ++ ++ + SKLIDGKF DY
Sbjct: 187 VSVSQSQKLIVPRKGILELSRLLDDSDEPVSLTLGSSHVRAHTGDFTFTSKLIDGKFPDY 246
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ V+ +K + R +L + L R +I+SN+K +GVRL ++ N LK+ ++ +E+A
Sbjct: 247 ERVVPRNGDKVLIAERAELRQVLSRTAILSNEKYRGVRLYLEENNLKVMANNPEQEEA 304
>gi|254490238|ref|ZP_05103428.1| DNA polymerase III, beta subunit [Methylophaga thiooxidans DMS010]
gi|224464585|gb|EEF80844.1| DNA polymerase III, beta subunit [Methylophaga thiooxydans DMS010]
Length = 367
Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 188/306 (61%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ V+ E I+ PLQ+V SIVE++ LPILSN+L+ + ++S STD E+++
Sbjct: 1 MQFTVSQE--TIVRPLQLVCSIVERRATLPILSNVLLRVHGNQLSMTSTDMELEMIATLP 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
V I V+ARKF+DI+R+LP +++ ++ +K+GKS+F+L TL + ++P
Sbjct: 59 VSVEEEG-KITVSARKFLDIVRALPGNATISLNAKDNKAVVKAGKSRFSLSTLPSDDFPD 117
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + Y E +L Q LK +L+ F++A QD+RYYLNGLLL ++ + AV++DGHRL
Sbjct: 118 -SEGANYIDEISLPQSALKSLLDETSFAMASQDVRYYLNGLLLEREETTLRAVATDGHRL 176
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + + +I+PRK + L RLL ++ V+L SN QIK+ +I SKL
Sbjct: 177 AMGSLTTANPVAEKNSVIVPRKAIIELGRLLNETDDDVKLAFSNQQIKVELPDIHFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F +Y+ V+ +K L R++L ++L R +I+SNDK + VR+ + + LK TV++
Sbjct: 237 IDGQFPNYERVLPLGGDKEVLAERDELKQALSRAAILSNDKHRSVRINLDTDQLKATVTN 296
Query: 301 SNREKA 306
+E A
Sbjct: 297 QEQESA 302
>gi|383815550|ref|ZP_09970961.1| DNA polymerase III subunit beta [Serratia sp. M24T3]
gi|383295582|gb|EIC83905.1| DNA polymerase III subunit beta [Serratia sp. M24T3]
Length = 366
Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 178/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGALLLTGTDLEMEMVAKVALSQPHDV 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++T+ +E+ M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEITVVLESDRMLVRSGRSRFSLSTLPATDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQTLPSHS-VIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLQAGCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITANNPEQEEA 302
>gi|381402016|ref|ZP_09926903.1| DNA polymerase III subunit beta [Kingella kingae PYKK081]
gi|380832993|gb|EIC12874.1| DNA polymerase III subunit beta [Kingella kingae PYKK081]
Length = 368
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 113/299 (37%), Positives = 189/299 (63%), Gaps = 2/299 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ T+++ +L P+Q V IVE+K+ LPIL+N+L+ ++ KI L+TD E+QI T A
Sbjct: 2 LILETQRDNLLKPIQAVTGIVERKHTLPILANVLLESHAGKIRVLATDLEIQIHTQGAES 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ + A+K DIL++LP++ V + + + +KSGKS+F LQTL A+++P M
Sbjct: 62 E-HGDFRLTTNAKKLQDILKALPDSANVQLDWADHRLTLKSGKSRFNLQTLPAEDFPTMN 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ F L Q+TLK +++ V +S+A QDIR+YLNGLLL + + V++DGHRL +
Sbjct: 121 VGDTTTAAFALPQETLKHMISQVQYSMAVQDIRFYLNGLLLQVEGNQLRLVATDGHRLAF 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
ID S D+I+PRKTV +LL + V +++ + Q+++ ++ ++SK+ID
Sbjct: 181 ASTTIDTDLSK-QDVILPRKTVLEWNKLLNQPKENVIIELLDKQVRLRCNDTVVVSKVID 239
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
GKF DY VI + ++NR LL +L+R SI++N+K +GVRL + L+++ +++
Sbjct: 240 GKFPDYNRVIPMDNNRIVVLNRLALLGALERSSILANEKFRGVRLQLSAGSLRVSCTNN 298
>gi|335892423|pdb|3QSB|B Chain B, Structure Of E. Coli Poliiibeta With
(Z)-5-(1-((4'-Fluorobiphenyl-4-
Yl)methoxyimino)butyl)-2,2-Dimethyl-4,
6-Dioxocyclohexanecarbonitrile
Length = 366
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ +NP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGXDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|308188764|ref|YP_003932895.1| DNA polymerase III beta-subunit [Pantoea vagans C9-1]
gi|308059274|gb|ADO11446.1| DNA polymerase III, beta-subunit [Pantoea vagans C9-1]
Length = 384
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 178/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ + TD E+++ A+ +
Sbjct: 24 EREQLLKPLQQVSGPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALTQAHEP 83
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ V ARKF+DI R LP+ ++T+ +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 84 GSTTVPARKFLDICRGLPDGAEITLALEGDRMLVRSGRSRFSLSTLPASDFPNLD-DWQS 142
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG++ + + + V++DGHRL + I
Sbjct: 143 EVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMMFETEGEELRTVATDGHRLAVCSMPI 202
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ ENP++++I + I+ + SKL+DG+F D
Sbjct: 203 GQALPSHS-VIVPRKGVIELLRLLDGGENPLQVQIGGSNIRAHVGDYIFTSKLVDGRFPD 261
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL I N LKIT ++ +E+A
Sbjct: 262 YRRVLPKNPDKALEAGCDLLKQAFARAAILSNEKFRGVRLYITENQLKITANNPEQEEA 320
>gi|417087599|ref|ZP_11954527.1| DNA polymerase III subunit beta [Escherichia coli cloneA_i1]
gi|355349699|gb|EHF98902.1| DNA polymerase III subunit beta [Escherichia coli cloneA_i1]
Length = 328
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ +NP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|417142138|ref|ZP_11984713.1| DNA polymerase III, beta subunit [Escherichia coli 97.0259]
gi|417310294|ref|ZP_12097110.1| DNA polymerase III subunit beta [Escherichia coli PCN033]
gi|432891271|ref|ZP_20104029.1| DNA polymerase III subunit beta [Escherichia coli KTE165]
gi|338768142|gb|EGP22946.1| DNA polymerase III subunit beta [Escherichia coli PCN033]
gi|386155162|gb|EIH11517.1| DNA polymerase III, beta subunit [Escherichia coli 97.0259]
gi|431430386|gb|ELH12218.1| DNA polymerase III subunit beta [Escherichia coli KTE165]
Length = 366
Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 177/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL ++I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMSI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ +NP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|333924897|ref|YP_004498476.1| DNA polymerase III subunit beta [Serratia sp. AS12]
gi|333929850|ref|YP_004503428.1| DNA polymerase III subunit beta [Serratia plymuthica AS9]
gi|386326721|ref|YP_006022891.1| DNA polymerase III subunit beta [Serratia sp. AS13]
gi|333471457|gb|AEF43167.1| DNA polymerase III, beta subunit [Serratia plymuthica AS9]
gi|333488957|gb|AEF48119.1| DNA polymerase III, beta subunit [Serratia sp. AS12]
gi|333959054|gb|AEG25827.1| DNA polymerase III, beta subunit [Serratia sp. AS13]
Length = 366
Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 180/299 (60%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ A+ + +
Sbjct: 6 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGCLLLTGTDLEMEMVARVALSQPHEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E++ M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVTLESERMLVRSGRSRFSLSTLPAVDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
++ S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQQLPSHS-VIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITANNPEQEEA 302
>gi|127510937|ref|YP_001092134.1| DNA polymerase III subunit beta [Shewanella loihica PV-4]
gi|126636232|gb|ABO21875.1| DNA polymerase III, beta subunit [Shewanella loihica PV-4]
Length = 366
Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 114/299 (38%), Positives = 183/299 (61%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
+++A+L PLQ+V VE+++ LPIL+N+LV + + TD EV++ +
Sbjct: 6 DRDALLKPLQLVSGAVERRHNLPILANLLVEVSGHSLKLTGTDLEVELVGQAELQGEVQE 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V A+KF+DI++SLP+ ++ I ++ + ++SG+S+FTL TL A+EYP + +
Sbjct: 66 GRTTVPAKKFLDIVKSLPDQVELKIEQQDNRLLLRSGRSRFTLATLPAEEYPNVDA-FQA 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
D EFTL Q TLK +++ FS+A QD+RYYLNGLLL + + A+++DGHRL +
Sbjct: 125 DIEFTLKQGTLKSLIDATQFSMANQDVRYYLNGLLLETEGNVLRAIATDGHRLALSHRMV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+I+PRK V LQRL E ++ V L I N I+ + SKL+DG+F D
Sbjct: 185 QDSLPE-KQVIVPRKGVLELQRLFEGEDLDVTLSIGENAIRATTQSAVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + +RN L ++L R SI+SN+K +GVR+ ++ N +KIT ++ +E+A
Sbjct: 244 YRRVLPKGGDKIVIASRNHLKQALLRASILSNEKFRGVRVQLEQNLIKITANNPEQEEA 302
>gi|251787654|ref|YP_003002375.1| DNA polymerase III subunit beta [Dickeya zeae Ech1591]
gi|247536275|gb|ACT04896.1| DNA polymerase III, beta subunit [Dickeya zeae Ech1591]
Length = 366
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 180/299 (60%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + ++S TD E+++ + A+ +
Sbjct: 6 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQVSEGRLSLTGTDLEMEMVAHLALTQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARK DI R LP+ ++T+ +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKLFDICRGLPDGAEITVTLEGDRMLVRSGRSRFSLSTLPATDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETGGEELRTVATDGHRLAVCAMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + + L ++ R +I+SN+K +GVRL + N L+IT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEASCDLLRQAFSRAAILSNEKFRGVRLYLNQNQLRITANNPEQEEA 302
>gi|300719140|ref|YP_003743943.1| DNA polymerase III subunit beta [Erwinia billingiae Eb661]
gi|299064976|emb|CAX62096.1| DNA polymerase III subunit beta [Erwinia billingiae Eb661]
Length = 366
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/307 (35%), Positives = 182/307 (59%), Gaps = 3/307 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ N + TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQVNEGSLLLTGTDLEMEMVARVALTQEHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++T+ ++ + M ++SG+S+F+L TL A ++P + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEITVMLDGERMLVRSGRSRFSLSTLPASDFPNLD-DWTS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
++ S S +I+PRK V L RLL+ + P++++I +N I+ + SKL+DG+F D
Sbjct: 185 GQQLPSHS-VIVPRKGVIELVRLLDGGDTPLQVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKAS 307
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLDAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAE 303
Query: 308 ST-DLIY 313
D+ Y
Sbjct: 304 EMLDVTY 310
>gi|424818488|ref|ZP_18243639.1| DNA polymerase III subunit beta [Escherichia fergusonii ECD227]
gi|325499508|gb|EGC97367.1| DNA polymerase III subunit beta [Escherichia fergusonii ECD227]
Length = 366
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GTTTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ +NP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|50123358|ref|YP_052525.1| DNA polymerase III subunit beta [Pectobacterium atrosepticum
SCRI1043]
gi|49613884|emb|CAG77336.1| DNA polymerase III, beta chain [Pectobacterium atrosepticum
SCRI1043]
Length = 366
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 111/306 (36%), Positives = 183/306 (59%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ +V E+ +L PLQ V S + + LPIL N+L+ +S TD E+++ A
Sbjct: 1 MKFIVERER--LLKPLQQVSSPLGGRPTLPILGNLLIQVTEGALSLTGTDLEMEMVAKVA 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + V ARK DI R LPE ++TI ++ M ++SG+S+F+L TL A ++P
Sbjct: 59 LTQPHEPGATTVPARKLFDICRGLPEGAEITIMLDGDRMLVRSGRSRFSLSTLPAADFPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + D EF+L Q T+K ++ FS+A QD+RYYLNG+L + +++ V++DGHRL
Sbjct: 119 LD-DWQSDVEFSLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEDLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ I + S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL
Sbjct: 178 AVCSMPIGQSLPSHS-VIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
+DG+F DY+ V+ +K+ + + L ++ R +I+SN+K +GVRL + N LKIT ++
Sbjct: 237 VDGRFPDYRRVLPKNPDKTLEASCDLLKQAFSRAAILSNEKFRGVRLHLIQNQLKITANN 296
Query: 301 SNREKA 306
+E+A
Sbjct: 297 PEQEEA 302
>gi|387609484|ref|YP_006098340.1| DNA polymerase III beta-subunit [Escherichia coli 042]
gi|284923784|emb|CBG36882.1| DNA polymerase III beta-subunit [Escherichia coli 042]
Length = 366
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQSHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ +NP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|253686411|ref|YP_003015601.1| DNA polymerase III subunit beta [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251752989|gb|ACT11065.1| DNA polymerase III, beta subunit [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 366
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/306 (35%), Positives = 183/306 (59%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ +V E+ +L PLQ V S + + LPIL N+L+ + +S TD E+++ A
Sbjct: 1 MKFIVERER--LLKPLQQVSSPLGGRPTLPILGNLLIQVTEDALSLTGTDLEMEMVAKVA 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + V ARK DI R LPE ++TI ++ M ++SG+S+F+L TL A ++P
Sbjct: 59 LTQPHEPGATTVPARKLFDICRGLPEGAEITIMLDGDRMLVRSGRSRFSLSTLPAADFPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + D EF+L Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL
Sbjct: 119 LD-DWQSDVEFSLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + + S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL
Sbjct: 178 AVCSMPVGQSLPSHS-VIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
+DG+F DY+ V+ +K+ + + L ++ R +I+SN+K +GVRL + N LKIT ++
Sbjct: 237 VDGRFPDYRRVLPKNPDKTLEASCDLLKQAFSRAAILSNEKFRGVRLHLIQNQLKITANN 296
Query: 301 SNREKA 306
+E+A
Sbjct: 297 PEQEEA 302
>gi|418942024|ref|ZP_13495325.1| DNA polymerase III subunit beta [Escherichia coli O157:H43 str.
T22]
gi|375322663|gb|EHS68407.1| DNA polymerase III subunit beta [Escherichia coli O157:H43 str.
T22]
Length = 366
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ +NP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|365812998|pdb|3Q4L|A Chain A, Structure Of A Small Peptide Ligand Bound To E.Coli Dna
Sliding Clamp
gi|365812999|pdb|3Q4L|B Chain B, Structure Of A Small Peptide Ligand Bound To E.Coli Dna
Sliding Clamp
Length = 368
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 8 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEP 67
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 68 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 126
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 127 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 186
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ +NP+ ++I +N I+ + SKL+DG+F D
Sbjct: 187 GQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 245
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 246 YRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 304
>gi|291612474|ref|YP_003522631.1| DNA polymerase III, subunit beta [Sideroxydans lithotrophicus ES-1]
gi|291582586|gb|ADE10244.1| DNA polymerase III, beta subunit [Sideroxydans lithotrophicus ES-1]
Length = 367
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 196/299 (65%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++N +L PLQ V+ IVE+K LPILSN+L+ K + + F++TD E+QI + +
Sbjct: 7 DRNELLKPLQAVVGIVERKQPLPILSNVLIKKTKDSVRFITTDLEIQIEAQLRATFDATE 66
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I ++A+K +ILR++P+ VT+ ++ + +K+ KS+F+LQTL A+++PI++
Sbjct: 67 SSITISAKKLQEILRAIPDNSMVTLDNQDNKLLVKANKSRFSLQTLPAQDFPILSEQLIG 126
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ + Q L+ +L+ V +++AQQDIRYYLNG+LL + I +++DGHRL + +
Sbjct: 127 ASKIEIEQGVLRRLLSSVQYAMAQQDIRYYLNGVLLVIDETTIKLIATDGHRLAFISEEL 186
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+K ++I+ RKTV L +LL + E+ V+L+++ Q++I F+++ + SK+IDGKF D
Sbjct: 187 KEKHQK-QEVILSRKTVNELLKLLADSEDKVQLELAEKQVRISFADVILTSKVIDGKFPD 245
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y VI + ++R +L++LQR +I+SN+K +GVRL++ L++ S+S +E+A
Sbjct: 246 YNRVIP-AHTNHLTLDRLTILQALQRAAILSNEKFRGVRLLLTEKNLRVISSNSEQEEA 303
>gi|15804295|ref|NP_290334.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str.
EDL933]
gi|15833890|ref|NP_312663.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str.
Sakai]
gi|16131569|ref|NP_418156.1| DNA polymerase III, beta subunit [Escherichia coli str. K-12
substr. MG1655]
gi|26250442|ref|NP_756482.1| DNA polymerase III subunit beta [Escherichia coli CFT073]
gi|74314015|ref|YP_312434.1| DNA polymerase III subunit beta [Shigella sonnei Ss046]
gi|82546035|ref|YP_409982.1| DNA polymerase III subunit beta [Shigella boydii Sb227]
gi|82779230|ref|YP_405579.1| DNA polymerase III subunit beta [Shigella dysenteriae Sd197]
gi|91213223|ref|YP_543209.1| DNA polymerase III subunit beta [Escherichia coli UTI89]
gi|110644044|ref|YP_671774.1| DNA polymerase III subunit beta [Escherichia coli 536]
gi|117625977|ref|YP_859300.1| DNA polymerase III subunit beta [Escherichia coli APEC O1]
gi|157156673|ref|YP_001465186.1| DNA polymerase III subunit beta [Escherichia coli E24377A]
gi|157163181|ref|YP_001460499.1| DNA polymerase III subunit beta [Escherichia coli HS]
gi|168748583|ref|ZP_02773605.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
EC4113]
gi|168753590|ref|ZP_02778597.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
EC4401]
gi|168759887|ref|ZP_02784894.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
EC4501]
gi|168766188|ref|ZP_02791195.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
EC4486]
gi|168772264|ref|ZP_02797271.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
EC4196]
gi|168779923|ref|ZP_02804930.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
EC4076]
gi|168798736|ref|ZP_02823743.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
EC508]
gi|170018063|ref|YP_001723017.1| DNA polymerase III subunit beta [Escherichia coli ATCC 8739]
gi|170083203|ref|YP_001732523.1| DNA polymerase III subunit beta [Escherichia coli str. K-12 substr.
DH10B]
gi|170682488|ref|YP_001746029.1| DNA polymerase III subunit beta [Escherichia coli SMS-3-5]
gi|187730327|ref|YP_001882465.1| DNA polymerase III subunit beta [Shigella boydii CDC 3083-94]
gi|188492542|ref|ZP_02999812.1| DNA polymerase III, beta subunit [Escherichia coli 53638]
gi|191165808|ref|ZP_03027646.1| DNA polymerase III, beta subunit [Escherichia coli B7A]
gi|191170441|ref|ZP_03031994.1| DNA polymerase III, beta subunit [Escherichia coli F11]
gi|193063787|ref|ZP_03044874.1| DNA polymerase III, beta subunit [Escherichia coli E22]
gi|194428142|ref|ZP_03060686.1| DNA polymerase III, beta subunit [Escherichia coli B171]
gi|194431323|ref|ZP_03063616.1| DNA polymerase III, beta subunit [Shigella dysenteriae 1012]
gi|194435912|ref|ZP_03068015.1| DNA polymerase III, beta subunit [Escherichia coli 101-1]
gi|195936322|ref|ZP_03081704.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str.
EC4024]
gi|208807282|ref|ZP_03249619.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
EC4206]
gi|208813217|ref|ZP_03254546.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
EC4045]
gi|208820496|ref|ZP_03260816.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
EC4042]
gi|209400437|ref|YP_002273227.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str.
EC4115]
gi|209921178|ref|YP_002295262.1| DNA polymerase III subunit beta [Escherichia coli SE11]
gi|217324148|ref|ZP_03440232.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
TW14588]
gi|218551231|ref|YP_002385023.1| DNA polymerase III subunit beta [Escherichia fergusonii ATCC 35469]
gi|218556266|ref|YP_002389180.1| DNA polymerase III subunit beta [Escherichia coli IAI1]
gi|218560776|ref|YP_002393689.1| DNA polymerase III subunit beta [Escherichia coli S88]
gi|218691989|ref|YP_002400201.1| DNA polymerase III subunit beta [Escherichia coli ED1a]
gi|218697423|ref|YP_002405090.1| DNA polymerase III subunit beta [Escherichia coli 55989]
gi|218702550|ref|YP_002410179.1| DNA polymerase III subunit beta [Escherichia coli IAI39]
gi|218707347|ref|YP_002414866.1| DNA polymerase III subunit beta [Escherichia coli UMN026]
gi|222158410|ref|YP_002558549.1| DNA polymerase III subunit beta [Escherichia coli LF82]
gi|227883922|ref|ZP_04001727.1| DNA-directed DNA polymerase [Escherichia coli 83972]
gi|237703501|ref|ZP_04533982.1| DNA polymerase III subunit beta [Escherichia sp. 3_2_53FAA]
gi|238902791|ref|YP_002928587.1| DNA polymerase III subunit beta [Escherichia coli BW2952]
gi|251786967|ref|YP_003001271.1| dnaN, subunit of DNA polymerase III, beta subunit and DNA
polymerase III, holoenzyme [Escherichia coli BL21(DE3)]
gi|253771437|ref|YP_003034268.1| DNA polymerase III subunit beta [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254163652|ref|YP_003046760.1| DNA polymerase III subunit beta [Escherichia coli B str. REL606]
gi|254290402|ref|YP_003056150.1| DNA polymerase III subunit beta [Escherichia coli BL21(DE3)]
gi|254795704|ref|YP_003080541.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str.
TW14359]
gi|260846514|ref|YP_003224292.1| DNA polymerase III, beta subunit [Escherichia coli O103:H2 str.
12009]
gi|260857888|ref|YP_003231779.1| DNA polymerase III subunit beta [Escherichia coli O26:H11 str.
11368]
gi|260870432|ref|YP_003236834.1| DNA polymerase III subunit beta [Escherichia coli O111:H- str.
11128]
gi|261225854|ref|ZP_05940135.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
FRIK2000]
gi|261258899|ref|ZP_05951432.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
FRIK966]
gi|291285120|ref|YP_003501938.1| DNA polymerase III subunit beta [Escherichia coli O55:H7 str.
CB9615]
gi|293407341|ref|ZP_06651263.1| DNA polymerase III subunit beta [Escherichia coli FVEC1412]
gi|293413155|ref|ZP_06655821.1| DNA polymerase III [Escherichia coli B354]
gi|293417174|ref|ZP_06659801.1| DNA polymerase III [Escherichia coli B185]
gi|297518856|ref|ZP_06937242.1| DNA polymerase III subunit beta [Escherichia coli OP50]
gi|298383082|ref|ZP_06992677.1| DNA polymerase III subunit beta [Escherichia coli FVEC1302]
gi|300824314|ref|ZP_07104430.1| DNA polymerase III, beta subunit [Escherichia coli MS 119-7]
gi|300896030|ref|ZP_07114591.1| DNA polymerase III, beta subunit [Escherichia coli MS 198-1]
gi|300903024|ref|ZP_07120966.1| DNA polymerase III, beta subunit [Escherichia coli MS 84-1]
gi|300917469|ref|ZP_07134129.1| DNA polymerase III, beta subunit [Escherichia coli MS 115-1]
gi|300925525|ref|ZP_07141400.1| DNA polymerase III, beta subunit [Escherichia coli MS 182-1]
gi|300932332|ref|ZP_07147600.1| DNA polymerase III, beta subunit [Escherichia coli MS 187-1]
gi|300940886|ref|ZP_07155413.1| DNA polymerase III, beta subunit [Escherichia coli MS 21-1]
gi|300947538|ref|ZP_07161715.1| DNA polymerase III, beta subunit [Escherichia coli MS 116-1]
gi|300956293|ref|ZP_07168595.1| DNA polymerase III, beta subunit [Escherichia coli MS 175-1]
gi|300983652|ref|ZP_07176693.1| DNA polymerase III, beta subunit [Escherichia coli MS 200-1]
gi|300984541|ref|ZP_07177031.1| DNA polymerase III, beta subunit [Escherichia coli MS 45-1]
gi|301020910|ref|ZP_07184965.1| DNA polymerase III, beta subunit [Escherichia coli MS 69-1]
gi|301028494|ref|ZP_07191734.1| DNA polymerase III, beta subunit [Escherichia coli MS 196-1]
gi|301047519|ref|ZP_07194595.1| DNA polymerase III, beta subunit [Escherichia coli MS 185-1]
gi|301305953|ref|ZP_07212035.1| DNA polymerase III, beta subunit [Escherichia coli MS 124-1]
gi|301325007|ref|ZP_07218557.1| DNA polymerase III, beta subunit [Escherichia coli MS 78-1]
gi|301644373|ref|ZP_07244374.1| DNA polymerase III, beta subunit [Escherichia coli MS 146-1]
gi|306815946|ref|ZP_07450084.1| DNA polymerase III subunit beta [Escherichia coli NC101]
gi|307313230|ref|ZP_07592855.1| DNA polymerase III, beta subunit [Escherichia coli W]
gi|309784249|ref|ZP_07678888.1| DNA polymerase III, beta subunit [Shigella dysenteriae 1617]
gi|309795750|ref|ZP_07690165.1| DNA polymerase III, beta subunit [Escherichia coli MS 145-7]
gi|312972007|ref|ZP_07786181.1| DNA polymerase III, beta subunit [Escherichia coli 1827-70]
gi|331644425|ref|ZP_08345554.1| DNA polymerase III, beta subunit [Escherichia coli H736]
gi|331649527|ref|ZP_08350613.1| DNA polymerase III, beta subunit [Escherichia coli M605]
gi|331655361|ref|ZP_08356360.1| DNA polymerase III, beta subunit [Escherichia coli M718]
gi|331660043|ref|ZP_08360981.1| DNA polymerase III, beta subunit [Escherichia coli TA206]
gi|331665351|ref|ZP_08366252.1| DNA polymerase III, beta subunit [Escherichia coli TA143]
gi|331670545|ref|ZP_08371384.1| DNA polymerase III, beta subunit [Escherichia coli TA271]
gi|331675191|ref|ZP_08375944.1| DNA polymerase III, beta subunit [Escherichia coli TA280]
gi|331679799|ref|ZP_08380469.1| DNA polymerase III, beta subunit [Escherichia coli H591]
gi|331685425|ref|ZP_08386011.1| DNA polymerase III, beta subunit [Escherichia coli H299]
gi|332282512|ref|ZP_08394925.1| DNA polymerase III subunit beta [Shigella sp. D9]
gi|378710838|ref|YP_005275731.1| DNA polymerase III subunit beta [Escherichia coli KO11FL]
gi|383180735|ref|YP_005458740.1| DNA polymerase III subunit beta [Shigella sonnei 53G]
gi|386282622|ref|ZP_10060269.1| DNA polymerase III subunit beta [Escherichia sp. 4_1_40B]
gi|386593592|ref|YP_006089992.1| DNA polymerase III subunit beta [Escherichia coli DH1]
gi|386601739|ref|YP_006103245.1| DNA polymerase III subunit beta [Escherichia coli IHE3034]
gi|386606293|ref|YP_006112593.1| DNA polymerase III subunit beta [Escherichia coli UM146]
gi|386611090|ref|YP_006126576.1| DNA polymerase III subunit beta [Escherichia coli W]
gi|386616523|ref|YP_006136189.1| DNA polymerase III, beta subunit DnaN [Escherichia coli UMNK88]
gi|386621386|ref|YP_006140966.1| DNA polymerase III subunit beta [Escherichia coli NA114]
gi|386626603|ref|YP_006146331.1| DNA polymerase III subunit beta [Escherichia coli O7:K1 str. CE10]
gi|386631645|ref|YP_006151365.1| DNA polymerase III subunit beta [Escherichia coli str. 'clone D
i2']
gi|386636565|ref|YP_006156284.1| DNA polymerase III subunit beta [Escherichia coli str. 'clone D
i14']
gi|386641349|ref|YP_006108147.1| DNA polymerase III subunit beta [Escherichia coli ABU 83972]
gi|386699209|ref|YP_006163046.1| DNA polymerase III subunit beta [Escherichia coli KO11FL]
gi|386706976|ref|YP_006170823.1| DNA polymerase III subunit beta [Escherichia coli P12b]
gi|386711617|ref|YP_006175338.1| DNA polymerase III subunit beta [Escherichia coli W]
gi|387509160|ref|YP_006161416.1| DNA polymerase III subunit beta [Escherichia coli O55:H7 str.
RM12579]
gi|387614412|ref|YP_006117528.1| DNA polymerase III beta-subunit [Escherichia coli ETEC H10407]
gi|387619007|ref|YP_006122029.1| DNA polymerase III subunit beta [Escherichia coli O83:H1 str. NRG
857C]
gi|387623361|ref|YP_006130989.1| DNA polymerase III subunit beta [Escherichia coli DH1]
gi|387831598|ref|YP_003351535.1| DNA polymerase III beta subunit [Escherichia coli SE15]
gi|387884932|ref|YP_006315234.1| DNA polymerase III subunit beta [Escherichia coli Xuzhou21]
gi|388479540|ref|YP_491734.1| DNA polymerase III subunit beta [Escherichia coli str. K-12 substr.
W3110]
gi|404377104|ref|ZP_10982245.1| DNA polymerase III subunit beta [Escherichia sp. 1_1_43]
gi|407471749|ref|YP_006781808.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407479589|ref|YP_006776738.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
2011C-3493]
gi|410480141|ref|YP_006767687.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
2009EL-2050]
gi|414578396|ref|ZP_11435563.1| DNA polymerase III, beta subunit [Shigella sonnei 3233-85]
gi|415773933|ref|ZP_11486480.1| DNA polymerase III, beta subunit [Escherichia coli 3431]
gi|415785863|ref|ZP_11493214.1| DNA polymerase III, beta subunit [Escherichia coli EPECa14]
gi|415799859|ref|ZP_11499071.1| DNA polymerase III, beta subunit [Escherichia coli E128010]
gi|415810944|ref|ZP_11503294.1| DNA polymerase III, beta subunit [Escherichia coli LT-68]
gi|415821752|ref|ZP_11510533.1| DNA polymerase III, beta subunit [Escherichia coli OK1180]
gi|415831374|ref|ZP_11517091.1| DNA polymerase III, beta subunit [Escherichia coli OK1357]
gi|415838517|ref|ZP_11520488.1| DNA polymerase III, beta subunit [Escherichia coli RN587/1]
gi|415851548|ref|ZP_11528211.1| DNA polymerase III, beta subunit [Shigella sonnei 53G]
gi|415864811|ref|ZP_11537783.1| DNA polymerase III, beta subunit [Escherichia coli MS 85-1]
gi|416269305|ref|ZP_11642419.1| DNA polymerase III beta subunit [Shigella dysenteriae CDC 74-1112]
gi|416284405|ref|ZP_11647251.1| DNA polymerase III beta subunit [Shigella boydii ATCC 9905]
gi|416297964|ref|ZP_11651805.1| DNA polymerase III beta subunit [Shigella flexneri CDC 796-83]
gi|416315589|ref|ZP_11659402.1| DNA polymerase III beta subunit [Escherichia coli O157:H7 str.
1044]
gi|416319843|ref|ZP_11662395.1| DNA polymerase III beta subunit [Escherichia coli O157:H7 str.
EC1212]
gi|416328604|ref|ZP_11668273.1| DNA polymerase III beta subunit [Escherichia coli O157:H7 str.
1125]
gi|416338083|ref|ZP_11674317.1| DNA polymerase III beta subunit [Escherichia coli WV_060327]
gi|416342020|ref|ZP_11676386.1| DNA polymerase III beta subunit [Escherichia coli EC4100B]
gi|416778590|ref|ZP_11875987.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str.
G5101]
gi|416789853|ref|ZP_11880830.1| DNA polymerase III subunit beta [Escherichia coli O157:H- str.
493-89]
gi|416801737|ref|ZP_11885769.1| DNA polymerase III subunit beta [Escherichia coli O157:H- str. H
2687]
gi|416812590|ref|ZP_11890689.1| DNA polymerase III subunit beta [Escherichia coli O55:H7 str.
3256-97]
gi|416823014|ref|ZP_11895311.1| DNA polymerase III subunit beta [Escherichia coli O55:H7 str. USDA
5905]
gi|416833363|ref|ZP_11900301.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str.
LSU-61]
gi|416900233|ref|ZP_11929544.1| DNA polymerase III, beta subunit [Escherichia coli STEC_7v]
gi|417116745|ref|ZP_11967606.1| DNA polymerase III, beta subunit [Escherichia coli 1.2741]
gi|417125656|ref|ZP_11973617.1| DNA polymerase III, beta subunit [Escherichia coli 97.0246]
gi|417134990|ref|ZP_11979775.1| DNA polymerase III, beta subunit [Escherichia coli 5.0588]
gi|417149409|ref|ZP_11989500.1| DNA polymerase III, beta subunit [Escherichia coli 1.2264]
gi|417157322|ref|ZP_11994946.1| DNA polymerase III, beta subunit [Escherichia coli 96.0497]
gi|417169093|ref|ZP_12001348.1| DNA polymerase III, beta subunit [Escherichia coli 99.0741]
gi|417175395|ref|ZP_12005191.1| DNA polymerase III, beta subunit [Escherichia coli 3.2608]
gi|417185360|ref|ZP_12010761.1| DNA polymerase III, beta subunit [Escherichia coli 93.0624]
gi|417201797|ref|ZP_12018047.1| DNA polymerase III, beta subunit [Escherichia coli 4.0522]
gi|417209881|ref|ZP_12020983.1| DNA polymerase III, beta subunit [Escherichia coli JB1-95]
gi|417222317|ref|ZP_12025757.1| DNA polymerase III, beta subunit [Escherichia coli 96.154]
gi|417227708|ref|ZP_12029466.1| DNA polymerase III, beta subunit [Escherichia coli 5.0959]
gi|417245972|ref|ZP_12039468.1| DNA polymerase III, beta subunit [Escherichia coli 9.0111]
gi|417264084|ref|ZP_12051478.1| DNA polymerase III, beta subunit [Escherichia coli 2.3916]
gi|417268864|ref|ZP_12056224.1| DNA polymerase III, beta subunit [Escherichia coli 3.3884]
gi|417273050|ref|ZP_12060397.1| DNA polymerase III, beta subunit [Escherichia coli 2.4168]
gi|417279221|ref|ZP_12066531.1| DNA polymerase III, beta subunit [Escherichia coli 3.2303]
gi|417281496|ref|ZP_12068796.1| DNA polymerase III, beta subunit [Escherichia coli 3003]
gi|417285781|ref|ZP_12073072.1| DNA polymerase III, beta subunit [Escherichia coli TW07793]
gi|417293747|ref|ZP_12081026.1| DNA polymerase III, beta subunit [Escherichia coli B41]
gi|417296070|ref|ZP_12083317.1| DNA polymerase III, beta subunit [Escherichia coli 900105 (10e)]
gi|417583328|ref|ZP_12234127.1| DNA polymerase III, beta subunit [Escherichia coli STEC_B2F1]
gi|417588851|ref|ZP_12239613.1| DNA polymerase III, beta subunit [Escherichia coli STEC_C165-02]
gi|417594166|ref|ZP_12244852.1| DNA polymerase III, beta subunit [Escherichia coli 2534-86]
gi|417599142|ref|ZP_12249766.1| DNA polymerase III, beta subunit [Escherichia coli 3030-1]
gi|417604611|ref|ZP_12255173.1| DNA polymerase III, beta subunit [Escherichia coli STEC_94C]
gi|417610459|ref|ZP_12260950.1| DNA polymerase III, beta subunit [Escherichia coli STEC_DG131-3]
gi|417615368|ref|ZP_12265817.1| DNA polymerase III, beta subunit [Escherichia coli STEC_EH250]
gi|417620378|ref|ZP_12270779.1| DNA polymerase III, beta subunit [Escherichia coli G58-1]
gi|417625822|ref|ZP_12276112.1| DNA polymerase III, beta subunit [Escherichia coli STEC_H.1.8]
gi|417631149|ref|ZP_12281383.1| DNA polymerase III, beta subunit [Escherichia coli STEC_MHI813]
gi|417636667|ref|ZP_12286874.1| DNA polymerase III, beta subunit [Escherichia coli STEC_S1191]
gi|417641651|ref|ZP_12291777.1| DNA polymerase III, beta subunit [Escherichia coli TX1999]
gi|417675467|ref|ZP_12324889.1| DNA polymerase III, beta subunit [Shigella dysenteriae 155-74]
gi|417684532|ref|ZP_12333872.1| DNA polymerase III, beta subunit [Shigella boydii 3594-74]
gi|417692089|ref|ZP_12341294.1| DNA polymerase III, beta subunit [Shigella boydii 5216-82]
gi|417807384|ref|ZP_12454314.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
LB226692]
gi|417835126|ref|ZP_12481566.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
01-09591]
gi|417946194|ref|ZP_12589416.1| DNA polymerase III subunit beta [Escherichia coli XH140A]
gi|417976489|ref|ZP_12617282.1| DNA polymerase III subunit beta [Escherichia coli XH001]
gi|418040399|ref|ZP_12678643.1| DNA polymerase III subunit beta [Escherichia coli W26]
gi|418269186|ref|ZP_12887720.1| DNA polymerase III, beta subunit [Shigella sonnei str. Moseley]
gi|418305336|ref|ZP_12917130.1| DNA polymerase III, beta subunit [Escherichia coli UMNF18]
gi|418955888|ref|ZP_13507821.1| DNA polymerase III subunit beta [Escherichia coli J53]
gi|419047913|ref|ZP_13594842.1| DNA polymerase III, beta subunit [Escherichia coli DEC3A]
gi|419053576|ref|ZP_13600442.1| DNA polymerase III, beta subunit [Escherichia coli DEC3B]
gi|419059535|ref|ZP_13606335.1| DNA polymerase III, beta subunit [Escherichia coli DEC3C]
gi|419065086|ref|ZP_13611796.1| DNA polymerase III, beta subunit [Escherichia coli DEC3D]
gi|419072041|ref|ZP_13617641.1| DNA polymerase III, beta subunit [Escherichia coli DEC3E]
gi|419077827|ref|ZP_13623325.1| DNA polymerase III, beta subunit [Escherichia coli DEC3F]
gi|419083020|ref|ZP_13628462.1| DNA polymerase III, beta subunit [Escherichia coli DEC4A]
gi|419088887|ref|ZP_13634238.1| DNA polymerase III, beta subunit [Escherichia coli DEC4B]
gi|419094778|ref|ZP_13640053.1| DNA polymerase III, beta subunit [Escherichia coli DEC4C]
gi|419100612|ref|ZP_13645798.1| DNA polymerase III, beta subunit [Escherichia coli DEC4D]
gi|419106419|ref|ZP_13651540.1| DNA polymerase III, beta subunit [Escherichia coli DEC4E]
gi|419111802|ref|ZP_13656853.1| DNA polymerase III, beta subunit [Escherichia coli DEC4F]
gi|419117267|ref|ZP_13662275.1| DNA polymerase III, beta subunit [Escherichia coli DEC5A]
gi|419123081|ref|ZP_13668020.1| DNA polymerase III, beta subunit [Escherichia coli DEC5B]
gi|419128430|ref|ZP_13673300.1| DNA polymerase III, beta subunit [Escherichia coli DEC5C]
gi|419133923|ref|ZP_13678747.1| DNA polymerase III, beta subunit [Escherichia coli DEC5D]
gi|419139064|ref|ZP_13683854.1| DNA polymerase III, beta subunit [Escherichia coli DEC5E]
gi|419144819|ref|ZP_13689546.1| DNA polymerase III, beta subunit [Escherichia coli DEC6A]
gi|419150699|ref|ZP_13695346.1| DNA polymerase III, beta subunit [Escherichia coli DEC6B]
gi|419156222|ref|ZP_13700777.1| DNA polymerase III, beta subunit [Escherichia coli DEC6C]
gi|419161578|ref|ZP_13706069.1| DNA polymerase III, beta subunit [Escherichia coli DEC6D]
gi|419166641|ref|ZP_13711090.1| DNA polymerase III, beta subunit [Escherichia coli DEC6E]
gi|419172660|ref|ZP_13716532.1| DNA polymerase III, beta subunit [Escherichia coli DEC7A]
gi|419177342|ref|ZP_13721150.1| DNA polymerase III, beta subunit [Escherichia coli DEC7B]
gi|419183223|ref|ZP_13726829.1| DNA polymerase III, beta subunit [Escherichia coli DEC7C]
gi|419188805|ref|ZP_13732309.1| DNA polymerase III, beta subunit [Escherichia coli DEC7D]
gi|419194188|ref|ZP_13737625.1| DNA polymerase III, beta subunit [Escherichia coli DEC7E]
gi|419199482|ref|ZP_13742771.1| DNA polymerase III, beta subunit [Escherichia coli DEC8A]
gi|419205789|ref|ZP_13748944.1| DNA polymerase III, beta subunit [Escherichia coli DEC8B]
gi|419212225|ref|ZP_13755288.1| DNA polymerase III, beta subunit [Escherichia coli DEC8C]
gi|419216793|ref|ZP_13759792.1| DNA polymerase III, beta subunit [Escherichia coli DEC8D]
gi|419223889|ref|ZP_13766799.1| DNA polymerase III, beta subunit [Escherichia coli DEC8E]
gi|419229386|ref|ZP_13772220.1| DNA polymerase III, beta subunit [Escherichia coli DEC9A]
gi|419234928|ref|ZP_13777692.1| DNA polymerase III, beta subunit [Escherichia coli DEC9B]
gi|419240250|ref|ZP_13782952.1| DNA polymerase III, beta subunit [Escherichia coli DEC9C]
gi|419245801|ref|ZP_13788431.1| DNA polymerase III, beta subunit [Escherichia coli DEC9D]
gi|419251612|ref|ZP_13794176.1| DNA polymerase III, beta subunit [Escherichia coli DEC9E]
gi|419257502|ref|ZP_13799998.1| DNA polymerase III, beta subunit [Escherichia coli DEC10A]
gi|419263629|ref|ZP_13806032.1| DNA polymerase III, beta subunit [Escherichia coli DEC10B]
gi|419269827|ref|ZP_13812167.1| DNA polymerase III, beta subunit [Escherichia coli DEC10C]
gi|419275016|ref|ZP_13817301.1| DNA polymerase III, beta subunit [Escherichia coli DEC10D]
gi|419280551|ref|ZP_13822788.1| DNA polymerase III, beta subunit [Escherichia coli DEC10E]
gi|419286730|ref|ZP_13828888.1| DNA polymerase III, beta subunit [Escherichia coli DEC10F]
gi|419291925|ref|ZP_13834008.1| DNA polymerase III, beta subunit [Escherichia coli DEC11A]
gi|419297205|ref|ZP_13839240.1| DNA polymerase III, beta subunit [Escherichia coli DEC11B]
gi|419302798|ref|ZP_13844789.1| DNA polymerase III, beta subunit [Escherichia coli DEC11C]
gi|419308740|ref|ZP_13850629.1| DNA polymerase III, beta subunit [Escherichia coli DEC11D]
gi|419313762|ref|ZP_13855620.1| DNA polymerase III, beta subunit [Escherichia coli DEC11E]
gi|419319205|ref|ZP_13861000.1| DNA polymerase III, beta subunit [Escherichia coli DEC12A]
gi|419325461|ref|ZP_13867142.1| DNA polymerase III, beta subunit [Escherichia coli DEC12B]
gi|419331423|ref|ZP_13873015.1| DNA polymerase III, beta subunit [Escherichia coli DEC12C]
gi|419336900|ref|ZP_13878411.1| DNA polymerase III, beta subunit [Escherichia coli DEC12D]
gi|419342294|ref|ZP_13883747.1| DNA polymerase III, beta subunit [Escherichia coli DEC12E]
gi|419347485|ref|ZP_13888852.1| DNA polymerase III, beta subunit [Escherichia coli DEC13A]
gi|419351947|ref|ZP_13893274.1| DNA polymerase III, beta subunit [Escherichia coli DEC13B]
gi|419357417|ref|ZP_13898663.1| DNA polymerase III, beta subunit [Escherichia coli DEC13C]
gi|419362391|ref|ZP_13903597.1| DNA polymerase III, beta subunit [Escherichia coli DEC13D]
gi|419367221|ref|ZP_13908370.1| DNA polymerase III, beta subunit [Escherichia coli DEC13E]
gi|419372567|ref|ZP_13913671.1| DNA polymerase III, beta subunit [Escherichia coli DEC14A]
gi|419377830|ref|ZP_13918845.1| DNA polymerase III, beta subunit [Escherichia coli DEC14B]
gi|419383223|ref|ZP_13924164.1| DNA polymerase III, beta subunit [Escherichia coli DEC14C]
gi|419388467|ref|ZP_13929332.1| DNA polymerase III, beta subunit [Escherichia coli DEC14D]
gi|419393966|ref|ZP_13934762.1| DNA polymerase III, beta subunit [Escherichia coli DEC15A]
gi|419399106|ref|ZP_13939866.1| DNA polymerase III, beta subunit [Escherichia coli DEC15B]
gi|419404351|ref|ZP_13945068.1| DNA polymerase III, beta subunit [Escherichia coli DEC15C]
gi|419409515|ref|ZP_13950197.1| DNA polymerase III, beta subunit [Escherichia coli DEC15D]
gi|419415072|ref|ZP_13955704.1| DNA polymerase III, beta subunit [Escherichia coli DEC15E]
gi|419702548|ref|ZP_14230141.1| DNA polymerase III subunit beta [Escherichia coli SCI-07]
gi|419804159|ref|ZP_14329321.1| DNA polymerase III subunit beta [Escherichia coli AI27]
gi|419810781|ref|ZP_14335660.1| DNA polymerase III subunit beta [Escherichia coli O32:H37 str. P4]
gi|419867129|ref|ZP_14389467.1| DNA polymerase III subunit beta [Escherichia coli O103:H25 str.
CVM9340]
gi|419872402|ref|ZP_14394439.1| DNA polymerase III subunit beta [Escherichia coli O103:H2 str.
CVM9450]
gi|419874541|ref|ZP_14396466.1| DNA polymerase III subunit beta [Escherichia coli O111:H11 str.
CVM9534]
gi|419881579|ref|ZP_14402899.1| DNA polymerase III subunit beta [Escherichia coli O111:H11 str.
CVM9545]
gi|419890110|ref|ZP_14410418.1| DNA polymerase III subunit beta [Escherichia coli O111:H8 str.
CVM9570]
gi|419898300|ref|ZP_14417860.1| DNA polymerase III subunit beta [Escherichia coli O111:H8 str.
CVM9574]
gi|419899337|ref|ZP_14418851.1| DNA polymerase III subunit beta [Escherichia coli O26:H11 str.
CVM9942]
gi|419910959|ref|ZP_14429464.1| hypothetical protein ECO10026_26223 [Escherichia coli O26:H11 str.
CVM10026]
gi|419911489|ref|ZP_14429971.1| DNA polymerase III subunit beta [Escherichia coli KD1]
gi|419917702|ref|ZP_14435930.1| DNA polymerase III subunit beta [Escherichia coli KD2]
gi|419926348|ref|ZP_14444123.1| DNA polymerase III subunit beta [Escherichia coli 541-15]
gi|419929227|ref|ZP_14446910.1| DNA polymerase III subunit beta [Escherichia coli 541-1]
gi|419934266|ref|ZP_14451405.1| DNA polymerase III subunit beta [Escherichia coli 576-1]
gi|419940064|ref|ZP_14456833.1| DNA polymerase III subunit beta [Escherichia coli 75]
gi|419943757|ref|ZP_14460270.1| DNA polymerase III subunit beta [Escherichia coli HM605]
gi|419949571|ref|ZP_14465812.1| DNA polymerase III subunit beta [Escherichia coli CUMT8]
gi|420091563|ref|ZP_14603308.1| DNA polymerase III subunit beta [Escherichia coli O111:H8 str.
CVM9602]
gi|420097231|ref|ZP_14608534.1| DNA polymerase III subunit beta [Escherichia coli O111:H8 str.
CVM9634]
gi|420099597|ref|ZP_14610820.1| DNA polymerase III subunit beta [Escherichia coli O111:H11 str.
CVM9455]
gi|420106562|ref|ZP_14616961.1| DNA polymerase III subunit beta [Escherichia coli O111:H11 str.
CVM9553]
gi|420112522|ref|ZP_14622320.1| DNA polymerase III subunit beta [Escherichia coli O26:H11 str.
CVM10021]
gi|420124369|ref|ZP_14633228.1| DNA polymerase III subunit beta [Escherichia coli O26:H11 str.
CVM10030]
gi|420125242|ref|ZP_14634066.1| DNA polymerase III subunit beta [Escherichia coli O26:H11 str.
CVM10224]
gi|420135524|ref|ZP_14643607.1| DNA polymerase III subunit beta [Escherichia coli O26:H11 str.
CVM9952]
gi|420272150|ref|ZP_14774498.1| DNA polymerase III, beta subunit [Escherichia coli PA22]
gi|420277834|ref|ZP_14780113.1| DNA polymerase III, beta subunit [Escherichia coli PA40]
gi|420282680|ref|ZP_14784912.1| DNA polymerase III, beta subunit [Escherichia coli TW06591]
gi|420289302|ref|ZP_14791483.1| DNA polymerase III, beta subunit [Escherichia coli TW10246]
gi|420294974|ref|ZP_14797081.1| DNA polymerase III, beta subunit [Escherichia coli TW11039]
gi|420300803|ref|ZP_14802846.1| DNA polymerase III, beta subunit [Escherichia coli TW09109]
gi|420306690|ref|ZP_14808676.1| DNA polymerase III, beta subunit [Escherichia coli TW10119]
gi|420311978|ref|ZP_14813904.1| DNA polymerase III, beta subunit [Escherichia coli EC1738]
gi|420317755|ref|ZP_14819624.1| DNA polymerase III, beta subunit [Escherichia coli EC1734]
gi|420328013|ref|ZP_14829751.1| DNA polymerase III, beta subunit [Shigella flexneri CCH060]
gi|420338519|ref|ZP_14840073.1| DNA polymerase III, beta subunit [Shigella flexneri K-315]
gi|420345675|ref|ZP_14847104.1| DNA polymerase III, beta subunit [Shigella boydii 965-58]
gi|420355383|ref|ZP_14856451.1| DNA polymerase III, beta subunit [Shigella boydii 4444-74]
gi|420360864|ref|ZP_14861814.1| DNA polymerase III, beta subunit [Shigella sonnei 3226-85]
gi|420365476|ref|ZP_14866340.1| DNA polymerase III, beta subunit [Shigella sonnei 4822-66]
gi|420388057|ref|ZP_14887389.1| DNA polymerase III, beta subunit [Escherichia coli EPECa12]
gi|420393846|ref|ZP_14893090.1| DNA polymerase III, beta subunit [Escherichia coli EPEC C342-62]
gi|421684961|ref|ZP_16124738.1| DNA polymerase III, beta subunit [Shigella flexneri 1485-80]
gi|421777129|ref|ZP_16213728.1| DNA polymerase III subunit beta [Escherichia coli AD30]
gi|421814753|ref|ZP_16250453.1| DNA polymerase III, beta subunit [Escherichia coli 8.0416]
gi|421820499|ref|ZP_16255983.1| DNA polymerase III, beta subunit [Escherichia coli 10.0821]
gi|421827306|ref|ZP_16262652.1| DNA polymerase III, beta subunit [Escherichia coli FRIK920]
gi|421833334|ref|ZP_16268612.1| DNA polymerase III, beta subunit [Escherichia coli PA7]
gi|422335103|ref|ZP_16416105.1| DNA polymerase III subunit beta [Escherichia coli 4_1_47FAA]
gi|422353584|ref|ZP_16434335.1| DNA polymerase III, beta subunit [Escherichia coli MS 117-3]
gi|422360691|ref|ZP_16441320.1| DNA polymerase III, beta subunit [Escherichia coli MS 110-3]
gi|422364419|ref|ZP_16444937.1| DNA polymerase III, beta subunit [Escherichia coli MS 153-1]
gi|422371338|ref|ZP_16451719.1| DNA polymerase III, beta subunit [Escherichia coli MS 16-3]
gi|422375957|ref|ZP_16456215.1| DNA polymerase III, beta subunit [Escherichia coli MS 60-1]
gi|422380736|ref|ZP_16460910.1| DNA polymerase III, beta subunit [Escherichia coli MS 57-2]
gi|422751559|ref|ZP_16805468.1| DNA polymerase III [Escherichia coli H252]
gi|422756600|ref|ZP_16810422.1| DNA polymerase III [Escherichia coli H263]
gi|422764113|ref|ZP_16817865.1| DNA polymerase III [Escherichia coli E1167]
gi|422768512|ref|ZP_16822236.1| DNA polymerase III [Escherichia coli E1520]
gi|422783694|ref|ZP_16836477.1| DNA polymerase III [Escherichia coli TW10509]
gi|422788569|ref|ZP_16841305.1| DNA polymerase III [Escherichia coli H489]
gi|422792312|ref|ZP_16845013.1| DNA polymerase III [Escherichia coli TA007]
gi|422801668|ref|ZP_16850164.1| DNA polymerase III [Escherichia coli M863]
gi|422818868|ref|ZP_16867080.1| DNA polymerase III subunit beta [Escherichia coli M919]
gi|422831162|ref|ZP_16879311.1| DNA polymerase III subunit beta [Escherichia coli B093]
gi|422836028|ref|ZP_16884078.1| DNA polymerase III subunit beta [Escherichia coli E101]
gi|422841749|ref|ZP_16889718.1| DNA polymerase III subunit beta [Escherichia coli H397]
gi|422961861|ref|ZP_16972597.1| DNA polymerase III subunit beta [Escherichia coli H494]
gi|422976818|ref|ZP_16977196.1| DNA polymerase III subunit beta [Escherichia coli TA124]
gi|422989973|ref|ZP_16980745.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
C227-11]
gi|422996871|ref|ZP_16987633.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
C236-11]
gi|423001964|ref|ZP_16992717.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
09-7901]
gi|423005620|ref|ZP_16996365.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
04-8351]
gi|423012182|ref|ZP_17002914.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-3677]
gi|423021408|ref|ZP_17012115.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-4404]
gi|423026570|ref|ZP_17017265.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-4522]
gi|423032398|ref|ZP_17023084.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-4623]
gi|423035271|ref|ZP_17025949.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423040393|ref|ZP_17031062.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423047078|ref|ZP_17037737.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423055617|ref|ZP_17044423.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423057620|ref|ZP_17046419.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-4632 C5]
gi|423703229|ref|ZP_17677661.1| DNA polymerase III subunit beta [Escherichia coli H730]
gi|423708016|ref|ZP_17682396.1| DNA polymerase III subunit beta [Escherichia coli B799]
gi|423727866|ref|ZP_17701687.1| DNA polymerase III, beta subunit [Escherichia coli PA31]
gi|424080023|ref|ZP_17816970.1| DNA polymerase III, beta subunit [Escherichia coli FDA505]
gi|424086423|ref|ZP_17822899.1| DNA polymerase III, beta subunit [Escherichia coli FDA517]
gi|424092839|ref|ZP_17828751.1| DNA polymerase III, beta subunit [Escherichia coli FRIK1996]
gi|424099519|ref|ZP_17834767.1| DNA polymerase III, beta subunit [Escherichia coli FRIK1985]
gi|424105716|ref|ZP_17840438.1| DNA polymerase III, beta subunit [Escherichia coli FRIK1990]
gi|424112357|ref|ZP_17846573.1| DNA polymerase III, beta subunit [Escherichia coli 93-001]
gi|424118294|ref|ZP_17852117.1| DNA polymerase III, beta subunit [Escherichia coli PA3]
gi|424124491|ref|ZP_17857779.1| DNA polymerase III, beta subunit [Escherichia coli PA5]
gi|424130654|ref|ZP_17863546.1| DNA polymerase III, beta subunit [Escherichia coli PA9]
gi|424136968|ref|ZP_17869395.1| DNA polymerase III, beta subunit [Escherichia coli PA10]
gi|424143522|ref|ZP_17875366.1| DNA polymerase III, beta subunit [Escherichia coli PA14]
gi|424149904|ref|ZP_17881265.1| DNA polymerase III, beta subunit [Escherichia coli PA15]
gi|424163616|ref|ZP_17886677.1| DNA polymerase III, beta subunit [Escherichia coli PA24]
gi|424256722|ref|ZP_17892222.1| DNA polymerase III, beta subunit [Escherichia coli PA25]
gi|424335697|ref|ZP_17898158.1| DNA polymerase III, beta subunit [Escherichia coli PA28]
gi|424452214|ref|ZP_17903855.1| DNA polymerase III, beta subunit [Escherichia coli PA32]
gi|424458390|ref|ZP_17909479.1| DNA polymerase III, beta subunit [Escherichia coli PA33]
gi|424464921|ref|ZP_17915238.1| DNA polymerase III, beta subunit [Escherichia coli PA39]
gi|424471150|ref|ZP_17920941.1| DNA polymerase III, beta subunit [Escherichia coli PA41]
gi|424477654|ref|ZP_17926955.1| DNA polymerase III, beta subunit [Escherichia coli PA42]
gi|424483435|ref|ZP_17932402.1| DNA polymerase III, beta subunit [Escherichia coli TW07945]
gi|424489624|ref|ZP_17938152.1| DNA polymerase III, beta subunit [Escherichia coli TW09098]
gi|424496320|ref|ZP_17943850.1| DNA polymerase III, beta subunit [Escherichia coli TW09195]
gi|424502942|ref|ZP_17949816.1| DNA polymerase III, beta subunit [Escherichia coli EC4203]
gi|424509212|ref|ZP_17955571.1| DNA polymerase III, beta subunit [Escherichia coli EC4196]
gi|424516611|ref|ZP_17961191.1| DNA polymerase III, beta subunit [Escherichia coli TW14313]
gi|424522748|ref|ZP_17966843.1| DNA polymerase III, beta subunit [Escherichia coli TW14301]
gi|424528623|ref|ZP_17972323.1| DNA polymerase III, beta subunit [Escherichia coli EC4421]
gi|424534769|ref|ZP_17978103.1| DNA polymerase III, beta subunit [Escherichia coli EC4422]
gi|424540826|ref|ZP_17983755.1| DNA polymerase III, beta subunit [Escherichia coli EC4013]
gi|424546995|ref|ZP_17989322.1| DNA polymerase III, beta subunit [Escherichia coli EC4402]
gi|424553196|ref|ZP_17995013.1| DNA polymerase III, beta subunit [Escherichia coli EC4439]
gi|424559396|ref|ZP_18000781.1| DNA polymerase III, beta subunit [Escherichia coli EC4436]
gi|424565720|ref|ZP_18006710.1| DNA polymerase III, beta subunit [Escherichia coli EC4437]
gi|424571844|ref|ZP_18012370.1| DNA polymerase III, beta subunit [Escherichia coli EC4448]
gi|424578003|ref|ZP_18018028.1| DNA polymerase III, beta subunit [Escherichia coli EC1845]
gi|424583835|ref|ZP_18023467.1| DNA polymerase III, beta subunit [Escherichia coli EC1863]
gi|424752876|ref|ZP_18180844.1| DNA polymerase III subunit beta [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424758775|ref|ZP_18186451.1| DNA polymerase III subunit beta [Escherichia coli O111:H11 str.
CFSAN001630]
gi|424773440|ref|ZP_18200500.1| DNA polymerase III subunit beta [Escherichia coli O111:H8 str.
CFSAN001632]
gi|425100473|ref|ZP_18503194.1| DNA polymerase III, beta subunit [Escherichia coli 3.4870]
gi|425106581|ref|ZP_18508883.1| DNA polymerase III, beta subunit [Escherichia coli 5.2239]
gi|425112584|ref|ZP_18514491.1| DNA polymerase III, beta subunit [Escherichia coli 6.0172]
gi|425117320|ref|ZP_18519097.1| DNA polymerase III, beta subunit [Escherichia coli 8.0566]
gi|425122050|ref|ZP_18523725.1| DNA polymerase III, beta subunit [Escherichia coli 8.0569]
gi|425128512|ref|ZP_18529667.1| DNA polymerase III, beta subunit [Escherichia coli 8.0586]
gi|425134282|ref|ZP_18535119.1| DNA polymerase III, beta subunit [Escherichia coli 8.2524]
gi|425140876|ref|ZP_18541243.1| DNA polymerase III, beta subunit [Escherichia coli 10.0833]
gi|425146547|ref|ZP_18546525.1| DNA polymerase III, beta subunit [Escherichia coli 10.0869]
gi|425152662|ref|ZP_18552263.1| DNA polymerase III, beta subunit [Escherichia coli 88.0221]
gi|425158563|ref|ZP_18557812.1| DNA polymerase III, beta subunit [Escherichia coli PA34]
gi|425164880|ref|ZP_18563754.1| DNA polymerase III, beta subunit [Escherichia coli FDA506]
gi|425170629|ref|ZP_18569089.1| DNA polymerase III, beta subunit [Escherichia coli FDA507]
gi|425176674|ref|ZP_18574780.1| DNA polymerase III, beta subunit [Escherichia coli FDA504]
gi|425182735|ref|ZP_18580417.1| DNA polymerase III, beta subunit [Escherichia coli FRIK1999]
gi|425189030|ref|ZP_18586287.1| DNA polymerase III, beta subunit [Escherichia coli FRIK1997]
gi|425195763|ref|ZP_18592519.1| DNA polymerase III, beta subunit [Escherichia coli NE1487]
gi|425202236|ref|ZP_18598432.1| DNA polymerase III, beta subunit [Escherichia coli NE037]
gi|425208616|ref|ZP_18604400.1| DNA polymerase III, beta subunit [Escherichia coli FRIK2001]
gi|425214373|ref|ZP_18609762.1| DNA polymerase III, beta subunit [Escherichia coli PA4]
gi|425220502|ref|ZP_18615451.1| DNA polymerase III, beta subunit [Escherichia coli PA23]
gi|425227143|ref|ZP_18621597.1| DNA polymerase III, beta subunit [Escherichia coli PA49]
gi|425233303|ref|ZP_18627329.1| DNA polymerase III, beta subunit [Escherichia coli PA45]
gi|425239226|ref|ZP_18632933.1| DNA polymerase III, beta subunit [Escherichia coli TT12B]
gi|425245459|ref|ZP_18638753.1| DNA polymerase III, beta subunit [Escherichia coli MA6]
gi|425251653|ref|ZP_18644583.1| DNA polymerase III, beta subunit [Escherichia coli 5905]
gi|425257445|ref|ZP_18649933.1| DNA polymerase III, beta subunit [Escherichia coli CB7326]
gi|425263710|ref|ZP_18655689.1| DNA polymerase III, beta subunit [Escherichia coli EC96038]
gi|425269698|ref|ZP_18661312.1| DNA polymerase III, beta subunit [Escherichia coli 5412]
gi|425275002|ref|ZP_18666382.1| DNA polymerase III, beta subunit [Escherichia coli TW15901]
gi|425280162|ref|ZP_18671375.1| DNA polymerase III, beta subunit [Escherichia coli ARS4.2123]
gi|425285580|ref|ZP_18676593.1| DNA polymerase III, beta subunit [Escherichia coli TW00353]
gi|425290917|ref|ZP_18681727.1| DNA polymerase III, beta subunit [Escherichia coli 3006]
gi|425297168|ref|ZP_18687291.1| DNA polymerase III, beta subunit [Escherichia coli PA38]
gi|425302607|ref|ZP_18692486.1| DNA polymerase III, beta subunit [Escherichia coli 07798]
gi|425307516|ref|ZP_18697184.1| DNA polymerase III, beta subunit [Escherichia coli N1]
gi|425313865|ref|ZP_18703023.1| DNA polymerase III, beta subunit [Escherichia coli EC1735]
gi|425319847|ref|ZP_18708615.1| DNA polymerase III, beta subunit [Escherichia coli EC1736]
gi|425325974|ref|ZP_18714297.1| DNA polymerase III, beta subunit [Escherichia coli EC1737]
gi|425332292|ref|ZP_18720102.1| DNA polymerase III, beta subunit [Escherichia coli EC1846]
gi|425338472|ref|ZP_18725803.1| DNA polymerase III, beta subunit [Escherichia coli EC1847]
gi|425344775|ref|ZP_18731651.1| DNA polymerase III, beta subunit [Escherichia coli EC1848]
gi|425350613|ref|ZP_18737061.1| DNA polymerase III, beta subunit [Escherichia coli EC1849]
gi|425356885|ref|ZP_18742934.1| DNA polymerase III, beta subunit [Escherichia coli EC1850]
gi|425362839|ref|ZP_18748472.1| DNA polymerase III, beta subunit [Escherichia coli EC1856]
gi|425369097|ref|ZP_18754170.1| DNA polymerase III, beta subunit [Escherichia coli EC1862]
gi|425375405|ref|ZP_18760030.1| DNA polymerase III, beta subunit [Escherichia coli EC1864]
gi|425382041|ref|ZP_18766024.1| DNA polymerase III, beta subunit [Escherichia coli EC1865]
gi|425388291|ref|ZP_18771835.1| DNA polymerase III, beta subunit [Escherichia coli EC1866]
gi|425394985|ref|ZP_18778079.1| DNA polymerase III, beta subunit [Escherichia coli EC1868]
gi|425401077|ref|ZP_18783768.1| DNA polymerase III, beta subunit [Escherichia coli EC1869]
gi|425407173|ref|ZP_18789379.1| DNA polymerase III, beta subunit [Escherichia coli EC1870]
gi|425413531|ref|ZP_18795278.1| DNA polymerase III, beta subunit [Escherichia coli NE098]
gi|425419844|ref|ZP_18801101.1| DNA polymerase III, beta subunit [Escherichia coli FRIK523]
gi|425424717|ref|ZP_18805865.1| DNA polymerase III, beta subunit [Escherichia coli 0.1288]
gi|425431144|ref|ZP_18811738.1| DNA polymerase III, beta subunit [Escherichia coli 0.1304]
gi|427806902|ref|ZP_18973969.1| DNA polymerase III, beta-subunit [Escherichia coli chi7122]
gi|427811489|ref|ZP_18978554.1| DNA polymerase III, beta-subunit [Escherichia coli]
gi|428949551|ref|ZP_19021809.1| DNA polymerase III, beta subunit [Escherichia coli 88.1467]
gi|428955623|ref|ZP_19027400.1| DNA polymerase III, beta subunit [Escherichia coli 88.1042]
gi|428961640|ref|ZP_19032906.1| DNA polymerase III, beta subunit [Escherichia coli 89.0511]
gi|428968243|ref|ZP_19038935.1| DNA polymerase III, beta subunit [Escherichia coli 90.0091]
gi|428973972|ref|ZP_19044269.1| DNA polymerase III, beta subunit [Escherichia coli 90.0039]
gi|428980432|ref|ZP_19050229.1| DNA polymerase III, beta subunit [Escherichia coli 90.2281]
gi|428986246|ref|ZP_19055621.1| DNA polymerase III, beta subunit [Escherichia coli 93.0055]
gi|428992337|ref|ZP_19061311.1| DNA polymerase III, beta subunit [Escherichia coli 93.0056]
gi|428998232|ref|ZP_19066811.1| DNA polymerase III, beta subunit [Escherichia coli 94.0618]
gi|429004613|ref|ZP_19072663.1| DNA polymerase III, beta subunit [Escherichia coli 95.0183]
gi|429010628|ref|ZP_19078026.1| DNA polymerase III, beta subunit [Escherichia coli 95.1288]
gi|429017123|ref|ZP_19083986.1| DNA polymerase III, beta subunit [Escherichia coli 95.0943]
gi|429022899|ref|ZP_19089402.1| DNA polymerase III, beta subunit [Escherichia coli 96.0428]
gi|429029033|ref|ZP_19095000.1| DNA polymerase III, beta subunit [Escherichia coli 96.0427]
gi|429035189|ref|ZP_19100698.1| DNA polymerase III, beta subunit [Escherichia coli 96.0939]
gi|429041289|ref|ZP_19106366.1| DNA polymerase III, beta subunit [Escherichia coli 96.0932]
gi|429047121|ref|ZP_19111819.1| DNA polymerase III, beta subunit [Escherichia coli 96.0107]
gi|429052476|ref|ZP_19117034.1| DNA polymerase III, beta subunit [Escherichia coli 97.0003]
gi|429058028|ref|ZP_19122279.1| DNA polymerase III, beta subunit [Escherichia coli 97.1742]
gi|429063540|ref|ZP_19127508.1| DNA polymerase III, beta subunit [Escherichia coli 97.0007]
gi|429069743|ref|ZP_19133173.1| DNA polymerase III, beta subunit [Escherichia coli 99.0672]
gi|429075532|ref|ZP_19138776.1| DNA polymerase III, beta subunit [Escherichia coli 99.0678]
gi|429080730|ref|ZP_19143857.1| DNA polymerase III, beta subunit [Escherichia coli 99.0713]
gi|429721453|ref|ZP_19256368.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429773346|ref|ZP_19305361.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-02030]
gi|429778711|ref|ZP_19310677.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-02033-1]
gi|429782546|ref|ZP_19314471.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-02092]
gi|429787939|ref|ZP_19319826.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-02093]
gi|429793758|ref|ZP_19325600.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-02281]
gi|429800338|ref|ZP_19332127.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-02318]
gi|429803950|ref|ZP_19335707.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-02913]
gi|429808598|ref|ZP_19340314.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-03439]
gi|429814297|ref|ZP_19345968.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-04080]
gi|429819500|ref|ZP_19351130.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-03943]
gi|429828950|ref|ZP_19359936.1| DNA polymerase III, beta subunit [Escherichia coli 96.0109]
gi|429835402|ref|ZP_19365649.1| DNA polymerase III, beta subunit [Escherichia coli 97.0010]
gi|429905820|ref|ZP_19371796.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429909953|ref|ZP_19375915.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429915853|ref|ZP_19381799.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429920901|ref|ZP_19386828.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429926709|ref|ZP_19392620.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429930641|ref|ZP_19396540.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429937183|ref|ZP_19403068.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429942861|ref|ZP_19408733.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429945540|ref|ZP_19411400.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429953103|ref|ZP_19418948.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429956450|ref|ZP_19422280.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432355748|ref|ZP_19599009.1| DNA polymerase III subunit beta [Escherichia coli KTE2]
gi|432360168|ref|ZP_19603380.1| DNA polymerase III subunit beta [Escherichia coli KTE4]
gi|432364968|ref|ZP_19608122.1| DNA polymerase III subunit beta [Escherichia coli KTE5]
gi|432367187|ref|ZP_19610301.1| DNA polymerase III subunit beta [Escherichia coli KTE10]
gi|432378938|ref|ZP_19621919.1| DNA polymerase III subunit beta [Escherichia coli KTE12]
gi|432383611|ref|ZP_19626536.1| DNA polymerase III subunit beta [Escherichia coli KTE15]
gi|432389519|ref|ZP_19632398.1| DNA polymerase III subunit beta [Escherichia coli KTE16]
gi|432394384|ref|ZP_19637202.1| DNA polymerase III subunit beta [Escherichia coli KTE21]
gi|432399661|ref|ZP_19642434.1| DNA polymerase III subunit beta [Escherichia coli KTE25]
gi|432404115|ref|ZP_19646858.1| DNA polymerase III subunit beta [Escherichia coli KTE26]
gi|432408784|ref|ZP_19651486.1| DNA polymerase III subunit beta [Escherichia coli KTE28]
gi|432413979|ref|ZP_19656632.1| DNA polymerase III subunit beta [Escherichia coli KTE39]
gi|432419237|ref|ZP_19661828.1| DNA polymerase III subunit beta [Escherichia coli KTE44]
gi|432424118|ref|ZP_19666655.1| DNA polymerase III subunit beta [Escherichia coli KTE178]
gi|432428383|ref|ZP_19670863.1| DNA polymerase III subunit beta [Escherichia coli KTE181]
gi|432433939|ref|ZP_19676362.1| DNA polymerase III subunit beta [Escherichia coli KTE187]
gi|432438671|ref|ZP_19681048.1| DNA polymerase III subunit beta [Escherichia coli KTE188]
gi|432443246|ref|ZP_19685579.1| DNA polymerase III subunit beta [Escherichia coli KTE189]
gi|432448391|ref|ZP_19690686.1| DNA polymerase III subunit beta [Escherichia coli KTE191]
gi|432451974|ref|ZP_19694228.1| DNA polymerase III subunit beta [Escherichia coli KTE193]
gi|432458857|ref|ZP_19701031.1| DNA polymerase III subunit beta [Escherichia coli KTE201]
gi|432463082|ref|ZP_19705213.1| DNA polymerase III subunit beta [Escherichia coli KTE204]
gi|432468032|ref|ZP_19710109.1| DNA polymerase III subunit beta [Escherichia coli KTE205]
gi|432473067|ref|ZP_19715103.1| DNA polymerase III subunit beta [Escherichia coli KTE206]
gi|432478077|ref|ZP_19720062.1| DNA polymerase III subunit beta [Escherichia coli KTE208]
gi|432483124|ref|ZP_19725071.1| DNA polymerase III subunit beta [Escherichia coli KTE210]
gi|432487469|ref|ZP_19729375.1| DNA polymerase III subunit beta [Escherichia coli KTE212]
gi|432491542|ref|ZP_19733401.1| DNA polymerase III subunit beta [Escherichia coli KTE213]
gi|432497851|ref|ZP_19739642.1| DNA polymerase III subunit beta [Escherichia coli KTE214]
gi|432502269|ref|ZP_19744019.1| DNA polymerase III subunit beta [Escherichia coli KTE216]
gi|432506607|ref|ZP_19748325.1| DNA polymerase III subunit beta [Escherichia coli KTE220]
gi|432516103|ref|ZP_19753318.1| DNA polymerase III subunit beta [Escherichia coli KTE224]
gi|432519931|ref|ZP_19757110.1| DNA polymerase III subunit beta [Escherichia coli KTE228]
gi|432526188|ref|ZP_19763300.1| DNA polymerase III subunit beta [Escherichia coli KTE230]
gi|432528564|ref|ZP_19765635.1| DNA polymerase III subunit beta [Escherichia coli KTE233]
gi|432536114|ref|ZP_19773069.1| DNA polymerase III subunit beta [Escherichia coli KTE234]
gi|432540098|ref|ZP_19776988.1| DNA polymerase III subunit beta [Escherichia coli KTE235]
gi|432545552|ref|ZP_19782375.1| DNA polymerase III subunit beta [Escherichia coli KTE236]
gi|432551031|ref|ZP_19787780.1| DNA polymerase III subunit beta [Escherichia coli KTE237]
gi|432555795|ref|ZP_19792512.1| DNA polymerase III subunit beta [Escherichia coli KTE47]
gi|432560980|ref|ZP_19797633.1| DNA polymerase III subunit beta [Escherichia coli KTE49]
gi|432566093|ref|ZP_19802649.1| DNA polymerase III subunit beta [Escherichia coli KTE51]
gi|432570989|ref|ZP_19807494.1| DNA polymerase III subunit beta [Escherichia coli KTE53]
gi|432575956|ref|ZP_19812425.1| DNA polymerase III subunit beta [Escherichia coli KTE55]
gi|432577981|ref|ZP_19814427.1| DNA polymerase III subunit beta [Escherichia coli KTE56]
gi|432585242|ref|ZP_19821633.1| DNA polymerase III subunit beta [Escherichia coli KTE57]
gi|432590167|ref|ZP_19826518.1| DNA polymerase III subunit beta [Escherichia coli KTE58]
gi|432594928|ref|ZP_19831239.1| DNA polymerase III subunit beta [Escherichia coli KTE60]
gi|432599971|ref|ZP_19836240.1| DNA polymerase III subunit beta [Escherichia coli KTE62]
gi|432604548|ref|ZP_19840775.1| DNA polymerase III subunit beta [Escherichia coli KTE66]
gi|432605153|ref|ZP_19841362.1| DNA polymerase III subunit beta [Escherichia coli KTE67]
gi|432613717|ref|ZP_19849874.1| DNA polymerase III subunit beta [Escherichia coli KTE72]
gi|432619025|ref|ZP_19855122.1| DNA polymerase III subunit beta [Escherichia coli KTE75]
gi|432624088|ref|ZP_19860100.1| DNA polymerase III subunit beta [Escherichia coli KTE76]
gi|432629336|ref|ZP_19865301.1| DNA polymerase III subunit beta [Escherichia coli KTE77]
gi|432633663|ref|ZP_19869580.1| DNA polymerase III subunit beta [Escherichia coli KTE80]
gi|432638932|ref|ZP_19874795.1| DNA polymerase III subunit beta [Escherichia coli KTE81]
gi|432643315|ref|ZP_19879136.1| DNA polymerase III subunit beta [Escherichia coli KTE83]
gi|432648385|ref|ZP_19884170.1| DNA polymerase III subunit beta [Escherichia coli KTE86]
gi|432653370|ref|ZP_19889106.1| DNA polymerase III subunit beta [Escherichia coli KTE87]
gi|432657950|ref|ZP_19893646.1| DNA polymerase III subunit beta [Escherichia coli KTE93]
gi|432662962|ref|ZP_19898590.1| DNA polymerase III subunit beta [Escherichia coli KTE111]
gi|432668308|ref|ZP_19903877.1| DNA polymerase III subunit beta [Escherichia coli KTE116]
gi|432672805|ref|ZP_19908323.1| DNA polymerase III subunit beta [Escherichia coli KTE119]
gi|432676876|ref|ZP_19912318.1| DNA polymerase III subunit beta [Escherichia coli KTE142]
gi|432682369|ref|ZP_19917725.1| DNA polymerase III subunit beta [Escherichia coli KTE143]
gi|432687544|ref|ZP_19922832.1| DNA polymerase III subunit beta [Escherichia coli KTE156]
gi|432689040|ref|ZP_19924306.1| DNA polymerase III subunit beta [Escherichia coli KTE161]
gi|432696579|ref|ZP_19931770.1| DNA polymerase III subunit beta [Escherichia coli KTE162]
gi|432701229|ref|ZP_19936373.1| DNA polymerase III subunit beta [Escherichia coli KTE169]
gi|432706445|ref|ZP_19941539.1| DNA polymerase III subunit beta [Escherichia coli KTE171]
gi|432708109|ref|ZP_19943183.1| DNA polymerase III subunit beta [Escherichia coli KTE6]
gi|432715574|ref|ZP_19950598.1| DNA polymerase III subunit beta [Escherichia coli KTE8]
gi|432720867|ref|ZP_19955824.1| DNA polymerase III subunit beta [Escherichia coli KTE9]
gi|432725179|ref|ZP_19960092.1| DNA polymerase III subunit beta [Escherichia coli KTE17]
gi|432729787|ref|ZP_19964660.1| DNA polymerase III subunit beta [Escherichia coli KTE18]
gi|432734469|ref|ZP_19969291.1| DNA polymerase III subunit beta [Escherichia coli KTE45]
gi|432739209|ref|ZP_19973937.1| DNA polymerase III subunit beta [Escherichia coli KTE42]
gi|432743476|ref|ZP_19978190.1| DNA polymerase III subunit beta [Escherichia coli KTE23]
gi|432747689|ref|ZP_19982350.1| DNA polymerase III subunit beta [Escherichia coli KTE43]
gi|432756671|ref|ZP_19991214.1| DNA polymerase III subunit beta [Escherichia coli KTE22]
gi|432761554|ref|ZP_19996042.1| DNA polymerase III subunit beta [Escherichia coli KTE46]
gi|432767137|ref|ZP_20001550.1| DNA polymerase III subunit beta [Escherichia coli KTE48]
gi|432768089|ref|ZP_20002478.1| DNA polymerase III subunit beta [Escherichia coli KTE50]
gi|432772490|ref|ZP_20006801.1| DNA polymerase III subunit beta [Escherichia coli KTE54]
gi|432780748|ref|ZP_20014967.1| DNA polymerase III subunit beta [Escherichia coli KTE59]
gi|432785701|ref|ZP_20019877.1| DNA polymerase III subunit beta [Escherichia coli KTE63]
gi|432789740|ref|ZP_20023866.1| DNA polymerase III subunit beta [Escherichia coli KTE65]
gi|432794977|ref|ZP_20029049.1| DNA polymerase III subunit beta [Escherichia coli KTE78]
gi|432796488|ref|ZP_20030522.1| DNA polymerase III subunit beta [Escherichia coli KTE79]
gi|432803949|ref|ZP_20037899.1| DNA polymerase III subunit beta [Escherichia coli KTE84]
gi|432811453|ref|ZP_20045309.1| DNA polymerase III subunit beta [Escherichia coli KTE101]
gi|432817507|ref|ZP_20051258.1| DNA polymerase III subunit beta [Escherichia coli KTE115]
gi|432823176|ref|ZP_20056863.1| DNA polymerase III subunit beta [Escherichia coli KTE118]
gi|432824636|ref|ZP_20058299.1| DNA polymerase III subunit beta [Escherichia coli KTE123]
gi|432829326|ref|ZP_20062941.1| DNA polymerase III subunit beta [Escherichia coli KTE135]
gi|432836700|ref|ZP_20070229.1| DNA polymerase III subunit beta [Escherichia coli KTE136]
gi|432841567|ref|ZP_20075022.1| DNA polymerase III subunit beta [Escherichia coli KTE140]
gi|432846844|ref|ZP_20079447.1| DNA polymerase III subunit beta [Escherichia coli KTE141]
gi|432855724|ref|ZP_20083415.1| DNA polymerase III subunit beta [Escherichia coli KTE144]
gi|432866472|ref|ZP_20088933.1| DNA polymerase III subunit beta [Escherichia coli KTE146]
gi|432871471|ref|ZP_20091641.1| DNA polymerase III subunit beta [Escherichia coli KTE147]
gi|432878082|ref|ZP_20095531.1| DNA polymerase III subunit beta [Escherichia coli KTE154]
gi|432889450|ref|ZP_20102787.1| DNA polymerase III subunit beta [Escherichia coli KTE158]
gi|432901273|ref|ZP_20111385.1| DNA polymerase III subunit beta [Escherichia coli KTE192]
gi|432907484|ref|ZP_20115921.1| DNA polymerase III subunit beta [Escherichia coli KTE194]
gi|432915385|ref|ZP_20120640.1| DNA polymerase III subunit beta [Escherichia coli KTE190]
gi|432922968|ref|ZP_20125691.1| DNA polymerase III subunit beta [Escherichia coli KTE173]
gi|432929577|ref|ZP_20130627.1| DNA polymerase III subunit beta [Escherichia coli KTE175]
gi|432940521|ref|ZP_20138435.1| DNA polymerase III subunit beta [Escherichia coli KTE183]
gi|432950436|ref|ZP_20144708.1| DNA polymerase III subunit beta [Escherichia coli KTE196]
gi|432957668|ref|ZP_20149074.1| DNA polymerase III subunit beta [Escherichia coli KTE197]
gi|432964489|ref|ZP_20153590.1| DNA polymerase III subunit beta [Escherichia coli KTE202]
gi|432965467|ref|ZP_20154390.1| DNA polymerase III subunit beta [Escherichia coli KTE203]
gi|432973987|ref|ZP_20162830.1| DNA polymerase III subunit beta [Escherichia coli KTE207]
gi|432975939|ref|ZP_20164771.1| DNA polymerase III subunit beta [Escherichia coli KTE209]
gi|432983221|ref|ZP_20171988.1| DNA polymerase III subunit beta [Escherichia coli KTE211]
gi|432987560|ref|ZP_20176271.1| DNA polymerase III subunit beta [Escherichia coli KTE215]
gi|432992860|ref|ZP_20181498.1| DNA polymerase III subunit beta [Escherichia coli KTE217]
gi|432997498|ref|ZP_20186078.1| DNA polymerase III subunit beta [Escherichia coli KTE218]
gi|433002094|ref|ZP_20190611.1| DNA polymerase III subunit beta [Escherichia coli KTE223]
gi|433002614|ref|ZP_20191123.1| DNA polymerase III subunit beta [Escherichia coli KTE227]
gi|433009916|ref|ZP_20198327.1| DNA polymerase III subunit beta [Escherichia coli KTE229]
gi|433016034|ref|ZP_20204361.1| DNA polymerase III subunit beta [Escherichia coli KTE104]
gi|433020971|ref|ZP_20209048.1| DNA polymerase III subunit beta [Escherichia coli KTE105]
gi|433025624|ref|ZP_20213591.1| DNA polymerase III subunit beta [Escherichia coli KTE106]
gi|433030657|ref|ZP_20218503.1| DNA polymerase III subunit beta [Escherichia coli KTE109]
gi|433035635|ref|ZP_20223323.1| DNA polymerase III subunit beta [Escherichia coli KTE112]
gi|433040730|ref|ZP_20228316.1| DNA polymerase III subunit beta [Escherichia coli KTE113]
gi|433045247|ref|ZP_20232720.1| DNA polymerase III subunit beta [Escherichia coli KTE117]
gi|433050175|ref|ZP_20237498.1| DNA polymerase III subunit beta [Escherichia coli KTE120]
gi|433055342|ref|ZP_20242496.1| DNA polymerase III subunit beta [Escherichia coli KTE122]
gi|433060239|ref|ZP_20247270.1| DNA polymerase III subunit beta [Escherichia coli KTE124]
gi|433065182|ref|ZP_20252084.1| DNA polymerase III subunit beta [Escherichia coli KTE125]
gi|433070079|ref|ZP_20256842.1| DNA polymerase III subunit beta [Escherichia coli KTE128]
gi|433074977|ref|ZP_20261614.1| DNA polymerase III subunit beta [Escherichia coli KTE129]
gi|433079914|ref|ZP_20266430.1| DNA polymerase III subunit beta [Escherichia coli KTE131]
gi|433084641|ref|ZP_20271086.1| DNA polymerase III subunit beta [Escherichia coli KTE133]
gi|433089442|ref|ZP_20275800.1| DNA polymerase III subunit beta [Escherichia coli KTE137]
gi|433094104|ref|ZP_20280352.1| DNA polymerase III subunit beta [Escherichia coli KTE138]
gi|433098543|ref|ZP_20284709.1| DNA polymerase III subunit beta [Escherichia coli KTE139]
gi|433103312|ref|ZP_20289381.1| DNA polymerase III subunit beta [Escherichia coli KTE145]
gi|433107972|ref|ZP_20293931.1| DNA polymerase III subunit beta [Escherichia coli KTE148]
gi|433112988|ref|ZP_20298836.1| DNA polymerase III subunit beta [Escherichia coli KTE150]
gi|433117646|ref|ZP_20303425.1| DNA polymerase III subunit beta [Escherichia coli KTE153]
gi|433122331|ref|ZP_20307986.1| DNA polymerase III subunit beta [Escherichia coli KTE157]
gi|433127348|ref|ZP_20312889.1| DNA polymerase III subunit beta [Escherichia coli KTE160]
gi|433132289|ref|ZP_20317710.1| DNA polymerase III subunit beta [Escherichia coli KTE163]
gi|433136963|ref|ZP_20322286.1| DNA polymerase III subunit beta [Escherichia coli KTE166]
gi|433141422|ref|ZP_20326659.1| DNA polymerase III subunit beta [Escherichia coli KTE167]
gi|433146351|ref|ZP_20331481.1| DNA polymerase III subunit beta [Escherichia coli KTE168]
gi|433151374|ref|ZP_20336370.1| DNA polymerase III subunit beta [Escherichia coli KTE174]
gi|433155903|ref|ZP_20340829.1| DNA polymerase III subunit beta [Escherichia coli KTE176]
gi|433160872|ref|ZP_20345686.1| DNA polymerase III subunit beta [Escherichia coli KTE177]
gi|433165732|ref|ZP_20350457.1| DNA polymerase III subunit beta [Escherichia coli KTE179]
gi|433170727|ref|ZP_20355343.1| DNA polymerase III subunit beta [Escherichia coli KTE180]
gi|433175604|ref|ZP_20360107.1| DNA polymerase III subunit beta [Escherichia coli KTE232]
gi|433180589|ref|ZP_20364961.1| DNA polymerase III subunit beta [Escherichia coli KTE82]
gi|433185439|ref|ZP_20369673.1| DNA polymerase III subunit beta [Escherichia coli KTE85]
gi|433190520|ref|ZP_20374606.1| DNA polymerase III subunit beta [Escherichia coli KTE88]
gi|433200480|ref|ZP_20384361.1| DNA polymerase III subunit beta [Escherichia coli KTE94]
gi|433205461|ref|ZP_20389204.1| DNA polymerase III subunit beta [Escherichia coli KTE95]
gi|433209864|ref|ZP_20393527.1| DNA polymerase III subunit beta [Escherichia coli KTE97]
gi|433214743|ref|ZP_20398317.1| DNA polymerase III subunit beta [Escherichia coli KTE99]
gi|433321677|ref|ZP_20399235.1| DNA polymerase III subunit beta [Escherichia coli J96]
gi|442595551|ref|ZP_21013397.1| DNA polymerase III beta subunit [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|442596194|ref|ZP_21014014.1| DNA polymerase III beta subunit [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|442605752|ref|ZP_21020568.1| DNA polymerase III beta subunit [Escherichia coli Nissle 1917]
gi|443619779|ref|YP_007383635.1| DNA polymerase III subunit beta [Escherichia coli APEC O78]
gi|444927442|ref|ZP_21246699.1| DNA polymerase III, beta subunit [Escherichia coli 09BKT078844]
gi|444933049|ref|ZP_21252053.1| DNA polymerase III, beta subunit [Escherichia coli 99.0814]
gi|444938521|ref|ZP_21257249.1| DNA polymerase III, beta subunit [Escherichia coli 99.0815]
gi|444944121|ref|ZP_21262601.1| DNA polymerase III, beta subunit [Escherichia coli 99.0816]
gi|444949534|ref|ZP_21267822.1| DNA polymerase III, beta subunit [Escherichia coli 99.0839]
gi|444955255|ref|ZP_21273316.1| DNA polymerase III, beta subunit [Escherichia coli 99.0848]
gi|444960632|ref|ZP_21278448.1| DNA polymerase III, beta subunit [Escherichia coli 99.1753]
gi|444965859|ref|ZP_21283417.1| DNA polymerase III, beta subunit [Escherichia coli 99.1775]
gi|444971878|ref|ZP_21289213.1| DNA polymerase III, beta subunit [Escherichia coli 99.1793]
gi|444977179|ref|ZP_21294251.1| DNA polymerase III, beta subunit [Escherichia coli 99.1805]
gi|444982522|ref|ZP_21299419.1| DNA polymerase III, beta subunit [Escherichia coli ATCC 700728]
gi|444987931|ref|ZP_21304699.1| DNA polymerase III, beta subunit [Escherichia coli PA11]
gi|444993242|ref|ZP_21309874.1| DNA polymerase III, beta subunit [Escherichia coli PA19]
gi|444998486|ref|ZP_21314976.1| DNA polymerase III, beta subunit [Escherichia coli PA13]
gi|445004033|ref|ZP_21320413.1| DNA polymerase III, beta subunit [Escherichia coli PA2]
gi|445009397|ref|ZP_21325623.1| DNA polymerase III, beta subunit [Escherichia coli PA47]
gi|445014528|ref|ZP_21330624.1| DNA polymerase III, beta subunit [Escherichia coli PA48]
gi|445020450|ref|ZP_21336406.1| DNA polymerase III, beta subunit [Escherichia coli PA8]
gi|445025811|ref|ZP_21341625.1| DNA polymerase III, beta subunit [Escherichia coli 7.1982]
gi|445031266|ref|ZP_21346923.1| DNA polymerase III, beta subunit [Escherichia coli 99.1781]
gi|445036689|ref|ZP_21352207.1| DNA polymerase III, beta subunit [Escherichia coli 99.1762]
gi|445042364|ref|ZP_21357727.1| DNA polymerase III, beta subunit [Escherichia coli PA35]
gi|445047576|ref|ZP_21362814.1| DNA polymerase III, beta subunit [Escherichia coli 3.4880]
gi|445053138|ref|ZP_21368149.1| DNA polymerase III, beta subunit [Escherichia coli 95.0083]
gi|445061180|ref|ZP_21373688.1| DNA polymerase III, beta subunit [Escherichia coli 99.0670]
gi|450195410|ref|ZP_21892479.1| DNA polymerase III subunit beta [Escherichia coli SEPT362]
gi|450225588|ref|ZP_21897429.1| DNA polymerase III subunit beta [Escherichia coli O08]
gi|450252597|ref|ZP_21902183.1| DNA polymerase III subunit beta [Escherichia coli S17]
gi|452967334|ref|ZP_21965561.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str.
EC4009]
gi|71159295|sp|P0A990.1|DPO3B_ECO57 RecName: Full=DNA polymerase III subunit beta
gi|71159296|sp|P0A989.1|DPO3B_ECOL6 RecName: Full=DNA polymerase III subunit beta
gi|71159297|sp|P0A988.1|DPO3B_ECOLI RecName: Full=DNA polymerase III subunit beta
gi|494833|pdb|2POL|A Chain A, Three-Dimensional Structure Of The Beta Subunit Of
Escherichia Coli Dna Polymerase Iii Holoenzyme: A
Sliding Dna Clamp
gi|494834|pdb|2POL|B Chain B, Three-Dimensional Structure Of The Beta Subunit Of
Escherichia Coli Dna Polymerase Iii Holoenzyme: A
Sliding Dna Clamp
gi|34809863|pdb|1MMI|A Chain A, E. Coli Dna Polymerase Beta Subunit
gi|34809864|pdb|1MMI|B Chain B, E. Coli Dna Polymerase Beta Subunit
gi|39654966|pdb|1UNN|A Chain A, Complex Of Beta-Clamp Processivity Factor And Little
Finger Domain Of Poliv
gi|39654967|pdb|1UNN|B Chain B, Complex Of Beta-Clamp Processivity Factor And Little
Finger Domain Of Poliv
gi|51247132|pdb|1OK7|A Chain A, A Conserved Protein Binding-site On Bacterial Sliding
Clamps
gi|51247133|pdb|1OK7|B Chain B, A Conserved Protein Binding-site On Bacterial Sliding
Clamps
gi|166235467|pdb|3BEP|A Chain A, Structure Of A Sliding Clamp On Dna
gi|166235468|pdb|3BEP|B Chain B, Structure Of A Sliding Clamp On Dna
gi|194709177|pdb|3D1E|A Chain A, Crystal Structure Of E. Coli Sliding Clamp (Beta) Bound To
A Polymerase Ii Peptide
gi|194709178|pdb|3D1E|B Chain B, Crystal Structure Of E. Coli Sliding Clamp (Beta) Bound To
A Polymerase Ii Peptide
gi|194709180|pdb|3D1F|A Chain A, Crystal Structure Of E. Coli Sliding Clamp (Beta) Bound To
A Polymerase Iii Peptide
gi|194709181|pdb|3D1F|B Chain B, Crystal Structure Of E. Coli Sliding Clamp (Beta) Bound To
A Polymerase Iii Peptide
gi|194709184|pdb|3D1G|A Chain A, Structure Of A Small Molecule Inhibitor Bound To A Dna
Sliding Clamp
gi|194709185|pdb|3D1G|B Chain B, Structure Of A Small Molecule Inhibitor Bound To A Dna
Sliding Clamp
gi|335892422|pdb|3QSB|A Chain A, Structure Of E. Coli Poliiibeta With
(Z)-5-(1-((4'-Fluorobiphenyl-4-
Yl)methoxyimino)butyl)-2,2-Dimethyl-4,
6-Dioxocyclohexanecarbonitrile
gi|365812983|pdb|3Q4J|A Chain A, Structure Of A Small Peptide Ligand Bound To E.Coli Dna
Sliding Clamp
gi|365812984|pdb|3Q4J|B Chain B, Structure Of A Small Peptide Ligand Bound To E.Coli Dna
Sliding Clamp
gi|365812985|pdb|3Q4J|C Chain C, Structure Of A Small Peptide Ligand Bound To E.Coli Dna
Sliding Clamp
gi|365812986|pdb|3Q4J|D Chain D, Structure Of A Small Peptide Ligand Bound To E.Coli Dna
Sliding Clamp
gi|365812987|pdb|3Q4J|E Chain E, Structure Of A Small Peptide Ligand Bound To E.Coli Dna
Sliding Clamp
gi|365812988|pdb|3Q4J|F Chain F, Structure Of A Small Peptide Ligand Bound To E.Coli Dna
Sliding Clamp
gi|365812994|pdb|3Q4K|A Chain A, Structure Of A Small Peptide Ligand Bound To E.Coli Dna
Sliding Clamp
gi|365812995|pdb|3Q4K|B Chain B, Structure Of A Small Peptide Ligand Bound To E.Coli Dna
Sliding Clamp
gi|12518540|gb|AAG58898.1|AE005601_4 DNA polymerase III, beta-subunit [Escherichia coli O157:H7 str.
EDL933]
gi|26110872|gb|AAN83056.1|AE016769_171 DNA polymerase III, beta chain [Escherichia coli CFT073]
gi|145761|gb|AAB59150.1| DNA polymerase III beta-subunit [Escherichia coli]
gi|290549|gb|AAA62052.1| DNA polymerase III beta-subunit [Escherichia coli]
gi|1790136|gb|AAC76724.1| DNA polymerase III, beta subunit [Escherichia coli str. K-12
substr. MG1655]
gi|13364111|dbj|BAB38059.1| DNA polymerase III beta-subunit [Escherichia coli O157:H7 str.
Sakai]
gi|73857492|gb|AAZ90199.1| DNA polymerase III beta subunit [Shigella sonnei Ss046]
gi|81243378|gb|ABB64088.1| DNA polymerase III, beta-subunit [Shigella dysenteriae Sd197]
gi|81247446|gb|ABB68154.1| DNA polymerase III beta-subunit [Shigella boydii Sb227]
gi|85676343|dbj|BAE77593.1| DNA polymerase III, beta subunit [Escherichia coli str. K12 substr.
W3110]
gi|91074797|gb|ABE09678.1| DNA polymerase III, beta-subunit [Escherichia coli UTI89]
gi|110345636|gb|ABG71873.1| DNA polymerase III, beta chain [Escherichia coli 536]
gi|115515101|gb|ABJ03176.1| DNA polymerase III subunit beta [Escherichia coli APEC O1]
gi|157068861|gb|ABV08116.1| DNA polymerase III, beta subunit [Escherichia coli HS]
gi|157078703|gb|ABV18411.1| DNA polymerase III, beta subunit [Escherichia coli E24377A]
gi|169752991|gb|ACA75690.1| DNA polymerase III, beta subunit [Escherichia coli ATCC 8739]
gi|169891038|gb|ACB04745.1| DNA polymerase III, beta subunit [Escherichia coli str. K-12
substr. DH10B]
gi|170520206|gb|ACB18384.1| DNA polymerase III, beta subunit [Escherichia coli SMS-3-5]
gi|187427319|gb|ACD06593.1| DNA polymerase III, beta subunit [Shigella boydii CDC 3083-94]
gi|187771361|gb|EDU35205.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
EC4196]
gi|188016968|gb|EDU55090.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
EC4113]
gi|188487741|gb|EDU62844.1| DNA polymerase III, beta subunit [Escherichia coli 53638]
gi|189002623|gb|EDU71609.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
EC4076]
gi|189359039|gb|EDU77458.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
EC4401]
gi|189364639|gb|EDU83058.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
EC4486]
gi|189369478|gb|EDU87894.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
EC4501]
gi|189378717|gb|EDU97133.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
EC508]
gi|190904132|gb|EDV63843.1| DNA polymerase III, beta subunit [Escherichia coli B7A]
gi|190909249|gb|EDV68835.1| DNA polymerase III, beta subunit [Escherichia coli F11]
gi|192930502|gb|EDV83109.1| DNA polymerase III, beta subunit [Escherichia coli E22]
gi|194413900|gb|EDX30178.1| DNA polymerase III, beta subunit [Escherichia coli B171]
gi|194420778|gb|EDX36854.1| DNA polymerase III, beta subunit [Shigella dysenteriae 1012]
gi|194425455|gb|EDX41439.1| DNA polymerase III, beta subunit [Escherichia coli 101-1]
gi|208727083|gb|EDZ76684.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
EC4206]
gi|208734494|gb|EDZ83181.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
EC4045]
gi|208740619|gb|EDZ88301.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
EC4042]
gi|209161837|gb|ACI39270.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
EC4115]
gi|209754118|gb|ACI75366.1| replication initiation protein DnaA [Escherichia coli]
gi|209754120|gb|ACI75367.1| replication initiation protein DnaA [Escherichia coli]
gi|209754122|gb|ACI75368.1| replication initiation protein DnaA [Escherichia coli]
gi|209754124|gb|ACI75369.1| replication initiation protein DnaA [Escherichia coli]
gi|209754126|gb|ACI75370.1| replication initiation protein DnaA [Escherichia coli]
gi|209914437|dbj|BAG79511.1| DNA polymerase III beta subunit [Escherichia coli SE11]
gi|217320369|gb|EEC28793.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
TW14588]
gi|218354155|emb|CAV00755.1| DNA polymerase III, beta subunit [Escherichia coli 55989]
gi|218358773|emb|CAQ91430.1| DNA polymerase III, beta subunit [Escherichia fergusonii ATCC
35469]
gi|218363035|emb|CAR00674.1| DNA polymerase III, beta subunit [Escherichia coli IAI1]
gi|218367545|emb|CAR05330.1| DNA polymerase III, beta subunit [Escherichia coli S88]
gi|218372536|emb|CAR20411.1| DNA polymerase III, beta subunit [Escherichia coli IAI39]
gi|218429553|emb|CAR10376.1| DNA polymerase III, beta subunit [Escherichia coli ED1a]
gi|218434444|emb|CAR15372.1| DNA polymerase III, beta subunit [Escherichia coli UMN026]
gi|222035415|emb|CAP78160.1| DNA polymerase III subunit beta [Escherichia coli LF82]
gi|226838883|gb|EEH70910.1| DNA polymerase III subunit beta [Escherichia sp. 1_1_43]
gi|226902765|gb|EEH89024.1| DNA polymerase III subunit beta [Escherichia sp. 3_2_53FAA]
gi|227839200|gb|EEJ49666.1| DNA-directed DNA polymerase [Escherichia coli 83972]
gi|238860831|gb|ACR62829.1| DNA polymerase III, beta subunit [Escherichia coli BW2952]
gi|242379240|emb|CAQ34045.1| dnaN, subunit of DNA polymerase III, beta subunit and DNA
polymerase III, holoenzyme [Escherichia coli BL21(DE3)]
gi|253322481|gb|ACT27083.1| DNA polymerase III, beta subunit [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253975553|gb|ACT41224.1| DNA polymerase III subunit beta [Escherichia coli B str. REL606]
gi|253979709|gb|ACT45379.1| DNA polymerase III subunit beta [Escherichia coli BL21(DE3)]
gi|254595104|gb|ACT74465.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
TW14359]
gi|257756537|dbj|BAI28039.1| DNA polymerase III, beta subunit [Escherichia coli O26:H11 str.
11368]
gi|257761661|dbj|BAI33158.1| DNA polymerase III, beta subunit [Escherichia coli O103:H2 str.
12009]
gi|257766788|dbj|BAI38283.1| DNA polymerase III, beta subunit [Escherichia coli O111:H- str.
11128]
gi|260447281|gb|ACX37703.1| DNA polymerase III, beta subunit [Escherichia coli DH1]
gi|281180755|dbj|BAI57085.1| DNA polymerase III beta subunit [Escherichia coli SE15]
gi|290764993|gb|ADD58954.1| DNA polymerase III subunit beta [Escherichia coli O55:H7 str.
CB9615]
gi|291425632|gb|EFE98668.1| DNA polymerase III subunit beta [Escherichia coli FVEC1412]
gi|291431205|gb|EFF04198.1| DNA polymerase III [Escherichia coli B185]
gi|291468288|gb|EFF10783.1| DNA polymerase III [Escherichia coli B354]
gi|294492870|gb|ADE91626.1| DNA polymerase III, beta subunit [Escherichia coli IHE3034]
gi|298276918|gb|EFI18436.1| DNA polymerase III subunit beta [Escherichia coli FVEC1302]
gi|299878456|gb|EFI86667.1| DNA polymerase III, beta subunit [Escherichia coli MS 196-1]
gi|300300579|gb|EFJ56964.1| DNA polymerase III, beta subunit [Escherichia coli MS 185-1]
gi|300306875|gb|EFJ61395.1| DNA polymerase III, beta subunit [Escherichia coli MS 200-1]
gi|300316880|gb|EFJ66664.1| DNA polymerase III, beta subunit [Escherichia coli MS 175-1]
gi|300360090|gb|EFJ75960.1| DNA polymerase III, beta subunit [Escherichia coli MS 198-1]
gi|300398377|gb|EFJ81915.1| DNA polymerase III, beta subunit [Escherichia coli MS 69-1]
gi|300404930|gb|EFJ88468.1| DNA polymerase III, beta subunit [Escherichia coli MS 84-1]
gi|300408374|gb|EFJ91912.1| DNA polymerase III, beta subunit [Escherichia coli MS 45-1]
gi|300415273|gb|EFJ98583.1| DNA polymerase III, beta subunit [Escherichia coli MS 115-1]
gi|300418365|gb|EFK01676.1| DNA polymerase III, beta subunit [Escherichia coli MS 182-1]
gi|300452875|gb|EFK16495.1| DNA polymerase III, beta subunit [Escherichia coli MS 116-1]
gi|300454367|gb|EFK17860.1| DNA polymerase III, beta subunit [Escherichia coli MS 21-1]
gi|300459918|gb|EFK23411.1| DNA polymerase III, beta subunit [Escherichia coli MS 187-1]
gi|300523201|gb|EFK44270.1| DNA polymerase III, beta subunit [Escherichia coli MS 119-7]
gi|300838804|gb|EFK66564.1| DNA polymerase III, beta subunit [Escherichia coli MS 124-1]
gi|300848101|gb|EFK75861.1| DNA polymerase III, beta subunit [Escherichia coli MS 78-1]
gi|301077314|gb|EFK92120.1| DNA polymerase III, beta subunit [Escherichia coli MS 146-1]
gi|305850342|gb|EFM50799.1| DNA polymerase III subunit beta [Escherichia coli NC101]
gi|306906913|gb|EFN37422.1| DNA polymerase III, beta subunit [Escherichia coli W]
gi|307555841|gb|ADN48616.1| DNA polymerase III, beta-subunit [Escherichia coli ABU 83972]
gi|307628777|gb|ADN73081.1| DNA polymerase III subunit beta [Escherichia coli UM146]
gi|308120629|gb|EFO57891.1| DNA polymerase III, beta subunit [Escherichia coli MS 145-7]
gi|308927756|gb|EFP73224.1| DNA polymerase III, beta subunit [Shigella dysenteriae 1617]
gi|309704148|emb|CBJ03495.1| DNA polymerase III beta-subunit [Escherichia coli ETEC H10407]
gi|310334384|gb|EFQ00589.1| DNA polymerase III, beta subunit [Escherichia coli 1827-70]
gi|312948268|gb|ADR29095.1| DNA polymerase III subunit beta [Escherichia coli O83:H1 str. NRG
857C]
gi|315063007|gb|ADT77334.1| DNA polymerase III, beta subunit [Escherichia coli W]
gi|315138285|dbj|BAJ45444.1| DNA polymerase III subunit beta [Escherichia coli DH1]
gi|315254612|gb|EFU34580.1| DNA polymerase III, beta subunit [Escherichia coli MS 85-1]
gi|315285494|gb|EFU44939.1| DNA polymerase III, beta subunit [Escherichia coli MS 110-3]
gi|315292859|gb|EFU52211.1| DNA polymerase III, beta subunit [Escherichia coli MS 153-1]
gi|315296899|gb|EFU56187.1| DNA polymerase III, beta subunit [Escherichia coli MS 16-3]
gi|315618593|gb|EFU99179.1| DNA polymerase III, beta subunit [Escherichia coli 3431]
gi|320174825|gb|EFW49948.1| DNA polymerase III beta subunit [Shigella dysenteriae CDC 74-1112]
gi|320180042|gb|EFW54984.1| DNA polymerase III beta subunit [Shigella boydii ATCC 9905]
gi|320185534|gb|EFW60300.1| DNA polymerase III beta subunit [Shigella flexneri CDC 796-83]
gi|320191199|gb|EFW65849.1| DNA polymerase III beta subunit [Escherichia coli O157:H7 str.
EC1212]
gi|320193753|gb|EFW68386.1| DNA polymerase III beta subunit [Escherichia coli WV_060327]
gi|320201271|gb|EFW75852.1| DNA polymerase III beta subunit [Escherichia coli EC4100B]
gi|320639426|gb|EFX09041.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str.
G5101]
gi|320644869|gb|EFX13905.1| DNA polymerase III subunit beta [Escherichia coli O157:H- str.
493-89]
gi|320650133|gb|EFX18629.1| DNA polymerase III subunit beta [Escherichia coli O157:H- str. H
2687]
gi|320655481|gb|EFX23416.1| DNA polymerase III subunit beta [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320661107|gb|EFX28543.1| DNA polymerase III subunit beta [Escherichia coli O55:H7 str. USDA
5905]
gi|320666233|gb|EFX33239.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str.
LSU-61]
gi|323155377|gb|EFZ41560.1| DNA polymerase III, beta subunit [Escherichia coli EPECa14]
gi|323161047|gb|EFZ46966.1| DNA polymerase III, beta subunit [Escherichia coli E128010]
gi|323164687|gb|EFZ50482.1| DNA polymerase III, beta subunit [Shigella sonnei 53G]
gi|323173319|gb|EFZ58948.1| DNA polymerase III, beta subunit [Escherichia coli LT-68]
gi|323177713|gb|EFZ63297.1| DNA polymerase III, beta subunit [Escherichia coli OK1180]
gi|323182496|gb|EFZ67900.1| DNA polymerase III, beta subunit [Escherichia coli OK1357]
gi|323189564|gb|EFZ74844.1| DNA polymerase III, beta subunit [Escherichia coli RN587/1]
gi|323376399|gb|ADX48667.1| DNA polymerase III, beta subunit [Escherichia coli KO11FL]
gi|323934948|gb|EGB31326.1| DNA polymerase III [Escherichia coli E1520]
gi|323949944|gb|EGB45828.1| DNA polymerase III [Escherichia coli H252]
gi|323955005|gb|EGB50783.1| DNA polymerase III [Escherichia coli H263]
gi|323959766|gb|EGB55416.1| DNA polymerase III [Escherichia coli H489]
gi|323965762|gb|EGB61213.1| DNA polymerase III [Escherichia coli M863]
gi|323971178|gb|EGB66424.1| DNA polymerase III [Escherichia coli TA007]
gi|323975232|gb|EGB70336.1| DNA polymerase III [Escherichia coli TW10509]
gi|324008037|gb|EGB77256.1| DNA polymerase III, beta subunit [Escherichia coli MS 57-2]
gi|324012738|gb|EGB81957.1| DNA polymerase III, beta subunit [Escherichia coli MS 60-1]
gi|324018431|gb|EGB87650.1| DNA polymerase III, beta subunit [Escherichia coli MS 117-3]
gi|324115947|gb|EGC09873.1| DNA polymerase III [Escherichia coli E1167]
gi|326337250|gb|EGD61085.1| DNA polymerase III beta subunit [Escherichia coli O157:H7 str.
1044]
gi|326341621|gb|EGD65410.1| DNA polymerase III beta subunit [Escherichia coli O157:H7 str.
1125]
gi|327250844|gb|EGE62546.1| DNA polymerase III, beta subunit [Escherichia coli STEC_7v]
gi|331036719|gb|EGI08945.1| DNA polymerase III, beta subunit [Escherichia coli H736]
gi|331042025|gb|EGI14169.1| DNA polymerase III, beta subunit [Escherichia coli M605]
gi|331047376|gb|EGI19454.1| DNA polymerase III, beta subunit [Escherichia coli M718]
gi|331053258|gb|EGI25291.1| DNA polymerase III, beta subunit [Escherichia coli TA206]
gi|331057861|gb|EGI29847.1| DNA polymerase III, beta subunit [Escherichia coli TA143]
gi|331062607|gb|EGI34527.1| DNA polymerase III, beta subunit [Escherichia coli TA271]
gi|331067636|gb|EGI39038.1| DNA polymerase III, beta subunit [Escherichia coli TA280]
gi|331072971|gb|EGI44296.1| DNA polymerase III, beta subunit [Escherichia coli H591]
gi|331077796|gb|EGI49008.1| DNA polymerase III, beta subunit [Escherichia coli H299]
gi|332084052|gb|EGI89259.1| DNA polymerase III, beta subunit [Shigella dysenteriae 155-74]
gi|332084891|gb|EGI90074.1| DNA polymerase III, beta subunit [Shigella boydii 5216-82]
gi|332089554|gb|EGI94658.1| DNA polymerase III, beta subunit [Shigella boydii 3594-74]
gi|332104864|gb|EGJ08210.1| DNA polymerase III subunit beta [Shigella sp. D9]
gi|332345692|gb|AEE59026.1| DNA polymerase III, beta subunit DnaN [Escherichia coli UMNK88]
gi|333971887|gb|AEG38692.1| DNA polymerase III beta subunit [Escherichia coli NA114]
gi|339417434|gb|AEJ59106.1| DNA polymerase III, beta subunit [Escherichia coli UMNF18]
gi|340732355|gb|EGR61493.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
01-09591]
gi|340738112|gb|EGR72363.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
LB226692]
gi|342362079|gb|EGU26204.1| DNA polymerase III subunit beta [Escherichia coli XH140A]
gi|344193912|gb|EGV47989.1| DNA polymerase III subunit beta [Escherichia coli XH001]
gi|345331273|gb|EGW63733.1| DNA polymerase III, beta subunit [Escherichia coli 2534-86]
gi|345331850|gb|EGW64309.1| DNA polymerase III, beta subunit [Escherichia coli STEC_C165-02]
gi|345334390|gb|EGW66834.1| DNA polymerase III, beta subunit [Escherichia coli STEC_B2F1]
gi|345347131|gb|EGW79445.1| DNA polymerase III, beta subunit [Escherichia coli STEC_94C]
gi|345348638|gb|EGW80931.1| DNA polymerase III, beta subunit [Escherichia coli 3030-1]
gi|345353635|gb|EGW85866.1| DNA polymerase III, beta subunit [Escherichia coli STEC_DG131-3]
gi|345357893|gb|EGW90082.1| DNA polymerase III, beta subunit [Escherichia coli STEC_EH250]
gi|345369595|gb|EGX01577.1| DNA polymerase III, beta subunit [Escherichia coli G58-1]
gi|345370428|gb|EGX02406.1| DNA polymerase III, beta subunit [Escherichia coli STEC_MHI813]
gi|345373070|gb|EGX05032.1| DNA polymerase III, beta subunit [Escherichia coli STEC_H.1.8]
gi|345384933|gb|EGX14785.1| DNA polymerase III, beta subunit [Escherichia coli STEC_S1191]
gi|345390615|gb|EGX20413.1| DNA polymerase III, beta subunit [Escherichia coli TX1999]
gi|349740339|gb|AEQ15045.1| DNA polymerase III, beta subunit [Escherichia coli O7:K1 str. CE10]
gi|354857488|gb|EHF17942.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
C236-11]
gi|354861040|gb|EHF21480.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
C227-11]
gi|354863506|gb|EHF23939.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
04-8351]
gi|354871543|gb|EHF31941.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
09-7901]
gi|354876297|gb|EHF36658.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-3677]
gi|354885424|gb|EHF45722.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-4404]
gi|354889242|gb|EHF49494.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-4522]
gi|354892585|gb|EHF52793.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-4623]
gi|354904662|gb|EHF64752.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354908450|gb|EHF68505.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354910351|gb|EHF70378.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354912440|gb|EHF72440.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-4632 C4]
gi|354920611|gb|EHF80544.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-4632 C5]
gi|355422544|gb|AER86741.1| DNA polymerase III subunit beta [Escherichia coli str. 'clone D
i2']
gi|355427464|gb|AER91660.1| DNA polymerase III subunit beta [Escherichia coli str. 'clone D
i14']
gi|359333845|dbj|BAL40292.1| DNA polymerase III, beta subunit [Escherichia coli str. K-12
substr. MDS42]
gi|371592603|gb|EHN81500.1| DNA polymerase III subunit beta [Escherichia coli H494]
gi|371593868|gb|EHN82743.1| DNA polymerase III subunit beta [Escherichia coli TA124]
gi|371602575|gb|EHN91268.1| DNA polymerase III subunit beta [Escherichia coli B093]
gi|371604067|gb|EHN92701.1| DNA polymerase III subunit beta [Escherichia coli H397]
gi|371610168|gb|EHN98699.1| DNA polymerase III subunit beta [Escherichia coli E101]
gi|373243891|gb|EHP63387.1| DNA polymerase III subunit beta [Escherichia coli 4_1_47FAA]
gi|374361154|gb|AEZ42861.1| DNA polymerase III subunit beta [Escherichia coli O55:H7 str.
RM12579]
gi|377889307|gb|EHU53773.1| DNA polymerase III, beta subunit [Escherichia coli DEC3A]
gi|377889966|gb|EHU54425.1| DNA polymerase III, beta subunit [Escherichia coli DEC3B]
gi|377902757|gb|EHU67060.1| DNA polymerase III, beta subunit [Escherichia coli DEC3C]
gi|377905671|gb|EHU69932.1| DNA polymerase III, beta subunit [Escherichia coli DEC3D]
gi|377907025|gb|EHU71262.1| DNA polymerase III, beta subunit [Escherichia coli DEC3E]
gi|377917424|gb|EHU81485.1| DNA polymerase III, beta subunit [Escherichia coli DEC3F]
gi|377923179|gb|EHU87147.1| DNA polymerase III, beta subunit [Escherichia coli DEC4A]
gi|377927949|gb|EHU91864.1| DNA polymerase III, beta subunit [Escherichia coli DEC4B]
gi|377937422|gb|EHV01199.1| DNA polymerase III, beta subunit [Escherichia coli DEC4D]
gi|377938043|gb|EHV01812.1| DNA polymerase III, beta subunit [Escherichia coli DEC4C]
gi|377944294|gb|EHV07999.1| DNA polymerase III, beta subunit [Escherichia coli DEC4E]
gi|377954825|gb|EHV18384.1| DNA polymerase III, beta subunit [Escherichia coli DEC4F]
gi|377957589|gb|EHV21120.1| DNA polymerase III, beta subunit [Escherichia coli DEC5A]
gi|377961829|gb|EHV25294.1| DNA polymerase III, beta subunit [Escherichia coli DEC5B]
gi|377970058|gb|EHV33430.1| DNA polymerase III, beta subunit [Escherichia coli DEC5C]
gi|377970627|gb|EHV33986.1| DNA polymerase III, beta subunit [Escherichia coli DEC5D]
gi|377981188|gb|EHV44448.1| DNA polymerase III, beta subunit [Escherichia coli DEC5E]
gi|377988980|gb|EHV52150.1| DNA polymerase III, beta subunit [Escherichia coli DEC6B]
gi|377989249|gb|EHV52417.1| DNA polymerase III, beta subunit [Escherichia coli DEC6A]
gi|377993291|gb|EHV56429.1| DNA polymerase III, beta subunit [Escherichia coli DEC6C]
gi|378004086|gb|EHV67117.1| DNA polymerase III, beta subunit [Escherichia coli DEC6D]
gi|378006865|gb|EHV69838.1| DNA polymerase III, beta subunit [Escherichia coli DEC6E]
gi|378011370|gb|EHV74314.1| DNA polymerase III, beta subunit [Escherichia coli DEC7A]
gi|378021118|gb|EHV83840.1| DNA polymerase III, beta subunit [Escherichia coli DEC7C]
gi|378024825|gb|EHV87478.1| DNA polymerase III, beta subunit [Escherichia coli DEC7D]
gi|378029384|gb|EHV91996.1| DNA polymerase III, beta subunit [Escherichia coli DEC7B]
gi|378034609|gb|EHV97174.1| DNA polymerase III, beta subunit [Escherichia coli DEC7E]
gi|378043550|gb|EHW05985.1| DNA polymerase III, beta subunit [Escherichia coli DEC8A]
gi|378043800|gb|EHW06230.1| DNA polymerase III, beta subunit [Escherichia coli DEC8B]
gi|378049017|gb|EHW11368.1| DNA polymerase III, beta subunit [Escherichia coli DEC8C]
gi|378060984|gb|EHW23172.1| DNA polymerase III, beta subunit [Escherichia coli DEC8D]
gi|378061590|gb|EHW23774.1| DNA polymerase III, beta subunit [Escherichia coli DEC8E]
gi|378068267|gb|EHW30370.1| DNA polymerase III, beta subunit [Escherichia coli DEC9A]
gi|378073618|gb|EHW35664.1| DNA polymerase III, beta subunit [Escherichia coli DEC9B]
gi|378079325|gb|EHW41302.1| DNA polymerase III, beta subunit [Escherichia coli DEC9C]
gi|378086938|gb|EHW48808.1| DNA polymerase III, beta subunit [Escherichia coli DEC9D]
gi|378089295|gb|EHW51138.1| DNA polymerase III, beta subunit [Escherichia coli DEC9E]
gi|378096283|gb|EHW58054.1| DNA polymerase III, beta subunit [Escherichia coli DEC10A]
gi|378101564|gb|EHW63249.1| DNA polymerase III, beta subunit [Escherichia coli DEC10B]
gi|378106520|gb|EHW68149.1| DNA polymerase III, beta subunit [Escherichia coli DEC10C]
gi|378112628|gb|EHW74202.1| DNA polymerase III, beta subunit [Escherichia coli DEC10D]
gi|378123653|gb|EHW85070.1| DNA polymerase III, beta subunit [Escherichia coli DEC10E]
gi|378124743|gb|EHW86147.1| DNA polymerase III, beta subunit [Escherichia coli DEC10F]
gi|378125368|gb|EHW86769.1| DNA polymerase III, beta subunit [Escherichia coli DEC11A]
gi|378138532|gb|EHW99786.1| DNA polymerase III, beta subunit [Escherichia coli DEC11B]
gi|378144511|gb|EHX05683.1| DNA polymerase III, beta subunit [Escherichia coli DEC11D]
gi|378146639|gb|EHX07790.1| DNA polymerase III, beta subunit [Escherichia coli DEC11C]
gi|378155681|gb|EHX16740.1| DNA polymerase III, beta subunit [Escherichia coli DEC11E]
gi|378160936|gb|EHX21921.1| DNA polymerase III, beta subunit [Escherichia coli DEC12B]
gi|378165341|gb|EHX26277.1| DNA polymerase III, beta subunit [Escherichia coli DEC12A]
gi|378165694|gb|EHX26625.1| DNA polymerase III, beta subunit [Escherichia coli DEC12C]
gi|378179223|gb|EHX39958.1| DNA polymerase III, beta subunit [Escherichia coli DEC12D]
gi|378182629|gb|EHX43279.1| DNA polymerase III, beta subunit [Escherichia coli DEC13A]
gi|378183207|gb|EHX43853.1| DNA polymerase III, beta subunit [Escherichia coli DEC12E]
gi|378195847|gb|EHX56338.1| DNA polymerase III, beta subunit [Escherichia coli DEC13B]
gi|378196125|gb|EHX56615.1| DNA polymerase III, beta subunit [Escherichia coli DEC13C]
gi|378198963|gb|EHX59432.1| DNA polymerase III, beta subunit [Escherichia coli DEC13D]
gi|378209878|gb|EHX70245.1| DNA polymerase III, beta subunit [Escherichia coli DEC13E]
gi|378212032|gb|EHX72359.1| DNA polymerase III, beta subunit [Escherichia coli DEC14A]
gi|378214927|gb|EHX75228.1| DNA polymerase III, beta subunit [Escherichia coli DEC14B]
gi|378224127|gb|EHX84332.1| DNA polymerase III, beta subunit [Escherichia coli DEC14C]
gi|378228108|gb|EHX88274.1| DNA polymerase III, beta subunit [Escherichia coli DEC14D]
gi|378233623|gb|EHX93709.1| DNA polymerase III, beta subunit [Escherichia coli DEC15A]
gi|378240187|gb|EHY00162.1| DNA polymerase III, beta subunit [Escherichia coli DEC15B]
gi|378243168|gb|EHY03115.1| DNA polymerase III, beta subunit [Escherichia coli DEC15C]
gi|378251484|gb|EHY11382.1| DNA polymerase III, beta subunit [Escherichia coli DEC15D]
gi|378256105|gb|EHY15958.1| DNA polymerase III, beta subunit [Escherichia coli DEC15E]
gi|378941865|gb|AFC75895.1| DNA polymerase III beta-subunit [Cloning vector
pANTS-AraLambdaREDdnaAdnaN]
gi|380346376|gb|EIA34671.1| DNA polymerase III subunit beta [Escherichia coli SCI-07]
gi|383105144|gb|AFG42653.1| DNA polymerase III subunit beta [Escherichia coli P12b]
gi|383390736|gb|AFH15694.1| DNA polymerase III subunit beta [Escherichia coli KO11FL]
gi|383407309|gb|AFH13552.1| DNA polymerase III subunit beta [Escherichia coli W]
gi|383476724|gb|EID68659.1| DNA polymerase III subunit beta [Escherichia coli W26]
gi|384381279|gb|EIE39138.1| DNA polymerase III subunit beta [Escherichia coli J53]
gi|384472831|gb|EIE56880.1| DNA polymerase III subunit beta [Escherichia coli AI27]
gi|385156416|gb|EIF18413.1| DNA polymerase III subunit beta [Escherichia coli O32:H37 str. P4]
gi|385537671|gb|EIF84541.1| DNA polymerase III subunit beta [Escherichia coli M919]
gi|385708592|gb|EIG45601.1| DNA polymerase III subunit beta [Escherichia coli H730]
gi|385708929|gb|EIG45931.1| DNA polymerase III subunit beta [Escherichia coli B799]
gi|386120245|gb|EIG68875.1| DNA polymerase III subunit beta [Escherichia sp. 4_1_40B]
gi|386139289|gb|EIG80444.1| DNA polymerase III, beta subunit [Escherichia coli 1.2741]
gi|386145655|gb|EIG92112.1| DNA polymerase III, beta subunit [Escherichia coli 97.0246]
gi|386152844|gb|EIH04133.1| DNA polymerase III, beta subunit [Escherichia coli 5.0588]
gi|386161630|gb|EIH23433.1| DNA polymerase III, beta subunit [Escherichia coli 1.2264]
gi|386166072|gb|EIH32592.1| DNA polymerase III, beta subunit [Escherichia coli 96.0497]
gi|386170233|gb|EIH42293.1| DNA polymerase III, beta subunit [Escherichia coli 99.0741]
gi|386178087|gb|EIH55566.1| DNA polymerase III, beta subunit [Escherichia coli 3.2608]
gi|386182660|gb|EIH65416.1| DNA polymerase III, beta subunit [Escherichia coli 93.0624]
gi|386186684|gb|EIH75507.1| DNA polymerase III, beta subunit [Escherichia coli 4.0522]
gi|386195934|gb|EIH90162.1| DNA polymerase III, beta subunit [Escherichia coli JB1-95]
gi|386202119|gb|EII01110.1| DNA polymerase III, beta subunit [Escherichia coli 96.154]
gi|386207043|gb|EII11548.1| DNA polymerase III, beta subunit [Escherichia coli 5.0959]
gi|386210157|gb|EII20638.1| DNA polymerase III, beta subunit [Escherichia coli 9.0111]
gi|386221793|gb|EII44222.1| DNA polymerase III, beta subunit [Escherichia coli 2.3916]
gi|386227669|gb|EII55025.1| DNA polymerase III, beta subunit [Escherichia coli 3.3884]
gi|386234227|gb|EII66205.1| DNA polymerase III, beta subunit [Escherichia coli 2.4168]
gi|386237998|gb|EII74938.1| DNA polymerase III, beta subunit [Escherichia coli 3.2303]
gi|386245825|gb|EII87555.1| DNA polymerase III, beta subunit [Escherichia coli 3003]
gi|386251022|gb|EII97189.1| DNA polymerase III, beta subunit [Escherichia coli TW07793]
gi|386251935|gb|EIJ01627.1| DNA polymerase III, beta subunit [Escherichia coli B41]
gi|386259514|gb|EIJ14988.1| DNA polymerase III, beta subunit [Escherichia coli 900105 (10e)]
gi|386798390|gb|AFJ31424.1| DNA polymerase III subunit beta [Escherichia coli Xuzhou21]
gi|388333330|gb|EIK99966.1| DNA polymerase III subunit beta [Escherichia coli O103:H25 str.
CVM9340]
gi|388334796|gb|EIL01378.1| DNA polymerase III subunit beta [Escherichia coli O103:H2 str.
CVM9450]
gi|388350863|gb|EIL16179.1| DNA polymerase III subunit beta [Escherichia coli O111:H11 str.
CVM9534]
gi|388353928|gb|EIL18892.1| DNA polymerase III subunit beta [Escherichia coli O111:H8 str.
CVM9574]
gi|388355673|gb|EIL20496.1| DNA polymerase III subunit beta [Escherichia coli O111:H8 str.
CVM9570]
gi|388364966|gb|EIL28780.1| DNA polymerase III subunit beta [Escherichia coli O111:H11 str.
CVM9545]
gi|388370483|gb|EIL34009.1| hypothetical protein ECO10026_26223 [Escherichia coli O26:H11 str.
CVM10026]
gi|388380061|gb|EIL42686.1| DNA polymerase III subunit beta [Escherichia coli O26:H11 str.
CVM9942]
gi|388382948|gb|EIL44761.1| DNA polymerase III subunit beta [Escherichia coli 541-15]
gi|388393447|gb|EIL54828.1| DNA polymerase III subunit beta [Escherichia coli KD2]
gi|388393685|gb|EIL55041.1| DNA polymerase III subunit beta [Escherichia coli KD1]
gi|388403753|gb|EIL64256.1| DNA polymerase III subunit beta [Escherichia coli 541-1]
gi|388404826|gb|EIL65273.1| DNA polymerase III subunit beta [Escherichia coli 75]
gi|388409436|gb|EIL69727.1| DNA polymerase III subunit beta [Escherichia coli 576-1]
gi|388418901|gb|EIL78674.1| DNA polymerase III subunit beta [Escherichia coli CUMT8]
gi|388419954|gb|EIL79659.1| DNA polymerase III subunit beta [Escherichia coli HM605]
gi|390637758|gb|EIN17298.1| DNA polymerase III, beta subunit [Escherichia coli FRIK1996]
gi|390638261|gb|EIN17775.1| DNA polymerase III, beta subunit [Escherichia coli FDA505]
gi|390638937|gb|EIN18426.1| DNA polymerase III, beta subunit [Escherichia coli FDA517]
gi|390656347|gb|EIN34230.1| DNA polymerase III, beta subunit [Escherichia coli FRIK1985]
gi|390656895|gb|EIN34735.1| DNA polymerase III, beta subunit [Escherichia coli 93-001]
gi|390659863|gb|EIN37602.1| DNA polymerase III, beta subunit [Escherichia coli FRIK1990]
gi|390674425|gb|EIN50619.1| DNA polymerase III, beta subunit [Escherichia coli PA3]
gi|390677535|gb|EIN53561.1| DNA polymerase III, beta subunit [Escherichia coli PA5]
gi|390681075|gb|EIN56880.1| DNA polymerase III, beta subunit [Escherichia coli PA9]
gi|390692277|gb|EIN66971.1| DNA polymerase III, beta subunit [Escherichia coli PA10]
gi|390696435|gb|EIN70894.1| DNA polymerase III, beta subunit [Escherichia coli PA14]
gi|390697740|gb|EIN72147.1| DNA polymerase III, beta subunit [Escherichia coli PA15]
gi|390711413|gb|EIN84386.1| DNA polymerase III, beta subunit [Escherichia coli PA22]
gi|390718263|gb|EIN91020.1| DNA polymerase III, beta subunit [Escherichia coli PA24]
gi|390718580|gb|EIN91331.1| DNA polymerase III, beta subunit [Escherichia coli PA25]
gi|390724519|gb|EIN97069.1| DNA polymerase III, beta subunit [Escherichia coli PA28]
gi|390737648|gb|EIO08931.1| DNA polymerase III, beta subunit [Escherichia coli PA31]
gi|390737892|gb|EIO09141.1| DNA polymerase III, beta subunit [Escherichia coli PA32]
gi|390741555|gb|EIO12613.1| DNA polymerase III, beta subunit [Escherichia coli PA33]
gi|390756031|gb|EIO25552.1| DNA polymerase III, beta subunit [Escherichia coli PA40]
gi|390758974|gb|EIO28385.1| DNA polymerase III, beta subunit [Escherichia coli PA39]
gi|390763043|gb|EIO32293.1| DNA polymerase III, beta subunit [Escherichia coli PA41]
gi|390765079|gb|EIO34261.1| DNA polymerase III, beta subunit [Escherichia coli PA42]
gi|390779471|gb|EIO47185.1| DNA polymerase III, beta subunit [Escherichia coli TW06591]
gi|390786193|gb|EIO53716.1| DNA polymerase III, beta subunit [Escherichia coli TW07945]
gi|390787276|gb|EIO54768.1| DNA polymerase III, beta subunit [Escherichia coli TW10246]
gi|390793183|gb|EIO60527.1| DNA polymerase III, beta subunit [Escherichia coli TW11039]
gi|390800352|gb|EIO67444.1| DNA polymerase III, beta subunit [Escherichia coli TW09098]
gi|390805174|gb|EIO72122.1| DNA polymerase III, beta subunit [Escherichia coli TW09109]
gi|390813724|gb|EIO80326.1| DNA polymerase III, beta subunit [Escherichia coli TW10119]
gi|390822515|gb|EIO88630.1| DNA polymerase III, beta subunit [Escherichia coli TW09195]
gi|390822688|gb|EIO88785.1| DNA polymerase III, beta subunit [Escherichia coli EC4203]
gi|390827802|gb|EIO93534.1| DNA polymerase III, beta subunit [Escherichia coli EC4196]
gi|390841189|gb|EIP05158.1| DNA polymerase III, beta subunit [Escherichia coli TW14313]
gi|390843094|gb|EIP06913.1| DNA polymerase III, beta subunit [Escherichia coli TW14301]
gi|390847935|gb|EIP11440.1| DNA polymerase III, beta subunit [Escherichia coli EC4421]
gi|390858423|gb|EIP20815.1| DNA polymerase III, beta subunit [Escherichia coli EC4422]
gi|390862795|gb|EIP24966.1| DNA polymerase III, beta subunit [Escherichia coli EC4013]
gi|390866845|gb|EIP28756.1| DNA polymerase III, beta subunit [Escherichia coli EC4402]
gi|390875249|gb|EIP36312.1| DNA polymerase III, beta subunit [Escherichia coli EC4439]
gi|390880664|gb|EIP41333.1| DNA polymerase III, beta subunit [Escherichia coli EC4436]
gi|390890511|gb|EIP50177.1| DNA polymerase III, beta subunit [Escherichia coli EC4437]
gi|390891987|gb|EIP51595.1| DNA polymerase III, beta subunit [Escherichia coli EC4448]
gi|390897943|gb|EIP57235.1| DNA polymerase III, beta subunit [Escherichia coli EC1738]
gi|390906069|gb|EIP64983.1| DNA polymerase III, beta subunit [Escherichia coli EC1734]
gi|390916070|gb|EIP74558.1| DNA polymerase III, beta subunit [Escherichia coli EC1863]
gi|390916143|gb|EIP74626.1| DNA polymerase III, beta subunit [Escherichia coli EC1845]
gi|391245678|gb|EIQ04945.1| DNA polymerase III, beta subunit [Shigella flexneri CCH060]
gi|391257834|gb|EIQ16942.1| DNA polymerase III, beta subunit [Shigella flexneri K-315]
gi|391272687|gb|EIQ31529.1| DNA polymerase III, beta subunit [Shigella boydii 4444-74]
gi|391275727|gb|EIQ34510.1| DNA polymerase III, beta subunit [Shigella boydii 965-58]
gi|391278254|gb|EIQ36970.1| DNA polymerase III, beta subunit [Shigella sonnei 3226-85]
gi|391281377|gb|EIQ40027.1| DNA polymerase III, beta subunit [Shigella sonnei 3233-85]
gi|391292015|gb|EIQ50370.1| DNA polymerase III, beta subunit [Shigella sonnei 4822-66]
gi|391301729|gb|EIQ59611.1| DNA polymerase III, beta subunit [Escherichia coli EPECa12]
gi|391309925|gb|EIQ67588.1| DNA polymerase III, beta subunit [Escherichia coli EPEC C342-62]
gi|394382817|gb|EJE60433.1| DNA polymerase III subunit beta [Escherichia coli O111:H8 str.
CVM9602]
gi|394384763|gb|EJE62316.1| DNA polymerase III subunit beta [Escherichia coli O111:H8 str.
CVM9634]
gi|394395560|gb|EJE71988.1| DNA polymerase III subunit beta [Escherichia coli O26:H11 str.
CVM10224]
gi|394414386|gb|EJE88331.1| DNA polymerase III subunit beta [Escherichia coli O26:H11 str.
CVM10021]
gi|394415162|gb|EJE89052.1| DNA polymerase III subunit beta [Escherichia coli O26:H11 str.
CVM10030]
gi|394415551|gb|EJE89405.1| DNA polymerase III subunit beta [Escherichia coli O111:H11 str.
CVM9553]
gi|394419899|gb|EJE93468.1| DNA polymerase III subunit beta [Escherichia coli O26:H11 str.
CVM9952]
gi|394422778|gb|EJE96095.1| DNA polymerase III subunit beta [Escherichia coli O111:H11 str.
CVM9455]
gi|397896047|gb|EJL12471.1| DNA polymerase III, beta subunit [Shigella sonnei str. Moseley]
gi|404334927|gb|EJZ61402.1| DNA polymerase III, beta subunit [Shigella flexneri 1485-80]
gi|406775303|gb|AFS54727.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407051886|gb|AFS71937.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
2011C-3493]
gi|407067784|gb|AFS88831.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408061570|gb|EKG96083.1| DNA polymerase III, beta subunit [Escherichia coli PA7]
gi|408062055|gb|EKG96563.1| DNA polymerase III, beta subunit [Escherichia coli FRIK920]
gi|408065969|gb|EKH00436.1| DNA polymerase III, beta subunit [Escherichia coli PA34]
gi|408075934|gb|EKH10164.1| DNA polymerase III, beta subunit [Escherichia coli FDA506]
gi|408080410|gb|EKH14485.1| DNA polymerase III, beta subunit [Escherichia coli FDA507]
gi|408088547|gb|EKH21908.1| DNA polymerase III, beta subunit [Escherichia coli FDA504]
gi|408094722|gb|EKH27732.1| DNA polymerase III, beta subunit [Escherichia coli FRIK1999]
gi|408100951|gb|EKH33425.1| DNA polymerase III, beta subunit [Escherichia coli FRIK1997]
gi|408105936|gb|EKH38068.1| DNA polymerase III, beta subunit [Escherichia coli NE1487]
gi|408112671|gb|EKH44306.1| DNA polymerase III, beta subunit [Escherichia coli NE037]
gi|408118953|gb|EKH50058.1| DNA polymerase III, beta subunit [Escherichia coli FRIK2001]
gi|408125063|gb|EKH55692.1| DNA polymerase III, beta subunit [Escherichia coli PA4]
gi|408134915|gb|EKH64727.1| DNA polymerase III, beta subunit [Escherichia coli PA23]
gi|408137059|gb|EKH66774.1| DNA polymerase III, beta subunit [Escherichia coli PA49]
gi|408143904|gb|EKH73164.1| DNA polymerase III, beta subunit [Escherichia coli PA45]
gi|408152336|gb|EKH80776.1| DNA polymerase III, beta subunit [Escherichia coli TT12B]
gi|408157344|gb|EKH85498.1| DNA polymerase III, beta subunit [Escherichia coli MA6]
gi|408161439|gb|EKH89395.1| DNA polymerase III, beta subunit [Escherichia coli 5905]
gi|408170555|gb|EKH97735.1| DNA polymerase III, beta subunit [Escherichia coli CB7326]
gi|408177470|gb|EKI04264.1| DNA polymerase III, beta subunit [Escherichia coli EC96038]
gi|408180481|gb|EKI07091.1| DNA polymerase III, beta subunit [Escherichia coli 5412]
gi|408189745|gb|EKI15444.1| DNA polymerase III, beta subunit [Escherichia coli TW15901]
gi|408197579|gb|EKI22838.1| DNA polymerase III, beta subunit [Escherichia coli ARS4.2123]
gi|408197985|gb|EKI23231.1| DNA polymerase III, beta subunit [Escherichia coli TW00353]
gi|408209156|gb|EKI33764.1| DNA polymerase III, beta subunit [Escherichia coli 3006]
gi|408210605|gb|EKI35167.1| DNA polymerase III, beta subunit [Escherichia coli 07798]
gi|408212606|gb|EKI37127.1| DNA polymerase III, beta subunit [Escherichia coli PA38]
gi|408223807|gb|EKI47557.1| DNA polymerase III, beta subunit [Escherichia coli EC1735]
gi|408225236|gb|EKI48923.1| DNA polymerase III, beta subunit [Escherichia coli N1]
gi|408235277|gb|EKI58243.1| DNA polymerase III, beta subunit [Escherichia coli EC1736]
gi|408238362|gb|EKI61169.1| DNA polymerase III, beta subunit [Escherichia coli EC1737]
gi|408243419|gb|EKI65941.1| DNA polymerase III, beta subunit [Escherichia coli EC1846]
gi|408252253|gb|EKI73931.1| DNA polymerase III, beta subunit [Escherichia coli EC1847]
gi|408256336|gb|EKI77719.1| DNA polymerase III, beta subunit [Escherichia coli EC1848]
gi|408262992|gb|EKI83887.1| DNA polymerase III, beta subunit [Escherichia coli EC1849]
gi|408271198|gb|EKI91335.1| DNA polymerase III, beta subunit [Escherichia coli EC1850]
gi|408274362|gb|EKI94376.1| DNA polymerase III, beta subunit [Escherichia coli EC1856]
gi|408282458|gb|EKJ01765.1| DNA polymerase III, beta subunit [Escherichia coli EC1862]
gi|408288697|gb|EKJ07512.1| DNA polymerase III, beta subunit [Escherichia coli EC1864]
gi|408293219|gb|EKJ11673.1| DNA polymerase III, beta subunit [Escherichia coli EC1865]
gi|408303945|gb|EKJ21393.1| DNA polymerase III, beta subunit [Escherichia coli EC1868]
gi|408304720|gb|EKJ22142.1| DNA polymerase III, beta subunit [Escherichia coli EC1866]
gi|408316190|gb|EKJ32483.1| DNA polymerase III, beta subunit [Escherichia coli EC1869]
gi|408321453|gb|EKJ37484.1| DNA polymerase III, beta subunit [Escherichia coli EC1870]
gi|408323311|gb|EKJ39274.1| DNA polymerase III, beta subunit [Escherichia coli NE098]
gi|408334143|gb|EKJ49042.1| DNA polymerase III, beta subunit [Escherichia coli FRIK523]
gi|408340842|gb|EKJ55322.1| DNA polymerase III, beta subunit [Escherichia coli 0.1288]
gi|408342314|gb|EKJ56743.1| DNA polymerase III, beta subunit [Escherichia coli 0.1304]
gi|408457815|gb|EKJ81607.1| DNA polymerase III subunit beta [Escherichia coli AD30]
gi|408545189|gb|EKK22628.1| DNA polymerase III, beta subunit [Escherichia coli 5.2239]
gi|408545819|gb|EKK23243.1| DNA polymerase III, beta subunit [Escherichia coli 3.4870]
gi|408546395|gb|EKK23810.1| DNA polymerase III, beta subunit [Escherichia coli 6.0172]
gi|408563700|gb|EKK39831.1| DNA polymerase III, beta subunit [Escherichia coli 8.0566]
gi|408564063|gb|EKK40183.1| DNA polymerase III, beta subunit [Escherichia coli 8.0586]
gi|408564795|gb|EKK40896.1| DNA polymerase III, beta subunit [Escherichia coli 8.0569]
gi|408575850|gb|EKK51493.1| DNA polymerase III, beta subunit [Escherichia coli 10.0833]
gi|408578824|gb|EKK54330.1| DNA polymerase III, beta subunit [Escherichia coli 8.2524]
gi|408588474|gb|EKK63047.1| DNA polymerase III, beta subunit [Escherichia coli 10.0869]
gi|408593488|gb|EKK67798.1| DNA polymerase III, beta subunit [Escherichia coli 88.0221]
gi|408599112|gb|EKK73036.1| DNA polymerase III, beta subunit [Escherichia coli 8.0416]
gi|408609433|gb|EKK82814.1| DNA polymerase III, beta subunit [Escherichia coli 10.0821]
gi|412965084|emb|CCK49014.1| DNA polymerase III, beta-subunit [Escherichia coli chi7122]
gi|412971668|emb|CCJ46331.1| DNA polymerase III, beta-subunit [Escherichia coli]
gi|421936209|gb|EKT93876.1| DNA polymerase III subunit beta [Escherichia coli O111:H8 str.
CFSAN001632]
gi|421936470|gb|EKT94133.1| DNA polymerase III subunit beta [Escherichia coli O26:H11 str.
CFSAN001629]
gi|421947997|gb|EKU05048.1| DNA polymerase III subunit beta [Escherichia coli O111:H11 str.
CFSAN001630]
gi|427201523|gb|EKV71904.1| DNA polymerase III, beta subunit [Escherichia coli 88.1042]
gi|427201737|gb|EKV72106.1| DNA polymerase III, beta subunit [Escherichia coli 89.0511]
gi|427204918|gb|EKV75180.1| DNA polymerase III, beta subunit [Escherichia coli 88.1467]
gi|427218034|gb|EKV87078.1| DNA polymerase III, beta subunit [Escherichia coli 90.0091]
gi|427221465|gb|EKV90311.1| DNA polymerase III, beta subunit [Escherichia coli 90.2281]
gi|427224449|gb|EKV93157.1| DNA polymerase III, beta subunit [Escherichia coli 90.0039]
gi|427238468|gb|EKW05985.1| DNA polymerase III, beta subunit [Escherichia coli 93.0056]
gi|427238649|gb|EKW06164.1| DNA polymerase III, beta subunit [Escherichia coli 93.0055]
gi|427242960|gb|EKW10355.1| DNA polymerase III, beta subunit [Escherichia coli 94.0618]
gi|427256013|gb|EKW22239.1| DNA polymerase III, beta subunit [Escherichia coli 95.0183]
gi|427257645|gb|EKW23763.1| DNA polymerase III, beta subunit [Escherichia coli 95.0943]
gi|427259128|gb|EKW25201.1| DNA polymerase III, beta subunit [Escherichia coli 95.1288]
gi|427273260|gb|EKW37949.1| DNA polymerase III, beta subunit [Escherichia coli 96.0428]
gi|427275657|gb|EKW40268.1| DNA polymerase III, beta subunit [Escherichia coli 96.0427]
gi|427280690|gb|EKW45042.1| DNA polymerase III, beta subunit [Escherichia coli 96.0939]
gi|427289265|gb|EKW52841.1| DNA polymerase III, beta subunit [Escherichia coli 96.0932]
gi|427295957|gb|EKW59029.1| DNA polymerase III, beta subunit [Escherichia coli 96.0107]
gi|427298107|gb|EKW61129.1| DNA polymerase III, beta subunit [Escherichia coli 97.0003]
gi|427308322|gb|EKW70723.1| DNA polymerase III, beta subunit [Escherichia coli 97.1742]
gi|427311448|gb|EKW73652.1| DNA polymerase III, beta subunit [Escherichia coli 97.0007]
gi|427315926|gb|EKW77901.1| DNA polymerase III, beta subunit [Escherichia coli 99.0672]
gi|427325273|gb|EKW86719.1| DNA polymerase III, beta subunit [Escherichia coli 99.0678]
gi|427326583|gb|EKW87992.1| DNA polymerase III, beta subunit [Escherichia coli 99.0713]
gi|429251013|gb|EKY35646.1| DNA polymerase III, beta subunit [Escherichia coli 96.0109]
gi|429251648|gb|EKY36231.1| DNA polymerase III, beta subunit [Escherichia coli 97.0010]
gi|429355871|gb|EKY92555.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-02030]
gi|429356225|gb|EKY92905.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-02033-1]
gi|429357917|gb|EKY94588.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-02092]
gi|429371285|gb|EKZ07843.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-02093]
gi|429373288|gb|EKZ09835.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-02281]
gi|429376040|gb|EKZ12571.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-02318]
gi|429387615|gb|EKZ24054.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-02913]
gi|429390378|gb|EKZ26792.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-03439]
gi|429390829|gb|EKZ27237.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-03943]
gi|429401235|gb|EKZ37543.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
11-04080]
gi|429402466|gb|EKZ38757.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429404798|gb|EKZ41068.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429413694|gb|EKZ49879.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429415733|gb|EKZ51892.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429424059|gb|EKZ60165.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429427590|gb|EKZ63671.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429432544|gb|EKZ68583.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429439841|gb|EKZ75822.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429444008|gb|EKZ79955.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429448496|gb|EKZ84409.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429454245|gb|EKZ90108.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429458624|gb|EKZ94447.1| DNA polymerase III subunit beta [Escherichia coli O104:H4 str.
Ec11-9941]
gi|430872164|gb|ELB95779.1| DNA polymerase III subunit beta [Escherichia coli KTE2]
gi|430873302|gb|ELB96877.1| DNA polymerase III subunit beta [Escherichia coli KTE4]
gi|430883258|gb|ELC06262.1| DNA polymerase III subunit beta [Escherichia coli KTE5]
gi|430891002|gb|ELC13550.1| DNA polymerase III subunit beta [Escherichia coli KTE10]
gi|430895888|gb|ELC18141.1| DNA polymerase III subunit beta [Escherichia coli KTE12]
gi|430903510|gb|ELC25247.1| DNA polymerase III subunit beta [Escherichia coli KTE16]
gi|430903996|gb|ELC25732.1| DNA polymerase III subunit beta [Escherichia coli KTE15]
gi|430912823|gb|ELC33995.1| DNA polymerase III subunit beta [Escherichia coli KTE25]
gi|430914097|gb|ELC35205.1| DNA polymerase III subunit beta [Escherichia coli KTE21]
gi|430922620|gb|ELC43368.1| DNA polymerase III subunit beta [Escherichia coli KTE26]
gi|430926158|gb|ELC46746.1| DNA polymerase III subunit beta [Escherichia coli KTE28]
gi|430933005|gb|ELC53423.1| DNA polymerase III subunit beta [Escherichia coli KTE39]
gi|430936293|gb|ELC56576.1| DNA polymerase III subunit beta [Escherichia coli KTE44]
gi|430941746|gb|ELC61888.1| DNA polymerase III subunit beta [Escherichia coli KTE178]
gi|430950209|gb|ELC69597.1| DNA polymerase III subunit beta [Escherichia coli KTE187]
gi|430950612|gb|ELC69841.1| DNA polymerase III subunit beta [Escherichia coli KTE181]
gi|430959758|gb|ELC78064.1| DNA polymerase III subunit beta [Escherichia coli KTE188]
gi|430962874|gb|ELC80720.1| DNA polymerase III subunit beta [Escherichia coli KTE189]
gi|430970776|gb|ELC87821.1| DNA polymerase III subunit beta [Escherichia coli KTE191]
gi|430977124|gb|ELC93975.1| DNA polymerase III subunit beta [Escherichia coli KTE193]
gi|430979382|gb|ELC96167.1| DNA polymerase III subunit beta [Escherichia coli KTE201]
gi|430985467|gb|ELD02067.1| DNA polymerase III subunit beta [Escherichia coli KTE204]
gi|430990974|gb|ELD07394.1| DNA polymerase III subunit beta [Escherichia coli KTE205]
gi|430995514|gb|ELD11807.1| DNA polymerase III subunit beta [Escherichia coli KTE206]
gi|431001934|gb|ELD17504.1| DNA polymerase III subunit beta [Escherichia coli KTE208]
gi|431003429|gb|ELD18912.1| DNA polymerase III subunit beta [Escherichia coli KTE210]
gi|431013301|gb|ELD27034.1| DNA polymerase III subunit beta [Escherichia coli KTE212]
gi|431017252|gb|ELD30764.1| DNA polymerase III subunit beta [Escherichia coli KTE213]
gi|431020859|gb|ELD34194.1| DNA polymerase III subunit beta [Escherichia coli KTE214]
gi|431025937|gb|ELD39023.1| DNA polymerase III subunit beta [Escherichia coli KTE216]
gi|431035427|gb|ELD46817.1| DNA polymerase III subunit beta [Escherichia coli KTE220]
gi|431038798|gb|ELD49694.1| DNA polymerase III subunit beta [Escherichia coli KTE224]
gi|431047533|gb|ELD57531.1| DNA polymerase III subunit beta [Escherichia coli KTE230]
gi|431048183|gb|ELD58168.1| DNA polymerase III subunit beta [Escherichia coli KTE228]
gi|431057487|gb|ELD66930.1| DNA polymerase III subunit beta [Escherichia coli KTE234]
gi|431059998|gb|ELD69340.1| DNA polymerase III subunit beta [Escherichia coli KTE233]
gi|431066589|gb|ELD75213.1| DNA polymerase III subunit beta [Escherichia coli KTE235]
gi|431070689|gb|ELD78988.1| DNA polymerase III subunit beta [Escherichia coli KTE236]
gi|431076143|gb|ELD83653.1| DNA polymerase III subunit beta [Escherichia coli KTE237]
gi|431080918|gb|ELD87704.1| DNA polymerase III subunit beta [Escherichia coli KTE47]
gi|431088475|gb|ELD94353.1| DNA polymerase III subunit beta [Escherichia coli KTE49]
gi|431089661|gb|ELD95467.1| DNA polymerase III subunit beta [Escherichia coli KTE51]
gi|431097155|gb|ELE02604.1| DNA polymerase III subunit beta [Escherichia coli KTE53]
gi|431104729|gb|ELE09102.1| DNA polymerase III subunit beta [Escherichia coli KTE55]
gi|431111948|gb|ELE15838.1| DNA polymerase III subunit beta [Escherichia coli KTE56]
gi|431115142|gb|ELE18669.1| DNA polymerase III subunit beta [Escherichia coli KTE57]
gi|431117679|gb|ELE20907.1| DNA polymerase III subunit beta [Escherichia coli KTE58]
gi|431125829|gb|ELE28226.1| DNA polymerase III subunit beta [Escherichia coli KTE60]
gi|431127846|gb|ELE30140.1| DNA polymerase III subunit beta [Escherichia coli KTE62]
gi|431137015|gb|ELE38869.1| DNA polymerase III subunit beta [Escherichia coli KTE66]
gi|431144175|gb|ELE45882.1| DNA polymerase III subunit beta [Escherichia coli KTE67]
gi|431146739|gb|ELE48175.1| DNA polymerase III subunit beta [Escherichia coli KTE72]
gi|431150540|gb|ELE51590.1| DNA polymerase III subunit beta [Escherichia coli KTE75]
gi|431155619|gb|ELE56365.1| DNA polymerase III subunit beta [Escherichia coli KTE76]
gi|431160272|gb|ELE60787.1| DNA polymerase III subunit beta [Escherichia coli KTE77]
gi|431167047|gb|ELE67347.1| DNA polymerase III subunit beta [Escherichia coli KTE80]
gi|431168408|gb|ELE68654.1| DNA polymerase III subunit beta [Escherichia coli KTE81]
gi|431177164|gb|ELE77100.1| DNA polymerase III subunit beta [Escherichia coli KTE83]
gi|431178358|gb|ELE78271.1| DNA polymerase III subunit beta [Escherichia coli KTE86]
gi|431186487|gb|ELE86027.1| DNA polymerase III subunit beta [Escherichia coli KTE87]
gi|431188061|gb|ELE87560.1| DNA polymerase III subunit beta [Escherichia coli KTE93]
gi|431196659|gb|ELE95572.1| DNA polymerase III subunit beta [Escherichia coli KTE111]
gi|431197353|gb|ELE96205.1| DNA polymerase III subunit beta [Escherichia coli KTE116]
gi|431207506|gb|ELF05762.1| DNA polymerase III subunit beta [Escherichia coli KTE119]
gi|431210172|gb|ELF08235.1| DNA polymerase III subunit beta [Escherichia coli KTE142]
gi|431217343|gb|ELF14922.1| DNA polymerase III subunit beta [Escherichia coli KTE143]
gi|431219195|gb|ELF16613.1| DNA polymerase III subunit beta [Escherichia coli KTE156]
gi|431231223|gb|ELF26991.1| DNA polymerase III subunit beta [Escherichia coli KTE162]
gi|431234510|gb|ELF29909.1| DNA polymerase III subunit beta [Escherichia coli KTE161]
gi|431240340|gb|ELF34802.1| DNA polymerase III subunit beta [Escherichia coli KTE169]
gi|431240635|gb|ELF35086.1| DNA polymerase III subunit beta [Escherichia coli KTE171]
gi|431251830|gb|ELF45836.1| DNA polymerase III subunit beta [Escherichia coli KTE8]
gi|431254553|gb|ELF47821.1| DNA polymerase III subunit beta [Escherichia coli KTE6]
gi|431258487|gb|ELF51251.1| DNA polymerase III subunit beta [Escherichia coli KTE9]
gi|431262398|gb|ELF54388.1| DNA polymerase III subunit beta [Escherichia coli KTE17]
gi|431270928|gb|ELF62071.1| DNA polymerase III subunit beta [Escherichia coli KTE18]
gi|431271082|gb|ELF62224.1| DNA polymerase III subunit beta [Escherichia coli KTE45]
gi|431279309|gb|ELF70277.1| DNA polymerase III subunit beta [Escherichia coli KTE42]
gi|431281633|gb|ELF72536.1| DNA polymerase III subunit beta [Escherichia coli KTE23]
gi|431289589|gb|ELF80330.1| DNA polymerase III subunit beta [Escherichia coli KTE43]
gi|431299559|gb|ELF89130.1| DNA polymerase III subunit beta [Escherichia coli KTE22]
gi|431305490|gb|ELF93813.1| DNA polymerase III subunit beta [Escherichia coli KTE46]
gi|431307137|gb|ELF95438.1| DNA polymerase III subunit beta [Escherichia coli KTE48]
gi|431321353|gb|ELG08954.1| DNA polymerase III subunit beta [Escherichia coli KTE50]
gi|431323377|gb|ELG10875.1| DNA polymerase III subunit beta [Escherichia coli KTE54]
gi|431324589|gb|ELG12041.1| DNA polymerase III subunit beta [Escherichia coli KTE59]
gi|431326023|gb|ELG13386.1| DNA polymerase III subunit beta [Escherichia coli KTE63]
gi|431334909|gb|ELG22053.1| DNA polymerase III subunit beta [Escherichia coli KTE65]
gi|431335567|gb|ELG22698.1| DNA polymerase III subunit beta [Escherichia coli KTE78]
gi|431345429|gb|ELG32350.1| DNA polymerase III subunit beta [Escherichia coli KTE84]
gi|431348026|gb|ELG34899.1| DNA polymerase III subunit beta [Escherichia coli KTE79]
gi|431359909|gb|ELG46534.1| DNA polymerase III subunit beta [Escherichia coli KTE101]
gi|431360111|gb|ELG46724.1| DNA polymerase III subunit beta [Escherichia coli KTE115]
gi|431365385|gb|ELG51899.1| DNA polymerase III subunit beta [Escherichia coli KTE118]
gi|431377578|gb|ELG62704.1| DNA polymerase III subunit beta [Escherichia coli KTE123]
gi|431381722|gb|ELG66074.1| DNA polymerase III subunit beta [Escherichia coli KTE136]
gi|431382269|gb|ELG66609.1| DNA polymerase III subunit beta [Escherichia coli KTE135]
gi|431385800|gb|ELG69786.1| DNA polymerase III subunit beta [Escherichia coli KTE140]
gi|431392377|gb|ELG75976.1| DNA polymerase III subunit beta [Escherichia coli KTE141]
gi|431397009|gb|ELG80470.1| DNA polymerase III subunit beta [Escherichia coli KTE144]
gi|431401015|gb|ELG84369.1| DNA polymerase III subunit beta [Escherichia coli KTE146]
gi|431407806|gb|ELG91011.1| DNA polymerase III subunit beta [Escherichia coli KTE147]
gi|431413332|gb|ELG96122.1| DNA polymerase III subunit beta [Escherichia coli KTE158]
gi|431417322|gb|ELG99785.1| DNA polymerase III subunit beta [Escherichia coli KTE154]
gi|431422314|gb|ELH04507.1| DNA polymerase III subunit beta [Escherichia coli KTE192]
gi|431427317|gb|ELH09358.1| DNA polymerase III subunit beta [Escherichia coli KTE194]
gi|431434888|gb|ELH16502.1| DNA polymerase III subunit beta [Escherichia coli KTE173]
gi|431434987|gb|ELH16600.1| DNA polymerase III subunit beta [Escherichia coli KTE190]
gi|431440985|gb|ELH22313.1| DNA polymerase III subunit beta [Escherichia coli KTE175]
gi|431452501|gb|ELH32945.1| DNA polymerase III subunit beta [Escherichia coli KTE196]
gi|431460415|gb|ELH40704.1| DNA polymerase III subunit beta [Escherichia coli KTE183]
gi|431463546|gb|ELH43736.1| DNA polymerase III subunit beta [Escherichia coli KTE197]
gi|431467524|gb|ELH47532.1| DNA polymerase III subunit beta [Escherichia coli KTE202]
gi|431476959|gb|ELH56746.1| DNA polymerase III subunit beta [Escherichia coli KTE203]
gi|431479334|gb|ELH59077.1| DNA polymerase III subunit beta [Escherichia coli KTE207]
gi|431485605|gb|ELH65264.1| DNA polymerase III subunit beta [Escherichia coli KTE209]
gi|431488079|gb|ELH67716.1| DNA polymerase III subunit beta [Escherichia coli KTE211]
gi|431490615|gb|ELH70225.1| DNA polymerase III subunit beta [Escherichia coli KTE217]
gi|431494318|gb|ELH73907.1| DNA polymerase III subunit beta [Escherichia coli KTE215]
gi|431502190|gb|ELH81082.1| DNA polymerase III subunit beta [Escherichia coli KTE218]
gi|431504366|gb|ELH82992.1| DNA polymerase III subunit beta [Escherichia coli KTE223]
gi|431521298|gb|ELH98546.1| DNA polymerase III subunit beta [Escherichia coli KTE229]
gi|431521910|gb|ELH99146.1| DNA polymerase III subunit beta [Escherichia coli KTE227]
gi|431526336|gb|ELI03092.1| DNA polymerase III subunit beta [Escherichia coli KTE104]
gi|431526670|gb|ELI03413.1| DNA polymerase III subunit beta [Escherichia coli KTE105]
gi|431530716|gb|ELI07394.1| DNA polymerase III subunit beta [Escherichia coli KTE106]
gi|431540289|gb|ELI15916.1| DNA polymerase III subunit beta [Escherichia coli KTE109]
gi|431546111|gb|ELI20753.1| DNA polymerase III subunit beta [Escherichia coli KTE112]
gi|431548057|gb|ELI22345.1| DNA polymerase III subunit beta [Escherichia coli KTE113]
gi|431552449|gb|ELI26409.1| DNA polymerase III subunit beta [Escherichia coli KTE117]
gi|431562022|gb|ELI35358.1| DNA polymerase III subunit beta [Escherichia coli KTE120]
gi|431565517|gb|ELI38598.1| DNA polymerase III subunit beta [Escherichia coli KTE122]
gi|431565844|gb|ELI38919.1| DNA polymerase III subunit beta [Escherichia coli KTE124]
gi|431577901|gb|ELI50519.1| DNA polymerase III subunit beta [Escherichia coli KTE125]
gi|431578436|gb|ELI51039.1| DNA polymerase III subunit beta [Escherichia coli KTE128]
gi|431583492|gb|ELI55497.1| DNA polymerase III subunit beta [Escherichia coli KTE129]
gi|431593961|gb|ELI64252.1| DNA polymerase III subunit beta [Escherichia coli KTE131]
gi|431598045|gb|ELI67946.1| DNA polymerase III subunit beta [Escherichia coli KTE133]
gi|431600730|gb|ELI70397.1| DNA polymerase III subunit beta [Escherichia coli KTE137]
gi|431606828|gb|ELI76200.1| DNA polymerase III subunit beta [Escherichia coli KTE138]
gi|431612149|gb|ELI81400.1| DNA polymerase III subunit beta [Escherichia coli KTE139]
gi|431616075|gb|ELI85143.1| DNA polymerase III subunit beta [Escherichia coli KTE145]
gi|431623870|gb|ELI92496.1| DNA polymerase III subunit beta [Escherichia coli KTE148]
gi|431624749|gb|ELI93346.1| DNA polymerase III subunit beta [Escherichia coli KTE150]
gi|431630606|gb|ELI98935.1| DNA polymerase III subunit beta [Escherichia coli KTE153]
gi|431638849|gb|ELJ06727.1| DNA polymerase III subunit beta [Escherichia coli KTE157]
gi|431640224|gb|ELJ07985.1| DNA polymerase III subunit beta [Escherichia coli KTE160]
gi|431642644|gb|ELJ10366.1| DNA polymerase III subunit beta [Escherichia coli KTE163]
gi|431653160|gb|ELJ20272.1| DNA polymerase III subunit beta [Escherichia coli KTE166]
gi|431655845|gb|ELJ22875.1| DNA polymerase III subunit beta [Escherichia coli KTE167]
gi|431657536|gb|ELJ24500.1| DNA polymerase III subunit beta [Escherichia coli KTE168]
gi|431667165|gb|ELJ33757.1| DNA polymerase III subunit beta [Escherichia coli KTE174]
gi|431670054|gb|ELJ36413.1| DNA polymerase III subunit beta [Escherichia coli KTE176]
gi|431673267|gb|ELJ39494.1| DNA polymerase III subunit beta [Escherichia coli KTE177]
gi|431683628|gb|ELJ49257.1| DNA polymerase III subunit beta [Escherichia coli KTE179]
gi|431684052|gb|ELJ49673.1| DNA polymerase III subunit beta [Escherichia coli KTE180]
gi|431687744|gb|ELJ53286.1| DNA polymerase III subunit beta [Escherichia coli KTE232]
gi|431697688|gb|ELJ62786.1| DNA polymerase III subunit beta [Escherichia coli KTE82]
gi|431702160|gb|ELJ66961.1| DNA polymerase III subunit beta [Escherichia coli KTE88]
gi|431702409|gb|ELJ67209.1| DNA polymerase III subunit beta [Escherichia coli KTE85]
gi|431715922|gb|ELJ80065.1| DNA polymerase III subunit beta [Escherichia coli KTE95]
gi|431717012|gb|ELJ81115.1| DNA polymerase III subunit beta [Escherichia coli KTE94]
gi|431728144|gb|ELJ91865.1| DNA polymerase III subunit beta [Escherichia coli KTE97]
gi|431731418|gb|ELJ94919.1| DNA polymerase III subunit beta [Escherichia coli KTE99]
gi|432349480|gb|ELL43907.1| DNA polymerase III subunit beta [Escherichia coli J96]
gi|441604400|emb|CCP98531.1| DNA polymerase III beta subunit [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|441655446|emb|CCP99927.1| DNA polymerase III beta subunit [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|441713434|emb|CCQ06545.1| DNA polymerase III beta subunit [Escherichia coli Nissle 1917]
gi|443424287|gb|AGC89191.1| DNA polymerase III subunit beta [Escherichia coli APEC O78]
gi|444535102|gb|ELV15235.1| DNA polymerase III, beta subunit [Escherichia coli 99.0814]
gi|444536672|gb|ELV16675.1| DNA polymerase III, beta subunit [Escherichia coli 09BKT078844]
gi|444545404|gb|ELV24304.1| DNA polymerase III, beta subunit [Escherichia coli 99.0815]
gi|444554726|gb|ELV32266.1| DNA polymerase III, beta subunit [Escherichia coli 99.0816]
gi|444554819|gb|ELV32341.1| DNA polymerase III, beta subunit [Escherichia coli 99.0839]
gi|444559644|gb|ELV36856.1| DNA polymerase III, beta subunit [Escherichia coli 99.0848]
gi|444569134|gb|ELV45760.1| DNA polymerase III, beta subunit [Escherichia coli 99.1753]
gi|444572751|gb|ELV49164.1| DNA polymerase III, beta subunit [Escherichia coli 99.1775]
gi|444576293|gb|ELV52486.1| DNA polymerase III, beta subunit [Escherichia coli 99.1793]
gi|444588430|gb|ELV63808.1| DNA polymerase III, beta subunit [Escherichia coli 99.1805]
gi|444589345|gb|ELV64681.1| DNA polymerase III, beta subunit [Escherichia coli ATCC 700728]
gi|444589717|gb|ELV65045.1| DNA polymerase III, beta subunit [Escherichia coli PA11]
gi|444603603|gb|ELV78304.1| DNA polymerase III, beta subunit [Escherichia coli PA13]
gi|444603788|gb|ELV78483.1| DNA polymerase III, beta subunit [Escherichia coli PA19]
gi|444612660|gb|ELV86945.1| DNA polymerase III, beta subunit [Escherichia coli PA2]
gi|444619723|gb|ELV93753.1| DNA polymerase III, beta subunit [Escherichia coli PA47]
gi|444620708|gb|ELV94705.1| DNA polymerase III, beta subunit [Escherichia coli PA48]
gi|444627175|gb|ELW00953.1| DNA polymerase III, beta subunit [Escherichia coli PA8]
gi|444635481|gb|ELW08908.1| DNA polymerase III, beta subunit [Escherichia coli 7.1982]
gi|444637653|gb|ELW11019.1| DNA polymerase III, beta subunit [Escherichia coli 99.1781]
gi|444642319|gb|ELW15515.1| DNA polymerase III, beta subunit [Escherichia coli 99.1762]
gi|444651905|gb|ELW24690.1| DNA polymerase III, beta subunit [Escherichia coli PA35]
gi|444657166|gb|ELW29659.1| DNA polymerase III, beta subunit [Escherichia coli 3.4880]
gi|444659956|gb|ELW32341.1| DNA polymerase III, beta subunit [Escherichia coli 95.0083]
gi|444667041|gb|ELW39090.1| DNA polymerase III, beta subunit [Escherichia coli 99.0670]
gi|449313772|gb|EMD03963.1| DNA polymerase III subunit beta [Escherichia coli O08]
gi|449314672|gb|EMD04835.1| DNA polymerase III subunit beta [Escherichia coli S17]
gi|449316403|gb|EMD06519.1| DNA polymerase III subunit beta [Escherichia coli SEPT362]
Length = 366
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ +NP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|91791371|ref|YP_561022.1| DNA polymerase III, beta subunit [Shewanella denitrificans OS217]
gi|91713373|gb|ABE53299.1| DNA polymerase III, beta subunit [Shewanella denitrificans OS217]
Length = 366
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 183/299 (61%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
+++A+L PLQ+V VE+++ LPIL+N+LV + + IS TD EV++ A+
Sbjct: 6 DRDALLKPLQLVTGAVERRHNLPILANLLVKVSQDVISLTGTDLEVELVGQAAIHGDIVP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
N V A+K +DI++SLPE ++ + ++ ++SG+S+FTL TL A +YP + +
Sbjct: 66 GNTTVPAKKLLDIVKSLPEQSELHVEQQDNRWLLRSGRSRFTLATLPASDYPNVEA-FQA 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFT+ Q LK I++ FS+A QD+RYYLNGLL + + A+++DGHRL I
Sbjct: 125 EIEFTIKQGVLKSIIDSTQFSMANQDVRYYLNGLLFETEGNTLKAIATDGHRLALSHRQI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK V + RLL++ + + + I + I+ + SKL+DG+F D
Sbjct: 185 DVSLPE-KQVIVPRKGVVEMSRLLDSDDKDISIAIGESAIRAVTDTAVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + +R +L ++L R SI+SN+K +GVR+ ++P L+IT ++ +E+A
Sbjct: 244 YRRVLPKGGDKVVVASRQQLKQALTRASILSNEKFRGVRIQLEPGLLRITANNPEQEEA 302
>gi|215489041|ref|YP_002331472.1| DNA polymerase III subunit beta [Escherichia coli O127:H6 str.
E2348/69]
gi|312967889|ref|ZP_07782101.1| DNA polymerase III, beta subunit [Escherichia coli 2362-75]
gi|417758135|ref|ZP_12406196.1| DNA polymerase III, beta subunit [Escherichia coli DEC2B]
gi|418999228|ref|ZP_13546805.1| DNA polymerase III, beta subunit [Escherichia coli DEC1A]
gi|419004516|ref|ZP_13552024.1| DNA polymerase III, beta subunit [Escherichia coli DEC1B]
gi|419010199|ref|ZP_13557607.1| DNA polymerase III, beta subunit [Escherichia coli DEC1C]
gi|419015900|ref|ZP_13563234.1| DNA polymerase III, beta subunit [Escherichia coli DEC1D]
gi|419020825|ref|ZP_13568122.1| DNA polymerase III, beta subunit [Escherichia coli DEC1E]
gi|419026277|ref|ZP_13573490.1| DNA polymerase III, beta subunit [Escherichia coli DEC2A]
gi|419031423|ref|ZP_13578563.1| DNA polymerase III, beta subunit [Escherichia coli DEC2C]
gi|419037015|ref|ZP_13584086.1| DNA polymerase III, beta subunit [Escherichia coli DEC2D]
gi|419042126|ref|ZP_13589141.1| DNA polymerase III, beta subunit [Escherichia coli DEC2E]
gi|215267113|emb|CAS11560.1| DNA polymerase III, beta subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|312287450|gb|EFR15358.1| DNA polymerase III, beta subunit [Escherichia coli 2362-75]
gi|377839137|gb|EHU04236.1| DNA polymerase III, beta subunit [Escherichia coli DEC1C]
gi|377839276|gb|EHU04374.1| DNA polymerase III, beta subunit [Escherichia coli DEC1A]
gi|377841924|gb|EHU06980.1| DNA polymerase III, beta subunit [Escherichia coli DEC1B]
gi|377853019|gb|EHU17926.1| DNA polymerase III, beta subunit [Escherichia coli DEC1D]
gi|377856786|gb|EHU21645.1| DNA polymerase III, beta subunit [Escherichia coli DEC1E]
gi|377858343|gb|EHU23183.1| DNA polymerase III, beta subunit [Escherichia coli DEC2A]
gi|377870443|gb|EHU35127.1| DNA polymerase III, beta subunit [Escherichia coli DEC2B]
gi|377872274|gb|EHU36921.1| DNA polymerase III, beta subunit [Escherichia coli DEC2C]
gi|377874686|gb|EHU39312.1| DNA polymerase III, beta subunit [Escherichia coli DEC2D]
gi|377886138|gb|EHU50623.1| DNA polymerase III, beta subunit [Escherichia coli DEC2E]
Length = 366
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ +NP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRMLDGGDNPMRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|317494668|ref|ZP_07953080.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
gi|365836877|ref|ZP_09378261.1| DNA polymerase III, beta subunit [Hafnia alvei ATCC 51873]
gi|316917270|gb|EFV38617.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
gi|364563074|gb|EHM40894.1| DNA polymerase III, beta subunit [Hafnia alvei ATCC 51873]
Length = 366
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ + + +
Sbjct: 6 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQVEDGHLLLTGTDLEMEMIARVPLAQEHET 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LP+ ++T+ ++ M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPDGAEITVVLDGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATLKKLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ E P+ L+I +N I+ SKL+DG+F D
Sbjct: 185 GQSVPSHS-VIVPRKGVMELSRLLDGGETPLRLQIGSNNIRAHVGGFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ ++L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLKAGCDELKQAFARAAILSNEKFRGVRLYVSHNQLKITANNPEQEEA 302
>gi|440228798|ref|YP_007342591.1| DNA polymerase III, beta subunit [Serratia marcescens FGI94]
gi|440050503|gb|AGB80406.1| DNA polymerase III, beta subunit [Serratia marcescens FGI94]
Length = 366
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 178/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ A+ + +
Sbjct: 6 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALSQPHEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVTLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGAELRTVATDGHRLAVCAMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+++ S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F D
Sbjct: 185 EQQLPLHS-VIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSHNQLKITANNPEQEEA 302
>gi|390990401|ref|ZP_10260687.1| DNA polymerase III, beta subunit [Xanthomonas axonopodis pv.
punicae str. LMG 859]
gi|372554847|emb|CCF67662.1| DNA polymerase III, beta subunit [Xanthomonas axonopodis pv.
punicae str. LMG 859]
Length = 366
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 111/295 (37%), Positives = 177/295 (60%), Gaps = 10/295 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A L PL V+++VE++ LP+L+N+LV ++S TD EV++ + T V
Sbjct: 6 QREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTLVEDAQDG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ ARK DILR+LP+ +VTI + +++G+S+FTL TL +K++P S
Sbjct: 66 -ETTIPARKLFDILRALPDGSRVTISQTGDKVTVQAGRSRFTLATLPSKDFP-----SVD 119
Query: 128 DFEFT----LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
+ E T + + LK ++ F++AQQD+RYYLNGLL + + V++DGHRL
Sbjct: 120 EVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLRCVATDGHRLALC 179
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDG 243
++ ++K + II+PRK V LQRLLE + VEL++ + I++ ++ SKLIDG
Sbjct: 180 EMELEKAGGAKRQIIVPRKGVTELQRLLEGADREVELEVGRSHIRVKRGDVTFTSKLIDG 239
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
+F DY+ VI ++ V+R L SLQR +I+SN+K +GVR+ + P LKI+
Sbjct: 240 RFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISA 294
>gi|193069140|ref|ZP_03050097.1| DNA polymerase III, beta subunit [Escherichia coli E110019]
gi|192957464|gb|EDV87910.1| DNA polymerase III, beta subunit [Escherichia coli E110019]
Length = 366
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ +NP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 SQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|238917985|ref|YP_002931499.1| DNA polymerase III, beta subunit, putative [Edwardsiella ictaluri
93-146]
gi|269137360|ref|YP_003294060.1| DNA polymerase III subunit beta [Edwardsiella tarda EIB202]
gi|387866148|ref|YP_005697617.1| DNA polymerase III subunit beta [Edwardsiella tarda FL6-60]
gi|238867553|gb|ACR67264.1| DNA polymerase III, beta subunit, putative [Edwardsiella ictaluri
93-146]
gi|267983020|gb|ACY82849.1| DNA polymerase III, beta subunit [Edwardsiella tarda EIB202]
gi|304557461|gb|ADM40125.1| DNA polymerase III beta subunit [Edwardsiella tarda FL6-60]
Length = 366
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 178/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ ++ PLQ V S + + LPIL N+L+ +S TD E+++ + + +
Sbjct: 6 EREHLIKPLQQVSSPLGGRPTLPILGNLLLQVEDGHLSLTGTDLEMEMVARVPLVQPHEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF+DI R LP+ ++++ ++ M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFLDICRGLPDGAEISVALDGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ E P+ L+I +N ++ SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRLLDGGETPLRLQIGSNNLRAHVGGFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ ++L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKALEAGCDELKQAFARAAILSNEKFRGVRLHVSHNQLKITANNPEQEEA 302
>gi|170766918|ref|ZP_02901371.1| DNA polymerase III, beta subunit [Escherichia albertii TW07627]
gi|366159298|ref|ZP_09459160.1| DNA polymerase III subunit beta [Escherichia sp. TW09308]
gi|432374334|ref|ZP_19617365.1| DNA polymerase III subunit beta [Escherichia coli KTE11]
gi|170124356|gb|EDS93287.1| DNA polymerase III, beta subunit [Escherichia albertii TW07627]
gi|430893756|gb|ELC16080.1| DNA polymerase III subunit beta [Escherichia coli KTE11]
Length = 366
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALIQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ +NP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|293464025|ref|ZP_06664439.1| DNA polymerase III [Escherichia coli B088]
gi|300815052|ref|ZP_07095277.1| DNA polymerase III, beta subunit [Escherichia coli MS 107-1]
gi|415873381|ref|ZP_11540636.1| DNA polymerase III, beta subunit [Escherichia coli MS 79-10]
gi|417669291|ref|ZP_12318828.1| DNA polymerase III, beta subunit [Escherichia coli STEC_O31]
gi|422778288|ref|ZP_16831938.1| DNA polymerase III [Escherichia coli H120]
gi|432752164|ref|ZP_19986740.1| DNA polymerase III subunit beta [Escherichia coli KTE29]
gi|432807954|ref|ZP_20041867.1| DNA polymerase III subunit beta [Escherichia coli KTE91]
gi|432931429|ref|ZP_20131486.1| DNA polymerase III subunit beta [Escherichia coli KTE184]
gi|433195763|ref|ZP_20379731.1| DNA polymerase III subunit beta [Escherichia coli KTE90]
gi|291321657|gb|EFE61093.1| DNA polymerase III [Escherichia coli B088]
gi|300531944|gb|EFK53006.1| DNA polymerase III, beta subunit [Escherichia coli MS 107-1]
gi|323944173|gb|EGB40253.1| DNA polymerase III [Escherichia coli H120]
gi|342930992|gb|EGU99714.1| DNA polymerase III, beta subunit [Escherichia coli MS 79-10]
gi|397783121|gb|EJK93982.1| DNA polymerase III, beta subunit [Escherichia coli STEC_O31]
gi|431293094|gb|ELF83474.1| DNA polymerase III subunit beta [Escherichia coli KTE29]
gi|431352811|gb|ELG39576.1| DNA polymerase III subunit beta [Escherichia coli KTE91]
gi|431459577|gb|ELH39870.1| DNA polymerase III subunit beta [Escherichia coli KTE184]
gi|431713035|gb|ELJ77294.1| DNA polymerase III subunit beta [Escherichia coli KTE90]
Length = 366
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQQHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ +NP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|238797844|ref|ZP_04641336.1| DNA polymerase III subunit beta [Yersinia mollaretii ATCC 43969]
gi|238718260|gb|EEQ10084.1| DNA polymerase III subunit beta [Yersinia mollaretii ATCC 43969]
Length = 366
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 177/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLRLTGTDLEMEMVACVALSQPHEQ 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++T+ ++ + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDIWRGLPEGAEITVALDGDRLLVRSGRSRFSLSTLPAVDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
D EFTL Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 DVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ + P+ L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQTLPSHS-VIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITANNPEQEEA 302
>gi|333376213|ref|ZP_08468003.1| DNA-directed DNA polymerase III beta subunit [Kingella kingae ATCC
23330]
gi|332968622|gb|EGK07676.1| DNA-directed DNA polymerase III beta subunit [Kingella kingae ATCC
23330]
Length = 367
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 115/300 (38%), Positives = 191/300 (63%), Gaps = 4/300 (1%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ T+++ +L P+Q V IVE+K+ LPIL+N+L+ ++ KI L+TD E+QI T A
Sbjct: 2 LILETQRDNLLKPIQAVTGIVERKHTLPILANVLLESHAGKIRVLATDLEIQIHTQGAES 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ + A+K DIL++LP++ V + + + +KSGKS+F LQTL A+++P M
Sbjct: 62 E-HGDFRLTTNAKKLQDILKALPDSANVQLDWADHRLTLKSGKSRFNLQTLPAEDFPTMN 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ F L Q+TLK +++ V +S+A QDIR+YLNGLLL + + V++DGHRL +
Sbjct: 121 VGDTTTAAFALPQETLKHMISQVQYSMAVQDIRFYLNGLLLQVEGNQLRLVATDGHRLAF 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLL-ENKENPVELKISNNQIKIIFSNIEIISKLI 241
ID D+I+PRKTV +LL + KEN V +++ + Q+++ ++ ++SK+I
Sbjct: 181 ASTTIDTDLPK-QDVILPRKTVLEWNKLLNQPKENAV-IELLDKQVRLRCNDTVVVSKVI 238
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DGKF DY VI + ++NR LL +L+R SI++N+K +GVRL + L+++ +++
Sbjct: 239 DGKFPDYNRVIPMDNNRIVVLNRLALLGALERSSILANEKFRGVRLQLSAGSLRVSCTNN 298
>gi|289662283|ref|ZP_06483864.1| DNA polymerase III subunit beta [Xanthomonas campestris pv.
vasculorum NCPPB 702]
gi|289667648|ref|ZP_06488723.1| DNA polymerase III subunit beta [Xanthomonas campestris pv.
musacearum NCPPB 4381]
Length = 366
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 111/295 (37%), Positives = 176/295 (59%), Gaps = 10/295 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A L PL V+++VE++ LP+L+N+LV ++S TD EV++ + T V
Sbjct: 6 QREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTMVEDAQDG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ ARK DILR+LP+ +VTI + +++G+S+FTL TL A ++P S
Sbjct: 66 -ETTIPARKLFDILRALPDGSRVTISQTGDKVTVQAGRSRFTLATLPANDFP-----SVD 119
Query: 128 DFEFT----LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
+ E T + + LK ++ F++AQQD+RYYLNGLL + + V++DGHRL
Sbjct: 120 EVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLRCVATDGHRLALC 179
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDG 243
++ ++K + II+PRK V LQRLLE + VEL++ + I++ ++ SKLIDG
Sbjct: 180 EMELEKAGGAKRQIIVPRKGVTELQRLLEGADREVELEVGRSHIRVKRGDVTFTSKLIDG 239
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
+F DY+ VI ++ V+R L SLQR +I+SN+K +GVR+ + P LKI+
Sbjct: 240 RFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISA 294
>gi|238759585|ref|ZP_04620747.1| DNA polymerase III subunit beta [Yersinia aldovae ATCC 35236]
gi|238702244|gb|EEP94799.1| DNA polymerase III subunit beta [Yersinia aldovae ATCC 35236]
Length = 366
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 177/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ A+ + +
Sbjct: 6 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALSHPHEQ 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++T+ ++ + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDIWRGLPEGAEITVALDGDRLLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ + P+ L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQTLPSHS-VIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSHNQLKITANNPEQEEA 302
>gi|123444341|ref|YP_001008306.1| DNA polymerase III subunit beta [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|332163520|ref|YP_004300097.1| DNA polymerase III subunit beta [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386310451|ref|YP_006006507.1| DNA polymerase III subunit beta [Yersinia enterocolitica subsp.
palearctica Y11]
gi|418241570|ref|ZP_12868096.1| DNA polymerase III subunit beta [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|420260613|ref|ZP_14763290.1| DNA polymerase III subunit beta [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|433548894|ref|ZP_20504940.1| DNA polymerase III beta subunit [Yersinia enterocolitica IP 10393]
gi|122091302|emb|CAL14188.1| DNA polymerase III, beta subunit protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|318608024|emb|CBY29522.1| DNA polymerase III beta subunit [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325667750|gb|ADZ44394.1| DNA polymerase III subunit beta [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|351778984|gb|EHB21111.1| DNA polymerase III subunit beta [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|404511948|gb|EKA25806.1| DNA polymerase III subunit beta [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|431789935|emb|CCO67980.1| DNA polymerase III beta subunit [Yersinia enterocolitica IP 10393]
Length = 366
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 178/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ A+ + +
Sbjct: 6 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALSHPHEQ 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++T+ ++ + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDIWRGLPEGAEITVALDGDRLLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCAMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ + P+ L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQTLPSHS-VIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLKASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITANNPEQEEA 302
>gi|271498580|ref|YP_003331605.1| DNA polymerase III subunit beta [Dickeya dadantii Ech586]
gi|270342135|gb|ACZ74900.1| DNA polymerase III, beta subunit [Dickeya dadantii Ech586]
Length = 366
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 180/299 (60%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + ++S TD E+++ + A+ +
Sbjct: 6 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQVSEGRLSLTGTDLEMEMVAHLALTQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARK DI R LP+ ++++ +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKLFDICRGLPDGAEISVTLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETGGEELRTVATDGHRLAVCAMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + + L ++ R +I+SN+K +GVRL + N L+IT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEASCDLLRQAFSRAAILSNEKFRGVRLYLNQNQLRITANNPEQEEA 302
>gi|359394557|ref|ZP_09187610.1| DNA polymerase III subunit beta [Halomonas boliviensis LC1]
gi|357971804|gb|EHJ94249.1| DNA polymerase III subunit beta [Halomonas boliviensis LC1]
Length = 367
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 177/298 (59%), Gaps = 1/298 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ A+L PL +V +VE++ LP+LSN+L+ +++S TD EV++ T +
Sbjct: 7 REALLRPLTLVAGVVERRQTLPVLSNVLIQVEGDQVSLTGTDLEVELVGRTVASQVDQMG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
+ V ARK +DI +SLP+ + + +E ++SG+S+FTL TL E+P + ++
Sbjct: 67 SATVPARKLMDICKSLPDHSDIQLAVEEGRAVLRSGRSRFTLSTLPVAEFPNIE-DADGS 125
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
E ++ + TLK ++ F++AQQD+RYYLNG+LL Q + V++DGHRL I+
Sbjct: 126 QEISVPRGTLKHLIEATSFAMAQQDVRYYLNGMLLEIQSNLLRTVATDGHRLAMCSRPIE 185
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
S +I+PRK + L RLL++ + PV L + ++ ++ + SKLIDGKF DY
Sbjct: 186 VSVSQSQKLIVPRKGILELSRLLDDSDEPVSLTLGSSHVRAHTGDFTFTSKLIDGKFPDY 245
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ V+ +K + R +L + L R +I+SN+K +GVRL ++ N LK+ ++ +E+A
Sbjct: 246 ERVVPRNGDKVLIAERAELRQVLSRTAILSNEKYRGVRLYLEENNLKVMANNPEQEEA 303
>gi|322830735|ref|YP_004210762.1| DNA polymerase III subunit beta [Rahnella sp. Y9602]
gi|383187969|ref|YP_005198097.1| DNA polymerase III subunit beta [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
gi|384255907|ref|YP_005399841.1| DNA polymerase III subunit beta [Rahnella aquatilis HX2]
gi|321165936|gb|ADW71635.1| DNA polymerase III, beta subunit [Rahnella sp. Y9602]
gi|371586227|gb|AEX49957.1| DNA polymerase III, beta subunit [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
gi|380751883|gb|AFE56274.1| DNA polymerase III subunit beta [Rahnella aquatilis HX2]
Length = 366
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 178/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ +S TD E+++ A+ + +
Sbjct: 6 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTDGALSLTGTDLEMEMVAKVALSQPHEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++++ ++ M +KSG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEISVALDGDRMLVKSGRSRFSLSTLPATDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ + ++L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVMELVRLLDGGDTTLQLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLQAGCDLLKQAFARAAILSNEKFRGVRLYVSHNQLKITANNPEQEEA 302
>gi|307133246|ref|YP_003885262.1| DNA polymerase III subunit beta [Dickeya dadantii 3937]
gi|306530775|gb|ADN00706.1| DNA polymerase III, beta subunit [Dickeya dadantii 3937]
Length = 366
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 180/299 (60%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + ++S TD E+++ + A+ +
Sbjct: 6 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQVSEGRLSLTGTDLEMEMVAHLALTQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARK DI R LP+ ++++ +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKLFDICRGLPDGAEISVTLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETSGEELRTVATDGHRLAVCSMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + + L ++ R +I+SN+K +GVRL + N L+IT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEASCDLLRQAFSRAAILSNEKFRGVRLYLNQNQLRITANNPEQEEA 302
>gi|381169642|ref|ZP_09878806.1| DNA polymerase III, beta subunit [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|380689930|emb|CCG35293.1| DNA polymerase III, beta subunit [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
Length = 366
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 111/295 (37%), Positives = 176/295 (59%), Gaps = 10/295 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A L PL V+++VE++ LP+L+N+LV ++S TD EV++ + T V
Sbjct: 6 QREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTLVEDAQDG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ ARK DILR+LP+ +VTI + +++G+S+FTL TL A ++P S
Sbjct: 66 -ETTIPARKLFDILRALPDGSRVTISQTGDKVTVQAGRSRFTLATLPANDFP-----SVD 119
Query: 128 DFEFT----LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
+ E T + + LK ++ F++AQQD+RYYLNGLL + + V++DGHRL
Sbjct: 120 EVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLRCVATDGHRLALC 179
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDG 243
++ ++K + II+PRK V LQRLLE + VEL++ + I++ ++ SKLIDG
Sbjct: 180 EMELEKAGGAKRQIIVPRKGVTELQRLLEGADREVELEVGRSHIRVKRGDVTFTSKLIDG 239
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
+F DY+ VI ++ V+R L SLQR +I+SN+K +GVR+ + P LKI+
Sbjct: 240 RFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISA 294
>gi|353251727|pdb|3PWE|A Chain A, Crystal Structure Of The E. Coli Beta Clamp Mutant R103c,
I305c, C260s, C333s At 2.2a Resolution
gi|353251728|pdb|3PWE|B Chain B, Crystal Structure Of The E. Coli Beta Clamp Mutant R103c,
I305c, C260s, C333s At 2.2a Resolution
Length = 366
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 109/307 (35%), Positives = 178/307 (57%), Gaps = 3/307 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGCSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ +NP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKAS 307
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGSDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAE 303
Query: 308 ST-DLIY 313
D+ Y
Sbjct: 304 ECLDVTY 310
>gi|283787599|ref|YP_003367464.1| DNA polymerase III subunit beta [Citrobacter rodentium ICC168]
gi|282951053|emb|CBG90731.1| DNA polymerase III beta-subunit [Citrobacter rodentium ICC168]
Length = 366
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 175/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALIQAHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ +NP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRMLDGGDNPLHVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|90019651|ref|YP_525478.1| DNA polymerase III subunit beta [Saccharophagus degradans 2-40]
gi|89949251|gb|ABD79266.1| DNA polymerase III, beta subunit [Saccharophagus degradans 2-40]
Length = 367
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 114/306 (37%), Positives = 180/306 (58%), Gaps = 3/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ +V+ E IL PLQ+V +VE++ LP+L+N+L+ E++S TD EV+I
Sbjct: 1 MKFIVSRE--TILKPLQLVAGVVERRQTLPVLANVLIVLEGEQLSLTGTDLEVEIVGRVT 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
V S I V A+KF+DI R+LP+ + ++++ + +KSG+S+FTL +L A E+P
Sbjct: 59 VDQAISEGEITVPAKKFLDICRALPDGSVIEFTLDDQKVTVKSGRSRFTLSSLSANEFPA 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ S D F+ QK +K +++ F++AQQD+RYYLNG+L + + VS+DGHRL
Sbjct: 119 VEQGSN-DINFSCEQKEVKRLIDRTAFAMAQQDVRYYLNGMLWEVRAGALRVVSTDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
I+ + I+PRK V L RLL + E VEL + N I+ + SKL
Sbjct: 178 AMCTRPINIDVAEPVQAILPRKGVIELSRLLNDSEENVELTMGPNHIRATTTEYTFTSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
+DGKF DY+ V+ +K L R L ++ R +I+SN+K +GVRL+++ L I ++
Sbjct: 238 VDGKFPDYERVLPKGGDKIVLGERAVLKQAFARTAILSNEKYRGVRLLLETGQLTIIANN 297
Query: 301 SNREKA 306
+E+A
Sbjct: 298 PEQEEA 303
>gi|294638326|ref|ZP_06716579.1| DNA polymerase III, beta subunit [Edwardsiella tarda ATCC 23685]
gi|451966287|ref|ZP_21919541.1| DNA polymerase III subunit beta [Edwardsiella tarda NBRC 105688]
gi|291088579|gb|EFE21140.1| DNA polymerase III, beta subunit [Edwardsiella tarda ATCC 23685]
gi|451315066|dbj|GAC64903.1| DNA polymerase III subunit beta [Edwardsiella tarda NBRC 105688]
Length = 366
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 177/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ ++ PLQ V S + + LPIL N+L+ +S TD E+++ + + +
Sbjct: 6 EREHLIKPLQQVSSPLGGRPTLPILGNLLLQVEDGHLSLTGTDLEMEMVARVPLSQPHEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF+DI R LP+ ++++ ++ M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFLDICRGLPDGAEISVALDGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S +I+PRK V L RLL+ E P+ L+I +N ++ SKL+DG+F D
Sbjct: 185 GQSLPHHS-VIVPRKGVIELMRLLDGGETPLRLQIGSNNLRAHVGGFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ ++L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDELKQAFARAAILSNEKFRGVRLHVSHNQLKITANNPEQEEA 302
>gi|352105526|ref|ZP_08960841.1| DNA polymerase III subunit beta [Halomonas sp. HAL1]
gi|350598399|gb|EHA14519.1| DNA polymerase III subunit beta [Halomonas sp. HAL1]
Length = 367
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 175/298 (58%), Gaps = 1/298 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ A+L PL +V +VE++ LP+LSN+L+ +++S TD EV++ T + +
Sbjct: 7 REALLRPLTLVAGVVERRQTLPVLSNVLIQVEGDQVSLTGTDLEVELVGRTVASQVDQAG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
V ARK +DI +SLP+ + + +E ++SG+S+FTL TL E+P + ++
Sbjct: 67 AATVPARKLMDICKSLPDQSDIQLAVEEGRAVLRSGRSRFTLSTLPVAEFPNIE-DADGS 125
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
E ++ + TLK ++ F++AQQD+RYYLNG+LL Q + V++DGHRL I+
Sbjct: 126 QEISVPRGTLKHLIEATSFAMAQQDVRYYLNGMLLEIQSNLLRTVATDGHRLAMCSRPIE 185
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
S +I+PRK + L RLL++ + PV L + ++ ++ + SKLIDGKF DY
Sbjct: 186 VSVSQSQKLIVPRKGILELSRLLDDSDEPVSLTLGSSHVRAHTGDFTFTSKLIDGKFPDY 245
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ V+ +K + R L + L R +I+SN+K +GVRL + N LK+ ++ +E+A
Sbjct: 246 ERVVPRNGDKVLIAERAALRQVLSRTAILSNEKYRGVRLYFEENNLKVMANNPEQEEA 303
>gi|386825671|ref|ZP_10112791.1| DNA polymerase III subunit beta [Serratia plymuthica PRI-2C]
gi|386377413|gb|EIJ18230.1| DNA polymerase III subunit beta [Serratia plymuthica PRI-2C]
Length = 366
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 180/299 (60%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ A+ + +
Sbjct: 6 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALSQPHEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++T+ +E++ M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEITVTLESERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
++ S S +I+PRK V L RLL+ + ++L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQQLPSHS-VIVPRKGVMELVRLLDGGDTLLQLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITANNPEQEEA 302
>gi|284007064|emb|CBA72339.1| DNA polymerase III subunit beta [Arsenophonus nasoniae]
Length = 366
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 180/299 (60%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ + +S TD EV++ + S
Sbjct: 6 EREQLLKPLQQVSGPLGGRPTLPILGNLLLQVSENILSLTGTDLEVEMVAKVTLTQPGES 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARKF DI R LP+ ++ + +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPARKFFDIWRGLPDGAEIKVTLEGDRLLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EF L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL +NI
Sbjct: 125 EVEFELPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGQELRTVATDGHRLAVCSLNI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
DK + S +I+PRK V RLL++ + ++L+I +N I+ + SKL+DG+F D
Sbjct: 185 DKDLPTHS-VIVPRKGVVEFMRLLDSSDESLKLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + +KL ++ R +I+SN+K +GVRL I N L+IT ++ +E++
Sbjct: 244 YRRVLPKNPDKTLTADCDKLKQAFSRAAILSNEKFRGVRLYISENQLRITANNPEQEES 302
>gi|170724372|ref|YP_001758398.1| DNA polymerase III subunit beta [Shewanella woodyi ATCC 51908]
gi|169809719|gb|ACA84303.1| DNA polymerase III, beta subunit [Shewanella woodyi ATCC 51908]
Length = 366
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 185/301 (61%), Gaps = 2/301 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
+++A+L PLQ+V VE+++ LPIL+N+LV + + TD EV++ +
Sbjct: 6 DRDALLKPLQLVTGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGQVQLEGEVQE 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ A+KF+DI++SLP+ ++ I + + ++SG+S+FTL TL A+EYP + +
Sbjct: 66 GRTTIPAKKFLDIVKSLPDQVELKIEQQENRLLLRSGRSRFTLATLPAEEYPNVEA-FQA 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFT++Q TLK +++ FS+A QD+RYYLNGLLL + + A+++DGHRL I
Sbjct: 125 EIEFTINQGTLKSLIDATQFSMANQDVRYYLNGLLLETEGNVLRAIATDGHRLALSHRQI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+I+PRK V LQRL E +E + + I +N I+ ++ SKL+DG+F D
Sbjct: 185 QDTLPE-KQVIVPRKGVVELQRLFEGEELDITIAIGDNAIRATTASAVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKAS 307
Y+ V+ +K + +RN L ++L R SI+SN+K +GVR+ ++ N +KIT ++ +E+A
Sbjct: 244 YRRVLPKGGDKVVIASRNHLKQALLRASILSNEKFRGVRVQLEENLIKITANNPEQEEAE 303
Query: 308 S 308
Sbjct: 304 E 304
>gi|387887352|ref|YP_006317650.1| DNA polymerase III [Escherichia blattae DSM 4481]
gi|414595081|ref|ZP_11444712.1| DNA polymerase III subunit beta [Escherichia blattae NBRC 105725]
gi|386922185|gb|AFJ45139.1| DNA polymerase III [Escherichia blattae DSM 4481]
gi|403194001|dbj|GAB82364.1| DNA polymerase III subunit beta [Escherichia blattae NBRC 105725]
Length = 366
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 175/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ + +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVENGTLSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIALTLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWPI 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
D EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + +
Sbjct: 125 DVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
S S +I+PRK V L R+L+ E P+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GTSLPSHS-VIVPRKGVIELMRMLDGGETPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEASCDLLKQAFSRAAILSNEKFRGVRLFVADNQLKITANNPEQEEA 302
>gi|283836134|ref|ZP_06355875.1| hypothetical protein CIT292_10555 [Citrobacter youngae ATCC 29220]
gi|291068323|gb|EFE06432.1| DNA polymerase III, beta subunit [Citrobacter youngae ATCC 29220]
Length = 366
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 175/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALIQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ +NP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQPLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|374855025|dbj|BAL57893.1| DNA polymerase III subunit beta [uncultured beta proteobacterium]
Length = 367
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 180/296 (60%), Gaps = 3/296 (1%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
+++ ++ +L PL IVEK+ PIL L+ +N + ++ +TD E QI +G
Sbjct: 1 MLIRAPRDTLLTPLAAAAGIVEKRQTKPILGCFLLERNDDGLTVTATDLEAQIVVRQPLG 60
Query: 63 -YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIM 121
+ V A+K +DIL+SLP+ +V + E + + SG+S+FTL TL A+++P +
Sbjct: 61 ELAGENGACAVPAKKLLDILKSLPDGAEVQLLAEAHTLKVTSGRSRFTLHTLPAQDFPRL 120
Query: 122 TLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLT 181
T S+ D + TL+Q+TL+ ++ + F++AQQD+RYYLNGL +N+ V++DGHRL
Sbjct: 121 TPPSEGD-QLTLTQRTLRRLMALTAFAMAQQDVRYYLNGLFFHLHDQNLHVVATDGHRLA 179
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
+ + + +F + I+PRKTV LQRLL + + PV + I+ Q+ ++ SK+I
Sbjct: 180 HVEEAM-PEFRDEREAILPRKTVLELQRLLSDSDQPVAITIAERQVVFTTGAMQFTSKII 238
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
+GKF DY+ VI + + +R +LLR+LQR+++++ DKL+ ++ + ++I+
Sbjct: 239 EGKFPDYRRVIPTSHPVRIVFDRVELLRALQRVAVLAEDKLRPIKFAFETGLVRIS 294
>gi|423142309|ref|ZP_17129947.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|379050238|gb|EHY68131.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
Length = 366
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 173/299 (57%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ + +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLSQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELRTVATDGHRLAVCSMPL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ ENP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 EASLPSHS-VIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSGNQLKITANNPEQEEA 302
>gi|168235477|ref|ZP_02660535.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|194738233|ref|YP_002116781.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|194713735|gb|ACF92956.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197291529|gb|EDY30881.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
Length = 366
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 173/299 (57%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ + +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLSQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELRTVATDGHRLAVCSMPL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ ENP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 EASLPSHS-VIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|197262814|ref|ZP_03162888.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197241069|gb|EDY23689.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
Length = 366
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 173/299 (57%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ + +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLSQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELRTVATDGHRLAVCSMPL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ ENP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 EASLPSHS-VIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|163751708|ref|ZP_02158927.1| DNA polymerase III, beta subunit [Shewanella benthica KT99]
gi|161328447|gb|EDP99603.1| DNA polymerase III, beta subunit [Shewanella benthica KT99]
Length = 366
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 115/302 (38%), Positives = 185/302 (61%), Gaps = 4/302 (1%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
+++A+L PLQ+V VE+++ LPIL+N+LV + + TD EV++ +
Sbjct: 6 DRDALLKPLQLVNGAVERRHNLPILANLLVEVSGHTLKMTGTDLEVELVGQVQLEGDVEE 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP-IMTLNSK 126
+ A+KF+DI++SLP+ ++ I + + ++SG+S+FTL TL A+EYP + S
Sbjct: 66 GRTTIPAKKFLDIVKSLPDQVEIKIEQQENRLLLRSGRSRFTLATLPAEEYPNVEAFES- 124
Query: 127 YDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVN 186
D EFT+ Q LK +++ FS+A QD+RYYLNGLLL + A+++DGHRL
Sbjct: 125 -DIEFTIKQGILKSLIDATQFSMANQDVRYYLNGLLLETDGNVLRAIATDGHRLALSHRK 183
Query: 187 IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFL 246
I+ +I+PRK V LQRL E ++ V + I +N I+ S+ + SKLIDG+F
Sbjct: 184 IEANLPK-KQVIVPRKGVVELQRLYEGEDLDVTIAIGDNAIRATTSSAVLTSKLIDGRFP 242
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
DY+ V+ +K + +RN+L ++L R SI+SN+K +GVR+ ++ N LKIT ++ +E+A
Sbjct: 243 DYRRVLPKGGDKIVIASRNQLKQALLRASILSNEKFRGVRVQLENNLLKITANNPEQEEA 302
Query: 307 SS 308
Sbjct: 303 EE 304
>gi|417250215|ref|ZP_12041999.1| DNA polymerase III, beta subunit [Escherichia coli 4.0967]
gi|386220536|gb|EII37000.1| DNA polymerase III, beta subunit [Escherichia coli 4.0967]
Length = 366
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ ++P+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRMLDGGDHPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|420367724|ref|ZP_14868501.1| DNA polymerase III, beta subunit [Shigella flexneri 1235-66]
gi|391322946|gb|EIQ79617.1| DNA polymerase III, beta subunit [Shigella flexneri 1235-66]
Length = 366
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 175/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALIQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ +NP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQPLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|16762488|ref|NP_458105.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29143976|ref|NP_807318.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56415710|ref|YP_152785.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62182325|ref|YP_218742.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161505632|ref|YP_001572744.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:- str. RSK2980]
gi|161616955|ref|YP_001590920.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167548873|ref|ZP_02342632.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|168233392|ref|ZP_02658450.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168260378|ref|ZP_02682351.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168464832|ref|ZP_02698724.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168818303|ref|ZP_02830303.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194471413|ref|ZP_03077397.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|197251713|ref|YP_002148775.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197364638|ref|YP_002144275.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|198245644|ref|YP_002217787.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|204928586|ref|ZP_03219785.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205354576|ref|YP_002228377.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207859063|ref|YP_002245714.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|213648785|ref|ZP_03378838.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213865135|ref|ZP_03387254.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|224585636|ref|YP_002639435.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|238913090|ref|ZP_04656927.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|289826404|ref|ZP_06545516.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|340001310|ref|YP_004732194.1| DNA polymerase III subunit beta [Salmonella bongori NCTC 12419]
gi|375003706|ref|ZP_09728045.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|375116670|ref|ZP_09761840.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|375121306|ref|ZP_09766473.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|375125462|ref|ZP_09770626.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|378957318|ref|YP_005214805.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
enterica serovar Gallinarum/pullorum str. RKS5078]
gi|378961840|ref|YP_005219326.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|409247524|ref|YP_006888222.1| DNA polymerase III, beta-subunit [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|416421132|ref|ZP_11689317.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|416432490|ref|ZP_11696215.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|416437682|ref|ZP_11698968.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|416443015|ref|ZP_11702725.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|416450223|ref|ZP_11707356.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|416461185|ref|ZP_11715233.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|416463952|ref|ZP_11716146.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|416474094|ref|ZP_11719967.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|416488817|ref|ZP_11725926.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|416496400|ref|ZP_11729122.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|416508482|ref|ZP_11736118.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|416517461|ref|ZP_11739492.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|416531240|ref|ZP_11745525.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|416540252|ref|ZP_11750374.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|416540597|ref|ZP_11750453.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|416548717|ref|ZP_11755007.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|416556814|ref|ZP_11759138.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|416567523|ref|ZP_11764295.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|416581084|ref|ZP_11772345.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|416585001|ref|ZP_11774589.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|416591836|ref|ZP_11778750.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|416602725|ref|ZP_11785390.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|416603601|ref|ZP_11785536.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|416610755|ref|ZP_11790299.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|416624905|ref|ZP_11798359.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|416626857|ref|ZP_11798864.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|416636923|ref|ZP_11803284.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|416649761|ref|ZP_11810088.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|416658373|ref|ZP_11814270.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|416664808|ref|ZP_11816352.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|416682274|ref|ZP_11823993.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|416698042|ref|ZP_11828326.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|416703453|ref|ZP_11829580.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|416711818|ref|ZP_11835563.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|416716047|ref|ZP_11838558.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|416726999|ref|ZP_11847028.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|416730527|ref|ZP_11848682.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|416739877|ref|ZP_11854044.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|416744322|ref|ZP_11856589.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|416755059|ref|ZP_11861792.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|416760526|ref|ZP_11864851.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|416769805|ref|ZP_11871243.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|417327630|ref|ZP_12112999.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Adelaide str. A4-669]
gi|417337492|ref|ZP_12119620.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Alachua str. R6-377]
gi|417344854|ref|ZP_12125107.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Baildon str. R6-199]
gi|417353524|ref|ZP_12130269.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Gaminara str. A4-567]
gi|417359568|ref|ZP_12133911.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Give str. S5-487]
gi|417376830|ref|ZP_12145905.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Inverness str. R8-3668]
gi|417394473|ref|ZP_12156639.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Minnesota str. A4-603]
gi|417436057|ref|ZP_12161601.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Mississippi str. A4-633]
gi|417467582|ref|ZP_12165163.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. S5-403]
gi|417489367|ref|ZP_12172824.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Rubislaw str. A4-653]
gi|417514555|ref|ZP_12178326.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Senftenberg str. A4-543]
gi|417519434|ref|ZP_12181580.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Uganda str. R8-3404]
gi|417534975|ref|ZP_12188592.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Urbana str. R8-2977]
gi|417542714|ref|ZP_12194080.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Wandsworth str. A4-580]
gi|418483087|ref|ZP_13052098.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|418490244|ref|ZP_13056793.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|418497014|ref|ZP_13063438.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|418501817|ref|ZP_13068195.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|418503450|ref|ZP_13069813.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|418506296|ref|ZP_13072630.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|418511557|ref|ZP_13077810.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|418526533|ref|ZP_13092508.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|418760217|ref|ZP_13316376.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|418766343|ref|ZP_13322421.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|418771095|ref|ZP_13327109.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|418777079|ref|ZP_13333014.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|418782073|ref|ZP_13337941.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|418782767|ref|ZP_13338626.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|418787245|ref|ZP_13343049.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|418791533|ref|ZP_13347291.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|418797121|ref|ZP_13352811.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|418804150|ref|ZP_13359760.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|419788088|ref|ZP_14313786.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|419791060|ref|ZP_14316716.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|421356460|ref|ZP_15806782.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|421360976|ref|ZP_15811246.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|421366026|ref|ZP_15816232.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|421373114|ref|ZP_15823258.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|421377378|ref|ZP_15827475.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|421379339|ref|ZP_15829409.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|421386663|ref|ZP_15836673.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|421390906|ref|ZP_15840880.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|421392730|ref|ZP_15842681.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|421397304|ref|ZP_15847221.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|421404346|ref|ZP_15854189.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|421406341|ref|ZP_15856156.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|421410679|ref|ZP_15860456.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|421417848|ref|ZP_15867557.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|421422876|ref|ZP_15872542.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|421426912|ref|ZP_15876539.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|421428874|ref|ZP_15878476.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|421435963|ref|ZP_15885498.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|421437933|ref|ZP_15887438.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|421445058|ref|ZP_15894487.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|421450008|ref|ZP_15899387.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|421886827|ref|ZP_16317997.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|436611304|ref|ZP_20513869.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|436764422|ref|ZP_20520638.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|436799981|ref|ZP_20524185.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|436809667|ref|ZP_20529014.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|436817733|ref|ZP_20534622.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436831579|ref|ZP_20536240.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436847721|ref|ZP_20539783.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436855383|ref|ZP_20544638.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436862359|ref|ZP_20549090.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436868290|ref|ZP_20553136.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|436880672|ref|ZP_20560360.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436886081|ref|ZP_20562645.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436893114|ref|ZP_20567161.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436905863|ref|ZP_20574839.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436913607|ref|ZP_20578898.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436916010|ref|ZP_20580156.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436927650|ref|ZP_20587401.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436936816|ref|ZP_20592169.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436943843|ref|ZP_20596666.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436952371|ref|ZP_20601152.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436962353|ref|ZP_20605531.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|436971797|ref|ZP_20610023.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|436976989|ref|ZP_20612162.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|436999186|ref|ZP_20620096.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437002027|ref|ZP_20621180.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437013304|ref|ZP_20625172.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437028789|ref|ZP_20630787.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437040205|ref|ZP_20634592.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|437047417|ref|ZP_20638862.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437061072|ref|ZP_20646788.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437067245|ref|ZP_20650263.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437076685|ref|ZP_20655028.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437079936|ref|ZP_20656811.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437087267|ref|ZP_20661077.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|437100940|ref|ZP_20666195.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|437121747|ref|ZP_20671924.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|437127395|ref|ZP_20674742.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|437135028|ref|ZP_20679173.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|437147257|ref|ZP_20686786.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|437153965|ref|ZP_20690825.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|437163553|ref|ZP_20696735.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|437164522|ref|ZP_20697160.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|437178295|ref|ZP_20704604.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|437181639|ref|ZP_20706664.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|437242029|ref|ZP_20714467.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|437261433|ref|ZP_20718481.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|437270718|ref|ZP_20723388.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|437279502|ref|ZP_20727750.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|437283682|ref|ZP_20729215.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|437304755|ref|ZP_20734096.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|437329300|ref|ZP_20741257.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|437336250|ref|ZP_20742971.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|437362654|ref|ZP_20748397.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|437418637|ref|ZP_20754304.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|437446500|ref|ZP_20758762.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|437458963|ref|ZP_20760932.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|437471469|ref|ZP_20765236.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|437493500|ref|ZP_20772151.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|437503091|ref|ZP_20774802.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|437522117|ref|ZP_20779001.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|437561152|ref|ZP_20786320.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|437569746|ref|ZP_20788034.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|437592800|ref|ZP_20795261.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|437598781|ref|ZP_20796755.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|437617942|ref|ZP_20803010.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|437637807|ref|ZP_20807396.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|437655374|ref|ZP_20810429.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|437680121|ref|ZP_20818330.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|437699241|ref|ZP_20823432.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|437714653|ref|ZP_20827691.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|437734127|ref|ZP_20832182.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|437746687|ref|ZP_20833587.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|437801902|ref|ZP_20838267.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|437816910|ref|ZP_20842692.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
gi|437913170|ref|ZP_20850371.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 6.0562-1]
gi|437961018|ref|ZP_20852425.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|438090329|ref|ZP_20860535.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|438097432|ref|ZP_20862354.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|438107609|ref|ZP_20866821.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|438128083|ref|ZP_20872998.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|440762646|ref|ZP_20941700.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|440768374|ref|ZP_20947345.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|440775241|ref|ZP_20954125.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|445131287|ref|ZP_21381686.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|445142736|ref|ZP_21386227.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|445153227|ref|ZP_21391299.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|445167401|ref|ZP_21394388.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|445181339|ref|ZP_21398318.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|445223193|ref|ZP_21403399.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|445246951|ref|ZP_21408389.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|445329750|ref|ZP_21413607.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|445346093|ref|ZP_21418617.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|445359796|ref|ZP_21423184.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|452122369|ref|YP_007472617.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
gi|25288590|pir||AB0958 DNA polymerase III beta-chain [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|16504793|emb|CAD03158.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29139612|gb|AAO71178.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56129967|gb|AAV79473.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62129958|gb|AAX67661.1| DNA polymerase III, beta-subunit [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|160866979|gb|ABX23602.1| hypothetical protein SARI_03808 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
gi|161366319|gb|ABX70087.1| hypothetical protein SPAB_04776 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194457777|gb|EDX46616.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|195632425|gb|EDX50909.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197096115|emb|CAR61711.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|197215416|gb|ACH52813.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197940160|gb|ACH77493.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|204322019|gb|EDZ07217.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205274357|emb|CAR39382.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205325570|gb|EDZ13409.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205332539|gb|EDZ19303.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205344390|gb|EDZ31154.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205350419|gb|EDZ37050.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|206710866|emb|CAR35230.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|224470164|gb|ACN47994.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|320088258|emb|CBY98020.1| DNA polymerase III, beta-subunit [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|322617250|gb|EFY14155.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322619062|gb|EFY15948.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322625129|gb|EFY21957.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322630180|gb|EFY26951.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322634394|gb|EFY31128.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322635279|gb|EFY31994.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322642897|gb|EFY39481.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322647623|gb|EFY44110.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322650571|gb|EFY46978.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322656403|gb|EFY52695.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322661583|gb|EFY57806.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322661664|gb|EFY57883.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322668222|gb|EFY64380.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322672849|gb|EFY68957.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322674970|gb|EFY71056.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322683660|gb|EFY79673.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322687736|gb|EFY83705.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|322716816|gb|EFZ08387.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|323192049|gb|EFZ77284.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323200531|gb|EFZ85609.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323204957|gb|EFZ89942.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323211772|gb|EFZ96605.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323218634|gb|EGA03341.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323220035|gb|EGA04505.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323224805|gb|EGA09070.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323232486|gb|EGA16588.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323235261|gb|EGA19346.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323241049|gb|EGA25086.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323241401|gb|EGA25433.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323248632|gb|EGA32562.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323252069|gb|EGA35929.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323258627|gb|EGA42290.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323262342|gb|EGA45900.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323268178|gb|EGA51654.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323270592|gb|EGA54037.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|326625573|gb|EGE31918.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|326629712|gb|EGE36055.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|339514672|emb|CCC32442.1| DNA polymerase III beta-subunit [Salmonella bongori NCTC 12419]
gi|353074621|gb|EHB40382.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|353564093|gb|EHC30264.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Gaminara str. A4-567]
gi|353564417|gb|EHC30496.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Alachua str. R6-377]
gi|353570096|gb|EHC34453.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Adelaide str. A4-669]
gi|353589181|gb|EHC48035.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Give str. S5-487]
gi|353591791|gb|EHC49971.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Inverness str. R8-3668]
gi|353605406|gb|EHC59925.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Minnesota str. A4-603]
gi|353613527|gb|EHC65609.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Mississippi str. A4-633]
gi|353629570|gb|EHC77344.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. S5-403]
gi|353631577|gb|EHC78848.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Rubislaw str. A4-653]
gi|353633468|gb|EHC80264.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Senftenberg str. A4-543]
gi|353646620|gb|EHC89976.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Uganda str. R8-3404]
gi|353657639|gb|EHC98026.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Urbana str. R8-2977]
gi|353658117|gb|EHC98391.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Wandsworth str. A4-580]
gi|357207929|gb|AET55975.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
enterica serovar Gallinarum/pullorum str. RKS5078]
gi|357953658|gb|EHJ80126.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Baildon str. R6-199]
gi|363549484|gb|EHL33824.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|363552305|gb|EHL36598.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|363559294|gb|EHL43462.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|363560620|gb|EHL44762.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|363570839|gb|EHL54761.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|363578665|gb|EHL62468.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|363579178|gb|EHL62970.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|366055141|gb|EHN19478.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|366062070|gb|EHN26309.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|366065544|gb|EHN29733.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|366066525|gb|EHN30690.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|366072850|gb|EHN36932.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|366083433|gb|EHN47355.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|366084599|gb|EHN48505.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|366828645|gb|EHN55527.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|372205495|gb|EHP19004.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|374355712|gb|AEZ47473.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|379983633|emb|CCF90270.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|392618307|gb|EIX00709.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|392621415|gb|EIX03773.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|392735111|gb|EIZ92291.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|392738395|gb|EIZ95540.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|392743380|gb|EJA00453.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|392744640|gb|EJA01685.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|392744972|gb|EJA02013.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|392759222|gb|EJA16077.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|392766573|gb|EJA23347.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|392769475|gb|EJA26207.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|392771637|gb|EJA28354.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|392771797|gb|EJA28510.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|395991648|gb|EJI00771.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|395993933|gb|EJI03022.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|395994117|gb|EJI03197.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|395998172|gb|EJI07205.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|395999056|gb|EJI08079.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|396006967|gb|EJI15927.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|396011983|gb|EJI20883.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|396013077|gb|EJI21966.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|396020247|gb|EJI29093.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|396026346|gb|EJI35115.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|396034097|gb|EJI42800.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|396034222|gb|EJI42923.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|396038973|gb|EJI47604.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|396039540|gb|EJI48165.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|396048152|gb|EJI56712.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|396053363|gb|EJI61859.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|396055642|gb|EJI64125.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|396060469|gb|EJI68913.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|396066374|gb|EJI74738.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|396067971|gb|EJI76320.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|396074686|gb|EJI82971.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|434942242|gb|ELL48575.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|434959347|gb|ELL52821.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|434964656|gb|ELL57653.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|434966181|gb|ELL59068.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|434969520|gb|ELL62213.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|434971274|gb|ELL63808.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434981983|gb|ELL73823.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434991198|gb|ELL82712.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434992530|gb|ELL83979.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434999015|gb|ELL90223.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|435004319|gb|ELL95293.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|435004888|gb|ELL95830.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435012265|gb|ELM02950.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435015399|gb|ELM05938.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435019818|gb|ELM10253.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435023959|gb|ELM14192.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435033287|gb|ELM23190.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435035908|gb|ELM25747.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435037408|gb|ELM27219.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435041690|gb|ELM31430.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435049550|gb|ELM39076.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|435049758|gb|ELM39273.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435056244|gb|ELM45636.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|435060747|gb|ELM49993.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435071024|gb|ELM59982.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435074320|gb|ELM63153.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435084014|gb|ELM72608.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435087082|gb|ELM75601.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435087542|gb|ELM76038.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|435089755|gb|ELM78173.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435096636|gb|ELM84903.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435100344|gb|ELM88521.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435104445|gb|ELM92499.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435114179|gb|ELN01992.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435118257|gb|ELN05924.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|435124313|gb|ELN11779.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|435125357|gb|ELN12801.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|435129667|gb|ELN16956.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|435134097|gb|ELN21231.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|435139056|gb|ELN26062.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|435140661|gb|ELN27621.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|435140861|gb|ELN27805.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|435153597|gb|ELN40204.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|435154801|gb|ELN41360.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|435162787|gb|ELN48945.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|435166153|gb|ELN52154.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|435170855|gb|ELN56582.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|435170923|gb|ELN56648.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|435178346|gb|ELN63578.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|435186653|gb|ELN71471.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|435187672|gb|ELN72416.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|435190402|gb|ELN74989.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|435197680|gb|ELN81957.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|435201869|gb|ELN85742.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|435209769|gb|ELN93056.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|435209871|gb|ELN93151.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|435222623|gb|ELO04720.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|435227047|gb|ELO08580.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|435227818|gb|ELO09270.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|435237265|gb|ELO17961.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|435237816|gb|ELO18473.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|435250001|gb|ELO29756.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|435250775|gb|ELO30493.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|435252871|gb|ELO32364.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|435259634|gb|ELO38850.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|435263748|gb|ELO42782.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|435271816|gb|ELO50255.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|435272864|gb|ELO51239.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|435274686|gb|ELO52785.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|435278969|gb|ELO56790.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|435285874|gb|ELO63234.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|435286869|gb|ELO64109.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|435303841|gb|ELO79673.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|435308290|gb|ELO83268.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
gi|435312305|gb|ELO86251.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|435316399|gb|ELO89539.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 6.0562-1]
gi|435316423|gb|ELO89561.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|435326957|gb|ELO98736.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|435333436|gb|ELP04255.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|435340187|gb|ELP08767.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|436411408|gb|ELP09360.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|436417637|gb|ELP15528.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|436422759|gb|ELP20587.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|444849222|gb|ELX74337.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|444850491|gb|ELX75590.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|444852882|gb|ELX77956.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|444865281|gb|ELX90055.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|444869280|gb|ELX93873.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|444871697|gb|ELX96099.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|444878381|gb|ELY02500.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|444878495|gb|ELY02610.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|444885381|gb|ELY09172.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|444890240|gb|ELY13595.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|451911373|gb|AGF83179.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
Length = 366
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 173/299 (57%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ + +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLSQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELRTVATDGHRLAVCSMPL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ ENP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 EASLPSHS-VIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|407715266|ref|YP_006836546.1| DNA polymerase III subunit beta [Cycloclasticus sp. P1]
gi|407255602|gb|AFT66043.1| DNA polymerase III, beta subunit [Cycloclasticus sp. P1]
Length = 366
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 116/302 (38%), Positives = 183/302 (60%), Gaps = 2/302 (0%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
+N K +L PLQ V ++E++ LPILSN+ + N+ I F TD EVQ++ + + G
Sbjct: 3 LNINKEDLLEPLQKVFGVIERRQTLPILSNVYLSINNGTIKFTGTDLEVQVSAKSIL-IG 61
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLN 124
S NI + ARK +DI RSLP+ ++ + + + IKSGKS+FTL+TL + EYP+
Sbjct: 62 EDSFNITIPARKLLDICRSLPDHCELNLSFNDGVLIIKSGKSRFTLRTLPSDEYPLFD-E 120
Query: 125 SKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQ 184
S Y + +++Q+ L + F +AQQD+RYYLNGL++ + V+SDGHRL +
Sbjct: 121 SSYLNQISINQEVLLKAFSKTIFCMAQQDVRYYLNGLMMEIVDGELQTVASDGHRLALSK 180
Query: 185 VNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGK 244
ID + S +IIPRK L RL++ E VE+KI+ N IK ++E+ +KLIDG+
Sbjct: 181 NKIDNENQSIDQVIIPRKAAQELLRLMDKFEGAVEIKIAKNSIKFSLGDVELNAKLIDGR 240
Query: 245 FLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNRE 304
F D+ V+ + + SF +N+ +L R+SI+SN+K KG+RL + + I ++ ++
Sbjct: 241 FPDFNNVVPEQSKHSFNINKLSFKSALSRVSILSNEKYKGIRLDLSNQLMTINANNPEQD 300
Query: 305 KA 306
+A
Sbjct: 301 EA 302
>gi|238765485|ref|ZP_04626404.1| DNA polymerase III subunit beta [Yersinia kristensenii ATCC 33638]
gi|238696309|gb|EEP89107.1| DNA polymerase III subunit beta [Yersinia kristensenii ATCC 33638]
Length = 366
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 177/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALSQPHEQ 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++T+ ++ + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDIWRGLPEGAQITVALDGDRLLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCAMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ + P+ L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQTLPSHS-VIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLKASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITANNPEQEEA 302
>gi|319785622|ref|YP_004145097.1| DNA polymerase III subunit beta [Pseudoxanthomonas suwonensis 11-1]
gi|317464134|gb|ADV25866.1| DNA polymerase III, beta subunit [Pseudoxanthomonas suwonensis
11-1]
Length = 366
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 176/289 (60%), Gaps = 2/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PL V+++VE++ LP+L+N LV ++S TD EV++ AV
Sbjct: 6 QREALLKPLAQVVNVVERRQTLPVLANFLVQVQDGQLSLTGTDLEVEMIARAAVEDAVDG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I + ARK +I+R+LP+ +VTI + + +++G+S+F+L TL A ++P + +
Sbjct: 66 -EITIPARKLFEIVRALPDGSRVTISLAGDKVTVQAGRSRFSLATLPANDFPSVD-EVEA 123
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
T+ + LK ++ F++AQQD+RYYLNGLL + +++ V++DGHRL + +
Sbjct: 124 TERITVPEAALKELIERTAFAMAQQDVRYYLNGLLFDLRDQSLRCVATDGHRLALCEAPL 183
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
++ + II+PRK V LQRLLE + +EL++ + I++ ++ SKLIDG+F D
Sbjct: 184 EQPVGTKRQIIVPRKGVTELQRLLEGGDRSLELEVGRSHIRVKRDDVSFTSKLIDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ VI EK V+R + +LQR +I+SN+K +GVR+ I P LKI
Sbjct: 244 YEAVIPIGAEKEVRVDREVIRAALQRAAILSNEKYRGVRVEISPGQLKI 292
>gi|238793144|ref|ZP_04636772.1| DNA polymerase III subunit beta [Yersinia intermedia ATCC 29909]
gi|238727517|gb|EEQ19043.1| DNA polymerase III subunit beta [Yersinia intermedia ATCC 29909]
Length = 366
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 177/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ A+ ++
Sbjct: 6 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALSNPHTQ 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++T+ ++ + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDIWRGLPEGAEITVALDGDRLLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ + P+ L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQTLPSHS-VIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSHNQLKITANNPEQEEA 302
>gi|237729023|ref|ZP_04559504.1| DNA polymerase III subunit beta [Citrobacter sp. 30_2]
gi|365102350|ref|ZP_09332651.1| DNA polymerase III subunit beta [Citrobacter freundii 4_7_47CFAA]
gi|395230778|ref|ZP_10409078.1| DNA polymerase III subunit beta [Citrobacter sp. A1]
gi|421846901|ref|ZP_16280045.1| DNA polymerase III subunit beta [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|424729090|ref|ZP_18157693.1| dna polymerase iii subunit beta [Citrobacter sp. L17]
gi|226909645|gb|EEH95563.1| DNA polymerase III subunit beta [Citrobacter sp. 30_2]
gi|363646078|gb|EHL85326.1| DNA polymerase III subunit beta [Citrobacter freundii 4_7_47CFAA]
gi|394715539|gb|EJF21353.1| DNA polymerase III subunit beta [Citrobacter sp. A1]
gi|411771776|gb|EKS55436.1| DNA polymerase III subunit beta [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|422896198|gb|EKU35981.1| dna polymerase iii subunit beta [Citrobacter sp. L17]
gi|455645347|gb|EMF24407.1| DNA polymerase III subunit beta [Citrobacter freundii GTC 09479]
Length = 366
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 175/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALIQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ +NP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQPLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|114561190|ref|YP_748703.1| DNA polymerase III subunit beta [Shewanella frigidimarina NCIMB
400]
gi|114332483|gb|ABI69865.1| DNA polymerase III, beta subunit [Shewanella frigidimarina NCIMB
400]
Length = 366
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 187/300 (62%), Gaps = 4/300 (1%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
+++A+L PLQ+V VE+++ LPIL+N+LV + + TD EV++ A+ +G+
Sbjct: 6 DRDALLKPLQLVCGAVERRHNLPILANLLVEVSESSLKLTGTDLEVELVGQAAI-HGDID 64
Query: 68 IN-IIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSK 126
I V A+K +DI++SLPE ++ + ++ ++SG+S+F+L TL A++YP + +
Sbjct: 65 IGRTTVPAKKLLDIVKSLPEQSELKVEQQDNKWLLRSGRSRFSLATLPAEDYPNVE-EFQ 123
Query: 127 YDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVN 186
D EF+L Q LK I++ FS+A QD+RYYLNGLL + + A+++DGHRL
Sbjct: 124 ADIEFSLKQGVLKSIIDSTQFSMANQDVRYYLNGLLFETEGNVLRAIATDGHRLALSHRT 183
Query: 187 IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFL 246
+D +I+PRK V + RLL++ + + + I +N I+ I S+ SKL+DG+F
Sbjct: 184 LDVSLPE-KQVIVPRKGVVEMARLLDSDDQDITIAIGDNAIRAITSSAVFTSKLVDGRFP 242
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
DY+ V+ K + +RN+L ++L R SI+SN+K +GVR+ ++ LKIT ++ +E+A
Sbjct: 243 DYRRVLPKGGNKVVIASRNQLKQALTRASILSNEKFRGVRIQLETGLLKITANNPEQEEA 302
>gi|238787827|ref|ZP_04631624.1| DNA polymerase III subunit beta [Yersinia frederiksenii ATCC 33641]
gi|238724170|gb|EEQ15813.1| DNA polymerase III subunit beta [Yersinia frederiksenii ATCC 33641]
Length = 366
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 178/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ A+ ++
Sbjct: 6 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALSQPHTQ 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++T+ ++ + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDIWRGLPEGAEITVALDGDRLLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ + P+ L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQTLPSHS-VIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLKASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITANNPEQEEA 302
>gi|294627437|ref|ZP_06706021.1| DNA polymerase III subunit beta [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292598258|gb|EFF42411.1| DNA polymerase III subunit beta [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 366
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 110/295 (37%), Positives = 176/295 (59%), Gaps = 10/295 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A L PL V+++VE++ LP+L+N+LV ++S TD EV++ + T V
Sbjct: 6 QREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTLVEDAQDG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ ARK DILR+LP+ +VTI + +++G+S+FTL TL + ++P S
Sbjct: 66 -ETTIPARKLFDILRALPDGSRVTISQTGDKVTVQAGRSRFTLATLPSNDFP-----SVD 119
Query: 128 DFEFT----LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
+ E T + + LK ++ F++AQQD+RYYLNGLL + + V++DGHRL
Sbjct: 120 EVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLRCVATDGHRLALC 179
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDG 243
++ ++K + II+PRK V LQRLLE + VEL++ + I++ ++ SKLIDG
Sbjct: 180 EIELEKAGGAKRQIIVPRKGVTELQRLLEGADREVELEVGRSHIRVKRGDVTFTSKLIDG 239
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
+F DY+ VI ++ V+R L SLQR +I+SN+K +GVR+ + P LKI+
Sbjct: 240 RFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISA 294
>gi|238750288|ref|ZP_04611790.1| DNA polymerase III subunit beta [Yersinia rohdei ATCC 43380]
gi|238711521|gb|EEQ03737.1| DNA polymerase III subunit beta [Yersinia rohdei ATCC 43380]
Length = 366
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 177/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALSQPHEQ 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++T+ ++ + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDIWRGLPEGAEITVALDGDRLLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ + P+ L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQTLPSHS-VIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLKASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITANNPEQEEA 302
>gi|16767122|ref|NP_462737.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|167992431|ref|ZP_02573529.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168242057|ref|ZP_02666989.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|194444384|ref|YP_002043087.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194449346|ref|YP_002047870.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|200387477|ref|ZP_03214089.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|374979354|ref|ZP_09720692.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|378447199|ref|YP_005234831.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|378452744|ref|YP_005240104.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|378701721|ref|YP_005183679.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|378986538|ref|YP_005249694.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|378991140|ref|YP_005254304.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|379703099|ref|YP_005244827.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|383498466|ref|YP_005399155.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|386593510|ref|YP_006089910.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|417369232|ref|ZP_12140491.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Hvittingfoss str. A4-620]
gi|418807026|ref|ZP_13362594.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|418811187|ref|ZP_13366723.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|418814401|ref|ZP_13369917.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|418819375|ref|ZP_13374827.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|418825431|ref|ZP_13380725.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22462]
gi|418829268|ref|ZP_13384252.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|418834931|ref|ZP_13389832.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|418839168|ref|ZP_13394007.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|418845799|ref|ZP_13400577.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|418849541|ref|ZP_13404272.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|418854086|ref|ZP_13408768.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|418860077|ref|ZP_13414663.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|418865198|ref|ZP_13419679.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|418868091|ref|ZP_13422535.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|419729983|ref|ZP_14256937.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|419734358|ref|ZP_14261250.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|419737900|ref|ZP_14264669.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|419744048|ref|ZP_14270708.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|419749773|ref|ZP_14276249.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|421569796|ref|ZP_16015496.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|421576325|ref|ZP_16021927.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|421582327|ref|ZP_16027865.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|422028081|ref|ZP_16374400.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|422033128|ref|ZP_16379216.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|427556191|ref|ZP_18929722.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|427573582|ref|ZP_18934315.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|427595078|ref|ZP_18939228.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|427619815|ref|ZP_18944143.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|427643172|ref|ZP_18948999.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|427658100|ref|ZP_18953722.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|427663354|ref|ZP_18958622.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|427679854|ref|ZP_18963517.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|427801351|ref|ZP_18968941.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm5]
gi|3915668|sp|P26464.3|DPO3B_SALTY RecName: Full=DNA polymerase III subunit beta
gi|2653647|gb|AAB87631.1| DNA polymerase III beta clamp subunit [Salmonella enterica subsp.
enterica serovar Typhimurium]
gi|16422411|gb|AAL22696.1| DNA polymerase III, beta-subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|194403047|gb|ACF63269.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194407650|gb|ACF67869.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|199604575|gb|EDZ03120.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|205329442|gb|EDZ16206.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205338833|gb|EDZ25597.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|261248978|emb|CBG26835.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267996123|gb|ACY91008.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301160370|emb|CBW19895.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312914967|dbj|BAJ38941.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|321225555|gb|EFX50610.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|323132198|gb|ADX19628.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|332990687|gb|AEF09670.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|353584681|gb|EHC44727.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Hvittingfoss str. A4-620]
gi|380465287|gb|AFD60690.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|381295454|gb|EIC36567.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|381297830|gb|EIC38915.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|381303775|gb|EIC44793.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|381309426|gb|EIC50260.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|381310537|gb|EIC51365.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|383800551|gb|AFH47633.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|392780099|gb|EJA36756.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|392781125|gb|EJA37770.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|392794455|gb|EJA50870.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|392795006|gb|EJA51391.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|392804537|gb|EJA60695.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|392804645|gb|EJA60794.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|392812063|gb|EJA68059.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|392813252|gb|EJA69221.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|392814939|gb|EJA70884.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22462]
gi|392821143|gb|EJA76974.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|392825369|gb|EJA81116.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|392827987|gb|EJA83685.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|392828847|gb|EJA84536.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|392838548|gb|EJA94110.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|402518980|gb|EJW26346.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|402526520|gb|EJW33794.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|402533145|gb|EJW40328.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|414012622|gb|EKS96535.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|414013767|gb|EKS97640.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|414014156|gb|EKS98008.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|414027629|gb|EKT10846.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|414028564|gb|EKT11743.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|414030984|gb|EKT14063.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|414042009|gb|EKT24560.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|414042789|gb|EKT25319.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|414047141|gb|EKT29436.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|414055804|gb|EKT37671.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|414062481|gb|EKT43793.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm5]
Length = 366
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 173/299 (57%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ + +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLSQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIESTQFSMAHQDVRYYLNGMLFETEGSELRTVATDGHRLAVCSMPL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ ENP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 EASLPSHS-VIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|157373148|ref|YP_001471748.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
gi|157315522|gb|ABV34620.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
Length = 366
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 110/301 (36%), Positives = 185/301 (61%), Gaps = 2/301 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
+++A+L PLQ+V VE+++ LPIL+N+LV + + TD EV++ +
Sbjct: 6 DRDALLKPLQLVTGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGQVQLEGDVQE 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ A+KF+DI++SLP+ ++ I + + ++SG+S+FTL TL A+EYP + +
Sbjct: 66 GRTTIPAKKFLDIVKSLPDQVELKIEQQENRLLLRSGRSRFTLATLPAEEYPNVEA-FQA 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
D EFT+ Q TLK +++ FS+A QD+RYYLNGLLL + + A+++DGHRL +
Sbjct: 125 DIEFTIKQGTLKSLIDATQFSMANQDVRYYLNGLLLETEGNVLRAIATDGHRLALSHRMV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
++ +I+PRK V LQRL E ++ + + I +N I+ + SKL+DG+F D
Sbjct: 185 EESLPE-KQVIVPRKGVVELQRLFEGEDLDITIAIGDNAIRATTGSAVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKAS 307
Y+ V+ +K + +RN L ++L R SI+SN+K +GVR+ ++ N +KIT ++ +E+A
Sbjct: 244 YRRVLPKGGDKIVIASRNHLKQALLRASILSNEKFRGVRVQLENNLIKITANNPEQEEAE 303
Query: 308 S 308
Sbjct: 304 E 304
>gi|395235792|ref|ZP_10413995.1| DNA polymerase III subunit beta [Enterobacter sp. Ag1]
gi|394729546|gb|EJF29520.1| DNA polymerase III subunit beta [Enterobacter sp. Ag1]
Length = 366
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 175/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVAEGALSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + +++ V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEDLRTVATDGHRLAVCSMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + S +I+PRK V L R+L+ E P+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQPLPNHS-VIVPRKGVIELMRMLDGGETPLHVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLDAGCDLLKQAFARAAILSNEKFRGVRLFVSENQLKITANNPEQEEA 302
>gi|440285503|ref|YP_007338268.1| DNA polymerase III, beta subunit [Enterobacteriaceae bacterium
strain FGI 57]
gi|440045025|gb|AGB76083.1| DNA polymerase III, beta subunit [Enterobacteriaceae bacterium
strain FGI 57]
Length = 366
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 175/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQAHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + S +I+PRK V L R+L+ +NP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GESLPNHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLDAGCDILKQAFARAAILSNEKFRGVRLFVSENQLKITANNPEQEEA 302
>gi|378764973|ref|YP_005193432.1| DNA polymerase III beta subunit DnaN [Pantoea ananatis LMG 5342]
gi|386017826|ref|YP_005936126.1| DNA polymerase III beta subunit DnaN [Pantoea ananatis AJ13355]
gi|386077238|ref|YP_005990763.1| DNA polymerase III subunit beta [Pantoea ananatis PA13]
gi|327395908|dbj|BAK13330.1| DNA polymerase III beta subunit DnaN [Pantoea ananatis AJ13355]
gi|354986419|gb|AER30543.1| DNA polymerase III subunit beta [Pantoea ananatis PA13]
gi|365184445|emb|CCF07395.1| DNA polymerase III beta subunit DnaN [Pantoea ananatis LMG 5342]
Length = 366
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ N + TD E+++ A+ + +
Sbjct: 6 EREQLLKPLQQVSGPLGGRPTLPILGNLLMQVNEGSLLLTGTDLEMEMVARVALTQPHET 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF+DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFLDICRGLPEGAEINVTLEGERMLVRSGRSRFSLSTLPASDFPNLD-DWQN 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG++ + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMMFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ + P++++I ++ I+ + SKL+DG+F D
Sbjct: 185 GQALPSHS-VIVPRKGVIELLRLLDGGDTPLQVQIGSSNIRAHVGDYIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL I N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKALEAGCDLLKQAFARAAILSNEKFRGVRLHITENQLKITANNPEQEEA 302
>gi|21240776|ref|NP_640358.1| DNA polymerase III subunit beta [Xanthomonas axonopodis pv. citri
str. 306]
gi|78045558|ref|YP_361733.1| DNA polymerase III subunit beta [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325926218|ref|ZP_08187576.1| DNA polymerase III, beta subunit [Xanthomonas perforans 91-118]
gi|346722942|ref|YP_004849611.1| DNA polymerase III subunit beta [Xanthomonas axonopodis pv.
citrumelo F1]
gi|418516099|ref|ZP_13082275.1| DNA polymerase III subunit beta [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|418521969|ref|ZP_13088009.1| DNA polymerase III subunit beta [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|21106040|gb|AAM34894.1| DNA polymerase III beta chain [Xanthomonas axonopodis pv. citri
str. 306]
gi|78033988|emb|CAJ21633.1| DNA polymerase III beta chain [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325543400|gb|EGD14825.1| DNA polymerase III, beta subunit [Xanthomonas perforans 91-118]
gi|346647689|gb|AEO40313.1| DNA polymerase III subunit beta [Xanthomonas axonopodis pv.
citrumelo F1]
gi|410701898|gb|EKQ60413.1| DNA polymerase III subunit beta [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|410707162|gb|EKQ65616.1| DNA polymerase III subunit beta [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 366
Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 110/295 (37%), Positives = 176/295 (59%), Gaps = 10/295 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A L PL V+++VE++ LP+L+N+LV ++S TD EV++ + T V
Sbjct: 6 QREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTLVEDAQDG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ ARK DILR+LP+ +VTI + +++G+S+FTL TL + ++P S
Sbjct: 66 -ETTIPARKLFDILRALPDGSRVTISQTGDKVTVQAGRSRFTLATLPSNDFP-----SVD 119
Query: 128 DFEFT----LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
+ E T + + LK ++ F++AQQD+RYYLNGLL + + V++DGHRL
Sbjct: 120 EVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLRCVATDGHRLALC 179
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDG 243
++ ++K + II+PRK V LQRLLE + VEL++ + I++ ++ SKLIDG
Sbjct: 180 EMELEKAGGAKRQIIVPRKGVTELQRLLEGADREVELEVGRSHIRVKRGDVTFTSKLIDG 239
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
+F DY+ VI ++ V+R L SLQR +I+SN+K +GVR+ + P LKI+
Sbjct: 240 RFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISA 294
>gi|238783049|ref|ZP_04627076.1| DNA polymerase III subunit beta [Yersinia bercovieri ATCC 43970]
gi|238716050|gb|EEQ08035.1| DNA polymerase III subunit beta [Yersinia bercovieri ATCC 43970]
Length = 366
Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 177/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLRLTGTDLEMEMVACVALSQPHEQ 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++T+ ++ + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDIWRGLPEGAEITVALDGDRLLVRSGRSRFSLSTLPAVDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ + P+ L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQTLPSHS-VIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITANNPEQEEA 302
>gi|320539855|ref|ZP_08039514.1| DNA polymerase III, beta subunit [Serratia symbiotica str. Tucson]
gi|320030041|gb|EFW12061.1| DNA polymerase III, beta subunit [Serratia symbiotica str. Tucson]
Length = 366
Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ A+ + +
Sbjct: 6 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQAMEGSLLLTGTDLEMEMVARVALSQTHEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +EN+ + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVTLENERILVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + + +++DGHRL + I
Sbjct: 125 EVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTIATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
++ S S +I+PRK V L RLL++ + P++L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQQLPSHS-VIVPRKGVMELLRLLDSGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKILEAGCDLLKQAFARAAILSNEKFRGVRLYASHNQLKITANNPEQEEA 302
>gi|21229480|ref|NP_635397.1| DNA polymerase III subunit beta [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66766354|ref|YP_241116.1| DNA polymerase III subunit beta [Xanthomonas campestris pv.
campestris str. 8004]
gi|188989398|ref|YP_001901408.1| DNA polymerase III subunit beta [Xanthomonas campestris pv.
campestris str. B100]
gi|21110940|gb|AAM39321.1| DNA polymerase III beta chain [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66571686|gb|AAY47096.1| DNA polymerase III beta chain [Xanthomonas campestris pv.
campestris str. 8004]
gi|167731158|emb|CAP49330.1| DNA polymerase III beta chain [Xanthomonas campestris pv.
campestris]
Length = 366
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 111/295 (37%), Positives = 177/295 (60%), Gaps = 10/295 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A L PL V+++VE++ LP+L+N+LV N+ ++S TD EV++ + T V
Sbjct: 6 QREAFLKPLAQVVNVVERRQTLPVLANLLVQVNNGQLSLTGTDLEVEMISRTMVEDAQDG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ ARK DILR+LP+ +VT+ + +++G+S+FTL TL A ++P S
Sbjct: 66 -ETTIPARKLFDILRALPDGSRVTVSQTGDKVTVQAGRSRFTLATLPANDFP-----SVD 119
Query: 128 DFEFT----LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
+ E T + + LK ++ F++AQQD+RYYLNGLL + + V++DGHRL
Sbjct: 120 EVEATERVAVPEAGLKELMERTAFAMAQQDVRYYLNGLLFDLRDGLLRCVATDGHRLALC 179
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDG 243
+ ++K S+ II+PRK V L RLLE + VEL++ + I++ ++ SKLIDG
Sbjct: 180 ETELEKSGSAKRQIIVPRKGVTELLRLLEAADRDVELELGRSHIRVKRGDVTFTSKLIDG 239
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
+F DY+ VI ++ V+R L SLQR +I+SN+K +GVR+ + P LKI+
Sbjct: 240 RFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISA 294
>gi|359786061|ref|ZP_09289202.1| DNA polymerase III subunit beta [Halomonas sp. GFAJ-1]
gi|359296620|gb|EHK60867.1| DNA polymerase III subunit beta [Halomonas sp. GFAJ-1]
Length = 367
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 170/288 (59%), Gaps = 1/288 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ A+L PL +V +VE++ LP+LSN+L+ +++S TD EV++ T +
Sbjct: 7 REALLRPLTLVAGVVERRQTLPVLSNVLIQVEGDQVSLTGTDLEVELIGRTVASQVDQEG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
V ARK +DI +SLP+ + + +E ++SG+S+FTL TL A E+P + ++
Sbjct: 67 AATVPARKLMDICKSLPDQSDIQLAVEEGRAVLRSGRSRFTLSTLPAAEFPNIE-DADGS 125
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
E ++ + TLK ++ F++AQQD+RYYLNG+LL Q + V++DGHRL ID
Sbjct: 126 QEISVPRGTLKHLIEATSFAMAQQDVRYYLNGMLLEIQSNLLRTVATDGHRLAMCSRPID 185
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ +I+PRK + L RLL++ + PV L + + ++ + SKLIDGKF DY
Sbjct: 186 ISVNQSQKLIVPRKGILELSRLLDDSDEPVSLTLGSTHVRAHTGDFTFTSKLIDGKFPDY 245
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
+ V+ +K + R +L + L R +I+SN+K +GVRL ++ N LK+
Sbjct: 246 ERVVPRNGDKVLIAERAELRQVLSRTAILSNEKYRGVRLYLEENNLKV 293
>gi|317046240|ref|YP_004113888.1| DNA polymerase III subunit beta [Pantoea sp. At-9b]
gi|316947857|gb|ADU67332.1| DNA polymerase III, beta subunit [Pantoea sp. At-9b]
Length = 366
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 178/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ N + TD E+++ A+ +
Sbjct: 6 EREQLLKPLQQVSGPLGGRPTLPILGNLLLQVNEGTLLLTGTDLEMEMVARVALTQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF+DI R LP+ ++T+ +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFLDICRGLPDGAEITLTLEGDRMLVRSGRSRFSLSTLPASDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + S +I+PRK V L RLL+ E P++++I ++ I+ + SKL+DG+F D
Sbjct: 185 GQALPNHS-VIVPRKGVIELVRLLDGGETPLQVQIGSSNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVR+ I N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKALEAGCDLLKQAFARAAILSNEKFRGVRIYITENQLKITANNPEQEEA 302
>gi|397163367|ref|ZP_10486832.1| DNA polymerase III, beta subunit [Enterobacter radicincitans DSM
16656]
gi|396095514|gb|EJI93059.1| DNA polymerase III, beta subunit [Enterobacter radicincitans DSM
16656]
Length = 366
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVTEGALSLTGTDLEMEMVARVALVQPHEQ 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M I+SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLIRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + S +I+PRK V L R+L+ + P+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GESLPNHS-VIVPRKGVIELMRMLDGGDTPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N +KIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDSLKQAFARAAILSNEKFRGVRLYVSENQIKITANNPEQEEA 302
>gi|114045515|ref|YP_736065.1| DNA polymerase III subunit beta [Shewanella sp. MR-7]
gi|113886957|gb|ABI41008.1| DNA polymerase III, beta subunit [Shewanella sp. MR-7]
Length = 366
Score = 216 bits (550), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 180/299 (60%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
+++A+L PLQ+V VE+++ LPIL+N+LV + + TD EV++ V
Sbjct: 6 DRDALLKPLQLVCGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGQAVVHGDIEE 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V A+K +DI++SLPE ++ + ++ ++SG+S+F+L TL A+EYP + +
Sbjct: 66 GRTTVPAKKLLDIVKSLPEQSELKVEQQDNKWLLRSGRSRFSLATLPAEEYPNVEA-FQA 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q LK +++ FS+A QD+RYYLNGLLL + + A+++DGHRL I
Sbjct: 125 EIEFTLKQGVLKSLIDATQFSMANQDVRYYLNGLLLETEGNVLRAIATDGHRLALSHRTI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D + +I+PRK V + RLLE + + + I +N I+ S SKL+DG+F D
Sbjct: 185 DAQLPE-KQVIVPRKGVMEMARLLEADDLDIAIAIGDNAIRATTSTTVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + +RN ++L R SI+SN+K +GVR+ ++ LKIT ++ +E+A
Sbjct: 244 YRRVLPKGGDKIVIASRNHFKQALTRASILSNEKFRGVRIQLEAGLLKITANNPEQEEA 302
>gi|227113115|ref|ZP_03826771.1| DNA polymerase III subunit beta [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
gi|227328544|ref|ZP_03832568.1| DNA polymerase III subunit beta [Pectobacterium carotovorum subsp.
carotovorum WPP14]
gi|261819372|ref|YP_003257478.1| DNA polymerase III subunit beta [Pectobacterium wasabiae WPP163]
gi|421083335|ref|ZP_15544211.1| DNA polymerase III, beta subunit [Pectobacterium wasabiae CFBP
3304]
gi|261603385|gb|ACX85871.1| DNA polymerase III, beta subunit [Pectobacterium wasabiae WPP163]
gi|385869621|gb|AFI88141.1| DNA polymerase III, beta subunit [Pectobacterium sp. SCC3193]
gi|401701899|gb|EJS92146.1| DNA polymerase III, beta subunit [Pectobacterium wasabiae CFBP
3304]
Length = 366
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 109/306 (35%), Positives = 182/306 (59%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ +V E+ +L PLQ V S + + LPIL N+L+ +S TD E+++ A
Sbjct: 1 MKFIVERER--LLKPLQQVSSPLGGRPTLPILGNLLIQVTEGALSLTGTDLEMEMVAKVA 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + V ARK DI R LPE ++TI ++ M ++SG+S+F+L TL A ++P
Sbjct: 59 LTQPHEPGATTVPARKLFDICRGLPEGAEITIMLDGDRMLVRSGRSRFSLSTLPAADFPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + + EF+L Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL
Sbjct: 119 LD-DWQSEVEFSLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + + S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL
Sbjct: 178 AVCSMPVGQSLPSHS-VIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
+DG+F DY+ V+ +K+ + + L ++ R +I+SN+K +GVRL + N LKIT ++
Sbjct: 237 VDGRFPDYRRVLPKNPDKTLEASCDLLKQAFSRAAILSNEKFRGVRLHLIQNQLKITANN 296
Query: 301 SNREKA 306
+E+A
Sbjct: 297 PEQEEA 302
>gi|372277400|ref|ZP_09513436.1| DNA polymerase III subunit beta [Pantoea sp. SL1_M5]
gi|390436476|ref|ZP_10225014.1| DNA polymerase III beta-subunit [Pantoea agglomerans IG1]
Length = 366
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 177/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ + TD E+++ A+ +
Sbjct: 6 EREQLLKPLQQVSGPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALTQAHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ V ARKF+DI R LP+ ++T+ +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSTTVPARKFLDICRGLPDGAEITLALEGDRMLVRSGRSRFSLSTLPASDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG++ + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMMFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ + P++++I + I+ + SKL+DG+F D
Sbjct: 185 GQALPSHS-VIVPRKGVIELLRLLDGGDTPLQVQIGGSNIRAHVGDYIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL I N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKALEAGCDLLKQAFARAAILSNEKFRGVRLYITENQLKITANNPEQEEA 302
>gi|291615642|ref|YP_003518384.1| DnaN [Pantoea ananatis LMG 20103]
gi|291150672|gb|ADD75256.1| DnaN [Pantoea ananatis LMG 20103]
Length = 407
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ N + TD E+++ A+ + +
Sbjct: 47 EREQLLKPLQQVSGPLGGRPTLPILGNLLMQVNEGSLLLTGTDLEMEMVARVALTQPHET 106
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF+DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 107 GATTVPARKFLDICRGLPEGAEINVTLEGERMLVRSGRSRFSLSTLPASDFPNLD-DWQN 165
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG++ + + + V++DGHRL + I
Sbjct: 166 EVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMMFETEGEELRTVATDGHRLAVCSMPI 225
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ + P++++I ++ I+ + SKL+DG+F D
Sbjct: 226 GQALPSHS-VIVPRKGVIELLRLLDGGDTPLQVQIGSSNIRAHVGDYIFTSKLVDGRFPD 284
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL I N LKIT ++ +E+A
Sbjct: 285 YRRVLPKNPDKALEAGCDLLKQAFARAAILSNEKFRGVRLHITENQLKITANNPEQEEA 343
>gi|448239807|ref|YP_007403860.1| DNA polymerase III, beta subunit [Serratia marcescens WW4]
gi|445210171|gb|AGE15841.1| DNA polymerase III, beta subunit [Serratia marcescens WW4]
gi|453064449|gb|EMF05414.1| DNA polymerase III subunit beta [Serratia marcescens VGH107]
Length = 366
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALSQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E++ M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVTLESERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
++ S S +I+PRK V L RLL+ ++ ++L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQQLPSHS-VIVPRKGVMELVRLLDGGDSLLQLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITANNPEQEEA 302
>gi|398792981|ref|ZP_10553510.1| DNA polymerase III, beta subunit [Pantoea sp. YR343]
gi|398211770|gb|EJM98386.1| DNA polymerase III, beta subunit [Pantoea sp. YR343]
Length = 366
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 178/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ + + TD E+++ A+ +
Sbjct: 6 EREQLLKPLQQVSGPLGGRPTLPILGNLLLQVSEGSLRLTGTDLEMEMVARVALTQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF+DI R LPE ++++ +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFLDICRGLPEGAEISLTLEGDRMLVRSGRSRFSLSTLPASDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + S +I+PRK V L RLL+ E P++++I ++ I+ + SKL+DG+F D
Sbjct: 185 GQALPNHS-VIVPRKGVIELMRLLDGGETPLQVQIGSSNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVR+ I N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKALEAGCDILKQAFARAAILSNEKFRGVRIYITENQLKITANNPEQEEA 302
>gi|21326650|gb|AAL30090.1| DNA polymerase III beta chain [Xanthomonas campestris pv.
campestris]
Length = 366
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/295 (37%), Positives = 177/295 (60%), Gaps = 10/295 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A L PL V+++VE++ LP+L+N+LV N+ ++S TD EV++ + T V
Sbjct: 6 QREAFLKPLAQVVNVVERRQTLPVLANLLVQVNNGQLSLTGTDLEVEMISRTMVEDAQDG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ ARK DILR+LP+ +VT+ + +++G+S+FTL TL A ++P S
Sbjct: 66 -ETTIPARKLFDILRALPDGSRVTVSQTGDKVTVQAGRSRFTLATLPANDFP-----SVD 119
Query: 128 DFEFT----LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
+ E T + + LK ++ F++AQQD+RYYLNGLL + + V++DGHRL
Sbjct: 120 EVEATERVAVPEAGLKELMERTAFAMAQQDVRYYLNGLLFDLRDGLLRCVATDGHRLPLC 179
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDG 243
+ ++K S+ II+PRK V L RLLE + VEL++ + I++ ++ SKLIDG
Sbjct: 180 ETELEKSGSAKRQIIVPRKGVTELLRLLEAADRDVELELGRSHIRVKRGDVTFTSKLIDG 239
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
+F DY+ VI ++ V+R L SLQR +I+SN+K +GVR+ + P LKI+
Sbjct: 240 RFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISA 294
>gi|120596835|ref|YP_961409.1| DNA polymerase III subunit beta [Shewanella sp. W3-18-1]
gi|146291113|ref|YP_001181537.1| DNA polymerase III subunit beta [Shewanella putrefaciens CN-32]
gi|386311794|ref|YP_006007959.1| DNA polymerase III subunit beta [Shewanella putrefaciens 200]
gi|120556928|gb|ABM22855.1| DNA polymerase III, beta subunit [Shewanella sp. W3-18-1]
gi|145562803|gb|ABP73738.1| DNA polymerase III, beta subunit [Shewanella putrefaciens CN-32]
gi|319424419|gb|ADV52493.1| DNA polymerase III, beta subunit [Shewanella putrefaciens 200]
Length = 366
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 182/299 (60%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
+++A+L PLQ+V VE+++ LPILSN+LV + + TD EV++ V
Sbjct: 6 DRDALLKPLQLVCGAVERRHNLPILSNLLVEVSGHSLKLTGTDLEVELVGQAVVHGDIEE 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V A+K +DI++SLPE ++ + ++ ++SG+S+F+L TL A+EYP + +
Sbjct: 66 GRTTVPAKKLLDIVKSLPEQSELKVEQQDNKWLLRSGRSRFSLATLPAEEYPNVEA-FQA 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EF+L Q LK I++ FS+A QD+RYYLNGLL + + A+++DGHRL I
Sbjct: 125 EIEFSLKQGVLKSIIDSTQFSMANQDVRYYLNGLLFETEGNMLRAIATDGHRLALSHRVI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D + +I+PRK V + RLLE+ + + + I +N I+ +N SKL+DG+F D
Sbjct: 185 DAQLPE-KQVIVPRKGVMEMARLLESDDLDIAIAIGDNAIRATTANTVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + +RN L ++L R SI+SN+K +GVR+ ++ LKIT ++ +E+A
Sbjct: 244 YRRVLPKGGDKIVIASRNHLKQALTRASILSNEKFRGVRIQLENGLLKITANNPEQEEA 302
>gi|398801798|ref|ZP_10561035.1| DNA polymerase III, beta subunit [Pantoea sp. GM01]
gi|398091234|gb|EJL81683.1| DNA polymerase III, beta subunit [Pantoea sp. GM01]
Length = 366
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 178/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ + + TD E+++ A+ +
Sbjct: 6 EREQLLKPLQQVSGPLGGRPTLPILGNLLLQVSESSLRLTGTDLEMEMVARVALTQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF+DI R LPE ++++ +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFLDICRGLPEGAEISLTLEGDRMLVRSGRSRFSLSTLPASDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + S +I+PRK V L RLL+ E P++++I ++ I+ + SKL+DG+F D
Sbjct: 185 GQALPNHS-VIVPRKGVIELMRLLDGGETPLQVQIGSSNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVR+ I N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKALEAGCDILKQAFARAAILSNEKFRGVRIYITENQLKITANNPEQEEA 302
>gi|387130792|ref|YP_006293682.1| DNA polymerase III subunit beta [Methylophaga sp. JAM7]
gi|386272081|gb|AFJ02995.1| DNA polymerase III beta subunit [Methylophaga sp. JAM7]
Length = 367
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 110/306 (35%), Positives = 191/306 (62%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ V+ E ++ PLQ+V SIVE+++ LPILSNIL+ ++K++ STD E+++
Sbjct: 1 MQFTVSQEN--LVRPLQLVCSIVERRSTLPILSNILLKAQADKLTMTSTDMELEMIATLP 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
V + + V+ARK +DI+R+LP + ++ ++ +++GKS+F+L TL A ++P
Sbjct: 59 VA-ADEAGETTVSARKLLDIVRALPGSATISFKAKDNKALVQAGKSRFSLATLSADDFP- 116
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + Y + ++ Q LK +L+ F++A QD+RYYLNGLLL + AV++DGHRL
Sbjct: 117 HSEGANYSEQISMPQSALKDLLDETSFAMASQDVRYYLNGLLLERDANQLRAVATDGHRL 176
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
++ + + +I+PRK + L RLL + + V+L S+ QIK+ ++ SKL
Sbjct: 177 ALGELTTVEAADQKTSVIVPRKAILELGRLLGDTDAEVKLAFSSQQIKVELPDLHFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F +Y+ V+ +K L +R++L ++L R +I+++DK + VRL ++ N +K TV++
Sbjct: 237 IDGQFPNYERVLPLGGDKIVLADRDELKQALSRAAILASDKHRSVRLNLETNLIKATVTN 296
Query: 301 SNREKA 306
+E A
Sbjct: 297 QEQETA 302
>gi|365847364|ref|ZP_09387853.1| DNA polymerase III, beta subunit [Yokenella regensburgei ATCC
43003]
gi|364572618|gb|EHM50158.1| DNA polymerase III, beta subunit [Yokenella regensburgei ATCC
43003]
Length = 366
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 107/307 (34%), Positives = 177/307 (57%), Gaps = 3/307 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ + +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLTQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIALQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + S +I+PRK V L R+L+ ENP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GEALPNHS-VIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKAS 307
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAE 303
Query: 308 ST-DLIY 313
D+ Y
Sbjct: 304 EMLDVTY 310
>gi|157144343|ref|YP_001451662.1| DNA polymerase III subunit beta [Citrobacter koseri ATCC BAA-895]
gi|157081548|gb|ABV11226.1| hypothetical protein CKO_00047 [Citrobacter koseri ATCC BAA-895]
Length = 366
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 175/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALIQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + S +I+PRK V L R+L+ E P+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPNHS-VIVPRKGVIELMRMLDGGETPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|145597326|ref|YP_001161401.1| DNA polymerase III subunit beta [Yersinia pestis Pestoides F]
gi|145209022|gb|ABP38429.1| DNA polymerase III, beta subunit [Yersinia pestis Pestoides F]
Length = 366
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 175/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLRLTGTDLEMEMVACVALSQSHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++T+ ++ + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDIWRGLPEGAEITVALDGDRLLVRSGRSRFSLSTLPAIDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ + P+ L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQTLPSHS-VIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKMLEAGCDLLKQAFSRAAILSNEKFRGVRLYVSHNQLKITANNPEQEEA 302
>gi|113968348|ref|YP_732141.1| DNA polymerase III subunit beta [Shewanella sp. MR-4]
gi|117918469|ref|YP_867661.1| DNA polymerase III subunit beta [Shewanella sp. ANA-3]
gi|113883032|gb|ABI37084.1| DNA polymerase III, beta subunit [Shewanella sp. MR-4]
gi|117610801|gb|ABK46255.1| DNA polymerase III, beta subunit [Shewanella sp. ANA-3]
Length = 366
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 180/299 (60%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
+++A+L PLQ+V VE+++ LPIL+N+LV + + TD EV++ +
Sbjct: 6 DRDALLKPLQLVCGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGQAVIHGDIEE 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V A+K +DI++SLPE ++ + ++ ++SG+S+F+L TL A+EYP + +
Sbjct: 66 GRTTVPAKKLLDIVKSLPEQSELKVEQQDNKWLLRSGRSRFSLATLPAEEYPNVEA-FQA 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q LK +++ FS+A QD+RYYLNGLLL + + A+++DGHRL I
Sbjct: 125 EIEFTLKQGVLKSLIDATQFSMANQDVRYYLNGLLLETEGNVLRAIATDGHRLALSHRTI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D + +I+PRK V + RLLE + + + I +N I+ S SKL+DG+F D
Sbjct: 185 DAQLPE-KQVIVPRKGVMEMARLLEADDLDIAIAIGDNAIRATTSTTVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + +RN ++L R SI+SN+K +GVR+ ++ LKIT ++ +E+A
Sbjct: 244 YRRVLPKGGDKIVIASRNHFKQALTRASILSNEKFRGVRIQLEAGLLKITANNPEQEEA 302
>gi|22127980|ref|NP_671403.1| DNA polymerase III subunit beta [Yersinia pestis KIM10+]
gi|45443727|ref|NP_995266.1| DNA polymerase III subunit beta [Yersinia pestis biovar Microtus
str. 91001]
gi|51598226|ref|YP_072417.1| DNA polymerase III subunit beta [Yersinia pseudotuberculosis IP
32953]
gi|108810132|ref|YP_654048.1| DNA polymerase III subunit beta [Yersinia pestis Antiqua]
gi|108814114|ref|YP_649881.1| DNA polymerase III subunit beta [Yersinia pestis Nepal516]
gi|150260969|ref|ZP_01917697.1| DNA polymerase III, beta subunit protein [Yersinia pestis
CA88-4125]
gi|153950603|ref|YP_001403094.1| DNA polymerase III subunit beta [Yersinia pseudotuberculosis IP
31758]
gi|162419235|ref|YP_001608447.1| DNA polymerase III subunit beta [Yersinia pestis Angola]
gi|165926167|ref|ZP_02221999.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165936833|ref|ZP_02225399.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
str. IP275]
gi|166009556|ref|ZP_02230454.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166213164|ref|ZP_02239199.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167401667|ref|ZP_02307161.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167422858|ref|ZP_02314611.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167425558|ref|ZP_02317311.1| DNA polymerase III, beta subunit [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167470925|ref|ZP_02335629.1| DNA polymerase III, beta subunit [Yersinia pestis FV-1]
gi|170022264|ref|YP_001718769.1| DNA polymerase III subunit beta [Yersinia pseudotuberculosis YPIII]
gi|186893346|ref|YP_001870458.1| DNA polymerase III subunit beta [Yersinia pseudotuberculosis PB1/+]
gi|218931073|ref|YP_002348948.1| DNA polymerase III subunit beta [Yersinia pestis CO92]
gi|229839803|ref|ZP_04459962.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229841888|ref|ZP_04462044.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
str. India 195]
gi|229896765|ref|ZP_04511928.1| DNA polymerase III, beta subunit [Yersinia pestis Pestoides A]
gi|229904653|ref|ZP_04519764.1| DNA polymerase III, beta subunit [Yersinia pestis Nepal516]
gi|270488364|ref|ZP_06205438.1| DNA polymerase III, beta subunit [Yersinia pestis KIM D27]
gi|294505624|ref|YP_003569686.1| DNA polymerase III subunit beta [Yersinia pestis Z176003]
gi|384124192|ref|YP_005506812.1| DNA polymerase III subunit beta [Yersinia pestis D106004]
gi|384128061|ref|YP_005510675.1| DNA polymerase III subunit beta [Yersinia pestis D182038]
gi|384138054|ref|YP_005520756.1| DNA polymerase III subunit beta [Yersinia pestis A1122]
gi|384416922|ref|YP_005626284.1| DNA polymerase III subunit beta [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420549351|ref|ZP_15047072.1| DNA polymerase III, beta subunit [Yersinia pestis PY-01]
gi|420554694|ref|ZP_15051836.1| DNA polymerase III, beta subunit [Yersinia pestis PY-02]
gi|420560330|ref|ZP_15056719.1| DNA polymerase III, beta subunit [Yersinia pestis PY-03]
gi|420565695|ref|ZP_15061556.1| DNA polymerase III, beta subunit [Yersinia pestis PY-04]
gi|420570716|ref|ZP_15066124.1| DNA polymerase III, beta subunit [Yersinia pestis PY-05]
gi|420576400|ref|ZP_15071255.1| DNA polymerase III, beta subunit [Yersinia pestis PY-06]
gi|420581708|ref|ZP_15076092.1| DNA polymerase III, beta subunit [Yersinia pestis PY-07]
gi|420587097|ref|ZP_15080965.1| DNA polymerase III, beta subunit [Yersinia pestis PY-08]
gi|420592181|ref|ZP_15085534.1| DNA polymerase III, beta subunit [Yersinia pestis PY-09]
gi|420597561|ref|ZP_15090372.1| DNA polymerase III, beta subunit [Yersinia pestis PY-10]
gi|420603269|ref|ZP_15095436.1| DNA polymerase III, beta subunit [Yersinia pestis PY-11]
gi|420608646|ref|ZP_15100320.1| DNA polymerase III, beta subunit [Yersinia pestis PY-12]
gi|420614087|ref|ZP_15105196.1| DNA polymerase III, beta subunit [Yersinia pestis PY-13]
gi|420619401|ref|ZP_15109812.1| DNA polymerase III, beta subunit [Yersinia pestis PY-14]
gi|420624712|ref|ZP_15114614.1| DNA polymerase III, beta subunit [Yersinia pestis PY-15]
gi|420629676|ref|ZP_15119119.1| DNA polymerase III, beta subunit [Yersinia pestis PY-16]
gi|420634846|ref|ZP_15123749.1| DNA polymerase III, beta subunit [Yersinia pestis PY-19]
gi|420640123|ref|ZP_15128502.1| DNA polymerase III, beta subunit [Yersinia pestis PY-25]
gi|420645567|ref|ZP_15133489.1| DNA polymerase III, beta subunit [Yersinia pestis PY-29]
gi|420650896|ref|ZP_15138279.1| DNA polymerase III, beta subunit [Yersinia pestis PY-32]
gi|420656557|ref|ZP_15143386.1| DNA polymerase III, beta subunit [Yersinia pestis PY-34]
gi|420661959|ref|ZP_15148196.1| DNA polymerase III, beta subunit [Yersinia pestis PY-36]
gi|420667304|ref|ZP_15153017.1| DNA polymerase III, beta subunit [Yersinia pestis PY-42]
gi|420672173|ref|ZP_15157455.1| DNA polymerase III, beta subunit [Yersinia pestis PY-45]
gi|420677495|ref|ZP_15162303.1| DNA polymerase III, beta subunit [Yersinia pestis PY-46]
gi|420683082|ref|ZP_15167330.1| DNA polymerase III, beta subunit [Yersinia pestis PY-47]
gi|420688457|ref|ZP_15172117.1| DNA polymerase III, beta subunit [Yersinia pestis PY-48]
gi|420693773|ref|ZP_15176763.1| DNA polymerase III, beta subunit [Yersinia pestis PY-52]
gi|420699484|ref|ZP_15181795.1| DNA polymerase III, beta subunit [Yersinia pestis PY-53]
gi|420705417|ref|ZP_15186441.1| DNA polymerase III, beta subunit [Yersinia pestis PY-54]
gi|420710641|ref|ZP_15191178.1| DNA polymerase III, beta subunit [Yersinia pestis PY-55]
gi|420716145|ref|ZP_15196051.1| DNA polymerase III, beta subunit [Yersinia pestis PY-56]
gi|420721692|ref|ZP_15200781.1| DNA polymerase III, beta subunit [Yersinia pestis PY-58]
gi|420727118|ref|ZP_15205590.1| DNA polymerase III, beta subunit [Yersinia pestis PY-59]
gi|420732614|ref|ZP_15210535.1| DNA polymerase III, beta subunit [Yersinia pestis PY-60]
gi|420737604|ref|ZP_15215040.1| DNA polymerase III, beta subunit [Yersinia pestis PY-61]
gi|420743092|ref|ZP_15219977.1| DNA polymerase III, beta subunit [Yersinia pestis PY-63]
gi|420748803|ref|ZP_15224746.1| DNA polymerase III, beta subunit [Yersinia pestis PY-64]
gi|420754232|ref|ZP_15229644.1| DNA polymerase III, beta subunit [Yersinia pestis PY-65]
gi|420760299|ref|ZP_15234443.1| DNA polymerase III, beta subunit [Yersinia pestis PY-66]
gi|420765411|ref|ZP_15239046.1| DNA polymerase III, beta subunit [Yersinia pestis PY-71]
gi|420770625|ref|ZP_15243710.1| DNA polymerase III, beta subunit [Yersinia pestis PY-72]
gi|420775594|ref|ZP_15248221.1| DNA polymerase III, beta subunit [Yersinia pestis PY-76]
gi|420781241|ref|ZP_15253168.1| DNA polymerase III, beta subunit [Yersinia pestis PY-88]
gi|420786854|ref|ZP_15258078.1| DNA polymerase III, beta subunit [Yersinia pestis PY-89]
gi|420791865|ref|ZP_15262597.1| DNA polymerase III, beta subunit [Yersinia pestis PY-90]
gi|420797439|ref|ZP_15267604.1| DNA polymerase III, beta subunit [Yersinia pestis PY-91]
gi|420802538|ref|ZP_15272189.1| DNA polymerase III, beta subunit [Yersinia pestis PY-92]
gi|420807868|ref|ZP_15277026.1| DNA polymerase III, beta subunit [Yersinia pestis PY-93]
gi|420813301|ref|ZP_15281876.1| DNA polymerase III, beta subunit [Yersinia pestis PY-94]
gi|420818734|ref|ZP_15286821.1| DNA polymerase III, beta subunit [Yersinia pestis PY-95]
gi|420824103|ref|ZP_15291608.1| DNA polymerase III, beta subunit [Yersinia pestis PY-96]
gi|420829156|ref|ZP_15296171.1| DNA polymerase III, beta subunit [Yersinia pestis PY-98]
gi|420834753|ref|ZP_15301218.1| DNA polymerase III, beta subunit [Yersinia pestis PY-99]
gi|420839679|ref|ZP_15305676.1| DNA polymerase III, beta subunit [Yersinia pestis PY-100]
gi|420844895|ref|ZP_15310404.1| DNA polymerase III, beta subunit [Yersinia pestis PY-101]
gi|420850545|ref|ZP_15315478.1| DNA polymerase III, beta subunit [Yersinia pestis PY-102]
gi|420856301|ref|ZP_15320306.1| DNA polymerase III, beta subunit [Yersinia pestis PY-103]
gi|420861365|ref|ZP_15324797.1| DNA polymerase III, beta subunit [Yersinia pestis PY-113]
gi|421765616|ref|ZP_16202399.1| DNA polymerase III subunit beta [Yersinia pestis INS]
gi|21961125|gb|AAM87654.1|AE014012_11 DNA polymerase III, beta-subunit [Yersinia pestis KIM10+]
gi|45438597|gb|AAS64143.1| DNA polymerase III, beta subunit protein [Yersinia pestis biovar
Microtus str. 91001]
gi|51591508|emb|CAH23180.1| DNA polymerase III, beta subunit protein [Yersinia
pseudotuberculosis IP 32953]
gi|108777762|gb|ABG20281.1| DNA polymerase III, beta subunit [Yersinia pestis Nepal516]
gi|108782045|gb|ABG16103.1| DNA polymerase III, beta subunit [Yersinia pestis Antiqua]
gi|115349684|emb|CAL22665.1| DNA polymerase III, beta subunit protein [Yersinia pestis CO92]
gi|149290377|gb|EDM40454.1| DNA polymerase III, beta subunit protein [Yersinia pestis
CA88-4125]
gi|152962098|gb|ABS49559.1| DNA polymerase III, beta subunit [Yersinia pseudotuberculosis IP
31758]
gi|162352050|gb|ABX85998.1| DNA polymerase III, beta subunit [Yersinia pestis Angola]
gi|165915075|gb|EDR33686.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
str. IP275]
gi|165922027|gb|EDR39204.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165991478|gb|EDR43779.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166205462|gb|EDR49942.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166958250|gb|EDR55271.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167049049|gb|EDR60457.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167055572|gb|EDR65365.1| DNA polymerase III, beta subunit [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169748798|gb|ACA66316.1| DNA polymerase III, beta subunit [Yersinia pseudotuberculosis
YPIII]
gi|186696372|gb|ACC87001.1| DNA polymerase III, beta subunit [Yersinia pseudotuberculosis
PB1/+]
gi|229678771|gb|EEO74876.1| DNA polymerase III, beta subunit [Yersinia pestis Nepal516]
gi|229691227|gb|EEO83280.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
str. India 195]
gi|229696169|gb|EEO86216.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229700203|gb|EEO88239.1| DNA polymerase III, beta subunit [Yersinia pestis Pestoides A]
gi|262363788|gb|ACY60509.1| DNA polymerase III subunit beta [Yersinia pestis D106004]
gi|262367725|gb|ACY64282.1| DNA polymerase III subunit beta [Yersinia pestis D182038]
gi|270336868|gb|EFA47645.1| DNA polymerase III, beta subunit [Yersinia pestis KIM D27]
gi|294356083|gb|ADE66424.1| DNA polymerase III subunit beta [Yersinia pestis Z176003]
gi|320017426|gb|ADW00998.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|342853183|gb|AEL71736.1| DNA polymerase III subunit beta [Yersinia pestis A1122]
gi|391420276|gb|EIQ83082.1| DNA polymerase III, beta subunit [Yersinia pestis PY-03]
gi|391420328|gb|EIQ83133.1| DNA polymerase III, beta subunit [Yersinia pestis PY-02]
gi|391420356|gb|EIQ83160.1| DNA polymerase III, beta subunit [Yersinia pestis PY-01]
gi|391435292|gb|EIQ96361.1| DNA polymerase III, beta subunit [Yersinia pestis PY-04]
gi|391436680|gb|EIQ97610.1| DNA polymerase III, beta subunit [Yersinia pestis PY-05]
gi|391440023|gb|EIR00627.1| DNA polymerase III, beta subunit [Yersinia pestis PY-06]
gi|391452465|gb|EIR11868.1| DNA polymerase III, beta subunit [Yersinia pestis PY-07]
gi|391452495|gb|EIR11896.1| DNA polymerase III, beta subunit [Yersinia pestis PY-08]
gi|391454140|gb|EIR13378.1| DNA polymerase III, beta subunit [Yersinia pestis PY-09]
gi|391468019|gb|EIR25930.1| DNA polymerase III, beta subunit [Yersinia pestis PY-10]
gi|391468886|gb|EIR26722.1| DNA polymerase III, beta subunit [Yersinia pestis PY-11]
gi|391470303|gb|EIR27982.1| DNA polymerase III, beta subunit [Yersinia pestis PY-12]
gi|391484281|gb|EIR40566.1| DNA polymerase III, beta subunit [Yersinia pestis PY-13]
gi|391485480|gb|EIR41616.1| DNA polymerase III, beta subunit [Yersinia pestis PY-14]
gi|391485650|gb|EIR41767.1| DNA polymerase III, beta subunit [Yersinia pestis PY-15]
gi|391500177|gb|EIR54702.1| DNA polymerase III, beta subunit [Yersinia pestis PY-16]
gi|391500425|gb|EIR54926.1| DNA polymerase III, beta subunit [Yersinia pestis PY-19]
gi|391505213|gb|EIR59244.1| DNA polymerase III, beta subunit [Yersinia pestis PY-25]
gi|391516676|gb|EIR69546.1| DNA polymerase III, beta subunit [Yersinia pestis PY-29]
gi|391517313|gb|EIR70133.1| DNA polymerase III, beta subunit [Yersinia pestis PY-34]
gi|391517764|gb|EIR70533.1| DNA polymerase III, beta subunit [Yersinia pestis PY-32]
gi|391530417|gb|EIR81995.1| DNA polymerase III, beta subunit [Yersinia pestis PY-36]
gi|391533516|gb|EIR84780.1| DNA polymerase III, beta subunit [Yersinia pestis PY-42]
gi|391535668|gb|EIR86724.1| DNA polymerase III, beta subunit [Yersinia pestis PY-45]
gi|391549043|gb|EIR98780.1| DNA polymerase III, beta subunit [Yersinia pestis PY-47]
gi|391549094|gb|EIR98827.1| DNA polymerase III, beta subunit [Yersinia pestis PY-46]
gi|391549509|gb|EIR99207.1| DNA polymerase III, beta subunit [Yersinia pestis PY-48]
gi|391563601|gb|EIS11898.1| DNA polymerase III, beta subunit [Yersinia pestis PY-52]
gi|391565086|gb|EIS13234.1| DNA polymerase III, beta subunit [Yersinia pestis PY-53]
gi|391567882|gb|EIS15689.1| DNA polymerase III, beta subunit [Yersinia pestis PY-54]
gi|391578997|gb|EIS25179.1| DNA polymerase III, beta subunit [Yersinia pestis PY-55]
gi|391580248|gb|EIS26267.1| DNA polymerase III, beta subunit [Yersinia pestis PY-56]
gi|391590769|gb|EIS35441.1| DNA polymerase III, beta subunit [Yersinia pestis PY-58]
gi|391594334|gb|EIS38496.1| DNA polymerase III, beta subunit [Yersinia pestis PY-60]
gi|391594963|gb|EIS39058.1| DNA polymerase III, beta subunit [Yersinia pestis PY-59]
gi|391608916|gb|EIS51362.1| DNA polymerase III, beta subunit [Yersinia pestis PY-61]
gi|391609293|gb|EIS51702.1| DNA polymerase III, beta subunit [Yersinia pestis PY-63]
gi|391610741|gb|EIS52989.1| DNA polymerase III, beta subunit [Yersinia pestis PY-64]
gi|391622362|gb|EIS63294.1| DNA polymerase III, beta subunit [Yersinia pestis PY-65]
gi|391624300|gb|EIS64957.1| DNA polymerase III, beta subunit [Yersinia pestis PY-66]
gi|391632677|gb|EIS72175.1| DNA polymerase III, beta subunit [Yersinia pestis PY-71]
gi|391634215|gb|EIS73515.1| DNA polymerase III, beta subunit [Yersinia pestis PY-72]
gi|391644641|gb|EIS82613.1| DNA polymerase III, beta subunit [Yersinia pestis PY-76]
gi|391647495|gb|EIS85118.1| DNA polymerase III, beta subunit [Yersinia pestis PY-88]
gi|391651784|gb|EIS88915.1| DNA polymerase III, beta subunit [Yersinia pestis PY-89]
gi|391657653|gb|EIS94142.1| DNA polymerase III, beta subunit [Yersinia pestis PY-90]
gi|391665127|gb|EIT00744.1| DNA polymerase III, beta subunit [Yersinia pestis PY-91]
gi|391674419|gb|EIT09026.1| DNA polymerase III, beta subunit [Yersinia pestis PY-93]
gi|391674658|gb|EIT09246.1| DNA polymerase III, beta subunit [Yersinia pestis PY-94]
gi|391674779|gb|EIT09360.1| DNA polymerase III, beta subunit [Yersinia pestis PY-92]
gi|391688649|gb|EIT21847.1| DNA polymerase III, beta subunit [Yersinia pestis PY-95]
gi|391690461|gb|EIT23486.1| DNA polymerase III, beta subunit [Yersinia pestis PY-96]
gi|391692236|gb|EIT25095.1| DNA polymerase III, beta subunit [Yersinia pestis PY-98]
gi|391705793|gb|EIT37299.1| DNA polymerase III, beta subunit [Yersinia pestis PY-99]
gi|391706480|gb|EIT37909.1| DNA polymerase III, beta subunit [Yersinia pestis PY-100]
gi|391707018|gb|EIT38407.1| DNA polymerase III, beta subunit [Yersinia pestis PY-101]
gi|391721596|gb|EIT51500.1| DNA polymerase III, beta subunit [Yersinia pestis PY-102]
gi|391721711|gb|EIT51607.1| DNA polymerase III, beta subunit [Yersinia pestis PY-103]
gi|391722586|gb|EIT52371.1| DNA polymerase III, beta subunit [Yersinia pestis PY-113]
gi|411172936|gb|EKS42985.1| DNA polymerase III subunit beta [Yersinia pestis INS]
Length = 366
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 175/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLRLTGTDLEMEMVACVALSQSHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++T+ ++ + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDIWRGLPEGAEITVALDGDRLLVRSGRSRFSLSTLPAIDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ + P+ L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQTLPSHS-VIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKMLEAGCDLLKQAFSRAAILSNEKFRGVRLYVSHNQLKITANNPEQEEA 302
>gi|213622043|ref|ZP_03374826.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 300
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 171/297 (57%), Gaps = 2/297 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ + +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLSQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELRTVATDGHRLAVCSMPL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ ENP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 EASLPSHS-VIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNRE 304
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E
Sbjct: 244 YRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300
>gi|220933195|ref|YP_002512094.1| DNA polymerase III subunit beta [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219994505|gb|ACL71107.1| DNA polymerase III, beta subunit [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 366
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 169/289 (58%), Gaps = 2/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ +L PLQ VI VE++ +PIL+N+L+ + +++S TD EV++ A S
Sbjct: 6 QREDLLKPLQQVIGAVERRQTMPILANVLIKADEDRLSVTGTDLEVELVA-EASEVSASP 64
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARK +DI R+LP+ + I E + I SG+++FTL L A ++P + S
Sbjct: 65 GEATVPARKLLDICRALPDEASLEIQAEGDRVLITSGRARFTLSALPAADFPALDEISSS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
E TL+++ L+ ++ F++A QD+RYYLNGL+L + I V++DGHRL ++N
Sbjct: 125 K-ELTLTERELRHLILRTSFAMANQDVRYYLNGLMLEVGQNVIRTVATDGHRLALCELNT 183
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+S +IIPRK V L RLLE+ + PV L+I N I+ + SKLIDG+F D
Sbjct: 184 TVDTASSQQVIIPRKGVQELLRLLEDSDEPVRLQIGANHIRATLPRLRFTSKLIDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y VI ++ V R L ++L R SI+SN+K +G+RLV+ L+I
Sbjct: 244 YDRVIPKDGDQVMKVEREALRKALARASILSNEKYRGIRLVLGDGLLRI 292
>gi|417714761|ref|ZP_12363711.1| DNA polymerase III, beta subunit [Shigella flexneri K-272]
gi|417719659|ref|ZP_12368539.1| DNA polymerase III, beta subunit [Shigella flexneri K-227]
gi|332997867|gb|EGK17475.1| DNA polymerase III, beta subunit [Shigella flexneri K-272]
gi|333013662|gb|EGK33027.1| DNA polymerase III, beta subunit [Shigella flexneri K-227]
Length = 366
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ + +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVHPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ +N + ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRMLDGGDNLLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|442768420|gb|AGC70161.1| DNA polymerase III beta chain, partial [Xenorhabdus sp. SF80]
gi|442768422|gb|AGC70162.1| DNA polymerase III beta chain, partial [Xenorhabdus sp. SF106-C]
gi|442768424|gb|AGC70163.1| DNA polymerase III beta chain, partial [Xenorhabdus sp. SF362]
Length = 364
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ + +
Sbjct: 5 EREQLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMKARVTLTQPHEQ 64
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + +
Sbjct: 65 GATTVPARKFFDIWRGLPDGAEISVELDGDRILVRSGRSRFSLSTLPASDFPNLD-DWQS 123
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EF+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL +NI
Sbjct: 124 EVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMNI 183
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ +NP++L+I +N I+ + SKL+DG+F D
Sbjct: 184 GQNLPSHS-VIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPD 242
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 243 YRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEA 301
>gi|378581717|ref|ZP_09830361.1| DNA polymerase III, beta subunit [Pantoea stewartii subsp.
stewartii DC283]
gi|377815631|gb|EHT98742.1| DNA polymerase III, beta subunit [Pantoea stewartii subsp.
stewartii DC283]
Length = 366
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 177/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ N + TD E+++ A+ +
Sbjct: 6 EREQLLKPLQQVSGPLGGRPTLPILGNLLMQVNDGSLLLTGTDLEMEMVARVALTQAHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF+DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFLDICRGLPEGAEINVTLEGERMLVRSGRSRFSLSTLPASDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG++ + + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMMFETEGEELRTVATDGHRLAVCSMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ + P++++I ++ I+ + SKL+DG+F D
Sbjct: 185 GQALPSHS-VIVPRKGVIELLRLLDGGDTPLQVQIGSSNIRAHVGDYIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL I N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKVLEAGCDLLKQAFARAAILSNEKFRGVRLHITENQLKITANNPEQEEA 302
>gi|329297782|ref|ZP_08255118.1| DNA polymerase III subunit beta [Plautia stali symbiont]
Length = 366
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 178/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ N + TD E+++ A+ +
Sbjct: 6 EREQLLKPLQQVSGPLGGRPTLPILGNLLLQVNEGTLLLTGTDLEMEMVARVALTQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF+DI R LPE ++++ +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFLDICRGLPEGAEISLTLEGDRMLVRSGRSRFSLSTLPASDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + S +I+PRK V L RLL+ E P++++I ++ I+ + SKL+DG+F D
Sbjct: 185 GQALPNHS-VIVPRKGVIELVRLLDGGETPLQVQIGSSNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVR+ I N L+IT ++ +E+A
Sbjct: 244 YRRVLPKNPDKALEAGCDLLKQAFARAAILSNEKFRGVRIYITENQLRITANNPEQEEA 302
>gi|354595499|ref|ZP_09013516.1| DNA polymerase III, beta subunit [Brenneria sp. EniD312]
gi|353673434|gb|EHD19467.1| DNA polymerase III, beta subunit [Brenneria sp. EniD312]
Length = 367
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 178/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ ++ TD E+++ A+ +
Sbjct: 7 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGELLLTGTDLEMEMVARVALTQPHEP 66
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARK DI R LP+ ++TI ++ M ++SG+S+F+L TL A ++P + + +
Sbjct: 67 GATTVPARKLFDICRGLPDGAEITIMLDGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 125
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
D EF+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + +
Sbjct: 126 DVEFSLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCAMPV 185
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F D
Sbjct: 186 GQALPSHS-VIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 245 YRRVLPKNPDKTLEASCDLLKQAFSRAAILSNEKFRGVRLHLIQNQLKITANNPEQEEA 303
>gi|335041646|ref|ZP_08534673.1| DNA polymerase sliding clamp subunit [Methylophaga
aminisulfidivorans MP]
gi|333788260|gb|EGL54142.1| DNA polymerase sliding clamp subunit [Methylophaga
aminisulfidivorans MP]
Length = 367
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/306 (36%), Positives = 186/306 (60%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ V+ ++ ++ PLQ+V SIVE++ LPILSN+L+ +++S STD E+++
Sbjct: 1 MQFTVS--QDTLVRPLQLVCSIVERRATLPILSNVLLRVQGDQLSMTSTDMELEMIATLP 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
V V+ARK +DI+R+LP +++ + +K+GKS+F+L TL + ++P
Sbjct: 59 VAVEEEG-KTTVSARKLLDIVRALPGNATISVNAADGKAVVKAGKSRFSLATLSSDDFPD 117
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + Y E +L Q LK +L+ F++A QD+RYYLNGLLL + AV++DGHRL
Sbjct: 118 -SEGANYIDEISLPQSALKSLLDETSFAMASQDVRYYLNGLLLERDDTTLRAVATDGHRL 176
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ S + +I+PRK + L RLL + ++ V++ SN QIK+ +I SKL
Sbjct: 177 ALGSLTTAIPVSEKNSVIVPRKAIIELGRLLNDSDDIVKMAFSNQQIKVELPDIHFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F +Y+ V+ +K L +R++L ++L R +I+SNDK + VR+ + + LK TV++
Sbjct: 237 IDGQFPNYERVLPLGGDKEVLADRDELKQALSRAAILSNDKHRSVRINLDTDQLKATVTN 296
Query: 301 SNREKA 306
+E A
Sbjct: 297 QEQESA 302
>gi|384425693|ref|YP_005635050.1| DNA polymerase III subunit beta [Xanthomonas campestris pv. raphani
756C]
gi|341934793|gb|AEL04932.1| DNA polymerase III, beta subunit [Xanthomonas campestris pv.
raphani 756C]
Length = 366
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 111/295 (37%), Positives = 176/295 (59%), Gaps = 10/295 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A L PL V+++VE++ LP+L+N+LV N+ ++S TD EV++ + T V
Sbjct: 6 QREAFLKPLAQVVNVVERRQTLPVLANLLVQVNNGQLSLTGTDLEVEMISRTMVEDAQDG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ ARK DILR+LP+ +VT+ + +++G+S+FTL TL A ++P S
Sbjct: 66 -ETTIPARKLFDILRALPDGSRVTVSQTGDKVTVQAGRSRFTLATLPANDFP-----SVD 119
Query: 128 DFEFT----LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
+ E T + + LK ++ F++AQQD+RYYLNGLL + + V++DGHRL
Sbjct: 120 EVEATERVAVPEAGLKELMERTAFAMAQQDVRYYLNGLLFDLRDGLLRCVATDGHRLALC 179
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDG 243
+ ++K S+ II+PRK V L RLLE + VEL++ + I++ ++ SKLIDG
Sbjct: 180 ETELEKSGSAKRQIIVPRKGVTELLRLLEAADRDVELELGRSHIRVKRGDVTFTSKLIDG 239
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
+F DY+ VI + V+R L SLQR +I+SN+K +GVR+ + P LKI+
Sbjct: 240 RFPDYEAVIPIGADSEVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISA 294
>gi|377577806|ref|ZP_09806787.1| DNA polymerase III subunit beta [Escherichia hermannii NBRC 105704]
gi|377541044|dbj|GAB51952.1| DNA polymerase III subunit beta [Escherichia hermannii NBRC 105704]
Length = 366
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 177/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ + +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVTDGTLSLTGTDLEMEMIARVALSLPHQA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVTLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCAMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + S +I+PRK V L R+L+ ++P+ ++I +N I+ ++ SKL+DG+F D
Sbjct: 185 GQPLPNHS-VIVPRKGVLELMRMLDGGDSPLRIQIGSNNIRAHVNDYIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLDAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|242237462|ref|YP_002985643.1| DNA polymerase III subunit beta [Dickeya dadantii Ech703]
gi|242129519|gb|ACS83821.1| DNA polymerase III, beta subunit [Dickeya dadantii Ech703]
Length = 366
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + ++S TD E+++ + + +
Sbjct: 6 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQVSEGRLSLTGTDLEMEMVAHVTLTQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARK DI R LP+ ++T+ +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKLFDICRGLPDGAEITVTLEGDRMLVRSGRSRFSLSTLPASDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ F L Q TLK ++ FS+A QD+RYYLNG+L + V++DGHRL + +
Sbjct: 125 EVAFELPQATLKRLIEATQFSMAHQDVRYYLNGMLFETSGDGLRTVATDGHRLAVCSMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ E P++L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQPLPSHS-VIVPRKGVMELVRLLDGGETPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + + L ++ R +I+SN+K +GVRL + N L+IT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEASCDLLRQAFARAAILSNEKFRGVRLYLNQNQLRITANNPEQEEA 302
>gi|285016823|ref|YP_003374534.1| DNA polymerase III subunit beta [Xanthomonas albilineans GPE PC73]
gi|283472041|emb|CBA14548.1| probable dna polymerase III subunit beta protein [Xanthomonas
albilineans GPE PC73]
Length = 366
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 107/295 (36%), Positives = 177/295 (60%), Gaps = 10/295 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A L PL V+++VE++ LP+L+N LV + ++S TD EV++ + AV
Sbjct: 6 QREAFLKPLAQVVNVVERRQTLPVLANFLVQVHGGQLSLTGTDLEVEMVSRIAVDDAQDG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ ARK +I+R+LP+ KVT+ + N + +++G+S+FTL TL A ++P S
Sbjct: 66 -ETTIPARKLFEIVRALPDGSKVTVSLSNDKITVQTGRSRFTLATLPANDFP-----SVD 119
Query: 128 DFEFT----LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
+ E T + + LK ++ F++AQQD+RYYLNGLL K + V++DGHRL
Sbjct: 120 EVETTERVVVQEAALKELIERTAFAMAQQDVRYYLNGLLFDLHDKTLRCVATDGHRLALC 179
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDG 243
+ ++ + II+PRK V LQRLLE + VEL++ + +++ +++ SKLIDG
Sbjct: 180 ETELENAGGAKRQIIVPRKGVTELQRLLEGGDREVELEVGRSHVRVKRNDVTFTSKLIDG 239
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
+F DY+ VI ++ ++R L +LQR +I+SN+K +GVR+ + P LKI+
Sbjct: 240 RFPDYETVIPIGADREVKLDREILRAALQRAAILSNEKYRGVRVEVSPGQLKISA 294
>gi|403060643|ref|YP_006648860.1| hypothetical protein PCC21_042040 [Pectobacterium carotovorum
subsp. carotovorum PCC21]
gi|402807969|gb|AFR05607.1| hypothetical protein PCC21_042040 [Pectobacterium carotovorum
subsp. carotovorum PCC21]
Length = 366
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/306 (35%), Positives = 182/306 (59%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ +V E+ +L PLQ V S + + LPIL N+L+ +S TD E+++ A
Sbjct: 1 MKFIVERER--LLKPLQQVSSPLGGRPTLPILGNLLIQVTEGALSLTGTDLEMEMVAKVA 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + V ARK DI R LPE ++TI ++ M ++SG+S+F+L TL A ++P
Sbjct: 59 LTQPHELGATTVPARKLFDICRGLPEGAEITIMLDGDRMLVRSGRSRFSLSTLPAADFPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + + EF+L Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL
Sbjct: 119 LD-DWQSEVEFSLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + + S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL
Sbjct: 178 AVCSMPVGQSLPSHS-VIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
+DG+F DY+ V+ +K+ + + L ++ R +I+SN+K +GVRL + N LKIT ++
Sbjct: 237 VDGRFPDYRRVLPKNPDKTLEASCDLLKQAFSRAAILSNEKFRGVRLHLIQNQLKITANN 296
Query: 301 SNREKA 306
+E+A
Sbjct: 297 PEQEEA 302
>gi|323462780|pdb|2XUR|A Chain A, The G157c Mutation In The Escherichia Coli Sliding Clamp
Specifically Affects Initiation Of Replication
gi|323462781|pdb|2XUR|B Chain B, The G157c Mutation In The Escherichia Coli Sliding Clamp
Specifically Affects Initiation Of Replication
Length = 373
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 175/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 13 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEP 72
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 73 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 131
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLN +L + + + V++DGHRL + I
Sbjct: 132 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNCMLFETEGEELRTVATDGHRLAVCSMPI 191
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ +NP+ ++I +N I+ + SKL+DG+F D
Sbjct: 192 GQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 250
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 251 YRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 309
>gi|304398067|ref|ZP_07379942.1| DNA polymerase III, beta subunit [Pantoea sp. aB]
gi|440757778|ref|ZP_20936959.1| DNA polymerase III beta subunit [Pantoea agglomerans 299R]
gi|304354353|gb|EFM18725.1| DNA polymerase III, beta subunit [Pantoea sp. aB]
gi|436428542|gb|ELP26198.1| DNA polymerase III beta subunit [Pantoea agglomerans 299R]
Length = 366
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ + TD E+++ A+ +
Sbjct: 6 EREQLLKPLQQVSGPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALTQAHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ V ARKF+DI R LP+ ++T+ +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSTTVPARKFLDICRGLPDGAEITLALEGDRMLVRSGRSRFSLSTLPASDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG++ + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMMFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ + P++++I + I+ + SKL+DG+F D
Sbjct: 185 GQALPSHS-VIVPRKGVIELLRLLDGGDTPLQVRIGGSNIRAHVGDYIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL I N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKVLEAGCDLLKQAFARAAILSNEKFRGVRLYITENQLKITANNPEQEEA 302
>gi|311277334|ref|YP_003939565.1| DNA polymerase III subunit beta [Enterobacter cloacae SCF1]
gi|308746529|gb|ADO46281.1| DNA polymerase III, beta subunit [Enterobacter cloacae SCF1]
Length = 366
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 177/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +++
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALTQPHNA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFT++Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTVAQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCAMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + S +I+PRK V L R+L+ + P+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GETLPNHS-VIVPRKGVIELMRMLDGGDTPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLDAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|417386845|ref|ZP_12151434.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Johannesburg str. S5-703]
gi|353602129|gb|EHC57575.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
enterica serovar Johannesburg str. S5-703]
Length = 366
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 172/299 (57%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ + +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLSQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELRTVATDGHRLAVCSMPL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ NP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 EASLPSHS-VIVPRKGVIELMRMLDGGGNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|126172259|ref|YP_001048408.1| DNA polymerase III subunit beta [Shewanella baltica OS155]
gi|152998557|ref|YP_001364238.1| DNA polymerase III subunit beta [Shewanella baltica OS185]
gi|160873128|ref|YP_001552444.1| DNA polymerase III subunit beta [Shewanella baltica OS195]
gi|217971218|ref|YP_002355969.1| DNA polymerase III subunit beta [Shewanella baltica OS223]
gi|373951685|ref|ZP_09611646.1| DNA polymerase III, beta subunit [Shewanella baltica OS183]
gi|378706364|ref|YP_005271258.1| DNA polymerase III subunit beta [Shewanella baltica OS678]
gi|386322497|ref|YP_006018614.1| DNA polymerase III subunit beta [Shewanella baltica BA175]
gi|386338939|ref|YP_006035305.1| DNA polymerase III subunit beta [Shewanella baltica OS117]
gi|125995464|gb|ABN59539.1| DNA polymerase III, beta subunit [Shewanella baltica OS155]
gi|151363175|gb|ABS06175.1| DNA polymerase III, beta subunit [Shewanella baltica OS185]
gi|160858650|gb|ABX47184.1| DNA polymerase III, beta subunit [Shewanella baltica OS195]
gi|217496353|gb|ACK44546.1| DNA polymerase III, beta subunit [Shewanella baltica OS223]
gi|315265353|gb|ADT92206.1| DNA polymerase III, beta subunit [Shewanella baltica OS678]
gi|333816642|gb|AEG09308.1| DNA polymerase III, beta subunit [Shewanella baltica BA175]
gi|334861340|gb|AEH11811.1| DNA polymerase III, beta subunit [Shewanella baltica OS117]
gi|373888285|gb|EHQ17177.1| DNA polymerase III, beta subunit [Shewanella baltica OS183]
Length = 366
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 182/299 (60%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
+++A+L PLQ+V VE+++ LPILSN+LV + + TD EV++ V
Sbjct: 6 DRDALLKPLQLVCGAVERRHNLPILSNLLVEVSGHSLKLTGTDLEVELVGQVVVHGDIEE 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V A+K +DI++SLPE ++ + ++ ++SG+S+F+L TL A+EYP + +
Sbjct: 66 GRTTVPAKKLLDIVKSLPEQSELKVEQQDNKWLLRSGRSRFSLATLPAEEYPNVEA-FQA 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EF+L Q LK I++ FS+A QD+RYYLNGLL + + A+++DGHRL I
Sbjct: 125 EIEFSLKQGVLKSIIDSTQFSMANQDVRYYLNGLLFETEGNVLRAIATDGHRLALSHRTI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + +I+PRK V + RLLE+ + + + I +N I+ +N SKL+DG+F D
Sbjct: 185 EAQLPE-KQVIVPRKGVMEMARLLESDDLDIAIAIGDNAIRATTANTVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + +RN L ++L R SI+SN+K +GVR+ ++ LKIT ++ +E+A
Sbjct: 244 YRRVLPKGGDKIVIASRNHLKQALTRASILSNEKFRGVRIQLENGLLKITANNPEQEEA 302
>gi|300721091|ref|YP_003710359.1| DNA polymerase III subunit beta [Xenorhabdus nematophila ATCC
19061]
gi|297627576|emb|CBJ88095.1| DNA polymerase III, beta-subunit [Xenorhabdus nematophila ATCC
19061]
Length = 366
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 178/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E ++ + +
Sbjct: 6 EREQLLKPLQQVSSPLSGRPTLPILGNLLLQVTEGSLLLTGTDLETEMKARVTLTQPHEQ 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTIPARKFFDIWRGLPDGAEISVELDGDRILVRSGRSRFSLSTLPASDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EF+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL +NI
Sbjct: 125 EVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMNI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ +NP++L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQNLPSHS-VIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEA 302
>gi|37524034|ref|NP_927378.1| DNA polymerase III subunit beta [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36783457|emb|CAE12297.1| DNA polymerase III, beta chain [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 366
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 177/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ + +
Sbjct: 6 EREQLLKPLQQVSSPLSGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMMARVTLSLPHEV 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDIWRGLPDGAEISVELDGDRLLVRSGRSRFSLSTLPASDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EF+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMGI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+K S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQKLPSHS-VIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ N + L ++ R +I+SN+K +GVRL N L+IT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYFSENQLRITANNPEQEEA 302
>gi|400406009|ref|YP_006588757.1| DNA polymerase III, beta subunit [secondary endosymbiont of
Heteropsylla cubana]
gi|400364262|gb|AFP85329.1| DNA polymerase III, beta subunit [secondary endosymbiont of
Heteropsylla cubana]
Length = 366
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/314 (37%), Positives = 188/314 (59%), Gaps = 5/314 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ +V +++ +L PLQ V S + + LPIL N+L+ ++ STD E++I
Sbjct: 1 MKFIV--QRDLVLKPLQQVSSPLGGRPTLPILGNLLLQVFKNRLLLTSTDLEIEILAQVR 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + V+ARKF DI R LPE ++TI +E + M ++SG+S+++L TL A E+P
Sbjct: 59 LNAIHEEGETTVSARKFFDICRGLPEGAEITIILEGERMLMRSGRSRYSLSTLPASEFPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + EFTLSQ LK ++ FS+A QD+RYYLNG+L + + + V++DGHRL
Sbjct: 119 LD-HWHREVEFTLSQSILKRLIESTQFSMAHQDVRYYLNGMLFETKGEELRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
++I++ S S +I+PRK V L R+L N +NPV+L+I N I+ + + SKL
Sbjct: 178 ALCTISINQPLPSHS-VIVPRKGVVELVRILNNGKNPVKLQIGKNNIRATVGDYILTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
++G+F DY V S K + L ++ R +I+SN+K +GVRL + N LKIT ++
Sbjct: 237 VEGRFPDYSRVFSKNPHKILEAKCDLLKQAFTRAAILSNEKFRGVRLYLSTNQLKITANN 296
Query: 301 SNREKASST-DLIY 313
+E+A D+IY
Sbjct: 297 PEKEEAEEILDVIY 310
>gi|270264120|ref|ZP_06192387.1| DNA polymerase III, beta subunit [Serratia odorifera 4Rx13]
gi|421780986|ref|ZP_16217459.1| DNA polymerase III, beta subunit [Serratia plymuthica A30]
gi|270041769|gb|EFA14866.1| DNA polymerase III, beta subunit [Serratia odorifera 4Rx13]
gi|407756658|gb|EKF66768.1| DNA polymerase III, beta subunit [Serratia plymuthica A30]
Length = 366
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ A+ + +
Sbjct: 6 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGCLLLTGTDLEMEMVARVALSQPHEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E++ M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVTLESERMLVRSGRSRFSLSTLPAVDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
++ S S +I+PRK V L RLL+ + ++L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQQLPSHS-VIVPRKGVMELVRLLDGGDTLLQLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITANNPEQEEA 302
>gi|365968302|ref|YP_004949863.1| DNA polymerase III subunit beta [Enterobacter cloacae EcWSU1]
gi|365747215|gb|AEW71442.1| DNA polymerase III subunit beta [Enterobacter cloacae EcWSU1]
Length = 366
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 174/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ + + +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMIARVTLSQPHEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S +I+PRK V L R+L+ + P+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GDSLPNHS-VIVPRKGVIELMRMLDGGDTPLRVQIGSNNIRAHVGDFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N +KIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDSLKQAFARAAILSNEKFRGVRLYVSENQIKITANNPEQEEA 302
>gi|294665123|ref|ZP_06730426.1| DNA polymerase III subunit beta [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292605124|gb|EFF48472.1| DNA polymerase III subunit beta [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 366
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 109/295 (36%), Positives = 175/295 (59%), Gaps = 10/295 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A L PL V+++VE++ LP+L+N+LV ++S TD EV++ + T V
Sbjct: 6 QREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTLVEDAQDG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ ARK DILR+LP+ +VTI + +++G+S+FTL TL + ++P S
Sbjct: 66 -ETTIPARKLFDILRALPDGSRVTISQTGDKVTVQAGRSRFTLATLPSNDFP-----SVD 119
Query: 128 DFEFT----LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
+ E T + + LK ++ F++AQQD+RYYLNGLL + + V++DGHRL
Sbjct: 120 EVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLRCVATDGHRLALC 179
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDG 243
++ ++ + II+PRK V LQRLLE + VEL++ + I++ ++ SKLIDG
Sbjct: 180 EMELENAGGAKRQIIVPRKGVTELQRLLEGADREVELEVGRSHIRVKRGDVTFTSKLIDG 239
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
+F DY+ VI ++ V+R L SLQR +I+SN+K +GVR+ + P LKI+
Sbjct: 240 RFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISA 294
>gi|325915700|ref|ZP_08178005.1| DNA polymerase III, beta subunit [Xanthomonas vesicatoria ATCC
35937]
gi|325538117|gb|EGD09808.1| DNA polymerase III, beta subunit [Xanthomonas vesicatoria ATCC
35937]
Length = 366
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 110/295 (37%), Positives = 174/295 (58%), Gaps = 10/295 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A L PL V+++VE++ LP+L+N+LV ++S TD EV++ + T V
Sbjct: 6 QREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTMVEDAQDG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ ARK DILR+LP+ +VTI + +++G+S+FTL TL A ++P S
Sbjct: 66 -ETTIPARKLFDILRALPDGSRVTISQTGDKVTVQAGRSRFTLATLPANDFP-----SVD 119
Query: 128 DFEFT----LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
+ E T + + LK ++ F++AQQD+RYYLNGLL + + V++DGHRL
Sbjct: 120 EVEATERVAVPEAALKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLRCVATDGHRLALC 179
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDG 243
+ ++K + II+PRK V L RLLE + VEL++ + I++ ++ SKLIDG
Sbjct: 180 ETELEKAGGAKRQIIVPRKGVTELLRLLEAADREVELEVGRSHIRVKRGDVTFTSKLIDG 239
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
+F DY+ VI ++ V+R L SLQR +I+SN+K +GVR+ + P LKI+
Sbjct: 240 RFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISA 294
>gi|238754005|ref|ZP_04615364.1| DNA polymerase III subunit beta [Yersinia ruckeri ATCC 29473]
gi|238707757|gb|EEQ00116.1| DNA polymerase III subunit beta [Yersinia ruckeri ATCC 29473]
Length = 366
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 175/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ + + +
Sbjct: 6 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVTLSHPHEQ 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++T+ ++ + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDIWRGLPEGAEITVALDGDRLLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EF L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFMLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ + P+ L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSHNQLKITANNPEQEEA 302
>gi|325922760|ref|ZP_08184494.1| DNA polymerase III, beta subunit [Xanthomonas gardneri ATCC 19865]
gi|325546756|gb|EGD17876.1| DNA polymerase III, beta subunit [Xanthomonas gardneri ATCC 19865]
Length = 366
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 110/295 (37%), Positives = 175/295 (59%), Gaps = 10/295 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A L PL V+++VE++ LP+L+N+LV ++S TD EV++ + T V
Sbjct: 6 QREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTMVEDAQDG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ ARK DILR+LP+ +VTI + +++G+S+FTL TL A ++P S
Sbjct: 66 -ETTIPARKLFDILRALPDGSRVTISQTGDKVTVQAGRSRFTLATLPANDFP-----SVD 119
Query: 128 DFEFT----LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
+ E T + + LK ++ F++AQQD+RYYLNGLL + + V++DGHRL
Sbjct: 120 EVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLRCVATDGHRLALC 179
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDG 243
++ ++K + II+PRK V L RLLE + VEL++ + I++ ++ SKLIDG
Sbjct: 180 EMELEKAGGAKRQIIVPRKGVTELLRLLEAADREVELEVGRSHIRVKRGDVTFTSKLIDG 239
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
+F DY+ VI ++ V+R L SLQR +I+SN+K +GVR+ + P LKI+
Sbjct: 240 RFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISA 294
>gi|375258113|ref|YP_005017283.1| DNA polymerase III subunit beta [Klebsiella oxytoca KCTC 1686]
gi|397660745|ref|YP_006501447.1| DNA polymerase III subunit beta [Klebsiella oxytoca E718]
gi|402839994|ref|ZP_10888467.1| DNA polymerase III, beta subunit [Klebsiella sp. OBRC7]
gi|421727874|ref|ZP_16167032.1| DNA polymerase III subunit beta [Klebsiella oxytoca M5al]
gi|423105582|ref|ZP_17093284.1| DNA polymerase III subunit beta [Klebsiella oxytoca 10-5242]
gi|423111063|ref|ZP_17098758.1| DNA polymerase III subunit beta [Klebsiella oxytoca 10-5243]
gi|423117066|ref|ZP_17104757.1| DNA polymerase III subunit beta [Klebsiella oxytoca 10-5245]
gi|423126514|ref|ZP_17114193.1| DNA polymerase III subunit beta [Klebsiella oxytoca 10-5250]
gi|365907591|gb|AEX03044.1| DNA polymerase III subunit beta [Klebsiella oxytoca KCTC 1686]
gi|376376935|gb|EHS89710.1| DNA polymerase III subunit beta [Klebsiella oxytoca 10-5245]
gi|376377543|gb|EHS90312.1| DNA polymerase III subunit beta [Klebsiella oxytoca 10-5243]
gi|376380460|gb|EHS93206.1| DNA polymerase III subunit beta [Klebsiella oxytoca 10-5242]
gi|376397148|gb|EHT09783.1| DNA polymerase III subunit beta [Klebsiella oxytoca 10-5250]
gi|394348728|gb|AFN34849.1| DNA polymerase III beta subunit [Klebsiella oxytoca E718]
gi|402287309|gb|EJU35763.1| DNA polymerase III, beta subunit [Klebsiella sp. OBRC7]
gi|410371357|gb|EKP26080.1| DNA polymerase III subunit beta [Klebsiella oxytoca M5al]
Length = 366
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ + +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVTDGALSLTGTDLEMEMVARVALIQPHEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELRTVATDGHRLAVCSMPL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
++ + S +I+PRK V L R+L+ + P+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 EESLPNHS-VIVPRKGVIELMRMLDGGDTPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLDAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|381403449|ref|ZP_09928133.1| DNA polymerase III subunit beta [Pantoea sp. Sc1]
gi|380736648|gb|EIB97711.1| DNA polymerase III subunit beta [Pantoea sp. Sc1]
Length = 366
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 175/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ + TD E+++ A+ +
Sbjct: 6 EREQLLKPLQQVSGPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALTQAHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF+DI R LP+ ++T+ +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFLDICRGLPDGAEITLALEGDRMLVRSGRSRFSLSTLPASDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG++ + + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMMFETEGEELRTVATDGHRLAVCSMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ E P++++I + I+ + SKL+DG+F D
Sbjct: 185 GQALPSHS-VIVPRKGVIELLRLLDGGETPLQVQIGGSNIRAHVGDYIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL I N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKVLEAGCDLLKQAFARAAILSNEKFRGVRLYITENQLKITANNPEQEEA 302
>gi|383936072|ref|ZP_09989502.1| DNA polymerase III subunit beta [Rheinheimera nanhaiensis E407-8]
gi|383702828|dbj|GAB59593.1| DNA polymerase III subunit beta [Rheinheimera nanhaiensis E407-8]
Length = 367
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 116/306 (37%), Positives = 177/306 (57%), Gaps = 3/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ +N ++A+L PLQMV +E+++ LPILSN+LV + +S TD EV++ T
Sbjct: 1 MQFTIN--RDALLKPLQMVSGAIERRHTLPILSNVLVEVSDASLSLTGTDLEVELVATTE 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
S + V A+K +DI RSLPE + + ++ + + SGK+KFTL TL A EYP
Sbjct: 59 GLTVQSPGRVTVPAKKLLDICRSLPEASDIRVQLQGDNCILSSGKTKFTLSTLSAAEYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + + + LS+ L+ +L+ FS+A QD+RYYLNGLL ++ AV++DGHRL
Sbjct: 119 LE-SWQGEVDIQLSRAQLRKLLDDTAFSMANQDVRYYLNGLLFEVDNGSVKAVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + + IIIPRK V + RLL + E V L + N I++ SN SKL
Sbjct: 178 ALSNLELPGLTAQQKQIIIPRKGVLEIMRLLASDEQLVTLSLGQNHIRLTDSNFVFSSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ K +R+ L + R SI+SN+K +GVR + + L+I ++
Sbjct: 238 IDGRFPDYRRVLPRNSTKLVTAHRSMLKDACTRASILSNEKYRGVRFTLASHELQIVANN 297
Query: 301 SNREKA 306
E+A
Sbjct: 298 PEHEQA 303
>gi|261341639|ref|ZP_05969497.1| hypothetical protein ENTCAN_08107 [Enterobacter cancerogenus ATCC
35316]
gi|288315996|gb|EFC54934.1| DNA polymerase III, beta subunit [Enterobacter cancerogenus ATCC
35316]
Length = 366
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 175/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ + +++
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMIARVTLTQPHNA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S +I+PRK V L R+L+ E P+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GDSLPNHS-VIVPRKGVIELMRMLDGGETPLRVQIGSNNIRAHVGDFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N +KIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQIKITANNPEQEEA 302
>gi|354721452|ref|ZP_09035667.1| DNA polymerase III subunit beta [Enterobacter mori LMG 25706]
gi|401761563|ref|YP_006576570.1| DNA polymerase III subunit beta [Enterobacter cloacae subsp.
cloacae ENHKU01]
gi|400173097|gb|AFP67946.1| DNA polymerase III subunit beta [Enterobacter cloacae subsp.
cloacae ENHKU01]
Length = 366
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 174/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ + + +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMIARVTLTQPHDA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S +I+PRK V L R+L+ + P+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GDSLPNHS-VIVPRKGVIELMRMLDGGDTPLRVQIGSNNIRAHVGDFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N +KIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDSLKQAFARAAILSNEKFRGVRLYVSENQIKITANNPEQEEA 302
>gi|392976869|ref|YP_006475457.1| DNA polymerase III subunit beta [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392322802|gb|AFM57755.1| DNA polymerase III subunit beta [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 366
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 174/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ + + +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMIARVTLTQPHDA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S +I+PRK V L R+L+ + P+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GDALPNHS-VIVPRKGVIELMRMLDGGDTPLRVQIGSNNIRAHVGDFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N +KIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDSLKQAFARAAILSNEKFRGVRLYVSENQIKITANNPEQEEA 302
>gi|30065009|ref|NP_839180.1| DNA polymerase III subunit beta [Shigella flexneri 2a str. 2457T]
gi|56480410|ref|NP_709499.2| DNA polymerase III subunit beta [Shigella flexneri 2a str. 301]
gi|110807609|ref|YP_691129.1| DNA polymerase III subunit beta [Shigella flexneri 5 str. 8401]
gi|384545285|ref|YP_005729349.1| DNA polymerase III subunit beta [Shigella flexneri 2002017]
gi|415858296|ref|ZP_11532866.1| DNA polymerase III, beta subunit [Shigella flexneri 2a str. 2457T]
gi|417704584|ref|ZP_12353677.1| DNA polymerase III, beta subunit [Shigella flexneri K-218]
gi|417709815|ref|ZP_12358829.1| DNA polymerase III, beta subunit [Shigella flexneri VA-6]
gi|417725519|ref|ZP_12374302.1| DNA polymerase III, beta subunit [Shigella flexneri K-304]
gi|417730747|ref|ZP_12379429.1| DNA polymerase III, beta subunit [Shigella flexneri K-671]
gi|417735845|ref|ZP_12384481.1| DNA polymerase III, beta subunit [Shigella flexneri 2747-71]
gi|417740656|ref|ZP_12389222.1| DNA polymerase III, beta subunit [Shigella flexneri 4343-70]
gi|417745673|ref|ZP_12394190.1| DNA polymerase III, beta subunit [Shigella flexneri 2930-71]
gi|418259678|ref|ZP_12882405.1| DNA polymerase III, beta subunit [Shigella flexneri 6603-63]
gi|420322773|ref|ZP_14824590.1| DNA polymerase III, beta subunit [Shigella flexneri 2850-71]
gi|420333644|ref|ZP_14835279.1| DNA polymerase III, beta subunit [Shigella flexneri K-1770]
gi|420344172|ref|ZP_14845629.1| DNA polymerase III, beta subunit [Shigella flexneri K-404]
gi|424839984|ref|ZP_18264621.1| DNA polymerase III subunit beta [Shigella flexneri 5a str. M90T]
gi|30043270|gb|AAP18991.1| DNA polymerase III, beta-subunit [Shigella flexneri 2a str. 2457T]
gi|56383961|gb|AAN45206.2| DNA polymerase III, beta-subunit [Shigella flexneri 2a str. 301]
gi|110617157|gb|ABF05824.1| DNA polymerase III, beta-subunit [Shigella flexneri 5 str. 8401]
gi|281603072|gb|ADA76056.1| DNA polymerase III, beta-subunit [Shigella flexneri 2002017]
gi|313647709|gb|EFS12157.1| DNA polymerase III, beta subunit [Shigella flexneri 2a str. 2457T]
gi|332750522|gb|EGJ80931.1| DNA polymerase III, beta subunit [Shigella flexneri K-671]
gi|332750693|gb|EGJ81101.1| DNA polymerase III, beta subunit [Shigella flexneri 4343-70]
gi|332751746|gb|EGJ82144.1| DNA polymerase III, beta subunit [Shigella flexneri 2747-71]
gi|332764072|gb|EGJ94309.1| DNA polymerase III, beta subunit [Shigella flexneri 2930-71]
gi|332996041|gb|EGK15668.1| DNA polymerase III, beta subunit [Shigella flexneri VA-6]
gi|332997108|gb|EGK16724.1| DNA polymerase III, beta subunit [Shigella flexneri K-218]
gi|333013256|gb|EGK32629.1| DNA polymerase III, beta subunit [Shigella flexneri K-304]
gi|383469036|gb|EID64057.1| DNA polymerase III subunit beta [Shigella flexneri 5a str. M90T]
gi|391244332|gb|EIQ03616.1| DNA polymerase III, beta subunit [Shigella flexneri 2850-71]
gi|391244800|gb|EIQ04077.1| DNA polymerase III, beta subunit [Shigella flexneri K-1770]
gi|391261455|gb|EIQ20502.1| DNA polymerase III, beta subunit [Shigella flexneri K-404]
gi|397894190|gb|EJL10639.1| DNA polymerase III, beta subunit [Shigella flexneri 6603-63]
Length = 366
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 175/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ +N + ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRMLDGGDNLLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|295095339|emb|CBK84429.1| DNA polymerase III, beta subunit [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 366
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 174/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ + + +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMIARVTLTQPHDA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S +I+PRK V L R+L+ E P+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GDSLPNHS-VIVPRKGVIELMRMLDGGETPLRVQIGSNNIRAHVGDFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N +KIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQIKITANNPEQEEA 302
>gi|345297186|ref|YP_004826544.1| DNA polymerase III subunit beta [Enterobacter asburiae LF7a]
gi|345091123|gb|AEN62759.1| DNA polymerase III, beta subunit [Enterobacter asburiae LF7a]
Length = 366
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 174/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ + + +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMIARVTLTQPHDA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S +I+PRK V L R+L+ E P+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GDSLPNHS-VIVPRKGVIELMRMLDGGETPLRVQIGSNNIRAHVGDFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N +KIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQIKITANNPEQEEA 302
>gi|338998451|ref|ZP_08637125.1| DNA polymerase III subunit beta [Halomonas sp. TD01]
gi|338764768|gb|EGP19726.1| DNA polymerase III subunit beta [Halomonas sp. TD01]
Length = 367
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 169/288 (58%), Gaps = 1/288 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ A+L PL +V +VE++ LP+LSN+L+ ++++ TD EV++ T +
Sbjct: 7 REALLRPLTLVAGVVERRQTLPVLSNVLIQVEGDQVALTGTDLEVELVGRTVASQVDQEG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
V ARK +DI +SLP+ ++ + +E ++SG+S+FTL TL E+P + ++
Sbjct: 67 AATVPARKLMDICKSLPDQSEIQLAVEEGRAVLRSGRSRFTLSTLPVAEFPNIE-DADGS 125
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
E ++ + TLK ++ F++AQQD+RYYLNG+LL Q + V++DGHRL ID
Sbjct: 126 QELSVPRGTLKHLIESTSFAMAQQDVRYYLNGMLLEIQSNLLRTVATDGHRLAMCSRPID 185
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+I+PRK + L RLL++ + PV L + + ++ + SKLIDGKF DY
Sbjct: 186 IVVDQAQKLIVPRKGILELSRLLDDSDEPVSLTLGSTHVRAHTGDFTFTSKLIDGKFPDY 245
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
+ V+ +K + R +L + L R +I+SN+K +GVRL ++ N LK+
Sbjct: 246 ERVVPRNGDKVLIAERAELRQVLSRTAILSNEKYRGVRLYLEENNLKV 293
>gi|194363780|ref|YP_002026390.1| DNA polymerase III subunit beta [Stenotrophomonas maltophilia
R551-3]
gi|194346584|gb|ACF49707.1| DNA polymerase III, beta subunit [Stenotrophomonas maltophilia
R551-3]
Length = 366
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 106/295 (35%), Positives = 177/295 (60%), Gaps = 10/295 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A L PL V+++VE++ LP+L+N LV + ++S TD EV++ + AV
Sbjct: 6 QREAFLKPLAQVVNVVERRQTLPVLANFLVQVQNGQLSLTGTDLEVEMVSRIAVEDAQDG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ ARK +I+R+LP+ ++T+ + +++G+S+FTL TL + ++P S
Sbjct: 66 -ETTIPARKLFEIIRALPDGSRITVSQTGDKITVQAGRSRFTLATLPSNDFP-----SVD 119
Query: 128 DFEFT----LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
+ E T + + TLK ++ F++AQQD+RYYLNGLL + + V++DGHRL
Sbjct: 120 EVEATERVAIGEATLKELIERTAFAMAQQDVRYYLNGLLFDLRGDALRTVATDGHRLALC 179
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDG 243
+ ++ K S II+PRK V LQRLLE+ + +EL++ + +++ ++ SKLIDG
Sbjct: 180 ETDLAKPSGSKRQIIVPRKGVTELQRLLESGDREIELEVGRSHVRVKRDDVTFTSKLIDG 239
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
+F DY+ VI ++ VNR L SLQR +I+SN+K +G+R+ + P LKI+
Sbjct: 240 RFPDYEAVIPIGADREVKVNRESLRASLQRAAILSNEKYRGIRVEVSPGNLKISA 294
>gi|152972608|ref|YP_001337754.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238897211|ref|YP_002921959.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|262040465|ref|ZP_06013708.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|330005214|ref|ZP_08305173.1| DNA polymerase III, beta subunit [Klebsiella sp. MS 92-3]
gi|365141178|ref|ZP_09347033.1| DNA polymerase III subunit beta [Klebsiella sp. 4_1_44FAA]
gi|386037246|ref|YP_005957159.1| DNA polymerase III subunit beta [Klebsiella pneumoniae KCTC 2242]
gi|402778299|ref|YP_006633845.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|419765296|ref|ZP_14291534.1| DNA polymerase III, beta subunit [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|424833075|ref|ZP_18257803.1| DNA polymerase III, beta subunit [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|424931087|ref|ZP_18349459.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|425074175|ref|ZP_18477278.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425083879|ref|ZP_18486976.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|425084811|ref|ZP_18487904.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|425093994|ref|ZP_18497078.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|428931897|ref|ZP_19005485.1| DNA polymerase III subunit beta [Klebsiella pneumoniae JHCK1]
gi|449047867|ref|ZP_21731035.1| DNA polymerase III subunit beta [Klebsiella pneumoniae hvKP1]
gi|150957457|gb|ABR79487.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238549541|dbj|BAH65892.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|259042218|gb|EEW43246.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|328536346|gb|EGF62708.1| DNA polymerase III, beta subunit [Klebsiella sp. MS 92-3]
gi|339764374|gb|AEK00595.1| DNA polymerase III subunit beta [Klebsiella pneumoniae KCTC 2242]
gi|363653023|gb|EHL92016.1| DNA polymerase III subunit beta [Klebsiella sp. 4_1_44FAA]
gi|397741804|gb|EJK89024.1| DNA polymerase III, beta subunit [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|402539275|gb|AFQ63424.1| DNA polymerase III beta subunit [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|405595640|gb|EKB69010.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405598371|gb|EKB71600.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|405608226|gb|EKB81177.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405610490|gb|EKB83294.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|407805274|gb|EKF76525.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|414710524|emb|CCN32228.1| DNA polymerase III, beta subunit [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|426307594|gb|EKV69672.1| DNA polymerase III subunit beta [Klebsiella pneumoniae JHCK1]
gi|448877242|gb|EMB12210.1| DNA polymerase III subunit beta [Klebsiella pneumoniae hvKP1]
Length = 366
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 174/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ + +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALVQPHEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELRTVATDGHRLAVCSMPL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + S +I+PRK V L R+L+ + P+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 EASLPNHS-VIVPRKGVIELMRMLDGGDTPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|296100373|ref|YP_003610519.1| DNA polymerase III subunit beta [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|401675627|ref|ZP_10807617.1| DNA polymerase III subunit beta [Enterobacter sp. SST3]
gi|295054832|gb|ADF59570.1| DNA polymerase III subunit beta [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|400217158|gb|EJO48054.1| DNA polymerase III subunit beta [Enterobacter sp. SST3]
Length = 366
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 174/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ + + +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMIARVTLTQPHDA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S +I+PRK V L R+L+ + P+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GDSLPNHS-VIVPRKGVIELMRMLDGGDTPLRVQIGSNNIRAHVGDFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N +KIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDSLKQAFARAAILSNEKFRGVRLYVSENQIKITANNPEQEEA 302
>gi|119773156|ref|YP_925896.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
gi|119765656|gb|ABL98226.1| DNA polymerase III, beta subunit [Shewanella amazonensis SB2B]
Length = 366
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 181/299 (60%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
+++A+L PLQ+V VE+++ LPIL+N+LV + + TD EV++ V
Sbjct: 6 DRDALLKPLQLVSGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGEATVHGDVQE 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V A+K +DI++SLPE ++ + + ++ G+S+F+L TL A+EYP + +
Sbjct: 66 GRTTVPAKKLLDIVKSLPEQTEIKVEQQENKWLLRCGRSRFSLATLPAEEYPNVE-AFRP 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
D EFTL Q TLK +++ FS+A QD+RYYLNGLL+ + + AV++DGHRL I
Sbjct: 125 DIEFTLKQGTLKSLIDSTQFSMANQDVRYYLNGLLIETEGNVLRAVATDGHRLALSHRMI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ +I+PRK V L RLL+ ++ + L I + I+ + SKL+DG+F D
Sbjct: 185 EASLPE-KQVIVPRKGVVELSRLLDAEDQDITLAIGESAIRATTATAVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + +RN+L ++L R SI+SN+K +GVR++++ LKIT ++ +E+A
Sbjct: 244 YRRVLPKGGDKIVIASRNQLKQALLRASILSNEKFRGVRILLEDGLLKITANNPEQEEA 302
>gi|429088853|ref|ZP_19151585.1| DNA polymerase III beta subunit [Cronobacter universalis NCTC 9529]
gi|426508656|emb|CCK16697.1| DNA polymerase III beta subunit [Cronobacter universalis NCTC 9529]
Length = 366
Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 175/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M + SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMRVSSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + +++ V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEDLRTVATDGHRLAVCAMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + S +I+PRK V L R+L+ + P+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQPLPNHS-VIVPRKGVLELMRMLDGGDAPLRIQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|423122834|ref|ZP_17110518.1| DNA polymerase III subunit beta [Klebsiella oxytoca 10-5246]
gi|376392115|gb|EHT04782.1| DNA polymerase III subunit beta [Klebsiella oxytoca 10-5246]
Length = 366
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 175/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ + +S TD E+++ A+ + +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVSDGALSLTGTDLEMEMVARVALIQPHEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGDELRTVATDGHRLAVCSMPL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + S +I+PRK V L R+L+ + P+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GESLPNHS-VIVPRKGVIELMRMLDGGDTPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLDAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|418022943|ref|ZP_12661929.1| DNA polymerase III, beta subunit [Shewanella baltica OS625]
gi|353537945|gb|EHC07501.1| DNA polymerase III, beta subunit [Shewanella baltica OS625]
Length = 366
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 182/299 (60%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
+++A+L PLQ+V VE+++ LPILSN+LV + + TD EV++ V
Sbjct: 6 DRDALLKPLQLVCGAVERRHNLPILSNLLVEVSGHSLKLTGTDLEVELVGQVVVHGEIEE 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V A+K +DI++SLPE ++ + ++ ++SG+S+F+L TL A+EYP + +
Sbjct: 66 GRTTVPAKKLLDIVKSLPEQSELKVEQQDNKWLLRSGRSRFSLATLPAEEYPNVEA-FQA 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EF+L Q LK I++ FS+A QD+RYYLNGLL + + A+++DGHRL I
Sbjct: 125 EIEFSLKQGVLKSIIDSTQFSMANQDVRYYLNGLLFETEGNVLRAIATDGHRLALSHRTI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + +I+PRK V + RLLE+ + + + I +N I+ +N SKL+DG+F D
Sbjct: 185 EAQLPE-KQVIVPRKGVMEMARLLESDDLDIAIAIGDNAIRATTANTVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + +RN L ++L R SI+SN+K +GVR+ ++ LKIT ++ +E+A
Sbjct: 244 YRRVLPKGGDKIVIASRNYLKQALTRASILSNEKFRGVRIQLENGLLKITANNPEQEEA 302
>gi|149375635|ref|ZP_01893404.1| DNA polymerase III, beta subunit [Marinobacter algicola DG893]
gi|149360037|gb|EDM48492.1| DNA polymerase III, beta subunit [Marinobacter algicola DG893]
Length = 371
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 177/309 (57%), Gaps = 3/309 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L ++ E ++L PLQ + +VE+K +P+LSN+L+ ++ T+ EV++ +
Sbjct: 5 MKLTISRE--SLLTPLQSIAGVVERKQTMPVLSNVLLVAEDNTLTLTGTNMEVELVGRVS 62
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + I V ARK DI R+L + + + +E + ++ G S FTL TL A+ +P
Sbjct: 63 PVHVDQPGRITVPARKLSDICRALGDEAPIELALEGDRLHLRCGASHFTLSTLPAEHFPN 122
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ +++ F L QK L + + F++AQQD+RYYLNGLLL K ++ V++DGHRL
Sbjct: 123 VEDDAE-SFGLELPQKELSRMFDATAFAMAQQDVRYYLNGLLLEVDKDHVRTVATDGHRL 181
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
++ +I+PRK V L RLL++ E PV L I +N ++ + SKL
Sbjct: 182 AMAHFDLPTGCPEPRQVIVPRKGVLELARLLDDVETPVTLVIGDNHLRATVGSYTFTSKL 241
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
I+GKF DY VI +K L +R L +LQR I+S++ ++GVRL + PN L++ ++
Sbjct: 242 IEGKFPDYNRVIPRGGDKVVLADRATLKNTLQRAGILSHENIRGVRLNLAPNELQVFANN 301
Query: 301 SNREKASST 309
++E+A
Sbjct: 302 PDQEQAEDA 310
>gi|206578911|ref|YP_002235887.1| DNA polymerase III subunit beta [Klebsiella pneumoniae 342]
gi|288932894|ref|YP_003436953.1| DNA polymerase III subunit beta [Klebsiella variicola At-22]
gi|290511690|ref|ZP_06551058.1| DNA polymerase III, beta subunit [Klebsiella sp. 1_1_55]
gi|206567969|gb|ACI09745.1| DNA polymerase III, beta subunit [Klebsiella pneumoniae 342]
gi|288887623|gb|ADC55941.1| DNA polymerase III, beta subunit [Klebsiella variicola At-22]
gi|289775480|gb|EFD83480.1| DNA polymerase III, beta subunit [Klebsiella sp. 1_1_55]
Length = 366
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 174/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ + +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALVQPHEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELRTVATDGHRLAVCSMPL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + S +I+PRK V L R+L+ + P+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 EASLPNHS-VIVPRKGVIELMRMLDGGDTPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLDAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|259910294|ref|YP_002650650.1| DNA polymerase III subunit beta [Erwinia pyrifoliae Ep1/96]
gi|385786601|ref|YP_005817710.1| DNA polymerase III subunit beta [Erwinia sp. Ejp617]
gi|387873316|ref|YP_005804705.1| DNA polymerase III subunit beta [Erwinia pyrifoliae DSM 12163]
gi|224965916|emb|CAX57449.1| DNA polymerase III subunit beta [Erwinia pyrifoliae Ep1/96]
gi|283480418|emb|CAY76334.1| DNA polymerase III, beta-subunit [Erwinia pyrifoliae DSM 12163]
gi|310765873|gb|ADP10823.1| DNA polymerase III subunit beta [Erwinia sp. Ejp617]
Length = 366
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 181/307 (58%), Gaps = 3/307 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ A+ + +
Sbjct: 6 ERERLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGTLLLTGTDLEMEMVARVALTHDHQP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVILEGERMLVRSGRSRFSLSTLPASDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ ++ ++++I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELVRLLDGGDSLLQIQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKAS 307
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL I N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLDAGCDLLKQAFARAAILSNEKFRGVRLHISENQLKITANNPEQEEAE 303
Query: 308 ST-DLIY 313
D+ Y
Sbjct: 304 EMLDVTY 310
>gi|336313672|ref|ZP_08568611.1| DNA polymerase III beta subunit [Shewanella sp. HN-41]
gi|335862693|gb|EGM67885.1| DNA polymerase III beta subunit [Shewanella sp. HN-41]
Length = 366
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 182/299 (60%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
+++A+L PLQ+V VE+++ LPIL+N+LV + + TD EV++ V
Sbjct: 6 DRDALLKPLQLVCGAVERRHNLPILANLLVEVSGHSLKLTGTDLEVELVGQAVVHGDIEE 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V A+K +DI++SLPE ++ + ++ ++SG+S+F+L TL A+EYP + +
Sbjct: 66 GRTTVPAKKLLDIVKSLPEQSELKVEQQDNKWLLRSGRSRFSLATLPAEEYPNVEA-FQA 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EF+L Q LK I++ FS+A QD+RYYLNGLL + + A+++DGHRL I
Sbjct: 125 EIEFSLKQGVLKSIIDSTQFSMANQDVRYYLNGLLFETEGNVLRAIATDGHRLALSHRTI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + +I+PRK V + RLLE+ + + + I +N I+ ++ SKL+DG+F D
Sbjct: 185 EAQLPE-KQVIVPRKGVMEMARLLESDDLDIAIAIGDNAIRATTASTVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + +RN L ++L R SI+SN+K +GVR+ ++ LKIT ++ +E+A
Sbjct: 244 YRRVLPKGGDKIVIASRNHLKQALTRASILSNEKFRGVRIQLEAGLLKITANNPEQEEA 302
>gi|429107520|ref|ZP_19169389.1| DNA polymerase III beta subunit [Cronobacter malonaticus 681]
gi|426294243|emb|CCJ95502.1| DNA polymerase III beta subunit [Cronobacter malonaticus 681]
Length = 366
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ V ARKF DI R LPE ++ + ++ M + SG+S+F+L TL A ++P + + +
Sbjct: 66 GAMTVPARKFFDICRGLPEGAEIAVQLDGDRMRVSSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + +++ V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEDLRTVATDGHRLAVCAMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + S +I+PRK V L R+L+ + P+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQPLPNHS-VIVPRKGVLELMRMLDGGDAPLRIQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|380509974|ref|ZP_09853381.1| DNA polymerase III subunit beta [Xanthomonas sacchari NCPPB 4393]
Length = 366
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 106/295 (35%), Positives = 173/295 (58%), Gaps = 10/295 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A L PL V+++VE++ LP+L+N LV ++S TD EV++ + AV
Sbjct: 6 QREAFLKPLAQVVNVVERRQTLPVLANFLVQVQGGQLSLTGTDLEVEMVSRIAVDDAQDG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ ARK +I+R+LP+ KVT+ + +++G+S+FTL TL A ++P S
Sbjct: 66 -ETTIPARKLFEIVRALPDGSKVTVSQSGDKITVQAGRSRFTLATLPANDFP-----SVD 119
Query: 128 DFEFT----LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
+ E T + + LK ++ F++AQQD+RYYLNGLL + + + V++DGHRL
Sbjct: 120 EVEATERVVVPEAALKELIERTAFAMAQQDVRYYLNGLLFDLRDQTLRCVATDGHRLALC 179
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDG 243
+ ++ + II+PRK V LQRLLE E VEL++ +++ ++ SKLIDG
Sbjct: 180 ETELENAGGAKRQIIVPRKGVTELQRLLEGGEREVELEVGRAHVRVKRDDVTFTSKLIDG 239
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
+F DY+ VI ++ ++R L +LQR +I+SN+K +GVR+ + P LKI+
Sbjct: 240 RFPDYEAVIPIGADREVKLDRETLRAALQRAAILSNEKYRGVRVEVSPGQLKISA 294
>gi|397168831|ref|ZP_10492267.1| DNA polymerase sliding clamp subunit [Alishewanella aestuarii B11]
gi|396089418|gb|EJI86992.1| DNA polymerase sliding clamp subunit [Alishewanella aestuarii B11]
Length = 367
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 177/306 (57%), Gaps = 3/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++N ++A+L PLQMV +E+++ LPILSN+L+ ++ +S TD EV++ T
Sbjct: 1 MQFLIN--RDALLKPLQMVSGAIERRHNLPILSNVLLDVTADTLSLTGTDLEVELVASTE 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
S I V A+K +DI RSLPE + + ++ ++ + SGKSKFTL TL A EYP
Sbjct: 59 QLQIQSPGRITVPAKKLLDICRSLPEQSDIQVAVQGENCVLTSGKSKFTLSTLSAAEYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + + E LS++ L+ +L FS+A QD+RYYLNGLL + AV++DGHRL
Sbjct: 119 LE-SWQGEVEINLSRQQLRKLLEDTAFSMANQDVRYYLNGLLFEVDNGTLTAVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + IIIPRK V + RLL N E V L + N I++ S+ SKL
Sbjct: 178 AMSTLALPAVSGQQKQIIIPRKGVLEIMRLLANDEQQVSLSLGQNHIRLTDSSFSFSSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ K +R L + R SI+SN+K +GVR + + ++I ++
Sbjct: 238 IDGRFPDYRRVLPRNSTKLVTAHRAVLKDACIRASILSNEKYRGVRFTLSNHEVQIVANN 297
Query: 301 SNREKA 306
E+A
Sbjct: 298 PEHEQA 303
>gi|388256239|ref|ZP_10133420.1| DNA polymerase III subunit beta [Cellvibrio sp. BR]
gi|387939939|gb|EIK46489.1| DNA polymerase III subunit beta [Cellvibrio sp. BR]
Length = 367
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 178/298 (59%), Gaps = 1/298 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ A+L PLQ+V +VE++ LP+LSN+L+ N +++S TD EV+I + S
Sbjct: 7 REALLKPLQLVAGVVERRQTLPVLSNVLIQLNGDQLSLTGTDLEVEIVGRITLEQAGQSG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
I V ARK +DI RSLP+ + +E+ + +KSG+S+FTL TL A ++P + ++ +
Sbjct: 67 EITVPARKLVDICRSLPDGSNIEFTLEDNRILVKSGRSRFTLSTLPAGDFPNVE-DAPGN 125
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
F+ +Q+ +K ++ F++AQQD+RYYLNG+L ++ + V++DGHR+ +
Sbjct: 126 LRFSCAQQEVKRLIERTAFAMAQQDVRYYLNGMLWEVRQDQLRVVATDGHRMAMCTRAVA 185
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ I+PRK V L RLL++ VE+ +S N I++ + SKL+DGKF +Y
Sbjct: 186 VNANEVVQAILPRKGVLELSRLLDDSSAQVEVVLSANHIRVTSMDYTFTSKLVDGKFPEY 245
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ V+ K + +R +L ++ R +I+SN+K +GVRL++ L I ++ +E+A
Sbjct: 246 ERVLPRGGNKVVIGSRLELKQAFARTAILSNEKYRGVRLLLSDGSLTIVANNPEQEEA 303
>gi|393763513|ref|ZP_10352133.1| DNA polymerase sliding clamp subunit [Alishewanella agri BL06]
gi|392605581|gb|EIW88472.1| DNA polymerase sliding clamp subunit [Alishewanella agri BL06]
Length = 367
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 177/306 (57%), Gaps = 3/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++N ++A+L PLQMV +E+++ LPILSN+L+ ++ +S TD EV++ T
Sbjct: 1 MQFLIN--RDALLKPLQMVSGAIERRHNLPILSNVLLDVTADTLSLTGTDLEVELVASTE 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
S I V A+K +DI RSLPE + + ++ ++ + SGKSKFTL TL A EYP
Sbjct: 59 QLQIQSPGRITVPAKKLLDICRSLPEQSDIQVAVQGENCVLTSGKSKFTLSTLSAAEYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + + E LS++ L+ +L FS+A QD+RYYLNGLL + AV++DGHRL
Sbjct: 119 LE-SWQGEVEINLSRQQLRKLLEDTAFSMANQDVRYYLNGLLFEVDNGTLTAVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + IIIPRK V + RLL N E V L + N I++ S+ SKL
Sbjct: 178 AMSTLALPAVSGQQKQIIIPRKGVLEIMRLLANDEQQVSLSLGQNHIRLTDSSFSFSSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ K +R L + R SI+SN+K +GVR + + ++I ++
Sbjct: 238 IDGRFPDYRRVLPRNSTKLVTAHRAVLKDACIRASILSNEKYRGVRFTLSNHEVQIVANN 297
Query: 301 SNREKA 306
E+A
Sbjct: 298 PEHEQA 303
>gi|407693846|ref|YP_006818634.1| DNA polymerase III subunit beta [Alcanivorax dieselolei B5]
gi|407251184|gb|AFT68291.1| DNA polymerase III, beta subunit [Alcanivorax dieselolei B5]
Length = 366
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 173/296 (58%), Gaps = 4/296 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ +N E+ +L PLQ V ++VEK+ LP+LSN+LV + ++ TD E+++
Sbjct: 1 MKFSINREQ--VLKPLQQVAAVVEKRQTLPVLSNVLVEVSDGWLALTGTDLELELVARLP 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ N S V ARK +DI++SLP ++ ++ + M +KSG+S+F+L TL A E+P
Sbjct: 59 LEGENQSGETTVPARKLVDIVKSLPAEAEIRFEVDGERMLVKSGRSRFSLSTLPASEFPS 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
K F ++ L+ +++ FS+AQQD+RYYLNG+L + + AV++DGHRL
Sbjct: 119 QE-EDKAASGFDIAPGVLRGLIDRTAFSMAQQDVRYYLNGMLFELRPGALRAVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
++ S +I+PRK V L R+L + V L + N ++I+ I SKL
Sbjct: 178 ALCDAELEGPDQEAS-VILPRKGVMELSRILADAGEMVRLTLGRNHVRIVAGAITFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
+DGKF +Y+ VI ++ L +R L +++ R++I+SN+K +GVR+ + L++
Sbjct: 237 VDGKFPEYERVIPKDGQRRILADRETLRQAMARVAILSNEKYRGVRVQLSEGSLRV 292
>gi|421581695|ref|ZP_16027237.1| DNA polymerase III subunit beta, partial [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00326]
gi|402516305|gb|EJW23717.1| DNA polymerase III subunit beta, partial [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00326]
Length = 293
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 167/290 (57%), Gaps = 2/290 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ + +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLSQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIESTQFSMAHQDVRYYLNGMLFETEGSELRTVATDGHRLAVCSMPL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ ENP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 EASLPSHS-VIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT
Sbjct: 244 YRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKIT 293
>gi|429094660|ref|ZP_19157186.1| DNA polymerase III beta subunit [Cronobacter dublinensis 1210]
gi|426740231|emb|CCJ83299.1| DNA polymerase III beta subunit [Cronobacter dublinensis 1210]
Length = 366
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + ++ M + SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLDGDRMRVSSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL+Q T+K ++ FS+A QD+RYYLNG+L + +++ V++DGHRL + +
Sbjct: 125 EVEFTLAQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEDLRTVATDGHRLAVCSMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + S +I+PRK V L R+L+ + P+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQPLPNHS-VIVPRKGVLELMRMLDGGDAPLRIQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|389810729|ref|ZP_10205994.1| DNA polymerase III subunit beta [Rhodanobacter thiooxydans LCS2]
gi|388440589|gb|EIL96951.1| DNA polymerase III subunit beta [Rhodanobacter thiooxydans LCS2]
Length = 366
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 107/290 (36%), Positives = 175/290 (60%), Gaps = 4/290 (1%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ V+ +VE++ LP+L+N+LV + K+S TD EV++ TA
Sbjct: 6 QREALLKPLQQVVGVVERRQTLPVLANLLVKVGAGKLSLTGTDLEVEMVA-TAEAEKLVD 64
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ + ARK DI+R+LP+ ++ + + + + +G+S+FTL TL A E+P T++
Sbjct: 65 GEVTIPARKLFDIVRALPDGARIDLKLNGDRVALNAGRSRFTLTTLPASEFP--TVDEIE 122
Query: 128 DFE-FTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVN 186
E +L ++ L+ ++ F++A QD+RYYLNG+LL Q+ + V++DGHRL +
Sbjct: 123 LVEKVSLPEEALRDLMERTAFAMANQDVRYYLNGMLLDLQEHTLRCVATDGHRLAMKETG 182
Query: 187 IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFL 246
+ S+ IIIPRK V L LLE + VEL+ N +++ ++ SKLIDG+F
Sbjct: 183 LQNSVSTRRQIIIPRKGVNELVGLLETGDGQVELEFGRNHLRVRRGDVVFTSKLIDGRFP 242
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
DY+ VI +K+ ++R L +LQR +I+SN+K +GVRL + P L+I
Sbjct: 243 DYEAVIPLGADKTATIDREVLRGALQRAAILSNEKYRGVRLELSPGKLRI 292
>gi|417830114|ref|ZP_12476652.1| DNA polymerase III, beta subunit [Shigella flexneri J1713]
gi|335573345|gb|EGM59702.1| DNA polymerase III, beta subunit [Shigella flexneri J1713]
Length = 366
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 175/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEL 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ +N + ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRMLDGGDNLLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|384417081|ref|YP_005626441.1| DNA polymerase III subunit beta [Xanthomonas oryzae pv. oryzicola
BLS256]
gi|353459995|gb|AEQ94274.1| DNA polymerase III, beta subunit [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 366
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 108/295 (36%), Positives = 175/295 (59%), Gaps = 10/295 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A L PL V+++VE++ LP+L+N+LV ++S TD EV++ + T V
Sbjct: 6 QREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTMVEDAQDG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ ARK DILR+LP+ +VTI + +++G+S+FTL TL + ++P S
Sbjct: 66 -ETTIPARKLFDILRALPDGSRVTISQTGDKVTVQAGRSRFTLVTLPSNDFP-----SVD 119
Query: 128 DFEFT----LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
+ E T + + LK ++ F++AQQD+RYYLNGLL + + V++DGHRL
Sbjct: 120 EVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLRCVATDGHRLALC 179
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDG 243
++ ++ + II+PRK V LQRLLE + VEL++ + I++ ++ SKLIDG
Sbjct: 180 EMELENAGGAKRQIIVPRKGVTELQRLLEGADREVELEVGRSHIRVKRGDVTFTSKLIDG 239
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
+F DY+ V+ ++ V+R L SLQR +I+SN+K +GVR+ + P LKI+
Sbjct: 240 RFPDYEAVMPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISA 294
>gi|334121944|ref|ZP_08495987.1| DNA-directed DNA polymerase III beta subunit [Enterobacter
hormaechei ATCC 49162]
gi|419959150|ref|ZP_14475207.1| DNA polymerase III subunit beta [Enterobacter cloacae subsp.
cloacae GS1]
gi|333392526|gb|EGK63628.1| DNA-directed DNA polymerase III beta subunit [Enterobacter
hormaechei ATCC 49162]
gi|388606119|gb|EIM35332.1| DNA polymerase III subunit beta [Enterobacter cloacae subsp.
cloacae GS1]
Length = 366
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 174/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ + + +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMIARVTLTQPHDA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S +I+PRK V L R+L+ + P+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GDSLPNHS-VIVPRKGVIELMRMLDGGDTPLRVQIGSNNIRAHVGDFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N +KIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQIKITANNPEQEEA 302
>gi|15603025|ref|NP_246097.1| DNA polymerase III subunit beta [Pasteurella multocida subsp.
multocida str. Pm70]
gi|378773698|ref|YP_005175941.1| DNA polymerase III subunit beta [Pasteurella multocida 36950]
gi|383309627|ref|YP_005362437.1| DNA polymerase III subunit beta [Pasteurella multocida subsp.
multocida str. HN06]
gi|386833614|ref|YP_006238928.1| DNA polymerase III, beta subunit, putative [Pasteurella multocida
subsp. multocida str. 3480]
gi|417853920|ref|ZP_12499254.1| DNA polymerase III subunit beta [Pasteurella multocida subsp.
multocida str. Anand1_goat]
gi|421263906|ref|ZP_15714918.1| DNA polymerase III subunit beta [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|425063855|ref|ZP_18466980.1| DNA polymerase III beta subunit [Pasteurella multocida subsp.
gallicida X73]
gi|425066022|ref|ZP_18469142.1| DNA polymerase III beta subunit [Pasteurella multocida subsp.
gallicida P1059]
gi|12721508|gb|AAK03244.1| DnaN [Pasteurella multocida subsp. multocida str. Pm70]
gi|338218778|gb|EGP04523.1| DNA polymerase III subunit beta [Pasteurella multocida subsp.
multocida str. Anand1_goat]
gi|356596246|gb|AET14972.1| DNA polymerase III subunit beta [Pasteurella multocida 36950]
gi|380870899|gb|AFF23266.1| DNA polymerase III subunit beta [Pasteurella multocida subsp.
multocida str. HN06]
gi|385200314|gb|AFI45169.1| DNA polymerase III, beta subunit, putative [Pasteurella multocida
subsp. multocida str. 3480]
gi|401688917|gb|EJS84448.1| DNA polymerase III subunit beta [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|404382409|gb|EJZ78870.1| DNA polymerase III beta subunit [Pasteurella multocida subsp.
gallicida X73]
gi|404382562|gb|EJZ79022.1| DNA polymerase III beta subunit [Pasteurella multocida subsp.
gallicida P1059]
Length = 366
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 112/306 (36%), Positives = 183/306 (59%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ +V+ E +L PLQ V ++ + +P+L+N+L+ E++ TD EV+++T TA
Sbjct: 1 MQFIVSREN--LLKPLQQVCGVLSSRPNIPVLNNVLLQIRGERLVITGTDLEVELSTETA 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+KF+DI RSLPE ++++ E +KSG+SKF L TL A+EYP
Sbjct: 59 LLRTDVQGSFTIPAKKFLDICRSLPEEAEISVSFEEDRAIVKSGRSKFNLSTLPAEEYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+T + + + +FTL Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHRL
Sbjct: 119 LT-DWQSEVDFTLEQSTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ +++ + S +I+PRK V L RLLEN + P L+I N ++I NI SKL
Sbjct: 178 AVCTIALEQDLQTHS-VILPRKGVLELVRLLENTDLPARLQIGTNNLRIDLGNIIFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ + + L ++ R +I+SN++ + VRL + N LKIT ++
Sbjct: 237 IDGRFPDYRRVLPRNATRILEAEWDVLKQAFVRAAILSNERFRSVRLQLSENQLKITATN 296
Query: 301 SNREKA 306
+E A
Sbjct: 297 PEQEVA 302
>gi|157368282|ref|YP_001476271.1| DNA polymerase III subunit beta [Serratia proteamaculans 568]
gi|157320046|gb|ABV39143.1| DNA polymerase III, beta subunit [Serratia proteamaculans 568]
Length = 366
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 178/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ A+ + +
Sbjct: 6 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGCLLLTGTDLEMEMVARVALSQPHEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARK DI R LPE ++T+ +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKLFDICRGLPEGAEITVTLEGERMLVRSGRSRFSLSTLPAVDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EF+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFSLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
++ S S +I+PRK V L RLL+ + ++L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQQLPSHS-VIVPRKGVMELVRLLDGGDTLLQLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITANNPEQEEA 302
>gi|156936081|ref|YP_001439997.1| DNA polymerase III subunit beta [Cronobacter sakazakii ATCC
BAA-894]
gi|389842878|ref|YP_006344962.1| DNA polymerase III subunit beta [Cronobacter sakazakii ES15]
gi|417790215|ref|ZP_12437793.1| DNA polymerase III subunit beta [Cronobacter sakazakii E899]
gi|429119377|ref|ZP_19180099.1| DNA polymerase III beta subunit [Cronobacter sakazakii 680]
gi|449310172|ref|YP_007442528.1| DNA polymerase III subunit beta [Cronobacter sakazakii SP291]
gi|156534335|gb|ABU79161.1| hypothetical protein ESA_03975 [Cronobacter sakazakii ATCC BAA-894]
gi|333955725|gb|EGL73450.1| DNA polymerase III subunit beta [Cronobacter sakazakii E899]
gi|387853354|gb|AFK01452.1| DNA polymerase III subunit beta [Cronobacter sakazakii ES15]
gi|426326158|emb|CCK10836.1| DNA polymerase III beta subunit [Cronobacter sakazakii 680]
gi|449100205|gb|AGE88239.1| DNA polymerase III subunit beta [Cronobacter sakazakii SP291]
Length = 366
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 175/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + ++ M + SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLDGDRMRVSSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + +++ V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEDLRTVATDGHRLAVCAMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + S +I+PRK V L R+L+ + P+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQPLPNHS-VIVPRKGVLELMRMLDGGDAPLRIQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|190572093|ref|YP_001969938.1| DNA polymerase III subunit beta [Stenotrophomonas maltophilia
K279a]
gi|254521676|ref|ZP_05133731.1| DNA polymerase III, beta subunit [Stenotrophomonas sp. SKA14]
gi|344205423|ref|YP_004790564.1| DNA polymerase III subunit beta [Stenotrophomonas maltophilia JV3]
gi|386716469|ref|YP_006182795.1| DNA polymerase III subunit beta [Stenotrophomonas maltophilia D457]
gi|408825479|ref|ZP_11210369.1| DNA polymerase III subunit beta [Pseudomonas geniculata N1]
gi|424670862|ref|ZP_18107884.1| DNA polymerase III, beta subunit [Stenotrophomonas maltophilia
Ab55555]
gi|190010015|emb|CAQ43620.1| putative DNA polymerase III beta subunit [Stenotrophomonas
maltophilia K279a]
gi|219719267|gb|EED37792.1| DNA polymerase III, beta subunit [Stenotrophomonas sp. SKA14]
gi|343776785|gb|AEM49338.1| DNA polymerase III, beta subunit [Stenotrophomonas maltophilia JV3]
gi|384076031|emb|CCH10605.1| DNA polymerase III beta subunit [Stenotrophomonas maltophilia D457]
gi|401069900|gb|EJP78420.1| DNA polymerase III, beta subunit [Stenotrophomonas maltophilia
Ab55555]
gi|456737217|gb|EMF61929.1| DNA polymerase III beta subunit [Stenotrophomonas maltophilia EPM1]
Length = 366
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 177/295 (60%), Gaps = 10/295 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A L PL V+++VE++ LP+L+N LV + ++S TD EV++ + AV
Sbjct: 6 QREAFLKPLAQVVNVVERRQTLPVLANFLVQVQNGQLSLTGTDLEVEMVSRIAVEDAQDG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ ARK +I+R+LP+ ++T+ + +++G+S+FTL TL + ++P S
Sbjct: 66 -ETTIPARKLFEIIRALPDGSRITVSQTGDKITVQAGRSRFTLATLPSNDFP-----SVD 119
Query: 128 DFEFT----LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
+ E T + + TLK ++ F++AQQD+RYYLNGLL + + V++DGHRL
Sbjct: 120 EVEATERVAIGEATLKELIERTAFAMAQQDVRYYLNGLLFDLRGDALRTVATDGHRLALC 179
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDG 243
+ ++ K S II+PRK V LQRLLE+ + +EL++ + +++ ++ SKLIDG
Sbjct: 180 ETDLAKPSGSKRQIIVPRKGVTELQRLLESGDREIELEVGRSHVRVKRDDVTFTSKLIDG 239
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
+F DY+ VI ++ V+R L SLQR +I+SN+K +G+R+ + P LKI+
Sbjct: 240 RFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGIRVEVSPGNLKISA 294
>gi|381395670|ref|ZP_09921365.1| DNA polymerase III subunit beta [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379328549|dbj|GAB56498.1| DNA polymerase III subunit beta [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 375
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 179/298 (60%), Gaps = 1/298 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ LHPLQ+V VE+++ LPIL N+L+ N + + TD EV++ T A+ +++
Sbjct: 7 REDFLHPLQLVAGAVERRHTLPILGNVLIRVNDDALWMTGTDLEVELITNVALVGNSTNG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
I V A+K +DI+R LP+ + +E+ IKSG+++++L TL A +YP + + + D
Sbjct: 67 KITVPAKKLLDIVRGLPDDCTILFSLEDNKALIKSGRARYSLSTLSADDYPNLE-DWEGD 125
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
EF +SQ LK ++ V FS+AQQD+RYYLNG+ L + I +V++DGHRL V
Sbjct: 126 SEFEISQHNLKQLIESVQFSMAQQDVRYYLNGMSLETSEHLIRSVATDGHRLAMSVVEYT 185
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ +IIPRK V + RL+++ + V++++ N I ++ ++ SKL+DG+F DY
Sbjct: 186 DEVLPTKQVIIPRKGVMEISRLIDDSQTKVKVRLGANHISMLSNSFVFTSKLVDGRFPDY 245
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
V+ + K +V R+ + +L R I++N+K KGVRL + LKIT + +E A
Sbjct: 246 NRVVPKETNKGLIVYRDIIKGALSRAMILTNEKFKGVRLSLSAGELKITADNPEQEHA 303
>gi|260595831|ref|YP_003208402.1| DNA polymerase III subunit beta [Cronobacter turicensis z3032]
gi|429102546|ref|ZP_19164520.1| DNA polymerase III beta subunit [Cronobacter turicensis 564]
gi|260215008|emb|CBA26670.1| DNA polymerase III subunit beta [Cronobacter turicensis z3032]
gi|426289195|emb|CCJ90633.1| DNA polymerase III beta subunit [Cronobacter turicensis 564]
Length = 366
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 175/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + ++ M + SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLDGDRMRVSSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + +++ V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEDLRTVATDGHRLAVCSMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + S +I+PRK V L R+L+ + P+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQPLPNHS-VIVPRKGVLELMRMLDGGDAPLRIQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|407794085|ref|ZP_11141114.1| DNA polymerase sliding clamp subunit [Idiomarina xiamenensis
10-D-4]
gi|407213509|gb|EKE83365.1| DNA polymerase sliding clamp subunit [Idiomarina xiamenensis
10-D-4]
Length = 366
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 173/298 (58%), Gaps = 2/298 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
++A L PLQ+V VE+++ LPIL+N+L+ ++I TD EV++ + G
Sbjct: 7 RDAFLKPLQVVSGAVERRHTLPILANVLIRAEQDQIRLTGTDLEVELVSTVTSGATEPG- 65
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
NI V A+K +DI+RSLP+ + + I+SG+S+FTL TL A ++P + + + D
Sbjct: 66 NITVPAKKLLDIIRSLPDGAPIEFSASEERATIRSGRSRFTLSTLPAADFPNIE-DWESD 124
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
+ Q LK ++ +FS+A QD+RYYLNG+L + V++DGHRL ++
Sbjct: 125 INLVIEQGVLKSVMERTHFSMANQDVRYYLNGMLFETDSALLRTVATDGHRLAMSSCSLG 184
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ +I+PRK V L RLL++ + L I NN I+I + SKL+DG+F DY
Sbjct: 185 QTNVPQRQVIVPRKGVMELLRLLDDSDAEATLAIGNNHIRIETGGLSFTSKLVDGRFPDY 244
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ V+ + +K L +R+ L ++ R SI+SN+K +GVRL + L IT ++ +E+A
Sbjct: 245 RRVLPSGGDKVVLADRDLLRQAFVRASILSNEKFRGVRLNLASGELCITANNPEQEQA 302
>gi|288939766|ref|YP_003442006.1| DNA polymerase III subunit beta [Allochromatium vinosum DSM 180]
gi|288895138|gb|ADC60974.1| DNA polymerase III, beta subunit [Allochromatium vinosum DSM 180]
Length = 366
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 181/299 (60%), Gaps = 10/299 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQI-TTYT 59
M+ V N E +L L VI +VE++ LPIL N+LV + +++ TD EV++ T++
Sbjct: 1 MEFVANRE--IVLPALNKVIGVVERRQTLPILGNLLVVARAGRVTLTGTDLEVEVKTSFE 58
Query: 60 A--VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKE 117
A G ++I ARK +DI R+L E ++ + ++++ + SG+ +FTL L A +
Sbjct: 59 AEIQQEGETTI----PARKLVDICRNLSEGAEIRLRVKDERCVVTSGRGRFTLGLLPAAD 114
Query: 118 YPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDG 177
+P M L + F+F + + LK +L+ F++AQQD+RYYLNGLLL +IAV++DG
Sbjct: 115 FPTMDLE-EGGFDFQIQESQLKRLLDKTAFAMAQQDVRYYLNGLLLELHATVLIAVATDG 173
Query: 178 HRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
HRL + +D + +I+P KTV L+R L + ++P+ +++S ++++ + +
Sbjct: 174 HRLAKFVTPLDLTLDTERQVIVPNKTVMELKRQLGSSDDPISIRLSERSLRVVVGAMTMT 233
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
SKL+DG++ +Y+ VI ++ V ++ L R+L R SI+SN+K +GVRL P LK+
Sbjct: 234 SKLVDGRYPEYERVIPGHSGRTATVEKDALKRALSRTSILSNEKYRGVRLSFDPGTLKL 292
>gi|407789820|ref|ZP_11136919.1| DNA polymerase III subunit beta [Gallaecimonas xiamenensis 3-C-1]
gi|407206027|gb|EKE75990.1| DNA polymerase III subunit beta [Gallaecimonas xiamenensis 3-C-1]
Length = 367
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/301 (36%), Positives = 185/301 (61%), Gaps = 5/301 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ V+N E+ +L PLQ V VE+++ LPIL+N+L+ N +S TD EV++
Sbjct: 1 MKFVINREQ--LLRPLQQVAGAVERRHTLPILANVLIEVNDGLLSLTGTDLEVELIGQLT 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + I V A+K +DI+R LP+ ++ + ++ + + ++SG+S+F+L TL A++YP
Sbjct: 59 LTDASHNGRITVPAKKLVDIIRGLPDGAEIKVDVDGERLLVRSGRSRFSLSTLAAEDYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + D EF +Q +L+ +++ +FS+A QD+RYYLNG+L + + VS+DGHRL
Sbjct: 119 IDA-WQSDIEFVTAQSSLRKLIDSTHFSMANQDVRYYLNGMLFETEHNKLRTVSTDGHRL 177
Query: 181 TY-YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
YQ+ ID +I+PRK V L RLL + + V+++I N I++I + SK
Sbjct: 178 AMAYQI-IDGVNLPEHQVIVPRKGVLELVRLLNHDDALVKVQIGANHIRVITDDFTFTSK 236
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
L+DG+F DY+ V+ + + +R L ++ R SI+SN+K +GVRL + + LKIT +
Sbjct: 237 LVDGRFPDYRRVLPRQADNRLQGDREVLRQAFARASILSNEKFRGVRLNLDGSELKITAN 296
Query: 300 S 300
+
Sbjct: 297 N 297
>gi|374334204|ref|YP_005090891.1| DNA polymerase III subunit beta [Oceanimonas sp. GK1]
gi|372983891|gb|AEY00141.1| DNA polymerase III subunit beta [Oceanimonas sp. GK1]
Length = 366
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 183/306 (59%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E A+L PLQ+V S + + LPIL+NIL+ + +S TDTEV++
Sbjct: 1 MQFTISRE--ALLRPLQLVSSALGGRPNLPILNNILLSVGDDALSMTGTDTEVEMVARVP 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ ++ V ARK +DI R LP+ ++T E + ++SG+S+F L TL A+++P
Sbjct: 59 LDGAVTAGRTTVPARKLLDICRGLPDGAELTFSQEGDRLLLRSGRSRFNLSTLPAEDFPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ S + EF ++Q LK ++ FS+A QD+RYYLNG+L ++ V++DGHRL
Sbjct: 119 IEEWSS-ELEFDINQLALKKLIEATQFSMAIQDVRYYLNGMLFETDGSSLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
Q +++ + +I+PRK V L +LLE+++ V L++ N ++ + SKL
Sbjct: 178 ATCQRELEQALPA-QQVIVPRKGVLELAKLLEHEDQDVRLQVGKNNLRAVTQGFIFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
+DG+F DY+ V+ + +K+ + +R L ++ R +I+SN+K +GVRL ++ LKIT ++
Sbjct: 237 VDGRFPDYRRVLPRESDKTLICDREGLKQAFTRAAILSNEKFRGVRLNLQDQTLKITANN 296
Query: 301 SNREKA 306
+E+A
Sbjct: 297 PEQEEA 302
>gi|406939829|gb|EKD72769.1| hypothetical protein ACD_45C00589G0006 [uncultured bacterium]
Length = 368
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 103/303 (33%), Positives = 183/303 (60%), Gaps = 2/303 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQM+ +VE++ LPIL+N+L+ ++ +TD E+++ + + +
Sbjct: 6 QRAALLKPLQMISGVVERRQTLPILANVLITVKDHRLYLTATDLEIELIGSAVLDDVSET 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I VAARK +DI R+LP+ +V + +E H+ ++SGKS+F L TL A+ +P + +
Sbjct: 66 GAITVAARKLLDICRALPDDAEVRLALEGDHVVLRSGKSRFLLTTLPAQNFPSIE-EVAF 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
EF++SQ LK +++ +YF++ QQD+R+YLNG L + + +++DGHRL + V+
Sbjct: 125 TIEFSMSQAKLKKMISKIYFAMGQQDVRHYLNGALFDIHQGTMKCIATDGHRLAFSSVSD 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLE-NKENPVELKISNNQIKIIFSNIEIISKLIDGKFL 246
+ ++ + +I+PRK+V L RLL+ N E V ++I N ++ SKLI+ ++
Sbjct: 185 IQANTAHAKVILPRKSVLELMRLLDANSEEAVTMRIGENHFRVNSQEFMFTSKLINAQYP 244
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
DY +I + + R L ++L R SI+SN+K +GVRL + + L+I ++ +E+A
Sbjct: 245 DYDKLIPRAIANTAVAGREALKQALARASILSNEKFRGVRLQLDRDTLRIVANNPEQEEA 304
Query: 307 SST 309
T
Sbjct: 305 EET 307
>gi|330827702|ref|YP_004390654.1| DNA polymerase III subunit beta [Aeromonas veronii B565]
gi|406675047|ref|ZP_11082238.1| DNA polymerase III, beta subunit [Aeromonas veronii AMC35]
gi|423202970|ref|ZP_17189548.1| DNA polymerase III, beta subunit [Aeromonas veronii AER39]
gi|423204656|ref|ZP_17191212.1| DNA polymerase III, beta subunit [Aeromonas veronii AMC34]
gi|423211626|ref|ZP_17198159.1| DNA polymerase III, beta subunit [Aeromonas veronii AER397]
gi|328802838|gb|AEB48037.1| DNA polymerase III, beta subunit [Aeromonas veronii B565]
gi|404613285|gb|EKB10318.1| DNA polymerase III, beta subunit [Aeromonas veronii AER397]
gi|404614226|gb|EKB11229.1| DNA polymerase III, beta subunit [Aeromonas veronii AER39]
gi|404625980|gb|EKB22791.1| DNA polymerase III, beta subunit [Aeromonas veronii AMC34]
gi|404628185|gb|EKB24971.1| DNA polymerase III, beta subunit [Aeromonas veronii AMC35]
Length = 367
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/306 (35%), Positives = 178/306 (58%), Gaps = 3/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQL ++ E A+L PLQ+V + + LPIL N+L+ ++ +S TD EV++
Sbjct: 1 MQLEISRE--ALLRPLQLVSGALGGRPTLPILGNVLLDVSNGLLSLTGTDLEVEMIGQVY 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + V ARK +DI R LPE ++ + E + + I+SG+S+F L TL A EYP
Sbjct: 59 LNGASEDGRTTVPARKLLDICRGLPEGAEIRLNTEGERLIIRSGRSRFNLSTLPATEYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + EF +SQ LK +++ FS+A QD+RYYLNG+L + + V++DGHRL
Sbjct: 119 IE-DWESVLEFDISQLELKKLIDATQFSMASQDVRYYLNGMLFESEGHGLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + + +I+PRK V L RLLE ++ PV L+I + ++ SKL
Sbjct: 178 ATCRREVVGESLPDHQVILPRKGVLELVRLLEAEDKPVRLQIGRSNLRAALDGFIFTSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
+DG+F D++ VI +K+ + R L ++ R +I+SN+K +GVRL ++ N L+IT ++
Sbjct: 238 VDGRFPDWRRVIPRNSDKALIAGREDLRQAFARAAILSNEKFRGVRLNLQENLLRITANN 297
Query: 301 SNREKA 306
+E+A
Sbjct: 298 PEQEEA 303
>gi|292490135|ref|YP_003533030.1| DNA polymerase III subunit beta [Erwinia amylovora CFBP1430]
gi|292901139|ref|YP_003540508.1| DNA polymerase III subunit beta [Erwinia amylovora ATCC 49946]
gi|428787124|ref|ZP_19004600.1| DNA polymerase III, beta-subunit [Erwinia amylovora ACW56400]
gi|291200987|emb|CBJ48126.1| DNA polymerase III, beta-subunit [Erwinia amylovora ATCC 49946]
gi|291555577|emb|CBA24171.1| DNA polymerase III, beta-subunit [Erwinia amylovora CFBP1430]
gi|312174328|emb|CBX82581.1| DNA polymerase III, beta-subunit [Erwinia amylovora ATCC BAA-2158]
gi|426274591|gb|EKV52333.1| DNA polymerase III, beta-subunit [Erwinia amylovora ACW56400]
Length = 366
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 180/307 (58%), Gaps = 3/307 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ A+ +
Sbjct: 6 ERERLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGTLLLTGTDLEMEMVARVALAQDHQP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVILEGERMLVRSGRSRFSLSTLPASDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ ++ ++++I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELVRLLDAGDSLLQVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKAS 307
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL I N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLDAGCDLLKQAFARAAILSNEKFRGVRLHISENQLKITANNPEQEEAE 303
Query: 308 ST-DLIY 313
D+ Y
Sbjct: 304 EMLDVTY 310
>gi|429098791|ref|ZP_19160897.1| DNA polymerase III beta subunit [Cronobacter dublinensis 582]
gi|426285131|emb|CCJ87010.1| DNA polymerase III beta subunit [Cronobacter dublinensis 582]
Length = 366
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + ++ M + SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLDGDRMRVSSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL+Q T+K ++ FS+A QD+RYYLNG+L + +++ V++DGHRL + +
Sbjct: 125 EVEFTLAQVTMKRLIEATQFSMAHQDVRYYLNGMLFETEGEDLRTVATDGHRLAVCSMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + S +I+PRK V L R+L+ + P+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQPLPNHS-VIVPRKGVLELMRMLDGGDAPLRIQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|378981436|ref|YP_005229577.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|419974150|ref|ZP_14489571.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419979449|ref|ZP_14494740.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419986255|ref|ZP_14501389.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419991933|ref|ZP_14506894.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419996970|ref|ZP_14511769.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420004144|ref|ZP_14518784.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420009891|ref|ZP_14524370.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420015075|ref|ZP_14529378.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420021412|ref|ZP_14535592.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420026934|ref|ZP_14540932.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420032744|ref|ZP_14546556.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420039434|ref|ZP_14553068.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420044439|ref|ZP_14557919.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420050365|ref|ZP_14563665.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420055753|ref|ZP_14568917.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420062051|ref|ZP_14575031.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420066341|ref|ZP_14579142.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420071401|ref|ZP_14584047.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420076691|ref|ZP_14589161.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420085381|ref|ZP_14597608.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|421918879|ref|ZP_16348391.1| DNA polymerase III beta subunit [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|428939005|ref|ZP_19012123.1| DNA polymerase III subunit beta [Klebsiella pneumoniae VA360]
gi|364520847|gb|AEW63975.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397346732|gb|EJJ39845.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397348581|gb|EJJ41680.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397348951|gb|EJJ42048.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397362319|gb|EJJ54970.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397363834|gb|EJJ56470.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397366960|gb|EJJ59574.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397377123|gb|EJJ69364.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397380033|gb|EJJ72219.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397386795|gb|EJJ78858.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397394320|gb|EJJ86051.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397396784|gb|EJJ88470.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397403124|gb|EJJ94709.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397411334|gb|EJK02593.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397411873|gb|EJK03118.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397421373|gb|EJK12393.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397429161|gb|EJK19881.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397430103|gb|EJK20804.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397440373|gb|EJK30782.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397447021|gb|EJK37225.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397449259|gb|EJK39402.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|410118832|emb|CCM91016.1| DNA polymerase III beta subunit [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|426304762|gb|EKV66899.1| DNA polymerase III subunit beta [Klebsiella pneumoniae VA360]
Length = 366
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 174/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ + +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVAEGALSLTGTDLEMEMVARVALVQPHEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELRTVATDGHRLAVCSMPL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + S +I+PRK V L R+L+ + P+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 EASLPNHS-VIVPRKGVIELMRMLDGGDIPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|336247899|ref|YP_004591609.1| DNA polymerase III subunit beta [Enterobacter aerogenes KCTC 2190]
gi|444353995|ref|YP_007390139.1| DNA polymerase III beta subunit (EC 2.7.7.7) [Enterobacter
aerogenes EA1509E]
gi|334733955|gb|AEG96330.1| DNA polymerase III subunit beta [Enterobacter aerogenes KCTC 2190]
gi|443904825|emb|CCG32599.1| DNA polymerase III beta subunit (EC 2.7.7.7) [Enterobacter
aerogenes EA1509E]
Length = 366
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 175/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ ++ + +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVSLIQPHEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELRTVATDGHRLAVCSMPL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
++ + S +I+PRK V L R+L+ + P+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 EESLPNHS-VIVPRKGVIELMRMLDGGDTPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLDAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|146309669|ref|YP_001174743.1| DNA polymerase III subunit beta [Enterobacter sp. 638]
gi|145316545|gb|ABP58692.1| DNA polymerase III, beta subunit [Enterobacter sp. 638]
Length = 366
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 175/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ + + +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLSQPHDA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRILVRSGRSRFSLSTLPAIDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S +I+PRK V L R+L+ ENP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GVTLPNHS-VIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N +KIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQIKITANNPEQEEA 302
>gi|253987485|ref|YP_003038841.1| DNA polymerase III subunit beta [Photorhabdus asymbiotica]
gi|253778935|emb|CAQ82095.1| DNA polymerase III subunit beta [Photorhabdus asymbiotica]
Length = 366
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ + +
Sbjct: 6 EREQLLKPLQQVSSPLGGRPTLPILGNLLLQVTESSLLLTGTDLEMEMMARVTLSLPHEE 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDIWRGLPDGAEISVELDGDRLLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EF+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMGI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQNLPSHS-VIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + + L ++ R +I+SN+K +GVRL N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSKNQLKITANNPEQEEA 302
>gi|389784088|ref|ZP_10195285.1| DNA polymerase III subunit beta [Rhodanobacter spathiphylli B39]
gi|388433845|gb|EIL90804.1| DNA polymerase III subunit beta [Rhodanobacter spathiphylli B39]
Length = 366
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/290 (37%), Positives = 174/290 (60%), Gaps = 4/290 (1%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ V+ +VE++ LP+L+N+LV K+S TD EV++ TA +
Sbjct: 6 QREALLKPLQQVVGVVERRQTLPVLANLLVKVGDGKLSLTGTDLEVEMVA-TADAEKLAD 64
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I + ARK DI+R+LP+ ++ + + + + +G+S+FTL TL A E+P T++
Sbjct: 65 GEITIPARKLFDIVRALPDGARIDLKLNGDRVALNAGRSRFTLTTLPASEFP--TVDQIE 122
Query: 128 DFE-FTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVN 186
E +L ++ L+ ++ F++A QD+RYYLNG+LL Q+ + V++DGHRL +
Sbjct: 123 LVEKVSLPEEVLRDLMERTAFAMANQDVRYYLNGMLLDLQEHTLRCVATDGHRLAMKETE 182
Query: 187 IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFL 246
+ S+ IIIPRK V L LLE + VEL+ N +++ + SKLIDG+F
Sbjct: 183 LQSSVSTRRQIIIPRKGVNELVGLLETGDGEVELEFGRNHLRVRRGEVVFTSKLIDGRFP 242
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
DY+ VI +K+ ++R L +LQR +I+SN+K +GVRL + P L+I
Sbjct: 243 DYEAVIPLGADKTATLDREVLRGALQRAAILSNEKYRGVRLELSPGKLRI 292
>gi|24371609|ref|NP_715651.1| DNA polymerase III beta subunit DnaN [Shewanella oneidensis MR-1]
gi|24345359|gb|AAN53096.1| DNA polymerase III beta subunit DnaN [Shewanella oneidensis MR-1]
Length = 366
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 180/299 (60%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
+++A+L PLQ+V VE+++ LPIL+N+LV + + TD EV++ +
Sbjct: 6 DRDALLKPLQLVCGAVERRHNLPILANLLVEVSGHSLKLTGTDLEVELVGQAVIHGDIEE 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V A+K +DI++SLPE ++ + ++ ++SG+S+F+L TL A+EYP + +
Sbjct: 66 GRTTVPAKKLLDIVKSLPEQSELKVEQQDNKWLLRSGRSRFSLATLPAEEYPNVEA-FQA 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q LK +++ FS+A QD+RYYLNGLL+ + + A+++DGHRL I
Sbjct: 125 EIEFTLKQGVLKSLIDATQFSMANQDVRYYLNGLLIETEGNMLRAIATDGHRLALSHRVI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + +I+PRK V + RLLE + + + I +N I+ S SKL+DG+F D
Sbjct: 185 EAQLPE-KQVIVPRKGVMEMARLLETDDLDIAISIGDNAIRATTSTTVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + +RN ++L R SI+SN+K +GVR+ ++ LKIT ++ +E+A
Sbjct: 244 YRRVLPKGGDKIVIASRNHFKQALTRASILSNEKFRGVRIQLEAGLLKITANNPEQEEA 302
>gi|254784275|ref|YP_003071703.1| DNA polymerase III subunit beta [Teredinibacter turnerae T7901]
gi|237687276|gb|ACR14540.1| DNA polymerase III, beta subunit [Teredinibacter turnerae T7901]
Length = 367
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 175/298 (58%), Gaps = 1/298 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ A++ PLQ+V +VE++ + +L+N+L+ +++S TD EV+I + +
Sbjct: 7 REALIKPLQLVAGVVERRQTMAVLANVLMEIEGDQLSLTGTDLEVEIIGRVQLESAPGNG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
I V A+KF+DI RSLP+ + ++++ +KSGKS+FTL TL A E+P + S D
Sbjct: 67 EITVPAKKFLDICRSLPDKSVIEFSLQDQKATVKSGKSRFTLSTLPANEFPAVEQGSN-D 125
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
+ QK +K +++ F++AQQD+RYYLNG+L + I V++DGHRL +D
Sbjct: 126 INISCEQKEIKRLIDRTAFAMAQQDVRYYLNGMLWELRPGEIRVVATDGHRLAVCSRPVD 185
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
S I+PRK V L RLL + E+ VE+ + ++ ++ + SKL+DGKF DY
Sbjct: 186 VDVSEIKQAILPRKGVIELARLLNDSEDGVEVSLGSSHMRASTAEYTFTSKLVDGKFPDY 245
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ V+ +K L NR+ L ++ R SI+SN+K +GVRL + L I ++ +E+A
Sbjct: 246 ERVLPKGGDKVVLGNRSDLKQAFARTSILSNEKYRGVRLELVAGSLTIIANNPEQEEA 303
>gi|387126056|ref|YP_006294661.1| DNA polymerase III subunit beta [Methylophaga sp. JAM1]
gi|386273118|gb|AFI83016.1| DNA polymerase III beta subunit [Methylophaga sp. JAM1]
Length = 367
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 113/306 (36%), Positives = 186/306 (60%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ V+ ++ I PLQ+V SIVE+++ LPILSNIL+ ++++ STD E+++
Sbjct: 1 MQFTVS--QDIIARPLQLVCSIVERRSTLPILSNILLRCRDQQLTMTSTDMELEMIATLP 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
V V+ARK +DI+R+LP ++ E+ +++GKS+F+L TL A ++P
Sbjct: 59 VAVEKEG-ETTVSARKLLDIVRALPANATISFQAEDNKSLVRAGKSRFSLATLPATDFPD 117
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + Y + T+ Q LK +L+ F++A QD+RYYLNGLLL ++ + AV++DGHRL
Sbjct: 118 -SEGANYLDQLTVPQSALKDLLDETSFAMASQDVRYYLNGLLLEREENTLRAVATDGHRL 176
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ +K + +I+PRK + L RLL + + V L IS Q+K+ ++ SKL
Sbjct: 177 ALGSIETAEKTNEKHSVIVPRKAILELGRLLGDVTDNVTLAISPQQLKVELPDMHFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F +Y+ V+ +K + R++L ++L R SI++NDK + V+L + N LK TV++
Sbjct: 237 IDGQFPNYERVLPVGGDKEVIAERDELKQALSRASILANDKHRSVKLNLSNNLLKATVTN 296
Query: 301 SNREKA 306
+E A
Sbjct: 297 QEQESA 302
>gi|375110098|ref|ZP_09756334.1| DNA polymerase sliding clamp subunit [Alishewanella jeotgali KCTC
22429]
gi|374569847|gb|EHR40994.1| DNA polymerase sliding clamp subunit [Alishewanella jeotgali KCTC
22429]
Length = 367
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/306 (37%), Positives = 176/306 (57%), Gaps = 3/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++N ++A+L PLQMV +E+++ LPILSN+L+ ++ +S TD EV++ T
Sbjct: 1 MQFLIN--RDALLKPLQMVSGAIERRHNLPILSNVLLDVTADTLSLTGTDLEVELVASTE 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
S I V A+K +DI RSLPE + + ++ ++ + SGKSKFTL TL A EYP
Sbjct: 59 QLQIQSPGRITVPAKKLLDICRSLPEQSDIQVAVQGENCVLTSGKSKFTLSTLSAAEYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + + E L ++ L+ +L FS+A QD+RYYLNGLL + AV++DGHRL
Sbjct: 119 LE-SWQGEVEINLGRQQLRKLLEDTAFSMANQDVRYYLNGLLFEVDNGTLTAVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + IIIPRK V + RLL N E V L + N I++ S+ SKL
Sbjct: 178 AMSTLALPAVSGQQKQIIIPRKGVLEIMRLLANDEQQVSLSLGQNHIRLTDSSFSFSSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ K +R L + R SI+SN+K +GVR + + ++I ++
Sbjct: 238 IDGRFPDYRRVLPRNSTKLVTAHRAVLKDACIRASILSNEKYRGVRFTLSNHEVQIVANN 297
Query: 301 SNREKA 306
E+A
Sbjct: 298 PEHEQA 303
>gi|429084021|ref|ZP_19147040.1| DNA polymerase III beta subunit [Cronobacter condimenti 1330]
gi|426546999|emb|CCJ73081.1| DNA polymerase III beta subunit [Cronobacter condimenti 1330]
Length = 366
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 175/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGVLSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + ++ M + SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLDGDRMRVSSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + +++ V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEDLRTVATDGHRLAVCAMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + S +I+PRK V L R+L+ + P+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQPLPNHS-VIVPRKGVLELMRMLDGGDAPLRIQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|260912770|ref|ZP_05919256.1| DNA-directed DNA polymerase III beta subunit [Pasteurella dagmatis
ATCC 43325]
gi|260633148|gb|EEX51313.1| DNA-directed DNA polymerase III beta subunit [Pasteurella dagmatis
ATCC 43325]
Length = 366
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 111/306 (36%), Positives = 184/306 (60%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ +V+ E +L PLQ V ++ + +P+L+N+L+ N + + TD EV+++T +A
Sbjct: 1 MQFIVSREN--LLKPLQQVCGVLSSRPNIPVLNNVLLQINGDCLVITGTDLEVELSTQSA 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + N + A+KF+DI RSLPE ++++ E +KSG+SKF L TL A+EYP
Sbjct: 59 LLSTDVKGNFTIPAKKFLDICRSLPENAEISVSFEEDRAIVKSGRSKFNLSTLPAEEYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+T + + + +FT+ Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHRL
Sbjct: 119 LT-DWQSEVDFTIEQSTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ +++ + S +I+PRK V L RLLEN + P L+I N ++I NI SKL
Sbjct: 178 AVCTIALEQDLQTHS-VILPRKGVLELVRLLENTDLPARLQIGTNNLRIELGNIIFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ + + + L ++ R +I+SN++ + VRL + N LKIT ++
Sbjct: 237 IDGRFPDYRRVLPRNATRILEADWDVLKQAFVRAAILSNERFRSVRLQLSENQLKITATN 296
Query: 301 SNREKA 306
+E A
Sbjct: 297 PEQEVA 302
>gi|429112323|ref|ZP_19174093.1| DNA polymerase III beta subunit [Cronobacter malonaticus 507]
gi|426313480|emb|CCK00206.1| DNA polymerase III beta subunit [Cronobacter malonaticus 507]
Length = 366
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 175/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + ++ M + SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLDGDRMRVSSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + +++ V++DGHRL + +
Sbjct: 125 EVEFTLPQVTMKRLIEATQFSMAHQDVRYYLNGMLFETEGEDLRTVATDGHRLAVCAMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + S +I+PRK V L R+L+ + P+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQPLPNHS-VIVPRKGVLELMRMLDGGDAPLRIQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|313199779|ref|YP_004038437.1| DNA polymerase III subunit beta [Methylovorus sp. MP688]
gi|312439095|gb|ADQ83201.1| DNA polymerase III, beta subunit [Methylovorus sp. MP688]
Length = 341
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 109/274 (39%), Positives = 176/274 (64%), Gaps = 3/274 (1%)
Query: 29 LPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLPETE 88
+PILSN+L+ EKI +TD E+QI+ G ++ ++A+K +DI RSLPE
Sbjct: 1 MPILSNLLLEAKDEKIVLTATDLEMQISLALQTPVGGE-LSTTISAKKLLDICRSLPENA 59
Query: 89 KVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF-TLSQKTLKCILNMVYF 147
++T+ + +K+GKS+F LQTL A +YP+MT + + T+ QK+LK + V F
Sbjct: 60 EITMATAESRIQVKTGKSRFNLQTLPAADYPVMTKATGTTYTVVTIDQKSLKRLFKQVEF 119
Query: 148 SIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTL 207
++AQQDIRYYLNGLL + V +DGHRL++ + + + ++I+PRKTV L
Sbjct: 120 AMAQQDIRYYLNGLLFEVNGNRLNVVGTDGHRLSFTSTELAQSYEK-QELILPRKTVIEL 178
Query: 208 QRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKL 267
+LL++ E V ++I++ Q+ F +I++ISK+IDGKF DY VI ++ SF V+R +
Sbjct: 179 IKLLDDSEEDVTIEIASGQVNFSFGDIKLISKVIDGKFPDYTRVIPVGHKNSFNVDRMTI 238
Query: 268 LRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
L ++QR SI+SN+K +G+R+V+ + L++ ++S
Sbjct: 239 LLAMQRASILSNEKYRGIRMVLGSDSLRLISTNS 272
>gi|422348882|ref|ZP_16429774.1| DNA polymerase III, beta subunit [Sutterella wadsworthensis
2_1_59BFAA]
gi|404658934|gb|EKB31796.1| DNA polymerase III, beta subunit [Sutterella wadsworthensis
2_1_59BFAA]
Length = 370
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 180/297 (60%), Gaps = 4/297 (1%)
Query: 12 ILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINII 71
+L P+++V IVEK+ LPILSNIL+ +N E + F +TD ++QI+T VG
Sbjct: 11 LLKPVKIVEGIVEKRQTLPILSNILIEQNGENVKFSATDLDIQISTEAPVGVAGVDTRFT 70
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V A K IL +LP T +V + ++ + I S KF LQTL A EYP++ S+++
Sbjct: 71 VGASKLASILTALPATNEVQFDLGDRGLTISSNNGKFQLQTLSADEYPVLK-ESQWETTL 129
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+ +TL+ +L M F++A QD+RYYLNG+L + K + V++D HRL +V++D +
Sbjct: 130 FIPSRTLRYLLTMTAFAMASQDVRYYLNGVLFVVEGKKLRTVATDTHRLACCEVDVDDE- 188
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
++ IIPRKTV L RLL + PV ++ ++ Q+ F NI +SKLI+G+F DYK V
Sbjct: 189 NTPMQAIIPRKTVRELIRLLPEDDTPVRVQFTDLQVCFSFGNITFMSKLIEGRFPDYKRV 248
Query: 252 ISNK--YEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ ++ + + R + +L+R+ I++N+K G+R ++ L+I ++S+ E+A
Sbjct: 249 LPSQDTNPNALELEREAISNALRRVGIMTNEKFHGIRWILNGEGLQIQSTNSDHEEA 305
>gi|334702448|ref|ZP_08518314.1| DNA polymerase III subunit beta [Aeromonas caviae Ae398]
Length = 367
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 178/306 (58%), Gaps = 3/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQL ++ E A+L PLQ+V + + LPIL N+L+ ++ +S TD EV++
Sbjct: 1 MQLEISRE--ALLRPLQLVSGALGGRPTLPILGNVLLDVSNGLLSLTGTDLEVEMIGQVY 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + V ARK +DI R LPE ++ + E + + I+SG+S+F L TL A EYP
Sbjct: 59 LNSDSQDGRTTVPARKLLDICRGLPEGAEIRLSTEGERLIIRSGRSRFNLSTLPATEYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + EF +SQ LK +++ FS+A QD+RYYLNG+L + + V++DGHRL
Sbjct: 119 IE-DWESVLEFDISQLELKKLIDATQFSMASQDVRYYLNGMLFESEGHGLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + + +I+PRK V L RLLE ++ PV L++ + ++ SKL
Sbjct: 178 ATCRREVVGESLPDHQVILPRKGVLELVRLLEAEDKPVRLQVGRSNLRAALDGFIFTSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
+DG+F D++ VI +K+ + R L ++ R +I+SN+K +GVRL ++ N L+IT ++
Sbjct: 238 VDGRFPDWRRVIPRGSDKALIAGREDLRQAFARAAILSNEKFRGVRLNLQENLLRITANN 297
Query: 301 SNREKA 306
+E+A
Sbjct: 298 PEQEEA 303
>gi|58579625|ref|YP_198641.1| DNA polymerase III subunit beta [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|84621659|ref|YP_449031.1| DNA polymerase III subunit beta [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188574272|ref|YP_001911201.1| DNA polymerase III subunit beta [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|58424219|gb|AAW73256.1| DNA polymerase III beta chain [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|84365599|dbj|BAE66757.1| DNA polymerase III beta chain [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188518724|gb|ACD56669.1| DNA polymerase III, beta subunit [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 366
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 176/298 (59%), Gaps = 16/298 (5%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA---VGYG 64
++ A L PL V+++VE++ LP+L+N+LV ++S TD EV++ T V G
Sbjct: 6 QREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMIARTMAEDVQDG 65
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLN 124
++I ARK DILR+LP+ +VTI + +++G+S+FTL TL A ++P
Sbjct: 66 ETTI----PARKLFDILRALPDGSRVTISQTGDKVTVQAGRSRFTLATLPANDFP----- 116
Query: 125 SKYDFEFT----LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
S + E T + + LK ++ F++AQQD+RYYLNGLL + + V++DGHRL
Sbjct: 117 SVDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLRCVATDGHRL 176
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
++ ++ + II+PRK V L RLLE + VEL++ + I++ ++ SKL
Sbjct: 177 ALCEMELENAGGAKRQIIVPRKGVTELLRLLEGADREVELEVGRSHIRVKRGDVTFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
IDG+F DY+ VI ++ V+R L SLQR +I+SN+K +GVR+ + P LKI+
Sbjct: 237 IDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISA 294
>gi|85711020|ref|ZP_01042081.1| DNA polymerase sliding clamp subunit [Idiomarina baltica OS145]
gi|85695424|gb|EAQ33361.1| DNA polymerase sliding clamp subunit [Idiomarina baltica OS145]
Length = 367
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 178/298 (59%), Gaps = 1/298 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
++A L PLQ+V VE+++ LPILSN+L+ + + TD EV++ + V
Sbjct: 7 RDAFLKPLQIVSGAVERRHTLPILSNLLLKVEGDTLRLTGTDLEVELISSVKVESSGGDG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
+ V A+K +DI+RSLP+ + + +++ + ++SG+SKF L +L A ++P + + +
Sbjct: 67 MVTVPAKKLLDIVRSLPDESPIELVGDDEGVRVRSGRSKFKLSSLSADDFPNIE-DWSSE 125
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
F SQ TLK ++ +FS+A QD+RYYLNG+L + +V++DGHRL +I+
Sbjct: 126 VNFITSQDTLKRLMEKTHFSMANQDVRYYLNGMLFETDANMLRSVATDGHRLAMSNCHIE 185
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ S +I+PRK V L RLL ++ V + I NN I++ ++I SKL+DG+F DY
Sbjct: 186 QPGLSQRQVIVPRKGVVELLRLLNEDDSEVAVAIGNNHIRVETADIVFTSKLVDGRFPDY 245
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ V+ +K +R+ L ++ R SI+SN+K +GVRL I L IT ++ +E+A
Sbjct: 246 RRVVPQGGDKQIFADRDLLRQAFGRASILSNEKFRGVRLNITAGELCITATNPEQEQA 303
>gi|254447344|ref|ZP_05060810.1| DNA polymerase III, beta subunit [gamma proteobacterium HTCC5015]
gi|198262687|gb|EDY86966.1| DNA polymerase III, beta subunit [gamma proteobacterium HTCC5015]
Length = 366
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 105/288 (36%), Positives = 169/288 (58%), Gaps = 2/288 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ ++L PLQ VI VE+KN +P L N+L+ +I +TD E+++ + +
Sbjct: 7 RESLLTPLQKVIGAVERKNTMPALGNVLIKAQGGEIQMTATDLEIELLAKSVLPVDQEG- 65
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
+I + ARK +DI ++LP+ +T+ ++ + + SG+S+F L TL A ++P +
Sbjct: 66 DITLPARKLLDICKNLPDGADITLQVDAERATLSSGRSRFKLSTLPAADFPQLEAVQGV- 124
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
+FTL Q TL+ +++ F++AQQD+RYYLNGL+L + AV++DGHRL + +
Sbjct: 125 TQFTLPQSTLRKVIDKTSFAMAQQDVRYYLNGLMLELDGSTVRAVATDGHRLALCETDAG 184
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+IIPRK V L RLL+++E E+ +SNN I++ N+ SKLIDG+F DY
Sbjct: 185 LDIGDKKQVIIPRKGVQELSRLLDDEERDAEVSLSNNHIQVDLGNLRFTSKLIDGRFPDY 244
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
+ V+ +K ++ L +L R S++SN+K KGVRLV L I
Sbjct: 245 QRVMPANCDKVVSADKQDLKLALTRTSVLSNEKYKGVRLVADNGALTI 292
>gi|15988190|pdb|1JQL|A Chain A, Mechanism Of Processivity Clamp Opening By The Delta
Subunit Wrench Of The Clamp Loader Complex Of E. Coli
Dna Polymerase Iii: Structure Of Beta-Delta (1-140)
gi|16974833|pdb|1JQJ|A Chain A, Mechanism Of Processivity Clamp Opening By The Delta
Subunit Wrench Of The Clamp Loader Complex Of E. Coli
Dna Polymerase Iii: Structure Of The Beta-Delta Complex
gi|16974834|pdb|1JQJ|B Chain B, Mechanism Of Processivity Clamp Opening By The Delta
Subunit Wrench Of The Clamp Loader Complex Of E. Coli
Dna Polymerase Iii: Structure Of The Beta-Delta Complex
Length = 366
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 174/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ +NP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R + SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDLLKQAFARAAAASNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|389797483|ref|ZP_10200524.1| DNA polymerase III subunit beta [Rhodanobacter sp. 116-2]
gi|388447115|gb|EIM03128.1| DNA polymerase III subunit beta [Rhodanobacter sp. 116-2]
Length = 366
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 108/291 (37%), Positives = 177/291 (60%), Gaps = 6/291 (2%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQ-ITTYTAVGYGNS 66
++ A+L PLQ V+ +VE++ LP+L+N+LV + K+S TD EV+ + T A +
Sbjct: 6 QREALLKPLQQVVGVVERRQTLPVLANLLVRVGNGKLSLTGTDLEVEMVATTEAEKLVDG 65
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSK 126
+ I ARK DI+R+LP+ ++ + + + + +G+S+FTL TL A E+P T++
Sbjct: 66 EVTI--PARKLFDIVRALPDGARIELKLNGDRVALSAGRSRFTLTTLPASEFP--TIDEI 121
Query: 127 YDFE-FTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
E +L ++ L+ ++ F++A QD+RYYLNG+LL Q+ + V++DGHRL +
Sbjct: 122 ELVEKVSLPEEALRDLMERTAFAMANQDVRYYLNGMLLDLQEHTLRCVATDGHRLAMKET 181
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKF 245
+ S+ IIIPRK V L LLE+ + VEL+ N +++ ++ SKLIDG+F
Sbjct: 182 ELQSSVSARRQIIIPRKGVNELIGLLESGDGQVELEFGRNHLRVRRGDVVFTSKLIDGRF 241
Query: 246 LDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
DY+ VI +K+ ++R L +LQR +I+SN+K +GVRL + P L+I
Sbjct: 242 PDYEAVIPLGADKTATLDREVLRGALQRAAILSNEKYRGVRLELSPGKLRI 292
>gi|400404980|ref|YP_006587839.1| DNA polymerase III subunit beta [secondary endosymbiont of
Ctenarytaina eucalypti]
gi|400363343|gb|AFP84411.1| DNA polymerase III, beta subunit [secondary endosymbiont of
Ctenarytaina eucalypti]
Length = 366
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 175/289 (60%), Gaps = 2/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S++ + +LPIL+N+L+ + + STD E+++ + A+ ++
Sbjct: 6 ERERLLKPLQQVTSLLGGRPMLPILANLLLQVDKGCLLLTSTDLEMEMVSRVALHSAHAC 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE +T+ +E + M I+SG+S+++L TL A ++P + +
Sbjct: 66 GTTTVPARKFFDICRGLPEGAAITVTLEGERMLIRSGRSRYSLSTLAASDFPNLD-DWDS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTLSQ LK ++ FS+A QD+RYYLNG+L + + + V++DGHRL +++
Sbjct: 125 EVEFTLSQSILKRLIESTQFSMAHQDVRYYLNGMLFETKGEELCTVATDGHRLALCAMSV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L++ NPV L+I N I+ + SKL+DG F D
Sbjct: 185 GEAMPSHS-VIVPRKGVMELVRMLDSCVNPVTLQIGRNNIRASVGDYIFTSKLVDGCFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ + +K + L ++ R +I+SN+K +GVRL + N LKI
Sbjct: 244 YRRVLPSNPDKILEAECDVLKQAFARAAILSNEKFRGVRLYLSTNQLKI 292
>gi|407801747|ref|ZP_11148590.1| DNA polymerase III subunit beta [Alcanivorax sp. W11-5]
gi|407024064|gb|EKE35808.1| DNA polymerase III subunit beta [Alcanivorax sp. W11-5]
Length = 366
Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 175/296 (59%), Gaps = 4/296 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ +N E +L PLQ V +VE++ LP+LSN+L+ +++S TD E+++
Sbjct: 1 MKFTINRE--LLLKPLQQVAGVVERRQTLPVLSNVLIEVTDQQLSVTGTDLELELVARLP 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ S V ARK +DI +SLP + + ++ + + ++SG+S+FTL TL A E+P
Sbjct: 59 LEGEVQSGETTVPARKLLDICKSLPAEADIRLEVDGERLVVRSGRSRFTLSTLPASEFPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ ++ L+ +++ FS+AQQD+RYYLNGLLL +K + AV++DGHRL
Sbjct: 119 LEEEVGGAL-LEVAPDQLRRLIDSTAFSMAQQDVRYYLNGLLLELRKGRLRAVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ S + +I+PRK V L RLL + PV+L + N +++I ++ SKL
Sbjct: 178 AMSDAEV-TGISDDAQVIMPRKGVMELARLLGDSTQPVKLTVGKNHVRVIAGDVTFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
+DGKF +Y+ VI + ++ + +R L ++L R++I+SN+K +GVR+ + L++
Sbjct: 237 VDGKFPEYERVIPREGQRRVMADRETLRQALGRVAILSNEKYRGVRIQLSDASLRV 292
>gi|421496356|ref|ZP_15943588.1| DNA polymerase III subunit beta [Aeromonas media WS]
gi|407184620|gb|EKE58445.1| DNA polymerase III subunit beta [Aeromonas media WS]
Length = 367
Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 177/306 (57%), Gaps = 3/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQL ++ E A+L PLQ+V + + LPIL N+L+ ++ +S TD EV++
Sbjct: 1 MQLEISRE--ALLRPLQLVSGALGGRPTLPILGNVLLDVSNGLLSLTGTDLEVEMIGQVY 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + V ARK +DI R LPE + + E + + I+SG+S+F L TL A EYP
Sbjct: 59 LSSDSQDGRTTVPARKLLDICRGLPEGADIRLNTEGERLIIRSGRSRFNLSTLPATEYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + EF +SQ LK +++ FS+A QD+RYYLNG+L + + V++DGHRL
Sbjct: 119 IE-DWESVLEFDISQLELKKLIDATQFSMASQDVRYYLNGMLFESEGHGLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + + +I+PRK V L RLLE ++ PV L++ + ++ SKL
Sbjct: 178 ATCRREVVGESLPDHQVILPRKGVLELVRLLEAEDKPVRLQVGRSNLRAALDGFIFTSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
+DG+F D++ VI +K+ + R L ++ R +I+SN+K +GVRL ++ N L+IT ++
Sbjct: 238 VDGRFPDWRRVIPRGSDKALIAGREDLRQAFARAAILSNEKFRGVRLNLQENLLRITANN 297
Query: 301 SNREKA 306
+E+A
Sbjct: 298 PEQEEA 303
>gi|188535561|ref|YP_001909358.1| DNA polymerase III subunit beta [Erwinia tasmaniensis Et1/99]
gi|188030603|emb|CAO98498.1| DNA polymerase III subunit beta [Erwinia tasmaniensis Et1/99]
Length = 366
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 177/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ A+ +
Sbjct: 6 ERELLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGTLLLTGTDLEMEMVARVALTQDHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVILEGERMLVRSGRSRFSLSTLPASDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGDELRTVATDGHRLAVCSMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ ++ ++++I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELVRLLDGGDSLLQVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLDASCDLLKQAFSRAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|192362292|ref|YP_001980526.1| DNA polymerase III subunit beta [Cellvibrio japonicus Ueda107]
gi|190688457|gb|ACE86135.1| DNA polymerase III, beta subunit [Cellvibrio japonicus Ueda107]
Length = 367
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 176/298 (59%), Gaps = 1/298 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV+I + S
Sbjct: 7 REALLKPLQLVAGVVERRQTLPVLSNVLIQLEGDQLSLTGTDLEVEIIGRLTLEQAGQSG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
I V ARK +DI RSLP+ + ++E + +KSG+S+FTL TL A ++P + ++ +
Sbjct: 67 EITVPARKLVDICRSLPDGSTIEFFLEENRILVKSGRSRFTLSTLPASDFPNVE-DAPGN 125
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
F+ +Q +K ++ F++AQQD+RYYLNG+L ++ ++ V++DGHR+ I
Sbjct: 126 LRFSCAQAEVKRLIERTAFAMAQQDVRYYLNGMLWEVRQDHLRVVATDGHRMAMCTRAIA 185
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
I+PRK V L RLL++ VE+ +S N I++ + SKL+DGKF +Y
Sbjct: 186 VNTDDVVQAILPRKGVLELSRLLDDSSAQVEVVLSANHIRVTSVDYTFTSKLVDGKFPEY 245
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ V+ K + +R +L ++ R +I+SN+K +GVRL++ L I ++ +E+A
Sbjct: 246 ERVLPRGGNKVVIGSRLELKQAFARTAILSNEKYRGVRLLLSNGVLTIVANNPEQEEA 303
>gi|329894831|ref|ZP_08270631.1| DNA polymerase III beta subunit [gamma proteobacterium IMCC3088]
gi|328922725|gb|EGG30059.1| DNA polymerase III beta subunit [gamma proteobacterium IMCC3088]
Length = 375
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 182/307 (59%), Gaps = 10/307 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNS- 66
E+ A++ PL +V +VE++ LPIL+N+LV ++S + TD EV++T + +S
Sbjct: 6 EREALVKPLSLVAGVVERRQTLPILANVLVNVEGSQLSLVGTDLEVELTGRVTLEDSDSV 65
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIM-TLNS 125
S ++ V RK DI +SLP+ + + + + +KSG+S+F+L TL A E+P++ +LN
Sbjct: 66 SGSVTVPGRKLFDICKSLPDGSVIELAQDGAKLVVKSGRSRFSLATLPATEFPLVDSLNV 125
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
+ T+ Q+ LK ++ F++AQQD+RYYLNG+L V++DGHRL +
Sbjct: 126 RG--SMTVDQQALKALIEQTGFAMAQQDVRYYLNGMLWELNANQFRVVATDGHRLATSHI 183
Query: 186 NIDKKF------SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
+ + + II+PRK V L RLL+ + P E+ + +N +K+ ++ ISK
Sbjct: 184 VLSEGVVQGLSGPDATQIILPRKGVLELSRLLQPGDAPAEVALGDNHLKVETASFTFISK 243
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
L+DGKF DY+ V+ K+ + R+ L +L R +I+SN+K +G+RL + + L++ +
Sbjct: 244 LVDGKFPDYQRVLPKNSTKTVVGERDVLKSALSRAAILSNEKYRGIRLHLSSDQLQVVAN 303
Query: 300 SSNREKA 306
+ +E+A
Sbjct: 304 NPEQEEA 310
>gi|308047724|ref|YP_003911290.1| DNA polymerase III subunit beta [Ferrimonas balearica DSM 9799]
gi|307629914|gb|ADN74216.1| DNA polymerase III, beta subunit [Ferrimonas balearica DSM 9799]
Length = 366
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 114/314 (36%), Positives = 183/314 (58%), Gaps = 5/314 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ V+N E +L PLQ+V VE+++ LPIL+N+L+ + + TD EV++
Sbjct: 1 MQFVINRE--TLLKPLQLVSGAVERRHNLPILANVLLEVSGNLLKVTGTDLEVELIGQVE 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
V V ARKF+DI +SLP+ ++ I ++ + IKSG+S+F+L TL A E+P
Sbjct: 59 VEGDIQPGRTTVPARKFLDICKSLPDQAELRIEQQDNRLLIKSGRSRFSLSTLPADEFPE 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + K + +FTL Q LK ++ FS+A QD+RYYLNG+L + + V++DGHRL
Sbjct: 119 IG-DWKGELQFTLPQGVLKSLIEATQFSMAHQDVRYYLNGMLFETEGNVLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
I+ +I+PRK V L RL E+++ + L I + I+ + + SKL
Sbjct: 178 AVSHRVIEASLPE-KQVIVPRKGVIELSRLFEDEQAEITLCIGESSIRAVTRDAIFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
+DG+F DY+ V+ +K + R+ L ++ R SI+SN+K +GVRL+++ + L IT ++
Sbjct: 237 VDGRFPDYRRVLPKDGDKVVVAERDALRQAFARASILSNEKFRGVRLLLENDRLTITANN 296
Query: 301 SNREKASST-DLIY 313
+E+A DL Y
Sbjct: 297 PEQEEAEEVLDLAY 310
>gi|352080695|ref|ZP_08951634.1| DNA polymerase III, beta subunit [Rhodanobacter sp. 2APBS1]
gi|351683976|gb|EHA67052.1| DNA polymerase III, beta subunit [Rhodanobacter sp. 2APBS1]
Length = 366
Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 108/291 (37%), Positives = 177/291 (60%), Gaps = 6/291 (2%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQ-ITTYTAVGYGNS 66
++ A+L PLQ V+ +VE++ LP+L+N+LV + K+S TD EV+ + T A +
Sbjct: 6 QREALLKPLQQVVGVVERRQTLPVLANLLVRVGNGKLSLTGTDLEVEMVATTEAEKLVDG 65
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSK 126
+ I ARK DI+R+LP+ ++ + + + + +G+S+FTL TL A E+P T++
Sbjct: 66 EVTI--PARKLFDIVRALPDGARIELKLNGDRVALNAGRSRFTLTTLPASEFP--TIDEI 121
Query: 127 YDFE-FTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
E +L ++ L+ ++ F++A QD+RYYLNG+LL Q+ + V++DGHRL +
Sbjct: 122 ELVEKVSLPEEALRDLMERTAFAMANQDVRYYLNGMLLDLQEHTLRCVATDGHRLAMKET 181
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKF 245
+ S+ IIIPRK V L LLE+ + VEL+ N +++ ++ SKLIDG+F
Sbjct: 182 ELQSSVSARRQIIIPRKGVNELIGLLESGDGQVELEFGRNHLRVRRGDVVFTSKLIDGRF 241
Query: 246 LDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
DY+ VI +K+ ++R L +LQR +I+SN+K +GVRL + P L+I
Sbjct: 242 PDYEAVIPLGADKTATLDREVLRGALQRAAILSNEKYRGVRLELSPGKLRI 292
>gi|392952213|ref|ZP_10317768.1| DNA polymerase III subunit beta [Hydrocarboniphaga effusa AP103]
gi|391861175|gb|EIT71703.1| DNA polymerase III subunit beta [Hydrocarboniphaga effusa AP103]
Length = 363
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 107/291 (36%), Positives = 172/291 (59%), Gaps = 7/291 (2%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAV---GYGN 65
+N +L LQ VI +VE++ LP+L+N L+ + + ++ + TD E+++ V G
Sbjct: 3 RNELLGALQSVIGVVERRQTLPVLANFLLEVSEDVLTVIGTDLEMELVGRARVQNLAPGK 62
Query: 66 SSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
++ V ARK DI R LPE +V++ + +KSGKS+F+L TL A E+P M +
Sbjct: 63 TT----VPARKLFDICRGLPEGAEVSLEQSGDKVLLKSGKSRFSLSTLKADEFPSMGSAT 118
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
E L + LK +L F++AQQD+RYYLNGLLL + AV++DGHRL + ++
Sbjct: 119 AAASEVRLKRVELKQLLERTQFAMAQQDVRYYLNGLLLDVAPTRLRAVATDGHRLAFSEL 178
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKF 245
+ ++ +I+PRK++ L RLL+ E V L +S Q I + + +K IDG+F
Sbjct: 179 KRETGVTTAQQVILPRKSIIELSRLLDATEEEVVLVLSPGQAVIDIDTVRLTTKTIDGRF 238
Query: 246 LDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
DY+ VI +K L +R +L ++L R +I+SN+K +GVRL+++ LK+
Sbjct: 239 PDYERVIPENGDKHVLADREQLRKALARTAILSNEKFRGVRLLLEEGTLKL 289
>gi|290473096|ref|YP_003465957.1| DNA polymerase III subunit beta [Xenorhabdus bovienii SS-2004]
gi|289172390|emb|CBJ79157.1| DNA polymerase III, beta-subunit [Xenorhabdus bovienii SS-2004]
Length = 366
Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 180/299 (60%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ A+ +
Sbjct: 6 EREQLLKPLQQVSSPLGGRPTLPILGNLLLQVTESSLLLTGTDLEMEMKARVALTQPHEQ 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTIPARKFFDIWRGLPDGAEISVELDGDRILVRSGRSRFSLSTLPASDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EF+L Q TLK ++ FS+A QD+RYYLNG+L +++ + V++DGHRL +NI
Sbjct: 125 EVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEEEELRTVATDGHRLAVCSMNI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ ++ ++L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQNLPSHS-VIVPRKGVIELMRLLDGGDSLLQLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEANCDVLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEA 302
>gi|359781153|ref|ZP_09284378.1| DNA polymerase III subunit beta [Pseudomonas psychrotolerans L19]
gi|359371213|gb|EHK71779.1| DNA polymerase III subunit beta [Pseudomonas psychrotolerans L19]
Length = 367
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 166/289 (57%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ + +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQRLSLTGTDLEVELVGRVDLEEAAEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SL + I E + + I++G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLQPDALIDIRTEEQKLLIRAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+F++ Q L+ ++ F++AQQD+RYYLNG+LL + AV++DGHRL +
Sbjct: 125 SLKFSIPQGRLRRLIERTGFAMAQQDVRYYLNGMLLEASTGRLRAVATDGHRLAMCMLEA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D + +I+PRK + L RLL E PV + + + I+ + SKL+DGKF D
Sbjct: 185 DVDQAEKHQVIVPRKGILELSRLLTEPEEPVNVVLGQHHIRATTGDFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L R L + R +I+SN+K +G+RL ++ ++KI
Sbjct: 245 YERVLPRHGDKLVLGERQHLREAFSRTAILSNEKYRGIRLQLENGFMKI 293
>gi|254282661|ref|ZP_04957629.1| DNA polymerase III, beta subunit [gamma proteobacterium NOR51-B]
gi|219678864|gb|EED35213.1| DNA polymerase III, beta subunit [gamma proteobacterium NOR51-B]
Length = 365
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 176/298 (59%), Gaps = 3/298 (1%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
++A++ PL +V +VE++ LPILSN+L+ ++ TD EV++ + +
Sbjct: 7 RDALIKPLNLVAGVVERRQTLPILSNVLLRVEGNRLELTGTDLEVELLGRVDLAEPGEAG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
I V ARK +DI +SLPE ++ +++ +K+G+S+FTL TL A ++P + +S+ +
Sbjct: 67 EITVPARKLVDICKSLPEGSEINFSVDSGKATVKAGRSRFTLSTLPAADFPTVE-SSEGE 125
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
+L Q LK +++ F++AQQD+RYYLNG+LL + V++DGHRL
Sbjct: 126 VSVSLPQSVLKRLIDRTGFAMAQQDVRYYLNGMLLEILGGRLRMVATDGHRLALCTAQEP 185
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ S +IIPRK V L RLLE + PV L I +N ++ SKL+DGKF +Y
Sbjct: 186 VEAGDAS-VIIPRKGVLELARLLEG-DGPVTLVIGSNHVRAANLQFTFTSKLVDGKFPEY 243
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ V+ +KS + +R L ++ R +I+SN+K +GVRL I + L+IT ++ +E+A
Sbjct: 244 ERVLPKSPDKSVVGDRQTLRQAFTRTAILSNEKYRGVRLKIADDTLEITANNPEQEQA 301
>gi|372267024|ref|ZP_09503072.1| DNA polymerase III subunit beta [Alteromonas sp. S89]
Length = 369
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 105/313 (33%), Positives = 182/313 (58%), Gaps = 12/313 (3%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGY-GNSS 67
++A++ PLQ+V +VEK+ LP+L+N+L+ +++S TD EV+I +
Sbjct: 7 RDALVKPLQLVAGVVEKRQTLPVLANVLMQLQGQELSLTGTDLEVEIVGRLQLEQPAEME 66
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ V ARK +DI RSLP+ ++ + + + ++SG+S++ L TL A ++P +
Sbjct: 67 GEVTVPARKLLDICRSLPDGAELKFERDGERLVLRSGRSRYQLSTLPASDFPNQE-ETTA 125
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQ--- 184
F++SQ+ ++ +++ F++AQQD+RYYLNGLLL + + + AV++DGHRL
Sbjct: 126 QSRFSISQREIRRLIDATGFAMAQQDVRYYLNGLLLECRPQQLRAVATDGHRLALCDRDA 185
Query: 185 --VNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+N+D + I+PRK V L RLLE+ + E+ + NN I+++ SKL+D
Sbjct: 186 PGLNVDAPIQA----IVPRKGVLELARLLEDSDASAEVVLGNNHIRVVCGQFTFTSKLVD 241
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSN 302
GKF DY+ V+ +R L ++ QR +I+SN+K +GVRL + L+I ++
Sbjct: 242 GKFPDYERVLPRGTGNEVFADRLALRQAFQRAAILSNEKYRGVRLQLSEGLLQIVANNPE 301
Query: 303 REKASSTDLI-YH 314
+E+A ++ YH
Sbjct: 302 QEEAEEQLMVDYH 314
>gi|411011448|ref|ZP_11387777.1| DNA polymerase III subunit beta [Aeromonas aquariorum AAK1]
gi|423198924|ref|ZP_17185507.1| DNA polymerase III, beta subunit [Aeromonas hydrophila SSU]
gi|404629772|gb|EKB26500.1| DNA polymerase III, beta subunit [Aeromonas hydrophila SSU]
Length = 367
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 176/306 (57%), Gaps = 3/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQL ++ E A+L PLQ+V + + LPIL N+L+ ++ +S TD EV++
Sbjct: 1 MQLEISRE--ALLRPLQLVSGALGGRPTLPILGNVLLDVSNGLLSLTGTDLEVEMIGQVY 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + V ARK +DI R LPE + + E + + I+SG+S+F L TL A EYP
Sbjct: 59 LNSDSQDGRTTVPARKLLDICRGLPEGADIRLNTEGERLIIRSGRSRFNLSTLPATEYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + EF + Q LK +++ FS+A QD+RYYLNG+L + + V++DGHRL
Sbjct: 119 IE-DWESVLEFDIGQLELKKLIDATQFSMASQDVRYYLNGMLFESEGHGLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + + +I+PRK V L RLLE ++ PV L+I + ++ SKL
Sbjct: 178 ATCRREVVSESLPDHQVILPRKGVLELVRLLEAEDKPVRLQIGRSNLRAALDGFIFTSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
+DG+F D++ VI +K+ + R L ++ R +I+SN+K +GVRL ++ N L+IT ++
Sbjct: 238 VDGRFPDWRRVIPRNSDKALIAGREDLRQAFARAAILSNEKFRGVRLNLQENLLRITANN 297
Query: 301 SNREKA 306
+E+A
Sbjct: 298 PEQEEA 303
>gi|212554410|gb|ACJ26864.1| DNA polymerase III, beta subunit [Shewanella piezotolerans WP3]
Length = 366
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 182/299 (60%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
+++A+L PLQ+V VE+++ LPIL+N+LV ++ + TD EV++ +
Sbjct: 6 DRDALLKPLQLVSGAVERRHNLPILANLLVEVSAHSLKLTGTDLEVELVGEVLLEGEVFE 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V A+KF+DI++SLP+ ++ I + + ++SG+S+FTL TL A+EYP + +
Sbjct: 66 GRTTVPAKKFLDIVKSLPDQVELKIEQQENRLLLRSGRSRFTLATLPAEEYPNVE-AFEA 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K +++ FS+A QD+RYYLNGLLL + + A+++DGHRL I
Sbjct: 125 ELEFTLKQGTMKSLIDATQFSMANQDVRYYLNGLLLETEGNVLRAIATDGHRLALSHRMI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ +I+PRK V L R E E V + I +N I+ + SKL+DG+F D
Sbjct: 185 EASLPE-KQVIVPRKGVLELMRSFEGDELDVTIAIGDNAIRATTATAVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + +R +L ++L R SI+SN+K +GVR+ ++ N +KIT ++ +E+A
Sbjct: 244 YRRVLPKGGDKIVIASRQQLKQALLRASILSNEKFRGVRVQLENNLIKITANNPEQEEA 302
>gi|94502202|ref|ZP_01308697.1| DNA polymerase III subunit beta [Bermanella marisrubri]
gi|94425663|gb|EAT10676.1| DNA polymerase III subunit beta [Oceanobacter sp. RED65]
Length = 367
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 105/309 (33%), Positives = 186/309 (60%), Gaps = 3/309 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L + E A+L PLQ+V +VE++ LP+LSN+L+ +++S TD E+++
Sbjct: 1 MKLTITRE--ALLKPLQLVAGVVERRQTLPVLSNVLLEVKGDQLSLTGTDLELELIGSAT 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ I V A+K +DI +SLP+ + I ++ + +++G+SKF L +L A E+P
Sbjct: 59 LLEPGVDGAITVPAKKLMDICKSLPDQSTIEISQDDHKVQLQTGRSKFVLSSLPANEFPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + + + Q L+ I++ F++AQQD+RYYLNG+L+ + + AV++DGHRL
Sbjct: 119 ID-DIEAQAQVMVPQTQLRRIIDRTAFAMAQQDVRYYLNGMLIEVKPDELRAVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
V ++ + +I+PRK V L +LL + E+ VEL +SNN ++ + SKL
Sbjct: 178 ATCGVPVELDIADRMQVIVPRKAVLELAKLLMDPESSVELSLSNNHVRAKVGDYTFTSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
+DGKF DY+ VI K+ + +R L + QR +I+SN+K +GVRL+++ + L++ ++
Sbjct: 238 VDGKFPDYERVIPRNGNKTLIADRQALRQVFQRTAILSNEKYRGVRLLLENDNLQVVANN 297
Query: 301 SNREKASST 309
+E+A +
Sbjct: 298 PEQEQAEES 306
>gi|145297126|ref|YP_001139967.1| DNA polymerase III beta-subunit [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418362522|ref|ZP_12963152.1| DNA polymerase III subunit beta [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142849898|gb|ABO88219.1| DNA polymerase III beta-subunit [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356686215|gb|EHI50822.1| DNA polymerase III subunit beta [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 367
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 176/306 (57%), Gaps = 3/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQL ++ E A+L PLQ+V + + LPIL N+L+ + +S TD EV++
Sbjct: 1 MQLEISRE--ALLRPLQLVSGALGGRPTLPILGNVLLDVSQGLLSLTGTDLEVEMIGQVY 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + V ARK +DI R LPE + + E + + I+SG+S+F L TL A EYP
Sbjct: 59 LNNESQDGRTTVPARKLLDICRGLPEGADIRLNTEGERLIIRSGRSRFNLSTLPASEYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + EF + Q LK +++ FS+A QD+RYYLNG+L + + V++DGHRL
Sbjct: 119 IE-DWESVLEFDIGQLELKKLIDATQFSMASQDVRYYLNGMLFESEGHGLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + ++ +I+PRK V L RLLE ++ PV L+I + ++ SKL
Sbjct: 178 ATCRREVVEESLPDHQVILPRKGVLELVRLLEAEDKPVRLQIGRSNLRAALDGFIFTSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
+DG+F D++ VI +K+ + R L ++ R +I+SN+K +GVRL ++ N L+IT ++
Sbjct: 238 VDGRFPDWRRVIPRNSDKALIAGREDLRQAFARAAILSNEKFRGVRLNLQENLLRITANN 297
Query: 301 SNREKA 306
+E+A
Sbjct: 298 PEQEEA 303
>gi|358449456|ref|ZP_09159940.1| DNA polymerase III subunit beta [Marinobacter manganoxydans MnI7-9]
gi|385333444|ref|YP_005887395.1| DNA polymerase III subunit beta [Marinobacter adhaerens HP15]
gi|311696594|gb|ADP99467.1| DNA polymerase III, beta chain [Marinobacter adhaerens HP15]
gi|357226211|gb|EHJ04692.1| DNA polymerase III subunit beta [Marinobacter manganoxydans MnI7-9]
Length = 367
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 174/309 (56%), Gaps = 3/309 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L ++ E ++L PLQ + +VEKK +P+LSN+L+ ++ T+ EV++
Sbjct: 1 MKLTISRE--SLLTPLQSIAGVVEKKQTMPVLSNVLLVAEDNTLTLTGTNMEVELVARVT 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + I V ARK DI R+L + + + +E + ++ G S FTL TL A+ +P
Sbjct: 59 PVHVDQPGRITVPARKLSDISRALGDEAPMELSLEGDRLHLRCGASHFTLSTLPAEHFPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + F L QK L +L+ F++AQQD+RYYLNGLLL K ++ V++DGHRL
Sbjct: 119 VE-DEDESFRLELPQKELGRMLDATAFAMAQQDVRYYLNGLLLEVDKDHVRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + +I+PRK V L RLL++ E PV L I +N ++ + SKL
Sbjct: 178 AMAHLELATNCPELRQVIVPRKGVLELARLLDDVETPVTLVIGDNHLRATVGSYTFTSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
I+GKF DY VI +K L +R L +LQR I+S++ ++GVRL + N L++ ++
Sbjct: 238 IEGKFPDYNRVIPRGGDKIVLADRATLKNTLQRAGILSHENIRGVRLNLASNELQVFANN 297
Query: 301 SNREKASST 309
++E+A
Sbjct: 298 PDQEQAEDA 306
>gi|117619320|ref|YP_854529.1| DNA polymerase III subunit beta [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117560727|gb|ABK37675.1| DNA polymerase III, beta subunit [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 367
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 176/306 (57%), Gaps = 3/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQL ++ E A+L PLQ+V + + LPIL N+L+ ++ +S TD EV++
Sbjct: 1 MQLEISRE--ALLRPLQLVSGALGGRPTLPILGNVLLDVSNGLLSLTGTDLEVEMIGQVY 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + V ARK +DI R LPE + + E + + I+SG+S+F L TL A EYP
Sbjct: 59 LNSDSQDGRTTVPARKLLDICRGLPEGADIRLNTEGERLIIRSGRSRFNLSTLPATEYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + EF + Q LK +++ FS+A QD+RYYLNG+L + + V++DGHRL
Sbjct: 119 IE-DWESVLEFDIGQLELKKLIDATQFSMASQDVRYYLNGMLFESEGHGLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + + +I+PRK V L RLLE ++ PV L+I + ++ SKL
Sbjct: 178 ATCRREVVTESLPDHQVILPRKGVLELVRLLEAEDKPVRLQIGRSNLRAALDGFIFTSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
+DG+F D++ VI +K+ + R L ++ R +I+SN+K +GVRL ++ N L+IT ++
Sbjct: 238 VDGRFPDWRRVIPRNSDKALIAGREDLRQAFARAAILSNEKFRGVRLNLQENLLRITANN 297
Query: 301 SNREKA 306
+E+A
Sbjct: 298 PEQEEA 303
>gi|335423892|ref|ZP_08552910.1| DNA polymerase III, beta subunit [Salinisphaera shabanensis E1L3A]
gi|334890643|gb|EGM28905.1| DNA polymerase III, beta subunit [Salinisphaera shabanensis E1L3A]
Length = 366
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/306 (33%), Positives = 181/306 (59%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ V ++ +L LQ VI +VE++ +PILSN+L+ +++I +TD E+++ T T
Sbjct: 1 MQFTV--QRKDLLTALQTVIGVVERRQTMPILSNVLIKAENDRIVITATDLELELITDTP 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
G I ARK +DI R LP+ ++T+ + + ++SG+S+FTL T+ A+++P
Sbjct: 59 AVIGQPGAAAI-PARKLLDICRGLPDDAEITLEHDGQQTRVQSGRSRFTLSTMAAQDWPY 117
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + L ++ LK +L+ +F++A QD+RYYLNGLLL+ + V++DGHRL
Sbjct: 118 LD-EVESGQQIALPERLLKGLLDRTHFAMAHQDVRYYLNGLLLALRSDRARCVATDGHRL 176
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
++ I+PRK + L RLL++ E + L++S +++ + +KL
Sbjct: 177 ALSDTTLNIAIDEPIQAIVPRKAITELVRLLDSSEAEITLQLSTKHLRLQLPGLVFTTKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ VI ++ +K +R+ + ++L R +I+SN+K GVRL + + L++ +
Sbjct: 237 IDGRFPDYERVIPDQADKQMHADRDTIRQALSRTAILSNEKFGGVRLALSEHSLRLQAQN 296
Query: 301 SNREKA 306
RE+A
Sbjct: 297 VEREEA 302
>gi|374314435|ref|YP_005060864.1| DNA polymerase III, b subunit [Serratia symbiotica str. 'Cinara
cedri']
gi|363988661|gb|AEW44852.1| DNA polymerase III, b subunit [Serratia symbiotica str. 'Cinara
cedri']
Length = 366
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/301 (38%), Positives = 178/301 (59%), Gaps = 6/301 (1%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + + ILPIL N+L+ + STD E+++ + +
Sbjct: 6 EREHLLKPLQQVSNPLSGRLILPILGNLLLQVVEGSLLLTSTDLEIEMVAHIPLLQPYKI 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V +RKF DI R LPE +T+ +E + + + SG S+F+L TL A ++P + +
Sbjct: 66 GKTTVPSRKFFDICRGLPEDAIITVTLEGRRILVSSGCSRFSLSTLPATDFPNL---DYW 122
Query: 128 DFE--FTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
D E FTLSQ LK +L FS+A QD+RYYLNG+L Q + +++DGHRL +
Sbjct: 123 DSEVKFTLSQVVLKRLLEATQFSMAHQDVRYYLNGMLFETQGSELRTIATDGHRLAICSM 182
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKF 245
I ++ S S +I+PRK V L RLL + ++P++L+I +N I+ N+ SKL+DG+F
Sbjct: 183 PIGQELSPYS-VIVPRKGVIELARLLGSGDDPLQLQIGSNNIRAHVKNLIFTSKLVDGRF 241
Query: 246 LDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREK 305
DY+ V+ +K VN N L ++ R++I+SNDK +GVRL + N LKIT ++ E+
Sbjct: 242 PDYRRVLPTGPDKILEVNCNLLKQAFARVAILSNDKFRGVRLYLSHNQLKITANNLEHEE 301
Query: 306 A 306
A
Sbjct: 302 A 302
>gi|183597171|ref|ZP_02958664.1| hypothetical protein PROSTU_00414 [Providencia stuartii ATCC 25827]
gi|386743468|ref|YP_006216647.1| DNA polymerase III subunit beta [Providencia stuartii MRSN 2154]
gi|188023485|gb|EDU61525.1| DNA polymerase III, beta subunit [Providencia stuartii ATCC 25827]
gi|384480161|gb|AFH93956.1| DNA polymerase III subunit beta [Providencia stuartii MRSN 2154]
Length = 366
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 175/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ + TD E+++ + + +
Sbjct: 6 EREQLLKPLQQVSGPLGGRPTLPILGNLLLQVKEGALLLTGTDLEMEMMAHVPLTQEHDV 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +++ + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDIWRGLPEGSEIRVELDDDRLLVRSGRSRFSLSTLPATDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EF+L Q LK ++ FS+A QD+RYYLNG+L + + + VS+DGHRL ++I
Sbjct: 125 EVEFSLPQSILKRLIEATQFSMAHQDVRYYLNGMLFETEGQLLRTVSTDGHRLAVCAMDI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ + PV+L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQDLPSHS-VIVPRKGVIELMRLLDGGDTPVQLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL N L+IT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEARCDLLKQAFSRAAILSNEKFRGVRLYFSENQLRITANNPEQEEA 302
>gi|345871393|ref|ZP_08823339.1| DNA polymerase III, beta subunit [Thiorhodococcus drewsii AZ1]
gi|343920556|gb|EGV31287.1| DNA polymerase III, beta subunit [Thiorhodococcus drewsii AZ1]
Length = 367
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 169/297 (56%), Gaps = 5/297 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ VVN ++ + + VI +VE++ LPIL N++V + F +D EV++T A
Sbjct: 1 MEFVVN--RDTLWPIVGRVIGVVERRQTLPILGNLMVTARDGLVRFTGSDQEVEVTAECA 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
V RK DI RSL E + +N + +G+ +FTL L A +YP+
Sbjct: 59 ADVSEEG-ETTVPGRKLADICRSLNEGTDIRFMTKNDRCVLTAGRGRFTLGVLSATDYPL 117
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
M + + L++ LK +L F++AQQD+RYYLNGLL+ FQ ++ AV++DGHRL
Sbjct: 118 MEVE-QGGRGIPLAEGVLKRLLEKTAFAMAQQDVRYYLNGLLVEFQGTSMTAVATDGHRL 176
Query: 181 TYYQVNI-DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
Y+V + D +I+P KTV L+RLL N E V+ + ++I ++SK
Sbjct: 177 ARYRVRLSDADLGEARQVIVPSKTVLELKRLLGNTEEVVDFSVGTKSVRISVGQTTMVSK 236
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
L+DG++ DY+ VI + +K+ ++N+++L +L R +I+SN+K +GVRL L++
Sbjct: 237 LVDGRYPDYERVIPHSLDKTTILNKDELKSALSRTAILSNEKYRGVRLAFDEGVLRL 293
>gi|333898210|ref|YP_004472083.1| DNA polymerase III subunit beta [Pseudomonas fulva 12-X]
gi|333113475|gb|AEF19989.1| DNA polymerase III, beta subunit [Pseudomonas fulva 12-X]
Length = 367
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 165/289 (57%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ A+
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVALEDAAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPADALIDIRVDEQKLLVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
F L Q L+ ++ F++AQQD+RYYLNG+LL Q + AV++DGHRL ++
Sbjct: 125 SLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVQTGILRAVATDGHRLAMCSMDA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ +I+PRK + L RLL ++ V + + + I+ SKL+DGKF D
Sbjct: 185 TIQQDGKHQVIVPRKGILELARLLTEQDGEVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPRGGDKLVVADRQGLREAFSRTAILSNEKYRGIRLQLAAGLLKI 293
>gi|254428026|ref|ZP_05041733.1| DNA polymerase III, beta subunit [Alcanivorax sp. DG881]
gi|196194195|gb|EDX89154.1| DNA polymerase III, beta subunit [Alcanivorax sp. DG881]
Length = 366
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 167/296 (56%), Gaps = 4/296 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ +N E+ +L PLQ V ++VEK+ LP+LSN+L+ ++S TD E+++
Sbjct: 1 MKFSINREQ--LLKPLQQVAAVVEKRQTLPVLSNVLLEVGDGQLSMTGTDLELELVARLP 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ V ARK +DI +SLP + ++ + M ++SG+S+FTL TL A E+P
Sbjct: 59 LEGEQEPGETTVPARKLVDIAKSLPAEADIRFEVDGERMLVRSGRSRFTLSTLPASEFPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ ++ + L+ +++ FS+AQQD+RYYLNG+L + + AV++DGHRL
Sbjct: 119 LEEDAAGS-RLEMKPDVLRGLIDRTAFSMAQQDVRYYLNGMLFELKPGRLRAVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+D S +I+PRK V L R+L + L I N ++I+ I SKL
Sbjct: 178 ALCDAELDAPVEEAS-VILPRKGVMELSRILGDSGEAARLTIGRNHVRIVVGAITFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
+DGKF +Y VI + + + +R L ++L R++I+SN+K +GVR+ + L+I
Sbjct: 237 VDGKFPEYDRVIPKEGSRKVVADRETLRQALARVAILSNEKYRGVRVQLSEGSLRI 292
>gi|315634816|ref|ZP_07890098.1| DNA-directed DNA polymerase III beta subunit [Aggregatibacter
segnis ATCC 33393]
gi|315476368|gb|EFU67118.1| DNA-directed DNA polymerase III beta subunit [Aggregatibacter
segnis ATCC 33393]
Length = 366
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 180/306 (58%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ +++ E +L PLQ V ++ + +P+L+N+L+ + ++S TD EV+++T T
Sbjct: 1 MQFIISREN--LLKPLQQVCGVLNSRPNIPVLNNVLLQIENNQLSITGTDLEVELSTQTP 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + A+KF+DI RSLP+ ++T+ E ++S +SKF L TL A++YP
Sbjct: 59 LLHAEQDGKFTIPAKKFLDICRSLPDNAEITVTFEEDRAIVRSDRSKFNLSTLPAEDYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+T + + + +FTL Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHRL
Sbjct: 119 LT-DWQSEVDFTLEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ +++ + S +I+PRK V L RLLE E P L+I N ++I +NI SKL
Sbjct: 178 AVCTIPLEQDLQTHS-VILPRKGVLELARLLEPSEQPARLQIGTNNLRIQLNNITFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ + L ++ R +I+SN++ + VRL + N LKIT ++
Sbjct: 237 IDGRFPDYRRVLPRNATRIVEAGWETLKQAFVRAAILSNERFRSVRLQLSENQLKITATN 296
Query: 301 SNREKA 306
+E A
Sbjct: 297 PEQEVA 302
>gi|146305044|ref|YP_001185509.1| DNA polymerase III subunit beta [Pseudomonas mendocina ymp]
gi|421505597|ref|ZP_15952534.1| DNA polymerase III subunit beta [Pseudomonas mendocina DLHK]
gi|145573245|gb|ABP82777.1| DNA polymerase III, beta subunit [Pseudomonas mendocina ymp]
gi|400343649|gb|EJO92022.1| DNA polymerase III subunit beta [Pseudomonas mendocina DLHK]
Length = 367
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 164/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVTLEDAAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++++ + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPSDALIDIRVDDQKLLVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
F L Q L+ ++ F++AQQD+RYYLNG+LL Q + AV++DGHRL +
Sbjct: 125 SLTFNLPQAKLRRLIERTSFAMAQQDVRYYLNGMLLEVQSGMLRAVATDGHRLAMCSMEA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ +I+PRK + L RLL ++ V + + + I+ SKL+DGKF D
Sbjct: 185 AIQQDGKHQVIVPRKGILELARLLTEQDAEVAIVLGQHHIRANTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPRGGDKLVLADRQGLREAFSRTAILSNEKYRGIRLTLAAGLLKI 293
>gi|119503574|ref|ZP_01625657.1| DNA polymerase III subunit beta [marine gamma proteobacterium
HTCC2080]
gi|119460636|gb|EAW41728.1| DNA polymerase III subunit beta [marine gamma proteobacterium
HTCC2080]
Length = 365
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 177/298 (59%), Gaps = 3/298 (1%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ A++ PL +V +VE++ LPILSN+L+ ++S TD EV++ V G
Sbjct: 7 REALIKPLNLVAGVVERRQTLPILSNVLLNLEGTQLSLTGTDLEVELIGRVEVEAGGVDG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
+I V ARK +DI +SLP++ ++ +++ +K+G+ +FTL TL A E+P + S D
Sbjct: 67 DITVPARKLVDICKSLPDSSQIEFSVDSGKAMVKAGRGRFTLSTLPATEFPSVD-ESAGD 125
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
++Q +K +++ F++AQQD+RYYLNG+LL + + V++DGHRL N +
Sbjct: 126 QTLEVAQSVVKRLIDRTAFAMAQQDVRYYLNGMLLELKAGRLRMVATDGHRLALCTAN-E 184
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ + IIIPRK V L RLL+ E+ + L I +N I+ SKL+DGKF +Y
Sbjct: 185 AVSTGDAAIIIPRKGVLELSRLLDTDES-IRLVIGSNHIRAANQQFTFTSKLVDGKFPEY 243
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ V+ +K+ + R +L ++ R +I+SN+K +GVRL + + L IT ++ +E+A
Sbjct: 244 ERVLPKSADKTVIGQRLELRQAFTRTAILSNEKYRGVRLKLSADTLDITANNPEQEQA 301
>gi|304414286|ref|ZP_07395654.1| DNA polymerase III beta subunit [Candidatus Regiella insecticola
LSR1]
gi|304283500|gb|EFL91896.1| DNA polymerase III beta subunit [Candidatus Regiella insecticola
LSR1]
Length = 375
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 180/309 (58%), Gaps = 7/309 (2%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG--YGN 65
++ +L PLQ V + + LPIL+N+L+ + ++ TD E+++ A+ +
Sbjct: 6 KREHLLKPLQQVSGPLSARTALPILANLLLQVSDNTLTLTGTDLEIEMVATIALSQSHKT 65
Query: 66 SSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP-IMTLN 124
+ + V ARKF DI R LPE ++T+ +E K + I+SG S+F+L L A+++P + L
Sbjct: 66 ETGSTTVPARKFFDICRGLPEDAEITVTLETKRLSIRSGHSRFSLSILSARDFPNLADLK 125
Query: 125 SKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQ 184
+ + E T+S LKC+++ F++A QD+RYYLNG+L + + + A+++DGHRL
Sbjct: 126 KEKEVELTVSPAALKCLIDSTQFAMAHQDVRYYLNGMLFEVEGEKLCAITTDGHRLAVCS 185
Query: 185 VNIDKKFSSCS----DIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+I +K ++ +I+PRK V L RLL E+ + L+I +N I++ + SKL
Sbjct: 186 TSIIQKDTAQELKKYSVIVPRKAVIELARLLSGGEDRLCLQIGSNNIRVHLNGFIFTSKL 245
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
+DG+F DYK V K + N +L ++ R +I+SN K +GVRL I LKIT ++
Sbjct: 246 VDGRFPDYKRVFPKNPSKIVIANCEQLKQAFSRAAILSNAKFRGVRLHISAGKLKITANN 305
Query: 301 SNREKASST 309
+E+A T
Sbjct: 306 PEQEEAEET 314
>gi|336450434|ref|ZP_08620885.1| DNA polymerase III, beta subunit [Idiomarina sp. A28L]
gi|336282829|gb|EGN76050.1| DNA polymerase III, beta subunit [Idiomarina sp. A28L]
Length = 366
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 178/298 (59%), Gaps = 2/298 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
++A+L PLQ+V VE++N LPILSN+L+ + + TD EV++ + + G +
Sbjct: 7 RDALLKPLQVVSGAVERRNTLPILSNVLIQVTEDSLRMTGTDLEVELVSEIEL-EGATPG 65
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
+ V A+K +DI+RSL E V + + +++ +S+FTL +L A ++P + + +
Sbjct: 66 EVTVPAKKLLDIVRSLSEGADVKFEASDDKVVVRASRSRFTLSSLPASDFPNID-EWESE 124
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
+ ++Q LK ++ +FS+A QD+RYYLNG+L + V++DGHRL V+++
Sbjct: 125 IQIQMAQGDLKDLMEKTHFSMANQDVRYYLNGMLFEVNDDVLRTVATDGHRLALSAVSLE 184
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ +I+PRK V L RLL + + PV L + N I++ N+ SKL+DG+F DY
Sbjct: 185 QSALPHKQVIVPRKGVSELLRLLGDDDAPVSLSLGQNHIRVTTGNMTFTSKLLDGRFPDY 244
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ V+ ++ + +R+ L +S R SI+SN+K +GVR+ + PN + +T ++ +E+A
Sbjct: 245 RRVLPQGGDRIVVADRDLLRQSCVRASILSNEKFRGVRMALSPNEVVLTANNPEQEQA 302
>gi|33151999|ref|NP_873352.1| DNA polymerase III subunit beta [Haemophilus ducreyi 35000HP]
gi|33148221|gb|AAP95741.1| DNA polymerase III beta chain [Haemophilus ducreyi 35000HP]
Length = 367
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 111/316 (35%), Positives = 184/316 (58%), Gaps = 6/316 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQL + E+ +L PLQ V ++ + LP+++NIL+ N ++S TD EV++TT
Sbjct: 1 MQLTITREQ--LLKPLQQVCGVLSSRPTLPVINNILLDINGSRLSLTGTDLEVELTTQAE 58
Query: 61 VGYG-NSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP 119
+ + S + A+K++DI RSLPE ++I E I++ +SKF L TL A +YP
Sbjct: 59 LEQAVDFSGKFTLPAKKWLDICRSLPENSLISIQFEQDRALIRADRSKFNLATLPASDYP 118
Query: 120 IMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+ ++ K + +F++ Q TL +++ FS+A QD RY+LNG+ + + V++DGHR
Sbjct: 119 NL-MDWKPEVDFSMEQSTLSRLIDATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHR 177
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L + + ++ ++ S +I+PRK V L R+L +PV L+I N ++I + + SK
Sbjct: 178 LAVCTMALSQELTTHS-VIVPRKAVLELSRILSMTADPVRLEIGTNNLRISMNGVVFTSK 236
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG+F DY+ V+ ++ L R+L R +I+SN+K GVRL + N LKIT +
Sbjct: 237 LIDGRFPDYRRVLPRNADRILEAETEMLKRALMRAAILSNEKFHGVRLALSENMLKITAN 296
Query: 300 SSNREKASS-TDLIYH 314
+ +E+A D+ Y
Sbjct: 297 NPEQEEAEEIIDVAYQ 312
>gi|359298767|ref|ZP_09184606.1| DNA polymerase III subunit beta [Haemophilus [parainfluenzae] CCUG
13788]
gi|402306946|ref|ZP_10825979.1| DNA polymerase III, beta subunit [Haemophilus sputorum HK 2154]
gi|400373790|gb|EJP26717.1| DNA polymerase III, beta subunit [Haemophilus sputorum HK 2154]
Length = 367
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 109/310 (35%), Positives = 181/310 (58%), Gaps = 11/310 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYT- 59
MQ + E+ +L PLQ V ++ + LP++ NIL+ ++S TD EV++TT
Sbjct: 1 MQFTITREQ--LLKPLQQVCGVLSNRPTLPVIGNILLEIQGNQLSMTGTDLEVELTTLAT 58
Query: 60 ---AVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAK 116
AV + + A+KF+DI RSLPE +++ E +++ +SKF L TL A
Sbjct: 59 LEQAVEFDG---KFTIPAKKFLDICRSLPEDSMISVQFEEDRALVRAARSKFNLATLPAS 115
Query: 117 EYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSD 176
+YP + ++ K + +FT+ Q TL +++ FS+A QD RY+LNG+ + + V++D
Sbjct: 116 DYPNL-MDWKPEVDFTIDQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLRTVATD 174
Query: 177 GHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEI 236
GHRL + + ++ ++ S +I+PRK V L RL+ + PV L+I ++ I++ + I
Sbjct: 175 GHRLAVCTMALSQELTTHS-VIVPRKAVLELSRLVSGNQEPVRLEIGSSNIRVSMNGIVF 233
Query: 237 ISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
SKLIDG+F DY+ V+ ++ L R+L R +I+SN+K +GVRL +K N LKI
Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALKDNVLKI 293
Query: 297 TVSSSNREKA 306
T ++ +E+A
Sbjct: 294 TANNPEQEEA 303
>gi|389736361|ref|ZP_10189920.1| DNA polymerase III subunit beta [Rhodanobacter sp. 115]
gi|388439465|gb|EIL96023.1| DNA polymerase III subunit beta [Rhodanobacter sp. 115]
Length = 366
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 173/290 (59%), Gaps = 4/290 (1%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ +L PLQ V+ +VE++ LP+L+N+LV ++S TD EV++ T
Sbjct: 6 QREVLLKPLQQVVGVVERRQTLPVLANLLVRVVDGRLSLTGTDLEVEMVASTEAEKLEDG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I + ARK DI+R+LP+ ++ + + + + +G+S+FTL TL A E+P T++
Sbjct: 66 -DITIPARKLFDIVRALPDGARIDMKLNGDRVALSAGRSRFTLATLPASEFP--TIDEIE 122
Query: 128 DFE-FTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVN 186
E +L ++ L+ ++ F++A QD+RYYLNG+LL Q+ + V++DGHRL +
Sbjct: 123 LVEKVSLPEEVLRELMERTAFAMANQDVRYYLNGMLLDLQEHTLRCVATDGHRLALKETR 182
Query: 187 IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFL 246
+D K SS IIIPRK V L L E + VEL+ N +++ ++ SKLIDG+F
Sbjct: 183 LDSKVSSRRQIIIPRKGVNELVGLFETGDGMVELEFGRNHLRVRRGDVVFTSKLIDGRFP 242
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
DY+ VI +K ++R L +LQR +I+SN+K +GV+L + P L++
Sbjct: 243 DYEAVIPLGADKHATLDREVLRGALQRAAILSNEKYRGVKLELSPGKLRL 292
>gi|296134506|ref|YP_003641748.1| DNA polymerase III subunit beta [Thiomonas intermedia K12]
gi|295794628|gb|ADG29418.1| DNA polymerase III, beta subunit [Thiomonas intermedia K12]
Length = 371
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 107/297 (36%), Positives = 179/297 (60%), Gaps = 6/297 (2%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQI--TTYTAVG 62
+ + ++ +L L IVE++ LPIL+N+L+ N+ F+++D EVQI AV
Sbjct: 4 LTSSRDELLKLLGQGAGIVERRQTLPILANVLIQHNANGTLFITSDMEVQIRLQAGEAVQ 63
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
I V RK +DILR+ VT+ + M +++ KS+F+LQTL A+++P++
Sbjct: 64 TSAEDAAITVNMRKLLDILRA-ASPGNVTLEWSDGKMTVRAAKSRFSLQTLPAEDFPLVR 122
Query: 123 LNSKY-DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLT 181
+ + D L QK LK +L + +F++AQ DIRYYLNG+L + + V++DGHR+T
Sbjct: 123 AATDFSDHALRLPQKLLKRLLGLTHFAMAQHDIRYYLNGMLWVADGQQMHLVATDGHRMT 182
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENP-VELKISNNQIKIIFSNIEIISKL 240
++K +II+PRKTV L RLL ++++ +++ +++NQ ++ +E SKL
Sbjct: 183 LASAPLEKAVER-REIILPRKTVLELSRLLSDEDDAMIDIALASNQARLTLDGLEFTSKL 241
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
I+GKF DY+ V+ + V R L +LQR++I++NDK KGVR+ ++P L++T
Sbjct: 242 IEGKFPDYQRVVPKGHRNMLQVERTTLQAALQRVAILTNDKFKGVRVNLEPGLLRLT 298
>gi|410692018|ref|YP_003622639.1| DNA polymerase III, beta subunit [Thiomonas sp. 3As]
gi|294338442|emb|CAZ86768.1| DNA polymerase III, beta subunit [Thiomonas sp. 3As]
Length = 371
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 107/297 (36%), Positives = 179/297 (60%), Gaps = 6/297 (2%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQI--TTYTAVG 62
+ + ++ +L L IVE++ LPIL+N+L+ N+ F+++D EVQI AV
Sbjct: 4 LTSSRDELLKLLGQGAGIVERRQTLPILANVLIQHNANGTLFITSDMEVQIRLQAGGAVQ 63
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
I V RK +DILR+ VT+ + M +++ KS+F+LQTL A+++P++
Sbjct: 64 TSAEDAAITVNMRKLLDILRA-ASPGNVTLEWSDGKMTVRAAKSRFSLQTLPAEDFPLVR 122
Query: 123 LNSKY-DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLT 181
+ + D L QK LK +L + +F++AQ DIRYYLNG+L + + V++DGHR+T
Sbjct: 123 AATDFSDHALRLPQKLLKRLLGLTHFAMAQHDIRYYLNGMLWVADGQQMHLVATDGHRMT 182
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENP-VELKISNNQIKIIFSNIEIISKL 240
++K +II+PRKTV L RLL ++++ +++ +++NQ ++ +E SKL
Sbjct: 183 LATAPLEKAVER-REIILPRKTVLELSRLLSDEDDAMIDIALASNQARLTLDGLEFTSKL 241
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
I+GKF DY+ V+ + V R L +LQR++I++NDK KGVR+ ++P L++T
Sbjct: 242 IEGKFPDYQRVVPKGHRNMLQVERTTLQAALQRVAILTNDKFKGVRVNLEPGLLRLT 298
>gi|221135256|ref|ZP_03561559.1| DNA polymerase III, beta subunit [Glaciecola sp. HTCC2999]
Length = 368
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 182/307 (59%), Gaps = 4/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ ++ E+ L PLQ+V +E+++ LPILSNIL+ ++ TD EV++ ++ +
Sbjct: 1 MKFTISREQ--FLQPLQLVSGAIERRHTLPILSNILLVVKEGVLTLTGTDLEVELISHLS 58
Query: 61 VGYGN-SSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP 119
+ + I V A+K +DI R L + +T ++ I+SG+ ++TL TL A +YP
Sbjct: 59 LAADSYEDGEITVPAKKLVDICRGLSDGNDITFQVDGTKATIRSGRGRYTLSTLSASDYP 118
Query: 120 IMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+ + + D EF +SQ LK +++ F++AQQD+RYYLNG+ L + NI V++DGHR
Sbjct: 119 NLE-DWQADVEFVISQNDLKHLIDSTSFAMAQQDVRYYLNGMSLETEDNNIRTVATDGHR 177
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L + + +IIPRK V + RL+E +N V++KI +N I + S SK
Sbjct: 178 LALCNLAYTTETLPVRQVIIPRKGVLEINRLIEANDNSVKVKIGSNHISVKSSGFVFTSK 237
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
L+DG+F D++ V+ + K+ N++ + ++ R SI+SN+K +GVRL + LKIT +
Sbjct: 238 LVDGRFPDHRRVLPKETTKAVTANKDVMKKAFSRASILSNEKFRGVRLNLSNGELKITAN 297
Query: 300 SSNREKA 306
+ +E+A
Sbjct: 298 NPEQEEA 304
>gi|330500916|ref|YP_004377785.1| DNA polymerase III subunit beta [Pseudomonas mendocina NK-01]
gi|328915202|gb|AEB56033.1| DNA polymerase III subunit beta [Pseudomonas mendocina NK-01]
Length = 367
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 164/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVTLEDAAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++++ + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPSDALIDIRVDDQKLLVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
F L Q L+ ++ F++AQQD+RYYLNG+LL Q + AV++DGHRL +
Sbjct: 125 SLTFNLPQAKLRRLIERTSFAMAQQDVRYYLNGMLLEVQSGLLRAVATDGHRLAMCSMEA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ +I+PRK + L RLL ++ V + + + I+ SKL+DGKF D
Sbjct: 185 SIQQDGKHQVIVPRKGILELARLLTEQDAEVSIVLGQHHIRANTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPRGGDKLVLADRQGLREAFSRTAILSNEKYRGIRLTLADGLLKI 293
>gi|254468927|ref|ZP_05082333.1| DNA polymerase III, beta subunit [beta proteobacterium KB13]
gi|207087737|gb|EDZ65020.1| DNA polymerase III, beta subunit [beta proteobacterium KB13]
Length = 316
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 156/241 (64%), Gaps = 1/241 (0%)
Query: 66 SSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
+ I ++ARK DI R+LPE ++ I + +K+GKSKF LQTL +K+YP++ N
Sbjct: 13 TDFEITISARKLFDITRALPENSELDFQINESRVNVKAGKSKFNLQTLPSKDYPLLKKND 72
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
LSQ LK +L V F++AQQDIRYYLNGLL Q + + V +DGHRL++
Sbjct: 73 SESVSVKLSQNKLKELLKQVDFAMAQQDIRYYLNGLLFEIQGQKLNIVGTDGHRLSFTST 132
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKF 245
+D + ++IIPRKT+ L +LL++ + VEL+I N Q+ F +I II+K+IDGKF
Sbjct: 133 KLDDSYEK-KEVIIPRKTIMELIKLLDDSDEIVELEILNQQVTFKFGDIFIITKVIDGKF 191
Query: 246 LDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREK 305
DY VI YE FL++R LL ++QR SI+SN+K +G+RLV+ N +++ ++S +E+
Sbjct: 192 PDYNRVIPVGYENGFLIDRQMLLNAMQRASILSNEKYRGIRLVLSENNMQLITTNSEQEE 251
Query: 306 A 306
A
Sbjct: 252 A 252
>gi|56459114|ref|YP_154395.1| DNA polymerase sliding clamp subunit [Idiomarina loihiensis L2TR]
gi|56178124|gb|AAV80846.1| DNA polymerase sliding clamp subunit [Idiomarina loihiensis L2TR]
Length = 367
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 174/298 (58%), Gaps = 1/298 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
++A L PLQ+V VE+++ LPILSN+L+ ++ ++ TD EV++ + + +
Sbjct: 7 RDAFLKPLQVVSGAVERRHTLPILSNLLLQVDNGQLKLTGTDLEVELVSAVPLESADMDA 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
+ V A+K +DI+RSLPE + + +KSG+SKF L TL + ++P + + K D
Sbjct: 67 AVTVPAKKLLDIVRSLPEGSTIEFTSQEDSATVKSGRSKFKLSTLSSDDFPNID-DWKSD 125
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
Q LK ++ +FS+A QD+RYYLNG+L + +V++DGHRL ID
Sbjct: 126 IHLVTEQAVLKDLMLKTHFSMANQDVRYYLNGMLFETDNGMLRSVATDGHRLAMSTCAID 185
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ + +I+PRK V L RLL + + V + I NN I++ + SKL+DG+F DY
Sbjct: 186 QPGLAQRQVIVPRKGVVELLRLLGDDDQEVSVSIGNNHIRVETPELVFTSKLVDGRFPDY 245
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ V+ + +K + +R+ L +S R SI+SN+K +GVRL + L IT ++ +E+A
Sbjct: 246 RRVLPSGGDKVIVAHRDALRQSFGRASILSNEKFRGVRLNLSSGELCITATNPEQEQA 303
>gi|268593489|ref|ZP_06127710.1| DNA polymerase III, beta subunit [Providencia rettgeri DSM 1131]
gi|291310911|gb|EFE51364.1| DNA polymerase III, beta subunit [Providencia rettgeri DSM 1131]
Length = 366
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 174/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ + TD E+++ A+ +
Sbjct: 6 EREQLLKPLQQVSGPLGGRPTLPILGNLLLQVKEGTLQLTGTDLEMEMMANVALTGEHEI 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + + + + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDIWRGLPEGSEIHVELNDDRLLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EF+L Q LK ++ FS+A QD+RYYLNG+L + + + VS+DGHRL ++I
Sbjct: 125 EVEFSLPQSILKRLIEATQFSMAHQDVRYYLNGMLFETEDQMLRTVSTDGHRLAVCAMDI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL N L+IT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEARCDLLKQAFSRAAILSNEKFRGVRLYFSENQLRITANNPEQEEA 302
>gi|77163563|ref|YP_342088.1| DNA-directed DNA polymerase [Nitrosococcus oceani ATCC 19707]
gi|76881877|gb|ABA56558.1| DNA polymerase III, beta subunit [Nitrosococcus oceani ATCC 19707]
Length = 367
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 114/305 (37%), Positives = 183/305 (60%), Gaps = 9/305 (2%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ I+ L V +VE+++ LPILSN+L+ ++S ++TD E++I T V +
Sbjct: 7 REEIVRHLVTVCGVVERRHTLPILSNVLLSVKDSQLSLMATDLEIEIRTALKV-LSSEEG 65
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP-IMTLNSKY 127
+ V+ARKF++I R+LP + + +I SG+S+FTL TL A+++P I ++++
Sbjct: 66 KVTVSARKFLEICRALPSGSALEAQYKEGQFYIHSGRSRFTLSTLPAEDFPSIDSIDAVA 125
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV-- 185
+ E T Q LK +L+ F +A QD+RYYLNGLLL +++I AV++DGHRL +
Sbjct: 126 ELELT--QAELKQLLHRTVFCMAHQDVRYYLNGLLLELTEESIHAVATDGHRLALASLAK 183
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKF 245
D++ + II PRK + L RLLE + PV LK NQ++ F + +KLIDG+F
Sbjct: 184 GADQEGTEIQSII-PRKAILELVRLLEESQEPVRLKFGTNQMRAEFQGLSFSTKLIDGQF 242
Query: 246 LDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREK 305
DYK VI EK F+ +R + ++L R++I++NDK +GV L + LK+ +N E+
Sbjct: 243 PDYKRVIPVGCEKQFVADRERFKQALVRVNILTNDKYRGVHLHLSD--LKLQAIVTNLEQ 300
Query: 306 ASSTD 310
S+ +
Sbjct: 301 GSAEE 305
>gi|254435596|ref|ZP_05049103.1| DNA polymerase III, beta subunit [Nitrosococcus oceani AFC27]
gi|207088707|gb|EDZ65979.1| DNA polymerase III, beta subunit [Nitrosococcus oceani AFC27]
Length = 377
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 114/305 (37%), Positives = 184/305 (60%), Gaps = 9/305 (2%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ I+ L V +VE+++ LPILSN+L+ ++S ++TD E++I T V +
Sbjct: 17 REEIVRHLVTVCGVVERRHTLPILSNVLLSVKDSQLSLMATDLEIEIRTALKV-LSSEEG 75
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP-IMTLNSKY 127
+ V+ARKF++I R+LP + + +I SG+S+FTL TL A+++P I ++++
Sbjct: 76 KVTVSARKFLEICRALPSGSALEAQYKEGQFYIHSGRSRFTLSTLPAEDFPSIDSIDAVA 135
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV-- 185
+ E T Q LK +L+ F +A QD+RYYLNGLLL +++I AV++DGHRL +
Sbjct: 136 ELELT--QAELKQLLHRTVFCMAHQDVRYYLNGLLLELTEESIHAVATDGHRLALASLAK 193
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKF 245
D++ + II PRK + L RLLE + PV LK NQ++ F + +KLIDG+F
Sbjct: 194 GADQEGTEIQSII-PRKAILELVRLLEESQEPVRLKFGTNQMRAEFQGLSFSTKLIDGQF 252
Query: 246 LDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREK 305
DYK VI EK F+ +R + ++L R++I++NDK +GV L + + LK+ +N E+
Sbjct: 253 PDYKRVIPVGCEKQFVADRERFKQALVRVNILTNDKYRGVHLHL--SDLKLQAIVTNLEQ 310
Query: 306 ASSTD 310
S+ +
Sbjct: 311 GSAEE 315
>gi|416892119|ref|ZP_11923552.1| DNA polymerase III subunit beta [Aggregatibacter aphrophilus ATCC
33389]
gi|347814988|gb|EGY31631.1| DNA polymerase III subunit beta [Aggregatibacter aphrophilus ATCC
33389]
Length = 366
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 180/306 (58%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ +++ E +L PLQ V ++ + +P+L+N+L+ + +++ TD EV+++T T
Sbjct: 1 MQFIISREN--LLKPLQQVCGVLNSRPNIPVLNNVLLQIENNQLNITGTDLEVELSTKTP 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + A+KF+DI RSLPE ++T+ E ++S +SKF L TL A++YP
Sbjct: 59 LLHAEQDGKFTIPAKKFLDICRSLPENAEITVTFEEDRAIVRSDRSKFNLSTLPAEDYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+T + + + +FTL Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHRL
Sbjct: 119 LT-DWQSEVDFTLEQATLRLLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ +++ + S +I+PRK V L RLLE + P L+I N ++I +NI SKL
Sbjct: 178 AVCTIPLEQDLQTHS-VILPRKGVLELARLLEPSDQPARLQIGTNNLRIQLNNITFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ + L ++ R +I+SN++ + VRL + N LKIT ++
Sbjct: 237 IDGRFPDYRRVLPRNATRIVEAGWETLKQAFVRAAILSNERFRSVRLQLSENQLKITATN 296
Query: 301 SNREKA 306
+E A
Sbjct: 297 PEQEVA 302
>gi|408374928|ref|ZP_11172608.1| DNA polymerase III subunit beta [Alcanivorax hongdengensis A-11-3]
gi|407765213|gb|EKF73670.1| DNA polymerase III subunit beta [Alcanivorax hongdengensis A-11-3]
Length = 366
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 169/296 (57%), Gaps = 4/296 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ +N E+ +L PLQ V ++VEK+ LP+LSN+L+ ++S TD E+++
Sbjct: 1 MKFSINREQ--LLKPLQQVAAVVEKRQTLPVLSNVLLEVTDGQLSMTGTDLELELVARLP 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + V ARK +DI +SLP + ++ + M ++SG+S+FTL TL A E+P
Sbjct: 59 LEGEHEPGETTVPARKLVDIAKSLPAEADIRFEVDGERMLVRSGRSRFTLSTLPASEFPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ ++ + L+ +++ FS+AQQD+RYYLNG+L + + AV++DGHRL
Sbjct: 119 LEEDASGS-SLEIQPGVLRGLIDRTAFSMAQQDVRYYLNGMLFELKPGKLRAVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+D S +I+PRK V L R+L + + + N ++I+ I SKL
Sbjct: 178 ALCDAELDAPVEEAS-VILPRKGVMELSRILGDAGEAARMTVGRNHVRIVVGAITFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
+DGKF +Y+ VI + + + +R L ++L R++I+SN+K +GVR+ + L+I
Sbjct: 237 VDGKFPEYERVIPKEGSRHVIADRETLRQALARVAILSNEKYRGVRVQLSEGSLRI 292
>gi|395133108|gb|AFN44620.1| DNA polymerase III beta chain, partial [Photorhabdus sp. AM7]
Length = 340
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 173/291 (59%), Gaps = 2/291 (0%)
Query: 16 LQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAAR 75
LQ V S + + LPIL N+L+ + TD E+++ A+ + V AR
Sbjct: 1 LQQVSSPLSGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMMARVALSLPHEEGATTVPAR 60
Query: 76 KFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQ 135
KF+DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF+L Q
Sbjct: 61 KFLDIWRGLPDGAEISVELDGDRLLVRSGRSRFSLSTLPASDFPNLD-DWQSEVEFSLPQ 119
Query: 136 KTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCS 195
TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I +K S S
Sbjct: 120 ATLKRLIESTQFSMAHQDVRYYLNGMLFETEAEELRTVATDGHRLAVCSMGIGQKLPSHS 179
Query: 196 DIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVISNK 255
+I+PRK V L RLL+ + ++L+I +N I+ + SKL+DG+F DY+ V+
Sbjct: 180 -VIVPRKGVIELMRLLDGGDTLLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKN 238
Query: 256 YEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+K+ N + L ++ R +I+SN+K +GVRL N LKIT ++ +E+A
Sbjct: 239 PDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYFSKNQLKITANNPEQEEA 289
>gi|389795424|ref|ZP_10198548.1| DNA polymerase III subunit beta [Rhodanobacter fulvus Jip2]
gi|388430863|gb|EIL87990.1| DNA polymerase III subunit beta [Rhodanobacter fulvus Jip2]
Length = 366
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 175/290 (60%), Gaps = 4/290 (1%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ VI +VE++ LP+L+N+LV K+S TD EV++ T+ +
Sbjct: 6 QREALLKPLQQVIGVVERRQTLPVLANLLVKVGDGKVSLTGTDLEVEMVASTSA-EKLAD 64
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I + ARK DI+R+LP+ ++ + + + + +G+S+FTL TL A E+P T++
Sbjct: 65 GEITIPARKLFDIVRALPDGAQIDLKLNGDRVALNAGRSRFTLTTLAASEFP--TVDEIE 122
Query: 128 DFE-FTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVN 186
E +L ++ L+ ++ F++A QD+RYYLNG+LL Q+ + V++DGHRL +
Sbjct: 123 LVETVSLPEQVLRDLMEHTSFAMANQDVRYYLNGMLLDLQEHTLRCVATDGHRLAMKETQ 182
Query: 187 IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFL 246
+ ++ IIIPRK V L LLE+ + V L+ N +++ ++ SKLIDG+F
Sbjct: 183 LQSSVTTRRQIIIPRKGVNELVGLLESGDGEVALEFGRNHLRVRRGSVVFTSKLIDGRFP 242
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
DY+ VI +K+ ++R L +LQR +I+SN+K +GV+L + P L+I
Sbjct: 243 DYEAVIPLGADKTATLDREVLRGALQRAAILSNEKYRGVKLELSPGKLRI 292
>gi|251791867|ref|YP_003006587.1| DNA polymerase III subunit beta [Aggregatibacter aphrophilus
NJ8700]
gi|422336968|ref|ZP_16417940.1| DNA polymerase III subunit beta [Aggregatibacter aphrophilus F0387]
gi|247533254|gb|ACS96500.1| DNA polymerase III, beta subunit [Aggregatibacter aphrophilus
NJ8700]
gi|353345520|gb|EHB89811.1| DNA polymerase III subunit beta [Aggregatibacter aphrophilus F0387]
Length = 366
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 180/306 (58%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ +++ E +L PLQ V ++ + +P+L+N+L+ + +++ TD EV+++T T
Sbjct: 1 MQFIISREN--LLKPLQQVCGVLNSRPNIPVLNNVLLQIENNQLNITGTDLEVELSTKTP 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + A+KF+DI RSLPE ++T+ E ++S +SKF L TL A++YP
Sbjct: 59 LLHAEQDGKFTIPAKKFLDICRSLPENAEITVTFEEDRAIVRSDRSKFNLSTLPAEDYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+T + + + +FTL Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHRL
Sbjct: 119 LT-DWQSEVDFTLEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ +++ + S +I+PRK V L RLLE + P L+I N ++I +NI SKL
Sbjct: 178 AVCTIPLEQDLQTHS-VILPRKGVLELARLLEPSDQPARLQIGTNNLRIQLNNITFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ + L ++ R +I+SN++ + VRL + N LKIT ++
Sbjct: 237 IDGRFPDYRRVLPRNATRIVEAGWETLKQAFVRAAILSNERFRSVRLQLSENQLKITATN 296
Query: 301 SNREKA 306
+E A
Sbjct: 297 PEQEVA 302
>gi|146280399|ref|YP_001170552.1| DNA polymerase III subunit beta [Pseudomonas stutzeri A1501]
gi|339492079|ref|YP_004712372.1| DNA polymerase III subunit beta [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
gi|386018642|ref|YP_005936666.1| DNA polymerase III subunit beta [Pseudomonas stutzeri DSM 4166]
gi|145568604|gb|ABP77710.1| DNA polymerase III, beta subunit [Pseudomonas stutzeri A1501]
gi|327478614|gb|AEA81924.1| DNA polymerase III subunit beta [Pseudomonas stutzeri DSM 4166]
gi|338799451|gb|AEJ03283.1| DNA polymerase III subunit beta [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
Length = 367
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 169/289 (58%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ A+
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVALEDAAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP ++I ++++ + IKSG+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPSDALISIRLDDQKVVIKSGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
FT++Q L+ ++ F++AQQD+RYYLNG+L+ + AV++DGHRL +
Sbjct: 125 SLSFTVAQGKLRKLIERSAFAMAQQDVRYYLNGMLIEVSSGMLRAVATDGHRLAMCSMQA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ +I+PRK + L RLL +++ V + + + I+ SKL+DGKF D
Sbjct: 185 GIEQPDRHQVIVPRKGILELARLLNDQDAEVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R L + R +I+SN+K +G+RL ++ LKI
Sbjct: 245 YERVLPRGGDKLVVGDRQLLREAFSRTAILSNEKYRGIRLQLESGLLKI 293
>gi|429333997|ref|ZP_19214678.1| DNA polymerase III subunit beta [Pseudomonas putida CSV86]
gi|428761390|gb|EKX83623.1| DNA polymerase III subunit beta [Pseudomonas putida CSV86]
Length = 367
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 163/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLEESAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDALIDIKVDEQKLLVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
TL Q L+ ++ F++AQQD+RYYLNG+LL + AV++DGHRL ++
Sbjct: 125 SLTCTLEQSRLRRLIERTSFAMAQQDVRYYLNGMLLEVSTGTLRAVATDGHRLAMCSMSA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D + +I+PRK + L RLL + V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQADRHQVIVPRKGILELARLLTEPDGTVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLKI 293
>gi|261346741|ref|ZP_05974385.1| DNA polymerase III, beta subunit [Providencia rustigianii DSM 4541]
gi|282565141|gb|EFB70676.1| DNA polymerase III, beta subunit [Providencia rustigianii DSM 4541]
Length = 366
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 174/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ + TD E+++ + +
Sbjct: 6 EREQLLKPLQQVSGPLGGRPTLPILGNLLLQVKEGALQLTGTDLEMEMMANVPLTREHEV 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + + + + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDIWRGLPEGSEIQVELNDDRLLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EF+L Q LK ++ FS+A QD+RYYLNG+L + + + VS+DGHRL ++I
Sbjct: 125 EVEFSLPQSILKRLIEATQFSMAHQDVRYYLNGMLFETEGQLLRTVSTDGHRLAVCSMDI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
++ S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQELPSHS-VIVPRKGVIELMRLLDGGDAPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL N L+IT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEARCDLLKQAFSRAAILSNEKFRGVRLFFSENQLRITANNPEQEEA 302
>gi|422021272|ref|ZP_16367785.1| DNA polymerase III subunit beta [Providencia sneebia DSM 19967]
gi|414099741|gb|EKT61380.1| DNA polymerase III subunit beta [Providencia sneebia DSM 19967]
Length = 366
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ + TD E+++ + + +
Sbjct: 6 EREQLLKPLQQVSGPLGGRPTLPILGNLLLQVKEGVLLLTGTDLEMEMKAHVPLTQEHEL 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +++ + ++SG+S+F+L TL A+++P + + +
Sbjct: 66 GATTVPARKFFDIWRGLPEGSEIRVELDDDRLLVRSGRSRFSLSTLPAEDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EF+L Q LK ++ FS+A QD+RYYLNG+L + + + VS+DGHRL ++I
Sbjct: 125 EVEFSLPQSILKRLIEATQFSMAHQDVRYYLNGMLFETEGQQLRTVSTDGHRLAVCSMDI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ + P++L+I ++ I+ + SKL+DG+F D
Sbjct: 185 GQDLPSHS-VIVPRKGVIELMRLLDGGDAPLQLQIGSSNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL N L+IT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEARCDLLKQAFSRAAILSNEKFRGVRLYFSENQLRITANNPEQEEA 302
>gi|410091085|ref|ZP_11287662.1| DNA polymerase III subunit beta [Pseudomonas viridiflava UASWS0038]
gi|409761653|gb|EKN46712.1| DNA polymerase III subunit beta [Pseudomonas viridiflava UASWS0038]
Length = 367
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 164/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLMVVEGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I +++ + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDALIDIKVDDAKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
F L Q L+ ++ F++AQQD+RYYLNG+LL + AV++DGHRL +
Sbjct: 125 SLTFQLGQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGVLRAVATDGHRLAMCSMTA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D + + +I+PRK + + RLL ++ V + + + I+ SKL+DGKF D
Sbjct: 185 DIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKI 293
>gi|422006865|ref|ZP_16353853.1| DNA polymerase III subunit beta [Providencia rettgeri Dmel1]
gi|414098056|gb|EKT59706.1| DNA polymerase III subunit beta [Providencia rettgeri Dmel1]
Length = 366
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 173/299 (57%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ + TD E+++ A+ +
Sbjct: 6 EREQLLKPLQQVSGPLGGRPTLPILGNLLLQVKEGTLQLTGTDLEMEMMANVALTGEHEI 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + + + + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDIWRGLPEGSEIHVELNDDRLLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EF+L Q LK ++ FS+A QD+RYYLNG+L + + + VS+DGHRL ++I
Sbjct: 125 EVEFSLPQSILKRLIEATQFSMAHQDVRYYLNGMLFETEDQMLRTVSTDGHRLAVCAMDI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ + L ++ R +I+SN+K +GVRL N L+IT ++ +E+A
Sbjct: 244 YRRVLPKNPNKTLEARCDLLKQAFSRAAILSNEKFRGVRLYFSENQLRITANNPEQEEA 302
>gi|257097208|pdb|3F1V|A Chain A, E. Coli Beta Sliding Clamp, 148-153 Ala Mutant
gi|257097209|pdb|3F1V|B Chain B, E. Coli Beta Sliding Clamp, 148-153 Ala Mutant
Length = 366
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 172/299 (57%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A YYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAAAAAAYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ +NP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>gi|53802864|ref|YP_115419.1| DNA polymerase III subunit beta [Methylococcus capsulatus str.
Bath]
gi|53756625|gb|AAU90916.1| DNA polymerase III, beta subunit [Methylococcus capsulatus str.
Bath]
Length = 366
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 170/298 (57%), Gaps = 2/298 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ +L PLQ VI ++E++ LPILSN+L+ + ++ TD EVQ+ T + G S
Sbjct: 7 REDLLLPLQQVIGVIERRQTLPILSNVLIEVEAGRMELAGTDLEVQLVANTDM-EGKESG 65
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
V ARK +DI R LPE ++ ++ + + ++ GKS+F L L A+ YP + +
Sbjct: 66 RFTVPARKLMDICRLLPEGGELAFDVKPERVSLQCGKSRFILGALPAENYPNFE-HGDPE 124
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
F + L+ + F++AQQD+RYYLNGLLL ++ I AV+SDGHRL ++ +D
Sbjct: 125 AVFDCEAQLLRRAIEKTAFAMAQQDVRYYLNGLLLEIRQGRIRAVASDGHRLALFEDAVD 184
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
IIIPRK V L RLL E ++IS N ++I+F KL++G++ DY
Sbjct: 185 GMPDVARQIIIPRKGVLELGRLLARVEGSASVRISANNVRILFGTFSFAVKLVEGRYPDY 244
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ VI + +V+R++L +L R++++SN+K KGV L I +++ + E+A
Sbjct: 245 ERVIPKTACRVVVVDRHELRGALTRVAVLSNEKFKGVSLEIGEGLIRLRAQNPEHEEA 302
>gi|344343361|ref|ZP_08774230.1| DNA polymerase III, beta subunit [Marichromatium purpuratum 984]
gi|343805292|gb|EGV23189.1| DNA polymerase III, beta subunit [Marichromatium purpuratum 984]
Length = 366
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 167/296 (56%), Gaps = 4/296 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ VVN E +L L VI +VE++ LPIL N + +++ L TD EV++ T
Sbjct: 1 MEFVVNRE--ILLPALGKVIGVVERRQTLPILGNFRLVAREGELTILGTDLEVEVQTRCE 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
V ARK +DI R+L E + I ++ + +G+ +F+L L A ++P+
Sbjct: 59 AAVQEVG-ETTVPARKLVDICRNLGEGTDIRFRISDERCVVTAGRGRFSLGVLPAVDFPV 117
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
M + EF L + K +L F++AQQD+RYYLNGLL+ F K + AV++DGHRL
Sbjct: 118 ME-QEQGGVEFGLDEAGFKRVLEKTAFAMAQQDVRYYLNGLLIEFDAKGLTAVATDGHRL 176
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ ++ +I+P KTV L+R L N +PV + + I+++ ++ + SKL
Sbjct: 177 AKFNTDLGVAAVDGRQVILPSKTVLELRRQLGNSNDPVSVVLGEKSIRLVIGDMMMTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
+DG++ DY+ VI + KS ++++ L R+L R +I+SN+K +GVRL LK+
Sbjct: 237 VDGRYPDYERVIPQQLAKSAVIDKEPLKRALSRTAILSNEKYRGVRLAFDNGLLKL 292
>gi|390951121|ref|YP_006414880.1| DNA polymerase III subunit beta [Thiocystis violascens DSM 198]
gi|390427690|gb|AFL74755.1| DNA polymerase III, beta subunit [Thiocystis violascens DSM 198]
Length = 366
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 177/297 (59%), Gaps = 6/297 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ VVN E +L L V +VE++ LPILSN+ + S +++ +D EV++ T A
Sbjct: 1 MEFVVNRE--ILLPALVKVTGVVERRQTLPILSNLHLFAESGRVTMTGSDLEVEVKTDFA 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
V ++ + + ARK IDI RSL + ++ I + I SG+ +F+L L A ++P
Sbjct: 59 VETQHTG-DATIPARKLIDICRSLGDGAEIRFRIGDDRCVITSGRGRFSLGVLPAADFPF 117
Query: 121 M-TLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
M +N F+FT+S+ LK +L F++AQQD+RYYLNGLL+ F ++ AV++DGHR
Sbjct: 118 MEPVNDG--FQFTISESILKRLLEKTSFAMAQQDVRYYLNGLLIEFNATSLTAVATDGHR 175
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L Y+ + S +IIP KT+ L+R L + E + + I F N+ + SK
Sbjct: 176 LAKYRSKVAIGISEPRQVIIPSKTILELRRQLSSSEEDATMSLGEKSFHISFGNMAMTSK 235
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
++DG++ +Y+ VI + +KS L+ +++L RSL R +I+SN+K +GVRL + LK+
Sbjct: 236 IVDGRYPEYERVIPRELQKSALLKKDELKRSLSRTAILSNEKYRGVRLTFLQDTLKL 292
>gi|416052968|ref|ZP_11578603.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|347991760|gb|EGY33223.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
Length = 366
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 179/306 (58%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ +++ E +L PLQ V ++ + +P+L+N+L+ + ++S TD EV+++T T
Sbjct: 1 MQFIISREN--LLKPLQQVCGVLNSRPNIPVLNNVLLQIENNQLSITGTDLEVELSTQTP 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + A+KF+DI RSLP+ ++T+ E + S +SKF L TL A++YP
Sbjct: 59 LLHAEQDGKFTIPAKKFLDICRSLPDNAEITVTFEEDRTIVHSDRSKFNLSTLPAEDYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+T + + + +FTL Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHRL
Sbjct: 119 LT-DWQSEVDFTLEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ +++ + S +I+PRK V L RLLE + P L+I N ++I +NI SKL
Sbjct: 178 AVCTIPLEQDLQTHS-VILPRKGVLELARLLEPGDQPARLQIGTNNLRIQLNNITFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ + L ++ R +I+SN++ + VRL + N LKIT ++
Sbjct: 237 IDGRFPDYRRVLPRNATRIVEAGWETLKQAFVRAAILSNERFRSVRLQLSENQLKITATN 296
Query: 301 SNREKA 306
+E A
Sbjct: 297 PEQEVA 302
>gi|167621943|ref|YP_001672237.1| DNA polymerase III subunit beta [Shewanella halifaxensis HAW-EB4]
gi|167351965|gb|ABZ74578.1| DNA polymerase III, beta subunit [Shewanella halifaxensis HAW-EB4]
Length = 366
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 181/299 (60%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
+++A+L PLQ+V VE+++ LPIL+N+LV + + TD EV++ +
Sbjct: 6 DRDALLKPLQLVSGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGEVQLEGEVVE 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V A+KF+DI++SLP+ ++ I + + ++SG+S+FTL TL A+EYP + +
Sbjct: 66 GRTTVPAKKFLDIVKSLPDQVELKIEQQENRLLLRSGRSRFTLATLPAEEYPNVDA-FEA 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K +++ FS+A QD+RYYLNGLLL + + A+++DGHRL I
Sbjct: 125 EIEFTLKQGTMKSLIDATQFSMANQDVRYYLNGLLLETEGNVLRAIATDGHRLALSHRMI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ +I+PRK V L R E + V + I +N I+ + SKL+DG+F D
Sbjct: 185 EASLPE-KQVIVPRKGVLELMRSFEADDLDVTIAIGDNAIRATTATAVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + +R +L ++L R SI+SN+K +GVR+ ++ N +KIT ++ +E+A
Sbjct: 244 YRRVLPKGGDKIVIASRLQLKQALLRASILSNEKFRGVRVQLENNLIKITANNPEQEEA 302
>gi|443474064|ref|ZP_21064085.1| DNA polymerase III beta subunit [Pseudomonas pseudoalcaligenes
KF707]
gi|442904999|gb|ELS29914.1| DNA polymerase III beta subunit [Pseudomonas pseudoalcaligenes
KF707]
Length = 367
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 102/289 (35%), Positives = 164/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ A+
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVALEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + IK+G+SKFTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPSDALIDIRVDEQKLLIKAGRSKFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
F+L Q L+ ++ F++AQQD+RYYLNG+LL + AVS+DGHRL +
Sbjct: 125 SLNFSLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVNGGVLRAVSTDGHRLAMCSMQT 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ +I+PRK + L RLL ++ V + + + I+ SKL+DGKF D
Sbjct: 185 GIEGLDRHQVIVPRKGILELARLLTEQDGEVRIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPRGGDKLVVGDRQVLREAFSRTAILSNEKYRGIRLTLASGQLKI 293
>gi|160872676|ref|ZP_02062808.1| DNA polymerase III, beta subunit [Rickettsiella grylli]
gi|159121475|gb|EDP46813.1| DNA polymerase III, beta subunit [Rickettsiella grylli]
Length = 370
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 184/322 (57%), Gaps = 15/322 (4%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ +N E +L PLQ+V +++E++ LPILSN+L+ N +S L TD EV++
Sbjct: 1 MQFTINRE--ILLKPLQLVTAVIERRQTLPILSNLLIRLNDRNLSLLGTDMEVELAGRIT 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ S ARK +DI RSLPE ++ + ++++SG+ +F L TL A ++PI
Sbjct: 59 LEKPGQSGTTTAPARKLMDICRSLPEESELKFQQKGDKLYLQSGRCRFNLSTLPATDFPI 118
Query: 121 MTL--NSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGH 178
N +F LS K L+ ++ F++A QD+RY+LNG+L + ++ AV++DGH
Sbjct: 119 SEALDNHPEQAKFVLSPKGLRSLIESTNFAMAHQDVRYFLNGMLWELDRGSLRAVATDGH 178
Query: 179 RLTY----YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKEN-PVELKISNNQIKIIFSN 233
RL + +D + II+PRK ++ L RLL ++EN + + ++ NQ+K+ +
Sbjct: 179 RLALNVKEANITVDN-----NQIIVPRKAIYELSRLLSDEENDSLTIFLTKNQLKVAMQD 233
Query: 234 IEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNY 293
SKLIDG F DY VI +K F ++R+ SL R+S++SNDK K V L ++ N
Sbjct: 234 YTFTSKLIDGTFPDYDRVIPKSGDKIFEIDRDLFKASLLRVSVLSNDKHKSVCLELRRNL 293
Query: 294 LKITVSSSNREKASS-TDLIYH 314
L+I ++ +E A D+ YH
Sbjct: 294 LRIFANNLEQEDAEDYLDIAYH 315
>gi|399518553|ref|ZP_10759574.1| DNA polymerase III, beta subunit [Pseudomonas pseudoalcaligenes
CECT 5344]
gi|399113286|emb|CCH36131.1| DNA polymerase III, beta subunit [Pseudomonas pseudoalcaligenes
CECT 5344]
Length = 367
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 163/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVTLEDAAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPSDALIDIRVDEQKLLVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
F L Q L+ ++ F++AQQD+RYYLNG+LL Q + AV++DGHRL +
Sbjct: 125 SLTFNLPQAKLRRLIEGTSFAMAQQDVRYYLNGMLLEVQSGLLRAVATDGHRLAMCSMEA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ +I+PRK + L RLL ++ V + + + I+ SKL+DGKF D
Sbjct: 185 VIQQEGKHQVIVPRKGILELARLLTEQDAEVAIVLGQHHIRANTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPRGGDKLVLADRQGLREAFSRTAILSNEKYRGIRLTLASGLLKI 293
>gi|406914613|gb|EKD53776.1| hypothetical protein ACD_60C00155G0003 [uncultured bacterium]
Length = 368
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 103/306 (33%), Positives = 178/306 (58%), Gaps = 2/306 (0%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ +L PLQM+ +VE++ LPIL+N+L+ + +S +TD E+++ +G
Sbjct: 3 VTIERAVLLKPLQMISGVVERRQTLPILANVLITVKDQHLSLTATDLEIELIGSVPLGEP 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLN 124
+I V+ARK DI R+LPE + + +E + ++SG+S+F L TL A +P +
Sbjct: 63 GKPGSITVSARKLFDICRALPEDAVINLTLEGDQVVLRSGRSRFLLATLPANHFPSLE-E 121
Query: 125 SKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQ 184
+ + EF + Q LK +++ VYF++ QD+R+YLNG L + + V++DGHRL +
Sbjct: 122 TVFTTEFVIEQARLKKLISKVYFAMGHQDVRHYLNGALFDISQDMMKCVATDGHRLAFSS 181
Query: 185 VNIDKKFSSCSDIIIPRKTVFTLQRLLE-NKENPVELKISNNQIKIIFSNIEIISKLIDG 243
+ ++ + +I+PRK+V L RLL+ N+E V + I N ++ S SKLI+
Sbjct: 182 IKDIATSAAQTKVILPRKSVLELMRLLDVNREESVTVSIGENHFRLKSSEFTFTSKLINA 241
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNR 303
++ DY +I K + +R L ++L R SI+SN+K +GVRL + + L++ ++ +
Sbjct: 242 QYPDYDKLIPRKIASTATGSREALKQALSRASILSNEKFRGVRLQLDRDTLRVVANNPEQ 301
Query: 304 EKASST 309
E+A T
Sbjct: 302 EEAEET 307
>gi|332304388|ref|YP_004432239.1| DNA polymerase III subunit beta [Glaciecola sp. 4H-3-7+YE-5]
gi|410641019|ref|ZP_11351544.1| DNA polymerase III subunit beta [Glaciecola chathamensis S18K6]
gi|332171717|gb|AEE20971.1| DNA polymerase III, beta subunit [Glaciecola sp. 4H-3-7+YE-5]
gi|410139379|dbj|GAC09731.1| DNA polymerase III subunit beta [Glaciecola chathamensis S18K6]
Length = 367
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 179/294 (60%), Gaps = 1/294 (0%)
Query: 13 LHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIV 72
L PLQ+V VE+++ LPILSN+L+ + + TD EV++ + + I V
Sbjct: 11 LQPLQLVSGAVERRHTLPILSNVLIKVSDNALWLTGTDLEVELISNVTLTGELEEGEITV 70
Query: 73 AARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFT 132
A+K +DI+R L E +++ +I+ I+ G+SK++L TL A +YP + + + + EF
Sbjct: 71 PAKKLLDIIRGLAEGSEISFHIDGSKAIIRCGRSKYSLSTLSATDYPNLE-DWQGELEFE 129
Query: 133 LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFS 192
+SQ LK +++ V+FS+AQQD+RYYLNG+ L + I V++DGHRL ++N
Sbjct: 130 ISQSNLKRLIDSVHFSMAQQDVRYYLNGMSLETEDNVIRTVATDGHRLALCRLNYTDATL 189
Query: 193 SCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVI 252
+IIPRK V + RL+E+ + +++++ +N I+I ++ SKL+DG+F DY+ V+
Sbjct: 190 PNRQVIIPRKGVMEITRLIEDSDKSLKVQVGSNHIRIFSNDFIFTSKLVDGRFPDYRRVL 249
Query: 253 SNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+K+ + ++ L + R SI+SN+K KGVRL + +KIT ++ +E+A
Sbjct: 250 PKDGDKNIIASKLGLKNAFSRASILSNEKFKGVRLNLSSGEVKITANNPEQEEA 303
>gi|399543045|ref|YP_006556353.1| DNA polymerase III subunit beta [Marinobacter sp. BSs20148]
gi|399158377|gb|AFP28940.1| DNA polymerase III subunit beta [Marinobacter sp. BSs20148]
Length = 367
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/309 (34%), Positives = 175/309 (56%), Gaps = 3/309 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L ++ E ++L PLQ + +VEKK +P+LSN+L+ ++ T+ EV++ +
Sbjct: 1 MKLTISRE--SLLTPLQSIAGVVEKKQTMPVLSNVLLVAEDNTLTLTGTNMEVELVARIS 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + I V ARK DI R+L E + + + + ++ GKS FTL TL A+ +P
Sbjct: 59 PVHIDQPGRITVPARKLADICRALGEESPIELNQQGDRLHLRCGKSHFTLATLPAEHFPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + F L QK L+ + + F++AQQD+RYYLNGLLL ++ V++DGHRL
Sbjct: 119 VE-DEVESFRLELPQKELRRMFDSTAFAMAQQDVRYYLNGLLLEVAADHVRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+++ +I+PRK V L RLL++ + PV L I +N ++ + SKL
Sbjct: 178 AMAHQDVETGCLEARQVIVPRKGVLELSRLLDDVDTPVTLVIGDNHLRATVGSYTFTSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
I+GKF DY VI +K L +R L +LQR I+S++ ++GVRL + N L++ ++
Sbjct: 238 IEGKFPDYNRVIPRGGDKVVLADRITLKNTLQRAGILSHENIRGVRLNLASNELQVFANN 297
Query: 301 SNREKASST 309
++E+A
Sbjct: 298 PDQEQAEDA 306
>gi|418464972|ref|ZP_13035911.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|359756927|gb|EHK91084.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 366
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 179/306 (58%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ +++ E +L PLQ V ++ + +P+L+N+L+ + ++S STD EV+++T T
Sbjct: 1 MQFIISREN--LLKPLQQVCGVLNSRPNIPVLNNVLLQIENNQLSITSTDLEVELSTQTP 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + A+KF+DI RSLP+ ++T+ E + S +SKF L TL A++YP
Sbjct: 59 LLHAEQDGKFTIPAKKFLDICRSLPDNAEITVTFEEDRAIVHSDRSKFNLSTLPAEDYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + + +FTL Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHRL
Sbjct: 119 LA-DWQSEVDFTLEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ +++ + S +I+PRK V L RLLE + P L+I N ++I +NI SKL
Sbjct: 178 AVCTIPLEQDLQTHS-VILPRKGVLELARLLEPGDQPARLQIGTNNLRIQLNNITFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ + L ++ R +I+SN++ + VRL + N LKIT ++
Sbjct: 237 IDGRFPDYRRVLPRNATRIVEAGWETLKQAFVRAAILSNERFRSVRLQLSENQLKITATN 296
Query: 301 SNREKA 306
+E A
Sbjct: 297 PEQEVA 302
>gi|157959832|ref|YP_001499866.1| DNA polymerase III subunit beta [Shewanella pealeana ATCC 700345]
gi|157844832|gb|ABV85331.1| DNA polymerase III, beta subunit [Shewanella pealeana ATCC 700345]
Length = 366
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 182/299 (60%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
+++A+L PLQ+V VE+++ LPIL+N+LV ++ + TD EV++ +
Sbjct: 6 DRDALLKPLQLVSGAVERRHNLPILANLLVEVSNHSLKLTGTDLEVELVGEVQLEGEILE 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V A+KF+DI++SLP+ ++ I + + ++SG+S+FTL TL A+EYP + +
Sbjct: 66 GRTTVPAKKFLDIVKSLPDQVELKIEQQENRLLLRSGRSRFTLATLPAEEYPNVDA-FEA 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K +++ FS+A QD+RYYLNGLLL + + A+++DGHRL I
Sbjct: 125 EIEFTLKQGTMKSLIDATQFSMANQDVRYYLNGLLLETEGNVLRAIATDGHRLALSHRMI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ +I+PRK V L R E + V + I +N I+ + SKL+DG+F D
Sbjct: 185 EASLPE-KQVIVPRKGVLELMRSFEADDLDVTIAIGDNAIRATTATAVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + +R +L ++L R SI+SN+K +GVR+ ++ N +KIT ++ +E+A
Sbjct: 244 YRRVLPKGGDKVVIASRLQLKQALLRASILSNEKFRGVRVQLENNLIKITANNPEQEEA 302
>gi|392419090|ref|YP_006455694.1| DNA polymerase III subunit beta [Pseudomonas stutzeri CCUG 29243]
gi|390981278|gb|AFM31271.1| DNA polymerase III subunit beta [Pseudomonas stutzeri CCUG 29243]
Length = 367
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 167/289 (57%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ A+
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVALEEAAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++++ + IKSG+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPSDALINIRLDDQKVVIKSGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
FT+ Q L+ ++ F++AQQD+RYYLNG+L+ + AV++DGHRL +
Sbjct: 125 SLSFTVEQGKLRKLIERSSFAMAQQDVRYYLNGMLIEVSSGMLRAVATDGHRLAMCSMQA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ +I+PRK + L RLL +++ V + + + I+ SKL+DGKF D
Sbjct: 185 GIEQPDRHQVIVPRKGILELARLLNDQDAEVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R L + R +I+SN+K +G+RL ++ LKI
Sbjct: 245 YERVLPRGGDKLVVGDRQLLREAFSRTAILSNEKYRGIRLQLESGLLKI 293
>gi|386289380|ref|ZP_10066510.1| DNA polymerase III subunit beta [gamma proteobacterium BDW918]
gi|385277443|gb|EIF41425.1| DNA polymerase III subunit beta [gamma proteobacterium BDW918]
Length = 369
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 176/303 (58%), Gaps = 3/303 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG--NS 66
+ A++ PL +V +VE++ LPIL+N+ + ++++ TD EV++ + G S
Sbjct: 7 REALIKPLNLVAGVVERRQTLPILANVQLVLAGQELALTGTDLEVELIGRVQLPEGAIQS 66
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSK 126
I + A+K +DI ++LP+ + + ++++ + IKSG+S+F L TL A ++P + +K
Sbjct: 67 LGEITIPAKKLVDICKALPDGSDINLQLDDQKLIIKSGRSRFQLSTLPANDFPSVD-QAK 125
Query: 127 YDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVN 186
FTL Q LK ++ F++AQQD+RYYLNG+L + V++DGHRL
Sbjct: 126 GGQVFTLKQGELKRLIERTSFAMAQQDVRYYLNGMLFELTNGQLRLVATDGHRLAMATYV 185
Query: 187 IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFL 246
D + +I+PRK V L RLL N+E E+ I +N I++I + SKLIDGKF
Sbjct: 186 GDINVEQGAQVIVPRKGVVELARLLINEEEEAEVIIGSNHIRVITKDFTFTSKLIDGKFP 245
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
DY+ V+ K L +R L ++ R +I+SN+K +G+R+++ L+I ++ +E+A
Sbjct: 246 DYERVLPRGSTKVVLGSRADLRQAFARTAILSNEKYRGIRMLLSNGELRIVANNPEQEEA 305
Query: 307 SST 309
T
Sbjct: 306 EET 308
>gi|149912067|ref|ZP_01900658.1| DNA polymerase III subunit beta [Moritella sp. PE36]
gi|149804863|gb|EDM64900.1| DNA polymerase III subunit beta [Moritella sp. PE36]
Length = 366
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 178/306 (58%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ +N E A+L PLQ+V + + LPIL N+L+ K++ TD EV++
Sbjct: 1 MQFTINRE--ALLRPLQLVSGALGNRPTLPILGNVLLDAKEGKLTLTGTDLEVELIGQVT 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + V A+K +DI R LP++ ++ + N + +KSG+S+F+L TL A E+P
Sbjct: 59 LEGEFTEGRTTVPAKKLLDICRGLPDSAQIQVSYANDRIVVKSGRSRFSLSTLPATEFPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + D EF L Q +L+ +++ FS+A QD+RYYLNG+L + + V++DGHRL
Sbjct: 119 IE-DWDNDIEFELLQGSLRRLIDNTQFSMASQDVRYYLNGMLFETEGNILRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
D +I+PRK V L RLL+++E+ V++++ +N I+ I S KL
Sbjct: 178 AVASCEHDANLKQ-QQVIVPRKGVLELVRLLDSEEDMVKIQLGSNNIRAITSGFVFTCKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
+DG+F DY+ V+ +K + +R +L ++ R +I+SN+K +GVRL + LKIT ++
Sbjct: 237 VDGRFPDYRRVLPKNADKMLISSREELKQAFSRAAILSNEKFRGVRLNMNQGLLKITANN 296
Query: 301 SNREKA 306
+E+A
Sbjct: 297 PEQEEA 302
>gi|109896334|ref|YP_659589.1| DNA polymerase III subunit beta [Pseudoalteromonas atlantica T6c]
gi|109698615|gb|ABG38535.1| DNA polymerase III, beta subunit [Pseudoalteromonas atlantica T6c]
Length = 367
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 103/294 (35%), Positives = 179/294 (60%), Gaps = 1/294 (0%)
Query: 13 LHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIV 72
L PLQ+V VE+++ LPILSN+L+ + + TD EV++ + + I V
Sbjct: 11 LQPLQLVSGAVERRHTLPILSNVLIKVSDSALWLTGTDLEVELISNVTLTGDFEEGEITV 70
Query: 73 AARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFT 132
A+K +DI+R L E +++ +++ ++ G+SK++L TL A +YP + + + + EF
Sbjct: 71 PAKKLLDIIRGLTEGSEISFHVDGNKAILRCGRSKYSLSTLSANDYPNLE-DWQGELEFE 129
Query: 133 LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFS 192
+SQ LK +++ V+FS+AQQD+RYYLNG+ L + I V++DGHRL ++N
Sbjct: 130 ISQANLKRLIDSVHFSMAQQDVRYYLNGMSLETEDNVIRTVATDGHRLALCRLNYTDATL 189
Query: 193 SCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVI 252
+IIPRK V + RL+E+ + +++++ +N I+I ++ SKL+DG+F DY+ V+
Sbjct: 190 PNRQVIIPRKGVMEITRLIEDSDKSLKVQVGSNHIRIFSNDFIFTSKLVDGRFPDYRRVL 249
Query: 253 SNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+K+ + ++ L + R SI+SN+K KGVRL + +KIT ++ +E+A
Sbjct: 250 PKDGDKNIIASKLGLKNAFSRASILSNEKFKGVRLNLSSGEVKITANNPEQEEA 303
>gi|387121627|ref|YP_006287510.1| DNA polymerase III subunit beta [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|415756961|ref|ZP_11481215.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416037490|ref|ZP_11573952.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|416045455|ref|ZP_11575403.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|429734839|ref|ZP_19268839.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans Y4]
gi|347995299|gb|EGY36490.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|347995744|gb|EGY36897.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|348655640|gb|EGY71085.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|385876119|gb|AFI87678.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|429151109|gb|EKX93993.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans Y4]
Length = 366
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 180/306 (58%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ +++ E +L PLQ V ++ + +P+L+N+L+ + +++ TD EV+++T T
Sbjct: 1 MQFIISREN--LLKPLQQVCGVLNSRPNIPVLNNVLLQIENNQLNITGTDLEVELSTQTP 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + A+KF+D+ RSLP+ ++T+ E ++S +SKF L TL A++YP
Sbjct: 59 LFHAEHDGKFTIPAKKFLDLCRSLPDNAEITVTFEEDRAIVRSDRSKFNLSTLPAEDYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+T + + + +FTL Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHRL
Sbjct: 119 LT-DWQSEVDFTLEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ +++ + S +I+PRK V L RLLE + P L+I N ++I +NI SKL
Sbjct: 178 AVCTIPLEQDLQTHS-VILPRKGVLELARLLEPSDQPARLQIGTNNLRIQLNNITFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ + L ++ R +I+SN++ + VRL + N LKIT ++
Sbjct: 237 IDGRFPDYRRVLPRNATRIVEAGWETLKQAFVRAAILSNERFRSVRLQLSENQLKITATN 296
Query: 301 SNREKA 306
+E A
Sbjct: 297 PEQEVA 302
>gi|422016771|ref|ZP_16363350.1| DNA polymerase III subunit beta [Providencia burhodogranariea DSM
19968]
gi|414092008|gb|EKT53688.1| DNA polymerase III subunit beta [Providencia burhodogranariea DSM
19968]
Length = 366
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 174/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ + TD E+++ + +
Sbjct: 6 EREQLLKPLQQVSGPLGGRPTLPILGNLLLQVKEGALLLTGTDLEMEMMANVPLTQEHEV 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +++ + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDIWRGLPEGSEIRVELDDDRLLVRSGRSRFSLSTLPATDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EF+L Q LK ++ FS+A QD+RYYLNG+L + + + VS+DGHRL ++I
Sbjct: 125 EVEFSLPQSILKKLIEATQFSMAHQDVRYYLNGMLFETEGQLLRTVSTDGHRLAVCSMDI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
++ S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQELPSHS-VIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ + L ++ R +I+SN+K +GVRL N L+IT ++ +E+A
Sbjct: 244 YRRVLPKNPNKTLEARCDLLKQAFSRAAILSNEKFRGVRLYFSENQLRITANNPEQEEA 302
>gi|260774982|ref|ZP_05883882.1| DNA polymerase III beta subunit [Vibrio coralliilyticus ATCC
BAA-450]
gi|260609072|gb|EEX35231.1| DNA polymerase III beta subunit [Vibrio coralliilyticus ATCC
BAA-450]
Length = 366
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 178/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+N +L PLQ V + + LPIL N+L+ +S +TD EV++ + A+ +
Sbjct: 6 ERNHLLKPLQQVSGALGGRPTLPILGNLLLKVEDNMLSMTATDLEVELISRVALEGDFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
++ V +RKF+DI R LP+ +T +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSVTVPSRKFLDICRGLPDDSVITFVLEGDRVQVRSGRSRFSLSTLPANDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ QV +
Sbjct: 125 EVEVSLTQGELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVSQVQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +LL+ E PV L+I ++ ++ +N SKL+DG+F D
Sbjct: 185 GADFAQ-QQIIVPRKGVLELVKLLDAPEQPVTLQIGSSNVRAEVNNFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ ++L ++ R +I+SN+K +GVR+ + ++IT ++ +E+A
Sbjct: 244 YRRVMPQTTTKTLEAECDELRQAFSRAAILSNEKFRGVRVNLADTEMRITANNPEQEEA 302
>gi|452750231|ref|ZP_21949983.1| DNA polymerase III subunit beta [Pseudomonas stutzeri NF13]
gi|452005881|gb|EMD98161.1| DNA polymerase III subunit beta [Pseudomonas stutzeri NF13]
Length = 367
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 167/289 (57%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ A+
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVALEDAAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++++ + IKSG+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPSDALINIRLDDQKVVIKSGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
FT+ Q L+ ++ F++AQQD+RYYLNG+L+ + AV++DGHRL +
Sbjct: 125 SLSFTVEQGKLRKLIERSSFAMAQQDVRYYLNGMLIEVSSGMLRAVATDGHRLAMCSMQA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ +I+PRK + L RLL +++ V + + + I+ SKL+DGKF D
Sbjct: 185 GIEQPDRHQVIVPRKGILELARLLNDQDAEVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R L + R +I+SN+K +G+RL ++ LKI
Sbjct: 245 YERVLPRGGDKLVVGDRQLLREAFSRTAILSNEKYRGIRLQLESGLLKI 293
>gi|237806778|ref|YP_002891218.1| DNA polymerase III subunit beta [Tolumonas auensis DSM 9187]
gi|237499039|gb|ACQ91632.1| DNA polymerase III, beta subunit [Tolumonas auensis DSM 9187]
Length = 367
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 173/299 (57%), Gaps = 3/299 (1%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
++++L PLQ+V + + LPILSN+L+ +++S TD EV++ + +
Sbjct: 7 RDSLLRPLQLVSGSIGGRPTLPILSNVLLNVTEQRLSLTGTDLEVEMIGLVPLAGAVAVG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP-IMTLNSKY 127
+I ARK +DI R LP+ ++ +E + + ++SG+S+++L TL A +YP I NS
Sbjct: 67 SITTPARKLLDICRGLPDGAQLDFVLEGERLILRSGRSRYSLSTLPAADYPNIEEWNSV- 125
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
EF +SQ+ LK ++ FS+A QD+R+YLNG+L + + V +DGHRL + +
Sbjct: 126 -LEFDISQQELKRLMEATQFSMASQDVRFYLNGMLFETSGQGLRTVGTDGHRLATCRREV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S +I+PRK V L RLLEN + + L+I N ++ SKL+DG+F D
Sbjct: 185 LNEPQSDHQVILPRKGVLELARLLENDDRTIRLQIGLNNLRAEAEGFIFTSKLVDGRFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V + +K + R L ++ R +I+SN+K +GVRL + N L IT ++ +E+A
Sbjct: 245 YRRVFPRQSDKILIAERELLKQAFSRAAILSNEKFRGVRLHLTTNLLHITANNPEQEEA 303
>gi|424065240|ref|ZP_17802720.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
gi|408003585|gb|EKG43755.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
Length = 367
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 165/289 (57%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+LV +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLVVVEGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SL + I +++ + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLSNDALIDIKLDDSKLIVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
FTL Q L+ ++ F++AQQD+RYYLNG+LL + AV++DGHRL ++
Sbjct: 125 SLTFTLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILRAVATDGHRLAMCSMSA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D + + +I+PRK + + RLL ++ V + + + I+ SKL+DGKF D
Sbjct: 185 DIEHADRHQVIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKI 293
>gi|257464819|ref|ZP_05629190.1| DNA polymerase III subunit beta [Actinobacillus minor 202]
gi|257450479|gb|EEV24522.1| DNA polymerase III subunit beta [Actinobacillus minor 202]
Length = 367
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 108/308 (35%), Positives = 181/308 (58%), Gaps = 4/308 (1%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG-NSS 67
+ +L PLQ V ++ + LP++ N+L+ E++S TD EV++TT + N S
Sbjct: 7 REQLLRPLQQVCGVLASRPTLPVIGNLLLEVEGERLSMTGTDLEVELTTQAQLAQAVNFS 66
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ A+KF+DI +SLP+ ++I E IK+G+SKF+L TL A +YP + ++
Sbjct: 67 EKFTIPAKKFLDIAKSLPDDSVISIAFEADKAVIKAGRSKFSLATLPASDYPNL-MDWTP 125
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ +F++ Q TL +++ FS+A QD RY+LNG+ + + V++DGHRL + +
Sbjct: 126 EVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRLAVCTMAL 185
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
++ +S S +I+PRK V L RL+ + V L+I ++ I+I + I SKLIDG+F D
Sbjct: 186 TQELASHS-VIVPRKAVLELSRLVSTSHDIVRLEIGSSNIRISMNGIVFTSKLIDGRFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKAS 307
Y+ V+ ++ + L R+L R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 245 YRRVLPRNADRILEADTETLKRALMRAAILSNEKFRGVRLSLSDNILKITANNPEQEEAE 304
Query: 308 S-TDLIYH 314
D+ Y
Sbjct: 305 EIIDVAYQ 312
>gi|359279798|dbj|BAL37277.1| DNA polymerase III beta chain, partial [Xenorhabdus sp. SF87]
Length = 331
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 171/286 (59%), Gaps = 2/286 (0%)
Query: 21 SIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDI 80
S + + LPIL N+L+ + TD E+++ + + V ARKF DI
Sbjct: 2 SPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMKARVTLTQPHEQGATTVPARKFFDI 61
Query: 81 LRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKC 140
R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF+L Q TLK
Sbjct: 62 WRGLPDGAEISVELDGDRILVRSGRSRFSLSTLPASDFPNLD-DWQSEVEFSLPQATLKR 120
Query: 141 ILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIP 200
++ FS+A QD+RYYLNG+L + + + V++DGHRL +NI + S S +I+P
Sbjct: 121 LIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMNIGQNLPSHS-VIVP 179
Query: 201 RKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVISNKYEKSF 260
RK V L RLL+ +NP++L+I +N I+ + SKL+DG+F DY+ V+ +K+
Sbjct: 180 RKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKTL 239
Query: 261 LVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 240 EANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEA 285
>gi|416067977|ref|ZP_11582565.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|348001453|gb|EGY42195.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
Length = 366
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 180/306 (58%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ +++ E +L PLQ V ++ + +P+L+N+L+ + +++ TD EV+++T T
Sbjct: 1 MQFIISREN--LLKPLQQVCGVLNSRPNIPVLNNVLLQIENNQLNITGTDLEVELSTQTP 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + A+KF+D+ RSLP+ ++T+ E ++S +SKF L TL A++YP
Sbjct: 59 LLHAEHDGKFTIPAKKFLDLCRSLPDNAEITVTFEEDRAIVRSDRSKFNLSTLPAEDYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+T + + + +FTL Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHRL
Sbjct: 119 LT-DWQSEVDFTLEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ +++ + S +I+PRK V L RLLE + P L+I N ++I +NI SKL
Sbjct: 178 AVCTIPLEQDLQTHS-VILPRKGVLELARLLEPSDQPARLQIGTNNLRIQLNNITFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ + L ++ R +I+SN++ + VRL + N LKIT ++
Sbjct: 237 IDGRFPDYRRVLPRNATRIVEAGWETLKQAFVRAAILSNERFRSVRLQLSENQLKITATN 296
Query: 301 SNREKA 306
+E A
Sbjct: 297 PEQEVA 302
>gi|410629277|ref|ZP_11339981.1| DNA polymerase III subunit beta [Glaciecola mesophila KMM 241]
gi|410151073|dbj|GAC26750.1| DNA polymerase III subunit beta [Glaciecola mesophila KMM 241]
Length = 367
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 103/294 (35%), Positives = 179/294 (60%), Gaps = 1/294 (0%)
Query: 13 LHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIV 72
L PLQ+V VE+++ LPILSN+L+ + + TD EV++ + + I V
Sbjct: 11 LQPLQLVSGAVERRHTLPILSNVLIKVSDNALWLTGTDLEVELISNVTLTGDFEEGEITV 70
Query: 73 AARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFT 132
A+K +DI+R L E +++ +++ ++ G+SK++L TL A +YP + + + + EF
Sbjct: 71 PAKKLLDIIRGLTEGSEISFHVDGNKAILRCGRSKYSLSTLSANDYPNLE-DWQGELEFE 129
Query: 133 LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFS 192
+SQ LK +++ V+FS+AQQD+RYYLNG+ L + I V++DGHRL ++N
Sbjct: 130 ISQSNLKRLIDSVHFSMAQQDVRYYLNGMSLETEDNVIRTVATDGHRLALCRLNYTDATL 189
Query: 193 SCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVI 252
+IIPRK V + RL+E+ + +++++ +N I+I ++ SKL+DG+F DY+ V+
Sbjct: 190 PNRQVIIPRKGVMEITRLIEDSDKSLKVQVGSNHIRIFSNDFIFTSKLVDGRFPDYRRVL 249
Query: 253 SNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+K+ + ++ L + R SI+SN+K KGVRL + +KIT ++ +E+A
Sbjct: 250 PKDGDKNIIASKLGLKNAFSRASILSNEKFKGVRLNLSSGEVKITANNPEQEEA 303
>gi|88705399|ref|ZP_01103110.1| DNA polymerase III, beta chain [Congregibacter litoralis KT71]
gi|88700489|gb|EAQ97597.1| DNA polymerase III, beta chain [Congregibacter litoralis KT71]
Length = 367
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 176/301 (58%), Gaps = 1/301 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
++A+L PL +V +VE++ LP+LSN+L+ + +++S TD EV++ + +
Sbjct: 7 RDALLKPLNLVAGVVERRQTLPVLSNVLLNLDGDRLSITGTDLEVELVGRVNLETAGEAG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
I V ARK DI +SLP+ + I + + ++SG+S+FTL TL A+E+P + +S
Sbjct: 67 EITVPARKLADICKSLPDGADLEIAVADGKATVRSGRSRFTLATLPAREFPNIE-DSIGT 125
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
+FTL Q L+ ++ F++AQQD+RYYLNG+ + + AV++DGHRL
Sbjct: 126 HQFTLKQGQLRRLIERTGFAMAQQDVRYYLNGMYWELRAGRLRAVATDGHRLAICTFPGT 185
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
K + +I+PRK V L RL+++ + V + + +N ++ + SKL+DGKF DY
Sbjct: 186 LKDLEDTQVILPRKGVLELSRLMQSDDEDVTIILGSNHLRATTAEFTFTSKLVDGKFPDY 245
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASS 308
+ V+ +K +R +L ++ R +I+SN+K +GVRL + L+I ++ +E+A
Sbjct: 246 ERVLPRAADKIVQSSRTELRQAFTRTAILSNEKYRGVRLKLSEGSLEIVANNPEQEQAEE 305
Query: 309 T 309
+
Sbjct: 306 S 306
>gi|119471659|ref|ZP_01614044.1| DNA polymerase III, beta-subunit; processivity clamp of DNA
polymerase III [Alteromonadales bacterium TW-7]
gi|359450318|ref|ZP_09239772.1| DNA polymerase III subunit beta [Pseudoalteromonas sp. BSi20480]
gi|392540099|ref|ZP_10287236.1| DNA polymerase III subunit beta [Pseudoalteromonas marina mano4]
gi|119445438|gb|EAW26725.1| DNA polymerase III, beta-subunit; processivity clamp of DNA
polymerase III [Alteromonadales bacterium TW-7]
gi|358043867|dbj|GAA76021.1| DNA polymerase III subunit beta [Pseudoalteromonas sp. BSi20480]
Length = 367
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 180/302 (59%), Gaps = 7/302 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ+ ++ ++ L PL V +E+K+ LPILSN+L+ + ++S TD E+++ +
Sbjct: 1 MQITISRQQ--FLKPLVQVSGAIERKHTLPILSNVLLVVENGQLSMTGTDLEIELVSGVF 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
VG + + + A+K +DI +SLPE +T+ +++ + + SGKS+F+L TL A ++P
Sbjct: 59 VGDDIADTKLTLPAKKLLDICKSLPEGSDITLSLQDHQLLLTSGKSRFSLTTLSAADFPN 118
Query: 121 MTLNSKYD--FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGH 178
+ ++D EF L++ L+ +L +FS+A QD+RYYLNG+ +I V++DGH
Sbjct: 119 L---EEWDGEVEFQLTRLELRKLLESTHFSMANQDVRYYLNGMSFEVDNSDIKTVATDGH 175
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL Q + + ++ +IIPRK V + RL+ + V ++ N I+II S
Sbjct: 176 RLAIAQKKLTQSLNTQRQLIIPRKGVQEIMRLMVADDELVTIQFGANHIRIIDIEFTFTS 235
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KL+DG+F DY+ V+ +K+ + NR L + QR+SI+SN+K +GVRL + LKIT
Sbjct: 236 KLVDGRFPDYRRVLPRGGDKTIIANREWLRNAFQRVSILSNEKFRGVRLNLSNGLLKITA 295
Query: 299 SS 300
++
Sbjct: 296 NN 297
>gi|444346737|ref|ZP_21154700.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|443541293|gb|ELT51735.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
Length = 366
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 179/306 (58%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ +++ E +L PLQ V ++ + +P+L+N+L+ + +++ TD EV+++T T
Sbjct: 1 MQFIISREN--LLKPLQQVCGVLNSRPNIPVLNNVLLQIENNQLNITGTDLEVELSTQTP 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + A+KF+DI RSLP+ ++ + E ++S +SKF L TL A++YP
Sbjct: 59 LLHAEQDGKFTIPAKKFLDICRSLPDNAEIAVTFEEDRAIVRSDRSKFNLSTLPAEDYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+T + + + +FTL Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHRL
Sbjct: 119 LT-DWQSEVDFTLEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ +++ + S +I+PRK V L RLLE + P L+I N ++I +NI SKL
Sbjct: 178 AVCTIPLEQDLQTHS-VILPRKGVLELARLLEPSDQPARLQIGTNNLRIQLNNITFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ + L ++ R +I+SN++ + VRL + N LKIT ++
Sbjct: 237 IDGRFPDYRRVLPRNATRIVEAGWETLKQAFVRAAILSNERFRSVRLQLSENQLKITATN 296
Query: 301 SNREKA 306
+E A
Sbjct: 297 PEQEVA 302
>gi|261868624|ref|YP_003256546.1| DNA polymerase III subunit beta [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|365966377|ref|YP_004947939.1| DNA polymerase III subunit beta [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|415769774|ref|ZP_11484445.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|416074198|ref|ZP_11584462.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|416087419|ref|ZP_11587661.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|416108306|ref|ZP_11590981.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|444344753|ref|ZP_21152949.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|261413956|gb|ACX83327.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348004397|gb|EGY44907.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|348006949|gb|EGY47311.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|348009675|gb|EGY49797.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|348657252|gb|EGY74847.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|365745290|gb|AEW76195.1| DNA polymerase III subunit beta [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|443543432|gb|ELT53664.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
Length = 367
Score = 203 bits (517), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 179/306 (58%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ +++ E +L PLQ V ++ + +P+L+N+L+ + +++ TD EV+++T T
Sbjct: 2 MQFIISREN--LLKPLQQVCGVLNSRPNIPVLNNVLLQIENNQLNITGTDLEVELSTQTP 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + A+KF+DI RSLP+ ++ + E ++S +SKF L TL A++YP
Sbjct: 60 LLHAEQDGKFTIPAKKFLDICRSLPDNAEIAVTFEEDRAIVRSDRSKFNLSTLPAEDYPN 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+T + + + +FTL Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHRL
Sbjct: 120 LT-DWQSEVDFTLEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ +++ + S +I+PRK V L RLLE + P L+I N ++I +NI SKL
Sbjct: 179 AVCTIPLEQDLQTHS-VILPRKGVLELARLLEPSDQPARLQIGTNNLRIQLNNITFTSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ + L ++ R +I+SN++ + VRL + N LKIT ++
Sbjct: 238 IDGRFPDYRRVLPRNATRIVEAGWETLKQAFVRAAILSNERFRSVRLQLSENQLKITATN 297
Query: 301 SNREKA 306
+E A
Sbjct: 298 PEQEVA 303
>gi|410085819|ref|ZP_11282534.1| DNA polymerase III beta subunit [Morganella morganii SC01]
gi|421493130|ref|ZP_15940488.1| DNAN [Morganella morganii subsp. morganii KT]
gi|455737644|ref|YP_007503910.1| DNA polymerase III beta subunit [Morganella morganii subsp.
morganii KT]
gi|400192758|gb|EJO25896.1| DNAN [Morganella morganii subsp. morganii KT]
gi|409767764|gb|EKN51838.1| DNA polymerase III beta subunit [Morganella morganii SC01]
gi|455419207|gb|AGG29537.1| DNA polymerase III beta subunit [Morganella morganii subsp.
morganii KT]
Length = 366
Score = 203 bits (517), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 179/307 (58%), Gaps = 3/307 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + + TD E+++ + + +
Sbjct: 6 EREQLLKPLQQVSSPLGGRPTLPILGNLLLKVSDGVLHLTGTDLEMEMMAAVPLDQPHEN 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF+DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GETTVPARKFLDIWRGLPDGAQISVELDGDRLLVRSGRSRFSLSTLPASDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
D F+L Q TLK ++ FS+A QD+RYYLNG+L + V++DGHRL ++I
Sbjct: 125 DVTFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETSGSVLRTVATDGHRLAVCSLDI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
++ S +I+PRK V L RLL+ + ++L+I +N I+ SKL+DG+F D
Sbjct: 185 GQELPDHS-VIVPRKGVIELMRLLDGGDALLKLEIGSNNIRAHVGGFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKAS 307
Y+ V+ +K+ N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLTANCDMLKQAFSRAAILSNEKFRGVRIYLSNNQLRITANNPEQEEAE 303
Query: 308 S-TDLIY 313
D+ Y
Sbjct: 304 EIVDVTY 310
>gi|121998016|ref|YP_001002803.1| DNA polymerase III subunit beta [Halorhodospira halophila SL1]
gi|121589421|gb|ABM62001.1| DNA polymerase III, beta subunit [Halorhodospira halophila SL1]
Length = 366
Score = 203 bits (517), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 169/290 (58%), Gaps = 4/290 (1%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ +L LQ ++ +VE++ LP+L NI V S+++ +TD EV++ Y +
Sbjct: 6 QREPLLAALQSIVGVVERRQTLPVLGNIRVEARSQQLQLTATDLEVELVAYLEANTKDEG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ I + ARK++DI R+LPE ++I +++ S+F+L TL A E+P + S
Sbjct: 66 V-ITLPARKWLDICRNLPEGASISIEANQDRATLRAASSRFSLATLPADEFP--EVESIG 122
Query: 128 DFE-FTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVN 186
D E + + L+ ++ +FS+AQ D+RYYLNGLLL AV++DGHRL + +
Sbjct: 123 DTEAVEIPRGELRRLIERTHFSMAQHDVRYYLNGLLLELTGSGARAVATDGHRLALAESD 182
Query: 187 IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFL 246
+ + +I+PRK V L RLL++ + P L+ N +++ ++ + SKLIDG F
Sbjct: 183 SPVQVAQPRQVIVPRKGVQELLRLLDDADEPATLEFGTNHVRVTLQSVRLTSKLIDGVFP 242
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
DY VI +K L++R L ++L R++I+SN+K +G+R ++ + L+I
Sbjct: 243 DYNRVIPQDGDKHVLIDRQYLRQALTRVAILSNEKYRGIRFAVEGDTLRI 292
>gi|431925212|ref|YP_007238246.1| DNA polymerase III subunit beta [Pseudomonas stutzeri RCH2]
gi|431823499|gb|AGA84616.1| DNA polymerase III, beta subunit [Pseudomonas stutzeri RCH2]
Length = 367
Score = 203 bits (517), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 168/289 (58%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ A+
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVALEDAAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP ++I ++++ + IKSG+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPSDALISIRLDDQKIVIKSGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
F++ Q L+ ++ F++AQQD+RYYLNG+L+ + AV++DGHRL +
Sbjct: 125 SLSFSVEQGKLRKLIERSSFAMAQQDVRYYLNGMLIEVSNGMLRAVATDGHRLAMCSMQA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ +I+PRK + L RLL +++ V + + + I+ SKL+DGKF D
Sbjct: 185 GIEQPDRHQVIVPRKGILELARLLNDQDAEVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R L + R +I+SN+K +G+RL ++ LKI
Sbjct: 245 YERVLPRGGDKLVVGDRQLLREAFSRTAILSNEKYRGIRLQLESGLLKI 293
>gi|357415873|ref|YP_004928893.1| DNA polymerase III subunit beta [Pseudoxanthomonas spadix BD-a59]
gi|355333451|gb|AER54852.1| DNA polymerase III subunit beta [Pseudoxanthomonas spadix BD-a59]
Length = 367
Score = 203 bits (517), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 172/292 (58%), Gaps = 3/292 (1%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A L PL V+++VE++ LP+L+N LV + ++S TD EV++ +AV
Sbjct: 6 QREAFLKPLAQVVNVVERRQTLPVLANFLVQVHDGQLSLTGTDLEVEMIARSAVEDAQDG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ ARK +I+R+LP+ ++T+ + + +G+S+FTL TL A ++P + +
Sbjct: 66 -ETTIPARKLFEIVRALPDGSRITVSQSGDKVSVAAGRSRFTLATLPANDFPSVD-EVEA 123
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
T+ + LK ++ F++AQQD+RYYLNGLL + + V++DGHRL + +
Sbjct: 124 SERVTVPEAALKELIERTSFAMAQQDVRYYLNGLLFDLRDSALRCVATDGHRLALCESGL 183
Query: 188 DKKFS-SCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFL 246
D S + II+PRK V LQRLLE E +EL++ + I++ ++ SKLIDG+F
Sbjct: 184 DTGTSLTKRQIIVPRKGVTELQRLLEGGERLLELELGRSHIRVKRDDVTFTSKLIDGRFP 243
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
DY+ VI + ++R L +LQR +I+SN+K +GVR+ + P +KI+
Sbjct: 244 DYEAVIPIGADIEVKLDREVLRAALQRAAILSNEKYRGVRVELSPGQMKISA 295
>gi|114319168|ref|YP_740851.1| DNA polymerase III subunit beta [Alkalilimnicola ehrlichii MLHE-1]
gi|114225562|gb|ABI55361.1| DNA polymerase III, beta subunit [Alkalilimnicola ehrlichii MLHE-1]
Length = 366
Score = 203 bits (517), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 170/294 (57%), Gaps = 4/294 (1%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
++ ++ +L PLQ +I +VE++ LP+L+N+ + +TD EV++
Sbjct: 3 IDIQREDLLKPLQAIIGVVERRQTLPVLANVRLELGDGLARLTATDLEVELVASLPCQVT 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP-IMTL 123
+I + ARK +DI R+LP+ ++ + ++ + +++G+S+FTL TL A +YP I +
Sbjct: 63 EGG-DITLPARKLLDICRNLPDQSQIQLQVDGERASLRAGRSRFTLATLSADDYPSIEDI 121
Query: 124 NSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
++ L Q L+ ++ +FS+A QD+RYYLNGL++ + V++DGHRL
Sbjct: 122 GARE--TVRLPQGQLRKLIERTHFSMAVQDVRYYLNGLMVELEPAMARMVATDGHRLALA 179
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDG 243
+ ID + +I+PRK V L RLL++ + +L++ +N I++ ++ SKLIDG
Sbjct: 180 EQAIDTGVEAPRQVIVPRKGVQELLRLLDHSDEGADLELGDNHIRVKLGDVRFTSKLIDG 239
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
+F DY+ V+ E VNR L +L R+SI+SN+K +GVR ++ LK+
Sbjct: 240 RFPDYRRVVPEATETPATVNREDLRHALLRVSILSNEKYRGVRFLLDGGTLKVA 293
>gi|421153063|ref|ZP_15612625.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa ATCC 14886]
gi|404524347|gb|EKA34696.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa ATCC 14886]
Length = 367
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 166/289 (57%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLEDAAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I +E + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
F+++Q L+ +++ F++AQQD+RYYLNG+LL + +V++DGHRL ++
Sbjct: 125 SLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMCSLDA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+I+PRK + L RLL ++ V + + + I+ SKL+DGKF D
Sbjct: 185 QIPSQDRHQVIVPRKGILELARLLPEQDGEVGIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R +L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKI 293
>gi|331007622|ref|ZP_08330764.1| DNA polymerase III beta subunit [gamma proteobacterium IMCC1989]
gi|330418562|gb|EGG93086.1| DNA polymerase III beta subunit [gamma proteobacterium IMCC1989]
Length = 369
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 106/281 (37%), Positives = 168/281 (59%), Gaps = 3/281 (1%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG-NSS 67
+ A+L PLQ+V +VE++ LP+L+N+LV +E +S TD EV+I + +
Sbjct: 7 REALLVPLQLVAGVVERRQTLPVLANVLVVLENETLSLTGTDLEVEIVARLPLENPVQDT 66
Query: 68 INIIVAARKFIDILRSLPETEKVT-IYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSK 126
I + A+K +DI RSLP+ V I E++ + +KSG+S+FTL TL + ++P T S+
Sbjct: 67 GEITIPAKKLVDICRSLPDGATVEFILQEDQKVIVKSGRSRFTLATLPSNDFP-STEKSE 125
Query: 127 YDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVN 186
D +F+ SQ +K +++ F++AQQD+RYYLNG+L + + V++DGHRL
Sbjct: 126 GDLQFSCSQSIIKRLIDRTAFAMAQQDVRYYLNGMLWEVEGNRLRCVATDGHRLAMCVRE 185
Query: 187 IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFL 246
+D S I+PRK V L RLL ++E ++L + + I++ N SKL+DGKF
Sbjct: 186 LDIDVPEKSQAILPRKGVIELSRLLNDQEAQIDLTLGTHHIRVDTPNYTFTSKLVDGKFP 245
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRL 287
DY+ V+ L NR +L ++ R +I+SN+K +GVRL
Sbjct: 246 DYERVLPKGGTNVVLGNRTELKQAFARTAILSNEKYRGVRL 286
>gi|152987905|ref|YP_001345398.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa PA7]
gi|150963063|gb|ABR85088.1| DNA polymerase III, beta subunit [Pseudomonas aeruginosa PA7]
Length = 367
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 166/289 (57%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLEDAAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I +E + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPSDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
F+++Q L+ +++ F++AQQD+RYYLNG+LL + +V++DGHRL ++
Sbjct: 125 SLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGALRSVATDGHRLAMCSLDA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+I+PRK + L RLL ++ V + + + I+ SKL+DGKF D
Sbjct: 185 QIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R +L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPRGGDKLVIGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKI 293
>gi|28867245|ref|NP_789864.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213968440|ref|ZP_03396583.1| DNA polymerase III, beta subunit [Pseudomonas syringae pv. tomato
T1]
gi|301384272|ref|ZP_07232690.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tomato
Max13]
gi|302063878|ref|ZP_07255419.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tomato
K40]
gi|302131961|ref|ZP_07257951.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|422659102|ref|ZP_16721531.1| DNA polymerase III subunit beta [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|28850479|gb|AAO53559.1| DNA polymerase III, beta subunit [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213926728|gb|EEB60280.1| DNA polymerase III, beta subunit [Pseudomonas syringae pv. tomato
T1]
gi|331017724|gb|EGH97780.1| DNA polymerase III subunit beta [Pseudomonas syringae pv.
lachrymans str. M302278]
Length = 367
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 165/289 (57%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I +++ + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDALIDIKLDDSKLIVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
F L Q L+ ++ F++AQQD+RYYLNG+LL + AV++DGHRL ++
Sbjct: 125 SLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILRAVATDGHRLAMCSMSA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D + + +I+PRK + + RLL ++ V + + + I+ SKL+DGKF D
Sbjct: 185 DIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQSLREAFSRTAILSNEKYRGIRLQLANGQLKI 293
>gi|374704469|ref|ZP_09711339.1| DNA polymerase III subunit beta [Pseudomonas sp. S9]
Length = 367
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 164/291 (56%), Gaps = 5/291 (1%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVTLEDAAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + +K+G+S+F+L TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPSDALIDIRVDEQKLLVKAGRSRFSLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY--YQV 185
F L Q L+ ++ F++AQQD+RYYLNG+LL Q + AV++DGHRL Q
Sbjct: 125 SLTFDLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVQTGILRAVATDGHRLAMCSMQA 184
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKF 245
ID +I+PRK + L RLL ++ V + + + I+ SKL+DGKF
Sbjct: 185 QIDN--VERHQVIVPRKGILELARLLTEQDGTVAIVLGQHHIRATTGEFTFTSKLVDGKF 242
Query: 246 LDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
DY+ V+ +K + +R L + R +I+SN+K +G+RL + LKI
Sbjct: 243 PDYERVLPRGGDKVVVADRQGLREAFSRTAILSNEKYRGIRLQLAAGLLKI 293
>gi|398961115|ref|ZP_10678513.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM30]
gi|398153066|gb|EJM41573.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM30]
Length = 367
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 164/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ + +++S TD EV++ + +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVDGQQLSLTGTDLEVELVGRVQLEEPAET 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GSITVPARKLMDICKSLPNDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+L Q L+ ++ F++AQQD+RYYLNG+LL I AV++DGHRL +
Sbjct: 125 SLTCSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGVIRAVATDGHRLAMCSMQA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL + V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKI 293
>gi|15595200|ref|NP_064722.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa PAO1]
gi|107098996|ref|ZP_01362914.1| hypothetical protein PaerPA_01000002 [Pseudomonas aeruginosa PACS2]
gi|116053722|ref|YP_788157.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa UCBPP-PA14]
gi|218888748|ref|YP_002437612.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa LESB58]
gi|254237755|ref|ZP_04931078.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa C3719]
gi|254243116|ref|ZP_04936438.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa 2192]
gi|296386474|ref|ZP_06875973.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa PAb1]
gi|313111476|ref|ZP_07797277.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa 39016]
gi|355650953|ref|ZP_09056381.1| DNA polymerase III subunit beta [Pseudomonas sp. 2_1_26]
gi|386056073|ref|YP_005972595.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa M18]
gi|386062975|ref|YP_005978279.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa NCGM2.S1]
gi|392981412|ref|YP_006479999.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa DK2]
gi|416856652|ref|ZP_11912216.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa 138244]
gi|416873282|ref|ZP_11917390.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa 152504]
gi|418587882|ref|ZP_13151903.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa MPAO1/P1]
gi|418591611|ref|ZP_13155507.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa MPAO1/P2]
gi|419757373|ref|ZP_14283716.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa
PADK2_CF510]
gi|420142745|ref|ZP_14650331.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa CIG1]
gi|421164127|ref|ZP_15622780.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa ATCC 25324]
gi|421171587|ref|ZP_15629442.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa ATCC
700888]
gi|421177835|ref|ZP_15635480.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa CI27]
gi|421183698|ref|ZP_15641147.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa E2]
gi|421514608|ref|ZP_15961294.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa PAO579]
gi|424943621|ref|ZP_18359384.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa NCMG1179]
gi|451983654|ref|ZP_21931930.1| DNA polymerase III beta subunit [Pseudomonas aeruginosa 18A]
gi|13959347|sp|Q9I7C4.1|DPO3B_PSEAE RecName: Full=DNA polymerase III subunit beta
gi|9945820|gb|AAG03392.1|AE004440_2 DNA polymerase III, beta chain [Pseudomonas aeruginosa PAO1]
gi|115588943|gb|ABJ14958.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa UCBPP-PA14]
gi|126169686|gb|EAZ55197.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa C3719]
gi|126196494|gb|EAZ60557.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa 2192]
gi|218768971|emb|CAW24729.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa LESB58]
gi|310883779|gb|EFQ42373.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa 39016]
gi|334841640|gb|EGM20265.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa 138244]
gi|334845253|gb|EGM23819.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa 152504]
gi|346060067|dbj|GAA19950.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa NCMG1179]
gi|347302379|gb|AEO72493.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa M18]
gi|348031534|dbj|BAK86894.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa NCGM2.S1]
gi|354826477|gb|EHF10689.1| DNA polymerase III subunit beta [Pseudomonas sp. 2_1_26]
gi|375041394|gb|EHS34095.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa MPAO1/P1]
gi|375049670|gb|EHS42161.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa MPAO1/P2]
gi|384396172|gb|EIE42592.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa
PADK2_CF510]
gi|392316917|gb|AFM62297.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa DK2]
gi|403244521|gb|EJY58391.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa CIG1]
gi|404348336|gb|EJZ74673.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa PAO579]
gi|404519788|gb|EKA30506.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa ATCC
700888]
gi|404525994|gb|EKA36234.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa ATCC 25324]
gi|404528697|gb|EKA38760.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa CI27]
gi|404539792|gb|EKA49239.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa E2]
gi|451758600|emb|CCQ84453.1| DNA polymerase III beta subunit [Pseudomonas aeruginosa 18A]
gi|453044712|gb|EME92434.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa PA21_ST175]
Length = 367
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 166/289 (57%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLEDAAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I +E + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
F+++Q L+ +++ F++AQQD+RYYLNG+LL + +V++DGHRL ++
Sbjct: 125 SLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMCSLDA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+I+PRK + L RLL ++ V + + + I+ SKL+DGKF D
Sbjct: 185 QIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R +L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKI 293
>gi|404400599|ref|ZP_10992183.1| DNA polymerase III subunit beta [Pseudomonas fuscovaginae UPB0736]
Length = 367
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 161/289 (55%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+L Q L+ ++ F++AQQD+RYYLNG+LL I AV++DGHRL +
Sbjct: 125 SLTCSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGVIRAVATDGHRLAMCSMQA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL E V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQPDRHQVIVPRKGILELARLLTEPEGNVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKI 293
>gi|418295068|ref|ZP_12906942.1| DNA polymerase III subunit beta [Pseudomonas stutzeri ATCC 14405 =
CCUG 16156]
gi|379066425|gb|EHY79168.1| DNA polymerase III subunit beta [Pseudomonas stutzeri ATCC 14405 =
CCUG 16156]
Length = 367
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 168/289 (58%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ A+
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVQEQQLSLTGTDLEVELVGRVALEDAAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++++ + IKSG+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPSDALINIRLDDQKVIIKSGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
F+++Q L+ ++ F++AQQD+RYYLNG+L+ + AV++DGHRL +
Sbjct: 125 SLSFSVAQGKLRKLIERSSFAMAQQDVRYYLNGMLIEVSSGMLRAVATDGHRLAMCSMQA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ +I+PRK + L RLL +++ V + + + I+ SKL+DGKF D
Sbjct: 185 GIEQPDRHQVIVPRKGILELARLLNDQDAEVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R L + R +I+SN+K +G+RL ++ LKI
Sbjct: 245 YERVLPRGGDKLVVGDRQLLREAFSRTAILSNEKYRGIRLQLESGLLKI 293
>gi|398976391|ref|ZP_10686297.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM25]
gi|398139227|gb|EJM28228.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM25]
Length = 367
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 164/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ + +++S TD EV++ + +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVDGQQLSLTGTDLEVELVGRVQLEEPAET 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GSITVPARKLMDICKSLPNDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+L Q L+ ++ F++AQQD+RYYLNG+LL I AV++DGHRL +
Sbjct: 125 SLTTSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSTGVIRAVATDGHRLAMCSMQA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL + V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQQERHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKI 293
>gi|77456230|ref|YP_345735.1| DNA polymerase III subunit beta [Pseudomonas fluorescens Pf0-1]
gi|77380233|gb|ABA71746.1| DNA polymerase III, beta chain [Pseudomonas fluorescens Pf0-1]
Length = 367
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 164/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ + +++S TD EV++ + +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVDGQQLSLTGTDLEVELVGRVQLEEPAET 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GSITVPARKLMDICKSLPNDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+L Q L+ ++ F++AQQD+RYYLNG+LL I AV++DGHRL +
Sbjct: 125 SLTTSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSTGVIRAVATDGHRLAMCSMQA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL + V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQQDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKI 293
>gi|325275333|ref|ZP_08141284.1| DNA polymerase III subunit beta [Pseudomonas sp. TJI-51]
gi|324099524|gb|EGB97419.1| DNA polymerase III subunit beta [Pseudomonas sp. TJI-51]
Length = 367
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 162/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDALIDIKVDEQKLLLKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
L Q L+ ++ F++AQQD+RYYLNG+LL + + AVS+DGHRL +
Sbjct: 125 SLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLRAVSTDGHRLALCSMTA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ +I+PRK + L RLL + E V + + + I+ SKL+DGKF D
Sbjct: 185 PIEQDDRHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R L + R SI+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKVVVGDRQALREAFSRTSILSNEKYRGIRLQLAAGQLKI 293
>gi|406902770|gb|EKD45055.1| hypothetical protein ACD_70C00094G0001, partial [uncultured
bacterium]
Length = 311
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 183/302 (60%), Gaps = 2/302 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG-YGNSS 67
+ +L PLQ+VI V+ K +PILSN+L+ +++K+S TD E+++ ++ V + S
Sbjct: 7 REQLLKPLQLVIGAVDHKQAMPILSNVLLNVDTKKLSVTGTDLEIELVGHSIVPEFTESH 66
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ + ARK DI ++LPE + +Y E + ++S +S+FT+ TL A ++P + +++
Sbjct: 67 ARMTLPARKLFDICKALPECSPIELYQEKDRVILRSDRSRFTMATLPADDFPSVE-STEA 125
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
FTLSQ L +L+ F++A+QD+RYYLNG+L+ + + V++DGHRL Q +
Sbjct: 126 KLTFTLSQGALSELLHRTAFAMAEQDVRYYLNGMLMEIAENTLRVVATDGHRLALNQSAV 185
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+P K V L RLL+ ++ + +++ + I+++ + SKL++G+F D
Sbjct: 186 DIVKPHRLQMIVPYKAVLELMRLLKEPDSLLTVQVGLHHIRMVSQDFVFTSKLVEGRFPD 245
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKAS 307
Y+ VI +K+ LV+R+ L ++L R +I+ +DK++GVR +K L++ ++ E A
Sbjct: 246 YQRVIPKMGDKAVLVDRDVLKQALLRTAILCHDKVRGVRFELKSGSLQMFAHNTEHEAAE 305
Query: 308 ST 309
T
Sbjct: 306 ET 307
>gi|66043273|ref|YP_233114.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. syringae
B728a]
gi|302185841|ref|ZP_07262514.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. syringae
642]
gi|422665978|ref|ZP_16725848.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. aptata
str. DSM 50252]
gi|440719856|ref|ZP_20900279.1| DNA polymerase III subunit beta [Pseudomonas syringae BRIP34876]
gi|440728139|ref|ZP_20908358.1| DNA polymerase III subunit beta [Pseudomonas syringae BRIP34881]
gi|443640733|ref|ZP_21124583.1| DNA polymerase III, beta subunit [Pseudomonas syringae pv. syringae
B64]
gi|63253980|gb|AAY35076.1| DNA polymerase III, beta subunit [Pseudomonas syringae pv. syringae
B728a]
gi|330976403|gb|EGH76460.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. aptata
str. DSM 50252]
gi|440362246|gb|ELP99446.1| DNA polymerase III subunit beta [Pseudomonas syringae BRIP34881]
gi|440367096|gb|ELQ04165.1| DNA polymerase III subunit beta [Pseudomonas syringae BRIP34876]
gi|443280750|gb|ELS39755.1| DNA polymerase III, beta subunit [Pseudomonas syringae pv. syringae
B64]
Length = 367
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 165/289 (57%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SL + I +++ + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLSNDALIDIKLDDSKLIVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
FTL Q L+ ++ F++AQQD+RYYLNG+LL + AV++DGHRL ++
Sbjct: 125 SLTFTLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILRAVATDGHRLAMCSMSA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D + + +I+PRK + + RLL ++ V + + + I+ SKL+DGKF D
Sbjct: 185 DIEHADRHQVIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKI 293
>gi|374622872|ref|ZP_09695392.1| DNA polymerase III subunit beta [Ectothiorhodospira sp. PHS-1]
gi|373941993|gb|EHQ52538.1| DNA polymerase III subunit beta [Ectothiorhodospira sp. PHS-1]
Length = 366
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 174/291 (59%), Gaps = 6/291 (2%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ +L PLQ VI VEK++ + ILSN+L+ + + +TD EV++ + Y +
Sbjct: 6 QREVLLKPLQQVIGAVEKRHTMQILSNVLLRCDGTHLKITATDLEVELVA--ELEYASEE 63
Query: 68 IN-IIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP-IMTLNS 125
+ + ARK +DI R+LP+ ++ I + + + SG+S+F L TL A ++P + + S
Sbjct: 64 TGEVTLPARKLLDICRALPDEAEIRIQVSGERAVLSSGRSRFVLTTLPAGDFPNLDEIES 123
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
+ EF+L+++ L ++ F++A QD RYYLNGL+L +K I V++DGHRL+ +
Sbjct: 124 R--IEFSLTERELLTLIGRTSFAMANQDARYYLNGLMLEVEKGTIRTVATDGHRLSLCTL 181
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKF 245
+ +IIPRK V L RLLE+ ++PV ++I+ N +++ + +KLIDG+F
Sbjct: 182 KSIVETEETQQVIIPRKGVLELSRLLEHSDDPVRIQIAANHLRVRVVGLCFTTKLIDGRF 241
Query: 246 LDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
DYK VI E+ V+R L ++L R +I+SN+K +GVR + P LKI
Sbjct: 242 PDYKRVIPRDGEQVLKVDRELLRQALGRTAILSNEKYRGVRFELSPGTLKI 292
>gi|110832863|ref|YP_691722.1| DNA polymerase III subunit beta [Alcanivorax borkumensis SK2]
gi|110645974|emb|CAL15450.1| DNA polymerase III, beta subunit [Alcanivorax borkumensis SK2]
Length = 366
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 167/296 (56%), Gaps = 4/296 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ +N E+ +L PLQ V ++VEK+ LP+LSN+L+ ++S TD E+++
Sbjct: 1 MKFSINREQ--LLKPLQQVAAVVEKRQTLPVLSNVLLEVGDGQLSMTGTDLELELVARLP 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ V ARK +DI +SLP + ++ + M ++SG+S+FTL TL A E+P
Sbjct: 59 LEGELEPGETTVPARKLVDIGKSLPAEADIRFEVDGERMLVRSGRSRFTLSTLPASEFPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ ++ + L+ +++ FS+AQQD+RYYLNG+L + + AV++DGHRL
Sbjct: 119 LEEDAAGS-SLEIKPDVLRGLIDRTAFSMAQQDVRYYLNGMLFELKSGRLRAVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+D S +I+PRK V L R+L + L I N ++I+ I SKL
Sbjct: 178 ALCDAELDVPVEEAS-VILPRKGVMELSRILGDSGEVARLTIGRNHVRIVVGAITFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
+DGKF +Y VI + + + +R L ++L R++I+SN+K +GVR+ + L+I
Sbjct: 237 VDGKFPEYDRVIPKEGSRKVVADRETLRQALARVAILSNEKYRGVRVQLSEGSLRI 292
>gi|398868357|ref|ZP_10623756.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM78]
gi|398233327|gb|EJN19261.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM78]
Length = 367
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 163/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ + +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPAET 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GSITVPARKLMDICKSLPNDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+L Q L+ ++ F++AQQD+RYYLNG+LL I AV++DGHRL +
Sbjct: 125 SLTCSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGVIRAVATDGHRLAMCSMQA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL + V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQPDRHQVIVPRKGILELARLLTEPDGIVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLKI 293
>gi|398845100|ref|ZP_10602145.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM84]
gi|398253872|gb|EJN38984.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM84]
Length = 367
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 163/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDVLIDIKVDEQKLLVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
L Q L+ ++ F++AQQD+RYYLNG+LL + + AVS+DGHRL ++
Sbjct: 125 SLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLRAVSTDGHRLALCSMSA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ +I+PRK + L RLL + E V + + + I+ SKL+DGKF D
Sbjct: 185 AIEQDERHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLKI 293
>gi|90415377|ref|ZP_01223311.1| DNA polymerase III, beta subunit [gamma proteobacterium HTCC2207]
gi|90332700|gb|EAS47870.1| DNA polymerase III, beta subunit [marine gamma proteobacterium
HTCC2207]
Length = 366
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 172/288 (59%), Gaps = 2/288 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ A+L+PLQ+V+ +VE++ LPILSN+L+ + +++ TD EV+I + V + +
Sbjct: 7 REALLNPLQLVVGVVERRQTLPILSNVLLTLDGSRLAVTGTDLEVEIIGHADVVSADEAG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
+ V+ARKF+DI RSLPE + + + SG+S+FTL TL A E+P + N + +
Sbjct: 67 EVTVSARKFLDICRSLPEGANIKFSSSDGKAQVVSGRSRFTLATLPANEFPSVD-NGENN 125
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
+F ++ LK +++ F++AQQD+RYYLNG+L + AV++DGHR+ +
Sbjct: 126 IQFDIAGVILKNLIDATSFAMAQQDVRYYLNGMLWEVSANKLRAVATDGHRMALCDAECN 185
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ + I+PRK V L RL+ + E V + + +N I++ S+ SKL+DG + DY
Sbjct: 186 IEIGELTKAILPRKGVIELSRLVAD-EGVVRVAMGSNHIRVDGSDYCFTSKLVDGAYPDY 244
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
V+ +K NR +L ++ R +I+SN+K +GVR+++ +K+
Sbjct: 245 DRVLPKGGDKLVEGNRAELKQAFGRTAILSNEKYRGVRIMLSNGAIKM 292
>gi|424069909|ref|ZP_17807351.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
gi|408001633|gb|EKG41928.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
Length = 367
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 165/289 (57%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SL + I +++ + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLSNDALIDIKLDDSKLIVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
FTL Q L+ ++ F++AQQD+RYYLNG+LL + AV++DGHRL ++
Sbjct: 125 SLTFTLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILRAVATDGHRLAMCSMSA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D + + +I+PRK + + RLL ++ V + + + I+ SKL+DGKF D
Sbjct: 185 DIEHADRHQVIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQTLREAFSRTAILSNEKYRGIRLQLASGQLKI 293
>gi|424920628|ref|ZP_18343989.1| DNA polymerase III, beta subunit [Pseudomonas fluorescens R124]
gi|404301788|gb|EJZ55750.1| DNA polymerase III, beta subunit [Pseudomonas fluorescens R124]
Length = 367
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 164/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ + +++S TD EV++ + +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVDGQQLSLTGTDLEVELVGRVQLEEPAET 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GSITVPARKLMDICKSLPNDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+L Q L+ ++ F++AQQD+RYYLNG+LL I AV++DGHRL +
Sbjct: 125 SLTCSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGVIRAVATDGHRLAMCSMQA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL + V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKI 293
>gi|54307246|ref|YP_128266.1| DNA polymerase III subunit beta [Photobacterium profundum SS9]
gi|46911666|emb|CAG18464.1| Putative DNA polymerase III, beta chain [Photobacterium profundum
SS9]
Length = 366
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 177/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL NIL+ +S TD EV++ A+
Sbjct: 6 EREHLLKPLQQVSGALGGRPSLPILGNILLKVEEGYLSMTGTDLEVELIAKLALEADFEV 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ V +RKF+DI R LP+ K+ + +E + I+SG+S+++L TL A ++P + + +
Sbjct: 66 GAVTVPSRKFLDICRGLPDGAKIAVTLEGDRILIRSGRSRYSLSTLPAADFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
D EFTL Q + ++ FS+A QD+RYYLNG+L ++ +V++DGHR+ +++
Sbjct: 125 DVEFTLPQGRMSQLIQSTQFSMAHQDVRYYLNGMLFETDGSHLRSVATDGHRMAVCAIDL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
++ ++ II+PRK V L RLL+N E V+++I N+ I+ +N SKL+DG+F D
Sbjct: 185 AQELTT-KQIIVPRKGVLELVRLLDNAEAMVDIQIGNSNIRATVNNFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K + ++L ++ R +I+SN+K +GVR+ + ++IT ++ +E+A
Sbjct: 244 YRRVMPQSSNKFVEASCDELRKAFSRAAILSNEKFRGVRVNLSKGEMRITANNPEQEEA 302
>gi|398989711|ref|ZP_10692944.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM24]
gi|399012797|ref|ZP_10715115.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM16]
gi|398115041|gb|EJM04836.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM16]
gi|398146937|gb|EJM35661.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM24]
Length = 367
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 164/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ + +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPAET 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GSITVPARKLMDICKSLPNDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+L Q L+ ++ F++AQQD+RYYLNG+LL + I AV++DGHRL +
Sbjct: 125 SLTCSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSEGIIRAVATDGHRLAMCSMKA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL + V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKI 293
>gi|26986756|ref|NP_742181.1| DNA polymerase III subunit beta [Pseudomonas putida KT2440]
gi|148545261|ref|YP_001265363.1| DNA polymerase III subunit beta [Pseudomonas putida F1]
gi|386009713|ref|YP_005927990.1| DnaN protein [Pseudomonas putida BIRD-1]
gi|395446367|ref|YP_006386620.1| DNA polymerase III subunit beta [Pseudomonas putida ND6]
gi|397693641|ref|YP_006531521.1| DNA polymerase III subunit beta [Pseudomonas putida DOT-T1E]
gi|421523137|ref|ZP_15969768.1| DNA polymerase III subunit beta [Pseudomonas putida LS46]
gi|60392201|sp|P0A120.1|DPO3B_PSEPK RecName: Full=DNA polymerase III subunit beta
gi|60392202|sp|P0A121.1|DPO3B_PSEPU RecName: Full=DNA polymerase III subunit beta
gi|24981347|gb|AAN65645.1|AE016191_2 DNA polymerase III, beta subunit [Pseudomonas putida KT2440]
gi|45691|emb|CAA32894.1| unnamed protein product [Pseudomonas putida]
gi|148509319|gb|ABQ76179.1| DNA polymerase III, beta subunit [Pseudomonas putida F1]
gi|313496419|gb|ADR57785.1| DnaN [Pseudomonas putida BIRD-1]
gi|388560364|gb|AFK69505.1| DNA polymerase III subunit beta [Pseudomonas putida ND6]
gi|397330371|gb|AFO46730.1| DNA polymerase III subunit beta [Pseudomonas putida DOT-T1E]
gi|402752958|gb|EJX13461.1| DNA polymerase III subunit beta [Pseudomonas putida LS46]
Length = 367
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 163/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDALIDIKVDEQKLLVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
L Q L+ ++ F++AQQD+RYYLNG+LL + + AVS+DGHRL ++
Sbjct: 125 SLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLRAVSTDGHRLALCSMSA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ +I+PRK + L RLL + E V + + + I+ SKL+DGKF D
Sbjct: 185 PIEQEDRHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVVGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLKI 293
>gi|374621118|ref|ZP_09693652.1| DNA polymerase III, beta subunit [gamma proteobacterium HIMB55]
gi|374304345|gb|EHQ58529.1| DNA polymerase III, beta subunit [gamma proteobacterium HIMB55]
Length = 369
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/305 (33%), Positives = 179/305 (58%), Gaps = 11/305 (3%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
++A++ PL +V +VE++ LPILSN+L+ ++S TD EV++ V
Sbjct: 7 RDALIKPLNLVAGVVERRQTLPILSNVLLSLEGNRLSLTGTDLEVELVGRIEVVNSGPDG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
+I V ARK +DI +SLP+ ++ +E+ + +K+G+S+FTL TL A E+P + + +
Sbjct: 67 DITVPARKLVDICKSLPDGVDISFSVEDGRVTVKAGRSRFTLSTLPAAEFPTVEAG-EGE 125
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY----YQ 184
+ LSQ ++ ++ F++AQQD+RYYLNG+ L + + V++DGHRL +
Sbjct: 126 VDLELSQSLVRQMIERTGFAMAQQDVRYYLNGMYLEIKAGRLRFVATDGHRLALCTAPGE 185
Query: 185 VNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGK 244
++ D K +I+PRK + L RLL+ + V L + +N I+ SKL+DGK
Sbjct: 186 LSADDK-----SVIVPRKGILELARLLDG-DGSVTLTVGSNHIRAATDQFTFTSKLVDGK 239
Query: 245 FLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNRE 304
F +Y+ V+ +K+ +R++L ++ R +I+SN+K +GVRL + L+IT ++ +E
Sbjct: 240 FPEYERVLPKSPDKAVSGDRSELRQAFTRTAILSNEKYRGVRLSLSDGSLEITANNPEQE 299
Query: 305 KASST 309
+A +
Sbjct: 300 QAEES 304
>gi|339484951|ref|YP_004699479.1| DNA polymerase III subunit beta [Pseudomonas putida S16]
gi|421530579|ref|ZP_15977052.1| DNA polymerase III subunit beta [Pseudomonas putida S11]
gi|338835794|gb|AEJ10599.1| DNA polymerase III, beta subunit [Pseudomonas putida S16]
gi|402211951|gb|EJT83375.1| DNA polymerase III subunit beta [Pseudomonas putida S11]
Length = 367
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 163/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDALIDIKVDEQKLLVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
L Q L+ ++ F++AQQD+RYYLNG+LL + + AVS+DGHRL ++
Sbjct: 125 SLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLRAVSTDGHRLALCSMSA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ +I+PRK + L RLL + E V + + + I+ SKL+DGKF D
Sbjct: 185 PIEQDDRHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVVGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLKI 293
>gi|104779318|ref|YP_605816.1| DNA polymerase III subunit beta [Pseudomonas entomophila L48]
gi|95108305|emb|CAK12999.1| DNA polymerase III, beta chain [Pseudomonas entomophila L48]
Length = 367
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 164/291 (56%), Gaps = 5/291 (1%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPSDALIDIKVDEQKLLVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLT--YYQV 185
L Q L+ ++ F++AQQD+RYYLNG+LL + AV++DGHRL Q
Sbjct: 125 SLTCQLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSPGTLRAVATDGHRLALCAMQA 184
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKF 245
ID+ + +I+PRK + L RLL + E V + + + I+ SKL+DGKF
Sbjct: 185 PIDQ--ADRHQVIVPRKGILELARLLTDPEGTVSIVLGQHHIRATTGEFTFTSKLVDGKF 242
Query: 246 LDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
DY+ V+ +K + +R L + R +I+SN+K +G+RL + LKI
Sbjct: 243 PDYERVLPKGGDKLVIGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLKI 293
>gi|315125113|ref|YP_004067116.1| DNA polymerase III subunit beta [Pseudoalteromonas sp. SM9913]
gi|359438253|ref|ZP_09228289.1| DNA polymerase III subunit beta [Pseudoalteromonas sp. BSi20311]
gi|359446397|ref|ZP_09236074.1| DNA polymerase III subunit beta [Pseudoalteromonas sp. BSi20439]
gi|392557210|ref|ZP_10304347.1| DNA polymerase III subunit beta [Pseudoalteromonas undina NCIMB
2128]
gi|315013626|gb|ADT66964.1| DNA polymerase III subunit beta [Pseudoalteromonas sp. SM9913]
gi|358027092|dbj|GAA64538.1| DNA polymerase III subunit beta [Pseudoalteromonas sp. BSi20311]
gi|358039736|dbj|GAA72323.1| DNA polymerase III subunit beta [Pseudoalteromonas sp. BSi20439]
Length = 367
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 176/300 (58%), Gaps = 7/300 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ+ ++ E+ L PL V +E+K+ LPILSN+L+ + ++S TD E+++
Sbjct: 1 MQITISREQ--FLKPLVQVSGAIERKHTLPILSNVLLVVENGQLSMTGTDLEIELVASVF 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
VG + + + A+K +DI +SLP+ +T+ +++ + + SGKS+F+L TL A+++P
Sbjct: 59 VGDDVADTKLTLPAKKLLDICKSLPDGSDLTLSLQDHQLLLTSGKSRFSLTTLAAEDFPN 118
Query: 121 MTLNSKYD--FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGH 178
+ ++D EF L++ L+ +L +FS+A QD+RYYLNG+ +I V++DGH
Sbjct: 119 L---EQWDGEVEFQLTRLELRKLLESTHFSMANQDVRYYLNGMSFEVDNSDIKTVATDGH 175
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL Q + + ++ +IIPRK V + RL+ + V ++ N I+II S
Sbjct: 176 RLAIAQKQLGQSLNTQRQLIIPRKGVQEIMRLMVADQELVTIQFGANHIRIIDIEFTFTS 235
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KL+DG+F DY+ V+ +K NR L + QR+SI+SN+K +GVRL + LKIT
Sbjct: 236 KLVDGRFPDYRRVLPRGGDKVITANREWLRNAFQRVSILSNEKFRGVRLNLSNGLLKITA 295
>gi|398869683|ref|ZP_10625041.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM74]
gi|398891375|ref|ZP_10644751.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM55]
gi|398920326|ref|ZP_10659243.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM49]
gi|398926140|ref|ZP_10662301.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM48]
gi|398947760|ref|ZP_10672396.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM33]
gi|426406917|ref|YP_007027016.1| DNA polymerase III, beta subunit [Pseudomonas sp. UW4]
gi|398161672|gb|EJM49899.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM33]
gi|398168335|gb|EJM56356.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM49]
gi|398171177|gb|EJM59088.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM48]
gi|398187056|gb|EJM74410.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM55]
gi|398210532|gb|EJM97176.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM74]
gi|426265134|gb|AFY17211.1| DNA polymerase III, beta subunit [Pseudomonas sp. UW4]
Length = 367
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 162/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPADP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GSITVPARKLMDICKSLPNDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+L Q L+ ++ F++AQQD+RYYLNG+LL I AV++DGHRL +
Sbjct: 125 SLTCSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGVIRAVATDGHRLAMCSMQA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL + V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKI 293
>gi|254515868|ref|ZP_05127928.1| DNA polymerase III, beta subunit [gamma proteobacterium NOR5-3]
gi|219675590|gb|EED31956.1| DNA polymerase III, beta subunit [gamma proteobacterium NOR5-3]
Length = 367
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 175/298 (58%), Gaps = 1/298 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
++A+L PL +V +VE++ LP+LSN+L+ + +++S TD EV++ + +
Sbjct: 7 RDALLKPLNLVAGVVERRQTLPVLSNVLLNLDGDRLSITGTDLEVELVGRVNLESEGDAG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
I + ARK DI +SLP+ + I + + ++SG+S+FTL TL A+E+P + +S
Sbjct: 67 EITLPARKLADICKSLPDGADLEISVSDGKATVRSGRSRFTLATLPAREFPNIE-DSIGT 125
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
+FTL Q L+ ++ F++AQQD+RYYLNG+ + + AV++DGHRL
Sbjct: 126 HQFTLKQGQLRRLIERTGFAMAQQDVRYYLNGMYWELRAGRLRAVATDGHRLAICTFPGT 185
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
K + +I+PRK V L RL++N + V + + +N ++ + SKL+DGKF DY
Sbjct: 186 LKDLEDTQVILPRKGVLELSRLMQNDDEDVTIILGSNHLRATTTEFTFTSKLVDGKFPDY 245
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ V+ +K +R +L ++ R +I+SN+K +GVRL + L+I ++ +E+A
Sbjct: 246 ERVLPRAADKIVQSSRTELRQAFTRTAILSNEKYRGVRLKLSNGSLEIVANNPEQEQA 303
>gi|397685125|ref|YP_006522444.1| DNA polymerase III subunit beta [Pseudomonas stutzeri DSM 10701]
gi|395806681|gb|AFN76086.1| DNA polymerase III subunit beta [Pseudomonas stutzeri DSM 10701]
Length = 367
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 169/289 (58%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ A+ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVQDQQLSLTGTDLEVELVGRVALEDASEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP +++ ++ + + IKSG+S+F+L TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPADALISVRLDEQKVVIKSGRSRFSLSTLPANDFPAVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
F+++Q L+ ++ F++AQQD+RYYLNG+LL + AV++DGHRL +
Sbjct: 125 SLNFSVNQGKLRRVIERSGFAMAQQDVRYYLNGMLLEVSNGMLRAVATDGHRLAMCSMGA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ +I+PRK + L RLL ++ V + + + I+ + SKL+DGKF D
Sbjct: 185 GIEQPDRHQVIVPRKGILELARLLGEQDGDVSIVLGQHHIRANTGDFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R L + R +I+SN+K +G+RL ++ LKI
Sbjct: 245 YERVLPRGGDKLVVGDRQLLREAFSRTAILSNEKYRGIRLQLENGLLKI 293
>gi|229587580|ref|YP_002869699.1| DNA polymerase III subunit beta [Pseudomonas fluorescens SBW25]
gi|408479899|ref|ZP_11186118.1| DNA polymerase III subunit beta [Pseudomonas sp. R81]
gi|229359446|emb|CAY46287.1| DNA polymerase III, beta chain [Pseudomonas fluorescens SBW25]
Length = 367
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 161/289 (55%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDALIDIKVDEAKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+L Q L+ ++ F++AQQD+RYYLNG+LL + I AV++DGHRL +
Sbjct: 125 SLTCSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSEGIIRAVATDGHRLAMCSMRA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL E V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQPDRHQVIVPRKGILELARLLTEPEGNVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKI 293
>gi|167031025|ref|YP_001666256.1| DNA polymerase III subunit beta [Pseudomonas putida GB-1]
gi|166857513|gb|ABY95920.1| DNA polymerase III, beta subunit [Pseudomonas putida GB-1]
Length = 367
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 161/289 (55%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P
Sbjct: 66 GEITVPARKLMDICKSLPNDALIDIKVDEQKLLVKAGRSRFTLSTLPANDFPTAE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
L Q L+ ++ F++AQQD+RYYLNG+LL + + AVS+DGHRL +
Sbjct: 125 SLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLRAVSTDGHRLALCSMTA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ +I+PRK + L RLL + E V + + + I+ SKL+DGKF D
Sbjct: 185 PIEQDDRHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVVGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLKI 293
>gi|387771219|ref|ZP_10127385.1| DNA polymerase III, beta subunit [Pasteurella bettyae CCUG 2042]
gi|386902424|gb|EIJ67264.1| DNA polymerase III, beta subunit [Pasteurella bettyae CCUG 2042]
Length = 365
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 182/307 (59%), Gaps = 7/307 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ +V+ E +L PLQ V S++ + +P+L+N+L+ +++++ TD EV+++T
Sbjct: 1 MQFIVSREN--LLKPLQQVCSVLSSRPNIPVLNNVLLQISNDRLIITGTDLEVELSTQAQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP- 119
+ G + N + A+KF+DI RSLPE ++ + E ++SG++KF L TL A+EYP
Sbjct: 59 LVSGTTG-NFTIPAKKFLDICRSLPENAEINVVFEEDRAIVRSGRTKFNLATLPAEEYPN 117
Query: 120 IMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+ S+ DFE L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHR
Sbjct: 118 LADWQSEVDFE--LDQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHR 175
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L + +++ + S +I+PRK V L RLL+ E P L+I N +++ N+ +K
Sbjct: 176 LAVCTIALEQDLQNHS-VIVPRKGVLELVRLLDATEQPARLQIGTNNLRVQVENVLFTTK 234
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG+F DY+ V+ + + + L ++ R +I+S ++ + VRL + N +KIT +
Sbjct: 235 LIDGRFPDYRRVLPRNADHILEADWDILKQAFVRAAILSTERFRSVRLQLSQNQMKITAT 294
Query: 300 SSNREKA 306
+ +E+A
Sbjct: 295 NPEQEEA 301
>gi|398878969|ref|ZP_10634073.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM67]
gi|398883299|ref|ZP_10638256.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM60]
gi|398196961|gb|EJM83951.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM60]
gi|398197878|gb|EJM84850.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM67]
Length = 367
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 162/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPADP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GSITVPARKLMDICKSLPNDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+L Q L+ ++ F++AQQD+RYYLNG+LL I AV++DGHRL +
Sbjct: 125 SLTCSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGIIRAVATDGHRLAMCSMQA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL + V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKI 293
>gi|348027469|ref|YP_004870155.1| DNA polymerase III subunit beta [Glaciecola nitratireducens FR1064]
gi|347944812|gb|AEP28162.1| DNA polymerase III, beta subunit [Glaciecola nitratireducens
FR1064]
Length = 367
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 172/298 (57%), Gaps = 1/298 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ +L PLQ+V VE+++ LPILSN+L+ + + TD EV++ + +
Sbjct: 7 REGLLQPLQLVSGAVERRHTLPILSNVLIKVSEGTLWLTGTDLEVELISSVKLSGSFGDG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
I V A+K +DI+R + + IE IKSG+ K+TL TL A +YP + + + +
Sbjct: 67 EITVPAKKLVDIIRGINGESNIIFEIEENKAIIKSGRGKYTLSTLSASDYPNLE-DWEGE 125
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
EF + Q LK ++ +FS+AQQD+RYYLNG+ L ++ I V++DGHRL ++
Sbjct: 126 VEFEVKQSDLKGLIEKTHFSMAQQDVRYYLNGMSLETEEHVIRTVATDGHRLALSTLDYT 185
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+IIPRK V + RL+E+ + V+++I +N I+I ++ SKL+DG+F DY
Sbjct: 186 AATLPARQVIIPRKGVLEIIRLIEDNDTLVKVQIGSNHIRIFSTDFIFTSKLVDGRFPDY 245
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ V+ +K+ +R L + R I+SN+K KGVRL + LKIT ++ +E+A
Sbjct: 246 RRVLPKGSDKAVWSSRELLKAAFSRAMILSNEKFKGVRLNLASGELKITANNPEQEQA 303
>gi|226326919|ref|ZP_03802437.1| hypothetical protein PROPEN_00779 [Proteus penneri ATCC 35198]
gi|225204756|gb|EEG87110.1| DNA polymerase III, beta subunit [Proteus penneri ATCC 35198]
Length = 367
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 174/300 (58%), Gaps = 3/300 (1%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ + +
Sbjct: 6 EREQLLKPLQQVSGPLGGRPTLPILGNLLLKVTENTLSLTGTDLEMEMVARVNLSQSHEI 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++++ ++ + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDIWRGLPEGAEISVELDGDRLLVRSGRSRFSLSTLPASDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + V++DGHRL ++I
Sbjct: 125 EVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETENTELRTVATDGHRLAVCSMDI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLE-NKENPVELKISNNQIKIIFSNIEIISKLIDGKFL 246
+ S +I+PRK V L RLL+ E+ ++L+I +N I+ + SKL+DG+F
Sbjct: 185 GQSLPGHS-VIVPRKGVIELMRLLDGGGESSLQLQIGSNNIRAHVGDFIFTSKLVDGRFP 243
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
DY+ V+ K+ + + L ++ R +I+SN+K +GVR+ + LKIT ++ +E+A
Sbjct: 244 DYRRVLPKNPTKTVIAGCDILKQAFSRAAILSNEKFRGVRINLTSGQLKITANNPEQEEA 303
>gi|343517743|ref|ZP_08754739.1| DNA polymerase III, beta subunit [Haemophilus pittmaniae HK 85]
gi|343394594|gb|EGV07141.1| DNA polymerase III, beta subunit [Haemophilus pittmaniae HK 85]
Length = 366
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 107/315 (33%), Positives = 185/315 (58%), Gaps = 5/315 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ +++ TD EV++++ T
Sbjct: 1 MQFSISREN--LLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSRTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ ++ + A+KF+DI R+L + ++T+ E I+SG+SKF L TL A+EYP
Sbjct: 59 LSSSTANGAFTIPAKKFLDICRTLSDESEITVTFEEDRAIIQSGRSKFNLTTLPAEEYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+T + + + +F L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHRL
Sbjct: 119 LT-DWQSEVDFALEQSTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ ++++ + + +I+PRK V L RLLE+ + P L+I N ++I ++I SKL
Sbjct: 178 AVCTIELEQELQNHA-VILPRKGVLELNRLLESSDEPARLQIGTNNLRIHLNHIVFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ + + L ++ R SI+SN++++ VRL + N L IT S+
Sbjct: 237 IDGRFPDYRRVLPRNATRIVEGSWEALKQAFVRASILSNERVRSVRLNLSENQLNITASN 296
Query: 301 SNREKASST-DLIYH 314
E A T D+ YH
Sbjct: 297 PEHEVAEETVDVNYH 311
>gi|409396496|ref|ZP_11247482.1| DNA polymerase III subunit beta [Pseudomonas sp. Chol1]
gi|409118977|gb|EKM95367.1| DNA polymerase III subunit beta [Pseudomonas sp. Chol1]
Length = 367
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 165/289 (57%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVTLEDAAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + IKSG+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPSDALIDIRLDEQKVLIKSGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
F++ Q L+ ++ F++AQQD+RYYLNG+LL + V++DGHRL +
Sbjct: 125 SLGFSVEQGKLRRLIERSSFAMAQQDVRYYLNGMLLEVSNGMLRTVATDGHRLAMCSMQA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + +I+PRK + L RLL ++ V + + + ++ SKL+DGKF D
Sbjct: 185 GIEQADRHQVIVPRKGILELARLLTEQDAEVSIMLGQHHVRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R +L + R +I+SN+K +G+RL ++ LKI
Sbjct: 245 YERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLESGLLKI 293
>gi|226942172|ref|YP_002797245.1| DNA polymerase III subunit beta [Azotobacter vinelandii DJ]
gi|226717099|gb|ACO76270.1| DNA polymerase III, beta chain 1, 2, and 3 protein [Azotobacter
vinelandii DJ]
Length = 367
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 163/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEKQQLSLTGTDLEVELVGRVPLEENAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + IK+G+S+F+L TL A ++P
Sbjct: 66 GEITVPARKLMDICKSLPNDTLIDIRLDEQKLLIKAGRSRFSLSTLPASDFPTAE-EGLG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
F+L Q L+ ++ F++AQQD+RYYLNG+LL + AV++DGHRL +
Sbjct: 125 SLTFSLGQSKLRRLIERTSFAMAQQDVRYYLNGMLLEMNGGVLRAVATDGHRLALCSMQS 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + +I+PRK + L RLL +++ V + + I+ SKL+DGKF D
Sbjct: 185 GIEHADRHQVIVPRKGILELARLLTDQDGEVSIVLGQYHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPRGGDKKVLGDRQLLREAFSRTAILSNEKYRGIRLQLASGLLKI 293
>gi|119475237|ref|ZP_01615590.1| DNA polymerase III subunit beta [marine gamma proteobacterium
HTCC2143]
gi|119451440|gb|EAW32673.1| DNA polymerase III subunit beta [marine gamma proteobacterium
HTCC2143]
Length = 368
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 107/307 (34%), Positives = 179/307 (58%), Gaps = 4/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ V++ E A+L PL +V +VE++ LPILSN+L+ ++S TD EV++
Sbjct: 1 MKFVISRE--ALLKPLNLVAGVVERRQTLPILSNVLLELEGNQLSITGTDLEVELVGRVV 58
Query: 61 VGYG-NSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP 119
+ + I V ARK DI +SLP+ ++ +++ + I+SG+S+FTL TL A ++P
Sbjct: 59 LDQAPETGGEITVPARKLADICKSLPDGSEIEFTQDDQRVIIRSGRSRFTLSTLAASDFP 118
Query: 120 IMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+ S +FT+ Q LK +++ F++AQQD+RYYLNG+L Q + V++DGHR
Sbjct: 119 NVE-ESPGSQDFTVKQGDLKRLIDRTSFAMAQQDVRYYLNGMLWEVQSGQLRVVATDGHR 177
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L + + + +I+PRK V L RL+ + + V L I +N I+ SK
Sbjct: 178 LALCTLATSIETTENLQVILPRKGVVELARLMMKESDDVRLVIGSNHIRATTDEYTFTSK 237
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
L+DGKF DY V+ K+ +R++L ++ R +I+SN+K +GVRL++ + L+I +
Sbjct: 238 LVDGKFPDYDRVLPKASTKTIFGSRDELRQAFSRTAILSNEKYRGVRLLLSNDTLQIVAN 297
Query: 300 SSNREKA 306
+ +E+A
Sbjct: 298 NPEQEEA 304
>gi|441505618|ref|ZP_20987600.1| DNA polymerase III beta subunit [Photobacterium sp. AK15]
gi|441426701|gb|ELR64181.1| DNA polymerase III beta subunit [Photobacterium sp. AK15]
Length = 366
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 175/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL NIL+ +S TD EV++ A+
Sbjct: 6 EREQLLKPLQQVSGALGGRPSLPILGNILLQVEDGCLSMTGTDLEVELVAKVALAADFEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V +RKF+DI R LP++ + + +E + I+SG+S+++L TL A ++P + + +
Sbjct: 66 GAITVPSRKFLDICRGLPDSANIVVSLEGDRVIIRSGRSRYSLSTLPAADFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E TL Q L+ +++ FS+A QD+RYYLNG+L + K + +VS+DGHR+ ++
Sbjct: 125 EVEMTLPQGQLRHLIDSTQFSMAHQDVRYYLNGMLFETEGKLLRSVSTDGHRMAVCATDL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D + II+PRK V L RLL+ + V+++ N+ ++ + +N +KL+DG+F D
Sbjct: 185 DAELPG-KQIIVPRKGVLELMRLLDTPDAMVDIRFGNSNLRAVVNNFVFTTKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K + ++L ++ R +I+SN+K +GVRL + ++IT ++ +E+A
Sbjct: 244 YRRVMPQNSTKFVEASCDELRKAFSRAAILSNEKFRGVRLNLSNGEMRITANNPEQEEA 302
>gi|431800009|ref|YP_007226912.1| DNA polymerase III subunit beta [Pseudomonas putida HB3267]
gi|430790774|gb|AGA70969.1| DNA polymerase III subunit beta [Pseudomonas putida HB3267]
Length = 367
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 163/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDVLIDIKVDEQKLLVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
L Q L+ ++ F++AQQD+RYYLNG+LL + + AVS+DGHRL ++
Sbjct: 125 SLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLRAVSTDGHRLALCSMSA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ +I+PRK + L RLL + E V + + + I+ SKL+DGKF D
Sbjct: 185 PIEQDDRHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVVGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLKI 293
>gi|378947943|ref|YP_005205431.1| DnaN protein [Pseudomonas fluorescens F113]
gi|359757957|gb|AEV60036.1| DnaN [Pseudomonas fluorescens F113]
Length = 367
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 162/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVELEEPADP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GSITVPARKLMDICKSLPNDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+L Q L+ ++ F++AQQD+RYYLNG+LL I AV++DGHRL +
Sbjct: 125 SLTCSLDQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGVIRAVATDGHRLAMCSMQA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL + V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKI 293
>gi|330806659|ref|YP_004351121.1| DNA polymerase III subunit beta [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|423694507|ref|ZP_17668997.1| DNA polymerase III, beta subunit [Pseudomonas fluorescens Q8r1-96]
gi|327374767|gb|AEA66117.1| DNA polymerase III subunit beta [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|388004451|gb|EIK65764.1| DNA polymerase III, beta subunit [Pseudomonas fluorescens Q8r1-96]
Length = 367
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 162/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPADP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GSITVPARKLMDICKSLPNDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+L Q L+ ++ F++AQQD+RYYLNG+LL I AV++DGHRL +
Sbjct: 125 SLTCSLDQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGVIRAVATDGHRLAMCSMQA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL + V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKI 293
>gi|49086146|gb|AAT51331.1| PA0002, partial [synthetic construct]
Length = 368
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 165/289 (57%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE+ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERLQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLEDAAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I +E + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
F+++Q L+ +++ F++AQQD+RYYLNG+LL + +V++DGHRL ++
Sbjct: 125 SLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMCSLDA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+I+PRK + L RLL ++ V + + + I+ SKL+DGKF D
Sbjct: 185 QIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R +L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKI 293
>gi|212712613|ref|ZP_03320741.1| hypothetical protein PROVALCAL_03708 [Providencia alcalifaciens DSM
30120]
gi|422020448|ref|ZP_16366987.1| DNA polymerase III subunit beta [Providencia alcalifaciens Dmel2]
gi|212684829|gb|EEB44357.1| hypothetical protein PROVALCAL_03708 [Providencia alcalifaciens DSM
30120]
gi|414101584|gb|EKT63183.1| DNA polymerase III subunit beta [Providencia alcalifaciens Dmel2]
Length = 366
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 172/299 (57%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ + TD E+++ + +
Sbjct: 6 EREQLLKPLQQVSGPLGGRPTLPILGNLLLHVKEGALQLTGTDLEMEMMANVPLTREHEI 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + + + + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDIWRGLPEGSEIQVELNDDRLLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EF+L Q LK ++ FS+A QD+RYYLNG+L + + VS+DGHRL ++I
Sbjct: 125 EVEFSLPQSILKRLIEATQFSMAHQDVRYYLNGMLFETEGNMLRTVSTDGHRLAVCSMDI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
++ S S +I+PRK V L RLL+ + ++L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQELPSHS-VIVPRKGVMELMRLLDGGDALLQLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K+ + L ++ R +I+SN+K +GVRL N L+IT ++ +E+A
Sbjct: 244 YRRVLPKNPDKTLEARCDLLKQAFSRAAILSNEKFRGVRLFFSENQLRITANNPEQEEA 302
>gi|388544108|ref|ZP_10147397.1| DNA polymerase III subunit beta [Pseudomonas sp. M47T1]
gi|388277936|gb|EIK97509.1| DNA polymerase III subunit beta [Pseudomonas sp. M47T1]
Length = 367
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 160/289 (55%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
L Q L+ ++ F++AQQD+RYYLNG+LL + AV++DGHRL +
Sbjct: 125 SLTCNLEQSRLRRLIERTSFAMAQQDVRYYLNGMLLEVSNGLMRAVATDGHRLAMCSMKA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL + V + + + I+ SKL+DGKF D
Sbjct: 185 DITHDGRHQVIVPRKGILELARLLTEPDGTVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLKI 293
>gi|410616018|ref|ZP_11327013.1| DNA polymerase III subunit beta [Glaciecola polaris LMG 21857]
gi|410164333|dbj|GAC31151.1| DNA polymerase III subunit beta [Glaciecola polaris LMG 21857]
Length = 367
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 103/294 (35%), Positives = 179/294 (60%), Gaps = 1/294 (0%)
Query: 13 LHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIV 72
L PLQ+V VE+++ LPILSN+L+ + + TD EV++ + + I V
Sbjct: 11 LQPLQLVSGAVERRHTLPILSNVLIKVSENALWLTGTDLEVELISNVTLTGDFEEGEITV 70
Query: 73 AARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFT 132
A+K +DI+R L + +++ ++ ++ G+SK++L TL A +YP + + + + EF
Sbjct: 71 PAKKLLDIIRGLTDGSEISFQLDGNKAILRCGRSKYSLSTLSANDYPNLE-DWQGELEFE 129
Query: 133 LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFS 192
+SQ LK +++ V+FS+AQQD+RYYLNG+ L + I V++DGHRL ++N +
Sbjct: 130 ISQSNLKRLIDSVHFSMAQQDVRYYLNGMSLETEDNVIRTVATDGHRLALCRLNYTEATL 189
Query: 193 SCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVI 252
+IIPRK V + RL+E+ + +++++ +N I+I ++ SKL+DG+F DY+ V+
Sbjct: 190 PNRQVIIPRKGVMEIIRLIEDNDKSLKVQVGSNHIRIFSNDFIFTSKLVDGRFPDYRRVL 249
Query: 253 SNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+K+ + ++ L + R SI+SN+K KGVRL + LKIT ++ +E+A
Sbjct: 250 PKDGDKNIVASKLGLKNAFSRASILSNEKFKGVRLNLSSGELKITANNPEQEEA 303
>gi|422672589|ref|ZP_16731952.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. aceris
str. M302273]
gi|330970326|gb|EGH70392.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. aceris
str. M302273]
Length = 367
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 165/289 (57%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SL + I +++ + +K+G+S+FTL TL + ++P +
Sbjct: 66 GEITVPARKLMDICKSLSNDALIDIKLDDSKLIVKAGRSRFTLSTLPSNDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
FTL Q L+ ++ F++AQQD+RYYLNG+LL + AV++DGHRL ++
Sbjct: 125 SLTFTLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILRAVATDGHRLAMCSMSA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D + + +I+PRK + + RLL ++ V + + + I+ SKL+DGKF D
Sbjct: 185 DIEHADRHQVIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKI 293
>gi|312958104|ref|ZP_07772627.1| DNA polymerase III beta subunit [Pseudomonas fluorescens WH6]
gi|311287535|gb|EFQ66093.1| DNA polymerase III beta subunit [Pseudomonas fluorescens WH6]
Length = 367
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 162/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+L Q L+ ++ F++AQQD+RYYLNG+LL + I AV++DGHRL +
Sbjct: 125 SLTCSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSEGIIRAVATDGHRLAMCSMRA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL + V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKI 293
>gi|423092767|ref|ZP_17080563.1| DNA polymerase III, beta subunit [Pseudomonas fluorescens Q2-87]
gi|397882608|gb|EJK99095.1| DNA polymerase III, beta subunit [Pseudomonas fluorescens Q2-87]
Length = 367
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 162/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPADP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GSITVPARKLMDICKSLPNDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+L Q L+ ++ F++AQQD+RYYLNG+LL I AV++DGHRL +
Sbjct: 125 SLTCSLDQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGVIRAVATDGHRLAMCSMQA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL + V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKI 293
>gi|398999404|ref|ZP_10702140.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM18]
gi|398131439|gb|EJM20755.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM18]
Length = 367
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 162/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPADP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GSITVPARKLMDICKSLPNDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+L Q L+ ++ F++AQQD+RYYLNG+LL I AV++DGHRL +
Sbjct: 125 SLTCSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGIIRAVATDGHRLAMCSMQA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL + V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKI 293
>gi|303251823|ref|ZP_07337994.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307249124|ref|ZP_07531131.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|302649253|gb|EFL79438.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|306854412|gb|EFM86608.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
Length = 367
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 106/319 (33%), Positives = 184/319 (57%), Gaps = 12/319 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYT- 59
MQ + E+ +L PLQ V ++ + LP+++NIL+ +++S TD EV++TT
Sbjct: 1 MQFTITREQ--LLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTGTDLEVELTTVAT 58
Query: 60 ---AVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAK 116
AV + + A+KF+DI RSLPE +++ E +++ +SKF L TL A
Sbjct: 59 LEQAVDFAG---KFTIPAKKFLDICRSLPEDSSISVQFEEDRALVRAARSKFNLATLPAS 115
Query: 117 EYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSD 176
+YP + ++ K + +F++ Q TL +++ FS+A QD+RY+LNG+ + + V++D
Sbjct: 116 DYPNL-MDWKPEVDFSIEQSTLARLIDATQFSMANQDVRYFLNGMKFETEGNLLRTVATD 174
Query: 177 GHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEI 236
GHRL + ++++ + S +I+PRK V L RL+ + V L+I + +++ + +
Sbjct: 175 GHRLAVCTMALNQELLTHS-VIVPRKAVLELSRLVAVSDETVRLEIGTSNLRVSMNGVVF 233
Query: 237 ISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
SKLIDG+F DY+ V+ ++ L R+L R +I+SN+K +GVRL + N LKI
Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKI 293
Query: 297 TVSSSNREKASS-TDLIYH 314
T ++ +E+A D+ Y
Sbjct: 294 TANNPEQEEAEEIIDVAYQ 312
>gi|398841310|ref|ZP_10598533.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM102]
gi|398860590|ref|ZP_10616238.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM79]
gi|398900893|ref|ZP_10649880.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM50]
gi|398108818|gb|EJL98767.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM102]
gi|398180722|gb|EJM68300.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM50]
gi|398234867|gb|EJN20728.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM79]
Length = 367
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 162/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPADP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GSITVPARKLMDICKSLPNDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+L Q L+ ++ F++AQQD+RYYLNG+LL I AV++DGHRL +
Sbjct: 125 SLTCSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGIIRAVATDGHRLAMCSMQA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL + V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKI 293
>gi|440738491|ref|ZP_20918022.1| DNA polymerase III subunit beta [Pseudomonas fluorescens BRIP34879]
gi|447919198|ref|YP_007399766.1| DNA polymerase III subunit beta [Pseudomonas poae RE*1-1-14]
gi|440381027|gb|ELQ17573.1| DNA polymerase III subunit beta [Pseudomonas fluorescens BRIP34879]
gi|445203061|gb|AGE28270.1| DNA polymerase III subunit beta [Pseudomonas poae RE*1-1-14]
Length = 367
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 162/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+L Q L+ ++ F++AQQD+RYYLNG+LL + I AV++DGHRL +
Sbjct: 125 SLTCSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSEGIIRAVATDGHRLAMCSMRA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL + V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKI 293
>gi|90413731|ref|ZP_01221719.1| DNA polymerase III subunit beta [Photobacterium profundum 3TCK]
gi|90325200|gb|EAS41697.1| DNA polymerase III subunit beta [Photobacterium profundum 3TCK]
Length = 366
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 178/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL NIL+ +S TD EV++ A+
Sbjct: 6 EREHLLKPLQQVSGALGGRPSLPILGNILLKVEEGYLSMTGTDLEVELIAKLALEADFEI 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ V +RKF+DI R LP++ K+ + +E + I+SG+S+++L TL A ++P + + +
Sbjct: 66 GAVTVPSRKFLDICRGLPDSAKIAVTLEGDRILIRSGRSRYSLSTLPAADFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q + ++ FS+A QD+RYYLNG+L ++ +V++DGHR+ +++
Sbjct: 125 EVEFTLPQGRMSQLIQSTQFSMAHQDVRYYLNGMLFETDGSHLRSVATDGHRMAVCAIDL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
++ ++ II+PRK V L RLL+N E V+++I N+ I+ +N SKL+DG+F D
Sbjct: 185 AQELAT-KQIIVPRKGVLELVRLLDNAEAMVDIQIGNSNIRATVNNFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K + ++L ++ R +I+SN+K +GVR+ + ++IT ++ +E+A
Sbjct: 244 YRRVMPQSSNKFVEASCDELRKAFSRAAILSNEKFRGVRVNLSKGEMRITANNPEQEEA 302
>gi|260771048|ref|ZP_05879976.1| DNA polymerase III beta subunit [Vibrio furnissii CIP 102972]
gi|260613937|gb|EEX39128.1| DNA polymerase III beta subunit [Vibrio furnissii CIP 102972]
Length = 366
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ + PLQ V + + LPIL N+L+ ++S +TD EV++ + + +
Sbjct: 6 ERSHFIKPLQQVSGTLGGRATLPILGNLLLKVEDNQLSMTATDLEVELVSRVTLEGDFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF+DI R LP+ +T+ +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GTTTVPARKFLDICRGLPDAAVITVVLEGDRVQVRSGRSRFSLATLPASDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVELSLTQGELRGLVEKTQFSMANQDVRYYLNGMLFEIDGSTLRSVATDGHRMAVSQTEL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F++ II+PRK V L +LL+ E PV L+I ++ ++ +N SKL+DG+F D
Sbjct: 185 GADFAN-KQIIVPRKGVLELVKLLDAPEQPVVLQIGSSNLRAEVNNFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ ++L ++ R +I+SN+K +GVR+ + ++IT ++ +E+A
Sbjct: 244 YRRVLPQNTNKTLQAGCDELRQAFSRAAILSNEKFRGVRVNLDGGEMRITANNPEQEEA 302
>gi|77358984|ref|YP_338559.1| DNA polymerase III subunit beta [Pseudoalteromonas haloplanktis
TAC125]
gi|76873895|emb|CAI85116.1| DNA polymerase III, beta-subunit; processivity clamp of DNA
polymerase III [Pseudoalteromonas haloplanktis TAC125]
Length = 367
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 175/300 (58%), Gaps = 7/300 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ+ ++ ++ L PL V +E+K+ LPILSN+L+ + ++S TD E+++
Sbjct: 1 MQITISRQQ--FLKPLVQVSGAIERKHTLPILSNVLLAVENGQLSMTGTDLEIELVASVF 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
VG + + + A+K +DI +SLP+ +T+ ++ + + SGKS+F+L TL A+++P
Sbjct: 59 VGDDIADTKLTLPAKKLLDICKSLPDGSDLTLSLQEHQLLLTSGKSRFSLTTLAAEDFPN 118
Query: 121 MTLNSKYD--FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGH 178
+ ++D EF L++ L+ +L +FS+A QD+RYYLNG+ +I V++DGH
Sbjct: 119 L---EQWDGEVEFQLTRLELRKLLESTHFSMANQDVRYYLNGMSFEVDNTDIKTVATDGH 175
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL Q + + ++ +IIPRK V + RL+ E V ++ N I+II S
Sbjct: 176 RLAIAQKQLKQSLNTQRQLIIPRKGVQEIMRLMVADEELVTIQFGANHIRIIDIEFTFTS 235
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KL+DG+F DY+ V+ +K NR L + QR+SI+SN+K +GVRL + LKIT
Sbjct: 236 KLVDGRFPDYRRVLPRGGDKVITANREWLRSAFQRVSILSNEKFRGVRLNLSNGLLKITA 295
>gi|262189752|ref|ZP_06048107.1| DNA polymerase III beta subunit [Vibrio cholerae CT 5369-93]
gi|262034366|gb|EEY52751.1| DNA polymerase III beta subunit [Vibrio cholerae CT 5369-93]
Length = 353
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ ++S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLEGEFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARKF+DI R LP++ +T+ +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPASDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ + +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVAQAQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +LL+ E PV L+I ++ ++ ++ SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ +L ++ R +I+SN+K +GVR+ + N ++IT ++ +E+A
Sbjct: 244 YRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITANNPEQEEA 302
>gi|395650526|ref|ZP_10438376.1| DNA polymerase III subunit beta [Pseudomonas extremaustralis 14-3
substr. 14-3b]
Length = 367
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 162/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+L Q L+ ++ F++AQQD+RYYLNG+LL + I AV++DGHRL +
Sbjct: 125 SLTCSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSEGIIRAVATDGHRLAMCSMKA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL E V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQPDRHQVIVPRKGILELARLLTEPEGNVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVVGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKI 293
>gi|365540367|ref|ZP_09365542.1| DNA polymerase III subunit beta [Vibrio ordalii ATCC 33509]
Length = 366
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 180/299 (60%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ + PLQ V + + LPIL N+L+ +S +TD EV++ + + +
Sbjct: 6 ERSHFIKPLQQVSGTLGGRATLPILGNLLLKVEENVLSMTATDLEVELISRVTLEGECEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARKF+DI R LP++ +T+ +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPARKFLDICRGLPDSAVITVVLEGDRIQMRSGRSRFSLATLPASDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVEVSLTQAELRSLIEKTQFSMANQDVRYYLNGMLFEIDGSTLRSVATDGHRMAVSQTAL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F++ II+PRK V L +LL+ E PV L+I ++ ++ +N SKL+DG+F D
Sbjct: 185 SADFAN-KQIIVPRKGVQELVKLLDAPEQPVVLQIGSSNLRAQVNNFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ + K+ ++L ++ R +I+SN+K +GVR+ + N ++IT ++ +E+A
Sbjct: 244 YRRVMPQQTTKTLETGCDELRQAFSRAAILSNEKFRGVRVNLADNAMRITANNPEQEEA 302
>gi|153827733|ref|ZP_01980400.1| DNA polymerase III, beta chain [Vibrio cholerae MZO-2]
gi|229515948|ref|ZP_04405405.1| DNA polymerase III beta subunit [Vibrio cholerae TMA 21]
gi|149737791|gb|EDM52696.1| DNA polymerase III, beta chain [Vibrio cholerae MZO-2]
gi|229347048|gb|EEO12010.1| DNA polymerase III beta subunit [Vibrio cholerae TMA 21]
Length = 366
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ ++S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLEGEFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARKF+DI R LP++ +T+ +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPASDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ + +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVAQAQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +LL+ E PV L+I ++ ++ ++ SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ +L ++ R +I+SN+K +GVR+ + N ++IT ++ +E+A
Sbjct: 244 YRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITANNPEQEEA 302
>gi|336122795|ref|YP_004564843.1| DNA polymerase III subunit beta [Vibrio anguillarum 775]
gi|335340518|gb|AEH31801.1| DNA polymerase III, beta chain [Vibrio anguillarum 775]
Length = 366
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 180/299 (60%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ + PLQ V + + LPIL N+L+ ++S +TD EV++ + + +
Sbjct: 6 ERSHFIKPLQQVSGTLGGRATLPILGNLLLKVEDNELSMTATDLEVELISRVTLEGECEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARKF+DI R LP++ +T+ +E + + SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPARKFLDICRGLPDSAVITVVLEGDRIQMHSGRSRFSLATLPASDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVEVSLTQAELRSLIEKTQFSMANQDVRYYLNGMLFEIDGSTLRSVATDGHRMAVSQTAL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F++ II+PRK V L +LL+ E PV L+I ++ ++ +N SKL+DG+F D
Sbjct: 185 SADFAN-KQIIVPRKGVQELVKLLDAPEQPVVLQIGSSNLRAQVNNFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ + K+ ++L ++ R +I+SN+K +GVR+ + N ++IT ++ +E+A
Sbjct: 244 YRRVMPQQTTKTLETGCDELRQAFSRAAILSNEKFRGVRVNLADNEMRITANNPEQEEA 302
>gi|258622959|ref|ZP_05717974.1| DNA polymerase III, beta chain [Vibrio mimicus VM573]
gi|258626083|ref|ZP_05720934.1| DNA polymerase III, beta chain [Vibrio mimicus VM603]
gi|262172779|ref|ZP_06040457.1| DNA polymerase III beta subunit [Vibrio mimicus MB-451]
gi|424810941|ref|ZP_18236275.1| DNA polymerase III, beta chain [Vibrio mimicus SX-4]
gi|449144910|ref|ZP_21775721.1| DNA polymerase III subunit beta [Vibrio mimicus CAIM 602]
gi|258581609|gb|EEW06507.1| DNA polymerase III, beta chain [Vibrio mimicus VM603]
gi|258584742|gb|EEW09476.1| DNA polymerase III, beta chain [Vibrio mimicus VM573]
gi|261893855|gb|EEY39841.1| DNA polymerase III beta subunit [Vibrio mimicus MB-451]
gi|342321952|gb|EGU17748.1| DNA polymerase III, beta chain [Vibrio mimicus SX-4]
gi|449079430|gb|EMB50353.1| DNA polymerase III subunit beta [Vibrio mimicus CAIM 602]
Length = 366
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ ++S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLEGEFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARKF+DI R LP++ +T+ +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPANDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ + +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVAQAQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +LL+ E PV L+I ++ ++ ++ SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ +L ++ R +I+SN+K +GVR+ + N ++IT ++ +E+A
Sbjct: 244 YRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITANNPEQEEA 302
>gi|153802490|ref|ZP_01957076.1| DNA polymerase III, beta chain [Vibrio cholerae MZO-3]
gi|229530201|ref|ZP_04419590.1| DNA polymerase III beta subunit [Vibrio cholerae 12129(1)]
gi|262402081|ref|ZP_06078645.1| DNA polymerase III beta subunit [Vibrio sp. RC586]
gi|384423373|ref|YP_005632731.1| DNA polymerase III subunit beta [Vibrio cholerae LMA3984-4]
gi|124121960|gb|EAY40703.1| DNA polymerase III, beta chain [Vibrio cholerae MZO-3]
gi|229332334|gb|EEN97821.1| DNA polymerase III beta subunit [Vibrio cholerae 12129(1)]
gi|262351727|gb|EEZ00859.1| DNA polymerase III beta subunit [Vibrio sp. RC586]
gi|327482926|gb|AEA77333.1| DNA polymerase III beta subunit [Vibrio cholerae LMA3984-4]
Length = 366
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ ++S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLEGEFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARKF+DI R LP++ +T+ +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPASDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ + +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVAQAQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +LL+ E PV L+I ++ ++ ++ SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ +L ++ R +I+SN+K +GVR+ + N ++IT ++ +E+A
Sbjct: 244 YRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITANNPEQEEA 302
>gi|121587274|ref|ZP_01677047.1| DNA polymerase III, beta chain [Vibrio cholerae 2740-80]
gi|261213262|ref|ZP_05927544.1| DNA polymerase III beta subunit [Vibrio sp. RC341]
gi|121548520|gb|EAX58576.1| DNA polymerase III, beta chain [Vibrio cholerae 2740-80]
gi|260837536|gb|EEX64239.1| DNA polymerase III beta subunit [Vibrio sp. RC341]
Length = 366
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ ++S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEDNQLSMTATDLEVELISRVTLEGEFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARKF+DI R LP++ +T+ +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPASDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ + +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVAQAQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +LL+ E PV L+I ++ ++ ++ SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ +L ++ R +I+SN+K +GVR+ + N ++IT ++ +E+A
Sbjct: 244 YRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITANNPEQEEA 302
>gi|398997449|ref|ZP_10700274.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM21]
gi|398124091|gb|EJM13614.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM21]
Length = 367
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 162/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPADP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GSITVPARKLMDICKSLPNDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+L Q L+ ++ F++AQQD+RYYLNG+LL I AV++DGHRL +
Sbjct: 125 SLTCSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGIIRAVATDGHRLAMCSMQA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL + V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQPDRHQVIVPRKGILELARLLTEPDGIVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKI 293
>gi|254225545|ref|ZP_04919154.1| DNA polymerase III, beta chain [Vibrio cholerae V51]
gi|125621865|gb|EAZ50190.1| DNA polymerase III, beta chain [Vibrio cholerae V51]
Length = 366
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ ++S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLEGEFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARKF+DI R LP++ +T+ +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPASDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ + +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVAQAQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +LL+ E PV L+I ++ ++ ++ SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ +L ++ R +I+SN+K +GVR+ + N ++IT ++ +E+A
Sbjct: 244 YRRVLPQHTNKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITANNPEQEEA 302
>gi|229524914|ref|ZP_04414319.1| DNA polymerase III beta subunit [Vibrio cholerae bv. albensis
VL426]
gi|424657902|ref|ZP_18095176.1| DNA polymerase III, beta subunit [Vibrio cholerae HE-16]
gi|229338495|gb|EEO03512.1| DNA polymerase III beta subunit [Vibrio cholerae bv. albensis
VL426]
gi|408057330|gb|EKG92182.1| DNA polymerase III, beta subunit [Vibrio cholerae HE-16]
Length = 366
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ ++S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLEGEFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARKF+DI R LP++ +T+ +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPASDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ + +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVAQAQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +LL+ E PV L+I ++ ++ ++ SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ +L ++ R +I+SN+K +GVR+ + N ++IT ++ +E+A
Sbjct: 244 YRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNGMRITANNPEQEEA 302
>gi|15640045|ref|NP_062597.1| DNA polymerase III subunit beta [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121727891|ref|ZP_01680950.1| DNA polymerase III, beta chain [Vibrio cholerae V52]
gi|147674757|ref|YP_001218399.1| DNA polymerase III subunit beta [Vibrio cholerae O395]
gi|153819849|ref|ZP_01972516.1| DNA polymerase III, beta chain [Vibrio cholerae NCTC 8457]
gi|153821934|ref|ZP_01974601.1| DNA polymerase III, beta chain [Vibrio cholerae B33]
gi|227080250|ref|YP_002808801.1| DNA polymerase III subunit beta [Vibrio cholerae M66-2]
gi|227116534|ref|YP_002818430.1| DNA polymerase III, beta chain [Vibrio cholerae O395]
gi|229508298|ref|ZP_04397802.1| DNA polymerase III beta subunit [Vibrio cholerae BX 330286]
gi|229508863|ref|ZP_04398354.1| DNA polymerase III beta subunit [Vibrio cholerae B33]
gi|229517134|ref|ZP_04406580.1| DNA polymerase III beta subunit [Vibrio cholerae RC9]
gi|229606572|ref|YP_002877220.1| DNA polymerase III subunit beta [Vibrio cholerae MJ-1236]
gi|254851578|ref|ZP_05240928.1| DNA polymerase III subunit beta [Vibrio cholerae MO10]
gi|262155884|ref|ZP_06029006.1| DNA polymerase III beta subunit [Vibrio cholerae INDRE 91/1]
gi|262167101|ref|ZP_06034816.1| DNA polymerase III beta subunit [Vibrio cholerae RC27]
gi|298501198|ref|ZP_07010997.1| DNA polymerase III, beta subunit [Vibrio cholerae MAK 757]
gi|360036763|ref|YP_004938526.1| DNA polymerase III subunit beta [Vibrio cholerae O1 str.
2010EL-1786]
gi|379739919|ref|YP_005331888.1| DNA polymerase III subunit beta [Vibrio cholerae IEC224]
gi|417811095|ref|ZP_12457763.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-49A2]
gi|418330724|ref|ZP_12941691.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-06A1]
gi|418339187|ref|ZP_12948079.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-23A1]
gi|418342257|ref|ZP_12949078.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-28A1]
gi|418347438|ref|ZP_12952180.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-43A1]
gi|418356645|ref|ZP_12959361.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-61A1]
gi|419824488|ref|ZP_14348001.1| DNA polymerase III, beta subunit [Vibrio cholerae CP1033(6)]
gi|421315307|ref|ZP_15765883.1| DNA polymerase III, beta subunit [Vibrio cholerae CP1032(5)]
gi|421318815|ref|ZP_15769379.1| DNA polymerase III, beta subunit [Vibrio cholerae CP1038(11)]
gi|421322868|ref|ZP_15773403.1| DNA polymerase III, beta subunit [Vibrio cholerae CP1041(14)]
gi|421326320|ref|ZP_15776841.1| DNA polymerase III, beta subunit [Vibrio cholerae CP1042(15)]
gi|421330245|ref|ZP_15780733.1| DNA polymerase III, beta subunit [Vibrio cholerae CP1046(19)]
gi|421333937|ref|ZP_15784411.1| DNA polymerase III, beta subunit [Vibrio cholerae CP1048(21)]
gi|421345332|ref|ZP_15795722.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-46A1]
gi|422890039|ref|ZP_16932498.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-40A1]
gi|422900611|ref|ZP_16936247.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-48A1]
gi|422905009|ref|ZP_16939895.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-70A1]
gi|422911757|ref|ZP_16946306.1| DNA polymerase III, beta subunit [Vibrio cholerae HFU-02]
gi|422924223|ref|ZP_16957292.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-38A1]
gi|423143289|ref|ZP_17130923.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-19A1]
gi|423148269|ref|ZP_17135646.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-21A1]
gi|423152058|ref|ZP_17139288.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-22A1]
gi|423154849|ref|ZP_17142000.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-32A1]
gi|423158713|ref|ZP_17145699.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-33A2]
gi|423163376|ref|ZP_17150191.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-48B2]
gi|423729379|ref|ZP_17702729.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-17A1]
gi|423743522|ref|ZP_17710880.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-50A2]
gi|423887684|ref|ZP_17724946.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-62A1]
gi|423920154|ref|ZP_17729559.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-77A1]
gi|424000559|ref|ZP_17743668.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-17A2]
gi|424007535|ref|ZP_17750499.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-37A1]
gi|424022522|ref|ZP_17762204.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-62B1]
gi|424025541|ref|ZP_17765177.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-69A1]
gi|424584913|ref|ZP_18024524.1| DNA polymerase III, beta subunit [Vibrio cholerae CP1030(3)]
gi|424593539|ref|ZP_18032897.1| DNA polymerase III, beta subunit [Vibrio cholerae CP1040(13)]
gi|424597468|ref|ZP_18036684.1| DNA polymerase III, beta subunit [Vibrio Cholerae CP1044(17)]
gi|424600245|ref|ZP_18039418.1| DNA polymerase III, beta subunit [Vibrio cholerae CP1047(20)]
gi|424605144|ref|ZP_18044130.1| DNA polymerase III, beta subunit [Vibrio cholerae CP1050(23)]
gi|424608870|ref|ZP_18047747.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-39A1]
gi|424611775|ref|ZP_18050602.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-41A1]
gi|424615666|ref|ZP_18054376.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-42A1]
gi|424620413|ref|ZP_18058960.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-47A1]
gi|424643233|ref|ZP_18081008.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-56A2]
gi|424651164|ref|ZP_18088705.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-57A2]
gi|424655117|ref|ZP_18092434.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-81A2]
gi|440712062|ref|ZP_20892688.1| DNA polymerase III beta subunit [Vibrio cholerae 4260B]
gi|443502070|ref|ZP_21069079.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-64A1]
gi|443505969|ref|ZP_21072785.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-65A1]
gi|443509807|ref|ZP_21076498.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-67A1]
gi|443513647|ref|ZP_21080209.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-68A1]
gi|443517455|ref|ZP_21083898.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-71A1]
gi|443522041|ref|ZP_21088308.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-72A2]
gi|443528975|ref|ZP_21094998.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-7A1]
gi|443536500|ref|ZP_21102362.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-80A1]
gi|443536538|ref|ZP_21102398.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-81A1]
gi|449054689|ref|ZP_21733357.1| DNA polymerase III beta subunit [Vibrio cholerae O1 str. Inaba
G4222]
gi|14547987|sp|Q9KVX5.1|DPO3B_VIBCH RecName: Full=DNA polymerase III subunit beta
gi|9654404|gb|AAF93191.1| DNA polymerase III, beta chain [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121629835|gb|EAX62250.1| DNA polymerase III, beta chain [Vibrio cholerae V52]
gi|126509610|gb|EAZ72204.1| DNA polymerase III, beta chain [Vibrio cholerae NCTC 8457]
gi|126520554|gb|EAZ77777.1| DNA polymerase III, beta chain [Vibrio cholerae B33]
gi|146316640|gb|ABQ21179.1| DNA polymerase III, beta chain [Vibrio cholerae O395]
gi|227008138|gb|ACP04350.1| DNA polymerase III, beta chain [Vibrio cholerae M66-2]
gi|227011984|gb|ACP08194.1| DNA polymerase III, beta chain [Vibrio cholerae O395]
gi|229346197|gb|EEO11169.1| DNA polymerase III beta subunit [Vibrio cholerae RC9]
gi|229354138|gb|EEO19070.1| DNA polymerase III beta subunit [Vibrio cholerae B33]
gi|229354571|gb|EEO19493.1| DNA polymerase III beta subunit [Vibrio cholerae BX 330286]
gi|229369227|gb|ACQ59650.1| DNA polymerase III beta subunit [Vibrio cholerae MJ-1236]
gi|254847283|gb|EET25697.1| DNA polymerase III subunit beta [Vibrio cholerae MO10]
gi|262024487|gb|EEY43173.1| DNA polymerase III beta subunit [Vibrio cholerae RC27]
gi|262030336|gb|EEY48978.1| DNA polymerase III beta subunit [Vibrio cholerae INDRE 91/1]
gi|297540070|gb|EFH76132.1| DNA polymerase III, beta subunit [Vibrio cholerae MAK 757]
gi|340046205|gb|EGR07136.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-49A2]
gi|341627217|gb|EGS52541.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-70A1]
gi|341628621|gb|EGS53846.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-48A1]
gi|341628907|gb|EGS54095.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-40A1]
gi|341642180|gb|EGS66665.1| DNA polymerase III, beta subunit [Vibrio cholerae HFU-02]
gi|341649412|gb|EGS73389.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-38A1]
gi|356423358|gb|EHH76810.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-06A1]
gi|356424014|gb|EHH77436.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-21A1]
gi|356428055|gb|EHH81285.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-19A1]
gi|356428740|gb|EHH81961.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-23A1]
gi|356436207|gb|EHH89327.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-22A1]
gi|356439156|gb|EHH92145.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-28A1]
gi|356446878|gb|EHH99669.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-32A1]
gi|356448870|gb|EHI01631.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-43A1]
gi|356450817|gb|EHI03527.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-61A1]
gi|356451440|gb|EHI04125.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-33A2]
gi|356456890|gb|EHI09467.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-48B2]
gi|356647917|gb|AET27972.1| DNA polymerase III subunit beta [Vibrio cholerae O1 str.
2010EL-1786]
gi|378793429|gb|AFC56900.1| DNA polymerase III subunit beta [Vibrio cholerae IEC224]
gi|395924271|gb|EJH35077.1| DNA polymerase III, beta subunit [Vibrio cholerae CP1032(5)]
gi|395925452|gb|EJH36250.1| DNA polymerase III, beta subunit [Vibrio cholerae CP1041(14)]
gi|395926568|gb|EJH37346.1| DNA polymerase III, beta subunit [Vibrio cholerae CP1038(11)]
gi|395936044|gb|EJH46774.1| DNA polymerase III, beta subunit [Vibrio cholerae CP1042(15)]
gi|395936420|gb|EJH47144.1| DNA polymerase III, beta subunit [Vibrio cholerae CP1046(19)]
gi|395938300|gb|EJH48994.1| DNA polymerase III, beta subunit [Vibrio cholerae CP1048(21)]
gi|395948942|gb|EJH59577.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-46A1]
gi|395965481|gb|EJH75650.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-56A2]
gi|395965630|gb|EJH75793.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-57A2]
gi|395967937|gb|EJH77961.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-42A1]
gi|395977685|gb|EJH87089.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-47A1]
gi|395979795|gb|EJH89120.1| DNA polymerase III, beta subunit [Vibrio cholerae CP1030(3)]
gi|395980199|gb|EJH89488.1| DNA polymerase III, beta subunit [Vibrio cholerae CP1047(20)]
gi|408011496|gb|EKG49306.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-39A1]
gi|408018676|gb|EKG56109.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-41A1]
gi|408038998|gb|EKG75307.1| DNA polymerase III, beta subunit [Vibrio cholerae CP1040(13)]
gi|408046112|gb|EKG81828.1| DNA polymerase III, beta subunit [Vibrio Cholerae CP1044(17)]
gi|408047883|gb|EKG83380.1| DNA polymerase III, beta subunit [Vibrio cholerae CP1050(23)]
gi|408058366|gb|EKG93169.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-81A2]
gi|408613018|gb|EKK86349.1| DNA polymerase III, beta subunit [Vibrio cholerae CP1033(6)]
gi|408629189|gb|EKL01898.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-17A1]
gi|408645776|gb|EKL17413.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-50A2]
gi|408661060|gb|EKL32054.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-77A1]
gi|408661816|gb|EKL32795.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-62A1]
gi|408843799|gb|EKL83949.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-37A1]
gi|408850926|gb|EKL90867.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-17A2]
gi|408876608|gb|EKM15721.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-62B1]
gi|408882529|gb|EKM21344.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-69A1]
gi|439972307|gb|ELP48602.1| DNA polymerase III beta subunit [Vibrio cholerae 4260B]
gi|443433553|gb|ELS76054.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-64A1]
gi|443437382|gb|ELS83473.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-65A1]
gi|443441222|gb|ELS90884.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-67A1]
gi|443445038|gb|ELS98289.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-68A1]
gi|443448872|gb|ELT05481.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-71A1]
gi|443451934|gb|ELT12171.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-72A2]
gi|443460238|gb|ELT27626.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-7A1]
gi|443460355|gb|ELT31444.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-80A1]
gi|443467785|gb|ELT42439.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-81A1]
gi|448265835|gb|EMB03068.1| DNA polymerase III beta subunit [Vibrio cholerae O1 str. Inaba
G4222]
Length = 366
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ ++S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLEGEFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARKF+DI R LP++ +T+ +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPASDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ + +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVAQAQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +LL+ E PV L+I ++ ++ ++ SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ +L ++ R +I+SN+K +GVR+ + N ++IT ++ +E+A
Sbjct: 244 YRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNGMRITANNPEQEEA 302
>gi|422606598|ref|ZP_16678606.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. mori str.
301020]
gi|330890248|gb|EGH22909.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. mori str.
301020]
Length = 367
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 164/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SL + I +++ + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLSSDALIDIKLDDSKLIVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
F L Q L+ ++ F++AQQD+RYYLNG+LL + AV++DGHRL ++
Sbjct: 125 SLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILRAVATDGHRLAMCSMSA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D + + +I+PRK + + RLL ++ V + + + I+ SKL+DGKF D
Sbjct: 185 DIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKI 293
>gi|398944804|ref|ZP_10671473.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM41(2012)]
gi|407367475|ref|ZP_11114007.1| DNA polymerase III subunit beta [Pseudomonas mandelii JR-1]
gi|398157787|gb|EJM46160.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM41(2012)]
Length = 367
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 163/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPADP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GSITVPARKLMDICKSLPNDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+L Q L+ ++ F++AQQD+RYYLNG+LL + I AV++DGHRL +
Sbjct: 125 SLTCSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSEGIIRAVATDGHRLAMCSMKA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL + V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQPDRHQVIVPRKGILELARLLTEPDGIVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKI 293
>gi|153212930|ref|ZP_01948524.1| DNA polymerase III, beta chain [Vibrio cholerae 1587]
gi|229520185|ref|ZP_04409612.1| DNA polymerase III beta subunit [Vibrio cholerae TM 11079-80]
gi|254291126|ref|ZP_04961923.1| DNA polymerase III, beta chain [Vibrio cholerae AM-19226]
gi|417818614|ref|ZP_12465236.1| DNA polymerase III, beta subunit [Vibrio cholerae HE39]
gi|417822177|ref|ZP_12468779.1| DNA polymerase III, beta subunit [Vibrio cholerae HE48]
gi|419827717|ref|ZP_14351212.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-1A2]
gi|419831340|ref|ZP_14354815.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-61A2]
gi|419834953|ref|ZP_14358403.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-46B1]
gi|421341594|ref|ZP_15792005.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-43B1]
gi|421352781|ref|ZP_15803121.1| DNA polymerase III, beta subunit [Vibrio cholerae HE-45]
gi|422305410|ref|ZP_16392615.1| DNA polymerase III, beta subunit [Vibrio cholerae CP1035(8)]
gi|422908528|ref|ZP_16943220.1| DNA polymerase III, beta subunit [Vibrio cholerae HE-09]
gi|422915744|ref|ZP_16950109.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-02A1]
gi|423733292|ref|ZP_17706531.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-41B1]
gi|423810652|ref|ZP_17714698.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-55C2]
gi|423844890|ref|ZP_17718436.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-59A1]
gi|423876922|ref|ZP_17722103.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-60A1]
gi|423961704|ref|ZP_17735810.1| DNA polymerase III, beta subunit [Vibrio cholerae HE-40]
gi|423986061|ref|ZP_17739366.1| DNA polymerase III, beta subunit [Vibrio cholerae HE-46]
gi|423994677|ref|ZP_17739441.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-02C1]
gi|424007593|ref|ZP_17750555.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-44C1]
gi|424011959|ref|ZP_17754724.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-55B2]
gi|424017971|ref|ZP_17757789.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-59B1]
gi|424589287|ref|ZP_18028751.1| DNA polymerase III, beta subunit [Vibrio cholerae CP1037(10)]
gi|424623352|ref|ZP_18061844.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-50A1]
gi|424627921|ref|ZP_18066248.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-51A1]
gi|424631869|ref|ZP_18070007.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-52A1]
gi|424634958|ref|ZP_18072994.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-55A1]
gi|424638783|ref|ZP_18076695.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-56A1]
gi|424647037|ref|ZP_18084731.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-57A1]
gi|443525909|ref|ZP_21092016.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-78A1]
gi|124116156|gb|EAY34976.1| DNA polymerase III, beta chain [Vibrio cholerae 1587]
gi|150422971|gb|EDN14921.1| DNA polymerase III, beta chain [Vibrio cholerae AM-19226]
gi|229342779|gb|EEO07770.1| DNA polymerase III beta subunit [Vibrio cholerae TM 11079-80]
gi|340044222|gb|EGR05175.1| DNA polymerase III, beta subunit [Vibrio cholerae HE39]
gi|340049790|gb|EGR10702.1| DNA polymerase III, beta subunit [Vibrio cholerae HE48]
gi|341640458|gb|EGS65047.1| DNA polymerase III, beta subunit [Vibrio cholerae HE-09]
gi|341642105|gb|EGS66592.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-02A1]
gi|395948222|gb|EJH58875.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-43B1]
gi|395956929|gb|EJH67518.1| DNA polymerase III, beta subunit [Vibrio cholerae HE-45]
gi|408017779|gb|EKG55261.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-50A1]
gi|408023494|gb|EKG60656.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-52A1]
gi|408028496|gb|EKG65386.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-56A1]
gi|408028755|gb|EKG65617.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-55A1]
gi|408038019|gb|EKG74379.1| DNA polymerase III, beta subunit [Vibrio cholerae CP1037(10)]
gi|408038751|gb|EKG75078.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-57A1]
gi|408060085|gb|EKG94800.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-51A1]
gi|408624728|gb|EKK97666.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-1A2]
gi|408629036|gb|EKL01750.1| DNA polymerase III, beta subunit [Vibrio cholerae CP1035(8)]
gi|408632758|gb|EKL05193.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-41B1]
gi|408637482|gb|EKL09530.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-55C2]
gi|408645365|gb|EKL17020.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-60A1]
gi|408646464|gb|EKL18064.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-59A1]
gi|408652837|gb|EKL24028.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-61A2]
gi|408654879|gb|EKL26006.1| DNA polymerase III, beta subunit [Vibrio cholerae HE-40]
gi|408662849|gb|EKL33754.1| DNA polymerase III, beta subunit [Vibrio cholerae HE-46]
gi|408855755|gb|EKL95451.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-02C1]
gi|408859681|gb|EKL99336.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-46B1]
gi|408863156|gb|EKM02648.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-55B2]
gi|408868343|gb|EKM07679.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-44C1]
gi|408871782|gb|EKM11010.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-59B1]
gi|443455717|gb|ELT19477.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-78A1]
Length = 366
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ ++S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLEGEFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARKF+DI R LP++ +T+ +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPANDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ + +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVAQAQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +LL+ E PV L+I ++ ++ ++ SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ +L ++ R +I+SN+K +GVR+ + N ++IT ++ +E+A
Sbjct: 244 YRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITANNPEQEEA 302
>gi|429885496|ref|ZP_19367082.1| DNA polymerase III beta subunit [Vibrio cholerae PS15]
gi|429227718|gb|EKY33706.1| DNA polymerase III beta subunit [Vibrio cholerae PS15]
Length = 366
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ ++S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLEGEFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARKF+DI R LP++ +T+ +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPASDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ + +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVAQAQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +LL+ E PV L+I ++ ++ ++ SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ +L ++ R +I+SN+K +GVR+ + N ++IT ++ +E+A
Sbjct: 244 YRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITANNPEQEEA 302
>gi|197286951|ref|YP_002152823.1| DNA polymerase III subunit beta [Proteus mirabilis HI4320]
gi|227354808|ref|ZP_03839225.1| DNA polymerase III beta subunit [Proteus mirabilis ATCC 29906]
gi|425070461|ref|ZP_18473574.1| DNA polymerase III subunit beta [Proteus mirabilis WGLW6]
gi|425070775|ref|ZP_18473881.1| DNA polymerase III subunit beta [Proteus mirabilis WGLW4]
gi|118801|sp|P22838.1|DPO3B_PROMI RecName: Full=DNA polymerase III subunit beta
gi|150879|gb|AAA83959.1| DNA polymerase III beta subunit [Proteus mirabilis]
gi|194684438|emb|CAR46154.1| DNA polymerase III beta subunit [Proteus mirabilis HI4320]
gi|227165126|gb|EEI49957.1| DNA polymerase III beta subunit [Proteus mirabilis ATCC 29906]
gi|404594758|gb|EKA95314.1| DNA polymerase III subunit beta [Proteus mirabilis WGLW6]
gi|404599600|gb|EKB00053.1| DNA polymerase III subunit beta [Proteus mirabilis WGLW4]
Length = 367
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 175/300 (58%), Gaps = 3/300 (1%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ ++ +
Sbjct: 6 EREQLLKPLQQVSGPLGGRPTLPILGNLLLKVTENTLSLTGTDLEMEMMARVSLSQSHEI 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++++ ++ + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDIWRGLPEGAEISVELDGDRLLVRSGRSRFSLSTLPASDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + V++DGHRL ++I
Sbjct: 125 EVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETENTELRTVATDGHRLAVCAMDI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLEN-KENPVELKISNNQIKIIFSNIEIISKLIDGKFL 246
+ S +I+PRK V L RLL+ E+ ++L+I +N ++ + SKL+DG+F
Sbjct: 185 GQSLPGHS-VIVPRKGVIELMRLLDGSGESLLQLQIGSNNLRAHVGDFIFTSKLVDGRFP 243
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
DY+ V+ K+ + + L ++ R +I+SN+K +GVR+ + LKIT ++ +E+A
Sbjct: 244 DYRRVLPKNPTKTVIAGCDILKQAFSRAAILSNEKFRGVRINLTNGQLKITANNPEQEEA 303
>gi|392547691|ref|ZP_10294828.1| DNA polymerase III subunit beta [Pseudoalteromonas rubra ATCC
29570]
Length = 367
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 105/311 (33%), Positives = 180/311 (57%), Gaps = 7/311 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ+ ++ E+ L PL V +E+K+ LPILSN+LV + +S TD E+++
Sbjct: 1 MQITISREQ--FLKPLMQVSGAIERKHTLPILSNVLVEVKNGVLSMTGTDLEIELVANVT 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + +I + A+K +DI +SLP+ + + + + + SG+S+F+L TL A+++P
Sbjct: 59 LEEQVADASITLPAKKLLDICKSLPDGSLLQLSSQEHQLLLTSGQSRFSLTTLAAEDFPN 118
Query: 121 MTLNSKYD--FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGH 178
+ ++D EF +++ L+ +L +FS+A QD+RYYLNG+ I V++DGH
Sbjct: 119 L---EQWDGEVEFQITRLELRQLLEATHFSMANQDVRYYLNGMSFEVDNSEIKTVATDGH 175
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL Q + ++ +IIPRK V + RLL + P+ ++ +N I+I+ + S
Sbjct: 176 RLAIAQHQLGASLNTQRQLIIPRKGVQEIMRLLPADDEPLTIQFGSNHIRILDPEFTLTS 235
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KL+DG+F DY+ V+ +K NR L + QR+SI+SN+K +GVRL + LKI+
Sbjct: 236 KLVDGRFPDYRRVLPRGGDKLVNANREWLRSAFQRVSILSNEKFRGVRLNLSNGMLKISA 295
Query: 299 SSSNREKASST 309
++ +E+A T
Sbjct: 296 NNPEQEQAEET 306
>gi|237801663|ref|ZP_04590124.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331024522|gb|EGI04578.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 367
Score = 200 bits (508), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 164/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SL + I +++ + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLSNDALIDIKLDDSKLIVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
F L Q L+ ++ F++AQQD+RYYLNG+LL + AV++DGHRL ++
Sbjct: 125 SLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILRAVATDGHRLAMCSMSA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D + + +I+PRK + + RLL ++ V + + + I+ SKL+DGKF D
Sbjct: 185 DIEHADRHQVIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVMGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKI 293
>gi|238898808|ref|YP_002924490.1| DNA polymerase III, beta-subunit [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
gi|229466568|gb|ACQ68342.1| DNA polymerase III, beta-subunit [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
Length = 368
Score = 200 bits (508), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 175/301 (58%), Gaps = 4/301 (1%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN-- 65
E+ +L PLQ VIS + + +PIL N+L+ N + +TD ++++ + + +
Sbjct: 6 EREHLLKPLQQVISPLSARPTMPILGNLLLQVNENVLFLTATDLQMEMVVRVVLSHSDLH 65
Query: 66 SSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
S + V ARKF DI R L E +T+ ++ + + SG+S+F+L TL + +P + +
Sbjct: 66 ESGSTTVPARKFFDIWRGLLEGSTITVTLDGDRLLVYSGRSRFSLSTLPSSGFPGLD-DW 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
K F+L Q+TLK +++ FS+A QD+RYYLNG+L + K + V++DGHRL +
Sbjct: 125 KTQVAFSLPQETLKKLIDATQFSMAHQDVRYYLNGMLFETENKELRTVATDGHRLAVCSM 184
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKF 245
+ D+ S S +I+PRK V L RLLE +PV+L I + I+ N+ KLID +F
Sbjct: 185 STDETLPSYS-VIVPRKGVIELGRLLEASVHPVKLHIGEHNIRAHLDNLTFTCKLIDARF 243
Query: 246 LDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREK 305
DY+ V+ K + L ++ R++I+SN+K +GVRL + N +KIT ++ +E+
Sbjct: 244 PDYRRVLPKNPNKILEAKCDLLKQAFSRVAILSNEKFRGVRLYLSHNQMKITANNPEQEE 303
Query: 306 A 306
A
Sbjct: 304 A 304
>gi|70733515|ref|YP_257154.1| DNA polymerase III subunit beta [Pseudomonas protegens Pf-5]
gi|68347814|gb|AAY95420.1| DNA polymerase III, beta subunit [Pseudomonas protegens Pf-5]
Length = 367
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 160/289 (55%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
L Q L+ ++ F++AQQD+RYYLNG+LL I AV++DGHRL +
Sbjct: 125 SLTCQLEQSRLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGIIRAVATDGHRLAMCSMQA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL + V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKI 293
>gi|303250481|ref|ZP_07336678.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307251523|ref|ZP_07533430.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307256023|ref|ZP_07537811.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|302650469|gb|EFL80628.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306860987|gb|EFM92993.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306865445|gb|EFM97340.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
Length = 367
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/319 (33%), Positives = 184/319 (57%), Gaps = 12/319 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYT- 59
MQ + E+ +L PLQ V ++ + LP+++NIL+ +++S +TD EV++TT
Sbjct: 1 MQFTITREQ--LLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTATDLEVELTTVAT 58
Query: 60 ---AVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAK 116
AV + + A+KF+DI RSLPE +++ E +++ +SKF L TL A
Sbjct: 59 LEQAVDFAG---KFTIPAKKFLDICRSLPEDSSISVQFEEDRALVRAARSKFNLATLPAS 115
Query: 117 EYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSD 176
+YP + ++ K + +F++ Q TL +++ FS+A QD RY+LNG+ + + V++D
Sbjct: 116 DYPNL-MDWKPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLRTVATD 174
Query: 177 GHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEI 236
GHRL + ++++ + S +I+PRK V L RL+ + V L+I + +++ + +
Sbjct: 175 GHRLAVCTMALNQELLTHS-VIVPRKAVLELSRLVAVSDETVRLEIGTSNLRVSMNGVVF 233
Query: 237 ISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
SKLIDG+F DY+ V+ ++ L R+L R +I+SN+K +GVRL + N LKI
Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKI 293
Query: 297 TVSSSNREKASS-TDLIYH 314
T ++ +E+A D+ Y
Sbjct: 294 TANNPEQEEAEEIIDVAYQ 312
>gi|398853388|ref|ZP_10609991.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM80]
gi|398239919|gb|EJN25617.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM80]
Length = 367
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 162/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ + +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPAET 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GSITVPARKLMDICKSLPNDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+L Q L+ ++ F++AQQD+RYYLNG+LL + AV++DGHRL +
Sbjct: 125 SLTCSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSSGLMRAVATDGHRLAMCSMKA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+I+PRK + L RLL E V + + + I+ SKL+DGKF D
Sbjct: 185 AIDHPDRHQVIVPRKGILELARLLTEPEGTVAIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKI 293
>gi|71736736|ref|YP_272317.1| DNA polymerase III subunit beta [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|416019764|ref|ZP_11566523.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. glycinea
str. B076]
gi|416023707|ref|ZP_11567955.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. glycinea
str. race 4]
gi|422406672|ref|ZP_16483695.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. glycinea
str. race 4]
gi|422596723|ref|ZP_16671003.1| DNA polymerase III subunit beta [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|422639939|ref|ZP_16703367.1| DNA polymerase III subunit beta [Pseudomonas syringae Cit 7]
gi|422647966|ref|ZP_16711092.1| DNA polymerase III subunit beta [Pseudomonas syringae pv.
maculicola str. ES4326]
gi|440743522|ref|ZP_20922831.1| DNA polymerase III subunit beta [Pseudomonas syringae BRIP39023]
gi|71557289|gb|AAZ36500.1| DNA polymerase III, beta subunit [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320321689|gb|EFW77788.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. glycinea
str. B076]
gi|320331109|gb|EFW87080.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330881907|gb|EGH16056.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330952331|gb|EGH52591.1| DNA polymerase III subunit beta [Pseudomonas syringae Cit 7]
gi|330961506|gb|EGH61766.1| DNA polymerase III subunit beta [Pseudomonas syringae pv.
maculicola str. ES4326]
gi|330987020|gb|EGH85123.1| DNA polymerase III subunit beta [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|440375287|gb|ELQ11997.1| DNA polymerase III subunit beta [Pseudomonas syringae BRIP39023]
Length = 367
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 164/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SL + I +++ + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLSNDALIDIKLDDSKLIVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
F L Q L+ ++ F++AQQD+RYYLNG+LL + AV++DGHRL ++
Sbjct: 125 SLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILRAVATDGHRLAMCSMSA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D + + +I+PRK + + RLL ++ V + + + I+ SKL+DGKF D
Sbjct: 185 DIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKI 293
>gi|389680382|ref|ZP_10171732.1| DNA polymerase III, beta subunit [Pseudomonas chlororaphis O6]
gi|388555487|gb|EIM18730.1| DNA polymerase III, beta subunit [Pseudomonas chlororaphis O6]
Length = 367
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 160/289 (55%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
L Q L+ ++ F++AQQD+RYYLNG+LL I AV++DGHRL +
Sbjct: 125 SLTCQLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGIIRAVATDGHRLAMCSMQA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL + V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKI 293
>gi|170719189|ref|YP_001746877.1| DNA polymerase III subunit beta [Pseudomonas putida W619]
gi|169757192|gb|ACA70508.1| DNA polymerase III, beta subunit [Pseudomonas putida W619]
Length = 367
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 163/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDVLIDIKVDEQKLLVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
L Q L+ ++ F++AQQD+RYYLNG+LL + + AVS+DGHRL ++
Sbjct: 125 SLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLRAVSTDGHRLALCSMSA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ +I+PRK + L RLL + E V + + + I+ SKL+DGKF D
Sbjct: 185 AIEQDERHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRANTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVIGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLKI 293
>gi|422921258|ref|ZP_16954507.1| DNA polymerase III, beta subunit [Vibrio cholerae BJG-01]
gi|341649447|gb|EGS73423.1| DNA polymerase III, beta subunit [Vibrio cholerae BJG-01]
Length = 366
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 178/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ ++S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLEGEFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARKF+DI R LP++ +T+ +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPASDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ + +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVAQAQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F II+PRK V L +LL+ E PV L+I ++ ++ ++ SKL+DG+F D
Sbjct: 185 GADFEQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ +L ++ R +I+SN+K +GVR+ + N ++IT ++ +E+A
Sbjct: 244 YRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITANNPEQEEA 302
>gi|395495784|ref|ZP_10427363.1| DNA polymerase III subunit beta [Pseudomonas sp. PAMC 25886]
gi|395800071|ref|ZP_10479350.1| DNA polymerase III subunit beta [Pseudomonas sp. Ag1]
gi|421140878|ref|ZP_15600874.1| DNA polymerase III subunit beta [Pseudomonas fluorescens BBc6R8]
gi|395335913|gb|EJF67775.1| DNA polymerase III subunit beta [Pseudomonas sp. Ag1]
gi|404508080|gb|EKA22054.1| DNA polymerase III subunit beta [Pseudomonas fluorescens BBc6R8]
Length = 367
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 162/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+L Q L+ ++ F++AQQD+RYYLNG+LL + I AV++DGHRL +
Sbjct: 125 SLTCSLEQSRLRRLIERTSFAMAQQDVRYYLNGMLLEVSEGIIRAVATDGHRLAMCSMKA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL + V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVIGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKI 293
>gi|388467091|ref|ZP_10141301.1| DNA polymerase III, beta subunit [Pseudomonas synxantha BG33R]
gi|388010671|gb|EIK71858.1| DNA polymerase III, beta subunit [Pseudomonas synxantha BG33R]
Length = 367
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 162/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+L Q L+ ++ F++AQQD+RYYLNG+LL + I AV++DGHRL +
Sbjct: 125 SLTCSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSEGIIRAVATDGHRLAMCSMRA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL + V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVIGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKI 293
>gi|419955898|ref|ZP_14472018.1| DNA polymerase III subunit beta [Pseudomonas stutzeri TS44]
gi|387967318|gb|EIK51623.1| DNA polymerase III subunit beta [Pseudomonas stutzeri TS44]
Length = 367
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 164/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVTLEDAAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + IKSG+S+FTL +L A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPSDALIDIRLDEHKVLIKSGRSRFTLSSLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
F++ Q L+ ++ F++AQQD+RYYLNG+LL + V++DGHRL +
Sbjct: 125 SLGFSVEQGKLRRLIERSSFAMAQQDVRYYLNGMLLEVSNGMLRTVATDGHRLAMCSMQA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + +I+PRK + L RLL ++ V + + + ++ SKL+DGKF D
Sbjct: 185 GIEQADRHQVIVPRKGILELARLLTEQDAEVSIMLGQHHVRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R +L + R +I+SN+K +G+RL ++ LKI
Sbjct: 245 YERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLESGLLKI 293
>gi|375129455|ref|YP_004991551.1| DNA polymerase III subunit beta [Vibrio furnissii NCTC 11218]
gi|315178625|gb|ADT85539.1| DNA polymerase III, beta chain [Vibrio furnissii NCTC 11218]
Length = 366
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ + PLQ V + + LPIL N+L+ ++S +TD EV++ + + +
Sbjct: 6 ERSHFIKPLQQVSGTLGGRATLPILGNLLLKVEDNQLSMTATDLEVELVSRVTLEGDFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF+DI R LP+ +T+ +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GTTTVPARKFLDICRGLPDAAVITVVLEGDRVQVRSGRSRFSLATLPASDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVELSLTQGELRGLVEKTQFSMANQDVRYYLNGMLFEIDGSTLRSVATDGHRMAVSQTEL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F++ II+PRK V L +LL+ E PV L+I ++ ++ +N SKL+DG+F D
Sbjct: 185 GADFAN-KQIIVPRKGVLELVKLLDALEQPVVLQIGSSNLRAEVNNFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ ++L ++ R +I+SN+K +GVR+ + ++IT ++ +E+A
Sbjct: 244 YRRVLPQNTNKTLQAGCDELRQAFSRAAILSNEKFRGVRVNLDGGEMRITANNPEQEEA 302
>gi|387891257|ref|YP_006321554.1| DNA polymerase III subunit beta [Pseudomonas fluorescens A506]
gi|423689092|ref|ZP_17663612.1| DNA polymerase III, beta subunit [Pseudomonas fluorescens SS101]
gi|387161478|gb|AFJ56677.1| DNA polymerase III, beta subunit [Pseudomonas fluorescens A506]
gi|387999294|gb|EIK60623.1| DNA polymerase III, beta subunit [Pseudomonas fluorescens SS101]
Length = 367
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 162/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+L Q L+ ++ F++AQQD+RYYLNG+LL + I AV++DGHRL +
Sbjct: 125 SLTCSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSEGIIRAVATDGHRLAMCSMRA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL + V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVVGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKI 293
>gi|424789086|ref|ZP_18215797.1| DNA polymerase III beta chain [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|433677630|ref|ZP_20509589.1| DNA polymerase III subunit beta [Xanthomonas translucens pv.
translucens DSM 18974]
gi|422798774|gb|EKU26812.1| DNA polymerase III beta chain [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|430817248|emb|CCP40004.1| DNA polymerase III subunit beta [Xanthomonas translucens pv.
translucens DSM 18974]
Length = 366
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/295 (35%), Positives = 174/295 (58%), Gaps = 10/295 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A L PL V+++VE++ LP+L+N LV + ++S TD EV++ + AV
Sbjct: 6 QREAFLKPLAQVVNVVERRQTLPVLANFLVQVHDGQLSLTGTDLEVEMVSRIAVDDAQDG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ ARK +I+R+LP+ K+T+ + +++G+S+FTL TL A ++P S
Sbjct: 66 -ETTIPARKLFEIIRALPDGSKITVTQNGDKITVQAGRSRFTLATLPANDFP-----SVD 119
Query: 128 DFEFT----LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
+ E T + + LK ++ F++AQQD+RYYLNGLL + + V++DGHRL
Sbjct: 120 EVEATERVLVPEAALKELIERTAFAMAQQDVRYYLNGLLFDLHDQTLRCVATDGHRLALC 179
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDG 243
+ ++ + II+PRK V LQRLLE + VEL++ + +++ ++ SKLIDG
Sbjct: 180 ETALENASGAKRQIIVPRKGVTELQRLLEGGDREVELEVGRSHVRVKRDDVTFTSKLIDG 239
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
+F DY+ VI ++ ++R L +LQR +I+SN+K +GVR+ + P LKI+
Sbjct: 240 RFPDYEAVIPIGADREVKLDREALRAALQRAAILSNEKYRGVRVEVSPGQLKISA 294
>gi|59710617|ref|YP_203393.1| DNA polymerase III subunit beta [Vibrio fischeri ES114]
gi|59478718|gb|AAW84505.1| DNA polymerase III, beta subunit [Vibrio fischeri ES114]
Length = 366
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L PLQ V + + LPIL NIL+ + ++S +TD EV++ + + +
Sbjct: 6 ERSLLLKPLQQVSGALGGRPSLPILGNILLQVENGQLSMTATDLEVELISKITLEGDFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ V +RKF+DI R LP++ +TI +E + ++SG+S+FTL TL A ++P + +
Sbjct: 66 GAVTVPSRKFLDICRGLPDSANITIVLEGDRVLVRSGRSRFTLATLPANDFPNIE-GWES 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E TLSQ L+ ++ FS+A QD+RYYLNG++ Q +V++DGHR+ + +
Sbjct: 125 EVEITLSQAQLRKLIESTQFSMANQDVRYYLNGMMFETQGNIFRSVATDGHRMAVCNMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + +I+PRK + L RLL++ E V L+ N+ ++ +N SKL+DG+F D
Sbjct: 185 ESELPE-QQVIMPRKGIQELVRLLDSPEQSVTLQFGNSNVRAEVNNFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ + ++L ++ R +I+SN+K +GVR+ + N ++IT ++ +E+A
Sbjct: 244 YRRVMPQSSNKTLEADCDELRQAFARAAILSNEKFRGVRVNLANNQMRITANNPEQEEA 302
>gi|375264043|ref|YP_005021486.1| DNA polymerase III subunit beta [Vibrio sp. EJY3]
gi|369839368|gb|AEX20512.1| DNA polymerase III subunit beta [Vibrio sp. EJY3]
Length = 366
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ +S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEENVLSMTATDLEVELVSKVTLEGDFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V +RKF+DI R LP+ +T +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPSRKFLDICRGLPDDAIITFVLEGDRVQVRSGRSRFSLATLPANDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +LSQ L+ +++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVSQTEL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +L++ E PV L+I N+ ++ +N SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGNSNVRAEVNNFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ + + ++L ++ R +I+SN+K +GVR+ + ++IT ++ +E+A
Sbjct: 244 YRRVLPQSTNKTLIASCDELRQAFSRAAILSNEKFRGVRVNLADTEMRITANNPEQEEA 302
>gi|53729133|ref|ZP_00134099.2| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog)
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|126207490|ref|YP_001052715.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|165975459|ref|YP_001651052.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|190149271|ref|YP_001967796.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|307244803|ref|ZP_07526902.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307249201|ref|ZP_07531198.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307262582|ref|ZP_07544213.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|407691596|ref|YP_006816385.1| DNA polymerase III subunit beta [Actinobacillus suis H91-0380]
gi|126096282|gb|ABN73110.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|165875560|gb|ABY68608.1| DNA polymerase III beta chain [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|189914402|gb|ACE60654.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|306854248|gb|EFM86454.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306858725|gb|EFM90784.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306872080|gb|EFN03793.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|407387653|gb|AFU18146.1| DNA polymerase III subunit beta [Actinobacillus suis H91-0380]
Length = 367
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/319 (33%), Positives = 183/319 (57%), Gaps = 12/319 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYT- 59
MQ + E+ +L PLQ V ++ + LP+++NIL+ +++S TD EV++TT
Sbjct: 1 MQFTITREQ--LLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTGTDLEVELTTVAT 58
Query: 60 ---AVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAK 116
AV + + A+KF+DI RSLPE +++ E +++ +SKF L TL A
Sbjct: 59 LEQAVDFAG---KFTIPAKKFLDICRSLPEDSSISVQFEEDRALVRAARSKFNLATLPAS 115
Query: 117 EYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSD 176
+YP + ++ K + +F++ Q TL +++ FS+A QD RY+LNG+ + + V++D
Sbjct: 116 DYPNL-MDWKPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLRTVATD 174
Query: 177 GHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEI 236
GHRL + ++++ + S +I+PRK V L RL+ + V L+I + +++ + +
Sbjct: 175 GHRLAVCTMALNQELLTHS-VIVPRKAVLELSRLVAVSDETVRLEIGTSNLRVSMNGVVF 233
Query: 237 ISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
SKLIDG+F DY+ V+ ++ L R+L R +I+SN+K +GVRL + N LKI
Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKI 293
Query: 297 TVSSSNREKASS-TDLIYH 314
T ++ +E+A D+ Y
Sbjct: 294 TANNPEQEEAEEIIDVAYQ 312
>gi|414071432|ref|ZP_11407401.1| DNA polymerase III subunit beta [Pseudoalteromonas sp. Bsw20308]
gi|410806152|gb|EKS12149.1| DNA polymerase III subunit beta [Pseudoalteromonas sp. Bsw20308]
Length = 367
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 175/300 (58%), Gaps = 7/300 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ+ ++ ++ L PL V +E+K+ LPILSN+L+ + ++S TD E+++ +
Sbjct: 1 MQITISRQQ--FLKPLVQVSGAIERKHTLPILSNVLLVVENGQLSMTGTDLEIELVSGVF 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
VG + + + A+K +DI +SLP+ +T+ ++ + + SGKS+F+L TL A ++P
Sbjct: 59 VGDDIADTKLTLPAKKLLDICKSLPDGSDITLSLQEHQLLLTSGKSRFSLTTLSADDFPN 118
Query: 121 MTLNSKYD--FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGH 178
+ ++D EF L++ L+ +L +FS+A QD+RYYLNG+ +I V++DGH
Sbjct: 119 L---EEWDGEVEFQLTRLELRKLLESTHFSMANQDVRYYLNGMSFEVDNTDIKTVATDGH 175
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL Q + + ++ +IIPRK V + RL+ + V ++ N I+II S
Sbjct: 176 RLAIAQKQLTQSLNTQRQLIIPRKGVQEIMRLMVADDELVTIQFGANHIRIIDLEFTFTS 235
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KL+DG+F DY+ V+ +K NR L + QR+SI+SN+K +GVRL + LKIT
Sbjct: 236 KLVDGRFPDYRRVLPRGGDKVITANREWLRNAFQRVSILSNEKFRGVRLNLSNGLLKITA 295
>gi|399006494|ref|ZP_10709018.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM17]
gi|398122011|gb|EJM11618.1| DNA polymerase III, beta subunit [Pseudomonas sp. GM17]
Length = 367
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 160/289 (55%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
L Q L+ ++ F++AQQD+RYYLNG+LL I AV++DGHRL +
Sbjct: 125 SLTCQLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGIIRAVATDGHRLAMCSMQA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL + V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQPDRHQVIVPRKGILELARLLTEPDGIVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKI 293
>gi|254363201|ref|ZP_04979250.1| DNA-directed DNA polymerase III beta subunit [Mannheimia
haemolytica PHL213]
gi|452745925|ref|ZP_21945757.1| DNA polymerase III subunit beta [Mannheimia haemolytica serotype 6
str. H23]
gi|153095095|gb|EDN75646.1| DNA-directed DNA polymerase III beta subunit [Mannheimia
haemolytica PHL213]
gi|452086064|gb|EME02455.1| DNA polymerase III subunit beta [Mannheimia haemolytica serotype 6
str. H23]
Length = 367
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 184/310 (59%), Gaps = 11/310 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYT- 59
MQ+ + E+ +L PLQ V ++ + LP+++N+L+ ++S TD EV++TT
Sbjct: 1 MQITITREQ--LLKPLQQVCGVLSSRPTLPVINNLLLEIEGNRLSLTGTDLEVELTTQAQ 58
Query: 60 ---AVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAK 116
AV + + A+KF+DI +SLP+ +++ E IK+G+SKF+L TL A
Sbjct: 59 LLQAVDFAG---KFTIPAKKFLDISKSLPDDSVISVQFEEDKAIIKAGRSKFSLATLPAS 115
Query: 117 EYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSD 176
+YP + ++ K + +F++ Q TL +++ FS+A QD RY+LNG+ + + V++D
Sbjct: 116 DYPNL-MDWKPEVDFSIDQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLRTVATD 174
Query: 177 GHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEI 236
GHRL + ++++ + S +I+PRK V L RL+ + + V L+I ++ I+I + I
Sbjct: 175 GHRLAVCTMVLNQELLTHS-VIVPRKAVLELSRLVASNDETVRLEIGSSNIRITMNGIVF 233
Query: 237 ISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
SKLIDG+F DY+ V+ ++ L R+L R +I+SN+K +GVRL + N LKI
Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEAETETLKRALMRAAILSNEKFRGVRLTLSNNLLKI 293
Query: 297 TVSSSNREKA 306
T ++ +E+A
Sbjct: 294 TANNPEQEEA 303
>gi|332533699|ref|ZP_08409558.1| DNA polymerase III beta subunit [Pseudoalteromonas haloplanktis
ANT/505]
gi|332036863|gb|EGI73324.1| DNA polymerase III beta subunit [Pseudoalteromonas haloplanktis
ANT/505]
Length = 367
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 175/300 (58%), Gaps = 7/300 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ+ ++ ++ L PL V +E+K+ LPILSN+L+ + ++S TD E+++ +
Sbjct: 1 MQITISRQQ--FLKPLVQVSGAIERKHTLPILSNVLLVVENGQLSMTGTDLEIELVSGVF 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
VG + + + A+K +DI +SLP+ +T+ ++ + + SGKS+F+L TL A ++P
Sbjct: 59 VGDDIADTKLTLPAKKLLDICKSLPDGSDITLSLQEHQLLLTSGKSRFSLTTLSADDFPN 118
Query: 121 MTLNSKYD--FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGH 178
+ ++D EF L++ L+ +L +FS+A QD+RYYLNG+ +I V++DGH
Sbjct: 119 L---EQWDGEVEFQLTRLELRKLLESTHFSMANQDVRYYLNGMSFEVDNTDIKTVATDGH 175
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL Q + + ++ +IIPRK V + RL+ + V ++ N I+II S
Sbjct: 176 RLAIAQKQLTQSLNTQRQLIIPRKGVQEIMRLMVADDELVTIQFGANHIRIIDIEFTFTS 235
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KL+DG+F DY+ V+ +K NR L + QR+SI+SN+K +GVRL + LKIT
Sbjct: 236 KLVDGRFPDYRRVLPRGGDKVITANREWLRNAFQRVSILSNEKFRGVRLNLSNGLLKITA 295
>gi|421348894|ref|ZP_15799265.1| DNA polymerase III, beta subunit [Vibrio cholerae HE-25]
gi|395957087|gb|EJH67672.1| DNA polymerase III, beta subunit [Vibrio cholerae HE-25]
Length = 366
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ ++S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLEGEFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARKF+DI R LP++ +T+ +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPANDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ + +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVAQAQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +LL+ E PV L+I ++ ++ ++ SKL+DG+F D
Sbjct: 185 GVDFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ +L ++ R +I+SN+K +GVR+ + N ++IT ++ +E+A
Sbjct: 244 YRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITANNPEQEEA 302
>gi|307260452|ref|ZP_07542147.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306869855|gb|EFN01637.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 367
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/319 (33%), Positives = 183/319 (57%), Gaps = 12/319 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYT- 59
MQ + E+ +L PLQ V ++ + LP+++NIL+ +++S TD EV++TT
Sbjct: 1 MQFTITREQ--LLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTGTDLEVELTTVAI 58
Query: 60 ---AVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAK 116
AV + + A+KF+DI RSLPE +++ E +++ +SKF L TL A
Sbjct: 59 LEQAVDFAG---KFTIPAKKFLDICRSLPEDSSISVQFEEDRALVRAARSKFNLATLPAS 115
Query: 117 EYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSD 176
+YP + ++ K + +F++ Q TL +++ FS+A QD RY+LNG+ + + V++D
Sbjct: 116 DYPNL-MDWKPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLRTVATD 174
Query: 177 GHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEI 236
GHRL + ++++ + S +I+PRK V L RL+ + V L+I + +++ + +
Sbjct: 175 GHRLAVCTMALNQELLTHS-VIVPRKAVLELSRLVAVSDETVRLEIGTSNLRVSMNGVVF 233
Query: 237 ISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
SKLIDG+F DY+ V+ ++ L R+L R +I+SN+K +GVRL + N LKI
Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKI 293
Query: 297 TVSSSNREKASS-TDLIYH 314
T ++ +E+A D+ Y
Sbjct: 294 TANNPEQEEAEEIIDVAYQ 312
>gi|392535932|ref|ZP_10283069.1| DNA polymerase III subunit beta [Pseudoalteromonas arctica A
37-1-2]
Length = 367
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 175/300 (58%), Gaps = 7/300 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ+ ++ ++ L PL V +E+K+ LPILSN+L+ + ++S TD E+++ +
Sbjct: 1 MQITISRQQ--FLKPLVQVSGAIERKHTLPILSNVLLVVENGQLSMTGTDLEIELVSGVF 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
VG + + + A+K +DI +SLP+ +T+ ++ + + SGKS+F+L TL A ++P
Sbjct: 59 VGDDIADTKLTLPAKKLLDICKSLPDGSDITLSLQEHQLLLTSGKSRFSLTTLSADDFPN 118
Query: 121 MTLNSKYD--FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGH 178
+ ++D EF L++ L+ +L +FS+A QD+RYYLNG+ +I V++DGH
Sbjct: 119 L---EEWDGEVEFQLTRLELRKLLESTHFSMANQDVRYYLNGMSFEVDNTDIKTVATDGH 175
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL Q + + ++ +IIPRK V + RL+ + V ++ N I+II S
Sbjct: 176 RLAIAQKQLTQSLNTQRQLIIPRKGVQEIMRLMVADDELVTIQFGANHIRIIDIEFTFTS 235
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KL+DG+F DY+ V+ +K NR L + QR+SI+SN+K +GVRL + LKIT
Sbjct: 236 KLVDGRFPDYRRVLPRGGDKVITANREWLRNAFQRVSILSNEKFRGVRLNLSNGLLKITA 295
>gi|359455346|ref|ZP_09244578.1| DNA polymerase III subunit beta [Pseudoalteromonas sp. BSi20495]
gi|358047576|dbj|GAA80827.1| DNA polymerase III subunit beta [Pseudoalteromonas sp. BSi20495]
Length = 367
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 175/300 (58%), Gaps = 7/300 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ+ ++ ++ L PL V +E+K+ LPILSN+L+ + ++S TD E+++ +
Sbjct: 1 MQITISRQQ--FLKPLVQVSGAIERKHTLPILSNVLLVVENGQLSMTGTDLEIELVSGVF 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
VG + + + A+K +DI +SLP+ +T+ ++ + + SGKS+F+L TL A ++P
Sbjct: 59 VGDDIADTKLTLPAKKLLDICKSLPDGSDITLSLQEHQLLLTSGKSRFSLTTLSADDFPN 118
Query: 121 MTLNSKYD--FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGH 178
+ ++D EF L++ L+ +L +FS+A QD+RYYLNG+ +I V++DGH
Sbjct: 119 L---EEWDGEVEFQLTRLELRKLLESTHFSMANQDVRYYLNGMSFEVDNTDIKTVATDGH 175
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL Q + + ++ +IIPRK V + RL+ + V ++ N I+II S
Sbjct: 176 RLAIAQKQLTQSLNTQRQLIIPRKGVQEIMRLMVADDELVTIQFGANHIRIIDIEFTFTS 235
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KL+DG+F DY+ V+ +K NR L + QR+SI+SN+K +GVRL + LKIT
Sbjct: 236 KLVDGRFPDYRRVLPRGGDKVITANREWLRNAFQRVSILSNEKFRGVRLNLSNGLLKITA 295
>gi|416056673|ref|ZP_11579937.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|444334620|ref|ZP_21150108.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
gi|348001866|gb|EGY42594.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|443550147|gb|ELT58594.1| DNA polymerase III, beta subunit [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
Length = 366
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/306 (33%), Positives = 177/306 (57%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ +++ E +L PLQ V ++ + +P+L+N+L+ + +++ TD EV+++T T
Sbjct: 1 MQFIISREN--LLKPLQQVCGVLNSRPNIPVLNNVLLQIENNQLNITGTDLEVELSTQTP 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + A+KF+D+ RSLP ++ + E ++S +SKF L TL ++YP
Sbjct: 59 LLHAEQDGKFTIPAKKFLDLCRSLPGNAEIAVTFEEDRAIVRSDRSKFNLSTLPVEDYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+T + + + +FTL Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHRL
Sbjct: 119 LT-DWQSEVDFTLEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ +++ + S +I+PRK V L RLLE + P L+I N ++I +NI SKL
Sbjct: 178 AVCTIPLEQDLQTHS-VILPRKGVLELARLLEPSDQPARLQIGTNNLRIQLNNITFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ + L ++ R +I+SN++ + VRL + N LKIT ++
Sbjct: 237 IDGRFPDYRRVLPRNATRIVEAGWETLKQAFVRAAILSNERFRSVRLQLSENQLKITATN 296
Query: 301 SNREKA 306
+E A
Sbjct: 297 PEQEVA 302
>gi|261493281|ref|ZP_05989808.1| DNA-directed DNA polymerase III beta subunit [Mannheimia
haemolytica serotype A2 str. BOVINE]
gi|261496475|ref|ZP_05992855.1| DNA-directed DNA polymerase III beta subunit [Mannheimia
haemolytica serotype A2 str. OVINE]
gi|261307678|gb|EEY09001.1| DNA-directed DNA polymerase III beta subunit [Mannheimia
haemolytica serotype A2 str. OVINE]
gi|261311131|gb|EEY12307.1| DNA-directed DNA polymerase III beta subunit [Mannheimia
haemolytica serotype A2 str. BOVINE]
Length = 369
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 184/310 (59%), Gaps = 11/310 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYT- 59
MQ+ + E+ +L PLQ V ++ + LP+++N+L+ ++S TD EV++TT
Sbjct: 3 MQITITREQ--LLKPLQQVCGVLSSRPTLPVINNLLLEIEGNRLSLTGTDLEVELTTQAQ 60
Query: 60 ---AVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAK 116
AV + + A+KF+DI +SLP+ +++ E IK+G+SKF+L TL A
Sbjct: 61 LLQAVDFAG---KFTIPAKKFLDISKSLPDDSVISVQFEEDKAIIKAGRSKFSLATLPAS 117
Query: 117 EYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSD 176
+YP + ++ K + +F++ Q TL +++ FS+A QD RY+LNG+ + + V++D
Sbjct: 118 DYPNL-MDWKPEVDFSIDQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLRTVATD 176
Query: 177 GHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEI 236
GHRL + ++++ + S +I+PRK V L RL+ + + V L+I ++ I+I + I
Sbjct: 177 GHRLAVCTMVLNQELLTHS-VIVPRKAVLELSRLVASNDETVRLEIGSSNIRITMNGIVF 235
Query: 237 ISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
SKLIDG+F DY+ V+ ++ L R+L R +I+SN+K +GVRL + N LKI
Sbjct: 236 TSKLIDGRFPDYRRVLPRNADRILEAETETLKRALMRAAILSNEKFRGVRLTLSNNLLKI 295
Query: 297 TVSSSNREKA 306
T ++ +E+A
Sbjct: 296 TANNPEQEEA 305
>gi|262273131|ref|ZP_06050948.1| DNA polymerase III beta subunit [Grimontia hollisae CIP 101886]
gi|262222887|gb|EEY74195.1| DNA polymerase III beta subunit [Grimontia hollisae CIP 101886]
Length = 366
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 171/298 (57%), Gaps = 2/298 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
++ L PLQ V + + LPIL NIL+ S ++S TD EV++ +
Sbjct: 7 RDQFLKPLQQVSGALGGRPTLPILGNILLKVESGQLSMTCTDLEVELIANLPLESEAQEG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
+ V +RKF+DI R LP++ ++ +E I+SG+S+FTL TL A ++P + + +
Sbjct: 67 AVTVPSRKFLDICRGLPDSASISFSLEGDRAVIRSGRSRFTLSTLPAADFPNIE-DWQST 125
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
EFTL Q L+ ++ FS+A QD+RY+LNG+LL + + +V++DGHR+ +D
Sbjct: 126 VEFTLPQGKLRQLMESTAFSMANQDVRYFLNGMLLETEGTTLRSVATDGHRMAVGTTLLD 185
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ ++ +I+PRK V L R+L+N + PV ++I + I+ + + SKL+DG+F DY
Sbjct: 186 NELAA-QQVIVPRKGVTELMRMLDNPDAPVTIQIGSANIRALVNQFVFTSKLVDGRFPDY 244
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ V+ K + L ++ R +I+SN+K +GVRL + L+I+ + +E+A
Sbjct: 245 RRVLPQSSNKIMEAGCDDLRQAFSRAAILSNEKFRGVRLNLSAGQLRISAHNPEQEEA 302
>gi|422296213|ref|ZP_16383887.1| DNA polymerase III subunit beta [Pseudomonas avellanae BPIC 631]
gi|422589547|ref|ZP_16664208.1| DNA polymerase III subunit beta [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|422651099|ref|ZP_16713897.1| DNA polymerase III subunit beta [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330876356|gb|EGH10505.1| DNA polymerase III subunit beta [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330964180|gb|EGH64440.1| DNA polymerase III subunit beta [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|407992676|gb|EKG34252.1| DNA polymerase III subunit beta [Pseudomonas avellanae BPIC 631]
Length = 367
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 164/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SL + I +++ + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLSNDALIDIKLDDSKLIVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
F L Q L+ ++ F++AQQD+RYYLNG+LL + AV++DGHRL ++
Sbjct: 125 SLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILRAVATDGHRLAMCSMSA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D + + +I+PRK + + RLL ++ V + + + I+ SKL+DGKF D
Sbjct: 185 DIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKI 293
>gi|345428645|ref|YP_004821761.1| DNA polymerase III subunit beta [Haemophilus parainfluenzae T3T1]
gi|301154704|emb|CBW14167.1| DNA polymerase III, beta subunit [Haemophilus parainfluenzae T3T1]
Length = 366
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 179/306 (58%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ +++ TD EV++++YT
Sbjct: 1 MQFSISREN--LLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSYTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + A+KF+DI R+L + ++T+ E ++SG+SKF L TL A+EYP
Sbjct: 59 LSSSTADGAFTIPAKKFLDICRTLSDEFEITVTFEEDRAIVESGRSKFNLTTLPAEEYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+T + + + +F L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHRL
Sbjct: 119 LT-DWQSEVDFALPQSTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ +D+ + S +I+PRK V L RLLE+ + L+I N ++I ++I SKL
Sbjct: 178 AVCTIELDQDLQTHS-VILPRKGVLELNRLLESSDELARLQIGTNNLRIHLNHIVFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ + N L ++ R SI+SN++++ VRL + N LKIT S+
Sbjct: 237 IDGRFPDYRRVLPRNATRIVEGNWETLKQAFVRASILSNERVRSVRLNLSENQLKITASN 296
Query: 301 SNREKA 306
E A
Sbjct: 297 PEHEVA 302
>gi|325577774|ref|ZP_08148049.1| DNA-directed DNA polymerase III beta subunit [Haemophilus
parainfluenzae ATCC 33392]
gi|325160519|gb|EGC72645.1| DNA-directed DNA polymerase III beta subunit [Haemophilus
parainfluenzae ATCC 33392]
Length = 367
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 179/306 (58%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ +++ TD EV++++YT
Sbjct: 2 MQFSISREN--LLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSYTQ 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + A+KF+DI R+L + ++T+ E ++SG+SKF L TL A+EYP
Sbjct: 60 LSSSTADGAFTIPAKKFLDICRTLSDEFEITVTFEEDRAIVESGRSKFNLTTLPAEEYPN 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+T + + + +F L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHRL
Sbjct: 120 LT-DWQSEVDFALPQSTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRL 178
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ +D+ + S +I+PRK V L RLLE+ + L+I N ++I ++I SKL
Sbjct: 179 AVCTIELDQDLQTHS-VILPRKGVLELNRLLESSDELARLQIGTNNLRIHLNHIVFTSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ + N L ++ R SI+SN++++ VRL + N LKIT S+
Sbjct: 238 IDGRFPDYRRVLPRNATRIVEGNWETLKQAFVRASILSNERVRSVRLNLSENQLKITASN 297
Query: 301 SNREKA 306
E A
Sbjct: 298 PEHEVA 303
>gi|419802446|ref|ZP_14327633.1| DNA polymerase III, beta subunit [Haemophilus parainfluenzae HK262]
gi|419846000|ref|ZP_14369258.1| DNA polymerase III, beta subunit [Haemophilus parainfluenzae
HK2019]
gi|385190308|gb|EIF37756.1| DNA polymerase III, beta subunit [Haemophilus parainfluenzae HK262]
gi|386414630|gb|EIJ29182.1| DNA polymerase III, beta subunit [Haemophilus parainfluenzae
HK2019]
Length = 366
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 179/306 (58%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ +++ TD EV++++YT
Sbjct: 1 MQFSISREN--LLKPLQQVCGVLSSRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSYTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + A+KF+DI R+L + ++T+ E ++SG+SKF L TL A+EYP
Sbjct: 59 LSSSTADGAFTIPAKKFLDICRTLSDEFEITVTFEEDRAIVESGRSKFNLTTLPAEEYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+T + + + +F L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHRL
Sbjct: 119 LT-DWQSEVDFALPQSTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ +D+ + S +I+PRK V L RLLE+ + L+I N ++I ++I SKL
Sbjct: 178 AVCTIELDQDLQTHS-VILPRKGVLELNRLLESSDELARLQIGTNNLRIHLNHIVFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ + N L ++ R SI+SN++++ VRL + N LKIT S+
Sbjct: 237 IDGRFPDYRRVLPRNATRIVEGNWETLKQAFVRASILSNERVRSVRLNLSENQLKITASN 296
Query: 301 SNREKA 306
E A
Sbjct: 297 PEHEVA 302
>gi|429210970|ref|ZP_19202136.1| DNA polymerase III subunit beta [Pseudomonas sp. M1]
gi|428158384|gb|EKX04931.1| DNA polymerase III subunit beta [Pseudomonas sp. M1]
Length = 368
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 165/292 (56%), Gaps = 6/292 (2%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELIGRVTLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPSDALIDIRVDEQKLLVKAGRSRFTLSTLPANDFPSVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
F+L Q L+ +++ F++AQQD+RYYLNG+LL + AV++DGHRL +
Sbjct: 125 SLTFSLVQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVSSGTLRAVATDGHRLAM--CSF 182
Query: 188 DKKFSSCSD---IIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGK 244
D +I+PRK + L RLL ++ V++ + + I+ SKL+DGK
Sbjct: 183 TGGVPEAQDRHQVIVPRKGILELARLLTEQDGQVDIVLGQHHIRATTGEFTFTSKLVDGK 242
Query: 245 FLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
F DY+ V+ +K + +R L + R +I+SN+K +G+RL + LKI
Sbjct: 243 FPDYERVLPKGGDKLVIGDRQLLREAFSRTAILSNEKYRGIRLQLTSGLLKI 294
>gi|387773830|ref|ZP_10129115.1| DNA polymerase III, beta subunit [Haemophilus parahaemolyticus
HK385]
gi|386903651|gb|EIJ68458.1| DNA polymerase III, beta subunit [Haemophilus parahaemolyticus
HK385]
Length = 367
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 177/300 (59%), Gaps = 5/300 (1%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG-NSS 67
+ +L PLQ V ++ + LPI++NIL+ +++S TD EV+++T + + S
Sbjct: 7 REQLLKPLQQVCGVLASRPTLPIINNILLEVEGDRLSLTGTDLEVELSTQAQLAQAVDFS 66
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP-IMTLNSK 126
+ A+KF+DI +SLPE +++ E +K+G+SKF+L TL A EYP +M +
Sbjct: 67 GKFTIPAKKFLDISKSLPEDSLISVQFEEDKAIVKAGRSKFSLATLPASEYPNLMDWTPE 126
Query: 127 YDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVN 186
DF +L Q T +++ FS+A QD RY+LNG+ + + AV++DGHRL +
Sbjct: 127 VDF--SLEQATFARLIDATQFSMANQDARYFLNGMKFETEGNLLRAVATDGHRLAVCTMP 184
Query: 187 IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFL 246
+ ++ S S +I+PRK L RLL V L+I ++ I++ +++ SKLIDG+F
Sbjct: 185 LTQELVSHS-VIVPRKAALELSRLLSVSNEIVRLEIGSSNIRVTMNDVVFTSKLIDGRFP 243
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
DY+ V+ ++ + L R+L R +I+SN+K +GVRL ++ + LKIT ++ +E+A
Sbjct: 244 DYRRVLPRNADRILEADTEVLRRALMRAAILSNEKFRGVRLTLEQDVLKITANNPEQEEA 303
>gi|359442196|ref|ZP_09232070.1| DNA polymerase III subunit beta [Pseudoalteromonas sp. BSi20429]
gi|358035979|dbj|GAA68319.1| DNA polymerase III subunit beta [Pseudoalteromonas sp. BSi20429]
Length = 367
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 175/300 (58%), Gaps = 7/300 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ+ ++ ++ L PL V +E+K+ LPILSN+L+ + ++S TD E+++ +
Sbjct: 1 MQITISRQQ--FLKPLVQVSGAIERKHTLPILSNVLLVVENGQLSMTGTDLEIELVSGVF 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
VG + + + A+K +DI +SLP+ +T+ ++ + + SGKS+F+L TL A ++P
Sbjct: 59 VGDDIADTKLTLPAKKLLDICKSLPDGSDITLSLQEHQLLLTSGKSRFSLTTLSADDFPN 118
Query: 121 MTLNSKYD--FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGH 178
+ ++D EF L++ L+ +L +FS+A QD+RYYLNG+ +I V++DGH
Sbjct: 119 L---EEWDGEVEFQLTRLELRKLLESTHFSMANQDVRYYLNGMSFEVDNTDIKTVATDGH 175
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL Q + + ++ +IIPRK V + RL+ + V ++ N I+II S
Sbjct: 176 RLAIAQKQLTQSLNTQRQLIIPRKGVQEIMRLMVADDELVTIQFGANHIRIIDIEFTFTS 235
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KL+DG+F DY+ V+ +K NR L + QR+SI+SN+K +GVRL + LKIT
Sbjct: 236 KLVDGRFPDYRRVLPRGGDKVITANREWLRNAFQRVSILSNEKFRGVRLNLSNGLLKITA 295
>gi|257485598|ref|ZP_05639639.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|289628213|ref|ZP_06461167.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. aesculi
str. NCPPB 3681]
gi|289649103|ref|ZP_06480446.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. aesculi
str. 2250]
gi|422579883|ref|ZP_16655400.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|422682547|ref|ZP_16740812.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|330870076|gb|EGH04785.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|331011886|gb|EGH91942.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
Length = 367
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 164/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SL + I +++ + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLSNDALIDIKLDDSKLIVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
F L Q L+ ++ F++AQQD+RYYLNG+LL + AV++DGHRL ++
Sbjct: 125 SLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILRAVATDGHRLAMCSMSA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D + + +I+PRK + + RLL ++ V + + + I+ SKL+DGKF D
Sbjct: 185 DIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKI 293
>gi|71275533|ref|ZP_00651819.1| DNA polymerase III, beta chain [Xylella fastidiosa Dixon]
gi|170729253|ref|YP_001774686.1| DNA polymerase III subunit beta [Xylella fastidiosa M12]
gi|71163833|gb|EAO13549.1| DNA polymerase III, beta chain [Xylella fastidiosa Dixon]
gi|71730069|gb|EAO32160.1| DNA polymerase III, beta chain [Xylella fastidiosa Ann-1]
gi|167964046|gb|ACA11056.1| DNA-directed DNA polymerase [Xylella fastidiosa M12]
Length = 366
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 175/293 (59%), Gaps = 10/293 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ L PL V+++VE++ IL+N+L+ N +++S TD EV++ + T + S
Sbjct: 6 QRETFLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I + ARK +I+R+LP+ ++++Y + + +++G+SKFTL TL A ++P S
Sbjct: 66 -EITIPARKIYEIVRALPDASQLSVYQSDDKITLQAGRSKFTLATLPANDFP-----SID 119
Query: 128 DFEFT----LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
E T +++ LK ++ F++AQQD+RYYLNGLL + + V++DGHRL
Sbjct: 120 KIEVTERIIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLRDTKLRCVATDGHRLALC 179
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDG 243
+ +++ II+PRK V LQRLLE + +EL+I+ N I++ ++ SKLIDG
Sbjct: 180 ETELEQAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDG 239
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
F DY+ VI ++ V R L +LQR +I+SN+K +GVR+ + P LKI
Sbjct: 240 SFPDYEGVIPIGADREVKVAREVLRDALQRAAILSNEKYRGVRIEVSPGQLKI 292
>gi|269965277|ref|ZP_06179398.1| DNA polymerase III, beta chain [Vibrio alginolyticus 40B]
gi|269830078|gb|EEZ84306.1| DNA polymerase III, beta chain [Vibrio alginolyticus 40B]
Length = 366
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ +S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEENVLSMTATDLEVELVSKVTLEGDFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V +RKF+DI R LP+ +T +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPSRKFLDICRGLPDDAIITFVLEGDRVQVRSGRSRFSLATLPANDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +LSQ L+ +++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVSQTQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +L++ E PV L+I ++ ++ +N SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFTFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ + + ++L ++ R +I+SN+K +GVR+ + ++IT ++ +E+A
Sbjct: 244 YRRVLPQSTNKTLIASCDELRQAFSRAAILSNEKFRGVRVNLADTEMRITANNPEQEEA 302
>gi|262392782|ref|YP_003284636.1| DNA polymerase III subunit beta [Vibrio sp. Ex25]
gi|451972219|ref|ZP_21925430.1| DNA polymerase III subunit beta [Vibrio alginolyticus E0666]
gi|262336376|gb|ACY50171.1| DNA polymerase III beta subunit [Vibrio sp. Ex25]
gi|451931884|gb|EMD79567.1| DNA polymerase III subunit beta [Vibrio alginolyticus E0666]
Length = 366
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ +S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEENVLSMTATDLEVELVSKVTLEGDFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V +RKF+DI R LP+ +T +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPSRKFLDICRGLPDDAIITFVLEGDRVQVRSGRSRFSLATLPANDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +LSQ L+ +++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVSQTQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +L++ E PV L+I ++ ++ +N SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFTFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ + + ++L ++ R +I+SN+K +GVR+ + ++IT ++ +E+A
Sbjct: 244 YRRVLPQSTNKTLIASCDELRQAFSRAAILSNEKFRGVRVNLADTEMRITANNPEQEEA 302
>gi|298160867|gb|EFI01883.1| DNA polymerase III beta subunit [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 367
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 164/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SL + + +++ + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLSNDALIDVKLDDSKLIVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
F L Q L+ ++ F++AQQD+RYYLNG+LL + AV++DGHRL ++
Sbjct: 125 SLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILRAVATDGHRLAMCSMSA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D + + +I+PRK + + RLL ++ V + + + I+ SKL+DGKF D
Sbjct: 185 DIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKI 293
>gi|343515746|ref|ZP_08752796.1| DNA polymerase III subunit beta [Vibrio sp. N418]
gi|342797702|gb|EGU33343.1| DNA polymerase III subunit beta [Vibrio sp. N418]
Length = 366
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L PLQ V + + LPIL N+L+ +S +TD EV++ + + +
Sbjct: 6 ERSHLLKPLQQVSGALGGRPTLPILGNLLLKVEENTLSMTATDLEVELISRVTLEGDFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V +RKF+DI R LP+ +T +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPSRKFLDICRGLPDDSVITFILEGDRVQVRSGRSRFSLATLPANDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ V++
Sbjct: 125 EVEISLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVSLVSL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F++ II+PRK V L +LL+ E PV L+I ++ ++ +N SKL+DG+F D
Sbjct: 185 GADFAT-KQIIVPRKGVQELVKLLDAPEQPVVLQIGSSNVRAEVNNFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ ++L ++ R +I+SN+K +GVR+ + N ++IT ++ +E+A
Sbjct: 244 YRRVMPQTTTKTLEAGCDELRQAFSRAAILSNEKFRGVRVNLADNEMRITANNPEQEEA 302
>gi|330447268|ref|ZP_08310918.1| DNA polymerase III, beta subunit [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491459|dbj|GAA05415.1| DNA polymerase III, beta subunit [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 366
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 173/299 (57%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + + LPIL NIL+ +S TD EV++ A+ S
Sbjct: 6 EREHLLKPLQQVAAALGGRPSLPILGNILLKVEDGCLSMTGTDLEVELIAKVALDGEFES 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ V +RKF+DI R LP + +++ E + I+SG+S++TL TL A ++P + + +
Sbjct: 66 GAVTVPSRKFLDICRGLPSSASISVSYEGDRVLIRSGRSRYTLTTLPAADFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q ++ +++ FS+A QD+RYYLNG+L +++ +V++DGHR+ +N
Sbjct: 125 EVEFTLEQGRMRQLIDSTQFSMANQDVRYYLNGMLFETDGQHLRSVATDGHRMAVCAINT 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + II+PRK V L RL +N E V ++I N+ I+ +N SKL+DG+F D
Sbjct: 185 GHELPT-KQIIVPRKGVLELVRLFDNPEAEVNIQIGNSNIRATVNNFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K ++ + R +I+SN+K +GVR+ + ++IT ++ +E+A
Sbjct: 244 YRRVMPQNSTKFVEAGCEEMRNAFARAAILSNEKFRGVRVNLSNGEIRITANNPEQEEA 302
>gi|319778797|ref|YP_004129710.1| DNA polymerase III subunit beta [Taylorella equigenitalis MCE9]
gi|397661015|ref|YP_006501715.1| DNA polymerase III subunit beta [Taylorella equigenitalis ATCC
35865]
gi|317108821|gb|ADU91567.1| DNA polymerase III beta subunit [Taylorella equigenitalis MCE9]
gi|394349194|gb|AFN35108.1| DNA polymerase III beta subunit [Taylorella equigenitalis ATCC
35865]
gi|399115372|emb|CCG18172.1| DNA polymerase III beta subunit [Taylorella equigenitalis 14/56]
Length = 380
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 181/308 (58%), Gaps = 13/308 (4%)
Query: 11 AILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS--- 67
AI PL V+ IVEKK LPILS++L+ K + + +++D +QITT G +SS
Sbjct: 10 AIRKPLDTVVGIVEKKASLPILSHVLIKKGPQSLDLVTSDLSIQITTKLRFGEDDSSSAP 69
Query: 68 ------INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIM 121
I + V A K +I+R +P + + + + + S+FTLQTL +YP
Sbjct: 70 VDDAEIIKVAVPALKLQNIIRVMPTGAMIEANLNESKITLSADDSRFTLQTLPGADYPDA 129
Query: 122 TLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLT 181
++++ F++ + LK ILN+V ++AQ DIRYYLNG+LL + + V++DGHRL+
Sbjct: 130 NFDTEWKVRFSIDVQALKKILNLVSCAMAQSDIRYYLNGMLLVIEPGMLHGVATDGHRLS 189
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
+ I+ + + +IIPRKTV L RLL+ N V++ +S I+ F +IE++SK +
Sbjct: 190 HAAETIE-GVTDQTKVIIPRKTVEQLLRLLDESHNEVQVSVSGRSIQFKFGDIEVLSKQV 248
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISN-DKLKGVRLVIKPNYLKITVSS 300
+GKF D++ VI Y ++NR++ +LQR +I+ N DKL ++L N ++T+SS
Sbjct: 249 EGKFPDFEKVIPKGYNTEIIINRSEFSDNLQRANILVNEDKLHSIKLHFANN--RLTISS 306
Query: 301 SNREKASS 308
SN ++ S
Sbjct: 307 SNLDQEES 314
>gi|409422349|ref|ZP_11259450.1| DNA polymerase III subunit beta [Pseudomonas sp. HYS]
Length = 367
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 161/289 (55%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDALIDIKLDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
L Q L+ ++ F++AQQD+RYYLNG+LL + AV++DGHRL +
Sbjct: 125 SLTCNLEQSRLRRLIERTSFAMAQQDVRYYLNGMLLEVSTDTLRAVATDGHRLAMCSMRA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D + +I+PRK + L RLL + V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQADRHQVIVPRKGILELARLLTEPDGMVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVVGDRQALREAFSRTAILSNEKYRGIRLQLANAQLKI 293
>gi|91228347|ref|ZP_01262275.1| DNA polymerase III subunit beta [Vibrio alginolyticus 12G01]
gi|91188107|gb|EAS74411.1| DNA polymerase III subunit beta [Vibrio alginolyticus 12G01]
Length = 366
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ +S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEENVLSMTATDLEVELVSKVMLEGDFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V +RKF+DI R LP+ +T +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPSRKFLDICRGLPDDAIITFVLEGDRVQVRSGRSRFSLATLPANDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +LSQ L+ +++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVSQTQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +L++ E PV L+I ++ ++ +N SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFTFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ + + ++L ++ R +I+SN+K +GVR+ + ++IT ++ +E+A
Sbjct: 244 YRRVLPQSTNKTLIASCDELRQAFSRAAILSNEKFRGVRVNLADTEMRITANNPEQEEA 302
>gi|359435224|ref|ZP_09225447.1| DNA polymerase III subunit beta [Pseudoalteromonas sp. BSi20652]
gi|357918125|dbj|GAA61696.1| DNA polymerase III subunit beta [Pseudoalteromonas sp. BSi20652]
Length = 367
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 175/300 (58%), Gaps = 7/300 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ+ ++ ++ L PL V +E+K+ LPILSN+L+ + ++S TD E+++ +
Sbjct: 1 MQITISRQQ--FLKPLVQVSGAIERKHTLPILSNVLLVVENGQLSMTGTDLEIELVSGVF 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
VG + + + A+K +DI +SLP+ +T+ ++ + + SGKS+F+L TL A ++P
Sbjct: 59 VGDDIADTKLTLPAKKLLDICKSLPDGSDITLSLQEHQLLLTSGKSRFSLTTLSADDFPN 118
Query: 121 MTLNSKYD--FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGH 178
+ ++D EF L++ L+ +L +FS+A QD+RYYLNG+ +I V++DGH
Sbjct: 119 L---EQWDGEVEFQLTRLELRKLLESTHFSMANQDVRYYLNGMSFEVDNTDIKTVATDGH 175
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL Q + + ++ +IIPRK V + RL+ + V ++ N I+II S
Sbjct: 176 RLAIAQKQLTQSLNTQRQLIIPRKGVQEIMRLMVADDELVTIQFGANHIRIIDLEFIFTS 235
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KL+DG+F DY+ V+ +K NR L + QR+SI+SN+K +GVRL + LKIT
Sbjct: 236 KLVDGRFPDYRRVLPRGGDKVITANREWLRSAFQRVSILSNEKFRGVRLNLSNGLLKITA 295
>gi|28896786|ref|NP_796391.1| DNA polymerase III subunit beta [Vibrio parahaemolyticus RIMD
2210633]
gi|260363485|ref|ZP_05776318.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus K5030]
gi|260876544|ref|ZP_05888899.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus AN-5034]
gi|260901415|ref|ZP_05909810.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus AQ4037]
gi|417321639|ref|ZP_12108175.1| DNA polymerase III subunit beta [Vibrio parahaemolyticus 10329]
gi|433656333|ref|YP_007273712.1| DNA polymerase III beta subunit [Vibrio parahaemolyticus BB22OP]
gi|28804994|dbj|BAC58275.1| DNA polymerase III, beta chain [Vibrio parahaemolyticus RIMD
2210633]
gi|308090394|gb|EFO40089.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus AN-5034]
gi|308107195|gb|EFO44735.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus AQ4037]
gi|308113560|gb|EFO51100.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus K5030]
gi|328471239|gb|EGF42141.1| DNA polymerase III subunit beta [Vibrio parahaemolyticus 10329]
gi|432507021|gb|AGB08538.1| DNA polymerase III beta subunit [Vibrio parahaemolyticus BB22OP]
Length = 366
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 180/299 (60%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ +S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGALGGRPTLPILGNLLIKVEENVLSMTATDLEVELVSKVTLEGDFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V +RKF+DI R LP+ +T +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPSRKFLDICRGLPDDAIITFVLEGDRVQVRSGRSRFSLATLPANDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +LSQ L+ +++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVSQTQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +L++ E PV L+I ++ ++ +N SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ + + ++L ++ R +I+SN+K +GVR+ + + ++IT ++ +E+A
Sbjct: 244 YRRVLPQHTNKTLIASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITANNPEQEEA 302
>gi|410634854|ref|ZP_11345481.1| DNA polymerase III subunit beta [Glaciecola lipolytica E3]
gi|410145598|dbj|GAC12686.1| DNA polymerase III subunit beta [Glaciecola lipolytica E3]
Length = 368
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 173/294 (58%), Gaps = 1/294 (0%)
Query: 13 LHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIV 72
L PLQ+V VE+++ LPILSN+L+ + + TD EV++ + + I V
Sbjct: 11 LQPLQLVSGAVERRHTLPILSNVLIKVSESSLWLTGTDLEVELISNVTLTGEFEEGEITV 70
Query: 73 AARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFT 132
A+K DI R L + ++ ++ I+SG+S+++L TL A +YP + + + + EF
Sbjct: 71 PAKKLFDICRGLGDESEIKFEVDGNKALIRSGRSRYSLSTLSASDYPNLE-DWEGETEFE 129
Query: 133 LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFS 192
+SQ LK ++ FS+AQQD+RYYLNG+ L ++ I V++DGHRL ++
Sbjct: 130 ISQADLKHLIESTQFSMAQQDVRYYLNGMSLETEENIIRTVATDGHRLALCRLKYTASAL 189
Query: 193 SCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVI 252
+IIPRK V + RL+E +N V++++ +N I+I ++ SKL+DG+F DY+ V+
Sbjct: 190 PSRQVIIPRKGVLEISRLIEANDNLVKIQLGSNHIRIFSTDFIFTSKLVDGRFPDYRRVL 249
Query: 253 SNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+K +++ L + R SI+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 250 PKDGDKVIEASKDLLKHAFSRASILSNEKFRGVRLNLSQNELKITANNPEQEEA 303
>gi|392552752|ref|ZP_10299889.1| DNA polymerase III subunit beta [Pseudoalteromonas spongiae
UST010723-006]
Length = 367
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 105/311 (33%), Positives = 180/311 (57%), Gaps = 7/311 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M++ ++ E+ L PL V +E+K+ LPILSN+L+ + F TD E+++
Sbjct: 1 MKITISREQ--FLQPLMQVSGAIERKHTLPILSNVLLEVKEGVLYFTGTDLEIELVASVV 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+K +DI +SLP+ +T+ I++ + + SGKS+F+L TL A+++P
Sbjct: 59 LAEPVADCKLTLPAKKLLDICKSLPDGSDITLTIQDAQVLLTSGKSRFSLATLAAEDFPN 118
Query: 121 MTLNSKYDFEFTL--SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGH 178
+ +D E TL ++ L+ +L FS+A QD+RYYLNG+ L + + V++DGH
Sbjct: 119 L---ENWDSEVTLNLTRLELRKLLESTSFSMANQDVRYYLNGMSLEIENDVVKTVATDGH 175
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL Q ++ ++ +IIPRK V + RLL + VE+++ N ++II S
Sbjct: 176 RLALAQKPLEASLNTQRQVIIPRKGVQEIMRLLIADDEVVEIQLGANHVRIIDQAFIFTS 235
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KL+DG+F DY+ V+ +K + NR L + R+SI+SN+K +GVRL + L I+
Sbjct: 236 KLVDGRFPDYRRVLPRGGDKQIVANREWLRSAFARVSILSNEKFRGVRLNLTSGELTISA 295
Query: 299 SSSNREKASST 309
++ +E+A T
Sbjct: 296 NNPEQEQAEET 306
>gi|343507243|ref|ZP_08744685.1| DNA polymerase III subunit beta [Vibrio ichthyoenteri ATCC 700023]
gi|343511674|ref|ZP_08748829.1| DNA polymerase III subunit beta [Vibrio scophthalmi LMG 19158]
gi|342797409|gb|EGU33059.1| DNA polymerase III subunit beta [Vibrio scophthalmi LMG 19158]
gi|342800263|gb|EGU35803.1| DNA polymerase III subunit beta [Vibrio ichthyoenteri ATCC 700023]
Length = 366
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L PLQ V + + LPIL N+L+ +S +TD EV++ + + +
Sbjct: 6 ERSHLLKPLQQVSGALGGRPTLPILGNLLLKVEENTLSMTATDLEVELISRVTLEGDFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V +RKF+DI R LP+ +T +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPSRKFLDICRGLPDDSVITFILEGDRVQVRSGRSRFSLATLPANDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ V++
Sbjct: 125 EVEVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVSLVSL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F++ II+PRK V L +LL+ E PV L+I ++ ++ +N SKL+DG+F D
Sbjct: 185 GADFAT-KQIIVPRKGVQELVKLLDAPEQPVVLQIGSSNVRAEVNNFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ ++L ++ R +I+SN+K +GVR+ + N ++IT ++ +E+A
Sbjct: 244 YRRVMPQTTTKTLEAGCDELRQAFSRAAILSNEKFRGVRVNLADNEMRITANNPEQEEA 302
>gi|322513484|ref|ZP_08066594.1| DNA-directed DNA polymerase III beta subunit [Actinobacillus ureae
ATCC 25976]
gi|322120703|gb|EFX92587.1| DNA-directed DNA polymerase III beta subunit [Actinobacillus ureae
ATCC 25976]
Length = 367
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/319 (33%), Positives = 183/319 (57%), Gaps = 12/319 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYT- 59
MQ + E+ +L PLQ V ++ + LP+++NIL+ +++S TD EV++TT
Sbjct: 1 MQFTITREQ--LLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTGTDLEVELTTVAT 58
Query: 60 ---AVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAK 116
AV + + A+KF+DI RSLPE +++ E +++ +SKF L TL A
Sbjct: 59 LEQAVDFAG---KFTIPAKKFLDICRSLPEDSSISVQFEEYRALVRAARSKFNLATLPAS 115
Query: 117 EYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSD 176
+YP + ++ K + +F++ Q TL +++ FS+A QD RY+LNG+ + + V++D
Sbjct: 116 DYPNL-MDWKPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLRTVATD 174
Query: 177 GHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEI 236
GHRL + ++++ + S +I+PRK V L RL+ + V L+I + +++ + +
Sbjct: 175 GHRLAVCTMALNQELLTHS-VIVPRKAVLELSRLVAVSDETVRLEIGTSNLRVSMNGVVF 233
Query: 237 ISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
SKLIDG+F DY+ V+ ++ L R+L R +I+SN+K +GVRL + N LKI
Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKI 293
Query: 297 TVSSSNREKASS-TDLIYH 314
T ++ +E+A D+ Y
Sbjct: 294 TANNPEQEEAEEIIDVAYQ 312
>gi|254507273|ref|ZP_05119409.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus 16]
gi|219549733|gb|EED26722.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus 16]
Length = 366
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L PLQ V + + LPIL N+L+ +S +TD EV++ + + +
Sbjct: 6 ERSHLLKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELISRVTLEGDFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V +RKF+DI R LP+ +T +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPSRKFLDICRGLPDDSVITFVLEGDRVQVRSGRSRFSLATLPANDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +L+Q L+ ++ FS+A QD+RYYLNG+L + + +V++DGHR+ Q +
Sbjct: 125 EVEISLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIEGSTLRSVATDGHRMAVSQTAL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +L++ E PV L+I ++ ++ +N SKL+DG+F D
Sbjct: 185 GADFAQ-QQIIVPRKGVLELVKLMDAPEQPVTLQIGSSNVRAEVNNFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ ++L + R +I+SN+K +GVR+ + ++IT ++ +E+A
Sbjct: 244 YRRVMPQNTTKTLEAGCDELRSAFSRAAILSNEKFRGVRVNLADTEMRITANNPEQEEA 302
>gi|167854884|ref|ZP_02477660.1| DNA polymerase III subunit beta [Haemophilus parasuis 29755]
gi|167853951|gb|EDS25189.1| DNA polymerase III subunit beta [Haemophilus parasuis 29755]
Length = 367
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/310 (34%), Positives = 184/310 (59%), Gaps = 11/310 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITT--- 57
MQ + E+ +L PLQ V ++ + LP+++NIL+ ++S TD EV++TT
Sbjct: 1 MQFTITREQ--LLKPLQQVCGVLTSRPTLPVINNILLEIEGSRLSLTGTDLEVELTTQAE 58
Query: 58 -YTAVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAK 116
+ AV + S + A+KF+DI RSLP+ +++ + +FI++ +SKF L TL A
Sbjct: 59 LFEAVSF---SGKFTIPAKKFLDICRSLPDDSVISVQFDEDRVFIRADRSKFNLATLPAS 115
Query: 117 EYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSD 176
+YP + ++ K + +FT+ Q TL ++ FS+A QD RY+LNG+ + + +V++D
Sbjct: 116 DYPSL-MDWKPEVDFTIEQATLARLIEATQFSMANQDARYFLNGMKFETEGNLLRSVATD 174
Query: 177 GHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEI 236
GHRL + ++++ + S +I+PRK V L RL+ + V L+I + +++ + I
Sbjct: 175 GHRLAVCTMALNQELLTHS-VIVPRKAVLELVRLVGHNNESVRLEIGTSNLRVSMNGIVF 233
Query: 237 ISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
SKLIDG+F DY+ V+ ++ + L R+L R +I+SN++ +GVRL + N LKI
Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEADAEVLKRALVRAAILSNERFRGVRLALNQNLLKI 293
Query: 297 TVSSSNREKA 306
T ++ +E+A
Sbjct: 294 TANNPEQEEA 303
>gi|326793324|ref|YP_004311144.1| DNA polymerase III subunit beta [Marinomonas mediterranea MMB-1]
gi|326544088|gb|ADZ89308.1| DNA polymerase III, beta subunit [Marinomonas mediterranea MMB-1]
Length = 365
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/310 (33%), Positives = 179/310 (57%), Gaps = 11/310 (3%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ +L PLQ+V +VE+K +P+L+N+LV + ++ +D EV++ +
Sbjct: 7 RETLLKPLQLVAGVVERKQTMPVLANVLVEVKDQVLTLTGSDLEVELVGQVPLDDCQEG- 65
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
I V ARK +DI +SLP++ + ++ + I+SG+S+F+L TL A E+P + + + D
Sbjct: 66 RITVPARKLVDICKSLPDSAVIEFSLDEQKAIIRSGRSRFSLSTLPADEFPNIQ-DMQGD 124
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY----Q 184
++Q +++ +++ F++A QD+RYYLNG+L + V++DGHRL Q
Sbjct: 125 LTVNVAQSSVRRLIDRTGFAMANQDVRYYLNGMLFEVADGQLRVVATDGHRLATAIEDAQ 184
Query: 185 VNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGK 244
V+ D + +I+PRK V L RLL + + VELKI +N ++ + SKL+DGK
Sbjct: 185 VSGD-----LTQVIVPRKGVLELNRLLSDTDELVELKIGSNHVRATIDDYTFTSKLVDGK 239
Query: 245 FLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNRE 304
F DY VI EK + +R +L + R SI+SN+K +GVRL++ L++ ++ +E
Sbjct: 240 FPDYHRVIPRNNEKMVIADRQELRQVFLRASILSNEKYRGVRLILSNGMLQVFANNPEQE 299
Query: 305 KASSTDLIYH 314
+A + L+ +
Sbjct: 300 EAEESVLVQY 309
>gi|402701190|ref|ZP_10849169.1| DNA polymerase III subunit beta [Pseudomonas fragi A22]
Length = 367
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 161/289 (55%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ + +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVDGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I +++ + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDALIDIKLDDNKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
L Q L+ ++ F++AQQD+RYYLNG+LL I AV++DGHRL +
Sbjct: 125 SLTCNLQQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGIIRAVATDGHRLAMCSMKA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL + V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQPDRHQVIVPRKGILELARLLTEPDGEVSIVLGAHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKIVIGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKI 293
>gi|452877132|ref|ZP_21954448.1| DNA polymerase III subunit beta, partial [Pseudomonas aeruginosa
VRFPA01]
gi|452186080|gb|EME13098.1| DNA polymerase III subunit beta, partial [Pseudomonas aeruginosa
VRFPA01]
Length = 356
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 161/282 (57%), Gaps = 1/282 (0%)
Query: 15 PLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAA 74
PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ + I V A
Sbjct: 2 PLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLEDAAEPGEITVPA 61
Query: 75 RKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLS 134
RK +DI +SLP + I +E + + +K+G+S+FTL TL A ++P + F+++
Sbjct: 62 RKLMDICKSLPSDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE-EGPGSLNFSIA 120
Query: 135 QKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSC 194
Q L+ +++ F++AQQD+RYYLNG+LL + +V++DGHRL ++
Sbjct: 121 QSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGALRSVATDGHRLAMCSLDAQIPSQDR 180
Query: 195 SDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVISN 254
+I+PRK + L RLL ++ V + + + I+ SKL+DGKF DY+ V+
Sbjct: 181 HQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDGKFPDYERVLPR 240
Query: 255 KYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
+K + +R +L + R +I+SN+K +G+RL + LKI
Sbjct: 241 GGDKLVIGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKI 282
>gi|307253757|ref|ZP_07535611.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307258214|ref|ZP_07539957.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306863241|gb|EFM95181.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306867674|gb|EFM99519.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
Length = 367
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/319 (33%), Positives = 182/319 (57%), Gaps = 12/319 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYT- 59
MQ + E+ +L PLQ V ++ + LP+++NIL+ +++S TD EV++TT
Sbjct: 1 MQFTITREQ--LLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTGTDLEVELTTVAT 58
Query: 60 ---AVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAK 116
AV + + A+KF+DI RSLPE +++ E +++ +SKF L TL A
Sbjct: 59 LEQAVDFAG---KFTIPAKKFLDICRSLPEDSSISVQFEEDRALVRAARSKFNLATLPAS 115
Query: 117 EYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSD 176
+YP + ++ K + +F++ Q TL +++ FS+A QD RY+LNG+ + + V++D
Sbjct: 116 DYPNL-MDWKPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLRTVATD 174
Query: 177 GHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEI 236
GHRL + ++++ + S +I+PRK V L RL+ + V L+I + ++ + +
Sbjct: 175 GHRLAVCTMALNQELLTHS-VIVPRKAVLELSRLVAVSDETVRLEIGTSNLRASMNGVVF 233
Query: 237 ISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
SKLIDG+F DY+ V+ ++ L R+L R +I+SN+K +GVRL + N LKI
Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKI 293
Query: 297 TVSSSNREKASS-TDLIYH 314
T ++ +E+A D+ Y
Sbjct: 294 TANNPEQEEAEEIIDVAYQ 312
>gi|126668222|ref|ZP_01739183.1| DNA polymerase III, beta subunit [Marinobacter sp. ELB17]
gi|126627371|gb|EAZ98007.1| DNA polymerase III, beta subunit [Marinobacter sp. ELB17]
Length = 351
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 161/289 (55%), Gaps = 1/289 (0%)
Query: 21 SIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDI 80
+VEKK +P+LSN+L+ ++ T+ EV++ + + I V ARK DI
Sbjct: 3 GVVEKKQTMPVLSNVLLVAEDNTLTLTGTNMEVELVARITPVHIDQPGRITVPARKLADI 62
Query: 81 LRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKC 140
R+L E + + + + ++ GKS FTL TL A+ +P + + F L QK L+
Sbjct: 63 CRALGEESPIELDQQGDRLHLRCGKSHFTLATLPAEHFPNVE-DEAESFRLELPQKELRR 121
Query: 141 ILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIP 200
+ + F++AQQD+RYYLNGLLL ++ V++DGHRL +++ +I+P
Sbjct: 122 MFDSTAFAMAQQDVRYYLNGLLLEVAADHVRTVATDGHRLAMAHQDVETGCPEARQVIVP 181
Query: 201 RKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVISNKYEKSF 260
RK V L RLL++ + PV L I +N ++ + SKLI+GKF DY VI +K
Sbjct: 182 RKGVLELARLLDDVDTPVTLVIGDNHLRATVGSYTFTSKLIEGKFPDYNRVIPRGGDKVV 241
Query: 261 LVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASST 309
L +R L +LQR I+S++ ++GVRL + N L++ ++ ++E+A
Sbjct: 242 LADRITLKNTLQRAGILSHENIRGVRLNLAANELQVFANNPDQEQAEDA 290
>gi|336313992|ref|ZP_08568914.1| DNA polymerase III, beta subunit [Rheinheimera sp. A13L]
gi|335881931|gb|EGM79808.1| DNA polymerase III, beta subunit [Rheinheimera sp. A13L]
Length = 369
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 174/310 (56%), Gaps = 4/310 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILV-CKNSEKISFLSTDTEVQITTYT 59
MQ + E++A+L PLQMV +E+++ LPILSN+L+ + ++ TD E+++ +
Sbjct: 1 MQFTI--ERDALLKPLQMVSGAIERRHTLPILSNVLIEAREDGQLILTGTDLEIELVAMS 58
Query: 60 AVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP 119
+ S I V A+K +DI RSLP+T +++ ++ + + +GKSKFTL TL A +YP
Sbjct: 59 PIQQLISPGRITVPAKKILDICRSLPDTSLLSVTVQGDNCVVSTGKSKFTLSTLSANDYP 118
Query: 120 IMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+ + + + + L + L+ +L+ FS+A QD+RYYLNGLL + +V++DGHR
Sbjct: 119 NLE-SWQGEVDLQLPRNQLRHLLDDTAFSMANQDVRYYLNGLLFEVDNGTLRSVATDGHR 177
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L + + IIIPRK V + RLL + V L + N I++ + K
Sbjct: 178 LAMSSIELAATAGHQKQIIIPRKGVLEVMRLLIADDQLVTLSLGQNHIRLTDTQFSFSCK 237
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG+F DY+ V+ K +R+ L S R SI+SN+K +GVR + L+I +
Sbjct: 238 LIDGRFPDYRRVLPRNSTKLVTAHRDVLKDSCVRASILSNEKYRGVRFTLSSGELQIVAN 297
Query: 300 SSNREKASST 309
+ E+A +
Sbjct: 298 NPEHEQAEES 307
>gi|421337753|ref|ZP_15788197.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-20A2]
gi|395948291|gb|EJH58942.1| DNA polymerase III, beta subunit [Vibrio cholerae HC-20A2]
Length = 357
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 176/295 (59%), Gaps = 2/295 (0%)
Query: 12 ILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINII 71
++ PLQ V + + LPIL N+L+ ++S +TD EV++ + + + +I
Sbjct: 1 MIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLEGEFEAGSIT 60
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF+DI R LP++ +T+ +E + ++SG+S+F+L TL A ++P + + + + +
Sbjct: 61 VPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPASDFPNIE-DWQSEVQV 119
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q + F
Sbjct: 120 SLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVAQAQLGADF 179
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
+ II+PRK V L +LL+ E PV L+I ++ ++ ++ SKL+DG+F DY+ V
Sbjct: 180 AQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTSKLVDGRFPDYRRV 238
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ K+ +L ++ R +I+SN+K +GVR+ + N ++IT ++ +E+A
Sbjct: 239 LPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNGMRITANNPEQEEA 293
>gi|197334198|ref|YP_002154782.1| DNA polymerase III subunit beta [Vibrio fischeri MJ11]
gi|423684748|ref|ZP_17659556.1| DNA polymerase III subunit beta [Vibrio fischeri SR5]
gi|197315688|gb|ACH65135.1| DNA polymerase III, beta subunit [Vibrio fischeri MJ11]
gi|371495795|gb|EHN71389.1| DNA polymerase III subunit beta [Vibrio fischeri SR5]
Length = 366
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L PLQ V + + LPIL NIL+ + ++S +TD EV++ + + +
Sbjct: 6 ERSLLLKPLQQVSGALGGRPSLPILGNILLQVENGQLSMTATDLEVELISKITLEGDFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ V +RKF+DI R LP++ +TI +E + ++SG+S+FTL TL A ++P + +
Sbjct: 66 GAVTVPSRKFLDICRGLPDSANITIVLEGDRVLVRSGRSRFTLATLPANDFPNIE-GWES 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E TLSQ L+ ++ FS+A QD+RYYLNG++ Q +V++DGHR+ + +
Sbjct: 125 EVEITLSQAQLRKLIESTQFSMANQDVRYYLNGMMFETQGNIFRSVATDGHRMAVCNMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + +I+PRK + L RLL++ + V L+ N+ ++ +N SKL+DG+F D
Sbjct: 185 ESELPE-QQVIMPRKGIQELVRLLDSPDQSVTLQFGNSNVRAEVNNFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ + ++L ++ R +I+SN+K +GVR+ + N ++IT ++ +E+A
Sbjct: 244 YRRVMPQSSNKTLEADCDELRQAFARAAILSNEKFRGVRVNLANNQMRITANNPEQEEA 302
>gi|297581953|ref|ZP_06943873.1| DNA polymerase subunit III [Vibrio cholerae RC385]
gi|297533820|gb|EFH72661.1| DNA polymerase subunit III [Vibrio cholerae RC385]
Length = 366
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 178/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ ++S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLEGEFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARKF+DI R LP++ +T+ +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPASDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ + +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVAQAQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK L +LL+ E PV L+I ++ ++ ++ SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGGLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ +L ++ R +I+SN+K +GVR+ + N ++IT ++ +E+A
Sbjct: 244 YRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITANNPEQEEA 302
>gi|421615458|ref|ZP_16056482.1| DNA polymerase III subunit beta [Pseudomonas stutzeri KOS6]
gi|409782531|gb|EKN62086.1| DNA polymerase III subunit beta [Pseudomonas stutzeri KOS6]
Length = 367
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 166/289 (57%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVQDQQLSLTGTDLEVELVGRVTLEDAAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + + ++++ + IKSG+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPSDALINVRLDDQKVVIKSGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
F++ Q L+ ++ F++AQQD+RYYLNG+L+ + AV++DGHRL +
Sbjct: 125 SLSFSVEQGKLRRLIERSSFAMAQQDVRYYLNGMLIEVSSGMLRAVATDGHRLAMCSMQA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ +I+PRK + L RLL +++ V + + + I+ SKL+DGKF D
Sbjct: 185 GIEQPDRHQVIVPRKGILELARLLTDQDAEVSIVLGQHHIRANTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R L + R +I+SN+K +G+RL ++ LKI
Sbjct: 245 YERVLPRGGDKLVVGDRQLLREAFSRTAILSNEKYRGIRLQLENGLLKI 293
>gi|261250638|ref|ZP_05943213.1| DNA polymerase III beta subunit [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|417954323|ref|ZP_12597360.1| DNA polymerase III subunit beta [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|260939207|gb|EEX95194.1| DNA polymerase III beta subunit [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|342815591|gb|EGU50506.1| DNA polymerase III subunit beta [Vibrio orientalis CIP 102891 =
ATCC 33934]
Length = 366
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 177/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L PLQ V + + LPIL N+L+ +S +TD EV++ + + +
Sbjct: 6 ERSHLLKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELISRVTLEGEFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V +RKF+DI R LP+ +T +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPSRKFLDICRGLPDDSVITFVLEGDRVQVRSGRSRFSLSTLPANDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +L+Q L+ ++ FS+A QD+RYYLNG+L + + +V++DGHR+ Q +
Sbjct: 125 EVEVSLTQAELRGLVEKTQFSMANQDVRYYLNGMLFEIEGTTLRSVATDGHRMAVSQTQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +LL+ E PV L+I ++ ++ +N SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGSSNVRAEVNNYVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ ++L ++ R +I+SN+K +GVR+ + ++IT ++ +E+A
Sbjct: 244 YRRVMPQSTSKTLETGCDELRQAFSRAAILSNEKFRGVRVNLADTEMRITANNPEQEEA 302
>gi|383315353|ref|YP_005376195.1| DNA polymerase III subunit beta [Frateuria aurantia DSM 6220]
gi|379042457|gb|AFC84513.1| DNA polymerase III, beta subunit [Frateuria aurantia DSM 6220]
Length = 366
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 177/289 (61%), Gaps = 2/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ V+ +VE++ LP+L+N+LV + ++SF TD EV++ V
Sbjct: 6 QREALLKPLQQVVGVVERRQTLPVLANLLVNVHQGRVSFTGTDLEVEMIATCEVTDAVDG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ + ARK DI+++LP+ + + + + + + +G+S+FTL TL A E+P++ + +
Sbjct: 66 -EVTIPARKLFDIVKALPDGVTIHVKLGGERVNVNAGRSRFTLATLPATEFPVIE-SIEL 123
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ +L + L+ ++ F++A QD+RYYLNG+LL +++ + V++DGHRL ++++
Sbjct: 124 VEKVSLPENVLRDLMERTAFAMANQDVRYYLNGMLLELKQQQLRCVATDGHRLALKEIDL 183
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
++ +IIPRK V L L + E ++++ N I+I + SKLIDG+F D
Sbjct: 184 GDAVANQRQVIIPRKGVNELIGLFGSGEGGIDVEFGRNHIRIKREGVVFTSKLIDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ VI +K ++ R++L +LQR +I+SN+K +GV++ + P ++I
Sbjct: 244 YEAVIPLGADKQAVLFRDELRGALQRAAILSNEKYRGVKIELMPGKMRI 292
>gi|417949533|ref|ZP_12592667.1| DNA polymerase III subunit beta [Vibrio splendidus ATCC 33789]
gi|342808042|gb|EGU43212.1| DNA polymerase III subunit beta [Vibrio splendidus ATCC 33789]
Length = 366
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 99/307 (32%), Positives = 181/307 (58%), Gaps = 3/307 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ +S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGALGGRPTLPILGNLLIKVEDNVLSMTATDLEVELISRVTLEGDFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V +RKF+DI R LP++ +T+ ++ + ++SG+S+F+L TL A ++P + +
Sbjct: 66 GSITVPSRKFLDICRGLPDSSVITVVLDGDRVQVRSGRSRFSLATLPAADFPNIE-DWSS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +++Q L+ ++ FS+A QD+RYYLNG+L + + +V++DGHR+ Q +
Sbjct: 125 EVEVSVTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIEGSTLRSVATDGHRMAVSQAQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +LL+ E PV L+I N+ ++ +N SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVQELVKLLDAPEQPVTLQIGNSNVRAEVNNYVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKAS 307
Y+ V+ K+ ++L + R +I+SN+K +GVR+ + + ++IT ++ +E+A
Sbjct: 244 YRRVMPQNTTKTLEAGCDELRSAFSRAAILSNEKFRGVRVNLADSEMRITANNPEQEEAE 303
Query: 308 ST-DLIY 313
D+ Y
Sbjct: 304 EMLDVTY 310
>gi|15836607|ref|NP_297295.1| DNA polymerase III subunit beta [Xylella fastidiosa 9a5c]
gi|9104762|gb|AAF82815.1|AE003855_2 DNA polymerase III, beta chain [Xylella fastidiosa 9a5c]
Length = 366
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 175/293 (59%), Gaps = 10/293 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ L PL V+++VE++ IL+N+L+ N +++S TD EV++ + T + S
Sbjct: 6 QRETFLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I + ARK +I+R+LP++ ++++Y + + +++G+S+FTL TL A ++P S
Sbjct: 66 -EITIPARKIYEIVRALPDSSQLSVYQSDDKITLQAGRSRFTLATLPANDFP-----SID 119
Query: 128 DFEFT----LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
E T + + LK ++ F++AQQD+RYYLNGLL + + V++DGHRL
Sbjct: 120 KIEVTERIIIPEVLLKELIERTAFAMAQQDVRYYLNGLLFDLRDTKLRCVATDGHRLALC 179
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDG 243
+ +++ II+PRK V LQRLLE + +EL+I+ N I++ ++ SKLIDG
Sbjct: 180 ETELEQAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDG 239
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
F DY+ VI ++ V R L +LQR +I+SN+K +GVR+ + P LKI
Sbjct: 240 SFPDYEGVIPIGADREVKVAREVLRDALQRAAILSNEKYRGVRIEVSPGQLKI 292
>gi|300112747|ref|YP_003759322.1| DNA polymerase III subunit beta [Nitrosococcus watsonii C-113]
gi|299538684|gb|ADJ27001.1| DNA polymerase III, beta subunit [Nitrosococcus watsonii C-113]
Length = 367
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 111/304 (36%), Positives = 178/304 (58%), Gaps = 7/304 (2%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ I+ L + +VE+++ LPILSN+L+ ++S ++TD E++I T +
Sbjct: 7 REEIVRHLVTICGVVERRHTLPILSNVLLSVKDSRLSLMATDLEIEIKTAFDI-LSPEEG 65
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP-IMTLNSKY 127
I ++ARKF++I R+LP + + +I SG+S+FTL TL A+++P I ++++
Sbjct: 66 KITISARKFLEICRALPSQSALEAQYKEGQFYIHSGRSRFTLSTLPAEDFPSIDSIDAVA 125
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E T Q LK +L F +A QD+RYYLNGLLL ++ I AV++DGHRL +
Sbjct: 126 ELELT--QAELKKLLYRTVFCMAHQDVRYYLNGLLLELTEEAIHAVATDGHRLALASLAK 183
Query: 188 DKKFSSCS-DIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFL 246
+ + IIPRK + L RLLE + V LK NQ++ F + +KLIDG+F
Sbjct: 184 GSQQAGTEIQSIIPRKAILELVRLLEESNDSVRLKFGTNQMRAEFQGLSFSTKLIDGQFP 243
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
DYK VI EK F+ +R K ++L R++I++NDK +GV L + + LK+ +N E+
Sbjct: 244 DYKRVIPVGCEKQFVADREKFKQALVRVNILTNDKYRGVHLHL--SALKLQAIVTNLEQG 301
Query: 307 SSTD 310
S+ +
Sbjct: 302 SAEE 305
>gi|88813025|ref|ZP_01128267.1| DNA polymerase III subunit beta [Nitrococcus mobilis Nb-231]
gi|88789658|gb|EAR20783.1| DNA polymerase III subunit beta [Nitrococcus mobilis Nb-231]
Length = 366
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 170/292 (58%), Gaps = 4/292 (1%)
Query: 6 NTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN 65
+ E+ A+L LQ +I +VE++ LPIL+NIL+ ++++ +TD EV+I +
Sbjct: 4 DVERTALLKALQSIIGVVERRQTLPILANILLDAREQRLAITATDLEVEIQAHAQAELSQ 63
Query: 66 SSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP-IMTLN 124
+ + ARK +DI+R+LPE + + + + ++ S+FTL TL K++P + +
Sbjct: 64 AG-ETTLPARKLMDIVRNLPEHADIHVSTSHDRIALQLPHSRFTLATLPTKDFPTVEEIG 122
Query: 125 SKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQ 184
D E T Q L+ +++ F++A QD+RYYLNGLLL + + AV++DGHRL +
Sbjct: 123 QTQDLELT--QSHLRWLIDRTGFAMALQDVRYYLNGLLLELEPYCLRAVATDGHRLALAE 180
Query: 185 VNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGK 244
V + + +I+PRK + L RLL + + P+ L++ +N I++ + + +KL+DG+
Sbjct: 181 VVTELPLTETKQVIVPRKGIQELLRLLTDSDEPLRLELGDNHIRVTWPEVRFTTKLLDGQ 240
Query: 245 FLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
F Y+ VI + V R+ L ++L R +I+SN+ L GVR ++ L+I
Sbjct: 241 FPSYQRVIPKQNGGCLQVERHTLRQALIRAAILSNEHLHGVRFILGGTSLRI 292
>gi|28197947|ref|NP_778261.1| DNA polymerase III subunit beta [Xylella fastidiosa Temecula1]
gi|182680574|ref|YP_001828734.1| DNA polymerase III subunit beta [Xylella fastidiosa M23]
gi|386084081|ref|YP_006000363.1| DNA polymerase III subunit beta [Xylella fastidiosa subsp.
fastidiosa GB514]
gi|417557587|ref|ZP_12208612.1| DNA polymerase sliding clamp subunit [Xylella fastidiosa EB92.1]
gi|28056007|gb|AAO27910.1| DNA polymerase III beta chain [Xylella fastidiosa Temecula1]
gi|182630684|gb|ACB91460.1| DNA polymerase III, beta subunit [Xylella fastidiosa M23]
gi|307579028|gb|ADN62997.1| DNA polymerase III subunit beta [Xylella fastidiosa subsp.
fastidiosa GB514]
gi|338179799|gb|EGO82720.1| DNA polymerase sliding clamp subunit [Xylella fastidiosa EB92.1]
Length = 366
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 175/293 (59%), Gaps = 10/293 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ L PL V+++VE++ IL+N+L+ N +++S TD EV++ + T + S
Sbjct: 6 QRETFLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTKIEDPESG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I + ARK +I+R+LP+ ++++Y + + +++G+S+FTL TL A ++P S
Sbjct: 66 -EITIPARKIYEIVRALPDASQLSVYQSDDKITLQAGRSRFTLATLPANDFP-----SID 119
Query: 128 DFEFT----LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
E T +++ LK ++ F++AQQD+RYYLNGLL + + V++DGHRL
Sbjct: 120 KIEVTERIIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLRDTKLRCVATDGHRLALC 179
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDG 243
+ +++ II+PRK V LQRLLE + +EL+I+ N I++ ++ SKLIDG
Sbjct: 180 ETELEQAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDG 239
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
F DY+ VI ++ V R L +LQR +I+SN+K +GVR+ + P LKI
Sbjct: 240 SFPDYEGVIPIGADREVKVAREVLRDALQRAAILSNEKYRGVRIEVSPGQLKI 292
>gi|333981749|ref|YP_004510959.1| DNA polymerase III subunit beta [Methylomonas methanica MC09]
gi|333805790|gb|AEF98459.1| DNA polymerase III, beta subunit [Methylomonas methanica MC09]
Length = 367
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 179/306 (58%), Gaps = 3/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ ++N ++ +L PLQ ++S++EK+ + +LSN+L+ +++ +DTE+QI +
Sbjct: 1 MKFIIN--RDQLLAPLQQIVSVIEKRQTMAVLSNVLLHVEENQLTMTGSDTEIQIVSKLN 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + I V ARKF+DI R LP + ++ + + + SG+S+F+L TL A+ YP
Sbjct: 59 LEMASEFGEITVPARKFLDICRLLPTSAEIKFELHEDKVKLVSGRSRFSLTTLPAEHYPE 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
S+ D +F L+ K L+ F +A QD+RYYLNGLLL + V+SDGHRL
Sbjct: 119 FN-ESELDHQFLLNAGKFKKGLDKTLFCMANQDVRYYLNGLLLHISNSRLKLVASDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ ++ +I + + II+PRK V L RLL++ + + ++ SNN IKI + ++ SKL
Sbjct: 178 SIFEDDIGQPTGHEARIILPRKAVQELSRLLDDTDAELNIQFSNNHIKIYYKDVVFSSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
ID KF D+ V + + + + L +L R++I+SN+K KGV I + LK++ +
Sbjct: 238 IDAKFPDFSKVFNQSFMTPLQIQKQLLRDALTRVAILSNEKYKGVTFDIGGDLLKLSTHN 297
Query: 301 SNREKA 306
++A
Sbjct: 298 PEHDEA 303
>gi|323496928|ref|ZP_08101956.1| DNA polymerase III subunit beta [Vibrio sinaloensis DSM 21326]
gi|323318002|gb|EGA70985.1| DNA polymerase III subunit beta [Vibrio sinaloensis DSM 21326]
Length = 366
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 175/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L PLQ V + + LPIL N+L+ +S +TD EV++ + + +
Sbjct: 6 ERSHLLKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELISRVTLEGEFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
++ V +RKF+DI R LP+ +T +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSVTVPSRKFLDICRGLPDDSVITFVLEGDRVQVRSGRSRFSLSTLPASDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +LSQ L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVEISLSQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVSQTQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +L++ E PV L+I ++ ++ +N SKL+DG+F D
Sbjct: 185 GADFAQ-QQIIVPRKGVLELVKLMDAPEQPVTLQIGSSNLRAEVNNFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ ++L + R +I+SN+K +GVR+ + ++IT ++ +E+A
Sbjct: 244 YRRVMPQNTTKTLETGCDELRSAFSRAAILSNEKFRGVRVNLADTEMRITANNPEQEEA 302
>gi|209693644|ref|YP_002261572.1| DNA polymerase III subunit beta [Aliivibrio salmonicida LFI1238]
gi|208007595|emb|CAQ77695.1| DNA polymerase III subunit beta-subunit [Aliivibrio salmonicida
LFI1238]
Length = 369
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 178/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L PLQ V + + LPI NIL+ + ++S +TD EV++ + + +
Sbjct: 6 ERSHLLKPLQQVSGALGGRPSLPIFGNILLQVENGQLSMTATDLEVELISNILLEGDFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V +RKF+DI R LP+ +TI +E + ++SG+S+FTL TL A+++P + +
Sbjct: 66 GAITVPSRKFLDICRGLPDGANITIVLEGDRVLVRSGRSRFTLATLPAQDFPNIE-GWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E TLSQ L+ ++ FS+A QD+RYYLNG++ Q +V++DGHR+ + +
Sbjct: 125 EVEITLSQAQLRKLIESTQFSMANQDVRYYLNGMMFETQGTIFRSVATDGHRMAVCNMPV 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + +I+PRK + L RLL++ E V L+ N+ ++ +N SKL+DG+F D
Sbjct: 185 ESELPE-QQVIMPRKGIQELVRLLDSPEQSVTLQFGNSNVRAEVNNFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ + ++L ++ R +I+SN+K +GVR+ + N ++IT ++ +E+A
Sbjct: 244 YRRVMPQSSNKTLEADCDELRQAFARAAILSNEKFRGVRVNLANNQMRITANNPEQEEA 302
>gi|323493782|ref|ZP_08098900.1| DNA polymerase III subunit beta [Vibrio brasiliensis LMG 20546]
gi|323311916|gb|EGA65062.1| DNA polymerase III subunit beta [Vibrio brasiliensis LMG 20546]
Length = 366
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 177/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L PLQ V + + LPIL N+L+ +S +TD EV++ + + +
Sbjct: 6 ERSHLLKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELISRVTLEGEFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V +RKF+DI R LP+ +T ++ + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPSRKFLDICRGLPDDSVITFVLDGDRVQVRSGRSRFSLSTLPANDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ QV +
Sbjct: 125 EVEVSLTQAELRGLVEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVSQVQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +LL+ E PV L+I ++ ++ +N SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGSSNVRAEVNNYVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ ++L ++ R +I+SN+K +GVR+ + ++IT ++ +E+A
Sbjct: 244 YRRVMPQSTTKTLEAGCDELRQAFSRAAILSNEKFRGVRVNLADTEMRITANNPEQEEA 302
>gi|68249577|ref|YP_248689.1| DNA polymerase III subunit beta [Haemophilus influenzae 86-028NP]
gi|68057776|gb|AAX88029.1| DNA polymerase III, beta chain [Haemophilus influenzae 86-028NP]
Length = 366
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 182/306 (59%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ +++ TD EV++++ T
Sbjct: 1 MQFSISREN--LLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+KF+DI R+L + ++T+ E ++SG+S+FTL T A+EYP
Sbjct: 59 LSSSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRALVQSGRSRFTLTTQPAEEYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+T + + + +F L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHRL
Sbjct: 119 LT-DWQSEVDFQLPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
++++++ + S +I+PRK V L RLLE + P L+I N +++ N SKL
Sbjct: 178 AVCTISLEQELQNHS-VILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ K+ N L ++ R SI+SN++ + VRL +K N LKIT S+
Sbjct: 237 IDGRFPDYRRVLPRNATKTVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITASN 296
Query: 301 SNREKA 306
+ E+A
Sbjct: 297 TEHEEA 302
>gi|440732036|ref|ZP_20912006.1| DNA polymerase III subunit beta [Xanthomonas translucens DAR61454]
gi|440370373|gb|ELQ07292.1| DNA polymerase III subunit beta [Xanthomonas translucens DAR61454]
Length = 366
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 103/295 (34%), Positives = 173/295 (58%), Gaps = 10/295 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A L PL V+++VE++ LP+L+N LV + ++S TD EV++ + V
Sbjct: 6 QREAFLKPLAQVVNVVERRQTLPVLANFLVQVHDGQLSLTGTDLEVEMVSRIVVDDAQDG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ ARK +I+R+LP+ K+T+ + +++G+S+FTL TL A ++P S
Sbjct: 66 -ETTIPARKLFEIIRALPDGSKITVTQNGDKITVQAGRSRFTLATLPANDFP-----SVD 119
Query: 128 DFEFT----LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
+ E T + + LK ++ F++AQQD+RYYLNGLL + + V++DGHRL
Sbjct: 120 EVEATERVLVPEAALKELIERTAFAMAQQDVRYYLNGLLFDLHDQTLRCVATDGHRLALC 179
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDG 243
+ ++ + II+PRK V LQRLLE + VEL++ + +++ ++ SKLIDG
Sbjct: 180 ETALENASGAKRQIIVPRKGVTELQRLLEGGDREVELEVGRSHVRVKRDDVTFTSKLIDG 239
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
+F DY+ VI ++ ++R L +LQR +I+SN+K +GVR+ + P LKI+
Sbjct: 240 RFPDYEAVIPIGADREVKLDREALRAALQRAAILSNEKYRGVRVEVSPGQLKISA 294
>gi|269962692|ref|ZP_06177037.1| DNA polymerase III, beta chain [Vibrio harveyi 1DA3]
gi|269832615|gb|EEZ86729.1| DNA polymerase III, beta chain [Vibrio harveyi 1DA3]
Length = 366
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ +S +TD EV++ + A+ +
Sbjct: 6 ERSHLIKPLQQVSGALGGRPTLPILGNLLIKVEENVLSMTATDLEVELVSKVALEGDFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V +RKF+DI R LP+ +T +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPSRKFLDICRGLPDDSIITFVLEGDRVQVRSGRSRFSLATLPANDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVEVSLTQSDLRTLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVSQTQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +L++ E PV L+I ++ ++ +N SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ + ++L ++ R +I+SN+K +GVR+ + + ++IT ++ +E+A
Sbjct: 244 YRRVMPQSTTKTLEASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITANNPEQEEA 302
>gi|152994045|ref|YP_001338880.1| DNA polymerase III subunit beta [Marinomonas sp. MWYL1]
gi|150834969|gb|ABR68945.1| DNA polymerase III, beta subunit [Marinomonas sp. MWYL1]
Length = 365
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 102/306 (33%), Positives = 179/306 (58%), Gaps = 3/306 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ +L PLQ+V +VE+K +P+L+N+LV + ++ +D EV++ + +
Sbjct: 7 RETLLKPLQLVAGVVERKQTMPVLANVLVEVKDQLLTLTGSDLEVELVGHVPLDECEEG- 65
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
I V ARK +DI +SLP++ + ++++ I+SG+S+F+L TL A E+P + + + D
Sbjct: 66 RITVPARKLMDICKSLPDSAVIEFTLDDQKAVIRSGRSRFSLSTLPADEFPNIQ-DMQGD 124
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
+++Q +++ +++ F++A QD+RYYLNG+LL + V++DGHRL V
Sbjct: 125 LTVSIAQNSVRRLIDRTGFAMANQDVRYYLNGMLLEVADGQLRVVATDGHRLATA-VEDA 183
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ + +I+PRK V L RLL + + VEL I N I+ + SKL+DGKF DY
Sbjct: 184 QVSGDLTQVIVPRKGVLELNRLLNDTDEVVELTIGTNHIRAKVAEYVFTSKLVDGKFPDY 243
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASS 308
VI EK + +R +L + R SI+SN+K +GVRL++ L++ ++ +E+A
Sbjct: 244 HRVIPRNNEKIVIADRLELRQVFLRASILSNEKYRGVRLILSNGMLQVFANNPEQEEAEE 303
Query: 309 TDLIYH 314
+ L+ +
Sbjct: 304 SVLVQY 309
>gi|332288918|ref|YP_004419770.1| DNA polymerase III subunit beta [Gallibacterium anatis UMN179]
gi|330431814|gb|AEC16873.1| DNA polymerase III subunit beta [Gallibacterium anatis UMN179]
Length = 366
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 182/315 (57%), Gaps = 5/315 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ +V E +L PLQ V ++ + LP+L+NILV + ++++ +D EV+++T+
Sbjct: 1 MQFIVAREN--LLKPLQQVCGVLNNRPSLPVLNNILVQIDGDRLTLTGSDLEVELSTFVQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + ARKF+DI RSL E ++T+ EN + + + +SKF L TL A+ YP
Sbjct: 59 LESSSENGTFTIPARKFLDICRSLNEDAQITVNYENDRVLVTAERSKFNLATLPAESYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+T D E + Q L+ ++ FS+A QD RY+LNG+ + + V++DGHRL
Sbjct: 119 LT-QLDVDVELNIEQSVLRRVMEATQFSMANQDARYFLNGMKFETENNVLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ + + + II+PRK V L RLL++ +++ + I++ +N+ SKL
Sbjct: 178 AVCGIQLQQNVPDYA-IIVPRKGVIELMRLLDSNSENAYIRMGQSNIQVHLNNVIFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ ++ V+ N L ++ R +I+SN++ +GVRL+I+ N LKI +
Sbjct: 237 IDGRFPDYRRVLPKNADRILEVDWNSLKQACIRAAILSNERFRGVRLIIEANQLKILAQN 296
Query: 301 SNREKASST-DLIYH 314
++E+A D+ Y
Sbjct: 297 PDQEEAEEVIDVSYQ 311
>gi|406984217|gb|EKE05309.1| hypothetical protein ACD_19C00361G0002 [uncultured bacterium]
Length = 370
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 178/299 (59%), Gaps = 2/299 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG-NSS 67
+ ++L PLQ+ +VE++ +PILS+IL+ + + ++F+ TD EV++ + +
Sbjct: 8 RESLLKPLQLATGVVERRQTMPILSHILLTAHGKLLTFIGTDLEVELHGLVNTDHAVKNP 67
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V +KF+DI R+LPE + + N + + G+S+F + +L K++P + K
Sbjct: 68 AQITVPGKKFLDICRTLPENSTIELTENNGRITVACGRSRFVMTSLSTKDFPCVP-EQKA 126
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
F L QKTL+ ++ F+I QQD+R YLNGLL + +I +++DGHRL + +
Sbjct: 127 VMNFELKQKTLRELIEKTSFAIPQQDVRQYLNGLLFEVKDGSIQTLATDGHRLAVHSIES 186
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
SS + +IIPRK VF L RLLEN + V + +NN ++I SN +ISKLI GKF +
Sbjct: 187 PVVDSSFAQVIIPRKCVFELMRLLENPDEEVSVSFNNNFVRIKGSNFILISKLISGKFPN 246
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y +I + +K ++ N+L ++L R+ I+SN+ + V ++ + L +T ++ ++E+A
Sbjct: 247 YNKIIPKRGDKKVELDCNELKQALTRVGILSNELFRSVNFKLRNDTLVLTTNNPDQEEA 305
>gi|444378462|ref|ZP_21177660.1| DNA polymerase III beta subunit [Enterovibrio sp. AK16]
gi|443677448|gb|ELT84131.1| DNA polymerase III beta subunit [Enterovibrio sp. AK16]
Length = 366
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 170/298 (57%), Gaps = 2/298 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
++ L PLQ V + + LPIL NIL+ ++S TD EV++ +
Sbjct: 7 RDQFLKPLQQVSGALGGRPTLPILGNILLKVEFGQLSMTCTDLEVELIANLPLESEAEDG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
+ V +RKF+DI R LP++ ++ +E I+SG+S+FTL TL A ++P + + + +
Sbjct: 67 AVTVPSRKFLDICRGLPDSAPISFTLEGDRAVIRSGRSRFTLSTLPAADFPNIE-DWQSN 125
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
EFT+ Q L+ ++ FS+A QD+RY+LNG+LL + +V++DGHR+ +D
Sbjct: 126 VEFTVPQGKLRQLIESTAFSMANQDVRYFLNGMLLETDGTTLRSVATDGHRMAVGTTALD 185
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ + +I+PRK V L R+L+N E PV ++I + I+ + SKL+DG+F DY
Sbjct: 186 NQLAG-QQVIVPRKGVTELMRMLDNPEAPVTIQIGSANIRAQVNQFVFTSKLVDGRFPDY 244
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ V+ K + ++L ++ R +I+SN+K +GVRL + L+I+ + +E+A
Sbjct: 245 RRVMPQSSNKIMEADCDELRQAFSRAAILSNEKFRGVRLNLSSGQLRISAHNPEQEEA 302
>gi|27364432|ref|NP_759960.1| DNA polymerase III subunit beta [Vibrio vulnificus CMCP6]
gi|27360551|gb|AAO09487.1| DNA polymerase III, beta subunit [Vibrio vulnificus CMCP6]
Length = 366
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 179/298 (60%), Gaps = 2/298 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
++ + PLQ V + + LPIL N+L+ + ++S +TD EV++ + + +
Sbjct: 7 RSHFIKPLQQVSGALGGRPTLPILGNLLINVENGQLSMTATDLEVELISKVTLEGEFEAG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
+I V +RKFIDI R LP+ +T +E + ++SG+S+F+L TL A ++P + + + +
Sbjct: 67 SITVPSRKFIDICRGLPDDAVITFVLEGDRVQVRSGRSRFSLATLPANDFPNIE-DWQSE 125
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
E +L+Q L+ ++ FS+A QD+RYYLNG+L + + +V++DGHR+ Q +
Sbjct: 126 VEVSLTQGELRALIEKTQFSMANQDVRYYLNGMLFEIEGSTLRSVATDGHRMAVAQAALS 185
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
F+ II+PRK V L +LL+ E PV L+I ++ ++ ++ SKL+DG+F DY
Sbjct: 186 ADFAQ-KQIIVPRKGVQELVKLLDTPEQPVTLQIGSSNLRAEVNHFVFTSKLVDGRFPDY 244
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ V+ K+ + ++L ++ R +I+SN+K +GVR+ + + ++IT ++ +E+A
Sbjct: 245 RRVLPQHTTKTLEASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITANNPEQEEA 302
>gi|424048398|ref|ZP_17785951.1| DNA polymerase III, beta subunit [Vibrio cholerae HENC-03]
gi|408882637|gb|EKM21443.1| DNA polymerase III, beta subunit [Vibrio cholerae HENC-03]
Length = 366
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ +S +TD EV++ + A+ +
Sbjct: 6 ERSHLIKPLQQVSGALGGRPTLPILGNLLIKVEENVLSMTATDLEVELVSKVALEGDFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V +RKF+DI R LP+ +T +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPSRKFLDICRGLPDYSIITFVLEGDRVQVRSGRSRFSLATLPANDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVEVSLTQSDLRTLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVSQTQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +L++ E PV L+I ++ ++ +N SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ + ++L ++ R +I+SN+K +GVR+ + + ++IT ++ +E+A
Sbjct: 244 YRRVMPQSTTKTLEASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITANNPEQEEA 302
>gi|344339920|ref|ZP_08770847.1| DNA polymerase III, beta subunit [Thiocapsa marina 5811]
gi|343800099|gb|EGV18046.1| DNA polymerase III, beta subunit [Thiocapsa marina 5811]
Length = 366
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 171/301 (56%), Gaps = 14/301 (4%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+LVVN E +L L V+ +VE++ LPIL N+L+ + +++ TD EV++ T
Sbjct: 1 MELVVNREN--LLPVLSKVVGVVERRQTLPILGNLLLSASDDRLDICGTDLEVEVKTSC- 57
Query: 61 VGYGNSSI----NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAK 116
N+S+ + ARK +DI R+L E ++ N+ + +G+ +FTL L A
Sbjct: 58 ----NASVLREGETTLPARKLMDICRNLSEGTEIRFRQTNERCLVTAGRGRFTLGALPAP 113
Query: 117 EYPIMTLNSKYD-FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSS 175
++P+M +++ D E + ++ L+ IL F++AQQD+RYYLNGLL+ ++ I AV +
Sbjct: 114 DFPLM--DAEIDGVEVKVPERILREILEKTSFAMAQQDVRYYLNGLLVEWEHSGITAVGT 171
Query: 176 DGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIE 235
DGHRL + +D + +I+P KTV L+R L + V + + + I++ +
Sbjct: 172 DGHRLAKFHRALDLEIPEPVQVIVPSKTVLELRRQLAPTDEAVSVAVGSKSIRVAVGGMV 231
Query: 236 IISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLK 295
+ SKL+DG++ +Y VI + K V L R+L R SI+SN+K +GVRL + L+
Sbjct: 232 MTSKLVDGRYPEYGRVIPRELGKVARVGNEALKRALARTSILSNEKYRGVRLAFEEGVLR 291
Query: 296 I 296
+
Sbjct: 292 L 292
>gi|16272930|ref|NP_439155.1| DNA polymerase III subunit beta [Haemophilus influenzae Rd KW20]
gi|260580083|ref|ZP_05847913.1| DNA polymerase III, beta subunit [Haemophilus influenzae RdAW]
gi|1169393|sp|P43744.1|DPO3B_HAEIN RecName: Full=DNA polymerase III subunit beta
gi|1574022|gb|AAC22654.1| DNA polymerase III, beta subunit (dnaN) [Haemophilus influenzae Rd
KW20]
gi|260093367|gb|EEW77300.1| DNA polymerase III, beta subunit [Haemophilus influenzae RdAW]
Length = 366
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 181/307 (58%), Gaps = 6/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ +++ TD EV++++ T
Sbjct: 1 MQFSISREN--LLKPLQQVCGVLSNRPNIPVLNNVLLQIEDYRLTITGTDLEVELSSQTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+KF+DI R+L + ++T+ E ++SG+S+FTL T A+EYP
Sbjct: 59 LSSSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRALVQSGRSRFTLATQPAEEYPN 118
Query: 121 MT-LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+T S+ DFE L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHR
Sbjct: 119 LTDWQSEVDFE--LPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHR 176
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L ++++++ + S +I+PRK V L RLLE + P L+I N +++ N SK
Sbjct: 177 LAVCTISLEQELQNHS-VILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTSK 235
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG+F DY+ V+ K N L ++ R SI+SN++ + VRL +K N LKIT S
Sbjct: 236 LIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFARASILSNERARSVRLSLKENQLKITAS 295
Query: 300 SSNREKA 306
++ E+A
Sbjct: 296 NTEHEEA 302
>gi|410629484|ref|ZP_11340184.1| DNA polymerase III subunit beta [Glaciecola arctica BSs20135]
gi|410150969|dbj|GAC17051.1| DNA polymerase III subunit beta [Glaciecola arctica BSs20135]
Length = 367
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 172/294 (58%), Gaps = 1/294 (0%)
Query: 13 LHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIV 72
L PLQ+V VE+++ LPILSN+L+ + + TD EV++ + + I V
Sbjct: 11 LQPLQLVSGAVERRHTLPILSNVLIKVSDNSLWLTGTDLEVELISNVTLSGDFVEGEITV 70
Query: 73 AARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFT 132
A+K +DI R L E + +E +KSG+SK++L TL A +YP + + + + EF
Sbjct: 71 PAKKLLDICRGLNEGSSIDFSVEANKALLKSGRSKYSLSTLSADDYPNLE-DWQGELEFE 129
Query: 133 LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFS 192
+ Q LK +++ +F +AQQD+RYYLNG+ L + I V++DGHRL ++N
Sbjct: 130 IPQSDLKRLIDSTHFCMAQQDVRYYLNGMSLETEDNLIRTVATDGHRLALCRLNYTNATL 189
Query: 193 SCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVI 252
+IIPRK V + RL+E+ + V++++ +N I+I ++ SKL+DG+F DY+ V+
Sbjct: 190 PNRQVIIPRKGVLEIIRLIEDNDKLVKVQVGSNHIRIFSTDFIFTSKLVDGRFPDYRRVL 249
Query: 253 SNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+K +++ L + R SI+SN+K +GVRL + LKIT ++ +E+A
Sbjct: 250 PKDGDKKIESSKDVLKHAFSRASILSNEKFRGVRLNLSNGELKITANNPEQEEA 303
>gi|113460283|ref|YP_718342.1| DNA polymerase III subunit beta [Haemophilus somnus 129PT]
gi|170718298|ref|YP_001783357.1| DNA polymerase III subunit beta [Haemophilus somnus 2336]
gi|112822326|gb|ABI24415.1| DNA polymerase III, beta subunit [Haemophilus somnus 129PT]
gi|168826427|gb|ACA31798.1| DNA polymerase III, beta subunit [Haemophilus somnus 2336]
Length = 366
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/315 (33%), Positives = 180/315 (57%), Gaps = 5/315 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ +V+ E +L PLQ V ++ + PIL+N+L+ + TD EV+++T
Sbjct: 1 MQFIVSREH--LLKPLQQVCGVLSSRPNFPILNNVLLQIEGNVLRITGTDLEVELSTQAQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+KF+DI RS P+ ++T+ E + ++SG+SKF L L A EYP
Sbjct: 59 LIQASQDGSYTIPAKKFLDICRSFPDEAEITVIFEEERALVRSGRSKFNLTALPADEYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + + +F L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHRL
Sbjct: 119 LA-DWQSEVDFYLPQSTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ +++ + + +I+PRK + L RLLEN E+ ++I N ++I +I SKL
Sbjct: 178 AVCTIPLEQDLHTHA-VILPRKGILELMRLLENSEHAAHVQIGTNNLRIDLGSIIFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ N L ++ R++I+S+DK+K VRL + N LKIT ++
Sbjct: 237 IDGRFPDYRRVLPRNATHIMEGNWELLKQAFARMAILSSDKVKTVRLQLTSNQLKITATN 296
Query: 301 SNREKASST-DLIYH 314
+E A D+IY+
Sbjct: 297 PEQEVAEEILDVIYN 311
>gi|425896673|ref|ZP_18873264.1| DNA polymerase III, beta subunit [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397881787|gb|EJK98275.1| DNA polymerase III, beta subunit [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
Length = 367
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 159/289 (55%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SL + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLANDALIDIKVDEQKLVVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
L Q L+ ++ F++AQQD+RYYLNG+LL I AV++DGHRL +
Sbjct: 125 SLTCQLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGIIRAVATDGHRLAMCSMQA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
D +I+PRK + L RLL + V + + + I+ SKL+DGKF D
Sbjct: 185 DIGQPDRHQVIVPRKGILELARLLTEPDGIVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K L +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKI 293
>gi|319775074|ref|YP_004137562.1| DNA polymerase III subunit beta [Haemophilus influenzae F3047]
gi|329123015|ref|ZP_08251586.1| DNA-directed DNA polymerase III beta subunit [Haemophilus aegyptius
ATCC 11116]
gi|317449665|emb|CBY85871.1| DNA polymerase III, beta subunit [Haemophilus influenzae F3047]
gi|327471946|gb|EGF17386.1| DNA-directed DNA polymerase III beta subunit [Haemophilus aegyptius
ATCC 11116]
Length = 366
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 181/307 (58%), Gaps = 6/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ +++ TD EV++++ T
Sbjct: 1 MQFSISREN--LLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+KF+DI R+L + ++T+ E ++SG+S+FTL T A+EYP
Sbjct: 59 LSSSSENGTFTIPAKKFLDICRTLSDESEITVTFEQDRALVQSGRSRFTLTTQPAEEYPN 118
Query: 121 MT-LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+T S+ DFE L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHR
Sbjct: 119 LTDWQSEVDFE--LPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHR 176
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L ++++++ + S +I+PRK V L RLLE + P L+I N +++ N SK
Sbjct: 177 LAVCTISLEQELQNHS-VILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTSK 235
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG+F DY+ V+ K N L ++ R SI+SN++ + VRL +K N LKIT S
Sbjct: 236 LIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITAS 295
Query: 300 SSNREKA 306
++ E+A
Sbjct: 296 NTEHEEA 302
>gi|219871633|ref|YP_002476008.1| DNA polymerase III subunit beta [Haemophilus parasuis SH0165]
gi|219691837|gb|ACL33060.1| DNA polymerase III subunit beta [Haemophilus parasuis SH0165]
Length = 367
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 183/310 (59%), Gaps = 11/310 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITT--- 57
MQ + E+ +L PLQ V ++ + LP+++NIL+ ++S TD EV++TT
Sbjct: 1 MQFTITREQ--LLKPLQQVCGVLTSRPTLPVINNILLEIEGSRLSLTGTDLEVELTTQAE 58
Query: 58 -YTAVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAK 116
+ AV + S + A+KF+DI RSLP+ +++ + +FI++ +SKF L TL A
Sbjct: 59 LFEAVSF---SGKFTIPAKKFLDICRSLPDDSVISVQFDEDRVFIRADRSKFNLATLPAS 115
Query: 117 EYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSD 176
+YP + ++ K + +FT+ Q TL ++ FS+A QD RY+LNG+ + + +V++D
Sbjct: 116 DYPSL-MDWKPEVDFTIEQATLARLIEATQFSMANQDARYFLNGMKFETEGNLLRSVATD 174
Query: 177 GHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEI 236
GHRL + ++++ + S +I+PRK V L RL+ + V L+I + +++ + I
Sbjct: 175 GHRLAVCTMALNQELLTHS-VIVPRKAVLELVRLVGHNNESVRLEIGTSNLRVSMNGIVF 233
Query: 237 ISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
SKLIDG+F DY+ V+ ++ + L +L R +I+SN++ +GVRL + N LKI
Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEADAEVLKHALVRAAILSNERFRGVRLALNQNLLKI 293
Query: 297 TVSSSNREKA 306
T ++ +E+A
Sbjct: 294 TANNPEQEEA 303
>gi|240950076|ref|ZP_04754378.1| DNA polymerase III subunit beta [Actinobacillus minor NM305]
gi|240295451|gb|EER46206.1| DNA polymerase III subunit beta [Actinobacillus minor NM305]
Length = 367
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/309 (34%), Positives = 180/309 (58%), Gaps = 6/309 (1%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG-NSS 67
+ ++ PLQ V ++ + LP+++N+L+ +++ TD EV++TT + + S
Sbjct: 7 REQLIKPLQQVCGVLSSRPTLPVIANLLLEVEGDRLLMTGTDLEVELTTEARLAQEVDFS 66
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP-IMTLNSK 126
+ A+KF+DI RSLPE +++ E +K+G+SKF+L TL A +YP +M +
Sbjct: 67 EKFTIPAKKFLDISRSLPEDSLISMSFEEDKAILKAGRSKFSLATLPASDYPNLMDWTPE 126
Query: 127 YDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVN 186
DF ++ Q TL +++ FS+A QD RY+LNG+ + + V++DGHRL +
Sbjct: 127 VDF--SIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRLAVCTMA 184
Query: 187 IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFL 246
+ ++ +S S +I+PRK V L RL+ + V L+I ++ I+I + I SKLIDG+F
Sbjct: 185 LTQELASHS-VIVPRKAVLELSRLVSANHDIVRLEIGSSNIRISMNGIVFTSKLIDGRFP 243
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
DY+ V+ ++ + L R+L R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 DYRRVLPRNADRILEADTETLKRALMRAAILSNEKFRGVRLSLNDNVLKITANNPEQEEA 303
Query: 307 SS-TDLIYH 314
D+ Y
Sbjct: 304 EEIIDVAYQ 312
>gi|312882234|ref|ZP_07741980.1| DNA polymerase III subunit beta [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309370078|gb|EFP97584.1| DNA polymerase III subunit beta [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 366
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 180/299 (60%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
+++ +L PLQ V + + LPIL N+L+ + +TD EV++ + + +
Sbjct: 6 QRSHLLKPLQQVSGALGGRPTLPILGNLLLKVADGMLLITATDLEVELISRVNLEGEFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V +RKF+DI R LP+ +T +E + I+SG+S+F+L TL A ++P + + +
Sbjct: 66 GTITVPSRKFLDICRGLPDEAVITFVLEGDRVQIRSGRSRFSLSTLPAHDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ QVN+
Sbjct: 125 EVEVSLTQAELRTLVEKTQFSMANQDVRYYLNGMLFELDGTTLSSVATDGHRMAMAQVNL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ +F+ II+PRK V L +LL+ E V L++ ++ ++ +N SKL+DG+F D
Sbjct: 185 EGEFAQ-QQIIVPRKGVLELVKLLDAPEQKVVLQVGSSNVRAEVNNYVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+S K+ L + ++L + R +I+SN+K +GVR+ + + ++IT ++ +E+A
Sbjct: 244 YRRVMSLTPSKTLLADCDQLKHAFSRAAILSNEKFRGVRVNLTDSEMRITANNPEQEEA 302
>gi|410620679|ref|ZP_11331539.1| DNA polymerase III subunit beta [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410159786|dbj|GAC26913.1| DNA polymerase III subunit beta [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 367
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 172/298 (57%), Gaps = 1/298 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ +L PLQ+V VE+++ LPILSN+L+ + + TD EV++ + + +
Sbjct: 7 REGLLQPLQLVSGAVERRHTLPILSNVLIKVSEGTLWLTGTDLEVELISSVKLSGSFTDG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
I V A+K +DI+R + + +E IKSG+ K+TL TL A +YP + + + +
Sbjct: 67 EITVPAKKLVDIIRGINGESNIIFEVEENKAIIKSGRGKYTLSTLSASDYPNLD-DWEGE 125
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
EF + Q LK ++ +FS+AQQD+RYYLNG+ L ++ I V++DGHRL ++
Sbjct: 126 VEFEVKQSDLKGLIEKTHFSMAQQDVRYYLNGMSLETEEHIIRTVATDGHRLALSTLDYV 185
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+IIPRK V + RL++ + V+++I +N I+I ++ SKL+DG+F DY
Sbjct: 186 ASALPARQVIIPRKGVLEIIRLIDYNDTLVKVQIGSNHIRIYSTDFIFTSKLVDGRFPDY 245
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ V+ +KS +R L + R I+SN+K KGVRL + LKIT ++ +E+A
Sbjct: 246 RRVLPKGSDKSVWSSRELLKAAFSRAMILSNEKFKGVRLNLVSGELKITANNPEQEQA 303
>gi|145638186|ref|ZP_01793796.1| DNA polymerase III subunit beta [Haemophilus influenzae PittII]
gi|145272515|gb|EDK12422.1| DNA polymerase III subunit beta [Haemophilus influenzae PittII]
Length = 366
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 181/307 (58%), Gaps = 6/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ +++ TD EV++++ T
Sbjct: 1 MQFSISREN--LLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+KF+DI R+L + ++T+ E ++SG+S+FTL T A+EYP
Sbjct: 59 LSSSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRALVQSGRSRFTLTTQPAEEYPN 118
Query: 121 MT-LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+T S+ DFE L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHR
Sbjct: 119 LTDWQSEVDFE--LPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHR 176
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L ++++++ + S +I+PRK V L RLLE + P L+I N +++ N SK
Sbjct: 177 LAVCTISLEQELQNHS-VILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTSK 235
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG+F DY+ V+ K N L ++ R SI+SN++ + VRL +K N LKIT S
Sbjct: 236 LIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITAS 295
Query: 300 SSNREKA 306
++ E+A
Sbjct: 296 NTEHEEA 302
>gi|148980123|ref|ZP_01815903.1| DNA polymerase III subunit beta [Vibrionales bacterium SWAT-3]
gi|145961424|gb|EDK26730.1| DNA polymerase III subunit beta [Vibrionales bacterium SWAT-3]
Length = 356
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 174/294 (59%), Gaps = 2/294 (0%)
Query: 13 LHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIV 72
+ PLQ V + + LPIL N+L+ +S +TD EV++ + + + +I V
Sbjct: 1 MKPLQQVSGALGGRPTLPILGNLLIKVEDNVLSMTATDLEVELISRVTLEGDFEAGSITV 60
Query: 73 AARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFT 132
+RKF+DI R LP++ +T+ ++ + ++SG+S+F+L TL A ++P + + + E +
Sbjct: 61 PSRKFLDICRGLPDSSVITVVLDGDRVQVRSGRSRFSLATLPAADFPNIE-DWSSEVEVS 119
Query: 133 LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFS 192
++Q L+ ++ FS+A QD+RYYLNG+L + + +V++DGHR+ Q + F+
Sbjct: 120 VTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIEGSTLRSVATDGHRMAVSQAQLGADFA 179
Query: 193 SCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVI 252
II+PRK V L +LL+ E PV L+I N+ ++ +N SKL+DG+F DY+ V+
Sbjct: 180 Q-KQIIVPRKGVQELVKLLDAPEQPVTLQIGNSNVRAEVNNYVFTSKLVDGRFPDYRRVM 238
Query: 253 SNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
K+ ++L + R +I+SN+K +GVR+ + + ++IT ++ +E+A
Sbjct: 239 PQNTTKTLEAGCDELRSAFSRAAILSNEKFRGVRVNLADSEMRITANNPEQEEA 292
>gi|442609903|ref|ZP_21024633.1| DNA polymerase III beta subunit [Pseudoalteromonas luteoviolacea B
= ATCC 29581]
gi|441748623|emb|CCQ10695.1| DNA polymerase III beta subunit [Pseudoalteromonas luteoviolacea B
= ATCC 29581]
Length = 367
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 172/298 (57%), Gaps = 3/298 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ+ ++ ++ L PL V +E+K+ LPIL+N+L+ K+S TD E+++
Sbjct: 1 MQITIS--RDQFLKPLMQVSGAIERKHTLPILANVLLEVKDGKLSMTGTDLEIELVACVE 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ I + A+K +DI +SLP++ +T+ + + + SG+S+F+L TL A+++P
Sbjct: 59 LDTQAMDAKITLPAKKLLDICKSLPDSSTLTLTSQEHQLLLTSGQSRFSLTTLAAEDFPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + EF L++ L+ +L FS+A QD+RYYLNG+ ++I V++DGHRL
Sbjct: 119 LE-SWDGEVEFQLTRLELRALLESTAFSMANQDVRYYLNGMSFEVDNQDIKTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
Q + + + +IIPRK V + RL+ + + ++ N ++I+ S SKL
Sbjct: 178 ALAQARLVESVGTQRQLIIPRKGVQEIMRLMIADDTLIAIQFGANHVRIVDSEFTFTSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
+DG+F DY+ V+ +K NR+ L + QR+SI+SN+K +GVRL + LKI+
Sbjct: 238 VDGRFPDYRRVLPRGGDKIVTANRDWLRSAFQRVSILSNEKFRGVRLNLSSGLLKISA 295
>gi|343499281|ref|ZP_08737264.1| DNA polymerase III subunit beta [Vibrio tubiashii ATCC 19109]
gi|418479440|ref|ZP_13048522.1| DNA polymerase III subunit beta [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342823156|gb|EGU57812.1| DNA polymerase III subunit beta [Vibrio tubiashii ATCC 19109]
gi|384572951|gb|EIF03455.1| DNA polymerase III subunit beta [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 366
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L PLQ V + + LPIL N+L+ +S +TD EV++ + + +
Sbjct: 6 ERSHLLKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELISRVNLEGEFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V +RKF+DI R LP+ +T +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPSRKFLDICRGLPDDSVITFVLEGDRVQVRSGRSRFSLSTLPANDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVEVSLTQAELRGLVEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVSQTEL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +LL+ E PV L+I ++ ++ +N SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGSSNVRAEVNNYVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ ++L ++ R +I+SN+K +GVR+ + ++IT ++ +E+A
Sbjct: 244 YRRVMPQTTTKTLEAGCDELRQAFSRAAILSNEKFRGVRVNLADTEMRITANNPEQEEA 302
>gi|333906404|ref|YP_004479990.1| DNA polymerase III subunit beta [Marinomonas posidonica
IVIA-Po-181]
gi|333476410|gb|AEF53071.1| DNA polymerase III, beta subunit [Marinomonas posidonica
IVIA-Po-181]
Length = 365
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/306 (33%), Positives = 178/306 (58%), Gaps = 3/306 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ +L PLQ+V +VE+K +P+L+N+LV + ++ +D EV++ + +
Sbjct: 7 RETLLKPLQLVAGVVERKQTMPVLANVLVEVKDQILTLTGSDLEVELVGHVPLDECEEG- 65
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
I V ARK +DI +SLP++ + ++ + I+SG+S+F+L TL A E+P + + + D
Sbjct: 66 RITVPARKLMDICKSLPDSAVIEFTLDEQKAVIRSGRSRFSLSTLPADEFPNIQ-DMQGD 124
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
++Q +++ +++ F++A QD+RYYLNG+LL + V++DGHRL V
Sbjct: 125 LTVAIAQNSVRRLIDRTGFAMANQDVRYYLNGMLLEVADGQLRVVATDGHRLATA-VEDA 183
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ + +I+PRK V L RLL + + VE+ I N I+ ++ SKL+DGKF DY
Sbjct: 184 QVSGDLTQVIVPRKGVLELNRLLSDTDELVEIAIGTNHIRAKVADYVFTSKLVDGKFPDY 243
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASS 308
VI EK + +R +L + R SI+SN+K +GVRL++ L++ ++ +E+A
Sbjct: 244 HRVIPRNNEKIVIADRLELRQVFLRASILSNEKYRGVRLILSNGMLQVFANNPEQEEAEE 303
Query: 309 TDLIYH 314
+ L+ +
Sbjct: 304 SVLVQY 309
>gi|378697200|ref|YP_005179158.1| DNA polymerase III subunit beta [Haemophilus influenzae 10810]
gi|301169718|emb|CBW29319.1| DNA polymerase III, beta subunit [Haemophilus influenzae 10810]
Length = 366
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 181/307 (58%), Gaps = 6/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ +++ TD EV++++ T
Sbjct: 1 MQFSISREN--LLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+KF+DI R+L + ++T+ E ++SG+S+FTL T A+EYP
Sbjct: 59 LSSSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRALVQSGRSRFTLTTQPAEEYPN 118
Query: 121 MT-LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+T S+ DFE L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHR
Sbjct: 119 LTDWQSEVDFE--LPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLRTVATDGHR 176
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L ++++++ + S +I+PRK V L RLLE + P L+I N +++ N SK
Sbjct: 177 LAVCTISLEQELQNHS-VILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTSK 235
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG+F DY+ V+ K N L ++ R SI+SN++ + VRL +K N LKIT S
Sbjct: 236 LIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITAS 295
Query: 300 SSNREKA 306
++ E+A
Sbjct: 296 NTEHEEA 302
>gi|86147176|ref|ZP_01065492.1| DNA polymerase III subunit beta [Vibrio sp. MED222]
gi|85835060|gb|EAQ53202.1| DNA polymerase III subunit beta [Vibrio sp. MED222]
Length = 366
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 178/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ +S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGALGGRPTLPILGNLLIKVEDNVLSMTATDLEVELISRVTLEGDFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V +RKF+DI R LP++ +T+ ++ + ++SG+S+F+L TL A ++P + +
Sbjct: 66 GSITVPSRKFLDICRGLPDSSVITVVLDGDRIQVRSGRSRFSLATLPAADFPNIE-DWSS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +++Q L+ ++ FS+A QD+RYYLNG+L + + +V++DGHR+ Q +
Sbjct: 125 EVEVSVTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIEGSILRSVATDGHRMAVSQAQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +LL+ E PV L+I N+ ++ +N SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVQELVKLLDAPEQPVTLQIGNSNVRAEVNNYVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ ++L + R +I+SN+K +GVR+ + + ++IT ++ +E+A
Sbjct: 244 YRRVMPQNTTKTLEAGCDELRSAFSRAAILSNEKFRGVRVNLVDSEMRITANNPEQEEA 302
>gi|145640666|ref|ZP_01796249.1| DNA polymerase III subunit beta [Haemophilus influenzae R3021]
gi|145274592|gb|EDK14455.1| DNA polymerase III subunit beta [Haemophilus influenzae 22.4-21]
Length = 366
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 181/307 (58%), Gaps = 6/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ +++ TD EV++++ T
Sbjct: 1 MQFSISREN--LLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+KF+DI R+L + ++T+ E ++SG+S+FTL T A+EYP
Sbjct: 59 LSSSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRALVQSGRSRFTLTTQPAEEYPN 118
Query: 121 MT-LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+T S+ DFE L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHR
Sbjct: 119 LTDWQSEVDFE--LPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLRTVATDGHR 176
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L ++++++ + S +I+PRK V L RLLE + P L+I N +++ N SK
Sbjct: 177 LAVCTISLEQELQNHS-VILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTSK 235
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG+F DY+ V+ K N L ++ R SI+SN++ + VRL +K N LKIT S
Sbjct: 236 LIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITAS 295
Query: 300 SSNREKA 306
++ E+A
Sbjct: 296 NTEHEEA 302
>gi|309751342|gb|ADO81326.1| DNA polymerase III beta subunit [Haemophilus influenzae R2866]
Length = 366
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 181/307 (58%), Gaps = 6/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ +++ TD EV++++ T
Sbjct: 1 MQFSISREN--LLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+KF+DI R+L + ++T+ E ++SG+S+FTL T A+EYP
Sbjct: 59 LSSSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRALVQSGRSRFTLTTQPAEEYPN 118
Query: 121 MT-LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+T S+ DFE L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHR
Sbjct: 119 LTDWQSEVDFE--LPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLRTVATDGHR 176
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L ++++++ + S +I+PRK V L RLLE + P L+I N +++ N SK
Sbjct: 177 LAVCTISLEQELQNHS-VILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTSK 235
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG+F DY+ V+ K N L ++ R SI+SN++ + VRL +K N LKIT S
Sbjct: 236 LIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITAS 295
Query: 300 SSNREKA 306
++ E+A
Sbjct: 296 NTEHEEA 302
>gi|229846050|ref|ZP_04466162.1| DNA polymerase III subunit beta [Haemophilus influenzae 7P49H1]
gi|229811054|gb|EEP46771.1| DNA polymerase III subunit beta [Haemophilus influenzae 7P49H1]
Length = 366
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 181/306 (59%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ +++ TD EV++++ T
Sbjct: 1 MQFSISREN--LLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+KF+DI R+L + ++T+ E ++SG+S+FTL T A+EYP
Sbjct: 59 LSSSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRALVQSGRSRFTLTTQPAEEYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+T + + + +F L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHRL
Sbjct: 119 LT-DWQSEVDFQLPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
++++++ + S +I+PRK V L RLLE + P L+I N +++ N SKL
Sbjct: 178 AVCTISLEQELQNHS-VILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ K N L ++ R SI+SN++ + VRL +K N LKIT S+
Sbjct: 237 IDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITASN 296
Query: 301 SNREKA 306
+ E+A
Sbjct: 297 TEHEEA 302
>gi|161831398|ref|YP_001595902.1| DNA polymerase III subunit beta [Coxiella burnetii RSA 331]
gi|161763265|gb|ABX78907.1| DNA polymerase III, beta subunit [Coxiella burnetii RSA 331]
Length = 369
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 181/303 (59%), Gaps = 2/303 (0%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
+N + +L PLQ+VI +VE+K LPILSN+L+ ++++S TD EV++ T +
Sbjct: 3 LNLIRETLLKPLQLVIGVVERKQTLPILSNVLLSIETDQLSITGTDLEVELIGQTKLDKN 62
Query: 65 NS-SINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTL 123
++ S + + RK +DI R+LP+ + +Y + + + ++SG+S+F L TL ++++P +
Sbjct: 63 STESSRLTLPGRKLMDICRALPDNAPIELYRDKEKIILRSGRSRFMLSTLPSEDFPAVE- 121
Query: 124 NSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
+ E L Q T + +L +F++AQQD+RYYLNGLLL + A+++DGHRL
Sbjct: 122 RRESQLELALPQSTFRHLLYRTHFAMAQQDVRYYLNGLLLETYPNKLRAIATDGHRLAAN 181
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDG 243
+ + IIIPRK + L RLLE E ++I NN I + ++ SKLI+G
Sbjct: 182 TLLVQTNTEHRLQIIIPRKGIIELLRLLEEDEALAAIRIGNNHIGVSTNDFTFTSKLIEG 241
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNR 303
+F D + VI +K F+++R+ L ++L R +I+ N+K KGVR ++ L+I ++ +
Sbjct: 242 RFPDCERVIPKGGDKQFVIDRDILKQALSRTAILCNEKFKGVRFELRQGLLRILATNPEQ 301
Query: 304 EKA 306
E A
Sbjct: 302 EAA 304
>gi|145632378|ref|ZP_01788113.1| DNA polymerase III subunit beta [Haemophilus influenzae 3655]
gi|145637298|ref|ZP_01792959.1| DNA polymerase III subunit beta [Haemophilus influenzae PittHH]
gi|144987285|gb|EDJ93815.1| DNA polymerase III subunit beta [Haemophilus influenzae 3655]
gi|145269550|gb|EDK09492.1| DNA polymerase III subunit beta [Haemophilus influenzae PittHH]
Length = 366
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 181/306 (59%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ +++ TD EV++++ T
Sbjct: 1 MQFSISREN--LLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+KF+DI R+L + ++T+ E ++SG+S+FTL T A+EYP
Sbjct: 59 LSSSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRALVQSGRSRFTLTTQPAEEYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+T + + + +F L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHRL
Sbjct: 119 LT-DWQSEVDFQLPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
++++++ + S +I+PRK V L RLLE + P L+I N +++ N SKL
Sbjct: 178 AVCTISLEQELQNHS-VILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ K N L ++ R SI+SN++ + VRL +K N LKIT S+
Sbjct: 237 IDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITASN 296
Query: 301 SNREKA 306
+ E+A
Sbjct: 297 TEHEEA 302
>gi|218708099|ref|YP_002415720.1| DNA polymerase III subunit beta [Vibrio splendidus LGP32]
gi|407069481|ref|ZP_11100319.1| DNA polymerase III subunit beta [Vibrio cyclitrophicus ZF14]
gi|218321118|emb|CAV17068.1| DNA polymerase III beta subunit [Vibrio splendidus LGP32]
Length = 366
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 178/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ +S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGALGGRPTLPILGNLLIKVEDNVLSMTATDLEVELISRVTLEGDFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V +RKF+DI R LP++ +T+ ++ + ++SG+S+F+L TL A ++P + +
Sbjct: 66 GSITVPSRKFLDICRGLPDSSVITVVLDGDRIQVRSGRSRFSLATLPAADFPNIE-DWSS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +++Q L+ ++ FS+A QD+RYYLNG+L + + +V++DGHR+ Q +
Sbjct: 125 EVEVSVTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIEGSILRSVATDGHRMAVSQAQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +LL+ E PV L+I N+ ++ +N SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVQELVKLLDAPEQPVTLQIGNSNVRAEVNNYVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ ++L + R +I+SN+K +GVR+ + + ++IT ++ +E+A
Sbjct: 244 YRRVMPQNTTKTLEAGCDELRSAFSRAAILSNEKFRGVRVNLVDSEMRITANNPEQEEA 302
>gi|145630088|ref|ZP_01785870.1| DNA polymerase III subunit beta [Haemophilus influenzae R3021]
gi|144984369|gb|EDJ91792.1| DNA polymerase III subunit beta [Haemophilus influenzae R3021]
Length = 366
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 181/306 (59%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ +++ TD EV++++ T
Sbjct: 1 MQFSISREH--LLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+KF+DI R+L + ++T+ E ++SG+S+FTL T A+EYP
Sbjct: 59 LSSSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRALVQSGRSRFTLTTQPAEEYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+T + + + +F L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHRL
Sbjct: 119 LT-DWQSEVDFQLPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
++++++ + S +I+PRK V L RLLE + P L+I N +++ N SKL
Sbjct: 178 AVCTISLEQELQNHS-VILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ K N L ++ R SI+SN++ + VRL +K N LKIT S+
Sbjct: 237 IDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITASN 296
Query: 301 SNREKA 306
+ E+A
Sbjct: 297 TEHEEA 302
>gi|320157815|ref|YP_004190194.1| DNA polymerase III subunit beta [Vibrio vulnificus MO6-24/O]
gi|319933127|gb|ADV87991.1| DNA polymerase III beta subunit [Vibrio vulnificus MO6-24/O]
Length = 366
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 179/298 (60%), Gaps = 2/298 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
++ + PLQ V + + LPIL N+L+ + ++S +TD EV++ + + +
Sbjct: 7 RSHFIKPLQQVSGALGGRPTLPILGNLLINVENGQLSMTATDLEVELISKVTLEGEFEAG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
+I V +RKF+DI R LP+ +T +E + ++SG+S+F+L TL A ++P + + + +
Sbjct: 67 SITVPSRKFLDICRGLPDDAVITFVLEGDRVQVRSGRSRFSLATLPANDFPNIE-DWQSE 125
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
E +L+Q L+ ++ FS+A QD+RYYLNG+L + + +V++DGHR+ Q +
Sbjct: 126 VEVSLTQGELRALIEKTQFSMANQDVRYYLNGMLFEIEGSTLRSVATDGHRMAVAQAALS 185
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
F+ II+PRK V L +LL+ E PV L+I ++ ++ ++ SKL+DG+F DY
Sbjct: 186 ADFAQ-KQIIVPRKGVQELVKLLDTPEQPVTLQIGSSNLRAEVNHFVFTSKLVDGRFPDY 244
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ V+ K+ + ++L ++ R +I+SN+K +GVR+ + + ++IT ++ +E+A
Sbjct: 245 RRVLPQHTTKTLEASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITANNPEQEEA 302
>gi|350529816|ref|ZP_08908757.1| DNA polymerase III subunit beta [Vibrio rotiferianus DAT722]
Length = 366
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 178/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ +S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGALGGRPTLPILGNLLIKVEENVLSMTATDLEVELVSKVTLEGDFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V +RKF+DI R LP+ +T +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPSRKFLDICRGLPDDAIITFVLEGDRVQVRSGRSRFSLATLPANDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVEVSLTQSELRTLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVSQTQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +L++ E PV L+I ++ ++ +N SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ + ++L ++ R +I+SN+K +GVR+ + + ++IT ++ +E+A
Sbjct: 244 YRRVMPQSTTKTLEASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITANNPEQEEA 302
>gi|430763062|ref|YP_007218919.1| DNA polymerase III beta subunit [Thioalkalivibrio nitratireducens
DSM 14787]
gi|430012686|gb|AGA35438.1| DNA polymerase III beta subunit [Thioalkalivibrio nitratireducens
DSM 14787]
Length = 366
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 161/288 (55%), Gaps = 2/288 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
++ + LQ ++ EK+ +PIL N+ + E I +TD E+ T+ G + +
Sbjct: 7 RDTMTETLQRIVGAAEKRLTMPILGNVRIRAGGEGIQLDTTDLELAWKA-TSAGEISPGV 65
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
++ VA +K +DI+R+ P + +E H+ + G S+F+L TL +YP L S +
Sbjct: 66 DVTVAVKKLLDIVRAAPPESTIQARVEGDHLSVGFGASRFSLATLPGADYPEWELES-IE 124
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
+ Q+ L+ ++ FS+AQQD+RYYL GLLL Q + AV++DGHRL + +++
Sbjct: 125 HWVEMPQRLLRRLIEATMFSMAQQDVRYYLQGLLLVAQGDTLRAVATDGHRLAVSEADLE 184
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ I+PRKTV L+R L + E PV + + Q+ F + SK+IDG+F DY
Sbjct: 185 TPLGVEQECIVPRKTVQELRRNLLDDETPVAVGFAPGQVAFDFGVARLTSKVIDGRFPDY 244
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
+ VI + +V R ++L R++I++++K +GVRL+ P+ ++
Sbjct: 245 ERVIPVDLPGNLVVEREVFRQALARVAIVTSEKYRGVRLIAHPDGCRV 292
>gi|229843948|ref|ZP_04464089.1| DNA polymerase III subunit beta [Haemophilus influenzae 6P18H1]
gi|229812942|gb|EEP48630.1| DNA polymerase III subunit beta [Haemophilus influenzae 6P18H1]
Length = 366
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 181/306 (59%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ +++ TD EV++++ T
Sbjct: 1 MQFSISREN--LLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+KF+DI R+L + ++T+ E ++SG+S+FTL T A+EYP
Sbjct: 59 LSSSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRALVQSGRSRFTLTTQPAEEYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+T + + + +F L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHRL
Sbjct: 119 LT-DWQSEVDFQLPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
++++++ + S +I+PRK V L RLLE + P L+I N +++ N SKL
Sbjct: 178 AVCTISLEQELQNHS-VILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ K N L ++ R SI+SN++ + VRL +K N LKIT S+
Sbjct: 237 IDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITASN 296
Query: 301 SNREKA 306
+ E+A
Sbjct: 297 TEHEEA 302
>gi|319897496|ref|YP_004135693.1| DNA polymerase III subunit beta [Haemophilus influenzae F3031]
gi|317433002|emb|CBY81373.1| DNA polymerase III, beta subunit [Haemophilus influenzae F3031]
Length = 366
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 180/307 (58%), Gaps = 6/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ +++ TD EV++++ T
Sbjct: 1 MQFSISREN--LLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+KF+DI R+L + ++T+ E ++SG+S+FTL T A+EYP
Sbjct: 59 LSSSSENGTFTIPAKKFLDICRTLSDESEITVIFEQDRALVQSGRSRFTLATQPAEEYPN 118
Query: 121 MT-LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+T S+ DFE L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHR
Sbjct: 119 LTDWQSEVDFE--LPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHR 176
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L +++ ++ + S +I+PRK V L RLLE + P L+I N +++ N SK
Sbjct: 177 LAVCTISLGQELQNHS-VILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTSK 235
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG+F DY+ V+ K N L ++ R SI+SN++ + VRL +K N LKIT S
Sbjct: 236 LIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITAS 295
Query: 300 SSNREKA 306
++ E+A
Sbjct: 296 NTEHEEA 302
>gi|148828163|ref|YP_001292916.1| DNA polymerase III subunit beta [Haemophilus influenzae PittGG]
gi|148719405|gb|ABR00533.1| DNA polymerase III subunit beta [Haemophilus influenzae PittGG]
Length = 366
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 181/306 (59%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ +++ TD EV++++ T
Sbjct: 1 MQFSISREN--LLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+KF+DI R+L + ++T+ E ++SG+S+FTL T A+EYP
Sbjct: 59 LSSSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRALVQSGRSRFTLTTQPAEEYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+T + + + +F L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHRL
Sbjct: 119 LT-DWQSEVDFQLPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
++++++ + S +I+PRK V L RLLE + P L+I N +++ N SKL
Sbjct: 178 AVCTISLEQELQNHS-VILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ K N L ++ R SI+SN++ + VRL +K N LKIT S+
Sbjct: 237 IDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITASN 296
Query: 301 SNREKA 306
+ E+A
Sbjct: 297 TEHEEA 302
>gi|29653366|ref|NP_819058.1| DNA polymerase III subunit beta [Coxiella burnetii RSA 493]
gi|153209960|ref|ZP_01947547.1| DNA polymerase III, beta subunit [Coxiella burnetii 'MSU Goat
Q177']
gi|165924212|ref|ZP_02220044.1| DNA polymerase III, beta subunit [Coxiella burnetii Q321]
gi|212211671|ref|YP_002302607.1| DNA polymerase III, beta chain [Coxiella burnetii CbuG_Q212]
gi|212217690|ref|YP_002304477.1| DNA polymerase III, beta chain [Coxiella burnetii CbuK_Q154]
gi|29540628|gb|AAO89572.1| DNA polymerase III, beta chain [Coxiella burnetii RSA 493]
gi|120575206|gb|EAX31830.1| DNA polymerase III, beta subunit [Coxiella burnetii 'MSU Goat
Q177']
gi|165916346|gb|EDR34950.1| DNA polymerase III, beta subunit [Coxiella burnetii Q321]
gi|212010081|gb|ACJ17462.1| DNA polymerase III, beta chain [Coxiella burnetii CbuG_Q212]
gi|212011952|gb|ACJ19332.1| DNA polymerase III, beta chain [Coxiella burnetii CbuK_Q154]
Length = 369
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNS-S 67
+ +L PLQ+VI +VE+K LPILSN+L+ ++++S TD EV++ T + ++ S
Sbjct: 7 RETLLKPLQLVIGVVERKQTLPILSNVLLSIETDQLSITGTDLEVELIGQTKLDKNSTES 66
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ + RK +DI R+LP+ + +Y + + + ++SG+S+F L TL ++++P + +
Sbjct: 67 SRLTLPGRKLMDICRALPDNAPIELYRDKEKIILRSGRSRFMLSTLPSEDFPAVE-RRES 125
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
E L Q T + +L +F++AQQD+RYYLNGLLL + A+++DGHRL + +
Sbjct: 126 QLELALPQSTFRHLLYRTHFAMAQQDVRYYLNGLLLETYPNKLRAIATDGHRLAANTLLV 185
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
IIIPRK + L RLLE E ++I NN I + ++ SKLI+G+F D
Sbjct: 186 QTNTEHRLQIIIPRKGIIELLRLLEEDEALATIRIGNNHIGVSTNDFTFTSKLIEGRFPD 245
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ VI +K F+++R+ L ++L R +I+ N+K KGVR ++ L+I ++ +E A
Sbjct: 246 CERVIPKGGDKQFVIDRDILKQALSRTAILCNEKFKGVRFELRQGLLRILATNPEQEAA 304
>gi|145634168|ref|ZP_01789879.1| DNA polymerase III subunit beta [Haemophilus influenzae PittAA]
gi|145268612|gb|EDK08605.1| DNA polymerase III subunit beta [Haemophilus influenzae PittAA]
Length = 366
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 180/307 (58%), Gaps = 6/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ +++ TD EV++++ T
Sbjct: 1 MQFSISREN--LLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+KF+DI R+L + ++T+ E ++SG+S+FTL T A+EYP
Sbjct: 59 LSSSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRALVQSGRSRFTLTTQPAEEYPN 118
Query: 121 MT-LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+T S+ DFE L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHR
Sbjct: 119 LTDWQSEVDFE--LPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLRTVATDGHR 176
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L ++++++ + S +I+PRK V L RLLE + P L+I N +++ N SK
Sbjct: 177 LAVCTISLEQELQNHS-VILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTSK 235
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG+F DY+ V+ K N L ++ R SI+SN++ + VRL K N LKIT S
Sbjct: 236 LIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSFKENQLKITAS 295
Query: 300 SSNREKA 306
++ E+A
Sbjct: 296 NTEHEEA 302
>gi|344941650|ref|ZP_08780938.1| DNA polymerase III, beta subunit [Methylobacter tundripaludum SV96]
gi|344262842|gb|EGW23113.1| DNA polymerase III, beta subunit [Methylobacter tundripaludum SV96]
Length = 366
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 177/306 (57%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ ++N E+ IL PLQ ++S++EK+ +PILSN+L+ ++ TD E+QI
Sbjct: 1 MKFIINREE--ILVPLQQIVSVIEKRQTMPILSNVLMVIEENQLILTGTDLEIQIIAKIN 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ +I V ARKF+DI R LP ++ +++ + I S +S+F+L L A YP
Sbjct: 59 IATATPG-SITVPARKFLDICRLLPNGAEIKFELQDDKVKIASSRSRFSLSCLPADNYPE 117
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
S+ + ++ K L+ F +A QD+RYYLNGLLL+ + V+SDGHRL
Sbjct: 118 FA-ESELENHLFINAGKFKKALDKTVFCMANQDVRYYLNGLLLNVSNSKLKLVASDGHRL 176
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ Y+ N+D+ + II+PRK V L RLL++ E ++++ S+N I+I N+ +KL
Sbjct: 177 SIYEDNLDQATGFEARIILPRKGVLELNRLLDDPEAELKVEFSSNNIRIFIKNLIFSAKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
+D K+ D+ V ++ + + L +L R++I+SN+K KGV IKP+ LKI+ +
Sbjct: 237 VDSKYPDFGKVFQQEFFNQIHIQKQILKEALTRVAILSNEKFKGVTFDIKPDSLKISTHN 296
Query: 301 SNREKA 306
++A
Sbjct: 297 PEHDEA 302
>gi|444426995|ref|ZP_21222394.1| DNA polymerase III subunit beta [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444239762|gb|ELU51319.1| DNA polymerase III subunit beta [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 366
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 177/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ +S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEENVLSMTATDLEVELVSKVTLEGDFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V +RKF+DI R LP+ +T +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPSRKFLDICRGLPDDSIITFVLEGDRVQVRSGRSRFSLATLPANDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVEVSLTQSDLRTLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVSQTQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +L++ E PV L+I ++ ++ +N SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ ++L ++ R +I+SN+K +GVR+ + + ++IT ++ +E+A
Sbjct: 244 YRRVLPQSTNKTLETGCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITANNPEQEEA 302
>gi|424034659|ref|ZP_17774062.1| DNA polymerase III, beta subunit [Vibrio cholerae HENC-01]
gi|424042387|ref|ZP_17780118.1| DNA polymerase III, beta subunit [Vibrio cholerae HENC-02]
gi|408872320|gb|EKM11541.1| DNA polymerase III, beta subunit [Vibrio cholerae HENC-01]
gi|408889651|gb|EKM28010.1| DNA polymerase III, beta subunit [Vibrio cholerae HENC-02]
Length = 366
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 178/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ +S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELVSKVTLEGDFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V +RKF+DI R LP+ +T +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPSRKFLDICRGLPDDSIITFVLEGDRVQVRSGRSRFSLATLPANDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVEVSLTQSDLRTLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVSQTQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +L++ E PV L+I ++ ++ +N SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ + ++L ++ R +I+SN+K +GVR+ + + ++IT ++ +E+A
Sbjct: 244 YRRVLPQSTNKTLEASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITANNPEQEEA 302
>gi|156972778|ref|YP_001443685.1| DNA polymerase III subunit beta [Vibrio harveyi ATCC BAA-1116]
gi|156524372|gb|ABU69458.1| hypothetical protein VIBHAR_00443 [Vibrio harveyi ATCC BAA-1116]
Length = 366
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 177/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ +S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEENVLSMTATDLEVELVSKVTLEGDFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V +RKF+DI R LP+ +T +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPSRKFLDICRGLPDDSIITFVLEGDRVQVRSGRSRFSLATLPANDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVEVSLTQSDLRTLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVSQTQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +L++ E PV L+I ++ ++ +N SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ ++L ++ R +I+SN+K +GVR+ + + ++IT ++ +E+A
Sbjct: 244 YRRVLPQSTNKTLETGCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITANNPEQEEA 302
>gi|268628281|gb|ACZ13539.1| DNA polymerase III beta chain [Xenorhabdus poinarii]
gi|268628283|gb|ACZ13540.1| DNA polymerase III beta chain [Xenorhabdus poinarii]
gi|268628285|gb|ACZ13541.1| DNA polymerase III beta chain [Xenorhabdus poinarii]
Length = 276
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 91/235 (38%), Positives = 152/235 (64%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + K + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDGDRILVRSGRSRFSLSTLPASDFPNLD-DWKSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL +NI +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMNIGQNL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ ENP++L+I +N I+ ++ SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGENPLQLQIGSNNIRAHVNDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 197 LPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEA 251
>gi|410859656|ref|YP_006974890.1| DNA polymerase III subunit beta [Alteromonas macleodii AltDE1]
gi|410816918|gb|AFV83535.1| DNA polymerase III subunit beta [Alteromonas macleodii AltDE1]
Length = 366
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 102/306 (33%), Positives = 179/306 (58%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ ++ E+ L PLQ+V VE+++ LPILSN+L+ + + + TD EV++ +
Sbjct: 1 MKFTISREQ--FLQPLQLVSGAVERRHTLPILSNVLIKVSEDALWLTGTDLEVELISSVK 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + I V A+K DI+R + E + ++ I++G+ ++TL TL A +YP
Sbjct: 59 LEGEYTEGEITVPAKKLFDIIRGISEGTDIHFSLDGSKALIRAGRGRYTLSTLSANDYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + + EF LS LK +++ FS+AQQD+RYYLNG+ L ++ I V++DGHRL
Sbjct: 119 LE-DWEGEVEFELSCSDLKRLIDATSFSMAQQDVRYYLNGMSLETEENVIRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
++N + S +IIPRK V + RL+ + ++++I N ++I ++ SKL
Sbjct: 178 ALCRLNYETALPS-RQVIIPRKGVLEISRLISEDDKSLKVQIGANHLRIFSNDFIFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
+DG+F DY+ V+ +K + ++ L + R +I+SN+K +GVRL + LKIT ++
Sbjct: 237 VDGRFPDYRRVLPQNGDKEIIASKPVLKEAFSRAAILSNEKFRGVRLNLSSGELKITANN 296
Query: 301 SNREKA 306
+E+A
Sbjct: 297 PEQEEA 302
>gi|319940694|ref|ZP_08015036.1| hypothetical protein HMPREF9464_00255 [Sutterella wadsworthensis
3_1_45B]
gi|319805845|gb|EFW02612.1| hypothetical protein HMPREF9464_00255 [Sutterella wadsworthensis
3_1_45B]
Length = 372
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 185/308 (60%), Gaps = 5/308 (1%)
Query: 4 VVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGY 63
++++ A++ P++ V IVE+ LP++SNIL+ + ++F +TD ++QI T +VG
Sbjct: 3 LISSPVEALIKPVRSVAGIVERNQSLPVVSNILIEQKGVDVTFSTTDLDIQIRTSASVGV 62
Query: 64 GNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMF-IKSGKSKFTLQTLDAKEYPIMT 122
+I + A+KF +IL +L + + + I++ + + + F++QTL A+++P++
Sbjct: 63 EGCEGSITLNAQKFSEILGALRPLDTLDVDIDDGGLADLTTSGGHFSMQTLPAQDFPVLK 122
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ + FTL KTL+ +L M F++A +DIRY+L G+L + +IAV++D HRL Y
Sbjct: 123 I-MPWTTTFTLPAKTLRYLLTMTAFAMAPKDIRYFLMGVLFVVEGAKLIAVATDTHRLAY 181
Query: 183 YQVNIDKKFSSCS-DIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
+ ID + I+PRKTV L R+L + PV + + + QI F+ IE +SKLI
Sbjct: 182 CEAEIDGLNQETKIEAIVPRKTVRELLRILPEDDTPVTVNVGDTQIGFNFAGIEFVSKLI 241
Query: 242 DGKFLDYKYVIS--NKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
+GKF DY+ V+ + + +NR +LL +L+R+ I++N++ G+R + L + S
Sbjct: 242 EGKFPDYQRVMPTLDTNPQCVSINREELLLALRRVQILTNERFHGIRWLFTKGSLTVQGS 301
Query: 300 SSNREKAS 307
++ +E+AS
Sbjct: 302 NAEQEEAS 309
>gi|409204013|ref|ZP_11232213.1| DNA polymerase III subunit beta [Pseudoalteromonas flavipulchra
JG1]
Length = 367
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/306 (33%), Positives = 172/306 (56%), Gaps = 3/306 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ+ + E L PL V +E+K+ LPILSN+L+ + + TD E+++ A
Sbjct: 1 MQITIPRE--LFLKPLVQVSGAIERKHTLPILSNVLLEVKNGTLHMTGTDLEIELVASVA 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ I + A+K +DI +SLP+ + + + + + SG+S+F+L TL A+++P
Sbjct: 59 LETNVPDAKITLPAKKLLDICKSLPDNSDLVLSSQEHQLLLTSGQSRFSLTTLAAEDFPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + EF +++ L+ +L +FS+A QD+RYYLNG+ I V++DGHRL
Sbjct: 119 LE-EWNGEVEFAITRLELRKLLEATHFSMANQDVRYYLNGMSFEVDNNEIKTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
Q + + + +IIPRK V + RLL + + ++ N ++II S SKL
Sbjct: 178 AIAQQKLPESLQTQRQLIIPRKGVQEIMRLLPADDETITIQFGANHVRIIDSEFTFTSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
+DG+F DY+ V+ +K NR+ L + QR+SI+SN+K +GVRL + LKI+ ++
Sbjct: 238 VDGRFPDYRRVLPRGGDKLVTANRDWLRSAFQRVSILSNEKFRGVRLNLSNGQLKISANN 297
Query: 301 SNREKA 306
+E+A
Sbjct: 298 PEQEQA 303
>gi|88860615|ref|ZP_01135252.1| DNA polymerase III, beta-subunit [Pseudoalteromonas tunicata D2]
gi|88817210|gb|EAR27028.1| DNA polymerase III, beta-subunit [Pseudoalteromonas tunicata D2]
Length = 368
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 175/307 (57%), Gaps = 5/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ+ + ++ L PL V +E+K+ LPILSN+L+ K+ TD E+++
Sbjct: 2 MQITI--PRDQFLKPLIQVSGAIERKHTLPILSNVLLEIADGKLMMTGTDLEIELVACVT 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP- 119
+ + + + A+K +DI +SLP+ ++T+ ++ + + SGKS+F+L +L A ++P
Sbjct: 60 LSHFVEDSKLTLPAKKLLDICKSLPDGSEITLSAQDSQVLLTSGKSRFSLASLPALDFPN 119
Query: 120 IMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+ + + DF+ T ++ L+ +L +FS+A QD+RYYLNG+ I V++DGHR
Sbjct: 120 LEQWDGEVDFQITRNE--LRKLLESTHFSMANQDVRYYLNGMSFEVDNSEIKTVATDGHR 177
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L Q +D ++ +IIPRK V + RL+ + +N V ++ N +II SK
Sbjct: 178 LALSQKKLDYSLNTQRQLIIPRKGVQEIMRLMVSDDNLVTIQFGANHFRIIDQEFTFTSK 237
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
L+DG+F DY+ V+ +K NR L + R+SI+SN+K +GVRL LKIT +
Sbjct: 238 LVDGRFPDYRRVLPRGGDKVVTANREWLRSAFSRVSILSNEKFRGVRLNFSAGELKITAN 297
Query: 300 SSNREKA 306
+ +E+A
Sbjct: 298 NPEQEQA 304
>gi|37678196|ref|NP_932805.1| DNA polymerase III subunit beta [Vibrio vulnificus YJ016]
gi|37196935|dbj|BAC92776.1| DNA polymerase III, beta chain [Vibrio vulnificus YJ016]
Length = 366
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 178/298 (59%), Gaps = 2/298 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
++ + PLQ V + + LPIL N+L+ + ++S +TD EV++ + + +
Sbjct: 7 RSHFIKPLQQVSGALGGRPTLPILGNLLINVENGQLSMTATDLEVELISKVTLEGEFEAG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
+I V +RKF+DI R LP+ +T +E + ++SG+S+F+L TL A ++P + + + +
Sbjct: 67 SITVPSRKFLDICRGLPDDAVITFVLEGDRVQVRSGRSRFSLATLPANDFPNIE-DWQSE 125
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
E +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 126 VEVSLTQGELRALIEKTQFSMANQDVRYYLNGMLFEIDGSTLRSVATDGHRMAVAQAPLS 185
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
F+ II+PRK V L +LL+ E PV L+I ++ ++ ++ SKL+DG+F DY
Sbjct: 186 ADFAQ-KQIIVPRKGVQELVKLLDTPEQPVTLQIGSSNLRAEVNHFVFTSKLVDGRFPDY 244
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ V+ K+ + ++L ++ R +I+SN+K +GVR+ + + ++IT ++ +E+A
Sbjct: 245 RRVLPQHTTKTLEASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITANNPEQEEA 302
>gi|268628313|gb|ACZ13555.1| DNA polymerase III beta chain [Xenorhabdus indica]
gi|268628315|gb|ACZ13556.1| DNA polymerase III beta chain [Xenorhabdus indica]
Length = 276
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 155/244 (63%), Gaps = 3/244 (1%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
+ ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 IPARKFFDIWRGLPDGAEISVELDGDRILVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL +NI +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMNIGQSL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ +NP++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASS-TD 310
+ +K+ N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A D
Sbjct: 197 LPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEAEEIVD 256
Query: 311 LIYH 314
+ YH
Sbjct: 257 VNYH 260
>gi|388601708|ref|ZP_10160104.1| DNA polymerase III subunit beta [Vibrio campbellii DS40M4]
Length = 366
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 177/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ +S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEENVLSMTATDLEVELVSKVTLEGDFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V +RKF+DI R LP+ +T +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPSRKFLDICRGLPDDSIITFVLEGDRVQVRSGRSRFSLATLPANDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVEVSLTQSDLRTLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVSQTQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +L++ E PV L+I ++ ++ +N SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ ++L ++ R +I+SN+K +GVR+ + + ++IT ++ +E+A
Sbjct: 244 YRRVLPQSTNKTLETGCDELRQAFSRAAILSNEKFRGVRVNLTGSEMRITANNPEQEEA 302
>gi|386827324|ref|ZP_10114431.1| DNA polymerase III, beta subunit [Beggiatoa alba B18LD]
gi|386428208|gb|EIJ42036.1| DNA polymerase III, beta subunit [Beggiatoa alba B18LD]
Length = 377
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 111/296 (37%), Positives = 174/296 (58%), Gaps = 9/296 (3%)
Query: 12 ILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSIN-- 69
+++PL+MV VE + LPIL N LV + + +TD E++I+ + + +
Sbjct: 10 LINPLKMVNGAVEPRQTLPILGNTLVEVKGQTLHLTATDAEIEISCCIPLEAESDVVEGR 69
Query: 70 IIVAARKFIDILRSLPETEKVTIYIE-NKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
+ ARKF+DI RSL + + I E + IKSG+S+FTL TL+A E+P ++ + + +
Sbjct: 70 TTIPARKFLDICRSLGDNSLIEIQAEPDNRAVIKSGRSRFTLSTLNADEFPTLSADKQSE 129
Query: 129 ----FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQ 184
F F ++Q+TL+ +L FS+AQQD+RYYLNGLL + V++DGHRL +
Sbjct: 130 TTLRFTFEIAQRTLRDLLAQTQFSMAQQDVRYYLNGLLFDLTPGELAVVATDGHRLAMAK 189
Query: 185 VNIDKKFSSCSDIIIPRKTVFTLQRLL-ENKENPVELKISNNQIKIIFSNIEII-SKLID 242
+ + + + +IIPRK V L R+L +N + + + + N IK F++ ++ SKLID
Sbjct: 190 ESFNLEGVEPTQVIIPRKAVNELARMLGDNADTQITVSVYENYIKFAFADRLVLSSKLID 249
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
G+F DY+ VI +K L + + L ++L R SI+SN+K KGVRL P L IT
Sbjct: 250 GRFPDYRGVIPAYPDKFMLAHCDLLKQALSRASILSNEKYKGVRLSFNPQRLIITA 305
>gi|392543436|ref|ZP_10290573.1| DNA polymerase III subunit beta [Pseudoalteromonas piscicida JCM
20779]
Length = 367
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 173/308 (56%), Gaps = 7/308 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ+ + E L PL V +E+K+ LPILSN+L+ + + TD E+++ A
Sbjct: 1 MQITIPRE--LFLKPLVQVSGAIERKHTLPILSNVLLEVKNGALHMTGTDLEIELVASVA 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ I + A+K +DI +SLP+ + + + + + SG+S+F+L TL A+++P
Sbjct: 59 LETNVPDAKITLPAKKLLDICKSLPDNSDLVLSSQEHQLLLTSGQSRFSLTTLAAEDFPN 118
Query: 121 MTLNSKYD--FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGH 178
+ ++D EF +++ L+ +L +FS+A QD+RYYLNG+ I V++DGH
Sbjct: 119 L---EEWDGEVEFAITRLELRKLLEATHFSMANQDVRYYLNGMSFEVDNNEIKTVATDGH 175
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL Q + + + +IIPRK V + RLL + + ++ N ++II S S
Sbjct: 176 RLAIAQQKLPESLQTQRQLIIPRKGVQEIMRLLPADDETITIQFGANHVRIIDSEFTFTS 235
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KL+DG+F DY+ V+ +K NR L + QR+SI+SN+K +GVRL + LKI+
Sbjct: 236 KLVDGRFPDYRRVLPRGGDKLVTANREWLRSAFQRVSILSNEKFRGVRLNLSNGQLKISA 295
Query: 299 SSSNREKA 306
++ +E+A
Sbjct: 296 NNPEQEQA 303
>gi|52424541|ref|YP_087678.1| DNA polymerase III subunit beta [Mannheimia succiniciproducens
MBEL55E]
gi|52306593|gb|AAU37093.1| DnaN protein [Mannheimia succiniciproducens MBEL55E]
Length = 370
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 179/306 (58%), Gaps = 5/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ +V+ ++ +L PLQ V ++ + +P+L+N+L+ + ++ TD EV+++T
Sbjct: 6 MQFIVS--RDNLLKPLQQVCGVLSSRPNIPVLNNVLLQIADDCLTITGTDLEVELSTQAK 63
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ G + A+KF+DI RSLP+ ++ + E + ++S ++KF L TL A+EYP
Sbjct: 64 LISGTEG-KFTIPAKKFLDICRSLPDEAEIHVTFEEERAIVRSARTKFNLATLPAEEYPN 122
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + + +FT Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHRL
Sbjct: 123 LA-DWQSEVDFTTEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRL 181
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ +++ + S +I+PRK V L RLLE + P L+I N +++ +N+ SKL
Sbjct: 182 AVCTIALEQDLQNHS-VIVPRKGVLELARLLEATDAPARLQIGTNNLRVQLANVVFTSKL 240
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ + + + L ++ R +I+S ++ + VRL + N +KIT ++
Sbjct: 241 IDGRFPDYRRVLPRNADHILEADWDVLKQAFVRAAILSTERFRSVRLQLDQNQMKITATN 300
Query: 301 SNREKA 306
+E+A
Sbjct: 301 PEQEEA 306
>gi|332139412|ref|YP_004425150.1| DNA polymerase III subunit beta [Alteromonas macleodii str. 'Deep
ecotype']
gi|406595003|ref|YP_006746133.1| DNA polymerase III subunit beta [Alteromonas macleodii ATCC 27126]
gi|407685800|ref|YP_006800973.1| DNA polymerase III subunit beta [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407698264|ref|YP_006823051.1| DNA polymerase III subunit beta [Alteromonas macleodii str. 'Black
Sea 11']
gi|327549434|gb|AEA96152.1| DNA polymerase III subunit beta [Alteromonas macleodii str. 'Deep
ecotype']
gi|406372324|gb|AFS35579.1| DNA polymerase III subunit beta [Alteromonas macleodii ATCC 27126]
gi|407247411|gb|AFT76596.1| DNA polymerase III subunit beta [Alteromonas macleodii str. 'Black
Sea 11']
gi|407289180|gb|AFT93492.1| DNA polymerase III subunit beta [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 366
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 102/306 (33%), Positives = 179/306 (58%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ ++ E+ L PLQ+V VE+++ LPILSN+L+ + + + TD EV++ +
Sbjct: 1 MKFTISREQ--FLQPLQLVSGAVERRHTLPILSNVLIKVSEDALWLTGTDLEVELISSVK 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + I V A+K DI+R + E + ++ I++G+ ++TL TL A +YP
Sbjct: 59 LEGEFTEGEITVPAKKLFDIIRGISEGTDIHFSLDGSKALIRAGRGRYTLSTLSANDYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + + EF LS LK +++ FS+AQQD+RYYLNG+ L ++ I V++DGHRL
Sbjct: 119 LE-DWEGEVEFELSCSDLKRLIDATSFSMAQQDVRYYLNGMSLETEENIIRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
++N + S +IIPRK V + RL+ + ++++I N ++I ++ SKL
Sbjct: 178 ALCRLNYETALPS-RQVIIPRKGVLEISRLISEDDKSLKVQIGANHLRIFSNDFIFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
+DG+F DY+ V+ +K + ++ L + R +I+SN+K +GVRL + LKIT ++
Sbjct: 237 VDGRFPDYRRVLPQNGDKEIIASKAVLKEAFSRAAILSNEKFRGVRLNLSSGELKITANN 296
Query: 301 SNREKA 306
+E+A
Sbjct: 297 PEQEEA 302
>gi|407681911|ref|YP_006797085.1| DNA polymerase III subunit beta [Alteromonas macleodii str.
'English Channel 673']
gi|407243522|gb|AFT72708.1| DNA polymerase III subunit beta [Alteromonas macleodii str.
'English Channel 673']
Length = 366
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 102/306 (33%), Positives = 179/306 (58%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ ++ E+ L PLQ+V VE+++ LPILSN+L+ + + + TD EV++ +
Sbjct: 1 MKFTISREQ--FLQPLQLVSGAVERRHTLPILSNVLIKVSEDALWLTGTDLEVELISSVK 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + I V A+K DI+R + E + ++ I++G+ ++TL TL A +YP
Sbjct: 59 LEGEFTEGEITVPAKKLFDIIRGISEGTDIHFSLDGSKALIRAGRGRYTLSTLSANDYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + + + EF LS LK +++ FS+AQQD+RYYLNG+ L ++ I V++DGHRL
Sbjct: 119 LE-DWEGEVEFELSCSDLKRLIDATSFSMAQQDVRYYLNGMSLETEENIIRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
++N + S +IIPRK V + RL+ + ++++I N ++I ++ SKL
Sbjct: 178 ALCRLNYETTLPS-RQVIIPRKGVLEISRLISEDDKSLKVQIGANHLRIFSNDFIFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
+DG+F DY+ V+ +K + ++ L + R +I+SN+K +GVRL + LKIT ++
Sbjct: 237 VDGRFPDYRRVLPQNGDKEIIASKAVLKEAFSRAAILSNEKFRGVRLNLSSGELKITANN 296
Query: 301 SNREKA 306
+E+A
Sbjct: 297 PEQEEA 302
>gi|148826360|ref|YP_001291113.1| DNA polymerase III subunit beta [Haemophilus influenzae PittEE]
gi|148716520|gb|ABQ98730.1| DNA polymerase III subunit beta [Haemophilus influenzae PittEE]
Length = 366
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 107/307 (34%), Positives = 181/307 (58%), Gaps = 6/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ +++ TD EV++++ T
Sbjct: 1 MQFSISREN--LLKPLQQVCGVLSHRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+KF+DI R+L + ++T+ E ++SG+S+FTL T A+EYP
Sbjct: 59 LSSSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRALVQSGRSRFTLATQPAEEYPN 118
Query: 121 MT-LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+T S+ DFE L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHR
Sbjct: 119 LTDWQSEVDFE--LPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHR 176
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L ++++++ + S +I+PRK V L RLLE + P L+I N +++ N SK
Sbjct: 177 LAVCTISLEQELQNHS-VILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTSK 235
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG+F DY+ V+ K + L ++ R SI+SN++ + VRL +K N LKIT S
Sbjct: 236 LIDGRFPDYRRVLPRNATKIVEGSWEMLKQAFIRASILSNERARSVRLSLKENQLKITAS 295
Query: 300 SSNREKA 306
++ E+A
Sbjct: 296 NTEHEEA 302
>gi|269103821|ref|ZP_06156518.1| DNA polymerase III beta subunit [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268163719|gb|EEZ42215.1| DNA polymerase III beta subunit [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 365
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 173/298 (58%), Gaps = 3/298 (1%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ +L PLQ V + + + LPIL NIL+ +S TD EV++ + +
Sbjct: 7 REQLLKPLQQVSGALGRPS-LPILGNILLQVEEGLLSLTGTDLEVELVAKIVLEGEFEAG 65
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
I V +RKF+DI R LP++ +++ +E I+SG+S+++L TL A ++P + + + +
Sbjct: 66 AITVPSRKFLDICRGLPDSATISVSVEGDRALIRSGRSRYSLATLPASDFPNID-DWQSE 124
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
EF L Q L+ +++ FS+A QD+RYYLNG+L K + V++DGHR+ ++
Sbjct: 125 VEFELEQSRLRQLIDSTQFSMAHQDVRYYLNGMLFETDGKLLRTVATDGHRMAVCAIDTA 184
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
S II+PRK V L RLL+N E PV+++I + ++ +N SKL+DG+F DY
Sbjct: 185 YDVPS-KQIILPRKGVLELVRLLDNPEAPVQIQIGGSNLRATVNNFVFTSKLVDGRFPDY 243
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ V+ K + ++L ++ R +I+SN+K +GVR+ + ++IT ++ +E+A
Sbjct: 244 RRVLPQNSNKFVTASCDELRKAFSRAAILSNEKFRGVRVNLAAGEMRITANNPEQEEA 301
>gi|419839642|ref|ZP_14363048.1| DNA polymerase III, beta subunit [Haemophilus haemolyticus HK386]
gi|386909220|gb|EIJ73896.1| DNA polymerase III, beta subunit [Haemophilus haemolyticus HK386]
Length = 366
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 182/307 (59%), Gaps = 6/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ +++ TD EV++++ T
Sbjct: 1 MQFSISREN--LLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+KF+DI R+L + ++T+ E ++SG+S+FTL T A+EYP
Sbjct: 59 LSSSSGNGTFTIPAKKFLDICRTLSDDSEITVTFEEDRALVQSGRSRFTLTTQPAEEYPN 118
Query: 121 MT-LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+T S+ DFE L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHR
Sbjct: 119 LTDWQSEVDFE--LPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHR 176
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L ++++++ + S +I+PRK V L RLLE + P L+I N ++I NI SK
Sbjct: 177 LAVCTISLEQELQNHS-VILPRKGVLELVRLLETSDEPARLQIGTNNLRIHLKNIVFTSK 235
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG+F DY+ V+ K + L ++ R SI+SN++++ VRL + N LKIT S
Sbjct: 236 LIDGRFPDYRRVLPRNATKIVEGSWEILKQAFVRASILSNERVRSVRLNLSENQLKITAS 295
Query: 300 SSNREKA 306
++ E+A
Sbjct: 296 NTEHEEA 302
>gi|145628066|ref|ZP_01783867.1| DNA polymerase III subunit beta [Haemophilus influenzae 22.1-21]
gi|144979841|gb|EDJ89500.1| DNA polymerase III subunit beta [Haemophilus influenzae 22.1-21]
Length = 366
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 107/307 (34%), Positives = 181/307 (58%), Gaps = 6/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ +++ TD EV++++ T
Sbjct: 1 MQFSISREN--LLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+KF+DI R+L + ++T+ E ++SG+S+FTL T A+EYP
Sbjct: 59 LSSSSENGTFTIPAKKFLDICRTLSDESEITVTFEQDRALVQSGRSRFTLATQPAEEYPN 118
Query: 121 MT-LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+T S+ DFE L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHR
Sbjct: 119 LTDWQSEVDFE--LPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHR 176
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L ++++++ + S +I+PRK V L RLLE + P L+I N +++ N SK
Sbjct: 177 LAVCTISLEQELQNHS-VILPRKGVLELVRLLETSDEPARLQIGTNNLRVHLKNTVFTSK 235
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG+F DY+ V+ K + L ++ R SI+SN++ + VRL +K N LKIT S
Sbjct: 236 LIDGRFPDYRRVLPRNATKIVEGSWEMLKQAFIRASILSNERARSVRLSLKENQLKITAS 295
Query: 300 SSNREKA 306
++ E+A
Sbjct: 296 NTEHEEA 302
>gi|87121028|ref|ZP_01076920.1| DNA polymerase III, beta chain [Marinomonas sp. MED121]
gi|86163866|gb|EAQ65139.1| DNA polymerase III, beta chain [Marinomonas sp. MED121]
Length = 365
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 180/310 (58%), Gaps = 11/310 (3%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ +L PLQ+V +VE+K +P+L+N+L+ +++ +D EV++ + +
Sbjct: 7 RETLLKPLQLVAGVVERKQTMPVLANVLLEVKDNELTLTGSDLEVELVGHIQLDECQEG- 65
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
I V ARK +DI +SLP++ + + +++ I+SG+S+FTL TL A E+P + + + D
Sbjct: 66 RITVPARKLMDICKSLPDSAVIELSVDDTRAIIRSGRSRFTLSTLPADEFPNIQ-DMQGD 124
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY----Q 184
++Q +++ ++ F++A QD+RYYLNG+L + VS+DGHRL Q
Sbjct: 125 LSVVVAQNSVRRLIERTGFAMANQDVRYYLNGMLFEVADGQLRVVSTDGHRLATAIEDAQ 184
Query: 185 VNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGK 244
V+ D + +I+PRK V L RLL + + VEL+I N I+ ++ SKL++GK
Sbjct: 185 VSGD-----LTQVIVPRKGVLELNRLLSDTDETVELQIGANHIRAKVADYIFTSKLVEGK 239
Query: 245 FLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNRE 304
F DY VI +K + +R +L + R SI+SN+K +GVRL++ L++ ++ +E
Sbjct: 240 FPDYHRVIPRNNDKIVIADRLELRQVFLRASILSNEKYRGVRLILTNGMLQVFANNPEQE 299
Query: 305 KASSTDLIYH 314
+A + L+ +
Sbjct: 300 EAEESVLVQY 309
>gi|417844591|ref|ZP_12490632.1| DNA polymerase III subunit beta [Haemophilus haemolyticus M21639]
gi|341956550|gb|EGT82971.1| DNA polymerase III subunit beta [Haemophilus haemolyticus M21639]
Length = 366
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 182/307 (59%), Gaps = 6/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ +++ TD EV++++ T
Sbjct: 1 MQFSISREN--LLKPLQQVCGVLSSRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+KF+DI R+L + ++T+ E ++SG+S+FTL T A+EYP
Sbjct: 59 LSSSSENGTFTIPAKKFLDICRTLSDDSEITVTFEEDRALVQSGRSRFTLTTQPAEEYPN 118
Query: 121 MT-LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+T S+ DFE L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHR
Sbjct: 119 LTDWQSEVDFE--LPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHR 176
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L ++++++ + S +I+PRK V L RLLE + P L+I N ++I NI SK
Sbjct: 177 LAVCTISLEQELQNHS-VILPRKGVLELVRLLETSDEPARLQIGTNNLRIHLKNIVFTSK 235
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG+F DY+ V+ K + L ++ R SI+SN++++ VRL + N LKIT S
Sbjct: 236 LIDGRFPDYRRVLPRNTTKIVEGSWEILKQAFVRASILSNERVRSVRLNLSENQLKITAS 295
Query: 300 SSNREKA 306
++ E+A
Sbjct: 296 NTEHEEA 302
>gi|260581929|ref|ZP_05849725.1| DNA polymerase III, beta subunit [Haemophilus influenzae NT127]
gi|260095122|gb|EEW79014.1| DNA polymerase III, beta subunit [Haemophilus influenzae NT127]
Length = 366
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/307 (34%), Positives = 181/307 (58%), Gaps = 6/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ +++ TD EV++++ T
Sbjct: 1 MQFSISREN--LLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+KF+DI R+L + ++T+ E ++SG+S+FTL T A+EYP
Sbjct: 59 LSSSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRALVQSGRSRFTLTTQPAEEYPN 118
Query: 121 MT-LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+T S+ DFE L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHR
Sbjct: 119 LTDWQSEVDFE--LPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLRTVATDGHR 176
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L ++++++ + S +I+PRK V L RLLE + P L+I N +++ N SK
Sbjct: 177 LAVCTISLEQELQNHS-VILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTSK 235
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG+F DY+ V+ K + L ++ R SI+SN++ + VRL +K N LKIT S
Sbjct: 236 LIDGRFPDYRRVLPRNATKIVEGSWEMLKQAFVRASILSNERARSVRLSLKENQLKITAS 295
Query: 300 SSNREKA 306
++ E+A
Sbjct: 296 NTEHEEA 302
>gi|90581123|ref|ZP_01236922.1| DNA polymerase III subunit beta [Photobacterium angustum S14]
gi|90437644|gb|EAS62836.1| DNA polymerase III subunit beta [Vibrio angustum S14]
Length = 366
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 172/299 (57%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + + LPIL NIL+ +S TD EV++ A+ S
Sbjct: 6 EREYLLKPLQQVAAALGGRPSLPILGNILLKVEDGCLSMTGTDLEVELIAKVALEGDYES 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ V +RKF+DI R LP +++ E + I+S +S++TL TL A ++P + + +
Sbjct: 66 GTVTVPSRKFLDICRGLPSNATISVSYEGDRVLIRSSRSRYTLTTLPAADFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q ++ +++ FS+A QD+RYYLNG+L +++ +V++DGHR+ ++
Sbjct: 125 EVEFTLEQGRMRQLIDSTQFSMANQDVRYYLNGMLFETDGQHLRSVATDGHRMAVCAIDT 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + II+PRK V L RL +N E+ V ++I N+ I+ +N SKL+DG+F D
Sbjct: 185 GHELPT-KQIIVPRKGVLELVRLFDNPESLVNIQIGNSNIRATVNNFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K ++ + R +I+SN+K +GVR+ + ++IT ++ +E+A
Sbjct: 244 YRRVMPQNSTKFVEAGCEEMRNAFARAAILSNEKFRGVRVNLSNGEMRITANNPEQEEA 302
>gi|342903749|ref|ZP_08725555.1| DNA polymerase III subunit beta [Haemophilus haemolyticus M21621]
gi|341954576|gb|EGT81052.1| DNA polymerase III subunit beta [Haemophilus haemolyticus M21621]
Length = 366
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 182/307 (59%), Gaps = 6/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ +++ TD EV++++ T
Sbjct: 1 MQFSISREN--LLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+KF+DI R+L + ++T+ E ++SG+S+FTL T A+EYP
Sbjct: 59 LSSSSENGTFTIPAKKFLDICRTLSDDSEITVTFEEDRALVQSGRSRFTLTTQPAEEYPN 118
Query: 121 MT-LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+T S+ DFE L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHR
Sbjct: 119 LTDWQSEVDFE--LPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHR 176
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L ++++++ + S +I+PRK V L RLLE + P L+I N ++I NI SK
Sbjct: 177 LAVCTISLEQELQNHS-VILPRKGVLELVRLLETSDEPARLQIGTNNLRIHLKNIVFTSK 235
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG+F DY+ V+ K + L ++ R SI+SN++++ VRL + N LKIT S
Sbjct: 236 LIDGRFPDYRRVLPRNATKIVEGSWEILKQAFVRASILSNERVRSVRLNLSENQLKITAS 295
Query: 300 SSNREKA 306
++ E+A
Sbjct: 296 NTEHEEA 302
>gi|268628327|gb|ACZ13562.1| DNA polymerase III beta chain [Xenorhabdus stockiae]
Length = 276
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 152/235 (64%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
+ ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 IPARKFFDIWRGLPDGAEISVELDGDRILVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL +NI +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMNIGQSL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ +NP++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ + N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 197 LPKNPDKTLIANCDTLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEA 251
>gi|373466589|ref|ZP_09557903.1| DNA polymerase III, beta subunit [Haemophilus sp. oral taxon 851
str. F0397]
gi|371760371|gb|EHO49060.1| DNA polymerase III, beta subunit [Haemophilus sp. oral taxon 851
str. F0397]
Length = 366
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 182/307 (59%), Gaps = 6/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ +++ TD EV++++ T
Sbjct: 1 MQFSISREN--LLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+KF+DI R+L + ++T+ E ++SG+S+FTL T A+EYP
Sbjct: 59 LSSSSENGTFTIPAKKFLDICRTLSDDSEITVTFEEDRALVQSGRSRFTLTTQPAEEYPN 118
Query: 121 MT-LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+T S+ DFE L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHR
Sbjct: 119 LTDWQSEVDFE--LPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHR 176
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L ++++++ + S +I+PRK V L RLLE + P L+I N ++I NI SK
Sbjct: 177 LAVCTISLEQELQNHS-VILPRKGVLELVRLLETSDEPARLQIGTNNLRIHLKNIVFTSK 235
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG+F DY+ V+ K + L ++ R SI+SN++++ VRL + N LKIT S
Sbjct: 236 LIDGRFPDYRRVLPRNATKIVEGSWEILKQAFVRASILSNERVRSVRLNLSENQLKITAS 295
Query: 300 SSNREKA 306
++ E+A
Sbjct: 296 NTEHEEA 302
>gi|417841462|ref|ZP_12487566.1| DNA polymerase III subunit beta [Haemophilus haemolyticus M19501]
gi|341949500|gb|EGT76104.1| DNA polymerase III subunit beta [Haemophilus haemolyticus M19501]
Length = 366
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 182/307 (59%), Gaps = 6/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ +++ TD EV++++ T
Sbjct: 1 MQFSISREN--LLKPLQQVCGVLSSRPNIPVLNNVLLQIEDNQLTITGTDLEVELSSQTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+KF+DI R+L + ++T+ E ++SG+S+FTL T A+EYP
Sbjct: 59 LSSSSENGTFTIPAKKFLDICRTLSDDSEITVTFEEDRALVQSGRSRFTLTTQPAEEYPN 118
Query: 121 MT-LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+T S+ DFE L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHR
Sbjct: 119 LTDWQSEVDFE--LPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHR 176
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L ++++++ + S +I+PRK V L RLLE + P L+I N ++I NI SK
Sbjct: 177 LAVCTISLEQELQNHS-VILPRKGVLELVRLLETSDEPARLQIGTNNLRIHLKNIVFTSK 235
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG+F DY+ V+ K + L ++ R SI+SN++++ VRL + N LKIT S
Sbjct: 236 LIDGRFPDYRRVLPRNATKIVEGSWEILKQAFVRASILSNERVRSVRLNLSENQLKITAS 295
Query: 300 SSNREKA 306
++ E+A
Sbjct: 296 NTEHEEA 302
>gi|343493262|ref|ZP_08731590.1| DNA polymerase III subunit beta [Vibrio nigripulchritudo ATCC
27043]
gi|342826349|gb|EGU60782.1| DNA polymerase III subunit beta [Vibrio nigripulchritudo ATCC
27043]
Length = 366
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 176/300 (58%), Gaps = 4/300 (1%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ + +++ +TD EV++ A+ +
Sbjct: 6 ERSHLIKPLQQVSGALGGRPTLPILGNLLLKVENGQLAMTATDLEVELVANVALEGEFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP-IMTLNSK 126
+ V +RKF+DI R LP++ +T+ +E + ++SG+S+F+L TL A ++P I S+
Sbjct: 66 GSTTVPSRKFLDICRGLPDSAIITVVMEADRVQVRSGRSRFSLSTLPASDFPNIEDWQSE 125
Query: 127 YDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVN 186
D TLSQ+ L+ ++ FS+A QD+RYYLNG+L + + +V++DGHR+ Q
Sbjct: 126 AD--ITLSQQELRSLIEKTQFSMANQDVRYYLNGMLFEIEGTTLRSVATDGHRMAVSQTQ 183
Query: 187 IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFL 246
+ + + II+PRK V L +LL+ E V L+I + ++ +N SKL+DG+F
Sbjct: 184 LASELPN-QQIILPRKGVQELVKLLDAPEAEVTLQIGSANLRAAVNNFTFTSKLVDGRFP 242
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
DY+ V+ K+ +L + R +I+SN+K +GVR+ N ++IT ++ +E+A
Sbjct: 243 DYRRVMPQSSNKTLEAPCEELKSAFSRAAILSNEKFRGVRVNFNGNEMRITANNPEQEEA 302
>gi|304309654|ref|YP_003809252.1| DNA polymerase sliding clamp subunit [gamma proteobacterium HdN1]
gi|301795387|emb|CBL43585.1| DNA polymerase sliding clamp subunit (PcnA homolog) [gamma
proteobacterium HdN1]
Length = 367
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 175/301 (58%), Gaps = 1/301 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ IL PLQ + +VE++ PIL+NIL+ + ++ TDTEV++ +G
Sbjct: 7 REGILKPLQQLAGLVERRQTKPILANILLVLDGNALTLTGTDTEVELRARIQLGEEYPFG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
+ A+K +DI +SLPE ++ I +++ ++SG+SKF+L L ++P + + +++
Sbjct: 67 RATLPAKKLLDICKSLPEGAELLIEADDQKALLRSGRSKFSLVALPPDDFPDLE-DGQFE 125
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
+F++ Q+ L+ ++ F++AQQD+R+YLNG+LL + N+ AV++DGHRL +I
Sbjct: 126 VQFSIQQRYLRELIEKTGFAMAQQDVRFYLNGMLLEVSENNLRAVATDGHRLALGDRDIL 185
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ + ++PRK + + +L + + + + +S N ++ +++ SKL+D K+ +Y
Sbjct: 186 WQGAGIRQAVVPRKGILEIPKLFGSDDGELLISLSGNHLRAETADLRFTSKLLDAKYPEY 245
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASS 308
V+ E+ + +R+ L + L R+ I+SN+K +GVRL + L S+ +E+A
Sbjct: 246 GRVLPKPGERYIVADRDALRQCLLRVGILSNEKFRGVRLTFQCGVLVARASNPEQEEAEE 305
Query: 309 T 309
+
Sbjct: 306 S 306
>gi|386266272|ref|YP_005829764.1| DNA polymerase III subunit beta [Haemophilus influenzae R2846]
gi|309973508|gb|ADO96709.1| DNA polymerase III beta subunit [Haemophilus influenzae R2846]
Length = 366
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 181/306 (59%), Gaps = 4/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ +++ TD EV++++ T
Sbjct: 1 MQFSISREN--LLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+KF+DI R+L + ++T+ E ++SG+S+FTL T A+EYP
Sbjct: 59 LSSSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRALVQSGRSRFTLTTQPAEEYPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+T + + + +F L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHRL
Sbjct: 119 LT-DWQSEVDFQLPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
++++++ + S +I+PRK V L RLLE + P L+I N +++ N SKL
Sbjct: 178 AVCTISLEQELQNHS-VILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ K + L ++ R SI+SN++ + VRL +K N LKIT S+
Sbjct: 237 IDGRFPDYRRVLPRNATKIVEGSWEMLKQAFVRASILSNERARSVRLSLKENQLKITASN 296
Query: 301 SNREKA 306
+ E+A
Sbjct: 297 TEHEEA 302
>gi|268628287|gb|ACZ13542.1| DNA polymerase III beta chain [Xenorhabdus koppenhoeferi]
Length = 276
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 151/235 (64%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDGDRILVRSGRSRFSLSTLPASDFPNLD-HWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL +NI +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMNIGQNL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ +NP++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ N + L ++ R +I+SN+K +GVR+ + N LKIT ++ +E+A
Sbjct: 197 LPKNPDKTLEANCDTLKQAFSRAAILSNEKFRGVRIYLSENQLKITANNPEQEEA 251
>gi|268628279|gb|ACZ13538.1| DNA polymerase III beta chain [Xenorhabdus japonica]
Length = 276
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 152/235 (64%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ K+++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAKISVELDGDRILVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL ++I +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMSIGQNL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ +NP++L+I +N I+ + SKL+DG+F DY++V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRHV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 197 LPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEA 251
>gi|350560106|ref|ZP_08928946.1| DNA polymerase III, beta subunit [Thioalkalivibrio thiocyanoxidans
ARh 4]
gi|349782374|gb|EGZ36657.1| DNA polymerase III, beta subunit [Thioalkalivibrio thiocyanoxidans
ARh 4]
Length = 366
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 161/288 (55%), Gaps = 2/288 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
++++ LQ ++ EK+ +PIL N+ + SE I +TD E+ + G + I
Sbjct: 7 RDSMAETLQRIVGAAEKRLTMPILGNVRIRAGSEGIQLDTTDLELAWRARS-TGEISPEI 65
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
+ VA +K +D++R+ P + +E + + + G S+F+L TL ++P L +
Sbjct: 66 DTTVAVKKLLDVVRAAPPDSTLRARVEGERLTVGFGASRFSLATLPGADFPEWELE-LIE 124
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
+ Q+ L+ ++ FS+AQQD+RYYL GLLL Q + AV++DGHRL + ++
Sbjct: 125 HWIEMPQRLLRRLIETTMFSMAQQDVRYYLQGLLLVAQGAMLRAVATDGHRLAVSETELE 184
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ + I+PRKTV L+R L + E PV + Q+ F + SK+IDG+F DY
Sbjct: 185 TPLGADQECIVPRKTVQELRRNLLDDETPVAVGFGPGQVAFDFGTARLTSKVIDGRFPDY 244
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
+ VI + +V R L ++L R++I++N+K +GVRL++ P+ ++
Sbjct: 245 ERVIPVDLPGTLIVEREALRQALGRVAIVTNEKYRGVRLIVHPDGCRV 292
>gi|268628293|gb|ACZ13545.1| DNA polymerase III beta chain [Xenorhabdus beddingii]
Length = 276
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 151/235 (64%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDGDRILVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL +NI +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMNIGQTL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ +NP++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 197 LPKNPDKTLEANCDTLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEA 251
>gi|213052697|ref|ZP_03345575.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
Length = 274
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 153/271 (56%), Gaps = 2/271 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ + +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLSQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELRTVATDGHRLAVCSMPL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ ENP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 EASLPSHS-VIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIIS 278
Y+ V+ +K + L ++ R +I+S
Sbjct: 244 YRRVLPKNPDKHLEAGCDILKQAFARAAILS 274
>gi|417839563|ref|ZP_12485739.1| DNA polymerase III subunit beta [Haemophilus haemolyticus M19107]
gi|417840416|ref|ZP_12486551.1| DNA polymerase III subunit beta [Haemophilus haemolyticus M19107]
gi|341948476|gb|EGT75105.1| DNA polymerase III subunit beta [Haemophilus haemolyticus M19107]
gi|341952310|gb|EGT78841.1| DNA polymerase III subunit beta [Haemophilus haemolyticus M19107]
Length = 366
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 181/307 (58%), Gaps = 6/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L N+L+ +++ TD EV++++ T
Sbjct: 1 MQFSISREN--LLKPLQQVCGVLSSRPNIPVLHNVLLQIKDNRLTITGTDLEVELSSQTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+KF+DI R+L + ++T+ E ++SG+S+FTL T A+EYP
Sbjct: 59 LSSSSENGTFTIPAKKFLDICRTLSDDSEITVTFEEDRALVQSGRSRFTLTTQPAEEYPN 118
Query: 121 MT-LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+T S+ DFE L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHR
Sbjct: 119 LTDWQSEVDFE--LPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHR 176
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L ++++++ + S +I+PRK V L RLLE + P L+I N ++I NI SK
Sbjct: 177 LAVCTISLEQELQNHS-VILPRKGVLELVRLLETSDEPARLQIGTNNLRIHLKNIVFTSK 235
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG+F DY+ V+ K + L ++ R SI+SN++++ VRL + N LKIT S
Sbjct: 236 LIDGRFPDYRRVLPRNATKIVEGSWEILKQAFVRASILSNERVRSVRLNLSENQLKITAS 295
Query: 300 SSNREKA 306
++ E+A
Sbjct: 296 NTEHEEA 302
>gi|386390125|ref|ZP_10074921.1| DNA polymerase III, beta subunit [Haemophilus paraphrohaemolyticus
HK411]
gi|385693809|gb|EIG24441.1| DNA polymerase III, beta subunit [Haemophilus paraphrohaemolyticus
HK411]
Length = 367
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 175/300 (58%), Gaps = 5/300 (1%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG-NSS 67
+ +L PLQ V ++ + LPI++NIL+ +++S TD EV+++T + + S
Sbjct: 7 REQLLKPLQQVCGVLASRPTLPIINNILLKVEGDRLSLTGTDLEVELSTEAQLAQAVDFS 66
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP-IMTLNSK 126
+ A+KF+DI +SLPE +++ E +K+G+SKF+L TL A +YP +M +
Sbjct: 67 GKFTIPAKKFLDISKSLPEDSLISVQFEEDKAIVKAGRSKFSLATLPANDYPNLMDWTPE 126
Query: 127 YDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVN 186
DF ++ Q T +++ FS+A QD RY+LNG+ + + AV++DGHRL +
Sbjct: 127 VDF--SIEQATFARLIDATQFSMANQDARYFLNGMKFETEGNLLRAVATDGHRLAVCTMP 184
Query: 187 IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFL 246
+ ++ S S +I+PRK V L RLL V L+I ++ I++ + + SKLIDG+F
Sbjct: 185 LTQELVSHS-VIVPRKAVLELSRLLSVSNEIVRLEIGSSNIRMTMNGVVFTSKLIDGRFP 243
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
DY+ V+ ++ + L R+L R +I+SN+K +GVRL + + LKI ++ +E+A
Sbjct: 244 DYRRVLPRNADRILEADTEVLRRALMRAAILSNEKFRGVRLSLDNDVLKINANNPEQEEA 303
>gi|268628295|gb|ACZ13546.1| DNA polymerase III beta chain [Xenorhabdus hominickii]
gi|268628297|gb|ACZ13547.1| DNA polymerase III beta chain [Xenorhabdus hominickii]
gi|268628299|gb|ACZ13548.1| DNA polymerase III beta chain [Xenorhabdus hominickii]
Length = 276
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 151/235 (64%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDGDRILVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL +NI +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMNIGQNL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ +NP++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 197 LPKNPDKTLEANCDTLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEA 251
>gi|119947309|ref|YP_944989.1| DNA polymerase III subunit beta [Psychromonas ingrahamii 37]
gi|119865913|gb|ABM05390.1| DNA polymerase III, beta subunit [Psychromonas ingrahamii 37]
Length = 367
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/309 (33%), Positives = 180/309 (58%), Gaps = 6/309 (1%)
Query: 9 KNAILHPLQMVIS-IVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
+ A L PLQ+V+S + + LPI++NIL+ ++S TD EV++ A+ + +
Sbjct: 7 REAFLRPLQLVVSSVAGGRPALPIMANILIEVKDNQLSLTGTDLEVELIAVIALENPSEN 66
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP-IMTLNSK 126
I V ARK +DI R L E ++ ++ + + I+SG+S++ L +L A ++P I + S
Sbjct: 67 GVITVPARKLLDICRGLSEPCEIKFQVKEEKVTIRSGRSRYLLSSLPAVDFPNIESWQSL 126
Query: 127 YDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVN 186
E T+ Q K ++ F++A QD+RYYLNG+ ++ + +V++DGHRL +
Sbjct: 127 --VELTVPQAEFKKLIEFTQFAMASQDVRYYLNGMYFEASEQTLRSVATDGHRLASCSIK 184
Query: 187 IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFL 246
+++ S +I+PRK V L +LL+N + V ++I N ++ + +KL+DG+F
Sbjct: 185 LNQVIEQQS-VIVPRKGVIELVKLLDNDQANVTIQIGQNNLRAVIDGFIFTTKLVDGRFP 243
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
DY+ VI +K + NR L ++ R +I+SN+K +GVRL++ N L+IT ++ RE+A
Sbjct: 244 DYRRVIPKNGDKELISNRESLKQAFSRAAILSNEKFRGVRLILSENLLQITANNPEREEA 303
Query: 307 SS-TDLIYH 314
D+ YH
Sbjct: 304 EEYIDVDYH 312
>gi|81251097|gb|ABB69894.1| DNA polymerase III beta chain [Nitrosomonas sp. CNS332]
Length = 373
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 179/303 (59%), Gaps = 7/303 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L + ++++ + PLQ V IVE+++ LPIL N+L+ K++ ++TD E+++ +
Sbjct: 1 MKLTI-SDRDLLFKPLQTVSGIVERRHTLPILLNVLISIRDGKLALVTTDLEIEVEATSN 59
Query: 61 VGY--GNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEY 118
+ S+ + V+ RK DILR+LP V + + I SGKS+F+LQ L A+++
Sbjct: 60 IPELENQGSLQMTVSVRKLQDILRALPSGSPVELIRSENRLQIVSGKSRFSLQLLPAEDF 119
Query: 119 PIMTL-NSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDG 177
P M N + D FTL+Q+ LK L V ++AQQD+RYYLNG LL + ++ V++D
Sbjct: 120 PRMAKDNERCDASFTLTQQILKKHLQRVSHAMAQQDLRYYLNGTLLLIEDNKLMLVATDT 179
Query: 178 HRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
HRL ++D +F S+ IIPRKTV L R LE+ + PV ++I + +I FS+ ++
Sbjct: 180 HRLAITSFDLDGQFEK-SETIIPRKTVLELIRQLEDSDKPVIVEIYSKKICFHFSDAVLV 238
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISII--SNDKLKGVRLVIKPNYLK 295
SK+I GKF+D++ I F +NR L +LQR +II SND + V L I L
Sbjct: 239 SKVISGKFIDFRRAIPQTSVFQFDINRLDFLHALQRTAIISSSNDLFRSVHLNITNGKLN 298
Query: 296 ITV 298
I+
Sbjct: 299 ISA 301
>gi|81251101|gb|ABB69897.1| DNA polymerase III beta chain [Nitrosomonas sp. IWT310]
Length = 373
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 179/303 (59%), Gaps = 7/303 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L + ++++ + PLQ V IVE+++ LPIL N+L+ K++ ++TD E+++ +
Sbjct: 1 MKLTI-SDRDLLFKPLQTVSGIVERRHTLPILLNVLISIRDGKLALVTTDLEIEVEATSN 59
Query: 61 VGY--GNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEY 118
+ S+ + V+ RK DILR+LP V + + I SGKS+F+LQ L A+++
Sbjct: 60 IPELENQGSLQMTVSVRKLQDILRALPSGSPVELIRSENRLQIVSGKSRFSLQLLPAEDF 119
Query: 119 PIMTL-NSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDG 177
P M N + D FTL+Q+ LK L V ++AQQD+RYYLNG LL + ++ V++D
Sbjct: 120 PRMVRDNERCDTSFTLTQQMLKKHLQRVSHAMAQQDLRYYLNGTLLLIEDNKLMLVATDT 179
Query: 178 HRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
HRL ++D +F S+ IIPRKTV L R LE+ + PV ++I + +I FS+ ++
Sbjct: 180 HRLAITSFDLDGQFEK-SETIIPRKTVLELIRQLEDSDKPVIVEIYSKKICFHFSDAVLV 238
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISII--SNDKLKGVRLVIKPNYLK 295
SK+I GKF+D++ I F +NR L +LQR +II SND + V L I L
Sbjct: 239 SKVISGKFIDFRRAIPQTSVFQFDINRLDFLHALQRTAIISSSNDLFRNVHLNITNGKLN 298
Query: 296 ITV 298
I+
Sbjct: 299 ISA 301
>gi|268628377|gb|ACZ13587.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
hainanensis]
Length = 276
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 149/235 (63%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDGDRLLVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I +K
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMGIGQKL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ N + L ++ R +I+SN+K +GVRL N LKIT ++ +E+A
Sbjct: 197 LPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNPEQEEA 251
>gi|268628301|gb|ACZ13549.1| DNA polymerase III beta chain [Xenorhabdus mauleonii]
Length = 276
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 152/235 (64%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDGDRILVRSGRSRFSLSTLPATDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL +NI +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMNIGQTL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ +NP++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ + N + + ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 197 LPKNPDKTLVANCDMIKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEA 251
>gi|268628357|gb|ACZ13577.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
kayaii]
gi|268628359|gb|ACZ13578.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
kayaii]
gi|268628361|gb|ACZ13579.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
kayaii]
gi|268628363|gb|ACZ13580.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
kayaii]
gi|268628365|gb|ACZ13581.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
kayaii]
gi|428623053|gb|AFZ40451.1| DNA polymerase III beta chain, partial [Photorhabdus luminescens
subsp. kayaii]
Length = 276
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 149/235 (63%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDGDRLLVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I +K
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMGIGQKL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ N + L ++ R +I+SN+K +GVRL N LKIT ++ +E+A
Sbjct: 197 LPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNPEQEEA 251
>gi|440645493|gb|AGC14761.1| DNA polymerase III beta chain, partial [Photorhabdus luminescens
subsp. kayaii]
Length = 276
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 149/235 (63%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDGDRLLVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I +K
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMGIGQKL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDTPLQLQIGSNXIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ N + L ++ R +I+SN+K +GVRL N LKIT ++ +E+A
Sbjct: 197 LPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNPEQEEA 251
>gi|268628373|gb|ACZ13585.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
luminescens]
gi|268628375|gb|ACZ13586.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
luminescens]
gi|391223775|gb|AFM37556.1| DNA polymerase III beta subunit, partial [Photorhabdus sp. Caborca]
gi|391223784|gb|AFM37560.1| DNA polymerase III beta subunit, partial [Photorhabdus sp. CH35]
Length = 276
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 149/235 (63%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDGDRLLVRSGRSRFSLSTLPAADFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I +K
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMGIGQKL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ N + L ++ R +I+SN+K +GVRL N LKIT ++ +E+A
Sbjct: 197 LPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNPEQEEA 251
>gi|268628379|gb|ACZ13588.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
akhurstii]
Length = 276
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 149/235 (63%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDGDRLLVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I +K
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMGIGQKL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ N + L ++ R +I+SN+K +GVRL N LKIT ++ +E+A
Sbjct: 197 LPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNPEQEEA 251
>gi|268628291|gb|ACZ13544.1| DNA polymerase III beta chain [Xenorhabdus miraniensis]
Length = 276
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 151/235 (64%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDGDRILVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL +NI +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMNIGQNL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ +NP++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 197 LPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEA 251
>gi|256821230|ref|YP_003145193.1| DNA polymerase III subunit beta [Kangiella koreensis DSM 16069]
gi|256794769|gb|ACV25425.1| DNA polymerase III, beta subunit [Kangiella koreensis DSM 16069]
Length = 367
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 174/306 (56%), Gaps = 17/306 (5%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
++ +L PLQ+V VEK+ LP+LSN+L+ + K+S +TD EV++ +
Sbjct: 7 RDQLLAPLQLVSGAVEKRQTLPVLSNVLMVVDDSKLSLTATDLEVELKAQVDLEGEFEPG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP----IMTLN 124
I V ARK +DI+RSL + E V I + + + S+F+L T+ A E+P ++L
Sbjct: 67 EITVPARKLLDIVRSLGDGENVKIEQSETRLKVITPSSRFSLSTMSANEFPNLDETVSLA 126
Query: 125 SKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQ 184
S L+Q LK ++ F++AQQD+RYYLNG+L F + V++DGHRL +
Sbjct: 127 S-----LELTQDVLKSLIEKTQFAMAQQDVRYYLNGMLFEFDNDKLTTVATDGHRLALSR 181
Query: 185 ----VNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
++ D K S+ IIPRK V L RLLE+ ++ + L + +N IK+I + SKL
Sbjct: 182 AKASIDADDKISA----IIPRKGVTELARLLEHSDDNITLNLGSNHIKVIGPDYSFTSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
+DG+F +Y+ V+ +K + +R SL R SI+ N+K +GVR ++ +++ ++
Sbjct: 238 VDGRFPEYEKVLPRNGDKIVIADRELFKESLSRASILCNEKFRGVRFMLTNEQVRLHANN 297
Query: 301 SNREKA 306
+E+A
Sbjct: 298 PEQEEA 303
>gi|114330038|ref|YP_746260.1| DNA polymerase III subunit beta [Nitrosomonas eutropha C91]
gi|114307052|gb|ABI58295.1| DNA polymerase III, beta subunit [Nitrosomonas eutropha C91]
Length = 373
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 179/303 (59%), Gaps = 7/303 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L + ++++ + PLQ V IVE+++ LPIL N+L+ K++ ++TD E+++ +
Sbjct: 1 MKLTI-SDRDLLFKPLQTVSGIVERRHTLPILLNVLISIRDGKLALVTTDLEIEVEATSN 59
Query: 61 VGY--GNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEY 118
+ S+ + V+ RK DILR+LP V + + I SGKS+F+LQ L A+++
Sbjct: 60 IPELENQGSLQMTVSVRKLQDILRALPSGSPVELIRSENRLQIVSGKSRFSLQLLPAEDF 119
Query: 119 PIMTL-NSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDG 177
P M N + D FTL+Q+ LK L V ++AQQD+RYYLNG LL + ++ V++D
Sbjct: 120 PRMAKDNERCDASFTLTQQILKKHLQRVSHAMAQQDLRYYLNGTLLLIEDNKLMLVATDT 179
Query: 178 HRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
HRL ++D +F S+ IIPRKTV L R LE+ + PV ++I + +I FS+ ++
Sbjct: 180 HRLAITSFDLDGQFEK-SETIIPRKTVLELIRQLEDSDKPVIVEIYSKKICFHFSDAVLV 238
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISII--SNDKLKGVRLVIKPNYLK 295
SK+I GKF+D++ I F +NR L +LQR +II SND + V L I L
Sbjct: 239 SKVISGKFIDFRRAIPQTSVFQFDINRLDFLHALQRTAIISSSNDLFRNVHLNITNGKLN 298
Query: 296 ITV 298
I+
Sbjct: 299 ISA 301
>gi|268628289|gb|ACZ13543.1| DNA polymerase III beta chain [Xenorhabdus szentirmaii]
Length = 276
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 151/235 (64%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
+ ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 IPARKFFDIWRGLPDGAEISVELDGDRILVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMGIGQNL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ +NP++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ + N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 197 LPKNPDKTLVANCDTLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEA 251
>gi|385276424|gb|AFI57505.1| DNA polymerase III beta, partial [Xenorhabdus sp. GDh7]
Length = 271
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 151/235 (64%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDGDRILVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + VS+DGHRL ++I +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVSTDGHRLAVCSMSIGQNL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ +NP++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 197 LPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEA 251
>gi|268628367|gb|ACZ13582.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
laumondii]
Length = 276
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 149/235 (63%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDGDRLLVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I +K
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMGIGQKL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ N + L ++ R +I+SN+K +GVRL N L+IT ++ +E+A
Sbjct: 197 LPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYFSENQLRITANNPEQEEA 251
>gi|292490172|ref|YP_003525611.1| DNA polymerase III subunit beta [Nitrosococcus halophilus Nc4]
gi|291578767|gb|ADE13224.1| DNA polymerase III, beta subunit [Nitrosococcus halophilus Nc4]
Length = 367
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 170/293 (58%), Gaps = 3/293 (1%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ I+ L V +VE+++ LPIL N+L+ +++S +TD EV+I T V +
Sbjct: 6 EREEIVRHLATVCGVVERRHTLPILFNVLLSVEEDRLSLTATDLEVEIRTTLEVLHPKGG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V+ARKF+DI R+LP ++ + E + SG S+FTL TL A+++P T + +
Sbjct: 66 -KTTVSARKFLDICRALPARAELEVQHEKGQFHVHSGHSRFTLSTLPAEDFP-STDSLEE 123
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
E L+Q LK +L+ F +A QD+RYYLNGLLL ++ + AV++DGHRL +
Sbjct: 124 VVELELTQAELKQLLHRTVFCMAHQDVRYYLNGLLLELGEETVYAVATDGHRLAVASLEK 183
Query: 188 DKKFSSCS-DIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFL 246
+ IIPRK V L RLLE PV LK NQ+ F + +KLIDG+F
Sbjct: 184 GPRREGVQIQSIIPRKAVLELVRLLEESNEPVRLKFGTNQMGAEFQGLSFSTKLIDGQFP 243
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
DYK VI EK F+ +R + ++L R++I++NDK +GVRL + L+ TV+
Sbjct: 244 DYKRVIPVGCEKRFVADREQFKQALGRVNILTNDKYRGVRLHLSNLKLQATVT 296
>gi|392310445|ref|ZP_10272979.1| DNA polymerase III subunit beta [Pseudoalteromonas citrea NCIMB
1889]
Length = 367
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 168/300 (56%), Gaps = 7/300 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ+ ++ E+ L PL V +E+K+ LPILSN+L+ ++ TD E+++
Sbjct: 1 MQITISREQ--FLKPLTQVSGAIERKHTLPILSNVLLEIKDGTLAMTGTDLEIELVAAIQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ S I + A+K +DI +SLP+ + + + + + SGKS+F+L TL A+++P
Sbjct: 59 LEGSVSDAKITLPAKKLLDICKSLPDGSDIKLASQEHQLLLTSGKSRFSLTTLAAEDFPN 118
Query: 121 MTLNSKYD--FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGH 178
+ ++D EF L++ L+ +L +FS+A QD+RYYLNG+ I V++DGH
Sbjct: 119 L---EQWDGEVEFQLTRLELRKLLESTHFSMANQDVRYYLNGMSFEVDNSEIKTVATDGH 175
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL Q + + +IIPRK V + RLL + + ++ N ++II + S
Sbjct: 176 RLAIAQKKLSESVDMQRQLIIPRKGVQEIMRLLPADDELLSIQFGANHVRIIDTEFTFTS 235
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KL+DG+F DY+ V+ +K NR L + QR+SI+SN+K +GVRL + LKI+
Sbjct: 236 KLVDGRFPDYRRVLPRGGDKLVTANREWLRSAFQRVSILSNEKFRGVRLNLSSGLLKISA 295
>gi|417842588|ref|ZP_12488670.1| DNA polymerase III subunit beta [Haemophilus haemolyticus M21127]
gi|341951426|gb|EGT77998.1| DNA polymerase III subunit beta [Haemophilus haemolyticus M21127]
Length = 366
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 181/307 (58%), Gaps = 6/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ ++ TD EV++++ T
Sbjct: 1 MQFSISREN--LLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNLLTITGTDLEVELSSQTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+KF+DI R+L + ++T+ E ++SG+S+FTL T A+EYP
Sbjct: 59 LSSSSENGTFTIPAKKFLDICRTLSDDSEITVTFEEDRALVQSGRSRFTLTTQPAEEYPN 118
Query: 121 MT-LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+T S+ DFE L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHR
Sbjct: 119 LTDWQSEVDFE--LPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHR 176
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L ++++++ + S +I+PRK V L RLLE + P L+I N ++I NI SK
Sbjct: 177 LAVCTISLEQELQNHS-VILPRKGVLELVRLLETSDEPARLQIGTNNLRIHLKNIVFTSK 235
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG+F DY+ V+ K + L ++ R SI+SN++++ VRL + N LKIT S
Sbjct: 236 LIDGRFPDYRRVLPRNATKIVEGSWEILKQAFVRASILSNERVRSVRLNLSENQLKITAS 295
Query: 300 SSNREKA 306
++ E+A
Sbjct: 296 NTEHEEA 302
>gi|154706526|ref|YP_001423441.1| DNA polymerase III, beta chain [Coxiella burnetii Dugway 5J108-111]
gi|154355812|gb|ABS77274.1| DNA polymerase III, beta chain [Coxiella burnetii Dugway 5J108-111]
Length = 369
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 180/303 (59%), Gaps = 2/303 (0%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
+N + +L PLQ+VI +VE+K LPILSN+L+ ++++S TD EV++ T +
Sbjct: 3 LNLIRETLLKPLQLVIGVVERKQTLPILSNVLLSIETDQLSITGTDLEVELIGQTKLDKN 62
Query: 65 NS-SINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTL 123
++ S + + RK +DI R+LP+ + +Y + + + ++SG+S+F L TL ++++P +
Sbjct: 63 STESSRLTLPGRKLMDICRALPDNAPIELYRDKEKIILRSGRSRFMLSTLPSEDFPAVE- 121
Query: 124 NSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
+ E L Q T + +L +F++AQQD+RYYLNGLLL + A+++DGHRL
Sbjct: 122 RRESQLELALPQSTFRHLLYRTHFAMAQQDVRYYLNGLLLETYPNKLRAIATDGHRLAAN 181
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDG 243
+ + IIIPRK + L RLLE E ++I NN I + ++ SKLI+G
Sbjct: 182 TLLVQTNTEHRLQIIIPRKGIIELLRLLEEDEALATIRIGNNHIGVSTNDFTFTSKLIEG 241
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNR 303
+F D + VI +K F+++R+ L ++L R +I+ N+K KGV ++ L+I ++ +
Sbjct: 242 RFPDCERVIPKGGDKQFVIDRDILKQALSRTAILCNEKFKGVCFELRQGLLRILATNPEQ 301
Query: 304 EKA 306
E A
Sbjct: 302 EAA 304
>gi|347300095|dbj|BAK82011.1| DNA polymerase III beta chain [Xenorhabdus sp. IkWj136]
Length = 276
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 151/235 (64%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDGDRILVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + VS+DGHRL ++I +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVSTDGHRLAVCSMSIGQNL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ +NP++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 197 LPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEA 251
>gi|268628317|gb|ACZ13557.1| DNA polymerase III beta chain [Xenorhabdus cabanillasii]
Length = 276
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 153/244 (62%), Gaps = 3/244 (1%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
+ ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 IPARKFFDIWRGLPDGAEISVELDGDRILVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL +NI +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMNIGQSL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ + P++L I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDTPLQLXIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASS-TD 310
+ +K+ N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A D
Sbjct: 197 LPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEAEEIVD 256
Query: 311 LIYH 314
+ YH
Sbjct: 257 VNYH 260
>gi|83642916|ref|YP_431351.1| DNA polymerase III subunit beta [Hahella chejuensis KCTC 2396]
gi|83630959|gb|ABC26926.1| DNA polymerase III, beta subunit [Hahella chejuensis KCTC 2396]
Length = 367
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 172/309 (55%), Gaps = 3/309 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L + E A++ LQM+ +VEK+ +P+L+N+L+ K+ T+ EV++ +
Sbjct: 1 MKLTITRE--ALVTSLQMISGVVEKRQTMPVLANVLLDARDGKLVITGTNMEVELVAEIS 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
I V A+KF DI R+LPE + I +++ + ++ G S F L TL A+ +P
Sbjct: 59 DVNIEHESRITVPAKKFTDICRALPEGAAIGIELKDGRLNVRYGSSHFILSTLPAEHFPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + TL Q+ LK +++ F++AQQD+RYYLNG+L+ ++ + V++DGHRL
Sbjct: 119 VE-EEPESVKVTLPQRELKRLIDATAFAMAQQDVRYYLNGMLMELDEQGLRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
V++ S I+PRK + L RLL + + L +N ++ + SKL
Sbjct: 178 ALANVSLQTGVSEKRQPIVPRKGILELGRLLNDTDESCTLVFGDNHVRASVGHFTFTSKL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDGKF DY+ VI +K L +R L L R SI+S++ ++GVRL + LK+ ++
Sbjct: 238 IDGKFPDYQRVIPRSGDKVMLADRVLLKGVLSRASILSHESIRGVRLQFEEGLLKVFANN 297
Query: 301 SNREKASST 309
++E+A +
Sbjct: 298 PDQEEAEDS 306
>gi|268628273|gb|ACZ13535.1| DNA polymerase III beta chain [Xenorhabdus doucetiae]
Length = 276
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 149/235 (63%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ + + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVEQDGDRILVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
TL Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL +NI +
Sbjct: 78 TLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMNIGQNL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ +NP++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ K+ N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 197 LPKNPNKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEA 251
>gi|30248033|ref|NP_840103.1| DNA polymerase III subunit beta [Nitrosomonas europaea ATCC 19718]
gi|30179918|emb|CAD83913.1| DNA polymerase III, beta chain [Nitrosomonas europaea ATCC 19718]
Length = 373
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 115/319 (36%), Positives = 186/319 (58%), Gaps = 8/319 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L + T+++ + PLQ V IVE+++ LPILSN L+ + +++ ++TD E++ +
Sbjct: 1 MKLTI-TDRDLLFKPLQTVSGIVERRHTLPILSNTLIEIRNGQLTLVTTDLEIEAEATSN 59
Query: 61 VGY--GNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEY 118
+ ++ V+ RK DILR+LP + + + I SGKS+F+LQ L A+++
Sbjct: 60 IPELENQGALQTTVSVRKLQDILRALPSGAAIELTRSENRLQIVSGKSRFSLQLLPAEDF 119
Query: 119 PIMTLNSK-YDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDG 177
P M +S+ +TL+Q+ LK L V ++AQQD+RYYLNG+LL + + V++D
Sbjct: 120 PRMIRDSEPCSATYTLAQRVLKKHLQRVAHAMAQQDLRYYLNGMLLLIEDNKLTLVATDT 179
Query: 178 HRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
HRL +++D F S+ I+PRKTV L R LE+ + PV ++I ++ FS+ ++
Sbjct: 180 HRLGITSIDLDGNFEK-SETIVPRKTVLELIRQLEDSDKPVIVEIYPKKVCFRFSDAVLV 238
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISII--SNDKLKGVRLVIKPNYLK 295
SK+I GKFLD++ I F VNR L +LQR +II SND + V L I L
Sbjct: 239 SKVISGKFLDFRRAIPQTSVFQFDVNRLDFLHALQRTAIISSSNDLFRNVHLNITNGKLN 298
Query: 296 ITVSSSNREKASST-DLIY 313
I+ + +E+A D++Y
Sbjct: 299 ISAKNKEQEEAQEEIDIVY 317
>gi|268628263|gb|ACZ13530.1| DNA polymerase III beta chain [Xenorhabdus kozodoii]
gi|268628265|gb|ACZ13531.1| DNA polymerase III beta chain [Xenorhabdus kozodoii]
Length = 276
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 150/235 (63%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDGDRILVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + +++DGHRL +NI +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTIATDGHRLAVCSMNIGQNL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ +NP++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFTFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 197 LPKNPDKILEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEA 251
>gi|268628323|gb|ACZ13560.1| DNA polymerase III beta chain [Xenorhabdus innexi]
gi|268628325|gb|ACZ13561.1| DNA polymerase III beta chain [Xenorhabdus innexi]
Length = 276
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 150/235 (63%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
+ ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 IPARKFFDIWRGLPDGAEISVELDGDRILVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + VS+DGHRL +NI +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVSTDGHRLAVCSMNIGQSL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ +NP++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 197 LPKNPDKILEANCDTLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEA 251
>gi|444921289|ref|ZP_21241126.1| DNA polymerase III subunit beta [Wohlfahrtiimonas chitiniclastica
SH04]
gi|444507648|gb|ELV07823.1| DNA polymerase III subunit beta [Wohlfahrtiimonas chitiniclastica
SH04]
Length = 366
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 180/299 (60%), Gaps = 10/299 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITT--- 57
M+L+V E+ +L PLQ +I + EK LP+L+N+ + E+I +T+ E++++
Sbjct: 1 MELIVQREQ--LLQPLQALIGVTEKGQTLPVLANVKLQVKEEEIILTTTNLEIELSCALP 58
Query: 58 YTAVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKE 117
Y + G ++I A+K +DIL++LP + + +E + IK+G+SKF+L L +E
Sbjct: 59 YHSTATGGTTI----PAKKLLDILKALPHGIDIHMILEPTKVEIKAGRSKFSLACLPLEE 114
Query: 118 YPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDG 177
+P++ + ++ TL + + +L V +++A D+RY+LNG+LL Q I AV++DG
Sbjct: 115 FPVLD-HIDFNNTLTLPKDRFRSLLQNVAYAMATADVRYFLNGMLLDVQDSLITAVATDG 173
Query: 178 HRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
HRL + + + I+PRK V L +L+EN+ P+ L++S+N +++ ++
Sbjct: 174 HRLACSRYPFEDATHLTNQFIVPRKAVEELLKLIENEAAPLHLQLSDNHLRVELGSMMFT 233
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
+KLI+GKF DYK VI EK + +R++++ SL R SI+S DK +G+R+ I +K+
Sbjct: 234 TKLIEGKFPDYKRVIPPIGEKIIMADRSEMIDSLMRTSILSQDKFRGIRMNISHCLIKL 292
>gi|428622981|gb|AFZ40441.1| DNA polymerase III beta chain, partial [Xenorhabdus ehlersii]
Length = 276
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 151/235 (64%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDGDRILVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + +S+DGHRL ++I +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTISTDGHRLAVCSMSIGQDL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ +NP++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 197 LPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEA 251
>gi|268628303|gb|ACZ13550.1| DNA polymerase III beta chain [Xenorhabdus bovienii]
gi|268628307|gb|ACZ13552.1| DNA polymerase III beta chain [Xenorhabdus bovienii]
Length = 276
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 152/235 (64%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
+ ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 IPARKFFDIWRGLPDGAEISVELDGDRILVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L +++ + V++DGHRL +NI +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEEEELRTVATDGHRLAVCSMNIGQNL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ ++P++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDSPLQLQIGSNNIRAHVGDFVFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 197 LPKNPDKTLEANCDVLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEA 251
>gi|268628339|gb|ACZ13568.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
temperata]
gi|268628341|gb|ACZ13569.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
temperata]
gi|268628343|gb|ACZ13570.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
temperata]
Length = 276
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 148/235 (62%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + D EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDGDRLLVRSGRSRFSLSTLPAADFPNLD-DWQSDVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMGIGQNL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ + + L ++ R +I+SN+K +GVRL N LKIT ++ +E+A
Sbjct: 197 LPKSPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNPEQEEA 251
>gi|268628269|gb|ACZ13533.1| DNA polymerase III beta chain [Xenorhabdus ehlersii]
gi|428622941|gb|AFZ40436.1| DNA polymerase III beta chain, partial [Xenorhabdus ehlersii]
Length = 276
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 152/235 (64%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ +++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDSDRILVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + +S+DGHRL ++I +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTISTDGHRLAVCSMSIGQDL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ +NP++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 197 LPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEA 251
>gi|348589354|ref|YP_004873816.1| DNA polymerase III subunit beta [Taylorella asinigenitalis MCE3]
gi|347973258|gb|AEP35793.1| DNA polymerase III beta subunit [Taylorella asinigenitalis MCE3]
Length = 394
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 114/322 (35%), Positives = 179/322 (55%), Gaps = 27/322 (8%)
Query: 11 AILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG------ 64
AI PL+ V+ IVEK+ LPIL+++L+ K+ E + +++D +QITT G
Sbjct: 10 AIRKPLETVVGIVEKRASLPILAHVLIRKSPEYLDLVTSDMSIQITTRLNFGRDSEADSE 69
Query: 65 -----------------NSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSK 107
N+ + I V A KF++I+R +P + + + + S
Sbjct: 70 TNSKPEILDGLEEFSDDNNILKIAVPAHKFMNIVRVMPTGAMIEANLSESKINLTGADSS 129
Query: 108 FTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQK 167
FTLQTL +YP + + F++ K LK ILN+V ++AQ DIRYYLNG+LL +
Sbjct: 130 FTLQTLPGADYPEADFDVDWKCNFSIKAKDLKKILNLVSCAMAQNDIRYYLNGMLLVIEP 189
Query: 168 KNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQI 227
+ V++DGHRL++ +++ + S +IIPRKTV L RLLE+ + V + +S+ I
Sbjct: 190 GKLHGVATDGHRLSHAAESVE-GVTESSKVIIPRKTVEHLLRLLEDSNSDVRISVSSRSI 248
Query: 228 KIIFSNIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISN-DKLKGVR 286
+ +F NIEIISK ++GKF D++ VI Y + R+ L +L R +I+ N DKL ++
Sbjct: 249 RFVFGNIEIISKQVEGKFPDFEKVIPKGYGTQITIKRSILNENLNRANILVNEDKLHSIK 308
Query: 287 LVIKPNYLKITVSSSNREKASS 308
L + L T+SSSN ++ S
Sbjct: 309 LHFANDLL--TISSSNLDQEES 328
>gi|268628305|gb|ACZ13551.1| DNA polymerase III beta chain [Xenorhabdus bovienii]
Length = 276
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 152/235 (64%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
+ ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 IPARKFFDIWRGLPDGAEISVELDGDRILVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L +++ + V++DGHRL +NI +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEEEELRTVATDGHRLAVCSMNIGQNL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ ++P++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDSPLQLQIGSNNIRAHVGDFVFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 197 LPKNPDKTLEANCDVLKQAFSRAAILSNEKFRGVRIYLSQNQLRITANNPEQEEA 251
>gi|268628369|gb|ACZ13583.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
caribbeanensis]
gi|268628371|gb|ACZ13584.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
caribbeanensis]
Length = 276
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 149/235 (63%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDGDRLLVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I +K
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEAEELRTVATDGHRLAVCSMGIGQKL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ + + L ++ R +I+SN+K +GVRL N LKIT ++ +E+A
Sbjct: 197 LPKNPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSKNQLKITANNPEQEEA 251
>gi|330861745|emb|CBX71919.1| DNA polymerase III subunit beta [Yersinia enterocolitica W22703]
Length = 253
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/248 (36%), Positives = 146/248 (58%), Gaps = 2/248 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + + LPIL N+L+ + TD E+++ A+ + +
Sbjct: 6 EREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALSHPHEQ 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++T+ ++ + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDIWRGLPEGAEITVALDGDRLLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCAMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L RLL+ + P+ L+I +N I+ + SKL+DG+F D
Sbjct: 185 GQTLPSHS-VIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNK 255
Y+ V+ K
Sbjct: 244 YRRVLPKK 251
>gi|428623005|gb|AFZ40446.1| DNA polymerase III beta chain, partial [Xenorhabdus sp. TZ01]
Length = 276
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 151/235 (64%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDGDRILVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + +++DGHRL ++I +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTIATDGHRLAVCSMSIGQDL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ +NP++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 197 LPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEA 251
>gi|268628309|gb|ACZ13553.1| DNA polymerase III beta chain [Xenorhabdus bovienii]
Length = 276
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 152/235 (64%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
+ ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 IPARKFFDIWRGLPDGAEISVELDGDRILVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L +++ + V++DGHRL +NI +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEEEELRTVATDGHRLAVCSMNIGQNL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ ++P++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDSPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 197 LPKNPDKTLEANCDVLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEA 251
>gi|268628319|gb|ACZ13558.1| DNA polymerase III beta chain [Xenorhabdus budapestensis]
gi|268628321|gb|ACZ13559.1| DNA polymerase III beta chain [Xenorhabdus budapestensis]
Length = 276
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 153/244 (62%), Gaps = 3/244 (1%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
+ ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 IPARKFFDIWRGLPDGAEISVELDGDRILVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL ++I +
Sbjct: 78 PLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMHIGQSL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASS-TD 310
+ +K+ N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A D
Sbjct: 197 LPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEAEEIVD 256
Query: 311 LIYH 314
+ YH
Sbjct: 257 VKYH 260
>gi|268628267|gb|ACZ13532.1| DNA polymerase III beta chain [Xenorhabdus kozodoii]
Length = 276
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 150/235 (63%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDGDRILVRSGRSRFSLSTLPATDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + +++DGHRL +NI +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTIATDGHRLAVCSMNIGQNL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ +NP++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 197 LPKNPDKILEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEA 251
>gi|268628271|gb|ACZ13534.1| DNA polymerase III beta chain [Xenorhabdus griffiniae]
Length = 276
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 152/235 (64%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ +++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDSDRILVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + +++DGHRL ++I +
Sbjct: 78 SLPQSTLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTIATDGHRLAVCSMSIGQDL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ +NP++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 197 LPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEA 251
>gi|348020145|gb|AEP44019.1| DNA polymerase III beta chain [Xenorhabdus sp. IMI 397775]
Length = 276
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 148/235 (62%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ + + ++SG+S+F+L TL A ++P + + + D EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVEQDGDRILVRSGRSRFSLSTLPASDFPNLD-DWQSDVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMGIGQNL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ +NP++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ K+ N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 197 LPKNPNKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEA 251
>gi|90408443|ref|ZP_01216603.1| Putative DNA polymerase III, beta chain [Psychromonas sp. CNPT3]
gi|90310427|gb|EAS38552.1| Putative DNA polymerase III, beta chain [Psychromonas sp. CNPT3]
Length = 368
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 177/307 (57%), Gaps = 5/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVI-SIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYT 59
MQ ++ E A L PLQ+V S+ + LPI++NIL+ +S TD EV++ T
Sbjct: 1 MQFSISRE--AFLRPLQLVAGSVAGGRPALPIMANILIQIKDGILSLTGTDLEVELITQI 58
Query: 60 AVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP 119
+ + I V ARK ++I R L + ++ +++ + ++SG+S++ L +L A ++P
Sbjct: 59 HLESPSEEGEITVPARKLLNICRGLSDPCEIKFQVKDDRVTVRSGRSRYLLSSLPASDFP 118
Query: 120 IMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+ + K EF ++QK K ++ F++A QD+RYYLNG+ ++ +V++DGHR
Sbjct: 119 NIE-SWKSLAEFNVAQKEFKKLIEFTQFAMASQDVRYYLNGMYFEASGDSLRSVATDGHR 177
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L + + S +I+PRK V L +LL+N++ V ++I N ++ I N SK
Sbjct: 178 LASCAIKLSTPIEEQS-LIVPRKGVVELVKLLDNEQENVTIQIGKNNLRAIIGNFIFTSK 236
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
L+DG+F DY+ VI +K + +R L ++ R +I+SN+K +GVRL + N L+IT +
Sbjct: 237 LVDGRFPDYRRVIPRNGDKELIASRESLKQAFTRAAILSNEKFRGVRLTLSKNLLQITAN 296
Query: 300 SSNREKA 306
+ RE+A
Sbjct: 297 NPEREEA 303
>gi|357403390|ref|YP_004915314.1| DNA polymerase III subunit beta [Methylomicrobium alcaliphilum 20Z]
gi|351716055|emb|CCE21706.1| DNA polymerase III subunit beta [Methylomicrobium alcaliphilum 20Z]
Length = 366
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 172/298 (57%), Gaps = 4/298 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ ++N E+ +L PLQ ++S++EK+ +PILSN+L+ + TD EVQI T A
Sbjct: 1 MKYIINREQ--LLVPLQQIVSVIEKRQTMPILSNVLMVFRQNSLLMTGTDLEVQIVTEIA 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + I + ARKF+DI R LP + + + + + + SG+S+F L TL A+ YP
Sbjct: 59 IE-NTTFAEITLPARKFLDICRLLPTGADIKLEVADDKVKVLSGRSRFILSTLPAENYPE 117
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ ++ D FT++ K L F +A QD+RYYLNGLLL+ I V+SDGHRL
Sbjct: 118 FS-ETELDHRFTINAGLFKKALEKTVFCMASQDVRYYLNGLLLNISNSRIKLVASDGHRL 176
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ ++ N++ + II+PRK V L RLL++ E + ++ S+N I++ +N +KL
Sbjct: 177 SVFEDNLENPAGYEARIILPRKGVMELVRLLDDPEIELAVEFSSNNIRVTINNTIFSAKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
+D K+ D+ V + + R L +L R++I+SN+K KGV + + LKI+
Sbjct: 237 VDAKYPDFNRVFHQDFLTPIHIQRQLLKDALTRVAILSNEKYKGVTFDLSSDSLKISA 294
>gi|345864663|ref|ZP_08816861.1| DNA polymerase III subunit beta [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345124196|gb|EGW54078.1| DNA polymerase III subunit beta [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 366
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 109/314 (34%), Positives = 183/314 (58%), Gaps = 5/314 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L +N E +L PLQ + +VEK+ LPIL+N+L ++ +TD E+++ TY
Sbjct: 1 MKLQINREH--LLLPLQKITGVVEKRQTLPILANVLFQAKHNQLIMTATDLEIEMRTYLD 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + A K + I +SLP+ + I +N + I +G ++F+L L A +YP
Sbjct: 59 IDCSDE-FEFTIPALKLLSICKSLPDGSTLNIEEKNDRVNISTGNNRFSLSLLPANDYPS 117
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ +S F + Q L+ ++ F++AQQD+RYYLNGLLL I V++DGHRL
Sbjct: 118 IQSSSSN-ISFEVQQGILRKLIANTQFAMAQQDVRYYLNGLLLEISNGIIKTVATDGHRL 176
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ Q+ + + + +IIPRK + L RLL+ EN + ++S+N +++ SKL
Sbjct: 177 AFSQIKAIENYELKTQLIIPRKAIIELYRLLDESENTIRFEVSSNYVRVHLDRTIFTSKL 236
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG F DY+ VI E ++++++L +SL+R SI+SN+K KG++L IK + ++I ++
Sbjct: 237 IDGVFPDYEKVIPKNNENKLVMDKSELKKSLRRASILSNEKYKGIKLEIKEDRVQIIANN 296
Query: 301 SNREKAS-STDLIY 313
+E+A DL Y
Sbjct: 297 PEQEEAKIEIDLDY 310
>gi|268628329|gb|ACZ13563.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
tasmaniensis]
gi|268628331|gb|ACZ13564.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
tasmaniensis]
Length = 276
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 148/235 (62%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDGDRLLVRSGRSRFSLSTLPAADFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMGIGQNL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ + + L ++ R +I+SN+K +GVRL N LKIT ++ +E+A
Sbjct: 197 LPKSPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNPEQEEA 251
>gi|345876684|ref|ZP_08828449.1| DNA polymerase III beta subunit [endosymbiont of Riftia pachyptila
(vent Ph05)]
gi|344226284|gb|EGV52622.1| DNA polymerase III beta subunit [endosymbiont of Riftia pachyptila
(vent Ph05)]
Length = 370
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 109/314 (34%), Positives = 183/314 (58%), Gaps = 5/314 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L +N E +L PLQ + +VEK+ LPIL+N+L ++ +TD E+++ TY
Sbjct: 5 MKLQINREH--LLLPLQKITGVVEKRQTLPILANVLFQAKHNQLIMTATDLEIEMRTYLD 62
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + A K + I +SLP+ + I +N + I +G ++F+L L A +YP
Sbjct: 63 IDCSDE-FEFTIPALKLLSICKSLPDGSTLNIEEKNDRVNISTGNNRFSLSLLPANDYPS 121
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ +S F + Q L+ ++ F++AQQD+RYYLNGLLL I V++DGHRL
Sbjct: 122 IQSSSSN-ISFEVQQGILRKLIANTQFAMAQQDVRYYLNGLLLEISNGIIKTVATDGHRL 180
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ Q+ + + + +IIPRK + L RLL+ EN + ++S+N +++ SKL
Sbjct: 181 AFSQIKAIENYELKTQLIIPRKAIIELYRLLDESENTIRFEVSSNYVRVHLDRTIFTSKL 240
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG F DY+ VI E ++++++L +SL+R SI+SN+K KG++L IK + ++I ++
Sbjct: 241 IDGVFPDYEKVIPKNNENKLVMDKSELKKSLRRASILSNEKYKGIKLEIKEDRVQIIANN 300
Query: 301 SNREKAS-STDLIY 313
+E+A DL Y
Sbjct: 301 PEQEEAKIEIDLDY 314
>gi|268628335|gb|ACZ13566.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
thracensis]
gi|268628337|gb|ACZ13567.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
thracensis]
Length = 276
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 148/235 (62%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDGDRLLVRSGRSRFSLSTLPAADFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMGIGQNL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ + + L ++ R +I+SN+K +GVRL N LKIT ++ +E+A
Sbjct: 197 LPKSPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNPEQEEA 251
>gi|89074701|ref|ZP_01161159.1| DNA polymerase III subunit beta [Photobacterium sp. SKA34]
gi|89049465|gb|EAR55026.1| DNA polymerase III subunit beta [Photobacterium sp. SKA34]
Length = 366
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 170/299 (56%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + + LPIL NIL+ +S TD EV++ + S
Sbjct: 6 EREYLLKPLQQVAAALGGRPSLPILGNILLKVEDGCLSMTGTDLEVELIAKVVLEGDYES 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ V +RKF+DI R LP +++ E + I+S +S++TL TL A ++P + + +
Sbjct: 66 GTVTVPSRKFLDICRGLPSNATISVSYEGDRVLIRSSRSRYTLTTLPAADFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ FTL Q ++ +++ FS+A QD+RYYLNG+L +++ +V++DGHR+ ++
Sbjct: 125 EVAFTLEQGRMRQLIDSTQFSMANQDVRYYLNGMLFETDGQHLRSVATDGHRMAVCAIDT 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + +I+PRK V L RL +N E+ V ++I N+ I+ +N SKL+DG+F D
Sbjct: 185 GHELPT-KQVIVPRKGVLELVRLFDNPESLVNIQIGNSNIRATVNNFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K ++ + R +I+SN+K +GVR+ + ++IT ++ +E+A
Sbjct: 244 YRRVMPQNSTKFVEAGCEEMRNAFARAAILSNEKFRGVRVNLSNGEMRITANNPEQEEA 302
>gi|268628345|gb|ACZ13571.1| DNA polymerase III beta chain [Photorhabdus temperata subsp. khanii
NC19]
gi|268628347|gb|ACZ13572.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
khanii]
Length = 276
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 148/235 (62%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDGDRLLVRSGRSRFSLSTLPAADFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETESEELRTVATDGHRLAVCSMGIGQNL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ + + L ++ R +I+SN+K +GVRL N LKIT ++ +E+A
Sbjct: 197 LPKNPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNPEQEEA 251
>gi|268628349|gb|ACZ13573.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
khanii]
Length = 276
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 148/235 (62%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDGDRLLVRSGRSRFSLSTLPAADFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMGIGQNL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ + + L ++ R +I+SN+K +GVRL N LKIT ++ +E+A
Sbjct: 197 LPKNPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNPEQEEA 251
>gi|399116884|emb|CCG19695.1| DNA polymerase III beta subunit [Taylorella asinigenitalis 14/45]
Length = 394
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 177/322 (54%), Gaps = 27/322 (8%)
Query: 11 AILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG------ 64
AI PL+ V+ IVEK+ LPIL+++L+ K+ E + +++D +QITT G
Sbjct: 10 AIRKPLETVVGIVEKRASLPILAHVLIRKSPEYLDLVTSDMSIQITTRLNFGRDSETDSE 69
Query: 65 -----------------NSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSK 107
N+ + I V A KF++I+R +P + + + + S
Sbjct: 70 TNSKPEILDGPEEFSDDNNILKIAVPAHKFMNIVRVMPTGAMIEANLSESKINLTGADSS 129
Query: 108 FTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQK 167
FTLQTL +YP + + F++ K LK ILN+V ++AQ DIRYYLNG+LL +
Sbjct: 130 FTLQTLPGADYPEADFDVDWKCNFSIKAKDLKKILNLVSCAMAQNDIRYYLNGMLLVIEP 189
Query: 168 KNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQI 227
+ V++DGHRL++ +++ + +IIPRKTV L RLLE+ + V + +S+ I
Sbjct: 190 GKLHGVATDGHRLSHAAESVE-GVTESDKVIIPRKTVEHLLRLLEDSNSDVRISVSSRSI 248
Query: 228 KIIFSNIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISN-DKLKGVR 286
+ +F NIEIISK ++GKF D+ VI Y + R+ L +L R +I+ N DKL ++
Sbjct: 249 RFVFGNIEIISKQVEGKFPDFDKVIPKGYGTQITIKRSILNENLNRANILVNEDKLHSIK 308
Query: 287 LVIKPNYLKITVSSSNREKASS 308
L + L T+SSSN ++ S
Sbjct: 309 LHFANDLL--TISSSNLDQEES 328
>gi|333891492|ref|YP_004465367.1| DNA polymerase III subunit beta [Alteromonas sp. SN2]
gi|332991510|gb|AEF01565.1| DNA polymerase III subunit beta [Alteromonas sp. SN2]
Length = 366
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 173/299 (57%), Gaps = 4/299 (1%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ L PLQ+V VE+++ LPILSN+L+ + + + TD EV++ + + +
Sbjct: 7 REQFLQPLQLVSGAVERRHTLPILSNVLIKVSEDALWLTGTDLEVELISSVKLEGEFTEG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP-IMTLNSKY 127
I V A+K DI+R + E + I+ IK+G+ ++TL TL A +YP + +
Sbjct: 67 EITVPAKKLFDIIRGISEGTDIHFSIDGNKALIKAGRGRYTLSTLSANDYPNLEDWEGEV 126
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+FE T S +K +++ FS+AQQD+RYYLNG+ L ++ I V++DGHRL +++
Sbjct: 127 EFEITCSD--MKRLIDSTSFSMAQQDVRYYLNGMSLETEENIIRTVATDGHRLALCRLSY 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + +IIPRK V + RL+ + ++++I N ++I ++ SKL+DG+F D
Sbjct: 185 ETTLPA-RQVIIPRKGVLEISRLITEDDKSLKVQIGANHLRIFSNDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + ++ L + R +I+SN+K +GVRL + LKIT ++ +E+A
Sbjct: 244 YRRVLPQDGDKEIIASKAVLKDAFSRAAILSNEKFRGVRLNLSSGELKITANNPEQEEA 302
>gi|268628333|gb|ACZ13565.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
tasmaniensis]
Length = 276
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 148/235 (62%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISLELDGDRLLVRSGRSRFSLSTLPAADFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMGIGQNL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ + + L ++ R +I+SN+K +GVRL N LKIT ++ +E+A
Sbjct: 197 LPKSPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNPEQEEA 251
>gi|268628351|gb|ACZ13574.1| DNA polymerase III beta chain [Photorhabdus asymbiotica subsp.
australis]
Length = 276
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 148/235 (62%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDGDRLLVRSGRSRFSLSTLPAADFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMGIGQNL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ + + L ++ R +I+SN+K +GVRL N LKIT ++ +E+A
Sbjct: 197 LPKSPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSKNQLKITANNPEQEEA 251
>gi|268628353|gb|ACZ13575.1| DNA polymerase III beta chain [Photorhabdus sp. Q614]
gi|268628355|gb|ACZ13576.1| DNA polymerase III beta chain [Photorhabdus asymbiotica subsp.
asymbiotica]
Length = 276
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 148/235 (62%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDGDRLLVRSGRSRFSLSTLPAADFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMGIGQNL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ + P++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ + + L ++ R +I+SN+K +GVRL N LKIT ++ +E+A
Sbjct: 197 LPKNPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSKNQLKITANNPEQEEA 251
>gi|88798538|ref|ZP_01114122.1| DNA polymerase III subunit beta [Reinekea blandensis MED297]
gi|88778638|gb|EAR09829.1| DNA polymerase III subunit beta [Reinekea sp. MED297]
Length = 369
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 159/280 (56%), Gaps = 2/280 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ +L PLQ+V +VEK+ LP+LSN+L+ +++ TD EV++ + S
Sbjct: 8 REQLLKPLQLVSGVVEKRQTLPVLSNVLLEVEGNQLALTGTDLEVELIGRVELSEPASDG 67
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
I V A+KF+DI+RSLPE +++ + + SG+SKFTL +L A E+P + +
Sbjct: 68 AITVPAKKFLDIVRSLPEDAIISLQQTEDRVQVASGRSKFTLSSLPATEFPNIEQDENAQ 127
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
E+ L Q L +++ F++AQQD+RYYLNG+ + + + VS+DGHRL ++D
Sbjct: 128 -EYRLPQNLLSQLIDATAFAMAQQDVRYYLNGMSVELNQSLVRTVSTDGHRLAMSSRHVD 186
Query: 189 K-KFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+I+PRK + L RLL + + PV+L I + ++ +KL+DGKF D
Sbjct: 187 GLNVPERKQVIVPRKGILELNRLLSDDDQPVQLYIGSTHLRTTTDEFTFTTKLVDGKFPD 246
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRL 287
Y+ VI +K + +R + R +I++N+K +GVR+
Sbjct: 247 YERVIPRGGDKEVVGDRQVMKAIFSRAAILANEKYRGVRM 286
>gi|268628275|gb|ACZ13536.1| DNA polymerase III beta chain [Xenorhabdus romanii]
Length = 276
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 148/235 (62%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ + + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVEQDGDRILVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMGIGQNL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ +NP++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ K+ N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 197 LPKNPNKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEA 251
>gi|299133398|ref|ZP_07026593.1| DNA polymerase III, beta subunit [Afipia sp. 1NLS2]
gi|298593535|gb|EFI53735.1| DNA polymerase III, beta subunit [Afipia sp. 1NLS2]
Length = 372
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 101/314 (32%), Positives = 185/314 (58%), Gaps = 14/314 (4%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQIT-TYTA-VG 62
V E+ +L L V +VE++N +PIL N+L+ ++ ++S +TD ++++T T A +
Sbjct: 3 VTVERAQLLKSLGHVHRVVERRNTIPILGNVLIRADNARLSLKATDLDLEVTETLPAEIA 62
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPI 120
G S+ V A F DI+R LP+ ++ + + + + I++G+S+FTLQTL ++P
Sbjct: 63 TGGSTT---VPAHMFYDIVRKLPDGSQIVLESDGERAVLAIRAGRSRFTLQTLPESDFPD 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSD 176
+ + FTLS +K +++ F+I+ ++ RYYLNG+ L S +++ + AV++D
Sbjct: 120 LAAG-EMTHSFTLSAADMKRLIDRTQFAISTEETRYYLNGIYLHAAGSGKEQTLRAVATD 178
Query: 177 GHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEI 236
GHRL + + + K +I+PRKTV +QRL+E+ E + +++S +I+ +N+ +
Sbjct: 179 GHRLAQFDLPLPKSAVGMPGVIVPRKTVGEVQRLIEDNEAEISIELSQGKIRFTLANVVL 238
Query: 237 ISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
SKLIDG F DY VI EK +V++ ++ R+S IS+++ + V+L + K+
Sbjct: 239 TSKLIDGTFPDYGRVIPQNNEKELIVDKRDFEAAVDRVSTISSERGRAVKLALSAG--KL 296
Query: 297 TVSSSNREKASSTD 310
+S N + S+T+
Sbjct: 297 VLSVVNPDSGSATE 310
>gi|209883689|ref|YP_002287546.1| DNA polymerase III subunit beta [Oligotropha carboxidovorans OM5]
gi|337739249|ref|YP_004630977.1| DNA polymerase III subunit beta [Oligotropha carboxidovorans OM5]
gi|386028268|ref|YP_005949043.1| DNA polymerase III subunit beta [Oligotropha carboxidovorans OM4]
gi|209871885|gb|ACI91681.1| DNA polymerase III, beta subunit [Oligotropha carboxidovorans OM5]
gi|336093336|gb|AEI01162.1| DNA polymerase III subunit beta [Oligotropha carboxidovorans OM4]
gi|336096913|gb|AEI04736.1| DNA polymerase III subunit beta [Oligotropha carboxidovorans OM5]
Length = 372
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 101/314 (32%), Positives = 184/314 (58%), Gaps = 14/314 (4%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQIT-TYTA-VG 62
V E+ +L L V +VE++N +PIL N+L+ + K+S +TD ++++T T A +
Sbjct: 3 VTVERAQLLKSLGHVHRVVERRNTIPILGNVLIRAENAKLSLKATDLDLEVTETLPAEIA 62
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPI 120
G S+ V A F DI+R LP+ ++ + + + + I++G+S+FTLQTL ++P
Sbjct: 63 TGGSTT---VPAHMFYDIVRKLPDGSQIVLESDGERAVLAIRAGRSRFTLQTLPESDFPD 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSD 176
+ + FTL+ +K +++ F+I+ ++ RYYLNG+ L S ++ + AV++D
Sbjct: 120 LAAG-EMTHSFTLTAADVKRLIDRTQFAISTEETRYYLNGIYLHAAGSAAEQTLRAVATD 178
Query: 177 GHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEI 236
GHRL + + + K + +I+PRKTV +QRL+E+ E + +++S +I+ +N+ +
Sbjct: 179 GHRLAQFDLPLPKSAAGMPGVIVPRKTVGEVQRLIEDTEAEIAIELSQAKIRFTLANVVL 238
Query: 237 ISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
SKLIDG F DY VI EK +V++ ++ R+S IS+++ + V+L + K+
Sbjct: 239 TSKLIDGTFPDYGRVIPQNNEKELVVDKRDFEAAVDRVSTISSERGRAVKLALSAG--KL 296
Query: 297 TVSSSNREKASSTD 310
+S N + S+T+
Sbjct: 297 VLSVVNPDSGSATE 310
>gi|152977690|ref|YP_001343319.1| DNA polymerase III subunit beta [Actinobacillus succinogenes 130Z]
gi|150839413|gb|ABR73384.1| DNA polymerase III, beta subunit [Actinobacillus succinogenes 130Z]
Length = 366
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 177/307 (57%), Gaps = 8/307 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ +V+ E +L PLQ V ++ + +P+L+N+L+ ++++ TD EV+++T
Sbjct: 1 MQFIVSREN--LLKPLQQVCGVLSSRPNVPVLNNVLLQIEGDRLTITGTDLEVELSTQAQ 58
Query: 61 V-GYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP 119
+ +G + I A+KF+DI RSLPE +T+ E ++S ++KF L T A+EYP
Sbjct: 59 LNSHGEGTFTI--PAKKFLDICRSLPEDAVITVDFEQDRAIVRSSRTKFNLATFPAEEYP 116
Query: 120 IMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+T + + + +FT+SQ T++ ++ FS+A D RY+LNG+ + + V++DGHR
Sbjct: 117 NLT-DWQSEVDFTVSQATMRRLIEATQFSMANNDARYFLNGMKFETEGNLLRTVATDGHR 175
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLE-NKENPVELKISNNQIKIIFSNIEIIS 238
L + +++ + S +I+PRK V L RLL+ E P ++I N ++ ++ S
Sbjct: 176 LAVCTIELEQDLQNHS-VILPRKGVLELARLLDATSEQPARVQIGTNNFRVELGSVVFTS 234
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG+F DY+ V+ + + L +S R SI+S++K++ VRL + N L IT
Sbjct: 235 KLIDGRFPDYRRVLPRNANRILESDWENLKQSFVRASILSSEKVRTVRLELNQNQLTITA 294
Query: 299 SSSNREK 305
+ +E+
Sbjct: 295 KNPEQEE 301
>gi|308095428|ref|ZP_07663276.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus Peru-466]
gi|308087823|gb|EFO37518.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus Peru-466]
Length = 287
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 169/280 (60%), Gaps = 2/280 (0%)
Query: 26 KNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLP 85
+ LPIL N+L+ +S +TD EV++ + + + +I V +RKF+DI R LP
Sbjct: 4 RPTLPILGNLLIKVEENVLSMTATDLEVELVSKVTLEGDFEAGSITVPSRKFLDICRGLP 63
Query: 86 ETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMV 145
+ +T +E + ++SG+S+F+L TL A ++P + + + + E +LSQ L+ +++
Sbjct: 64 DDAIITFVLEGDRVQVRSGRSRFSLATLPANDFPNIE-DWQSEVEVSLSQADLRTLIDKT 122
Query: 146 YFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVF 205
FS+A QD+RYYLNG+L + +V++DGHR+ Q + F+ II+PRK V
Sbjct: 123 QFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVSQTQLGADFAQ-KQIIVPRKGVQ 181
Query: 206 TLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVISNKYEKSFLVNRN 265
L +L++ E PV L+I ++ ++ +N SKL+DG+F DY+ V+ K+ + + +
Sbjct: 182 ELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTSKLVDGRFPDYRRVLPQHTNKTLIASCD 241
Query: 266 KLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREK 305
+L ++ R +I+SN+K +GVR+ + + ++IT ++ ++K
Sbjct: 242 ELRQAFSRAAILSNEKFRGVRVNLAGSEMRITANNPEQKK 281
>gi|268628277|gb|ACZ13537.1| DNA polymerase III beta chain [Xenorhabdus vietnamensis]
Length = 276
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 150/235 (63%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
V ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 VPARKFFDIWRGLPDGAEISVELDGDRILVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L + + + V++DGHRL ++I +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMHIGQNL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ +N ++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDNLLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 197 LPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEA 251
>gi|406978787|gb|EKE00680.1| hypothetical protein ACD_21C00293G0009 [uncultured bacterium]
Length = 370
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 172/300 (57%), Gaps = 2/300 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAV-GYGNSS 67
+ ++L PLQ+V +VE++ LPILS+I++ ++ + TD EV++ +
Sbjct: 8 RESLLKPLQLVAGVVERRQTLPILSHIILIIKDNLLTLVGTDLEVELCGLVPLENPMKKP 67
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I + +K +DI R+LPE + + +N + + SGKS+F L +L K++P K
Sbjct: 68 TEITLPGKKLLDICRALPENSTLELTGDNGRIVVSSGKSRFVLTSLPTKDFPRSPEQEKM 127
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
EF ++Q +L+ ++ F+I QQD+R YLNGLL + +I A+++DGHRL +
Sbjct: 128 -LEFGITQNSLRKLIEKTSFAIPQQDVRQYLNGLLFEVKDGSIQALATDGHRLAMSSITA 186
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
SS + +I+PRK V L RLLE + V + +NN +++ ++ + SKLI GKF +
Sbjct: 187 SVVDSSFAQVIVPRKGVLELMRLLEPSDEEVLVSFNNNFVRVKGNDFILTSKLISGKFPN 246
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKAS 307
Y +I + EK +N + ++L R+ I+SN+ + R ++P+ L +T ++ +E+A+
Sbjct: 247 YNKIIPKRGEKHLEINCTEFKQALTRVGILSNELFRSARFQLRPDTLTLTTNNPEQEEAA 306
>gi|420383018|ref|ZP_14882441.1| DNA polymerase III, beta subunit, partial [Shigella dysenteriae
225-75]
gi|391297630|gb|EIQ55677.1| DNA polymerase III, beta subunit, partial [Shigella dysenteriae
225-75]
Length = 292
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 143/230 (62%), Gaps = 2/230 (0%)
Query: 77 FIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQK 136
F DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + + + EFTL Q
Sbjct: 1 FFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQSEVEFTLPQA 59
Query: 137 TLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSD 196
T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I + S S
Sbjct: 60 TMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHS- 118
Query: 197 IIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVISNKY 256
+I+PRK V L R+L+ +NP+ ++I +N I+ + SKL+DG+F DY+ V+
Sbjct: 119 VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNP 178
Query: 257 EKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 179 DKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 228
>gi|71279230|ref|YP_266784.1| DNA polymerase III subunit beta [Colwellia psychrerythraea 34H]
gi|71144970|gb|AAZ25443.1| DNA polymerase III, beta subunit [Colwellia psychrerythraea 34H]
Length = 367
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 100/280 (35%), Positives = 164/280 (58%), Gaps = 1/280 (0%)
Query: 19 VISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFI 78
V VE+K+ LPILSNIL + + ++ +TD E+++ Y + I + ARK +
Sbjct: 17 VSGAVERKSTLPILSNILFEVSGQSLTLTATDLELEMVAYAEIQNQGDDGKITIPARKLL 76
Query: 79 DILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTL 138
DI +SLPE+ ++ + ++ + + SG+SK++L TL A ++P + K D EF L +
Sbjct: 77 DICKSLPESSLISFEVIDETIKLSSGRSKYSLSTLPAVDFPNIE-EWKGDVEFQLLKSEF 135
Query: 139 KCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDII 198
++ +FS+A QD+RYYLNG+ + + I +V++DGHRL +++ + +I
Sbjct: 136 LRLIESTHFSMANQDVRYYLNGMSIESEGNEIRSVATDGHRLAICKISNETLALPARQVI 195
Query: 199 IPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVISNKYEK 258
+PRK + + RLL + V++ + +N I+II S SKL+DG+F DY+ V+ +K
Sbjct: 196 VPRKGILEIIRLLAPVDEAVQVFLGSNHIRIIDSEFSFTSKLVDGRFPDYRRVLPRNGDK 255
Query: 259 SFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
F N++ L + L R SI+SN+K KGVRL LKIT
Sbjct: 256 VFETNKDALRQVLSRASILSNEKFKGVRLNFSDTNLKITA 295
>gi|334143101|ref|YP_004536257.1| DNA polymerase III subunit beta [Thioalkalimicrobium cyclicum ALM1]
gi|333964012|gb|AEG30778.1| DNA polymerase III, beta subunit [Thioalkalimicrobium cyclicum
ALM1]
Length = 369
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 103/311 (33%), Positives = 174/311 (55%), Gaps = 6/311 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L +N E+ L LQ V +VEK+ +P+L N L+ N + ++ +D E++
Sbjct: 1 MKLTLNREQ--FLKGLQTVAGVVEKRQTMPVLGNFLLQINGQHLTLTGSDLEIESRAQVV 58
Query: 61 VG-YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP 119
+ + +I + A+K + I+RSLPE V + E + + +G+S F L TL A +YP
Sbjct: 59 IDQLEGDAFDITLPAQKLLTIVRSLPEGVSVNLTFEAQRCTLTAGRSSFKLSTLPAADYP 118
Query: 120 IMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+ L S+ + +SQ LK +L F++A QD+R+YLNG+L + + V++DGHR
Sbjct: 119 HLDL-SRVELALQMSQAQLKQMLAQTSFAMASQDVRFYLNGMLFDVSPQALRLVATDGHR 177
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L+ + D + +I+PRK + L +LL+ ++ VEL + N + + ++I K
Sbjct: 178 LSTTALEADFASLTPMQVIVPRKGIVELGKLLQASDDLVELAFAKNYLTVKLADIVFTCK 237
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LI+G++ D++ VI E + +R L LQR +I+SN++ KGVR+VI N L TV
Sbjct: 238 LIEGRYPDFRRVIPQNNEVAVQTDRELLRAILQRAAILSNERFKGVRMVIDNNLL--TVH 295
Query: 300 SSNREKASSTD 310
+ N E+ S +
Sbjct: 296 AQNTEQDESNE 306
>gi|414164414|ref|ZP_11420661.1| DNA polymerase III, beta subunit [Afipia felis ATCC 53690]
gi|410882194|gb|EKS30034.1| DNA polymerase III, beta subunit [Afipia felis ATCC 53690]
Length = 371
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 103/314 (32%), Positives = 185/314 (58%), Gaps = 15/314 (4%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQIT-TYTA-VG 62
V E+ +L L V +VE++N +PIL N+L+ +S ++S +TD ++++T T A V
Sbjct: 3 VTVERAQLLKSLGHVHRVVERRNTIPILGNVLIRADS-RLSLKATDLDLEVTETLPAEVA 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPI 120
G S+ V A F DI+R LP+ ++ + + + + I++G+S+FTLQTL ++P
Sbjct: 62 TGGSTT---VPAHMFYDIVRKLPDGSQIVLESDGERSVLAIRAGRSRFTLQTLPESDFPD 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSD 176
+ + FTL+ +K +++ F+I+ ++ RYYLNG+ L S +++ + AV++D
Sbjct: 119 LAAG-EMTHSFTLTAADVKRLIDRTQFAISTEETRYYLNGIYLHAAGSAKEQTLRAVATD 177
Query: 177 GHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEI 236
GHRL + + + K +I+PRKTV +QRL+E+ E + +++S +I+ SN+ +
Sbjct: 178 GHRLAQFDLPLPKSAVGMPGVIVPRKTVGEVQRLIEDTEAEISIELSQGKIRFTLSNVVL 237
Query: 237 ISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
SKLIDG F DY VI EK +V++ ++ R+S IS+++ + V+L + K+
Sbjct: 238 TSKLIDGTFPDYGRVIPQNNEKELVVDKRDFEAAVDRVSTISSERGRAVKLALSAG--KL 295
Query: 297 TVSSSNREKASSTD 310
+S N + S+T+
Sbjct: 296 VLSVVNPDSGSATE 309
>gi|268628311|gb|ACZ13554.1| DNA polymerase III beta chain [Xenorhabdus bovienii]
Length = 276
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 151/235 (64%), Gaps = 2/235 (0%)
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
+ ARKF DI R LP+ ++++ ++ + ++SG+S+F+L TL A ++P + + + + EF
Sbjct: 19 IPARKFFDIWRGLPDGAEISVELDGDRILVRSGRSRFSLSTLPASDFPNLD-DWQSEVEF 77
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+L Q TLK ++ FS+A QD+RYYLNG+L +++ + V++DGHRL +NI +
Sbjct: 78 SLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEEEELRTVATDGHRLAVCSMNIGQNL 137
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
S S +I+PRK V L RLL+ ++ ++L+I +N I+ + SKL+DG+F DY+ V
Sbjct: 138 PSHS-VIVPRKGVIELMRLLDGGDSLLQLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRV 196
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ +K+ N + L ++ R +I+SN+K +GVR+ + N L+IT ++ +E+A
Sbjct: 197 LPKNPDKTLEANCDVLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQEEA 251
>gi|50083299|ref|YP_044809.1| DNA polymerase III beta [Acinetobacter sp. ADP1]
gi|49529275|emb|CAG66987.1| DNA polymerase III, beta chain [Acinetobacter sp. ADP1]
Length = 382
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 101/312 (32%), Positives = 173/312 (55%), Gaps = 14/312 (4%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN--S 66
K ++L+ L V+ VE+++ L ILSN+ + N++ ++ +D EV++ T + G
Sbjct: 7 KESLLNVLSHVVGAVERRHTLNILSNVKIQANAQALTITGSDLEVELVASTTLAEGACIE 66
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
+ V ARK +DI +SLP + + I E++ +KSG S+F L TL A++YP++T S
Sbjct: 67 AGETTVPARKLVDICKSLPSAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYPLLTTES 126
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
+ ++Q+ LK + F++A QD+R+YL G LL + + AV++DGHRL +V
Sbjct: 127 SQGTQVQVTQRELKRLFEKTSFAMAVQDVRFYLTGTLLEIDQNQLRAVTTDGHRLALCEV 186
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFS-----------NI 234
I+PRK V LQRLL +++ + L I + + + +
Sbjct: 187 QASSTAMQAVQAIVPRKAVGELQRLLSIEDDQLSLLIGRELLNVTINIANRDKEQHPITV 246
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+KLIDGKF DY+ VI +K + + +SLQR++I+SN+KL+GV L P+ L
Sbjct: 247 RFTTKLIDGKFPDYRRVIPRGGDKHVQIAHDVFKQSLQRVAILSNEKLRGVFLNFNPDVL 306
Query: 295 KITVSSSNREKA 306
++ ++ +++A
Sbjct: 307 QLRANNPEQDEA 318
>gi|75674201|ref|YP_316622.1| DNA polymerase III subunit beta [Nitrobacter winogradskyi Nb-255]
gi|74419071|gb|ABA03270.1| DNA polymerase III, beta subunit [Nitrobacter winogradskyi Nb-255]
Length = 372
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 175/312 (56%), Gaps = 10/312 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ +L L V +VE++N +PIL N+LV + K+S +TD ++++T A G
Sbjct: 3 VTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAKLSLKATDLDLEVTETLAAETG 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPIMT 122
+ V A F DI+R LP+ ++ + + + I++G+S+FTLQTL ++P +
Sbjct: 63 TVG-STTVPAHMFYDIIRKLPDGAQIVLEGDGDRSVLTIRAGRSRFTLQTLPENDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGH 178
+ FTL+ LK +++ F+I+ ++ RYYLNG+ L + + V++DGH
Sbjct: 122 AG-EMTHSFTLAAADLKRLIDRTQFAISTEETRYYLNGIYLHGAGTANNATLRGVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL + + K +IIPRKTV +QRL+E+ E + +++S +I+ N+ + S
Sbjct: 181 RLAQLDLALPKGAEGMPGVIIPRKTVGEVQRLIEDSEAEIGIELSQGKIRFTLGNVVLTS 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY VI +K +V++ ++ R+S IS+++ + V+L + K+ +
Sbjct: 241 KLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAG--KLVL 298
Query: 299 SSSNREKASSTD 310
S +N + S+T+
Sbjct: 299 SVTNPDSGSATE 310
>gi|289207189|ref|YP_003459255.1| DNA polymerase III subunit beta [Thioalkalivibrio sp. K90mix]
gi|288942820|gb|ADC70519.1| DNA polymerase III, beta subunit [Thioalkalivibrio sp. K90mix]
Length = 367
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 93/303 (30%), Positives = 166/303 (54%), Gaps = 3/303 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNI-LVCKNSEKISFLSTDTEVQITTYTAVGYGNS 66
++ A+ LQ ++ EK+ +PIL N+ L I +TD E+ A G
Sbjct: 6 QREAMTDALQRIVGAAEKRLTMPILGNVRLRPDERGGIRMDTTDLELAWQG-EAAGTIPG 64
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSK 126
++ V+ RK +D++++ PE ++ I+ + M + S+F+L TL ++P S
Sbjct: 65 ECDVTVSVRKLLDVVKAAPEDSEIRATIDGERMSVGFAGSRFSLATLPGADFPDWESKSS 124
Query: 127 YDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVN 186
++ + Q L+ +L FS+AQQD+RYYL GLLL ++ AV++DGHRL +
Sbjct: 125 -EWTLDIPQNRLRRLLEATMFSMAQQDVRYYLQGLLLVASGHSLRAVATDGHRLALAEAE 183
Query: 187 IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFL 246
+D+ + I+PRKT+ L+R L + + PV + S +Q+ N + SK+I+G+F
Sbjct: 184 LDQAIDGRLEKIVPRKTIAELRRNLSDDDVPVRVGFSEDQVLFDLGNAVLRSKVIEGRFP 243
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
DY+ VI + V R +L ++L R+SI+++DK +GVR+ + ++ +++RE+A
Sbjct: 244 DYERVIPADLPATLTVERERLKQALARVSIVASDKYRGVRMTLGDEGCQVMTHNADREEA 303
Query: 307 SST 309
+
Sbjct: 304 QES 306
>gi|431929466|ref|YP_007242512.1| DNA polymerase III subunit beta [Thioflavicoccus mobilis 8321]
gi|431827769|gb|AGA88882.1| DNA polymerase III, beta subunit [Thioflavicoccus mobilis 8321]
Length = 368
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 170/301 (56%), Gaps = 12/301 (3%)
Query: 12 ILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSIN-- 69
+L L I ++EK++ LPIL LV E++ +STD E++I T+ N++I+
Sbjct: 10 LLTALGYAIGVIEKRSTLPILGYFLVRATDERLEIVSTDLEIEIETFA-----NATIDDE 64
Query: 70 --IIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
++ RK DI RSLP+ ++ I E+ I +G+S+F+L T ++YP + L
Sbjct: 65 GACVIPGRKLFDICRSLPKESQLKIRTEDGKAGITAGRSRFSLLTFTEQDYPRLGLTGIR 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
D E L +TL+ +++ FS+AQQD+RYYLNGL ++ II V++DGHRL+ +V +
Sbjct: 125 D-EMELDVETLRLLIDKTSFSMAQQDVRYYLNGLFVACANDKIIGVTTDGHRLSKAEVTV 183
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLL--ENKENPVELKISNNQIKIIFSNIEIISKLIDGKF 245
+ + +++IIP K V L+R+L ++E V L + + NI +KLID K+
Sbjct: 184 EGTNGNETEVIIPGKAVQELKRILSGSDRETRVSLAFREGLVSLTIGNIVFHTKLIDAKY 243
Query: 246 LDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREK 305
DY+ VI + +V++ L +L R+S IS DK +GV + L++ +S +E
Sbjct: 244 PDYERVIPQNLTRRAIVDKELLRSALVRMSAISYDKYRGVEFIFDEGTLRLVSKNSEQEI 303
Query: 306 A 306
A
Sbjct: 304 A 304
>gi|407783517|ref|ZP_11130716.1| DNA polymerase III subunit beta [Oceanibaculum indicum P24]
gi|407201523|gb|EKE71522.1| DNA polymerase III subunit beta [Oceanibaculum indicum P24]
Length = 372
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 175/312 (56%), Gaps = 10/312 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L+++ + A+L PL V S+VEK+N +PILSN+L+ +S++++ +TD ++ +
Sbjct: 1 MKLIID--RAALLKPLAHVQSVVEKRNTIPILSNVLLRADSDRLALTATDMDIDVVEEVG 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIE--NKHMFIKSGKSKFTLQTLDAKEY 118
VAA DI+R LP+ ++ + + + +++G+S F+L TL +E+
Sbjct: 59 AEVSQPGATT-VAAHTLYDIVRKLPDGAQIELTEDEGGNRLTVRAGRSTFSLATLPTEEF 117
Query: 119 PIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNII----AVS 174
P ++ + F L LK +++ F+I+ ++ RYYLNG+ L N + AV+
Sbjct: 118 PALS-DGDLPHNFMLQAGELKAMIDRTRFAISTEETRYYLNGIYLHAASNNGVPVLRAVA 176
Query: 175 SDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNI 234
+DGHRL ++ + + +I+PRK V L++LLE+ E + + +S +++ F ++
Sbjct: 177 TDGHRLARVEMPLPDGAAGMPGVIVPRKAVGELRKLLEDSEGDIRVALSETKLRFQFGDV 236
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+ +KLIDG F DY+ VI +K+ V R + ++ R++ IS +K + V+L ++ L
Sbjct: 237 TLTTKLIDGTFPDYERVIPTGNDKTLQVGRKEFAEAVDRVATISTEKSRAVKLSLQDGML 296
Query: 295 KITVSSSNREKA 306
++ +S A
Sbjct: 297 VLSATSPENGTA 308
>gi|386399242|ref|ZP_10084020.1| DNA polymerase III, beta subunit [Bradyrhizobium sp. WSM1253]
gi|385739868|gb|EIG60064.1| DNA polymerase III, beta subunit [Bradyrhizobium sp. WSM1253]
Length = 372
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 176/312 (56%), Gaps = 10/312 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ +L L V +VE++N +PIL N+LV + K+S +TD ++++T A
Sbjct: 3 VTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAKLSLKATDLDLEVTETLAAETA 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPIMT 122
+ + V A F DI+R LP+ ++ + + + I++G+S+FTLQTL ++P +
Sbjct: 63 TAG-STTVPAHMFYDIVRKLPDGSQIVLEADGDRAVLAIRAGRSRFTLQTLPENDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGH 178
F+L+ K +K +++ F+I+ ++ RYYLNG+ L S + + V++DGH
Sbjct: 122 AGD-MSHSFSLAAKDVKRLIDRTQFAISTEETRYYLNGIYLHAAGSAKAATLRGVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL + K +I+PRKTV +QRL+E+ E V +++S +I+ N+ + S
Sbjct: 181 RLAQLDLVQPKGAEGMPGVIVPRKTVGEVQRLIEDNEAEVTIELSQAKIRFTIGNVVLTS 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY VI +K +V++ ++ R+S IS+++ + V+L + P K+ +
Sbjct: 241 KLIDGTFPDYGRVIPQGNDKELVVDKKDFENAVDRVSTISSERGRAVKLSLSPG--KLVL 298
Query: 299 SSSNREKASSTD 310
S +N + S+T+
Sbjct: 299 SVTNPDSGSATE 310
>gi|386816604|ref|ZP_10103822.1| DNA polymerase III, beta subunit [Thiothrix nivea DSM 5205]
gi|386421180|gb|EIJ35015.1| DNA polymerase III, beta subunit [Thiothrix nivea DSM 5205]
Length = 369
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 168/305 (55%), Gaps = 7/305 (2%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ +L LQ + +EK++ PIL N+L+ + + TD E++I T V G
Sbjct: 7 REHLLESLQSTLGAIEKRHTAPILENVLLRIAGNQSFWRGTDLELEIATQAPVMDGADG- 65
Query: 69 NIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I + ARK DI +SLP V + I ++K I +G+S+F L TL A E+P + +
Sbjct: 66 DITLPARKLADICKSLPAESIVNLEIQDDKRAKITAGRSRFELATLPASEFPDLEDIGEV 125
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY-YQVN 186
F +++ LK +L+ V F++A QD+RYYLNG+LL + + V++DGHRL +Q +
Sbjct: 126 -HTFGIAENALKHLLDSVAFAMANQDVRYYLNGMLLEVNPEGVRTVATDGHRLALCFQTS 184
Query: 187 IDKKFSSCSDIIIPRKTVFTLQRLLENKEN-PVELKISNNQIKIIFSNIEIISKLIDGKF 245
+IIPRK V L RLL PV+++ S N +++ N+ +KL+DG++
Sbjct: 185 EMPDVEQARQLIIPRKGVLELARLLRGDSQVPVQVQASQNHLRVQLDNLRFTTKLVDGRY 244
Query: 246 LDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREK 305
DY+ I + ++R L R++I+SN+K +GVRL + N L+ V + N E+
Sbjct: 245 PDYRAAIPGGGQIQVDLDRKTFRDMLSRVAILSNEKFRGVRLSLSENLLQ--VQAHNPEQ 302
Query: 306 ASSTD 310
+TD
Sbjct: 303 EVATD 307
>gi|149191877|ref|ZP_01870111.1| DNA polymerase III subunit beta [Vibrio shilonii AK1]
gi|148834269|gb|EDL51272.1| DNA polymerase III subunit beta [Vibrio shilonii AK1]
Length = 320
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 160/258 (62%), Gaps = 2/258 (0%)
Query: 49 TDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKF 108
TD EV++ + + + ++ V +RKF+DI R LP+ +TI +E + ++SG+S+F
Sbjct: 1 TDLEVELVSKVTLESEFEAGSVTVPSRKFLDICRGLPDDSTITIVLEGDRVQVRSGRSRF 60
Query: 109 TLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKK 168
+L TL A ++P + + + + T++Q LK ++ FS+A QD+RYYLNG+L +
Sbjct: 61 SLSTLPASDFPNIE-DWQQEVAVTVTQAELKSLIEKTQFSMANQDVRYYLNGMLFELDQN 119
Query: 169 NIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIK 228
+ +V++DGHR+ V+++ F + II+PRK V L +LL+ E PV L+I ++ I+
Sbjct: 120 TLRSVATDGHRMAVALVSLEGSFDN-KQIIVPRKGVQELSKLLDAPEQPVTLQIGSSNIR 178
Query: 229 IIFSNIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLV 288
+N SKL+DG+F DY+ V+ +K+ N ++L ++ R +I+SN+K +GVR+
Sbjct: 179 AEVNNFVFTSKLVDGRFPDYRRVLPQNTDKTLEANCDELRQAFSRAAILSNEKFRGVRVN 238
Query: 289 IKPNYLKITVSSSNREKA 306
+ N ++IT ++ +E+A
Sbjct: 239 LDQNEMRITANNPEQEEA 256
>gi|414176987|ref|ZP_11431216.1| DNA polymerase III, beta subunit [Afipia broomeae ATCC 49717]
gi|410887140|gb|EKS34952.1| DNA polymerase III, beta subunit [Afipia broomeae ATCC 49717]
Length = 372
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/314 (30%), Positives = 179/314 (57%), Gaps = 14/314 (4%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAV--G 62
V E+ +L L V +VE++N +PIL N+L+ + ++S +TD ++++T A G
Sbjct: 3 VTVERAQLLKSLSHVHRVVERRNTIPILGNVLIRADKSRLSLKATDLDLEVTETLAAETG 62
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPI 120
G S+ V A F DI+R LP+ ++ + + + I++G+S+FTLQTL ++P
Sbjct: 63 TGGSTT---VPAHMFYDIVRKLPDGSQIVLEGDGDRSVLAIRAGRSRFTLQTLPESDFPD 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSD 176
+ FTL+ +K +++ F+I+ ++ RYYLNG+ L + + + AV++D
Sbjct: 120 LAAGD-MTHSFTLAAADMKRLIDRTQFAISTEETRYYLNGIYLHAAGTAKAATLRAVATD 178
Query: 177 GHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEI 236
GHRL + + K +I+PRKTV +QRL+E+ E +++++S +I+ ++ +
Sbjct: 179 GHRLAQVDLPLPKSADGMPGVIVPRKTVGEVQRLIEDNEAELKIELSQGKIRFTIGDVVL 238
Query: 237 ISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
SKLIDG F DY VI +K +V++ ++ R+S IS+++ + V+L + K+
Sbjct: 239 TSKLIDGTFPDYGRVIPQNNDKELIVDKKDFEAAVDRVSTISSERGRAVKLALSAG--KL 296
Query: 297 TVSSSNREKASSTD 310
+S +N + S+T+
Sbjct: 297 VLSVTNPDSGSATE 310
>gi|350552526|ref|ZP_08921725.1| DNA polymerase III, beta subunit [Thiorhodospira sibirica ATCC
700588]
gi|349793875|gb|EGZ47701.1| DNA polymerase III, beta subunit [Thiorhodospira sibirica ATCC
700588]
Length = 388
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 171/299 (57%), Gaps = 7/299 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L ++ E +L PL V +E K L +LSN+L+ ++ I TD EV++ A
Sbjct: 20 MKLAISRE--TLLGPLTQVFGAIEAKQTLQVLSNVLIKAEADHIQLTGTDLEVELVASFA 77
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + ARK +DI +SLP ++ + +E I GKS+F+L TL ++P+
Sbjct: 78 HPVDTPGMATL-PARKLLDICKSLPANTEIRLTVEGNKATIIGGKSRFSLATLPVDDFPV 136
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ D + +++K K +L F++A QD+RYYLNG+LL +K I V++DGHRL
Sbjct: 137 LDEIEAND-HWQMNEKEFKHLLQGTAFAMANQDVRYYLNGILLETRKNLIRCVATDGHRL 195
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLL-ENKENPVELKISNNQIKIIFSNIEIISK 239
+ + + + IIPRK V L RLL N+E+ +E+ + +N +++ F + K
Sbjct: 196 SLCDLPKEIETEEVRQAIIPRKGVQELLRLLSPNEESHIEVHLGSNHLRLHFPGLRFTCK 255
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLK--GVRLVIKPNYLKI 296
LIDG+F DY+ VI KY++ V++ L+++L+R+ I+ DK + G+RLVI N LK+
Sbjct: 256 LIDGRFPDYERVIPRKYDQILNVDKTALIKALKRMLILYTDKTRVCGIRLVISENLLKL 314
>gi|374571623|ref|ZP_09644719.1| DNA polymerase III, beta subunit [Bradyrhizobium sp. WSM471]
gi|374419944|gb|EHQ99476.1| DNA polymerase III, beta subunit [Bradyrhizobium sp. WSM471]
Length = 372
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 176/312 (56%), Gaps = 10/312 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ +L L V +VE++N +PIL N+LV + K+S +TD ++++T A
Sbjct: 3 VTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENTKLSLKATDLDLEVTETLAAETA 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPIMT 122
+ + V A F DI+R LP+ ++ + + + I++G+S+FTLQTL ++P +
Sbjct: 63 TAG-STTVPAHMFYDIVRKLPDGSQIVLEADGDRAVLAIRAGRSRFTLQTLPENDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGH 178
F+L+ K +K +++ F+I+ ++ RYYLNG+ L S + + V++DGH
Sbjct: 122 AGD-MSHSFSLAAKDVKRLIDRTQFAISTEETRYYLNGIYLHAAGSAKAATLRGVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL + K +I+PRKTV +QRL+E+ E V +++S +I+ N+ + S
Sbjct: 181 RLAQLDLVQPKGAEGMPGVIVPRKTVGEVQRLIEDNEAEVTIELSQAKIRFTIGNVVLTS 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY VI +K +V++ ++ R+S IS+++ + V+L + P K+ +
Sbjct: 241 KLIDGTFPDYGRVIPQGNDKELVVDKKDFENAVDRVSTISSERGRAVKLSLSPG--KLVL 298
Query: 299 SSSNREKASSTD 310
S +N + S+T+
Sbjct: 299 SVTNPDSGSATE 310
>gi|254502919|ref|ZP_05115070.1| DNA polymerase III, beta subunit [Labrenzia alexandrii DFL-11]
gi|222438990|gb|EEE45669.1| DNA polymerase III, beta subunit [Labrenzia alexandrii DFL-11]
Length = 375
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/309 (33%), Positives = 177/309 (57%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L L V +VE++N +PILSN+L+ + ++ +TD +++I T
Sbjct: 9 ERTDLLKSLTHVHRVVERRNTIPILSNVLLRADGGALNLKATDLDLEIV-ETVPAMIEMP 67
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A F DI+R LPE +V + ++ + I++G+SKFTLQ L ++P +T
Sbjct: 68 GATTVPAHMFFDIVRKLPEGSQVVLETTGDDTTLEIRAGRSKFTLQMLPETDFPDLTAGD 127
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGHRLT 181
+ FTLS ++ +++ F+I+ ++ RYYLNG+ L + + AV++DGHRL
Sbjct: 128 -FSHGFTLSASDIRKLIDTTQFAISTEETRYYLNGIYLHTVDAANGQQFRAVATDGHRLA 186
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
+V+ S II+PRKTV +Q+LLEN E V++++S+ +I+I + + SKLI
Sbjct: 187 QAEVSAPSGSSGMPGIIVPRKTVGEIQKLLENPEADVQIELSDTKIRITTDTVVLTSKLI 246
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY VI +K V+R++ ++ R+S IS+++ + V+L + L +TV +
Sbjct: 247 DGTFPDYGRVIPQGNDKEMRVDRDEFKEAVDRVSTISSERGRAVKLALGDGRLVLTV--N 304
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 305 NPDSGSATE 313
>gi|381167253|ref|ZP_09876461.1| DNA polymerase III, beta-subunit [Phaeospirillum molischianum DSM
120]
gi|380683561|emb|CCG41273.1| DNA polymerase III, beta-subunit [Phaeospirillum molischianum DSM
120]
Length = 372
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 180/318 (56%), Gaps = 12/318 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L + E+ A+L L V S+VE++ +PILSN+ + S ++S +TD ++ I
Sbjct: 1 MKLTI--ERAALLKSLAHVQSVVERRTTIPILSNVKLEGRSGRLSLNATDMDLDIAETVP 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEY 118
A F DI+R LPE +V I ++ M ++SG+SKF+L L +++
Sbjct: 59 ADISQPGATT-APAHTFYDIVRKLPEGSQVEIEFKPDDGQMTLRSGRSKFSLSCLPVEDF 117
Query: 119 PIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIAVS 174
P+++ ++ F FTL+ LK +++ F+I+ ++ RYYLNG+ L + + AV+
Sbjct: 118 PVLS-GGEFPFSFTLTSSELKALIDRTRFAISTEETRYYLNGIYLHAATGSDGAMLRAVA 176
Query: 175 SDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNI 234
+DGHRL +V + + S IIIPRKTV +++L++ + + + +S ++K F++
Sbjct: 177 TDGHRLARAEVTMPEGASGMPGIIIPRKTVAEVRKLIDETDGEITVSLSETKLKFAFADA 236
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
E+ SKLIDG F DY+ VI +K V+ +++ R+S IS +K + ++L I+
Sbjct: 237 ELTSKLIDGTFPDYERVIPTDNDKVLDVDCKSFAQAVDRVSAISTEKSRAIKLSIERG-- 294
Query: 295 KITVSSSNREKASSTDLI 312
T+S+S+ E S+ + I
Sbjct: 295 TATLSASSPESGSAVEEI 312
>gi|350563761|ref|ZP_08932581.1| DNA polymerase III, beta subunit [Thioalkalimicrobium aerophilum
AL3]
gi|349778282|gb|EGZ32638.1| DNA polymerase III, beta subunit [Thioalkalimicrobium aerophilum
AL3]
Length = 369
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/311 (32%), Positives = 174/311 (55%), Gaps = 6/311 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L +N E L LQ+V +VEK+ +PIL N L+ N ++ +D E++
Sbjct: 1 MKLTLNREH--FLKGLQIVAGVVEKRQTMPILGNFLLQINGHHLTLTGSDLEIESRAQVT 58
Query: 61 VG-YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP 119
+ + +I + A+K + I+RSLPE V++ E + + +G+S F L TL A +YP
Sbjct: 59 IDEIEGEAFDITLPAQKLLTIVRSLPEGISVSLDFEAQRCTLTAGRSAFKLSTLPAADYP 118
Query: 120 IMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+ L S+ + +SQ LK +L F++A QD+R+YLNG+L + + V++DGHR
Sbjct: 119 HLDL-SRVEVALQMSQAQLKQMLAQTSFAMASQDVRFYLNGMLFDVSPQALRLVATDGHR 177
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L+ + D + +I+PRK + L +LL+ + VEL + N + + ++ K
Sbjct: 178 LSTAALEADFASLTPMQVIVPRKGIVELAKLLQASDELVELAFAKNYLTVKLADTVFTCK 237
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LI+G++ D++ VI + E + +R + LQR +I+SN++ KGVR+VI+ N L TV
Sbjct: 238 LIEGRYPDFRRVIPTQNEVQVITDRELMRAILQRAAILSNERFKGVRMVIENNLL--TVH 295
Query: 300 SSNREKASSTD 310
+ N E+ S +
Sbjct: 296 AQNTEQDESNE 306
>gi|85713965|ref|ZP_01044954.1| DNA polymerase III subunit beta [Nitrobacter sp. Nb-311A]
gi|85699091|gb|EAQ36959.1| DNA polymerase III subunit beta [Nitrobacter sp. Nb-311A]
Length = 372
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 176/312 (56%), Gaps = 10/312 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ +L L V +VE++N +PIL N+LV + K+S +TD ++++T + G
Sbjct: 3 VTVERAQLLKSLSHVHRVVERRNTIPILGNVLVRAENAKLSLKATDLDLEVTETLSAETG 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPIMT 122
+ V A F DI+R LPE ++ + + + I++G+S+FTLQTL ++P +
Sbjct: 63 TIG-STSVPAHMFYDIVRKLPEGAQILLEGDGDRSVLAIRAGRSRFTLQTLPENDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGH 178
+ FTL+ LK +++ F+I+ ++ RYYLNG+ L + + + V++DGH
Sbjct: 122 AG-EMTHAFTLAAADLKRLIDRTQFAISTEETRYYLNGIYLHGAGNAKSATLRGVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL + + K +IIPRKTV +QRL+E+ E + +++S +I+ N+ + S
Sbjct: 181 RLAQLDLALPKGAEGMPGVIIPRKTVGEVQRLIEDSEAEIGIELSQGKIRFTIGNVVLTS 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY VI +K +V++ ++ R+S IS+++ + V+L + K+ +
Sbjct: 241 KLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAG--KLVL 298
Query: 299 SSSNREKASSTD 310
S +N + S+T+
Sbjct: 299 SVTNPDSGSATE 310
>gi|456351579|dbj|BAM86024.1| DNA polymerase III, beta-subunit [Agromonas oligotrophica S58]
Length = 424
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 178/312 (57%), Gaps = 10/312 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ +L L V +VE++N +PIL N+LV + ++S +TD ++++T A
Sbjct: 55 VTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENARLSLRATDLDLEVTETLAAETA 114
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPIMT 122
+ + V A F DI+R LP+ ++ + + + + I++G+SKFTLQTL ++P +
Sbjct: 115 TAG-STTVPAHMFYDIVRKLPDGSQIVLESDGERAVLAIRAGRSKFTLQTLPESDFPDLA 173
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGH 178
+ F + K +K +++ F+I+ ++ RYYLNG+ L + ++ + AV++DGH
Sbjct: 174 AG-EMTHAFGVPAKDIKSLIDRTQFAISTEETRYYLNGIYLHAGGNAKQPTLRAVATDGH 232
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL + + +I+PRKTV +QRL+E+ ++ + +++S +I+ + + S
Sbjct: 233 RLAQVDLPQPAGAAEMPGVIVPRKTVGEVQRLIEDNDSEIRIELSQGKIRFTLGQVVLTS 292
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY VI +K +V++ ++ R+S IS+++ + V+L + P K+ +
Sbjct: 293 KLIDGTFPDYGRVIPQNNDKELVVDKADFAAAVDRVSTISSERGRAVKLALAPG--KLVL 350
Query: 299 SSSNREKASSTD 310
S +N + S+T+
Sbjct: 351 SVTNPDSGSATE 362
>gi|367472948|ref|ZP_09472520.1| DNA polymerase III, beta-subunit [Bradyrhizobium sp. ORS 285]
gi|365274792|emb|CCD84988.1| DNA polymerase III, beta-subunit [Bradyrhizobium sp. ORS 285]
Length = 372
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 179/312 (57%), Gaps = 10/312 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ +L L V +VE++N +PIL N+LV + ++S +TD ++++T A
Sbjct: 3 VTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENARLSLRATDLDLEVTETLAAETA 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPIMT 122
+ + V A F DI+R LP+ ++ + + + + I++G+SKFTLQTL ++P +
Sbjct: 63 TAG-STTVPAHMFYDIVRKLPDGSQIVLESDGERAVLAIRAGRSKFTLQTLPESDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGH 178
+ F + K +K +++ F+I+ ++ RYYLNG+ L + ++ + AV++DGH
Sbjct: 122 AG-EMTHAFGVPAKDIKSLIDRTQFAISTEETRYYLNGIYLHAGGNAKQPTLRAVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL + + +I+PRKTV +QRL+E+ ++ +++++S +I+ + + S
Sbjct: 181 RLAQVDLPQPAGAAEMPGVIVPRKTVGEVQRLIEDNDSEIKIELSQGKIRFTLGQVVLTS 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY VI +K +V++ ++ R+S IS+++ + V+L + P K+ +
Sbjct: 241 KLIDGTFPDYGRVIPQNNDKELVVDKADFAAAVDRVSTISSERGRAVKLALAPG--KLVL 298
Query: 299 SSSNREKASSTD 310
S +N + S+T+
Sbjct: 299 SVTNPDSGSATE 310
>gi|94676682|ref|YP_588601.1| DNA polymerase III, beta subunit [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
gi|94219832|gb|ABF13991.1| DNA polymerase III, beta subunit [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
Length = 370
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 114/304 (37%), Positives = 174/304 (57%), Gaps = 8/304 (2%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V S + ++ LPIL+++L+ + T+ E++I + +
Sbjct: 6 ERKYLLKPLQQVSSRLSGRHQLPILTHLLLQVTENYLILTGTNLEIEIVAKITINKVDKI 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I+V ARK DI RSLPE + I +E M + +G+S+F+L TL A +P + + +
Sbjct: 66 GIIMVCARKLFDICRSLPEDALINITLEGTVMLVIAGRSRFSLMTLPATNFPKIA-DGEN 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL---TYYQ 184
F L TLK ++ FS+A QD+RY LNGLL K + V++DGHRL T Y
Sbjct: 125 QIVFNLPLDTLKKVIQSTQFSMAHQDVRYSLNGLLFEITGKELRTVATDGHRLAACTIY- 183
Query: 185 VNIDKKFSSCSDIIIPRKTVFTLQRLLE--NKENPVELKISNNQIKIIFSNIEIISKLID 242
+N+ K+ CS II+PRK V L R+L+ +N V+L+I +N I+I SN S LI+
Sbjct: 184 INVLKQLPYCS-IIVPRKGVIELLRILDLDYGDNMVKLQICSNNIRIYISNYIFTSNLIE 242
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSN 302
G F DY V+ K V R+ + ++L R++I+SNDK + VRL ++ N LKIT +
Sbjct: 243 GNFPDYHSVLPKNVNKILKVRRDLIKQALTRVAILSNDKFRCVRLYLRKNQLKITAKNLE 302
Query: 303 REKA 306
+E+A
Sbjct: 303 QEEA 306
>gi|212659814|gb|ACJ36983.1| DNA polymerase III subunit beta [Xylella fastidiosa]
Length = 265
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 163/271 (60%), Gaps = 10/271 (3%)
Query: 18 MVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKF 77
+++++VE++ IL+N+L+ N +++S TD EV++ + T + S I + ARK
Sbjct: 1 LIVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESG-EITIPARKI 59
Query: 78 IDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFT----L 133
+I+R+LP+ ++++Y + + +++G+SKFTL TL A ++P S E T +
Sbjct: 60 YEIVRALPDASQLSVYQSDDKITLQAGRSKFTLATLPANDFP-----SIDKIEVTERIII 114
Query: 134 SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSS 193
++ LK ++ F++AQQD+RYYLNGLL + + V++DGHRL + +++
Sbjct: 115 AEVLLKELIERTAFAMAQQDVRYYLNGLLFDLRDTKLRCVATDGHRLALCETELEQAKDL 174
Query: 194 CSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVIS 253
II+PRK V LQRLLE + +EL+I+ N I++ ++ SKLIDG F DY+ VI
Sbjct: 175 KRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVIP 234
Query: 254 NKYEKSFLVNRNKLLRSLQRISIISNDKLKG 284
++ V R L +LQR +I+SN+K +G
Sbjct: 235 IGADREVKVAREVLRDALQRAAILSNEKYRG 265
>gi|78484348|ref|YP_390273.1| DNA polymerase III subunit beta [Thiomicrospira crunogena XCL-2]
gi|78362634|gb|ABB40599.1| DNA polymerase III, beta subunit [Thiomicrospira crunogena XCL-2]
Length = 368
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 173/296 (58%), Gaps = 3/296 (1%)
Query: 12 ILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINII 71
+L LQ V +VEK+ +PIL+NIL N ++ ++D E++ T + + ++
Sbjct: 10 LLKVLQTVGGVVEKRQTMPILANILFQVNQNTLTVTASDLEIETRASTELESSDGDFSVT 69
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
+ A K I I+RSLP+ + + + + +G+S+F L TL A ++P + L ++ + F
Sbjct: 70 LPAVKLISIVRSLPDGLTILLEFDEMRCQLSAGRSRFKLSTLPADDFPTIDL-TQTELSF 128
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+++Q LK I++ F++A QD+R+YLNG+L + + V++DGHRL+ ++ +
Sbjct: 129 SMAQHQLKQIIHNTAFAMASQDVRFYLNGMLFDISNQTLRVVATDGHRLSTCSTLLETEG 188
Query: 192 SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYV 251
+ + I+PRK V LQ+L+ + ++ + ++ N + + F KL+DG+F D+ V
Sbjct: 189 LTATQAILPRKGVLELQKLIGDDDSLIAFSLAKNYLTVQFEETVFTCKLVDGRFPDFNRV 248
Query: 252 ISNKYEKSFLVNRNKLLRS-LQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ ++ +R +LLRS LQR +I+SNDK KG+RL + N L + +S+++++
Sbjct: 249 LPQHNDQLVQTDR-ELLRSLLQRAAILSNDKFKGIRLALSQNLLAVHAQNSDQDES 303
>gi|381150028|ref|ZP_09861897.1| DNA polymerase III, beta subunit [Methylomicrobium album BG8]
gi|380882000|gb|EIC27877.1| DNA polymerase III, beta subunit [Methylomicrobium album BG8]
Length = 366
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 164/288 (56%), Gaps = 2/288 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
++ +L PLQ ++S++EKK + ILSNIL+ ++ ++ TD E+QI + +V G
Sbjct: 7 RDTLLPPLQQIVSVIEKKQTMQILSNILMVIEADTLTMTGTDLEIQIVSRLSV-IGAQPG 65
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
+ ARKF+DI R LP ++ I + + + + +S+F+L L A+ YP S+ +
Sbjct: 66 TATLPARKFLDICRLLPPNTEIRIEQQGDMVKLATPRSRFSLSCLPAENYPEFA-ESQME 124
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
FT+S LK L+ F +A QD+RYYLNGLLL + V+SDGHRL+ Y+ ++
Sbjct: 125 NCFTISSGKLKKALDKTMFCMANQDVRYYLNGLLLHISNNALKLVASDGHRLSIYEDELE 184
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ II+PRK V L RLL++ + P+++ S+N I+I N +KL+D K+ D+
Sbjct: 185 TPTGLEARIIVPRKGVQELSRLLDDGDEPLQVSFSSNHIRIEVHNAVFSAKLVDSKYPDF 244
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
V + + + L +L R++I++N+K +GV + L+I
Sbjct: 245 GKVFQQSFLDPIAIPKPLLREALTRVAILANEKFRGVTFHFAADLLRI 292
>gi|384083022|ref|ZP_09994197.1| DNA polymerase III subunit beta [gamma proteobacterium HIMB30]
Length = 368
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 164/309 (53%), Gaps = 3/309 (0%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ V+ E+ +L Q S+VE+K + IL+N+L+ ++ TD + +I+T
Sbjct: 1 MEFSVSREQ--LLEKAQTAASVVERKQTMAILANVLIEVDATGAVVTGTDLDTEISTSME 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ S + V +K +DI ++LPE + + M + SG+S+F L TL A +YP
Sbjct: 59 LVEVASGGAVTVPGKKLVDIAKALPEGSVIQFKQDGAQMLLSSGRSRFKLATLPAADYPR 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ + L++ L+ + F++AQQD+RYYLNG+L S V++DGHRL
Sbjct: 119 LEIRGDLT-TVALAKGPLQDAIGKTQFAMAQQDVRYYLNGMLFSIGGGEFRTVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
+ YQ ++ S S +I+PRK V L RL + ++ VEL S ++ S L
Sbjct: 178 SLYQTALEGMSSEPSSLIVPRKAVLELARLASSADDTVELAFSTTHFRVSGPTFVFTSVL 237
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG+F DY+ V+ + +R +L L R SI+S+++ +GVRL + + + ++
Sbjct: 238 IDGRFPDYERVVPQGGDHVVRADRKRLREVLLRASILSSEQYRGVRLRLTQGQIDVMANN 297
Query: 301 SNREKASST 309
+ +E+A +
Sbjct: 298 AEQEEAQES 306
>gi|328541626|ref|YP_004301735.1| DNA polymerase III subunit beta [Polymorphum gilvum SL003B-26A1]
gi|326411378|gb|ADZ68441.1| DNA polymerase III, beta subunit [Polymorphum gilvum SL003B-26A1]
Length = 372
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 176/309 (56%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L L V +VE++N +PILSN+L+ + +TD ++++ T +
Sbjct: 6 ERTDLLKSLTHVHRVVERRNTIPILSNVLLRAEHGALKLKATDLDLEVLE-TVPAMIEAP 64
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A DI+R LPE +V + +N + I++G+S+F LQ L ++P +T +
Sbjct: 65 GGTTVPAHMIYDIVRKLPEGSQVVLETTGDNATLEIRAGRSRFALQMLPEADFPDLTAGT 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGHRLT 181
+ +FTLS ++ +++ F+I+ ++ RYYLNG+ L + Q + AV++DGHRL
Sbjct: 125 -FSHQFTLSAGAIRKLIDTTQFAISTEETRYYLNGIYLHTVDTPQGQKFRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
+V + II+PRKTV +Q+LLE++E V+++IS+ +I++ + + SKLI
Sbjct: 184 QAEVPAPAGAAGMPGIIVPRKTVGEIQKLLEDREAEVQVEISDTKIRVTTGPVVLTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY VI +K V+R++ ++ R+S IS+++ + V+L + L + V +
Sbjct: 244 DGTFPDYGRVIPQHNDKELRVDRDEFREAVDRVSTISSERGRAVKLALSEGRLVLAV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|182679952|ref|YP_001834098.1| DNA polymerase III subunit beta [Beijerinckia indica subsp. indica
ATCC 9039]
gi|182635835|gb|ACB96609.1| DNA polymerase III, beta subunit [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 371
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 178/311 (57%), Gaps = 9/311 (2%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ A+L L V +VE++N +PILSN+L+ + + + +TD ++++T G
Sbjct: 3 VTLERAALLKALGHVHRVVERRNTIPILSNVLLHSDGDGLLLKATDLDLEVTERLTAETG 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTI-YIENKHMFIKSGKSKFTLQTLDAKEYPIMTL 123
+ A DI+R LP+ ++++ E + ++SG+S+FTLQ+L ++P +
Sbjct: 63 TQG-GTTLPAHILYDIVRKLPDGSQISLETTEAGPLQLRSGRSRFTLQSLPESDFPDLAA 121
Query: 124 NSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIAVSSDGHR 179
+ ++ FTL LK +++ F+I+ ++ RYYLNG+ + + + AV++DGHR
Sbjct: 122 GT-FEQTFTLKAGDLKRLIDKTQFAISSEETRYYLNGIFMHTTEVEGHVMLRAVATDGHR 180
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L ++ + S IIIPRKTV +Q+L+E++ V+L++S +I+ F + + SK
Sbjct: 181 LARVEIPAPQGASGMPGIIIPRKTVAEVQKLVEDQAQEVKLEVSPTKIRFTFGEVVLTSK 240
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG F DY VI + +K V+R ++ R+S IS+++ + V+L + K+T+S
Sbjct: 241 LIDGTFPDYARVIPSGNDKFLTVDRGPFQDAVDRVSTISSERGRAVKLALAEG--KLTLS 298
Query: 300 SSNREKASSTD 310
+N + S+ +
Sbjct: 299 VTNPDSGSAVE 309
>gi|81251105|gb|ABB69900.1| DNA polymerase III beta chain [Nitrosomonas sp. OZK11]
Length = 373
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 169/303 (55%), Gaps = 7/303 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L + T ++ + PLQ V IVE+++ LPILSN L+ + K++ ++TD E++ ++
Sbjct: 1 MKLTI-TNRDLLFKPLQTVSGIVERRHTLPILSNTLIEIRNGKLTLVTTDLEIEAEAISS 59
Query: 61 VGY--GNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEY 118
+ ++ V+ +K DILR+LP + + + I SGKS+F+LQ L A+++
Sbjct: 60 IPELENQGTLQTTVSVKKLQDILRALPANTAIELTRSENRLQIVSGKSRFSLQLLPAEDF 119
Query: 119 PIMTL-NSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDG 177
P M N +TL Q+ K L V ++AQQD+RYYLNGLLL + + ++D
Sbjct: 120 PRMIRDNEPCSMSYTLPQRVFKKQLQRVSHAMAQQDLRYYLNGLLLLIEDNKMTLAATDT 179
Query: 178 HRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
HRL + + F S+ IIPRKTV L R LE+ + PVE++I ++ F + +I
Sbjct: 180 HRLGITSIALKGNFEK-SETIIPRKTVLELIRQLEDSDRPVEIEIYPKKVCFRFPDAVLI 238
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISII--SNDKLKGVRLVIKPNYLK 295
SK+I GKFLD++ I F VNR +LQR +II SND + V L I L
Sbjct: 239 SKVISGKFLDFRRAIPQTSVFRFDVNRLDFFHALQRTAIISSSNDLFRNVHLNITSGKLN 298
Query: 296 ITV 298
I+
Sbjct: 299 ISA 301
>gi|383768279|ref|YP_005447342.1| DNA polymerase III subunit beta [Bradyrhizobium sp. S23321]
gi|381356400|dbj|BAL73230.1| DNA polymerase III subunit beta [Bradyrhizobium sp. S23321]
Length = 372
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 174/312 (55%), Gaps = 10/312 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ +L L V +VE++N +PIL N+LV + K+S +TD ++++T T
Sbjct: 3 VTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAKLSLKATDLDLEVTE-TLPAET 61
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPIMT 122
++ + V A F DI+R LP+ ++ + + + I++G+S+FTLQTL ++P +
Sbjct: 62 ATAGSTTVPAHMFYDIVRKLPDGSQIVLEADGDRAVLAIRAGRSRFTLQTLPENDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIA----VSSDGH 178
F L+ K +K +++ F+I+ ++ RYYLNG+ L A V++DGH
Sbjct: 122 AGD-MSHSFNLAAKDVKRLIDRTQFAISTEETRYYLNGIYLHAAGTPAAATLRGVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL + K +I+PRKTV +QRL+E+ E V +++S +I+ N+ + S
Sbjct: 181 RLAQLDLVQPKGADGMPGVIVPRKTVGEVQRLIEDAEAEVTIELSQAKIRFTIGNVVLTS 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY VI +K +V++ ++ R+S IS+++ + V+L + P K+ +
Sbjct: 241 KLIDGTFPDYGRVIPQGNDKELVVDKKDFENAVDRVSTISSERGRAVKLSLSPG--KLVL 298
Query: 299 SSSNREKASSTD 310
S +N + S+T+
Sbjct: 299 SVTNPDSGSATE 310
>gi|27375940|ref|NP_767469.1| DNA polymerase III subunit beta [Bradyrhizobium japonicum USDA 110]
gi|27349078|dbj|BAC46094.1| DNA polymerase III beta chain [Bradyrhizobium japonicum USDA 110]
Length = 372
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 177/312 (56%), Gaps = 10/312 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ +L L V +VE++N +PIL N+LV + K+S +TD ++++T T
Sbjct: 3 VTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAKLSLKATDLDLEVTE-TLPAET 61
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPIMT 122
++ + V A F DI+R LP+ ++ + + + I++G+S+FTLQTL ++P +
Sbjct: 62 ATAGSTTVPAHMFYDIVRKLPDGSQIVLEADGDRAVLAIRAGRSRFTLQTLPENDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGH 178
F+L+ K +K +++ F+I+ ++ RYYLNG+ L + + + V++DGH
Sbjct: 122 AGD-MSHSFSLAAKDVKRLIDRTQFAISTEETRYYLNGIYLHAAGTAKAATLRGVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL + K +I+PRKTV +QRL+E+ E + +++S +I+ N+ + S
Sbjct: 181 RLAQLDLVQPKGADGMPGVIVPRKTVGEVQRLIEDTEAEMTIELSQAKIRFTIGNVVLTS 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY VI +K +V++ ++ R+S IS+++ + V+L + P K+ +
Sbjct: 241 KLIDGTFPDYGRVIPQGNDKELVVDKKDFENAVDRVSTISSERGRAVKLSLSPG--KLVL 298
Query: 299 SSSNREKASSTD 310
S +N + S+T+
Sbjct: 299 SVTNPDSGSATE 310
>gi|365890785|ref|ZP_09429276.1| DNA polymerase III, beta-subunit [Bradyrhizobium sp. STM 3809]
gi|365333322|emb|CCE01807.1| DNA polymerase III, beta-subunit [Bradyrhizobium sp. STM 3809]
Length = 372
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 177/312 (56%), Gaps = 10/312 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ +L L V +VE++N +PIL N+LV + ++S +TD ++++T A
Sbjct: 3 VTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENARLSLRATDLDLEVTETLAAETA 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPIMT 122
+ + V A F DI+R LP+ ++ + + + + I++G+SKFTLQTL ++P +
Sbjct: 63 TAG-STTVPAHMFYDIVRKLPDGSQIVLESDGERAVLAIRAGRSKFTLQTLPESDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGH 178
+ F + K +K +++ F+I+ ++ RYYLNG+ L + ++ + AV++DGH
Sbjct: 122 AG-EMTHAFGVPAKDIKSLIDRTQFAISTEETRYYLNGIYLHAGGTAKQPTLRAVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL + + +I+PRKTV +QRL+E+ ++ V +++S +I+ + + S
Sbjct: 181 RLAQVDLPQPAGAAEMPGVIVPRKTVGEVQRLIEDNDSEVRIELSQGKIRFTLGQVVLTS 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY VI +K +V++ ++ R+S IS+++ + V+L + K+ +
Sbjct: 241 KLIDGTFPDYGRVIPQNNDKELVVDKADFAAAVDRVSTISSERGRAVKLALSAG--KLVL 298
Query: 299 SSSNREKASSTD 310
S +N + S+T+
Sbjct: 299 SVTNPDSGSATE 310
>gi|338972728|ref|ZP_08628099.1| DNA polymerase III beta subunit [Bradyrhizobiaceae bacterium SG-6C]
gi|414169664|ref|ZP_11425397.1| DNA polymerase III, beta subunit [Afipia clevelandensis ATCC 49720]
gi|338233889|gb|EGP09008.1| DNA polymerase III beta subunit [Bradyrhizobiaceae bacterium SG-6C]
gi|410885396|gb|EKS33211.1| DNA polymerase III, beta subunit [Afipia clevelandensis ATCC 49720]
Length = 372
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 178/314 (56%), Gaps = 14/314 (4%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAV--G 62
V E+ +L L V +VE++N +PIL N+L+ + ++S +TD ++++T A
Sbjct: 3 VTVERAQLLKSLSHVHRVVERRNTIPILGNVLIRADKSRLSLKATDLDLEVTETLAAETA 62
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPI 120
G S+ V A F DI+R LP+ ++ + + + I++G+S+FTLQTL ++P
Sbjct: 63 TGGSTT---VPAHMFYDIVRKLPDGSQIVLEGDGDRSVLAIRAGRSRFTLQTLPESDFPD 119
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSD 176
+ FTL+ +K +++ F+I+ ++ RYYLNG+ L + + + AV++D
Sbjct: 120 LAAGD-MTHAFTLTAADMKRLIDRTQFAISTEETRYYLNGIYLHAAGAAKAATLRAVATD 178
Query: 177 GHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEI 236
GHRL + + K +I+PRKTV +QRL+E+ E +++++S +I+ ++ +
Sbjct: 179 GHRLAQVDLPLPKSAEGMPGVIVPRKTVGEVQRLIEDAEAELKIELSQGKIRFTLGDVVL 238
Query: 237 ISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
SKLIDG F DY VI +K +V++ ++ R+S IS+++ + V+L + K+
Sbjct: 239 TSKLIDGTFPDYGRVIPQNNDKELIVDKKDFEAAVDRVSTISSERGRAVKLALSAG--KL 296
Query: 297 TVSSSNREKASSTD 310
+S +N + S+T+
Sbjct: 297 VLSVTNPDSGSATE 310
>gi|398822639|ref|ZP_10581017.1| DNA polymerase III, beta subunit [Bradyrhizobium sp. YR681]
gi|398226670|gb|EJN12914.1| DNA polymerase III, beta subunit [Bradyrhizobium sp. YR681]
Length = 372
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 176/312 (56%), Gaps = 10/312 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ +L L V +VE++N +PIL N+LV + K+S +TD ++++T T
Sbjct: 3 VTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAKLSLKATDLDLEVTE-TLPAET 61
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPIMT 122
++ + V A F DI+R LP+ ++ + + + I++G+S+FTLQTL ++P +
Sbjct: 62 ATAGSTTVPAHMFYDIVRKLPDGSQIVLEADGDRAVLAIRAGRSRFTLQTLPENDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGH 178
F L+ K +K +++ F+I+ ++ RYYLNG+ L + + + V++DGH
Sbjct: 122 AGD-MSHSFNLAAKDVKRLIDRTQFAISTEETRYYLNGIYLHAAGTAKAATLRGVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL + K +I+PRKTV +QRL+E+ E + +++S +I+ N+ + S
Sbjct: 181 RLAQLDLVQPKGADGMPGVIVPRKTVGEVQRLIEDTEAEMTIELSQAKIRFTIGNVVLTS 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY VI +K +V++ ++ R+S IS+++ + V+L + P K+ +
Sbjct: 241 KLIDGTFPDYGRVIPQGNDKELVVDKKDFENAVDRVSTISSERGRAVKLSLSPG--KLVL 298
Query: 299 SSSNREKASSTD 310
S +N + S+T+
Sbjct: 299 SVTNPDSGSATE 310
>gi|298290590|ref|YP_003692529.1| DNA polymerase III subunit beta [Starkeya novella DSM 506]
gi|296927101|gb|ADH87910.1| DNA polymerase III, beta subunit [Starkeya novella DSM 506]
Length = 371
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 171/313 (54%), Gaps = 9/313 (2%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ +L L V +VE++N +PIL+N+L+ ++ ++ +TD +++I A G
Sbjct: 3 VTVERAELLKSLAHVHRVVERRNTIPILANVLMRTDARGLALRATDLDIEIVETIAAEVG 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPIMT 122
V A DI+R LPE +V I + +++G+S+F LQTL E+P +
Sbjct: 63 QEGATT-VPAHTIYDIVRKLPEGAQVQIETSGDRGTLTVRAGRSRFALQTLPETEFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN---IIAVSSDGHR 179
+ FTL LK +++ F+I+ ++ RYYLNG+ L + + AV++DGHR
Sbjct: 122 AG-EMTHRFTLPAGELKRLVDKTQFAISTEETRYYLNGIYLHVADASGPVLRAVATDGHR 180
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L Q + +I+PRK V +QRL E+ E V +++S +I++ + + SK
Sbjct: 181 LAQAQTTAPAGATGMPGVIVPRKAVAEIQRLAEDAEAEVTVELSTAKIRVSLDRVVLTSK 240
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG F DY VI +K+ +V++ ++ R+S +++++ + V+L I K+T+S
Sbjct: 241 LIDGTFPDYGRVIPLGNDKTLVVDKADFASAVDRVSTVASERGRAVKLSIGDG--KLTLS 298
Query: 300 SSNREKASSTDLI 312
+N + S+T+ I
Sbjct: 299 VTNPDSGSATEEI 311
>gi|365885288|ref|ZP_09424294.1| DNA polymerase III, beta-subunit [Bradyrhizobium sp. ORS 375]
gi|365286043|emb|CCD96825.1| DNA polymerase III, beta-subunit [Bradyrhizobium sp. ORS 375]
Length = 372
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 178/312 (57%), Gaps = 10/312 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ +L L V +VE++N +PIL N+LV + ++S +TD ++++T A
Sbjct: 3 VTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENARLSLRATDLDLEVTETLAAETA 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPIMT 122
+ + V A F DI+R LP+ ++ + + + + I++G+SKFTLQTL ++P +
Sbjct: 63 TAG-STTVPAHMFYDIVRKLPDGSQIVLESDGERAVLAIRAGRSKFTLQTLPESDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGH 178
+ F + K +K +++ F+I+ ++ RYYLNG+ L + ++ + AV++DGH
Sbjct: 122 AG-EMTHAFGVPAKDIKSLIDRTQFAISTEETRYYLNGIYLHAGGTAKQPTLRAVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL + + +I+PRKTV +QRL+E+ ++ +++++S +I+ + + S
Sbjct: 181 RLAQVDLPQPAGAAEMPGVIVPRKTVGEVQRLIEDNDSEIKIELSQGKIRFTLGQVVLTS 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY VI +K +V++ ++ R+S IS+++ + V+L + K+ +
Sbjct: 241 KLIDGTFPDYGRVIPQNNDKELVVDKADFAAAVDRVSTISSERGRAVKLALSAG--KLVL 298
Query: 299 SSSNREKASSTD 310
S +N + S+T+
Sbjct: 299 SVTNPDSGSATE 310
>gi|384214552|ref|YP_005605716.1| DNA polymerase III subunit beta [Bradyrhizobium japonicum USDA 6]
gi|354953449|dbj|BAL06128.1| DNA polymerase III beta chain [Bradyrhizobium japonicum USDA 6]
Length = 372
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 176/312 (56%), Gaps = 10/312 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ +L L V +VE++N +PIL N+LV + K+S +TD ++++T T
Sbjct: 3 VTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAKLSLKATDLDLEVTE-TLPAET 61
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPIMT 122
++ + V A F DI+R LP+ ++ + + + I++G+S+FTLQTL ++P +
Sbjct: 62 ATAGSTTVPAHMFYDIVRKLPDGSQIVLEADGDRAVLAIRAGRSRFTLQTLPENDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGH 178
F+L+ K +K +++ F+I+ ++ RYYLNG+ L + + V++DGH
Sbjct: 122 AGD-MSHSFSLAAKDVKRLIDRTQFAISTEETRYYLNGIYLHAAGTATAATLRGVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL + K +I+PRKTV +QRL+E+ E V +++S +I+ N+ + S
Sbjct: 181 RLAQLDLVQPKGADGMPGVIVPRKTVGEVQRLIEDNEAEVTIELSQAKIRFTIGNVVLTS 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY VI +K +V++ ++ R+S IS+++ + V+L + P K+ +
Sbjct: 241 KLIDGTFPDYGRVIPQGNDKELVVDKKDFENAVDRVSTISSERGRAVKLSLSPG--KLVL 298
Query: 299 SSSNREKASSTD 310
S +N + S+T+
Sbjct: 299 SVTNPDSGSATE 310
>gi|169632031|ref|YP_001705767.1| DNA polymerase III subunit beta [Acinetobacter baumannii SDF]
gi|384141250|ref|YP_005523960.1| DNA polymerase III subunit beta [Acinetobacter baumannii MDR-ZJ06]
gi|385235561|ref|YP_005796900.1| DNA polymerase sliding clamp subunit [Acinetobacter baumannii
TCDC-AB0715]
gi|387122091|ref|YP_006287973.1| DNA polymerase III subunit beta [Acinetobacter baumannii MDR-TJ]
gi|416150203|ref|ZP_11603250.1| DNA polymerase sliding clamp subunit [Acinetobacter baumannii
AB210]
gi|417545485|ref|ZP_12196571.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC032]
gi|417570743|ref|ZP_12221600.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC189]
gi|417868806|ref|ZP_12513810.1| DNA polymerase III subunit beta [Acinetobacter baumannii ABNIH1]
gi|417884219|ref|ZP_12528425.1| DNA polymerase III subunit beta [Acinetobacter baumannii ABNIH4]
gi|421203324|ref|ZP_15660465.1| DNA polymerase III subunit beta [Acinetobacter baumannii AC12]
gi|421535187|ref|ZP_15981450.1| DNA polymerase III subunit beta [Acinetobacter baumannii AC30]
gi|421661665|ref|ZP_16101836.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC110]
gi|421667744|ref|ZP_16107804.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC087]
gi|421669465|ref|ZP_16109487.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC099]
gi|421688777|ref|ZP_16128473.1| DNA polymerase III, beta subunit [Acinetobacter baumannii IS-143]
gi|421697106|ref|ZP_16136681.1| DNA polymerase III, beta subunit [Acinetobacter baumannii WC-692]
gi|421701602|ref|ZP_16141094.1| DNA polymerase III subunit beta [Acinetobacter baumannii ZWS1122]
gi|421705412|ref|ZP_16144843.1| DNA polymerase III subunit beta [Acinetobacter baumannii ZWS1219]
gi|421790832|ref|ZP_16227024.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Naval-2]
gi|424050455|ref|ZP_17787991.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Ab11111]
gi|424065015|ref|ZP_17802499.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Ab44444]
gi|425752970|ref|ZP_18870864.1| DNA polymerase III, beta subunit [Acinetobacter baumannii
Naval-113]
gi|445476982|ref|ZP_21454020.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Naval-78]
gi|169150823|emb|CAO99423.1| DNA polymerase III, beta chain [Acinetobacter baumannii]
gi|323516069|gb|ADX90450.1| DNA polymerase sliding clamp subunit [Acinetobacter baumannii
TCDC-AB0715]
gi|333364052|gb|EGK46066.1| DNA polymerase sliding clamp subunit [Acinetobacter baumannii
AB210]
gi|342232129|gb|EGT96914.1| DNA polymerase III subunit beta [Acinetobacter baumannii ABNIH1]
gi|342234625|gb|EGT99267.1| DNA polymerase III subunit beta [Acinetobacter baumannii ABNIH4]
gi|347591743|gb|AEP04464.1| DNA polymerase III, beta chain [Acinetobacter baumannii MDR-ZJ06]
gi|385876583|gb|AFI93678.1| DNA polymerase III, beta subunit [Acinetobacter baumannii MDR-TJ]
gi|395551191|gb|EJG17200.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC189]
gi|398327162|gb|EJN43299.1| DNA polymerase III subunit beta [Acinetobacter baumannii AC12]
gi|400383373|gb|EJP42051.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC032]
gi|404559614|gb|EKA64867.1| DNA polymerase III, beta subunit [Acinetobacter baumannii WC-692]
gi|404560072|gb|EKA65321.1| DNA polymerase III, beta subunit [Acinetobacter baumannii IS-143]
gi|404672143|gb|EKB39981.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Ab11111]
gi|404673098|gb|EKB40902.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Ab44444]
gi|407195820|gb|EKE66942.1| DNA polymerase III subunit beta [Acinetobacter baumannii ZWS1219]
gi|407196027|gb|EKE67144.1| DNA polymerase III subunit beta [Acinetobacter baumannii ZWS1122]
gi|408715538|gb|EKL60665.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC110]
gi|409986913|gb|EKO43103.1| DNA polymerase III subunit beta [Acinetobacter baumannii AC30]
gi|410382907|gb|EKP35442.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC087]
gi|410388609|gb|EKP41042.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC099]
gi|410404653|gb|EKP56716.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Naval-2]
gi|425498443|gb|EKU64522.1| DNA polymerase III, beta subunit [Acinetobacter baumannii
Naval-113]
gi|444777154|gb|ELX01189.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Naval-78]
Length = 382
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 100/312 (32%), Positives = 174/312 (55%), Gaps = 14/312 (4%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN--S 66
K ++L+ L V+ VE+++ L ILSN+ + N++ ++ +D EV++ TA+ G
Sbjct: 7 KESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTALSEGACLE 66
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
+ V ARK ++I +SLP + + I E++ +KSG S+F L TL A++YP++T +
Sbjct: 67 AGETTVPARKLMEICKSLPTAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYPLLTTEN 126
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
+ ++Q+ LK + F++A QD+R+YL G LL + + AV++DGHRL ++
Sbjct: 127 SQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLRAVTTDGHRLALCEI 186
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFS-----------NI 234
S I+PRK V LQRLL ++ + L I + + + +
Sbjct: 187 LASSTSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPSRDKEQGDITV 246
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+KLIDGKF DY+ VI +K L+ + +SLQR++I+SN+KL+GV L + L
Sbjct: 247 RFTTKLIDGKFPDYRRVIPRGGDKHVLIGHDVFKQSLQRVAILSNEKLRGVFLNFNQDSL 306
Query: 295 KITVSSSNREKA 306
++ ++ +++A
Sbjct: 307 QLRANNPEQDEA 318
>gi|169794208|ref|YP_001712001.1| DNA polymerase III subunit beta [Acinetobacter baumannii AYE]
gi|184156324|ref|YP_001844663.1| DNA polymerase sliding clamp subunit [Acinetobacter baumannii
ACICU]
gi|213155389|ref|YP_002317434.1| DNA polymerase III subunit beta [Acinetobacter baumannii AB0057]
gi|215481763|ref|YP_002323945.1| DNA polymerase III, beta subunit [Acinetobacter baumannii
AB307-0294]
gi|239503908|ref|ZP_04663218.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB900]
gi|260558094|ref|ZP_05830305.1| DNA polymerase III, beta subunit [Acinetobacter baumannii ATCC
19606 = CIP 70.34]
gi|301345944|ref|ZP_07226685.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB056]
gi|301512868|ref|ZP_07238105.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB058]
gi|301594681|ref|ZP_07239689.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB059]
gi|332854714|ref|ZP_08435501.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6013150]
gi|332865594|ref|ZP_08436434.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6013113]
gi|332873308|ref|ZP_08441263.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6014059]
gi|384129973|ref|YP_005512585.1| DNA polymerase III subunit beta [Acinetobacter baumannii 1656-2]
gi|403674232|ref|ZP_10936496.1| DNA polymerase III subunit beta [Acinetobacter sp. NCTC 10304]
gi|417548641|ref|ZP_12199722.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Naval-18]
gi|417555651|ref|ZP_12206720.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Naval-81]
gi|417562792|ref|ZP_12213671.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC137]
gi|417565768|ref|ZP_12216642.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC143]
gi|417574904|ref|ZP_12225757.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Canada
BC-5]
gi|417576968|ref|ZP_12227813.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Naval-17]
gi|417874856|ref|ZP_12519695.1| DNA polymerase III subunit beta [Acinetobacter baumannii ABNIH2]
gi|417876286|ref|ZP_12521065.1| DNA polymerase III subunit beta [Acinetobacter baumannii ABNIH3]
gi|421199371|ref|ZP_15656532.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC109]
gi|421453727|ref|ZP_15903079.1| DNA polymerase III, beta subunit [Acinetobacter baumannii IS-123]
gi|421621429|ref|ZP_16062351.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC074]
gi|421625819|ref|ZP_16066664.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC098]
gi|421628558|ref|ZP_16069326.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC180]
gi|421634906|ref|ZP_16075512.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Naval-13]
gi|421645168|ref|ZP_16085638.1| DNA polymerase III, beta subunit [Acinetobacter baumannii IS-235]
gi|421647859|ref|ZP_16088270.1| DNA polymerase III, beta subunit [Acinetobacter baumannii IS-251]
gi|421653096|ref|ZP_16093442.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC0162]
gi|421655658|ref|ZP_16095975.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Naval-72]
gi|421657581|ref|ZP_16097835.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Naval-83]
gi|421672846|ref|ZP_16112798.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC065]
gi|421678126|ref|ZP_16118014.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC111]
gi|421690908|ref|ZP_16130573.1| DNA polymerase III, beta subunit [Acinetobacter baumannii IS-116]
gi|421699052|ref|ZP_16138590.1| DNA polymerase III, beta subunit [Acinetobacter baumannii IS-58]
gi|421788058|ref|ZP_16224375.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Naval-82]
gi|421795961|ref|ZP_16232032.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Naval-21]
gi|421800896|ref|ZP_16236864.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Canada
BC1]
gi|421803104|ref|ZP_16239042.1| DNA polymerase III, beta subunit [Acinetobacter baumannii WC-A-694]
gi|421809551|ref|ZP_16245385.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC035]
gi|424058153|ref|ZP_17795652.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Ab33333]
gi|425748593|ref|ZP_18866578.1| DNA polymerase III, beta subunit [Acinetobacter baumannii WC-348]
gi|445407134|ref|ZP_21432228.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Naval-57]
gi|445445133|ref|ZP_21443078.1| DNA polymerase III, beta subunit [Acinetobacter baumannii WC-A-92]
gi|445457081|ref|ZP_21446299.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC047]
gi|445469216|ref|ZP_21451066.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC338]
gi|445486754|ref|ZP_21457507.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AA-014]
gi|169147135|emb|CAM84994.1| DNA polymerase III, beta chain [Acinetobacter baumannii AYE]
gi|183207918|gb|ACC55316.1| DNA polymerase sliding clamp subunit [Acinetobacter baumannii
ACICU]
gi|193075922|gb|ABO10499.2| DNA polymerase III [Acinetobacter baumannii ATCC 17978]
gi|213054549|gb|ACJ39451.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB0057]
gi|213987621|gb|ACJ57920.1| DNA polymerase III, beta subunit [Acinetobacter baumannii
AB307-0294]
gi|260408448|gb|EEX01755.1| DNA polymerase III, beta subunit [Acinetobacter baumannii ATCC
19606 = CIP 70.34]
gi|322506193|gb|ADX01647.1| DNA polymerase III, beta chain [Acinetobacter baumannii 1656-2]
gi|332727871|gb|EGJ59273.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6013150]
gi|332735246|gb|EGJ66323.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6013113]
gi|332738514|gb|EGJ69386.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6014059]
gi|342227635|gb|EGT92552.1| DNA polymerase III subunit beta [Acinetobacter baumannii ABNIH2]
gi|342238096|gb|EGU02535.1| DNA polymerase III subunit beta [Acinetobacter baumannii ABNIH3]
gi|395525374|gb|EJG13463.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC137]
gi|395557524|gb|EJG23525.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC143]
gi|395564368|gb|EJG26019.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC109]
gi|395570189|gb|EJG30851.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Naval-17]
gi|400205637|gb|EJO36617.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Canada
BC-5]
gi|400213595|gb|EJO44549.1| DNA polymerase III, beta subunit [Acinetobacter baumannii IS-123]
gi|400388940|gb|EJP52012.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Naval-18]
gi|400392068|gb|EJP59115.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Naval-81]
gi|404563561|gb|EKA68767.1| DNA polymerase III, beta subunit [Acinetobacter baumannii IS-116]
gi|404571974|gb|EKA77020.1| DNA polymerase III, beta subunit [Acinetobacter baumannii IS-58]
gi|404670737|gb|EKB38621.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Ab33333]
gi|408503454|gb|EKK05220.1| DNA polymerase III, beta subunit [Acinetobacter baumannii IS-235]
gi|408503650|gb|EKK05406.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC0162]
gi|408507301|gb|EKK08997.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Naval-72]
gi|408516053|gb|EKK17632.1| DNA polymerase III, beta subunit [Acinetobacter baumannii IS-251]
gi|408697574|gb|EKL43083.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC098]
gi|408698349|gb|EKL43842.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC074]
gi|408703247|gb|EKL48647.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Naval-13]
gi|408705930|gb|EKL51257.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC180]
gi|408711772|gb|EKL56965.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Naval-83]
gi|410388460|gb|EKP40898.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC065]
gi|410392611|gb|EKP44969.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC111]
gi|410400403|gb|EKP52576.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Naval-21]
gi|410404577|gb|EKP56641.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Naval-82]
gi|410406472|gb|EKP58480.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Canada
BC1]
gi|410413544|gb|EKP65360.1| DNA polymerase III, beta subunit [Acinetobacter baumannii WC-A-694]
gi|410414294|gb|EKP66099.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC035]
gi|425490833|gb|EKU57125.1| DNA polymerase III, beta subunit [Acinetobacter baumannii WC-348]
gi|444761396|gb|ELW85803.1| DNA polymerase III, beta subunit [Acinetobacter baumannii WC-A-92]
gi|444769376|gb|ELW93566.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AA-014]
gi|444774521|gb|ELW98602.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC338]
gi|444777202|gb|ELX01236.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC047]
gi|444781101|gb|ELX05023.1| DNA polymerase III, beta subunit [Acinetobacter baumannii Naval-57]
gi|452945135|gb|EME50662.1| DNA polymerase III subunit beta [Acinetobacter baumannii MSP4-16]
Length = 382
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 100/312 (32%), Positives = 174/312 (55%), Gaps = 14/312 (4%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN--S 66
K ++L+ L V+ VE+++ L ILSN+ + N++ ++ +D EV++ TA+ G
Sbjct: 7 KESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTALSEGACLE 66
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
+ V ARK ++I +SLP + + I E++ +KSG S+F L TL A++YP++T +
Sbjct: 67 AGETTVPARKLMEICKSLPTAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYPLLTTEN 126
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
+ ++Q+ LK + F++A QD+R+YL G LL + + AV++DGHRL ++
Sbjct: 127 SQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLRAVTTDGHRLALCEI 186
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFS-----------NI 234
S I+PRK V LQRLL ++ + L I + + + +
Sbjct: 187 LASSTSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPSRDKEQGDITV 246
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+KLIDGKF DY+ VI +K L+ + +SLQR++I+SN+KL+GV L + L
Sbjct: 247 RFTTKLIDGKFPDYRRVIPRGGDKHVLIGHDVFKQSLQRVAILSNEKLRGVFLNFNQDSL 306
Query: 295 KITVSSSNREKA 306
++ ++ +++A
Sbjct: 307 QLRANNPEQDEA 318
>gi|146337177|ref|YP_001202225.1| DNA polymerase III subunit beta [Bradyrhizobium sp. ORS 278]
gi|146189983|emb|CAL73975.1| DNA polymerase III, beta-subunit [Bradyrhizobium sp. ORS 278]
Length = 372
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 178/312 (57%), Gaps = 10/312 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ +L L V +VE++N +PIL N+LV + ++S +TD ++++T A
Sbjct: 3 VTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENARLSLRATDLDLEVTETLAAETA 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPIMT 122
+ + V A F DI+R LP+ ++ + + + + I++G+SKFTLQTL ++P +
Sbjct: 63 TAG-STTVPAHMFYDIVRKLPDGSQIVLESDGERAVLAIRAGRSKFTLQTLPESDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGH 178
+ F + K +K +++ F+I+ ++ RYYLNG+ L + ++ + AV++DGH
Sbjct: 122 AG-EMTHAFGVPAKDIKSLIDRTQFAISTEETRYYLNGIYLHAGGTAKQPTLRAVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL + + +I+PRKTV +QRL+E+ ++ +++++S +I+ + + S
Sbjct: 181 RLAQVDLPQPSGAAEMPGVIVPRKTVGEVQRLIEDNDSEIKIELSQGKIRFTLGQVVLTS 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY VI +K +V++ ++ R+S IS+++ + V+L + K+ +
Sbjct: 241 KLIDGTFPDYGRVIPQNNDKELVVDKADFAAAVDRVSTISSERGRAVKLALSAG--KLVL 298
Query: 299 SSSNREKASSTD 310
S +N + S+T+
Sbjct: 299 SVTNPDSGSATE 310
>gi|329891033|ref|ZP_08269376.1| DNA polymerase III, beta subunit [Brevundimonas diminuta ATCC
11568]
gi|328846334|gb|EGF95898.1| DNA polymerase III, beta subunit [Brevundimonas diminuta ATCC
11568]
Length = 372
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 174/304 (57%), Gaps = 10/304 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQL + E++A+L L V S+VE++N +PILSN+L+ +++SF +TD ++++ A
Sbjct: 1 MQLTI--ERSALLRALGHVQSVVERRNTIPILSNVLLSAGRDRLSFAATDLDMEMVD-EA 57
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEY 118
N I A +I+R LP+ +V++ ++ + + +G+S+F L L A ++
Sbjct: 58 EAQVNVEGQITAPAHTLYEIVRKLPDGAEVSLTYSGDDPRLVVAAGRSRFNLPVLPAGDF 117
Query: 119 PIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNII----AVS 174
P+M+ + +TL ++ L +++ F+++ ++ RYYLNGL L I AV+
Sbjct: 118 PVMSTEAS-GARYTLPKEDLARLIDKTRFAVSTEETRYYLNGLYLHTVADGGIPLLRAVA 176
Query: 175 SDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNI 234
+DGHRL + + + +I+PRKTV ++RLL++ PVE+++S +I+ F
Sbjct: 177 TDGHRLALAETPAPEGAAGGPGVIVPRKTVDQVRRLLDDGAGPVEVQVSAQKIRFEFGEA 236
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+ SK+IDG F DY VI +K ++ + +++ R++ IS +K + V+L + +
Sbjct: 237 SLTSKVIDGAFPDYLRVIPKGNDKQADIDNSLFAKAVDRVATISAEKSRSVKLAFDNDRV 296
Query: 295 KITV 298
K+TV
Sbjct: 297 KLTV 300
>gi|154250460|ref|YP_001411284.1| DNA polymerase III subunit beta [Parvibaculum lavamentivorans DS-1]
gi|154154410|gb|ABS61627.1| DNA polymerase III, beta subunit [Parvibaculum lavamentivorans
DS-1]
Length = 372
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 172/312 (55%), Gaps = 10/312 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
+ E+ A+L L V S+VE++N +PILSN+L+ ++S +TD ++++
Sbjct: 3 ITIERGALLKSLNHVQSVVERRNTIPILSNVLIKAEDGQLSLTATDLDIEVVEAIDADVA 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTI--YIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+A DI+R LPE +V + + + + +G+S+F LQ+L +++P+M
Sbjct: 63 QPGATT-ASAHTLYDIVRKLPEGAQVELSTGADEGRLQLTAGRSRFALQSLPQEDFPVMA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGH 178
S F L + ++ +++ F+I+ ++ RYYLNG+ ++K++ AV++DGH
Sbjct: 122 AGS-LPHRFELPAEAMRRLIDKTRFAISMEETRYYLNGIYFHAVDGPKQKSLRAVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL ++ + + +I+PRKTV LQ+LLE + + +S +I+ F I + S
Sbjct: 181 RLAQVDHDLPEGAAGMPGVIVPRKTVLELQKLLEGNSGALSVGVSETKIRFEFGGIVLTS 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY VI +K V+ + ++ R+S IS +K + V+L I+ K+T+
Sbjct: 241 KLIDGTFPDYGRVIPVGNDKMLQVDGKRFAEAVDRVSTISTEKSRAVKLNIEEG--KLTL 298
Query: 299 SSSNREKASSTD 310
S +N + S+T+
Sbjct: 299 SVTNPDSGSATE 310
>gi|339477734|ref|YP_004706554.1| DNA polymerase III subunit beta [Candidatus Moranella endobia PCIT]
gi|338172285|gb|AEI74686.1| DNA polymerase III, beta subunit [Candidatus Moranella endobia
PCIT]
Length = 367
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 173/306 (56%), Gaps = 5/306 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ +V E+ ++ +Q V ++ + LPILS++L+ + TD ++I
Sbjct: 1 MQFIV--EREHLIKSIQQVSGMLVVRPTLPILSHVLLQVTENSLLITGTDLSIEIIARVV 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ N I V ARKF DI R +PE ++ IEN+ M I+SG+ +++L TL A +P
Sbjct: 59 ISNTNDFGKITVPARKFFDICRCMPEKAEIAFNIENERMIIRSGRIRYSLVTLPASNFPN 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ Y+ EFTLSQ K + FS+A QDIR+YLNG+L + + + V++DGHRL
Sbjct: 119 LDYCQSYE-EFTLSQSIFKRAIESTQFSMANQDIRHYLNGMLFETEGRELRIVATDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
Y + +++ S II+PRK V L R+L + +++KI +N ++ I SN SKL
Sbjct: 178 AKYTILLNETLPYQS-IIVPRKGVIELVRMLNERIQLLKIKIGDNNLRAIISNYIFTSKL 236
Query: 241 IDGKFLDYKYVI-SNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
++G+F DY V+ N +K V + L ++ R SI+S++K + V+L + N LKIT
Sbjct: 237 VNGRFPDYNRVLHHNNSDKILEVECDLLRQAFTRASILSHEKFRSVQLNLSHNQLKITAH 296
Query: 300 SSNREK 305
+ +E+
Sbjct: 297 NMEQEE 302
>gi|424057512|ref|ZP_17795029.1| DNA polymerase III, beta subunit [Acinetobacter nosocomialis
Ab22222]
gi|425739456|ref|ZP_18857656.1| DNA polymerase III, beta subunit [Acinetobacter baumannii WC-487]
gi|407440028|gb|EKF46546.1| DNA polymerase III, beta subunit [Acinetobacter nosocomialis
Ab22222]
gi|425496452|gb|EKU62581.1| DNA polymerase III, beta subunit [Acinetobacter baumannii WC-487]
Length = 382
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 100/312 (32%), Positives = 172/312 (55%), Gaps = 14/312 (4%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN--S 66
K ++L+ L V+ VE+++ L ILSN+ + N + ++ +D EV++ TA+ G
Sbjct: 7 KESLLNVLSHVVGAVERRHTLNILSNVKIQTNGQALTITGSDLEVELVASTALSEGACLE 66
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
+ V ARK +DI +SLP + + I E++ +KSG S+F L TL A++YP++ +
Sbjct: 67 AGETTVPARKLMDICKSLPTAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYPLLNTEN 126
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
+ ++Q+ LK + F++A QD+R+YL G LL + + AV++DGHRL ++
Sbjct: 127 SQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLRAVTTDGHRLALCEI 186
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFS-----------NI 234
S I+PRK V LQRLL ++ + L I + + + +
Sbjct: 187 LASSSSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPSRDKEQSDITV 246
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+KLIDGKF DY+ VI +K L+ + +SLQR++I+SN+KL+GV L + L
Sbjct: 247 RFTTKLIDGKFPDYRRVIPRGGDKHVLIGHDVFKQSLQRVAILSNEKLRGVFLNFNQDSL 306
Query: 295 KITVSSSNREKA 306
++ ++ +++A
Sbjct: 307 QLRANNPEQDEA 318
>gi|260553771|ref|ZP_05826041.1| DNA polymerase subunit III [Acinetobacter sp. RUH2624]
gi|445435471|ref|ZP_21440320.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC021]
gi|260405075|gb|EEW98575.1| DNA polymerase subunit III [Acinetobacter sp. RUH2624]
gi|444755597|gb|ELW80176.1| DNA polymerase III, beta subunit [Acinetobacter baumannii OIFC021]
Length = 382
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 100/312 (32%), Positives = 172/312 (55%), Gaps = 14/312 (4%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN--S 66
K ++L+ L V+ VE+++ L ILSN+ + N + ++ +D EV++ TA+ G
Sbjct: 7 KESLLNVLSHVVGAVERRHTLNILSNVKIQTNGQALTITGSDLEVELVASTALSEGACLE 66
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
+ V ARK +DI +SLP + + I E++ +KSG S+F L TL A++YP++ +
Sbjct: 67 AGETTVPARKLMDICKSLPTAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYPLLNTEN 126
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
+ ++Q+ LK + F++A QD+R+YL G LL + + AV++DGHRL ++
Sbjct: 127 SQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLRAVTTDGHRLALCEI 186
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFS-----------NI 234
S I+PRK V LQRLL ++ + L I + + + +
Sbjct: 187 LASSSSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPSRDKEQGDITV 246
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+KLIDGKF DY+ VI +K L+ + +SLQR++I+SN+KL+GV L + L
Sbjct: 247 RFTTKLIDGKFPDYRRVIPRGGDKHVLIGHDVFKQSLQRVAILSNEKLRGVFLNFNQDSL 306
Query: 295 KITVSSSNREKA 306
++ ++ +++A
Sbjct: 307 QLRANNPEQDEA 318
>gi|261854632|ref|YP_003261915.1| DNA polymerase III subunit beta [Halothiobacillus neapolitanus c2]
gi|261835101|gb|ACX94868.1| DNA polymerase III, beta subunit [Halothiobacillus neapolitanus c2]
Length = 370
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 101/312 (32%), Positives = 179/312 (57%), Gaps = 12/312 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ V+ ++ + + VI VEK+ + ILSN+L+ +++ ++TD E+Q+ T
Sbjct: 1 MQFAVDRDRFS--SAINQVIGGVEKRQTMQILSNLLLEVADGRLTLVATDLEIQLRTSVD 58
Query: 61 V---GYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKE 117
V G +++N ARK DI++S + K+ + + + I G F L +++A
Sbjct: 59 VQMQAPGATTVN----ARKLADIVKSASQDAKIALTQTDGWLEIDIGTGVFRLASIEAGS 114
Query: 118 YPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDG 177
+P MT+++ +++QK L +++ FS+AQQD+RY+LNGLLL + + AV++DG
Sbjct: 115 FPQMTIDAATQSTVSITQKNLYALIDKTQFSMAQQDVRYFLNGLLLEVKPGQMTAVATDG 174
Query: 178 HRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLE-NKENPVELKISNNQIKIIFSNIEI 236
HRL Y ++ ++ + +I+PRK V + + L+ + ++ V L +NQI+++ +
Sbjct: 175 HRLAYAHLSDERLTENNRQVIVPRKMVSEMLKALDRDSDDEVSLAFRDNQIELLIGENYL 234
Query: 237 ISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
ISKLIDGK+ DY V+ K +V++ +L + LQR SI+SN++ G + P ++
Sbjct: 235 ISKLIDGKYPDYSRVMPQSNSKILIVSKTELKQVLQRASILSNERFSGAYFYLSPG--RL 292
Query: 297 TVSSSNREKASS 308
+ SSN E SS
Sbjct: 293 MIESSNAEHESS 304
>gi|429770497|ref|ZP_19302558.1| DNA polymerase III, beta subunit [Brevundimonas diminuta 470-4]
gi|429184429|gb|EKY25446.1| DNA polymerase III, beta subunit [Brevundimonas diminuta 470-4]
Length = 372
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 173/304 (56%), Gaps = 10/304 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQL + E++A+L L V S+VE++N +PILSN+L+ +++SF +TD ++++ A
Sbjct: 1 MQLTI--ERSALLRALGHVQSVVERRNTIPILSNVLLSAGRDRLSFAATDLDMEMVD-EA 57
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEY 118
N I A +I+R LP+ +V++ ++ + + +G+S+F L L A ++
Sbjct: 58 EAQVNVEGQITAPAHTLYEIVRKLPDGAEVSLTYSGDDPRLVVAAGRSRFNLPVLPAGDF 117
Query: 119 PIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNII----AVS 174
P+M+ + +TL ++ L +++ F+++ ++ RYYLNGL L I AV+
Sbjct: 118 PVMSTEAS-GARYTLPKEDLARLIDKTRFAVSTEETRYYLNGLYLHTVADGGIPLLRAVA 176
Query: 175 SDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNI 234
+DGHRL + + + +I+PRKTV ++RLL++ PVE+++S +I+ F
Sbjct: 177 TDGHRLALAETPAPEGAAGGPGVIVPRKTVDQVRRLLDDGAGPVEVQVSAQKIRFEFGEA 236
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+ SK+IDG F DY VI +K ++ +++ R++ IS +K + V+L + +
Sbjct: 237 SLTSKVIDGAFPDYLRVIPKGNDKQADIDNALFAKAVDRVATISAEKSRSVKLAFDNDRV 296
Query: 295 KITV 298
K+TV
Sbjct: 297 KLTV 300
>gi|365898023|ref|ZP_09435999.1| DNA polymerase III, beta-subunit [Bradyrhizobium sp. STM 3843]
gi|365421158|emb|CCE08541.1| DNA polymerase III, beta-subunit [Bradyrhizobium sp. STM 3843]
Length = 372
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 176/312 (56%), Gaps = 10/312 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ +L L V +VE++N +PIL N+LV + ++S +TD ++++T A
Sbjct: 3 VTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAQLSLKATDLDLEVTETLAAETA 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPIMT 122
+ + V A F DI+R LP+ ++ + + + + I++G+S+FTLQTL ++P +
Sbjct: 63 TAG-STTVPAHMFYDIVRKLPDGSQIVLESDGERAVLAIRAGRSRFTLQTLPESDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGH 178
+ F L+ K +K +++ F+I+ ++ RYYLNG+ L S ++ + V++DGH
Sbjct: 122 AG-EMTHSFALTAKDIKGLIDRTQFAISTEETRYYLNGIYLHAAGSAKQPVLRGVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL + + +I+PRKTV +QRL+E+ E + +++S +I+ + + S
Sbjct: 181 RLAQVDLPQPSGAADMPGVIVPRKTVGEVQRLIEDNEAEIRIELSQGKIRFTIGQVVLTS 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY VI +K +V++ ++ R+S IS+++ + V+L + K+ +
Sbjct: 241 KLIDGTFPDYGRVIPQNNDKELIVDKADFAAAVDRVSTISSERGRAVKLALSAG--KLVL 298
Query: 299 SSSNREKASSTD 310
S +N + S+T+
Sbjct: 299 SVTNPDSGSATE 310
>gi|359409369|ref|ZP_09201837.1| DNA polymerase III, beta subunit [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356676122|gb|EHI48475.1| DNA polymerase III, beta subunit [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 367
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 96/306 (31%), Positives = 176/306 (57%), Gaps = 9/306 (2%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ ++L PL V S+VE++N +PIL+NI++ + +++ +TD E+ I +
Sbjct: 6 DRLSLLRPLGHVSSVVERRNTIPILANIVIRAEAGQLTLTATDMEMDIAEQVSCSVAQDG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V A DI++ LP+ +VTI + + +++G+S FTL TL +++P S
Sbjct: 66 A-CTVPAHLLNDIVKKLPDGAEVTITVADGTASVQAGRSNFTLPTLPVEDFPAFNA-SDL 123
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN---IIAVSSDGHRLTYYQ 184
EF+++ ++ ++ F+I+ ++ RYYLNG+ F K + + AV++DGHRL Q
Sbjct: 124 PIEFSITTADMRHQIDTTRFAISTEETRYYLNGIY--FHKSDSGALAAVATDGHRLALAQ 181
Query: 185 VNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGK 244
+++ + +II+PRK V L++LL+++E V +++S + + F + + SKLIDG
Sbjct: 182 MSMPQGAQDLPNIILPRKAVGELRKLLDDEEGEVNVRLSETRAEFSFGQVRLTSKLIDGS 241
Query: 245 FLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNRE 304
F DY VI +K V+R ++ R+S IS++K + V+L + N L T+S+S E
Sbjct: 242 FPDYTRVIPRGNDKVLSVDRGLFSAAVDRVSTISSEKSRSVKLSLSENLL--TLSASTPE 299
Query: 305 KASSTD 310
+S+ +
Sbjct: 300 ASSAVE 305
>gi|39933082|ref|NP_945358.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris CGA009]
gi|39652707|emb|CAE25446.1| DNA polymerase III beta subunit [Rhodopseudomonas palustris CGA009]
Length = 372
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 176/312 (56%), Gaps = 10/312 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ +L L V +VE++N +PIL N+LV + +++ +TD ++++T T
Sbjct: 3 VTVERAQLLKSLSHVHRVVERRNTIPILGNVLVRAENAQLALKATDLDLEVTE-TLPAET 61
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPIMT 122
++ + V A F DI+R LP+ ++ + + + I++G+S+FTLQTL ++P +
Sbjct: 62 ATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSVLAIRAGRSRFTLQTLPESDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGH 178
+ F L +K +++ F+I+ ++ RYYLNG+ L S + ++ AV++DGH
Sbjct: 122 AG-EMSHAFRLPASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSPKASSLRAVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL + + +I+PRKTV +QRL+E+ E + +++S +I+ N+ + S
Sbjct: 181 RLAQLDLTLPSGADGMPGVIVPRKTVGEVQRLIEDTEAEIGIELSTGKIRFTLGNVVLTS 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY VI +K LV++ ++ R+S IS+++ + V+L + K+ +
Sbjct: 241 KLIDGTFPDYGRVIPQNNDKELLVDKKDFEAAVDRVSTISSERGRAVKLALSAG--KLVL 298
Query: 299 SSSNREKASSTD 310
S +N + S+T+
Sbjct: 299 SVTNPDSGSATE 310
>gi|293611383|ref|ZP_06693679.1| DNA polymerase III [Acinetobacter sp. SH024]
gi|427423398|ref|ZP_18913552.1| DNA polymerase III, beta subunit [Acinetobacter baumannii WC-136]
gi|292826255|gb|EFF84624.1| DNA polymerase III [Acinetobacter sp. SH024]
gi|425699826|gb|EKU69429.1| DNA polymerase III, beta subunit [Acinetobacter baumannii WC-136]
Length = 382
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 174/312 (55%), Gaps = 14/312 (4%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN--S 66
K ++L+ L V+ VE+++ L ILSN+ + N++ ++ +D EV++ T + G
Sbjct: 7 KESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTVLTEGACIE 66
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
+ V ARK ++I +SLP + + I E++ +KSG S+F L TL A++YP++T +
Sbjct: 67 AGETTVPARKLMEICKSLPTAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYPLLTTEN 126
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
+ ++Q+ LK + F++A QD+R+YL G LL + + AV++DGHRL ++
Sbjct: 127 SQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLRAVTTDGHRLALCEI 186
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFS-----------NI 234
S I+PRK V LQRLL ++ + L I + + + +
Sbjct: 187 TASSTSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPSRDKEQGDITV 246
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+KLIDGKF DY+ VI +K L++ + +SLQR++I+SN+KL+GV L + L
Sbjct: 247 RFTTKLIDGKFPDYRRVIPRGGDKHVLISHDVFKQSLQRVAILSNEKLRGVFLNFNQDSL 306
Query: 295 KITVSSSNREKA 306
++ ++ +++A
Sbjct: 307 QLRANNPEQDEA 318
>gi|92115635|ref|YP_575364.1| DNA polymerase III subunit beta [Nitrobacter hamburgensis X14]
gi|91798529|gb|ABE60904.1| DNA polymerase III, beta subunit [Nitrobacter hamburgensis X14]
Length = 372
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 175/316 (55%), Gaps = 18/316 (5%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQIT----TYTA 60
V E+ +L L V +VE++N +PIL N+LV + ++S +TD ++++T TA
Sbjct: 3 VTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENARLSLKATDLDLEVTETLAAETA 62
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEY 118
G + V A F DI+R LP+ ++ + + + I++G+S+FTLQTL ++
Sbjct: 63 TGGATT-----VPAHIFYDIVRKLPDGAQIVLEGDGDRSVLAIRAGRSRFTLQTLPENDF 117
Query: 119 PIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVS 174
P + + F L+ +K +++ F+I+ ++ RYYLNG+ L S + + V+
Sbjct: 118 PDLAAG-EMTHSFKLAAADIKRLIDRTQFAISTEETRYYLNGIYLHSAGSAKNATLRGVA 176
Query: 175 SDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNI 234
+DGHRL + + +IIPRKTV +QRL+E+ E V +++S +I+ N+
Sbjct: 177 TDGHRLAQVDLALPNGAEGMPGVIIPRKTVGEVQRLIEDNEAEVGIELSQGKIRFTIGNV 236
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+ SKLIDG F DY VI +K +V++ ++ R+S IS+++ + V+L +
Sbjct: 237 VLTSKLIDGTFPDYGRVIPQNNDKELIVDKKDFEAAVDRVSTISSERGRAVKLALSAG-- 294
Query: 295 KITVSSSNREKASSTD 310
K+ +S +N + S+T+
Sbjct: 295 KLVLSVTNPDSGSATE 310
>gi|424745194|ref|ZP_18173460.1| DNA polymerase III, beta subunit [Acinetobacter baumannii WC-141]
gi|422942271|gb|EKU37330.1| DNA polymerase III, beta subunit [Acinetobacter baumannii WC-141]
Length = 382
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 174/312 (55%), Gaps = 14/312 (4%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN--S 66
K ++L+ L V+ VE+++ L ILSN+ + N++ ++ +D EV++ T + G
Sbjct: 7 KESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTVLTEGACLE 66
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
+ V ARK ++I +SLP + + I E++ +KSG S+F L TL A++YP++T +
Sbjct: 67 AGETTVPARKLMEICKSLPTAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYPLLTTEN 126
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
+ ++Q+ LK + F++A QD+R+YL G LL + + AV++DGHRL ++
Sbjct: 127 SQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLRAVTTDGHRLALCEI 186
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFS-----------NI 234
S I+PRK V LQRLL ++ + L I + + + +
Sbjct: 187 TASSTSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPSRDKEQGNITV 246
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+KLIDGKF DY+ VI +K L++ + +SLQR++I+SN+KL+GV L + L
Sbjct: 247 RFTTKLIDGKFPDYRRVIPRGGDKHVLISHDVFKQSLQRVAILSNEKLRGVFLNFNQDSL 306
Query: 295 KITVSSSNREKA 306
++ ++ +++A
Sbjct: 307 QLRANNPEQDEA 318
>gi|402849361|ref|ZP_10897597.1| DNA polymerase III beta subunit [Rhodovulum sp. PH10]
gi|402500358|gb|EJW12034.1| DNA polymerase III beta subunit [Rhodovulum sp. PH10]
Length = 372
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/314 (31%), Positives = 177/314 (56%), Gaps = 10/314 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E++ +L L V +VE++N +PIL+N+LV + ++SF +TD ++++ A
Sbjct: 3 VTVERSELLRSLSHVHRVVERRNTIPILANVLVRADGAELSFKATDLDLEVVETIAAEVA 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ + V A F +I+R LPE ++ + E M I++G+SKFTLQTL ++P +
Sbjct: 63 GAGVTT-VPAHMFYEIVRKLPEGAQIGLDATGERAVMTIRAGRSKFTLQTLPESDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIAVSSDGH 178
+ F+LS LK +++ F+I+ ++ RYYLNG+ L + + AV++DGH
Sbjct: 122 AG-EMTHAFSLSAADLKRLIDKAQFAISTEETRYYLNGIFLHRVGEGPDAVLRAVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL Q +I+PRKTV + RL+E+ V++++S +I+ + + S
Sbjct: 181 RLAQVQFPAPAGTEGMPGVIVPRKTVGEVLRLIEDPAGEVKIELSATKIRFGIGAVVLTS 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY VI +K V ++ +++ R+S +++++ + V+L + + K+T+
Sbjct: 241 KLIDGTFPDYGRVIPTGNDKLLEVEKHDFEQAVDRVSTVASERGRAVKLSLSGS--KLTL 298
Query: 299 SSSNREKASSTDLI 312
S +N + S+T+ I
Sbjct: 299 SVTNPDSGSATEEI 312
>gi|299768252|ref|YP_003730278.1| DNA polymerase III subunit beta [Acinetobacter oleivorans DR1]
gi|298698340|gb|ADI88905.1| DNA polymerase III, beta subunit [Acinetobacter oleivorans DR1]
Length = 382
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 174/312 (55%), Gaps = 14/312 (4%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN--S 66
K ++L+ L V+ VE+++ L ILSN+ + N++ ++ +D EV++ T + G
Sbjct: 7 KESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTVLTEGACLE 66
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
+ V ARK ++I +SLP + + I E++ +KSG S+F L TL A++YP++T +
Sbjct: 67 AGETTVPARKLMEICKSLPTAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYPLLTTEN 126
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
+ ++Q+ LK + F++A QD+R+YL G LL + + AV++DGHRL ++
Sbjct: 127 SQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLRAVTTDGHRLALCEI 186
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFS-----------NI 234
S I+PRK V LQRLL ++ + L I + + + +
Sbjct: 187 TASSTSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPSRDKEQGDITV 246
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+KLIDGKF DY+ VI +K L++ + +SLQR++I+SN+KL+GV L + L
Sbjct: 247 RFTTKLIDGKFPDYRRVIPRGGDKHVLISHDVFKQSLQRVAILSNEKLRGVFLNFNQDSL 306
Query: 295 KITVSSSNREKA 306
++ ++ +++A
Sbjct: 307 QLRANNPEQDEA 318
>gi|212659801|gb|ACJ36980.1| DNA polymerase III subunit beta [Xylella fastidiosa]
Length = 270
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/268 (35%), Positives = 158/268 (58%), Gaps = 10/268 (3%)
Query: 13 LHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIV 72
L PL V+++VE++ IL+N+L+ N +++S TD EV++ + T + S I +
Sbjct: 8 LKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESG-EITI 66
Query: 73 AARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFT 132
ARK +I+R+LP+ ++++Y + + +++G+SKFTL TL A ++P S E T
Sbjct: 67 PARKIYEIVRALPDASQLSVYQSDDKITLQAGRSKFTLATLPANDFP-----SIDKIEVT 121
Query: 133 ----LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
+++ LK ++ F++AQQD+RYYLNGLL + + V++DGHRL + ++
Sbjct: 122 ERIIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLRDTKLRCVATDGHRLALCETELE 181
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ II+PRK V LQRLLE + +EL+I+ N I++ ++ SKLIDG F DY
Sbjct: 182 QAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDY 241
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISI 276
+ VI ++ V R L +LQR +I
Sbjct: 242 EGVIPIGADREVKVAREVLRDALQRAAI 269
>gi|316931398|ref|YP_004106380.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris DX-1]
gi|315599112|gb|ADU41647.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris DX-1]
Length = 372
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 175/312 (56%), Gaps = 10/312 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ +L L V +VE++N +PIL N+LV + +++ +TD ++++T T
Sbjct: 3 VTVERAQLLKSLSHVHRVVERRNTIPILGNVLVRAENAQLALKATDLDLEVTE-TLPAET 61
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPIMT 122
++ + V A F DI+R LP+ ++ + + + I++G+S+FTLQTL ++P +
Sbjct: 62 ATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSVLAIRAGRSRFTLQTLPESDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGH 178
+ F L +K +++ F+I+ ++ RYYLNG+ L S ++ AV++DGH
Sbjct: 122 AG-EMSHAFRLPASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSSGAASLRAVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL + + +I+PRKTV +QRL+E+ E + +++S +I+ N+ + S
Sbjct: 181 RLAQLDLTLPSGADGMPGVIVPRKTVGEVQRLIEDTEAEIGIELSTGKIRFTLGNVVLTS 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY VI +K LV++ ++ R+S IS+++ + V+L + K+ +
Sbjct: 241 KLIDGTFPDYGRVIPQNNDKELLVDKKDFEAAVDRVSTISSERGRAVKLALSAG--KLVL 298
Query: 299 SSSNREKASSTD 310
S +N + S+T+
Sbjct: 299 SVTNPDSGSATE 310
>gi|406037444|ref|ZP_11044808.1| DNA polymerase III subunit beta [Acinetobacter parvus DSM 16617 =
CIP 108168]
Length = 382
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 175/318 (55%), Gaps = 15/318 (4%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN--S 66
K ++L+ L V+ VE+++ L ILSN+ + + ++ +D EV++ T + G
Sbjct: 7 KESLLNVLSHVVGAVERRHTLNILSNVKIQTTQQALTITGSDLEVELVASTTLAEGACLQ 66
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
+ V ARK ++I +SLP + + I E++ +KSG S+F L TL A++YP++T +
Sbjct: 67 AGETTVPARKLVEICKSLPTAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYPLLTTEN 126
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
+ ++Q+ LK + F++A QD+R+YL G LL + + V++DGHRL +V
Sbjct: 127 SQGTQVQVTQRELKRLFEKTSFAMAVQDVRFYLTGTLLEIDQNQLRTVTTDGHRLALCEV 186
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSN-----------I 234
+ S+ I+PRK V LQRLL ++ + L I + I + +
Sbjct: 187 SATSTASASIQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNITINTPSRDKEQGDITV 246
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+KLIDGKF DY+ VI +K L+ + SLQR++I+SN+KL+GV L + L
Sbjct: 247 RFTTKLIDGKFPDYRRVIPRGGDKHVLIAHDVFKHSLQRVAILSNEKLRGVFLNFSQDTL 306
Query: 295 KITVSSSNREKASSTDLI 312
++ ++ +++AS DL+
Sbjct: 307 QLRANNPEQDEASE-DLV 323
>gi|163802134|ref|ZP_02196029.1| DNA polymerase III subunit beta [Vibrio sp. AND4]
gi|159173939|gb|EDP58749.1| DNA polymerase III subunit beta [Vibrio sp. AND4]
Length = 366
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ +S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELVSKVTLEGDFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V +RKF+DI R LP+ +T +E + ++S +S+F+L TL A ++P + + +
Sbjct: 66 GSITVPSRKFLDICRGLPDDSIITFVLEGDRVQVRSSRSRFSLSTLPANDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ E +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVEVSLTQSDLRSLVEKTQFSMANQDVRYYLNGMLFEIDGSTLRSVATDGHRMAVSQTQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK + L +L++ E PV L+I ++ ++ +N SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGIQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ ++L ++ R +I+SN+K +GVR+ + + ++IT ++ +E+A
Sbjct: 244 YRRVLPQSTNKTLETGCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITANNPEQEEA 302
>gi|262281563|ref|ZP_06059342.1| DNA polymerase subunit III [Acinetobacter calcoaceticus RUH2202]
gi|262257022|gb|EEY75761.1| DNA polymerase subunit III [Acinetobacter calcoaceticus RUH2202]
Length = 382
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 174/312 (55%), Gaps = 14/312 (4%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN--S 66
K ++L+ L V+ VE+++ L ILSN+ + N++ ++ +D EV++ T + G
Sbjct: 7 KESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTVLSEGACLE 66
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
+ V ARK ++I +SLP + + I E++ +KSG S+F L TL A++YP++T +
Sbjct: 67 AGETTVPARKLMEICKSLPTAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYPLLTTEN 126
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
+ ++Q+ LK + F++A QD+R+YL G LL + + AV++DGHRL ++
Sbjct: 127 SQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLRAVTTDGHRLALCEI 186
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFS-----------NI 234
+ I+PRK V LQRLL ++ + L I + + + +
Sbjct: 187 TASSTSAQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPSRDKEQGNITV 246
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+KLIDGKF DY+ VI +K L++ + +SLQR++I+SN+KL+GV L + L
Sbjct: 247 RFTTKLIDGKFPDYRRVIPRGGDKHVLISHDVFKQSLQRVAILSNEKLRGVFLNFNQDSL 306
Query: 295 KITVSSSNREKA 306
++ ++ +++A
Sbjct: 307 QLRANNPEQDEA 318
>gi|153875362|ref|ZP_02003200.1| DNA polymerase III, beta chain [Beggiatoa sp. PS]
gi|152068174|gb|EDN66800.1| DNA polymerase III, beta chain [Beggiatoa sp. PS]
Length = 375
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/305 (35%), Positives = 168/305 (55%), Gaps = 17/305 (5%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
+ +L PL+M+ +VE++ LPIL+N L+ + F +TD EV+I + N
Sbjct: 7 RKELLTPLKMITGVVEQRQTLPILANTLIDVTDNTLHFTATDAEVEIACSLPLSSDNLGT 66
Query: 69 N----IIVAARKFIDILRSLPETE----KVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + ARKF DI R+L + + +V+I E +K+GKSKF LQTL A ++P
Sbjct: 67 DHEGKTTLPARKFFDICRALSDDKNAKIQVSIEDETSQAIVKAGKSKFKLQTLPADDFPA 126
Query: 121 MTLNSKYDF--EFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGH 178
+ D EF++SQ LK +L+ F +A D+RYYL GLLL I + +DGH
Sbjct: 127 ---GPEIDATAEFSISQFHLKDLLHKTAFCVAINDVRYYLTGLLLEISDGKISLIGTDGH 183
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLL-ENKENPVELKISNNQIKIIFSNIEII 237
R+ Q + + + + +IIPRK V L +LL +++E VE+ +N I+ S+ I+
Sbjct: 184 RMAVAQHDFEGE--ENAQVIIPRKAVLELSKLLADDEETSVEVSFDDNHIEFKLSDSLIM 241
Query: 238 -SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
SKLIDG F D+ VI + K + L ++L R SI+SN+K KG+R + N L I
Sbjct: 242 RSKLIDGNFPDWHAVIPSDPNKIVIAETAPLKQALTRASILSNEKYKGIRFTLTENLLTI 301
Query: 297 TVSSS 301
+ ++
Sbjct: 302 SAKNA 306
>gi|209551896|ref|YP_002283813.1| DNA polymerase III subunit beta [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537652|gb|ACI57587.1| DNA polymerase III, beta subunit [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 372
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/309 (32%), Positives = 175/309 (56%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + + +TD +++IT T S
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPASVEQSG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A DI+R LP+ +V + + M ++SG+SKF+LQ L ++P +T +
Sbjct: 66 ATT-VPAHLLYDIVRKLPDGSEVLLATSSDGGSMTVQSGRSKFSLQCLPESDFPDLTAGT 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL-SFQKKN---IIAVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ + + K + AV++DGHRL
Sbjct: 125 -FTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESKGELKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V+ IIIPRKTV LQ+L++N E V +++S+ +I++ +I + SKLI
Sbjct: 184 RADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEVTVTVEVSDAKIRLTIGSIVMTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ +++ R+S IS+++ + V+L + L +TV +
Sbjct: 244 DGTFPDYQRVIPTGNDKEMRVDCTTFAQAVDRVSTISSERGRAVKLALSEGQLMLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|220920056|ref|YP_002495357.1| DNA polymerase III subunit beta [Methylobacterium nodulans ORS
2060]
gi|219944662|gb|ACL55054.1| DNA polymerase III, beta subunit [Methylobacterium nodulans ORS
2060]
Length = 373
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 177/313 (56%), Gaps = 11/313 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ A+L L V +VE++N +PILSN+L+ +++ + +TD ++++T
Sbjct: 3 VTVERAALLRSLGHVHRVVERRNTIPILSNVLLRSSADGLQLKATDLDIEVTETIPADVA 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ V A DI+R LPE +V++ + M I+SG+S+FTL L ++P +
Sbjct: 63 DGGATT-VPAHVIYDIVRKLPEGAQVSLETTGDTGQMLIRSGRSRFTLGALPETDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL-SFQKKNII---AVSSDGH 178
+ F L LK +++ F+I+ ++ RYYLNG+ + + + + AV++DGH
Sbjct: 122 AG-ELPHRFQLQAAELKKLIDKTQFAISTEETRYYLNGIFFHTIEAEGGVKLRAVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFS-NIEII 237
RL ++ + II+PRK V +Q+L+E+ + V ++IS+ +++ FS + +I
Sbjct: 181 RLARVEMPAPEGSHGMPGIIVPRKAVAEIQKLVEDGGDSVGVEISSAKVRFTFSTGVMLI 240
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKLIDG F DY+ VI +K V R++ +++ R+S IS+++ + V+L + L ++
Sbjct: 241 SKLIDGTFPDYQRVIPTGNDKLLTVERDQFAKAVDRVSTISSERGRAVKLAVAGGRLSLS 300
Query: 298 VSSSNREKASSTD 310
V +N + S+T+
Sbjct: 301 V--NNPDSGSATE 311
>gi|381159069|ref|ZP_09868302.1| DNA polymerase III, beta subunit [Thiorhodovibrio sp. 970]
gi|380880427|gb|EIC22518.1| DNA polymerase III, beta subunit [Thiorhodovibrio sp. 970]
Length = 369
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 167/298 (56%), Gaps = 5/298 (1%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
+ ++ ++ L V ++VE++ LPILSN+L+ + +TD E+QI++ A
Sbjct: 3 IEVQREDLVPALTSVAAVVERRQTLPILSNLLIKTTEDGFLLTATDLELQISSNIASKVV 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLN 124
I + A+KF D+ ++LPE ++++ + + +++ G+S+F+L TL A++YP +
Sbjct: 63 EPGA-ITLPAKKFADVCKALPENSRISLEVSDTRGYVRCGRSRFSLSTLPAEDYPGLE-G 120
Query: 125 SKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQ 184
+ F + L ++ F++A QD+RYYLNGLLL ++ V++DGHRL +
Sbjct: 121 EASEQAFEVETAVLARMIERTSFAMAHQDVRYYLNGLLLEICPGRLVTVATDGHRLAKAE 180
Query: 185 --VNIDKKFSSCSDIIIPRKTVFTLQRLLENK-ENPVELKISNNQIKIIFSNIEIISKLI 241
V+ + + +I+P KTV L+RLL K L+I + + I N + +KLI
Sbjct: 181 SAVSALQSWEDKRQLILPEKTVAELKRLLAGKVGETTRLEIGDRTVVIRVGNNVVTTKLI 240
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
DG++ DY VI + + S L+ R + SL R +++S +K KGVR+ + LK+ VS
Sbjct: 241 DGRYPDYSRVIPTQLQHSALLEREAVKDSLARTAVLSYEKQKGVRMTFEEGTLKLEVS 298
>gi|410647424|ref|ZP_11357856.1| DNA polymerase III subunit beta [Glaciecola agarilytica NO2]
gi|410133014|dbj|GAC06255.1| DNA polymerase III subunit beta [Glaciecola agarilytica NO2]
Length = 319
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 149/237 (62%), Gaps = 1/237 (0%)
Query: 70 IIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDF 129
I V A+K +DI+R L E +++ +I+ I+ G+SK++L TL A +YP + + + +
Sbjct: 20 ITVPAKKLLDIIRGLAEGSEISFHIDGSKAIIRCGRSKYSLSTLSATDYPNLE-DWQGEL 78
Query: 130 EFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDK 189
EF +SQ LK +++ V+FS+AQQD+RYYLNG+ L + I V++DGHRL ++N
Sbjct: 79 EFEISQSNLKRLIDSVHFSMAQQDVRYYLNGMSLETEDNVIRTVATDGHRLALCRLNYTD 138
Query: 190 KFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYK 249
+IIPRK V + RL+E+ + +++++ +N I+I ++ SKL+DG+F DY+
Sbjct: 139 ATLPNRQVIIPRKGVMEITRLIEDSDKSLKVQVGSNHIRIFSNDFIFTSKLVDGRFPDYR 198
Query: 250 YVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
V+ +K+ + ++ L + R SI+SN+K KGVRL + +KIT ++ +E+A
Sbjct: 199 RVLPKDGDKNIIASKLGLKNAFSRASILSNEKFKGVRLNLSSGEVKITANNPEQEEA 255
>gi|209966326|ref|YP_002299241.1| DNA polymerase III subunit beta [Rhodospirillum centenum SW]
gi|209959792|gb|ACJ00429.1| DNA polymerase III, beta subunit [Rhodospirillum centenum SW]
Length = 374
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/314 (29%), Positives = 171/314 (54%), Gaps = 12/314 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
+ E+ A+L L V S+VE++N +PILSN+++ + ++S +TD +++I
Sbjct: 3 ITIERAALLRSLGHVQSVVERRNTIPILSNVMLRAENGELSLTATDMDLEIVESVPADIA 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLN 124
+ A DI R LP+ +V + + ++SG+S+F L TL +YP M+
Sbjct: 63 RPG-SATAPAHTLYDIARKLPDGSQVELDSTGDMLTLRSGRSQFKLGTLPVDDYPAMS-G 120
Query: 125 SKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL--------SFQKKNIIAVSSD 176
F+LS LK +++ F+I+ ++ RYYLNG+ L + + AV++D
Sbjct: 121 GDMGHRFSLSAADLKALIDRTRFAISTEETRYYLNGIFLHASTARGAGGETPVLRAVATD 180
Query: 177 GHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEI 236
GHRL ++ + + + +IIPRK V +++LL+ + +E+++S+ +++ F I +
Sbjct: 181 GHRLARVEMPLPEGAAGIPGVIIPRKAVLEVRKLLDEAADRIEVQLSDTKVRFAFDAITL 240
Query: 237 ISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
SKLIDG F DY+ VI +K V+ ++ R++ IS +K + V+L + L
Sbjct: 241 TSKLIDGTFPDYERVIPTGNDKVLEVDPRLFAGAVDRVATISTEKSRAVKLSLDRGVL-- 298
Query: 297 TVSSSNREKASSTD 310
T+S+S+ E S+T+
Sbjct: 299 TLSASSPEAGSATE 312
>gi|118590459|ref|ZP_01547861.1| DNA polymerase III subunit beta [Stappia aggregata IAM 12614]
gi|118436922|gb|EAV43561.1| DNA polymerase III subunit beta [Stappia aggregata IAM 12614]
Length = 372
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 176/309 (56%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L L V +VE++N +PILSN+L+ + I+ +TD +++I
Sbjct: 6 ERTDLLKSLTHVHRVVERRNTIPILSNVLLRADGGAINLKATDLDLEIVESVPAMIEMPG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A F DI+R LPE +V + +N + I++G+SKFTLQ L ++P +T
Sbjct: 66 ATT-VPAHMFYDIVRKLPEGSQVVLETTSDNATLEIRAGRSKFTLQMLPETDFPDLTAG- 123
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGHRLT 181
+ F+L+ ++ +++ F+I+ ++ RYYLNG+ L + AV++DGHRL
Sbjct: 124 DFSHSFSLTGADIRKLIDATQFAISTEETRYYLNGIYLHTVDAGSGLQFRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
+V + II+PRKTV +Q+LLE+ E V++++S+ +I++ ++ + SKLI
Sbjct: 184 QAEVPAPSGSAGMPGIIVPRKTVGEIQKLLESPEASVQVELSDTKIRLTTGSVILTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY VI +K V+R++ ++ R+S IS+++ + V+L + +L +TV +
Sbjct: 244 DGTFPDYGRVIPQNNDKEMRVDRDEFKEAVDRVSTISSERGRAVKLSLTEGHLVLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|424889012|ref|ZP_18312615.1| DNA polymerase III, beta subunit [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393174561|gb|EJC74605.1| DNA polymerase III, beta subunit [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 372
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 175/309 (56%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + + +TD +++IT T +
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPASVEQAG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A DI+R LP+ +V + + M ++SG+SKF+LQ L ++P +T +
Sbjct: 66 ATT-VPAHLLYDIVRKLPDGSEVLLATSSDGGSMTVQSGRSKFSLQCLPESDFPDLTAGT 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL-SFQKKNII---AVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ + + K + AV++DGHRL
Sbjct: 125 -FTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESKGDLKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V+ IIIPRKTV LQ+L++N E V +++S+ +I++ +I + SKLI
Sbjct: 184 RADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEVTVTVEVSDAKIRLTIGSIVMTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ +++ R+S IS+++ + V+L + L +TV +
Sbjct: 244 DGTFPDYQRVIPTGNDKEMRVDCTSFAQAVDRVSTISSERGRAVKLALSEGQLMLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|424915873|ref|ZP_18339237.1| DNA polymerase III, beta subunit [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392852049|gb|EJB04570.1| DNA polymerase III, beta subunit [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 372
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 175/309 (56%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + + +TD +++IT T +
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPASVEQAG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A DI+R LP+ +V + + M ++SG+SKF+LQ L ++P +T +
Sbjct: 66 ATT-VPAHLLYDIVRKLPDGSEVLLATSSDGGSMTVQSGRSKFSLQCLPESDFPDLTAGT 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL-SFQKKN---IIAVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ + + K + AV++DGHRL
Sbjct: 125 -FTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESKGELKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V+ IIIPRKTV LQ+L++N E V +++S+ +I++ +I + SKLI
Sbjct: 184 RADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEVTVTVEVSDAKIRLTIGSIVMTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ +++ R+S IS+++ + V+L + L +TV +
Sbjct: 244 DGTFPDYQRVIPTGNDKEMRVDCTTFAQAVDRVSTISSERGRAVKLALSEGQLMLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|424897925|ref|ZP_18321499.1| DNA polymerase III, beta subunit [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393182152|gb|EJC82191.1| DNA polymerase III, beta subunit [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 372
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 175/309 (56%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + + +TD +++IT T +
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPASVEQAG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A DI+R LP+ +V + + M ++SG+SKF+LQ L ++P +T +
Sbjct: 66 ATT-VPAHLLYDIVRKLPDGSEVLLATSSDGGSMTVQSGRSKFSLQCLPESDFPDLTAGT 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL-SFQKKN---IIAVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ + + K + AV++DGHRL
Sbjct: 125 -FTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESKGELKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V+ IIIPRKTV LQ+L++N E V +++S+ +I++ +I + SKLI
Sbjct: 184 RADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEVTVTVEVSDAKIRLTIGSIVMTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ +++ R+S IS+++ + V+L + L +TV +
Sbjct: 244 DGTFPDYQRVIPTGNDKEMRVDCTSFAQAVDRVSTISSERGRAVKLALSDGQLMLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|212659819|gb|ACJ36984.1| DNA polymerase III subunit beta [Xylella fastidiosa]
Length = 264
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/268 (35%), Positives = 157/268 (58%), Gaps = 10/268 (3%)
Query: 13 LHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIV 72
L PL V+++VE++ IL+N+L+ N +++S TD EV++ + T + S I +
Sbjct: 3 LKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESG-EITI 61
Query: 73 AARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFT 132
ARK +I+R+LP+ ++++Y + + +++G+SKFTL TL A ++P S E T
Sbjct: 62 PARKIYEIVRALPDASQLSVYQSDDKITLQAGRSKFTLATLPANDFP-----SIDKIEVT 116
Query: 133 ----LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
+++ LK ++ F++AQQD+RYYLNGLL + + V++DGHRL + ++
Sbjct: 117 ERIIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLRDTKLRCVATDGHRLALCETELE 176
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ II+PRK V LQRLLE + +EL+I+ N I++ ++ SKLIDG F DY
Sbjct: 177 QAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDY 236
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISI 276
+ VI ++ V R L +LQR +
Sbjct: 237 EGVIPIGADREVKVAREVLRDALQRAQV 264
>gi|115522032|ref|YP_778943.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris BisA53]
gi|115515979|gb|ABJ03963.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris
BisA53]
Length = 372
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 172/312 (55%), Gaps = 10/312 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ +L L V +VE++N +PIL N+LV ++S +TD ++++T
Sbjct: 3 VTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAEKGRLSLKATDLDLEVTESLPAETA 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPIMT 122
V A F DI+R LP+ ++ + + + + I++G+S+FTLQTL ++P +
Sbjct: 63 TPGATT-VPAHMFYDIVRKLPDGSQIVLESDGERAVLAIRAGRSRFTLQTLPETDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGH 178
+ F L +K +++ F+I+ ++ RYYLNG+ L S + AV++DGH
Sbjct: 122 AG-EMTHSFALPASDVKRLIDRTQFAISTEETRYYLNGIYLHSAGSAVAATLRAVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL + + + +I+PRKTV +QRL+E+ E V +++S N+I+ ++ + S
Sbjct: 181 RLAQLDLPLPSGAAGMPGVIVPRKTVGEVQRLIEDSEVSVGIELSTNKIRFTIGDVVLTS 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY VI +K +V++ ++ R+S IS+++ + V+L + K+ +
Sbjct: 241 KLIDGTFPDYGRVIPQNNDKELVVDKTDFEAAVDRVSTISSERGRAVKLALSAG--KLVL 298
Query: 299 SSSNREKASSTD 310
S +N + S+T+
Sbjct: 299 SVTNPDSGSATE 310
>gi|424879670|ref|ZP_18303302.1| DNA polymerase III, beta subunit [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392516033|gb|EIW40765.1| DNA polymerase III, beta subunit [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 372
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 173/309 (55%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + +K+ +TD +++IT T
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQKLDMKATDLDLEITEATPASVEQPG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A DI+R L + +V + + M ++SG+SKF+LQ L ++P +T +
Sbjct: 66 ATT-VPAHLLYDIVRKLSDGSEVLLATSPDGGAMTVQSGRSKFSLQCLPESDFPDLTAGT 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIAVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ + N + AV++DGHRL
Sbjct: 125 -FTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGQLKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V+ IIIPRKTV LQ+L++N E V +++S+ +I++ +I + SKLI
Sbjct: 184 RADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPETTVTVEVSDAKIRLTIGSIVMTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ +++ R+S IS+++ + V+L + L +TV +
Sbjct: 244 DGTFPDYQRVIPTGNDKEMRVDCTSFAQAVDRVSTISSERGRAVKLALSEGQLMLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|217979804|ref|YP_002363951.1| DNA polymerase III subunit beta [Methylocella silvestris BL2]
gi|217505180|gb|ACK52589.1| DNA polymerase III, beta subunit [Methylocella silvestris BL2]
Length = 372
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 174/310 (56%), Gaps = 10/310 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ A+L L V +VE++N +PILSN+L+ + + +TD ++++T A G
Sbjct: 3 VTLERAALLKSLGHVHRVVERRNTIPILSNVLLRAEGKSLLLKATDLDLEVTERLAADVG 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ + A DI+R LP+ +V++ I ++ + ++SG+S+F LQTL ++P +
Sbjct: 63 VAG-GTTLPAHTLYDIVRKLPDGSQVSLEIAGDSGQLLLRSGRSRFNLQTLPDSDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL-SFQKKN---IIAVSSDGH 178
+ +F L LK ++ F+I+ ++ RYYLNG+ + S + + + AV++DGH
Sbjct: 122 AGD-FSHDFLLPPADLKRLIEKTQFAISNEETRYYLNGIFMHSMEAEGASVLRAVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL ++ K S +I+PRK V +Q+L+E+ + +++S + + F ++ + +
Sbjct: 181 RLARVEIACPKGASGMPGVIVPRKAVTEVQKLIEDLSADIRVELSTTKARFTFGDVVLTT 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY VI +K +V R ++ R+S IS+++ + V+L I K+T+
Sbjct: 241 KLIDGTFPDYMRVIPAGNDKRLIVERGPFAAAVDRVSTISSERGRAVKLAIADG--KLTL 298
Query: 299 SSSNREKASS 308
S +N + S+
Sbjct: 299 SVTNPDSGSA 308
>gi|387823585|ref|YP_005823056.1| DNA polymerase III subunit beta [Francisella cf. novicida 3523]
gi|328675184|gb|AEB27859.1| DNA polymerase III beta subunit [Francisella cf. novicida 3523]
Length = 367
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 172/307 (56%), Gaps = 4/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M V+N ++ +L PLQ ++S+ K+ +P+LS IL ++ + ++D + +I+ A
Sbjct: 1 MNFVLN--RDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIA 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
V N+SI + + A K +I+RSL E + + + I S S F L +L+A YP+
Sbjct: 59 VS-CNTSIKLALNADKIYNIVRSLNENSMIDFRVNENKVTIVSNNSTFNLISLNADNYPL 117
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ N F LSQ+ I++ V FS+A D RY+LNG+ + AVS+DGHR+
Sbjct: 118 IDSNINEQASFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLRAVSTDGHRM 177
Query: 181 TYYQVNIDKK-FSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
+ + ID K S S IIP+K + L++++ E +++ + N +K IF N ISK
Sbjct: 178 SITEAIIDSKVLDSASQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYAFISK 237
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG++ DY+ VI K V++ SL R SI++NDK KGVRL I N L ++ +
Sbjct: 238 LIDGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLLLSAN 297
Query: 300 SSNREKA 306
+ + EKA
Sbjct: 298 NPDNEKA 304
>gi|212659810|gb|ACJ36982.1| DNA polymerase III subunit beta [Xylella fastidiosa]
Length = 264
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/268 (35%), Positives = 157/268 (58%), Gaps = 10/268 (3%)
Query: 13 LHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIV 72
L PL V+++VE++ IL+N+L+ N +++S TD EV++ + T + S I +
Sbjct: 2 LKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESG-EITI 60
Query: 73 AARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFT 132
ARK +I+R+LP+ ++++Y + + +++G+SKFTL TL A ++P S E T
Sbjct: 61 PARKIYEIVRALPDASQLSVYQSDDKITLQAGRSKFTLATLPANDFP-----SIDKIEVT 115
Query: 133 ----LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
+++ LK ++ F++AQQD+RYYLNGLL + + V++DGHRL + ++
Sbjct: 116 ERIIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLRDTKLRCVATDGHRLALCETELE 175
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ II+PRK V LQRLLE + +EL+I+ N I++ ++ SKLIDG F DY
Sbjct: 176 QAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDY 235
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISI 276
+ VI ++ V R L +LQR +
Sbjct: 236 EGVIPIGADREVKVAREVLRDALQRAQL 263
>gi|212659799|gb|ACJ36979.1| DNA polymerase III subunit beta [Xylella fastidiosa]
Length = 263
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/268 (35%), Positives = 157/268 (58%), Gaps = 10/268 (3%)
Query: 13 LHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIV 72
L PL V+++VE++ IL+N+L+ N +++S TD EV++ + T + S I +
Sbjct: 2 LKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESG-EITI 60
Query: 73 AARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFT 132
ARK +I+R+LP+ ++++Y + + +++G+SKFTL TL A ++P S E T
Sbjct: 61 PARKIYEIVRALPDASQLSVYQSDDKITLQAGRSKFTLATLPANDFP-----SIDKIEVT 115
Query: 133 ----LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
+++ LK ++ F++AQQD+RYYLNGLL + + V++DGHRL + ++
Sbjct: 116 ERIIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLRDTKLRCVATDGHRLALCETELE 175
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ II+PRK V LQRLLE + +EL+I+ N I++ ++ SKLIDG F DY
Sbjct: 176 QAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDY 235
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISI 276
+ VI ++ V R L +LQR +
Sbjct: 236 EGVIPIGADREVKVAREVLRDALQRAQL 263
>gi|86747129|ref|YP_483625.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris HaA2]
gi|86570157|gb|ABD04714.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris HaA2]
Length = 372
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 177/312 (56%), Gaps = 10/312 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ +L L V +VE++N +PIL N+LV + ++S +TD ++++T T
Sbjct: 3 VTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAQLSLKATDLDLEVTE-TLPAET 61
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPIMT 122
++ + V A F DI+R LP+ ++ + + + I++G+S+FTLQTL ++P +
Sbjct: 62 ATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSVLAIRAGRSRFTLQTLPESDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGH 178
+ F+L+ +K +++ F+I+ ++ RYYLNG+ L S + + AV++DGH
Sbjct: 122 AG-EMSHSFSLTASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSAKDAKLRAVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL + + +I+PRKTV +QRL+E+ + + L++S +I+ N+ + S
Sbjct: 181 RLAQVDLTQPAGAAGMPGVIVPRKTVGEVQRLIEDNDAEIGLELSVGKIRFTIGNVVLTS 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY VI +K +V++ ++ R+S IS+++ + V+L + K+ +
Sbjct: 241 KLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAG--KLVL 298
Query: 299 SSSNREKASSTD 310
S +N + S+T+
Sbjct: 299 SVTNPDSGSATE 310
>gi|421595897|ref|ZP_16039838.1| DNA polymerase III subunit beta, partial [Bradyrhizobium sp.
CCGE-LA001]
gi|404271992|gb|EJZ35731.1| DNA polymerase III subunit beta, partial [Bradyrhizobium sp.
CCGE-LA001]
Length = 312
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 176/312 (56%), Gaps = 10/312 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ +L L V +VE++N +PIL N+LV + K+S +TD ++++T T
Sbjct: 3 VTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAKLSLKATDLDLEVT-ETLPAET 61
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPIMT 122
++ + V A F DI+R LP+ ++ + + + I++G+S+FTLQTL ++P +
Sbjct: 62 ATAGSTTVPAHMFYDIVRKLPDGSQIVLEADGDRAVLAIRAGRSRFTLQTLPENDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGH 178
F+L+ K +K +++ F+I+ ++ RYYLNG+ L + + + V++DGH
Sbjct: 122 AGD-MSHSFSLAAKDVKRLIDRTQFAISTEETRYYLNGIYLHAAGTTKAATLRGVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL + K +I+PRKTV +QRL+E+ E + +++S +I+ N+ + S
Sbjct: 181 RLAQLDLVQPKGAEGMPGVIVPRKTVGEVQRLIEDTEAEMTIELSQAKIRFTIGNVVLTS 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY VI +K +V++ ++ R+S IS+++ + V+L + K+ +
Sbjct: 241 KLIDGTFPDYGRVIPQNNDKELVVDKKDFENAVDRVSTISSERGRAVKLSLSAG--KLVL 298
Query: 299 SSSNREKASSTD 310
S +N + S+T+
Sbjct: 299 SVTNPDSGSATE 310
>gi|254875663|ref|ZP_05248373.1| DNA polymerase III [Francisella tularensis subsp. tularensis
MA00-2987]
gi|254841662|gb|EET20098.1| DNA polymerase III [Francisella tularensis subsp. tularensis
MA00-2987]
Length = 329
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 172/307 (56%), Gaps = 4/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M V+N ++ +L PLQ ++S+ K+ +P+LS IL ++ + ++D + +I+ A
Sbjct: 1 MNFVLN--RDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIA 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
V N++I + + A K +I+RSL E + I + I S S F L +L+A YP+
Sbjct: 59 VS-CNTTIKLALNADKIYNIVRSLNENSMIDFRINENKVTIVSNNSTFNLISLNADNYPL 117
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ N F LSQ+ I++ V FS+A D RY+LNG+ + AVS+DGHR+
Sbjct: 118 IDSNINEQASFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLRAVSTDGHRM 177
Query: 181 TYYQVNIDKK-FSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
+ + ID K S S IIP+K + L++++ E +++ + N +K IF N ISK
Sbjct: 178 SITEAIIDSKVLDSASQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYAFISK 237
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG++ DY+ VI K V++ SL R SI++NDK KGVRL I N L ++ +
Sbjct: 238 LIDGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLLLSAN 297
Query: 300 SSNREKA 306
+ + EKA
Sbjct: 298 NPDNEKA 304
>gi|262377660|ref|ZP_06070880.1| DNA polymerase III, beta subunit [Acinetobacter lwoffii SH145]
gi|262307419|gb|EEY88562.1| DNA polymerase III, beta subunit [Acinetobacter lwoffii SH145]
Length = 382
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 100/312 (32%), Positives = 170/312 (54%), Gaps = 14/312 (4%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN--S 66
K ++L+ L V+ VE+++ L ILSN+ + ++ ++ +D EV++ TA+ G
Sbjct: 7 KESLLNVLSHVVGAVERRHTLNILSNLKIQVTAQALTVTGSDLEVELVASTALAEGACLQ 66
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V ARK IDI +SLP V ++I E++ +KSG S+F L TL A +YP++ +
Sbjct: 67 EGETTVPARKLIDICKSLPSAALVDLHITEDQRCILKSGNSRFVLGTLPADDYPLLNTEN 126
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
+ T++Q+ LK + F++A QD+R+YL G LL + AV++DGHRL +
Sbjct: 127 TQGTQVTVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDANQLRAVTTDGHRLALCET 186
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSN-----------I 234
+ I+PRK V LQRLL ++ + L I + + + +
Sbjct: 187 VAQSTATQPIQAIVPRKAVAELQRLLSVEDEQLSLLIGRELLNVTINMSSRDKEQADIIV 246
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+KLIDGKF DY+ VI +K ++ + +SLQR++I+SN+KL+GV L + L
Sbjct: 247 RFTTKLIDGKFPDYRRVIPRGGDKVVMIAHDVFKQSLQRVAILSNEKLRGVFLNFNADSL 306
Query: 295 KITVSSSNREKA 306
++ ++ +++A
Sbjct: 307 QLRANNPEQDEA 318
>gi|260774540|ref|ZP_05883453.1| DNA polymerase III beta subunit [Vibrio metschnikovii CIP 69.14]
gi|260610446|gb|EEX35652.1| DNA polymerase III beta subunit [Vibrio metschnikovii CIP 69.14]
Length = 308
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 146/238 (61%), Gaps = 2/238 (0%)
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
+I V ARKF+DI R LP++ +T+ +E + I+SG+S+F+L TL A ++P + + + D
Sbjct: 9 SITVPARKFLDICRGLPDSAVITVLLEGDRISIRSGRSRFSLATLPANDFPNIE-DWQSD 67
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
+ T++Q L+ ++ FS+A QD+RYYLNG++ + AV++DGHR+ Q +
Sbjct: 68 IDITVTQAELRGLIEKTQFSMANQDVRYYLNGMMFEIDASTLRAVATDGHRMAVAQTTVS 127
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ ++ II PRK + L +LL+ E PV L+I + ++ + SKL+DG+F DY
Sbjct: 128 QALAN-KQIIFPRKGILELVKLLDAPEQPVVLQIGASNLRAEVNQFVFTSKLVDGRFPDY 186
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ V+ K+ + ++L ++ R +I+SN+K +GVR+ + ++IT ++ +E+A
Sbjct: 187 RRVLPQNTNKTLITGCDELRQAFSRAAILSNEKFRGVRVNLAEGTMRITANNPEQEEA 244
>gi|56707189|ref|YP_169085.1| DNA polymerase III subunit beta [Francisella tularensis subsp.
tularensis SCHU S4]
gi|89255451|ref|YP_512812.1| DNA polymerase III subunit beta [Francisella tularensis subsp.
holarctica LVS]
gi|110669659|ref|YP_666216.1| DNA polymerase III subunit beta [Francisella tularensis subsp.
tularensis FSC198]
gi|115313983|ref|YP_762706.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
holarctica OSU18]
gi|134301171|ref|YP_001121139.1| DNA polymerase III subunit beta [Francisella tularensis subsp.
tularensis WY96-3418]
gi|156501372|ref|YP_001427436.1| DNA polymerase III subunit beta [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|208780098|ref|ZP_03247441.1| DNA polymerase III, beta subunit [Francisella novicida FTG]
gi|254366861|ref|ZP_04982899.1| DNA polymerase III, beta chain [Francisella tularensis subsp.
holarctica 257]
gi|254368433|ref|ZP_04984450.1| DNA polymerase III [Francisella tularensis subsp. holarctica
FSC022]
gi|254371403|ref|ZP_04987404.1| DNA polymerase III [Francisella tularensis subsp. tularensis
FSC033]
gi|379716392|ref|YP_005304728.1| DNA polymerase III subunit beta [Francisella tularensis subsp.
tularensis TIGB03]
gi|379725075|ref|YP_005317261.1| DNA polymerase III subunit beta [Francisella tularensis subsp.
tularensis TI0902]
gi|385793753|ref|YP_005830159.1| DNA polymerase III subunit beta [Francisella tularensis subsp.
tularensis NE061598]
gi|421750887|ref|ZP_16187949.1| DNA polymerase III subunit beta [Francisella tularensis subsp.
tularensis AS_713]
gi|421752743|ref|ZP_16189758.1| DNA polymerase III subunit beta [Francisella tularensis subsp.
tularensis 831]
gi|421754607|ref|ZP_16191575.1| DNA polymerase III subunit beta [Francisella tularensis subsp.
tularensis 80700075]
gi|421756472|ref|ZP_16193381.1| DNA polymerase III subunit beta [Francisella tularensis subsp.
tularensis 80700103]
gi|421758339|ref|ZP_16195189.1| DNA polymerase III subunit beta [Francisella tularensis subsp.
tularensis 70102010]
gi|422937997|ref|YP_007011144.1| DNA polymerase III subunit beta [Francisella tularensis subsp.
holarctica FSC200]
gi|423049752|ref|YP_007008186.1| DNA polymerase III subunit beta [Francisella tularensis subsp.
holarctica F92]
gi|424673577|ref|ZP_18110515.1| DNA polymerase III subunit beta [Francisella tularensis subsp.
tularensis 70001275]
gi|56603681|emb|CAG44635.1| DNA polymerase III, beta chain [Francisella tularensis subsp.
tularensis SCHU S4]
gi|89143282|emb|CAJ78443.1| DNA polymerase III, beta chain [Francisella tularensis subsp.
holarctica LVS]
gi|110319992|emb|CAL08018.1| DNA polymerase III, beta chain [Francisella tularensis subsp.
tularensis FSC198]
gi|115128882|gb|ABI82069.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
holarctica OSU18]
gi|134048948|gb|ABO46019.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
tularensis WY96-3418]
gi|134252689|gb|EBA51783.1| DNA polymerase III, beta chain [Francisella tularensis subsp.
holarctica 257]
gi|151569642|gb|EDN35296.1| DNA polymerase III [Francisella tularensis subsp. tularensis
FSC033]
gi|156251975|gb|ABU60481.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|157121327|gb|EDO65528.1| DNA polymerase III [Francisella tularensis subsp. holarctica
FSC022]
gi|208744102|gb|EDZ90403.1| DNA polymerase III, beta subunit [Francisella novicida FTG]
gi|282158288|gb|ADA77679.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
tularensis NE061598]
gi|377826524|gb|AFB79772.1| DNA polymerase III beta subunit [Francisella tularensis subsp.
tularensis TI0902]
gi|377828069|gb|AFB78148.1| DNA polymerase III beta subunit [Francisella tularensis subsp.
tularensis TIGB03]
gi|407293148|gb|AFT92054.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
holarctica FSC200]
gi|409089448|gb|EKM89490.1| DNA polymerase III subunit beta [Francisella tularensis subsp.
tularensis AS_713]
gi|409089477|gb|EKM89518.1| DNA polymerase III subunit beta [Francisella tularensis subsp.
tularensis 831]
gi|409090767|gb|EKM90776.1| DNA polymerase III subunit beta [Francisella tularensis subsp.
tularensis 80700075]
gi|409092591|gb|EKM92561.1| DNA polymerase III subunit beta [Francisella tularensis subsp.
tularensis 70102010]
gi|409093543|gb|EKM93483.1| DNA polymerase III subunit beta [Francisella tularensis subsp.
tularensis 80700103]
gi|417435774|gb|EKT90645.1| DNA polymerase III subunit beta [Francisella tularensis subsp.
tularensis 70001275]
gi|421950474|gb|AFX69723.1| DNA polymerase III subunit beta [Francisella tularensis subsp.
holarctica F92]
Length = 367
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 172/307 (56%), Gaps = 4/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M V+N ++ +L PLQ ++S+ K+ +P+LS IL ++ + ++D + +I+ A
Sbjct: 1 MNFVLN--RDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIA 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
V N++I + + A K +I+RSL E + I + I S S F L +L+A YP+
Sbjct: 59 VS-CNTTIKLALNADKIYNIVRSLNENSMIDFRINENKVTIVSNNSTFNLISLNADNYPL 117
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ N F LSQ+ I++ V FS+A D RY+LNG+ + AVS+DGHR+
Sbjct: 118 IDSNINEQASFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLRAVSTDGHRM 177
Query: 181 TYYQVNIDKK-FSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
+ + ID K S S IIP+K + L++++ E +++ + N +K IF N ISK
Sbjct: 178 SITEAIIDSKVLDSASQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYAFISK 237
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG++ DY+ VI K V++ SL R SI++NDK KGVRL I N L ++ +
Sbjct: 238 LIDGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLLLSAN 297
Query: 300 SSNREKA 306
+ + EKA
Sbjct: 298 NPDNEKA 304
>gi|294085124|ref|YP_003551884.1| DNA polymerase III subunit beta [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292664699|gb|ADE39800.1| DNA polymerase III, beta subunit [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 367
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 176/311 (56%), Gaps = 7/311 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L ++ + ++L PL V S+VE++N +PIL+N+++ ++S +TD ++ ITT
Sbjct: 1 MKLAID--RMSLLRPLGHVQSVVERRNTIPILANVVLRAEDGQLSLTATDMDMDITTEVG 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + +A DI+R LP+ +V + + + H I +G+S F L TL +++P
Sbjct: 59 CAVATAGTTTM-SAHMLYDIVRKLPDGSEVELSVGDGHAMISAGRSSFRLPTLPVEDFPA 117
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLS-FQKKNIIAVSSDGHR 179
++ N + F L+ + +++ F+I+ ++ RYYLNG+ L ++ AV++DGHR
Sbjct: 118 ISSN-ELPTNFVLTAADFRDLIDATKFAISTEETRYYLNGIYLHKSDAGDLCAVATDGHR 176
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L + + + II+PRK V L++LL++ + V + +S + + F + + +K
Sbjct: 177 LAMTKQTLPGGAAQMPSIILPRKAVGELRKLLDDYDGDVTISMSETRAEFAFGAVRLTTK 236
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG F DY VI +K V+ ++ R+S IS++K K V++ ++ + T+S
Sbjct: 237 LIDGTFPDYTRVIPTNNDKIMQVDVGAFSAAVDRVSTISSEKSKSVKIGLRAGVM--TLS 294
Query: 300 SSNREKASSTD 310
+SN + +S+T+
Sbjct: 295 ASNTDASSATE 305
>gi|212659784|gb|ACJ36976.1| DNA polymerase III subunit beta [Xylella fastidiosa]
Length = 265
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 158/266 (59%), Gaps = 10/266 (3%)
Query: 22 IVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDIL 81
+VE++ IL+N+L+ N +++S TD EV++ + T + S I + ARK +I+
Sbjct: 4 VVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTKIEDPESG-EITIPARKIYEIV 62
Query: 82 RSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFT----LSQKT 137
R+LP+ ++++Y + + +++G+S+FTL TL A ++P S E T +++
Sbjct: 63 RALPDASQLSVYQSDDKITLQAGRSRFTLATLPANDFP-----SIDKIEVTERIIIAEVL 117
Query: 138 LKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDI 197
LK ++ F++AQQD+RYYLNGLL + + V++DGHRL + +++ I
Sbjct: 118 LKELIERTAFAMAQQDVRYYLNGLLFDLRDTKLRCVATDGHRLALCETELEQAKDLKRQI 177
Query: 198 IIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVISNKYE 257
I+PRK V LQRLLE + +EL+I+ N I++ ++ SKLIDG F DY+ VI +
Sbjct: 178 ILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVIPIGAD 237
Query: 258 KSFLVNRNKLLRSLQRISIISNDKLK 283
+ V R L +LQR +I+SN+K +
Sbjct: 238 REVKVAREVLRDALQRAAILSNEKYR 263
>gi|187930915|ref|YP_001890899.1| DNA polymerase III subunit beta [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187711824|gb|ACD30121.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 367
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 172/307 (56%), Gaps = 4/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M V+N ++ +L PLQ ++S+ K+ +P+LS IL ++ + ++D + +I+ A
Sbjct: 1 MNFVLN--RDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIA 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
V N++I + + A K +I+RSL E + I + I S S F L +L+A YP+
Sbjct: 59 VS-CNTTIKLALNADKIYNIVRSLNENSMIDFRINENKVTIVSNNSTFNLISLNADNYPL 117
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ N F LSQ+ I++ V FS+A D RY+LNG+ + AVS+DGHR+
Sbjct: 118 IDSNINEQASFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLRAVSTDGHRM 177
Query: 181 TYYQVNIDKK-FSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
+ + ID K S S IIP+K + L++++ E +++ + N +K IF N ISK
Sbjct: 178 SITEAIIDSKVLDSASKSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYAFISK 237
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG++ DY+ VI K V++ SL R SI++NDK KGVRL I N L ++ +
Sbjct: 238 LIDGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLLLSAN 297
Query: 300 SSNREKA 306
+ + EKA
Sbjct: 298 NPDNEKA 304
>gi|118496617|ref|YP_897667.1| DNA polymerase III subunit beta [Francisella novicida U112]
gi|194323923|ref|ZP_03057698.1| DNA polymerase III, beta subunit [Francisella novicida FTE]
gi|254372004|ref|ZP_04987497.1| hypothetical protein FTCG_01143 [Francisella tularensis subsp.
novicida GA99-3549]
gi|254375146|ref|ZP_04990626.1| DNA polymerase III [Francisella novicida GA99-3548]
gi|385791934|ref|YP_005824910.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|118422523|gb|ABK88913.1| DNA polymerase III, beta subunit [Francisella novicida U112]
gi|151569735|gb|EDN35389.1| hypothetical protein FTCG_01143 [Francisella novicida GA99-3549]
gi|151572864|gb|EDN38518.1| DNA polymerase III [Francisella novicida GA99-3548]
gi|194321820|gb|EDX19303.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
novicida FTE]
gi|328676080|gb|AEB26950.1| DNA polymerase III beta subunit [Francisella cf. novicida Fx1]
Length = 367
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 107/307 (34%), Positives = 172/307 (56%), Gaps = 4/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M V+N ++ +L PLQ ++S+ K+ +P+LS IL ++ + ++D + +I+ A
Sbjct: 1 MNFVLN--RDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIA 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
V N++I + + A K +I+RSL E + + + I S S F L +L+A YP+
Sbjct: 59 VS-CNTTIKLALNADKIYNIVRSLNENSMIDFRVNENKVTIVSNNSTFNLISLNADNYPL 117
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ N F LSQ+ I++ V FS+A D RY+LNG+ + AVS+DGHR+
Sbjct: 118 IDSNINEQASFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLRAVSTDGHRM 177
Query: 181 TYYQVNIDKK-FSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
+ + ID K S S IIP+K + L++++ E +++ + N +K IF N ISK
Sbjct: 178 SITEAIIDSKVLDSASQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYAFISK 237
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG++ DY+ VI K V++ SL R SI++NDK KGVRL I N L ++ +
Sbjct: 238 LIDGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLLLSAN 297
Query: 300 SSNREKA 306
+ + EKA
Sbjct: 298 NPDNEKA 304
>gi|212659788|gb|ACJ36978.1| DNA polymerase III subunit beta [Xylella fastidiosa]
Length = 263
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 158/266 (59%), Gaps = 10/266 (3%)
Query: 22 IVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDIL 81
+VE++ IL+N+L+ N +++S TD EV++ + T + S I + ARK +I+
Sbjct: 3 VVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTKIEDPESG-EITIPARKIYEIV 61
Query: 82 RSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFT----LSQKT 137
R+LP+ ++++Y + + +++G+S+FTL TL A ++P S E T +++
Sbjct: 62 RALPDASQLSVYQSDDKITLQAGRSRFTLATLPANDFP-----SIDKIEVTERIIIAEVL 116
Query: 138 LKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDI 197
LK ++ F++AQQD+RYYLNGLL + + V++DGHRL + +++ I
Sbjct: 117 LKELIERTAFAMAQQDVRYYLNGLLFDLRDTKLRCVATDGHRLALCETELEQAKDLKRQI 176
Query: 198 IIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVISNKYE 257
I+PRK V LQRLLE + +EL+I+ N I++ ++ SKLIDG F DY+ VI +
Sbjct: 177 ILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVIPIGAD 236
Query: 258 KSFLVNRNKLLRSLQRISIISNDKLK 283
+ V R L +LQR +I+SN+K +
Sbjct: 237 REVKVAREVLRDALQRAAILSNEKYR 262
>gi|212659807|gb|ACJ36981.1| DNA polymerase III subunit beta [Xylella fastidiosa]
Length = 262
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 156/266 (58%), Gaps = 10/266 (3%)
Query: 15 PLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAA 74
PL V+++VE++ IL+N+L+ N +++S TD EV++ + T + S I + A
Sbjct: 3 PLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESG-EITIPA 61
Query: 75 RKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFT-- 132
RK +I+R+LP+ ++++Y + + +++G+SKFTL TL A ++P S E T
Sbjct: 62 RKIYEIVRALPDASQLSVYQSDDKITLQAGRSKFTLATLPANDFP-----SIDKIEVTER 116
Query: 133 --LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKK 190
+++ LK ++ F++AQQD+RYYLNGLL + + V++DGHRL + +++
Sbjct: 117 IIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLRDTKLRCVATDGHRLALCETELEQA 176
Query: 191 FSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKY 250
II+PRK V LQRLLE + +EL+I+ N I++ ++ SKLIDG F DY+
Sbjct: 177 KDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEG 236
Query: 251 VISNKYEKSFLVNRNKLLRSLQRISI 276
VI ++ V R L +LQR +
Sbjct: 237 VIPIGADREVKVAREVLRDALQRAQL 262
>gi|418055305|ref|ZP_12693360.1| DNA polymerase III, beta subunit [Hyphomicrobium denitrificans
1NES1]
gi|353210887|gb|EHB76288.1| DNA polymerase III, beta subunit [Hyphomicrobium denitrificans
1NES1]
Length = 372
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 98/311 (31%), Positives = 176/311 (56%), Gaps = 10/311 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L L V S+VE++ +PILSN+++ + + + F +TD E +++ A ++
Sbjct: 6 ERGELLKALSHVTSVVERRTTIPILSNVMLKASGDTLMFKATDLEREVSESVAAKV-STP 64
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIEN--KHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
+ V A DI+R LPE ++ + + + + I SG S+F+LQTL A+++P + +
Sbjct: 65 GTLTVPAHVLHDIVRKLPEGAEIEMKRDGDKERLTITSGHSRFSLQTLSAEDFPDLAVG- 123
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGHRLT 181
+ EFT+ LK +++ F+I+ ++ RYYLNG+ L + K + AV++DGHRL
Sbjct: 124 EIGHEFTIEAGDLKRLIDKTRFAISTEETRYYLNGIFLHPAETAGAKTLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
++ + K +I+PRKTV L RLLE+ V++ +S +++ + + SKLI
Sbjct: 184 QVELPLPKGAEGMPGVIVPRKTVHELARLLEDTSAKVKVGVSQTKVRFEIGPVVLTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY VI + +K V ++ R+S I++++ + V+L + + L +TV +
Sbjct: 244 DGTFPDYGRVIPHNNDKEMKVPNASFKSAVDRVSTIASERGRAVKLNVAKDKLILTV--N 301
Query: 302 NREKASSTDLI 312
N E S+T+ I
Sbjct: 302 NPEGGSATEEI 312
>gi|192288435|ref|YP_001989040.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris TIE-1]
gi|192282184|gb|ACE98564.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris TIE-1]
Length = 372
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 175/312 (56%), Gaps = 10/312 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ +L L V +VE++N +PIL N+LV + +++ +TD ++++T T
Sbjct: 3 VTVERAQLLKSLSHVHRVVERRNTIPILGNVLVRAENAQLALKATDLDLEVTE-TLPAET 61
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPIMT 122
++ + V A F DI+R LP+ ++ + + + I++G+S+FTLQTL ++P +
Sbjct: 62 ATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSVLAIRAGRSRFTLQTLPESDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGH 178
+ F L +K +++ F+I+ ++ RYYLNG+ L S + ++ AV++DGH
Sbjct: 122 AG-EMSHAFRLPASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSPKASSLRAVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL + + +I+PRKTV +QRL+E+ E + +++S +I+ N+ + S
Sbjct: 181 RLAQLDLTLPSGADGMPGLIVPRKTVGEVQRLIEDTEAEIGIELSTGKIRFTLGNVVLTS 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY VI +K V++ ++ R+S IS+++ + V+L + K+ +
Sbjct: 241 KLIDGTFPDYGRVIPQNNDKELRVDKKDFEAAVDRVSTISSERGRAVKLALSAG--KLVL 298
Query: 299 SSSNREKASSTD 310
S +N + S+T+
Sbjct: 299 SVTNPDSGSATE 310
>gi|302381118|ref|YP_003816941.1| DNA polymerase III subunit beta [Brevundimonas subvibrioides ATCC
15264]
gi|302191746|gb|ADK99317.1| DNA polymerase III, beta subunit [Brevundimonas subvibrioides ATCC
15264]
Length = 372
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 175/308 (56%), Gaps = 18/308 (5%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQL + E++A+L L V S+VE++N +PILSN+L+ +++SF +TD +++I
Sbjct: 1 MQLTI--ERSALLKALGHVQSVVERRNTIPILSNVLLSAGRDRLSFAATDLDMEI----- 53
Query: 61 VGYGNSSIN----IIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLD 114
V ++++ I A +I+R LP+ +V + ++ + +++G+SKF L L
Sbjct: 54 VDEADATVQVEGQITAPAHTLYEIVRKLPDGAEVALTYNGDDPRLTVQAGRSKFNLPVLP 113
Query: 115 AKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNII--- 171
A ++P+M+ + + FTL + L +++ F+++ ++ RYYLNGL L + I
Sbjct: 114 AGDFPVMSTD-QSGARFTLMKDDLARLIDKTRFAVSTEETRYYLNGLYLHTVAEGGIPLL 172
Query: 172 -AVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKII 230
AV++DGHRL + + + +I+PRKT+ ++RLL++ PVE+ +S +I+
Sbjct: 173 RAVATDGHRLALAETPAPEGAAGGPGVIVPRKTIDQVRRLLDDGTGPVEISVSPQKIRFE 232
Query: 231 FSNIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIK 290
F + SK+IDG F DY VI +K ++ ++ R++ IS +K + V+L +
Sbjct: 233 FGQASLTSKVIDGAFPDYMRVIPKGNDKQADIDNAVFASAVDRVATISAEKSRSVKLAFE 292
Query: 291 PNYLKITV 298
+ + +TV
Sbjct: 293 LDRVTLTV 300
>gi|335033034|ref|ZP_08526406.1| DNA polymerase III subunit beta [Agrobacterium sp. ATCC 31749]
gi|333795710|gb|EGL67035.1| DNA polymerase III subunit beta [Agrobacterium sp. ATCC 31749]
Length = 403
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 172/309 (55%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + +TD +++IT T +
Sbjct: 37 ERSNLLKSLNHVHRVVERRNTIPILSNVLLRASGANLDMKATDLDLEITEATPAMVEQAG 96
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A +I+R LP+ +V + + M + SG+SKF+LQ L ++P +T +
Sbjct: 97 ATT-VPAHLLYEIVRKLPDGSEVLLATNPDGSSMTVASGRSKFSLQCLPEADFPDLTAGT 155
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIAVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ + N + AV++DGHRL
Sbjct: 156 -FSHTFKLKAADLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGELKLRAVATDGHRLA 214
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V+ IIIPRKTV LQ+L++N E V +++S+ +I++ ++ + SKLI
Sbjct: 215 RADVDAPSGSEGMPGIIIPRKTVGELQKLMDNPELEVTVEVSDAKIRLAIGSVVLTSKLI 274
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ R++ R+S IS+++ + V+L + L +TV +
Sbjct: 275 DGTFPDYQRVIPTGNDKEMRVDCQTFARAVDRVSTISSERGRAVKLALTDGQLTLTV--N 332
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 333 NPDSGSATE 341
>gi|159184247|ref|NP_353331.2| DNA polymerase III, beta chain [Agrobacterium fabrum str. C58]
gi|159139574|gb|AAK86116.2| DNA polymerase III, beta chain [Agrobacterium fabrum str. C58]
Length = 372
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 172/309 (55%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + +TD +++IT T +
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNVLLRASGANLDMKATDLDLEITEATPAMVEQAG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A +I+R LP+ +V + + M + SG+SKF+LQ L ++P +T +
Sbjct: 66 ATT-VPAHLLYEIVRKLPDGSEVLLATNPDGSSMTVASGRSKFSLQCLPEADFPDLTAGT 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIAVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ + N + AV++DGHRL
Sbjct: 125 -FSHTFKLKAADLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGELKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V+ IIIPRKTV LQ+L++N E V +++S+ +I++ ++ + SKLI
Sbjct: 184 RADVDAPSGSEGMPGIIIPRKTVGELQKLMDNPELEVTVEVSDAKIRLAIGSVVLTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ R++ R+S IS+++ + V+L + L +TV +
Sbjct: 244 DGTFPDYQRVIPTGNDKEMRVDCQTFARAVDRVSTISSERGRAVKLALTDGQLTLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|262374720|ref|ZP_06067992.1| DNA polymerase III, beta subunit [Acinetobacter junii SH205]
gi|262310376|gb|EEY91468.1| DNA polymerase III, beta subunit [Acinetobacter junii SH205]
Length = 382
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 175/318 (55%), Gaps = 15/318 (4%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN--S 66
K ++L+ L V+ VE+++ L ILSN+ + + ++ +D EV++ T + G
Sbjct: 7 KESLLNVLSHVVGAVERRHTLNILSNVKIQTTQQALTITGSDLEVELVASTTLADGACIE 66
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
+ V ARK ++I +SLP + + I E++ +KSG S+F L TL A++YP+++ +
Sbjct: 67 AGETTVPARKLVEICKSLPSAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYPLLSTEN 126
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
+ ++Q+ LK + F++A QD+R+YL G LL + + V++DGHRL +V
Sbjct: 127 SLGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDQNQLRTVTTDGHRLALCEV 186
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSN-----------I 234
+S I+PRK V LQRLL ++ + L I + + + +
Sbjct: 187 LASSTATSSIQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPSRDKEQGDITV 246
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+KLIDGKF DY+ VI +K L+ + +SLQR++I+SN+KL+GV L + L
Sbjct: 247 RFTTKLIDGKFPDYRRVIPRGGDKHVLIAHDVFKQSLQRVAILSNEKLRGVFLNFSQDTL 306
Query: 295 KITVSSSNREKASSTDLI 312
++ ++ +++AS DL+
Sbjct: 307 QLRANNPEQDEASE-DLV 323
>gi|158422637|ref|YP_001523929.1| DNA polymerase III subunit beta [Azorhizobium caulinodans ORS 571]
gi|158329526|dbj|BAF87011.1| DNA polymerase III beta chain [Azorhizobium caulinodans ORS 571]
Length = 372
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 175/312 (56%), Gaps = 10/312 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ +L L V +VE++N +PIL+N+L+ + +S +TD ++++ G
Sbjct: 3 VTVERAELLKSLSHVHRVVERRNTIPILANVLIRTGTNGLSLKATDLDLEVVETVPAEVG 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
V A DI+R LP+ +V + E ++ +++G+++FTLQTL ++P +
Sbjct: 63 QDGATT-VPAHVLYDIVRKLPDGSQVQLEAGGERGNLTVRAGRARFTLQTLPEADFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGH 178
+ F + + +++ F+I+ ++ RYYLNG+ L + + AV++DGH
Sbjct: 122 AGD-FSHSFKVKGAEFRRLVDKTQFAISTEETRYYLNGIYLHVADAAGTAKLRAVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL +++ + + +I+PRKTV +Q+LLE+K+ V + +S +I++ I + S
Sbjct: 181 RLAQAELDAPEGSAGLPGVIVPRKTVAEIQKLLEDKDAEVTVSLSTTKIRVAVGAIVLTS 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY VI +K LV+++ ++ R+S +S+++ + V+L I+ K+T+
Sbjct: 241 KLIDGTFPDYGRVIPAGNDKILLVDKSDFAAAVDRVSTVSSERGRAVKLSIQDG--KLTL 298
Query: 299 SSSNREKASSTD 310
S +N + S+T+
Sbjct: 299 SVTNPDSGSATE 310
>gi|241207273|ref|YP_002978369.1| DNA polymerase III subunit beta [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|424873311|ref|ZP_18296973.1| DNA polymerase III, beta subunit [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|240861163|gb|ACS58830.1| DNA polymerase III, beta subunit [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|393169012|gb|EJC69059.1| DNA polymerase III, beta subunit [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 372
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/312 (32%), Positives = 174/312 (55%), Gaps = 10/312 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
+ E++ +L L V +VE++N +PILSN+L+ + +K+ +TD +++IT T
Sbjct: 3 ITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQKLDMKATDLDLEITEATPASVE 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
V A DI+R L + +V + + M ++SG+SKF+LQ L ++P +T
Sbjct: 63 QPGATT-VPAHLLYDIVRKLSDGSEVLLATSPDGGAMTVQSGRSKFSLQCLPESDFPDLT 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIAVSSDGH 178
+ + F L LK +++ F+I+ ++ RYYLNG+ + N + AV++DGH
Sbjct: 122 AGT-FTHSFKLKAADLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGQLKLRAVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL V+ IIIPRKTV LQ+L++N E V +++S+ +I++ +I + S
Sbjct: 181 RLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEVMVTVEVSDAKIRLTIGSIVMTS 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY+ VI +K V+ +++ R+S IS+++ + V+L + L +TV
Sbjct: 241 KLIDGTFPDYQRVIPTGNDKEMRVDCTSFAQAVDRVSTISSERGRAVKLALSEGQLMLTV 300
Query: 299 SSSNREKASSTD 310
+N + S+T+
Sbjct: 301 --NNPDSGSATE 310
>gi|329847539|ref|ZP_08262567.1| DNA polymerase III, beta subunit [Asticcacaulis biprosthecum C19]
gi|328842602|gb|EGF92171.1| DNA polymerase III, beta subunit [Asticcacaulis biprosthecum C19]
Length = 373
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 173/305 (56%), Gaps = 11/305 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ + E+ A+L L V ++VE++N +PILSN+L+ ++SF +TD +++I TA
Sbjct: 1 MQFTI--ERGALLKALGHVQNVVERRNTIPILSNVLLSAERGQVSFSATDLDMEIVD-TA 57
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYI---ENKHMFIKSGKSKFTLQTLDAKE 117
+ I A +I+R LP+ V + ++ + + +G+S+F L L A +
Sbjct: 58 EATVSVPGQITAPAHTLYEIVRKLPDGADVELKFSAGDDPRLAVSAGRSRFALPVLPAGD 117
Query: 118 YPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGL---LLSFQKKNII-AV 173
+PIM+ + + F++ + LK +++ F+++ ++ RYYLNG+ LS N + AV
Sbjct: 118 FPIMSSDHE-GVSFSILRDDLKRLIDKTRFAVSTEETRYYLNGMYLHTLSEDGSNYLRAV 176
Query: 174 SSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSN 233
++DGHRL ++ + + +IIPRKT+ +RLL++ VEL IS +I+ N
Sbjct: 177 ATDGHRLALAEMPAPEGSAGGPGVIIPRKTIDQARRLLDDGTGYVELTISPAKIRFQLGN 236
Query: 234 IEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNY 293
+ SK+IDG F DY VI +K +++ L +++ R+S IS +K + V++ I+P
Sbjct: 237 ASLTSKIIDGSFPDYGRVIPKNNDKVMMIDTGILAKAVDRVSTISAEKSRSVKMAIEPGR 296
Query: 294 LKITV 298
L ++V
Sbjct: 297 LTLSV 301
>gi|262371172|ref|ZP_06064493.1| DNA polymerase subunit III [Acinetobacter johnsonii SH046]
gi|262313902|gb|EEY94948.1| DNA polymerase subunit III [Acinetobacter johnsonii SH046]
Length = 382
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/312 (32%), Positives = 169/312 (54%), Gaps = 14/312 (4%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN--S 66
K ++L+ L V+ VE+++ L ILSN+ V ++ +D EV++ T + G
Sbjct: 7 KESLLNVLSHVVGAVERRHTLNILSNVKVQVTQASLTITGSDLEVELVASTPLTEGACLQ 66
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
+ V ARK +DI +SLP + + I E++ +KSG S+F L TL A++YP++T +
Sbjct: 67 AGETTVPARKLMDICKSLPTAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYPLLTTEN 126
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
+ ++Q+ LK + F++A QD+R+YL G LL + AV++DGHRL +
Sbjct: 127 TQGTQVAVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDNNQLRAVTTDGHRLALCET 186
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFS-----------NI 234
+ I+PRK V LQRLL ++ + L I + + S +
Sbjct: 187 VASSNATQLIQAIVPRKAVGELQRLLSIEDEQLALLIGRELLNVTISIASRDKEQGDTMV 246
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+KLIDGKF DY+ VI +K+ L+ + +SLQR+SI+SN+KL+GV L + L
Sbjct: 247 RFTTKLIDGKFPDYRRVIPRGGDKNVLIAHDVFKQSLQRVSILSNEKLRGVFLNFAADTL 306
Query: 295 KITVSSSNREKA 306
++ ++ +++A
Sbjct: 307 QLRANNPEQDEA 318
>gi|300021541|ref|YP_003754152.1| DNA polymerase III subunit beta [Hyphomicrobium denitrificans ATCC
51888]
gi|299523362|gb|ADJ21831.1| DNA polymerase III, beta subunit [Hyphomicrobium denitrificans ATCC
51888]
Length = 372
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 177/312 (56%), Gaps = 12/312 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L L V S+VE++ +PILSNI++ + E + F +TD E +++ +VG S+
Sbjct: 6 ERGELLKALSHVTSVVERRTTIPILSNIMLKASGETLMFKATDLEREVSE--SVGAKVST 63
Query: 68 INII-VAARKFIDILRSLPETEKVTIY--IENKHMFIKSGKSKFTLQTLDAKEYPIMTLN 124
+ V A DI+R LP+ ++ + E + + I SG S+F+LQTL A+++P + +
Sbjct: 64 PGTLTVPAHVLHDIVRKLPDGAEIEMKRDGEKERLTITSGHSRFSLQTLSAEDFPDLAVG 123
Query: 125 SKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQK----KNIIAVSSDGHRL 180
+ EFT+ LK +++ F+I+ ++ RYYLNG+ L + K + AV++DGHRL
Sbjct: 124 -EIGHEFTIEAGDLKRLIDKTRFAISTEETRYYLNGIFLHPAETAGVKTLRAVATDGHRL 182
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
++ + K +I+PRKTV L RLLE+ V + +S +++ + + SKL
Sbjct: 183 AQVELPLPKGAEGMPGVIVPRKTVHELARLLEDSSAKVNVGVSQTKVRFEIGPVVLTSKL 242
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG F DY VI + +K V ++ R+S I++++ + V+L + + L +TV
Sbjct: 243 IDGTFPDYSRVIPHNNDKEMKVPNASFKSAVDRVSTIASERGRAVKLNVAKDKLILTV-- 300
Query: 301 SNREKASSTDLI 312
+N E S+T+ I
Sbjct: 301 NNPEGGSATEEI 312
>gi|91974484|ref|YP_567143.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris BisB5]
gi|91680940|gb|ABE37242.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris BisB5]
Length = 372
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 177/312 (56%), Gaps = 10/312 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ +L L V +VE++N +PIL N+LV + +++ +TD ++++ T
Sbjct: 3 VTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAQLALKATDLDLEVIE-TLPAET 61
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPIMT 122
++ + V A F DI+R LP+ ++ + + + I++G+S+FTLQTL ++P +
Sbjct: 62 ATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSVLAIRAGRSRFTLQTLPESDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGH 178
+ F+L+ +K +++ F+I+ ++ RYYLNG+ L S + + AV++DGH
Sbjct: 122 AG-EMSHSFSLAASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSAKAATLRAVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL + S +I+PRKTV +QRL+E+ + + +++S +I+ N+ + S
Sbjct: 181 RLAQVDLAQPAGASGMPGVIVPRKTVGEVQRLIEDNDAEIAIELSAGKIRFTIGNVVLTS 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY VI +K +V++ + ++ R+S IS+++ + V+L + K+ +
Sbjct: 241 KLIDGTFPDYGRVIPQNNDKELVVDKKEFEAAVDRVSTISSERGRAVKLALSAG--KLVL 298
Query: 299 SSSNREKASSTD 310
S +N + S+T+
Sbjct: 299 SVTNPDSGSATE 310
>gi|86355975|ref|YP_467867.1| DNA polymerase III subunit beta [Rhizobium etli CFN 42]
gi|86280077|gb|ABC89140.1| DNA polymerase III, beta chain protein [Rhizobium etli CFN 42]
Length = 372
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 173/309 (55%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + + +TD +++IT T +
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPANVEQAG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A DI+R L + +V + E M ++SG+SKF+LQ L ++P +T +
Sbjct: 66 ATT-VPAHLLYDIVRKLSDGAEVLLATSTEGGSMTVQSGRSKFSLQCLPESDFPDLTAGT 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIAVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ + N + AV++DGHRL
Sbjct: 125 -FTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGELKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V+ IIIPRKTV LQ+L++N E V +++S+ +I++ +I + SKLI
Sbjct: 184 RADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEAIVTVEVSDAKIRMTIGSIVLTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ +++ R+S IS+++ + V+L + L +TV +
Sbjct: 244 DGTFPDYQRVIPTGNDKEMRVDCTTFAQAVDRVSTISSERGRAVKLALSEGQLMLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|389720999|ref|ZP_10187754.1| DNA polymerase III subunit beta [Acinetobacter sp. HA]
gi|388609096|gb|EIM38289.1| DNA polymerase III subunit beta [Acinetobacter sp. HA]
Length = 382
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 171/312 (54%), Gaps = 14/312 (4%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN--S 66
K ++L+ L V+ VE+++ L ILSN+ + ++ ++ +D EV++ + G
Sbjct: 7 KESLLNVLSHVVGAVERRHTLNILSNLKIQVTAQALTVTGSDLEVELVASMPLNEGACLQ 66
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
+ V ARK +DI +SLP V + I E++ +KSG S+F L TL A++YP+++ +
Sbjct: 67 AGETTVPARKLVDICKSLPSAALVDLQITEDQRCILKSGNSRFVLGTLPAEDYPLLSTEN 126
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
+ T++Q+ LK + F++A QD+R+YL G LL + AV++DGHRL +
Sbjct: 127 SQGTQVTVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDANQLRAVTTDGHRLALCET 186
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIF-----------SNI 234
+ I+PRK V LQRLL +++ + L I + + + +
Sbjct: 187 AAQSTAAQPIQAIVPRKAVGELQRLLSVEDDQLSLLIGRELLNVTITVANRDKEQGDTTV 246
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+KLIDGKF DY+ VI +K ++ + +SLQR++I+SN+KL+GV L + L
Sbjct: 247 RFTTKLIDGKFPDYRRVIPRGGDKHVIIAHDVFKQSLQRVAILSNEKLRGVFLNFNADSL 306
Query: 295 KITVSSSNREKA 306
++ ++ +++A
Sbjct: 307 QLRANNPEQDEA 318
>gi|407800195|ref|ZP_11147062.1| DNA polymerase III, beta subunit [Oceaniovalibus guishaninsula
JLT2003]
gi|407057832|gb|EKE43801.1| DNA polymerase III, beta subunit [Oceaniovalibus guishaninsula
JLT2003]
Length = 372
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 178/307 (57%), Gaps = 14/307 (4%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG-- 62
++ E+ +L + S+VE++N +PIL+N+L+ + ++SF +TD ++++ +
Sbjct: 3 ISIERGTLLRAVARAQSVVERRNTIPILANVLIEADDGRVSFRATDLDIEVVDHAPAEVE 62
Query: 63 -YGNSSINIIVAARKFIDILRSLPETEKVTIYIENK--HMFIKSGKSKFTLQTLDAKEYP 119
G +++N ++ F +I+R LP+ VT+ ++ + +++G+S+F L TL +++P
Sbjct: 63 RAGATTVNAVM----FHEIVRKLPDGALVTLADDSATGSLRVRAGRSQFDLTTLPRQDFP 118
Query: 120 IMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQK----KNIIAVSS 175
+M ++ Y EF++ + L+ + + F+I+ ++ RYYLNG+ + + + + V++
Sbjct: 119 VMA-DAAYTAEFSIPAQALRRLFDKSKFAISTEETRYYLNGVYMHVAETQGARTLRCVAT 177
Query: 176 DGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIE 235
DGHRL ++ +I+PRK V L++LLE + P+++ +SN +++ I
Sbjct: 178 DGHRLARIDADLPDGAEGMPGVIVPRKAVAELRKLLEVDDTPIQVSVSNTKVRFATDEIA 237
Query: 236 IISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLK 295
+ SK+IDG F DY VI + V+ R++ R++ +S++K + V++ ++ + L
Sbjct: 238 LTSKVIDGTFPDYSRVIPQNNSRKLEVDAADFARAVDRVATVSSEKSRAVKMQMEDDRLV 297
Query: 296 ITVSSSN 302
++V++ +
Sbjct: 298 LSVTAPD 304
>gi|417858681|ref|ZP_12503738.1| DNA polymerase III subunit beta [Agrobacterium tumefaciens F2]
gi|338824685|gb|EGP58652.1| DNA polymerase III subunit beta [Agrobacterium tumefaciens F2]
Length = 384
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 172/309 (55%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + +TD +++IT T +
Sbjct: 18 ERSNLLKSLNHVHRVVERRNTIPILSNVLLRASGANLDMKATDLDLEITEATPAMVEQAG 77
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A +I+R LP+ +V + + M + SG+SKF+LQ L ++P +T +
Sbjct: 78 ATT-VPAHLLYEIVRKLPDGSEVLLATNPDGSTMTVASGRSKFSLQCLPETDFPDLTAGT 136
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIAVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ + N + AV++DGHRL
Sbjct: 137 -FSHTFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGELKLRAVATDGHRLA 195
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V+ IIIPRKTV LQ+L++N E V +++S+ +I++ ++ + SKLI
Sbjct: 196 RADVDAPSGSEGMPGIIIPRKTVGELQKLMDNPELEVTVEVSDAKIRLTIGSVVLTSKLI 255
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ R++ R+S IS+++ + V+L + L +TV +
Sbjct: 256 DGTFPDYQRVIPTGNDKEMRVDCQTFARAVDRVSTISSERGRAVKLALTDGQLTLTV--N 313
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 314 NPDSGSATE 322
>gi|116250102|ref|YP_765940.1| DNA polymerase III subunit beta [Rhizobium leguminosarum bv. viciae
3841]
gi|115254750|emb|CAK05824.1| putative DNA polymerase III, beta chain [Rhizobium leguminosarum
bv. viciae 3841]
Length = 372
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 173/309 (55%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + +K+ +TD +++IT T
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQKLDMKATDLDLEITEATPASVEQPG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A DI+R L + +V + + M ++SG+SKF+LQ L ++P +T +
Sbjct: 66 ATT-VPAHLLYDIVRKLSDGSEVLLATSSDGGSMTVQSGRSKFSLQCLPESDFPDLTAGT 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIAVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ + N + AV++DGHRL
Sbjct: 125 -FTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGQLKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V+ IIIPRKTV LQ+L++N E V +++S+ +I++ +I + SKLI
Sbjct: 184 RADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEVMVTVEVSDAKIRLTIGSIVMTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ +++ R+S IS+++ + V+L + L +TV +
Sbjct: 244 DGTFPDYQRVIPTGNDKEMRVDCTSFAQAVDRVSTISSERGRAVKLALSEGQLMLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|359788076|ref|ZP_09291059.1| DNA polymerase III subunit beta [Mesorhizobium alhagi CCNWXJ12-2]
gi|359256129|gb|EHK59005.1| DNA polymerase III subunit beta [Mesorhizobium alhagi CCNWXJ12-2]
Length = 372
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/311 (31%), Positives = 177/311 (56%), Gaps = 14/311 (4%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA--VGYGN 65
E++ +L L V +VE++N +PILSN+L+ + + +TD +++IT TA V G
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNVLLAAEGQSLELKATDLDLEITEATAAKVERGG 65
Query: 66 SSINIIVAARKFIDILRSLPETEKVTIYIE--NKHMFIKSGKSKFTLQTLDAKEYPIMTL 123
++ V A DI+R LPE +V + + M + SG+S F LQ L ++P ++
Sbjct: 66 ATT---VPAHLLYDIVRKLPEGAEVMLKTDEDGNAMTVASGRSSFRLQCLPQSDFPELSA 122
Query: 124 NSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGL----LLSFQKKNIIAVSSDGHR 179
S + F L LK +++ F+I+ ++ RYYLNG+ + + K + +V++DGHR
Sbjct: 123 GS-FSHIFRLESAALKGLIDKTQFAISTEETRYYLNGIYFHAIEAGGKLKLRSVATDGHR 181
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L +++ IIIPRKTV LQ+L+++ + V ++S+ +I+ ++ + SK
Sbjct: 182 LARAEMDAPAGSEGMPGIIIPRKTVSELQKLVDDPDVAVTTELSDTKIRFTIGSVILTSK 241
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG F DY+ VI +K +++R R++ R+S IS+++ + V+L I ++T++
Sbjct: 242 LIDGTFPDYQRVIPTGNDKKLIIDRETFARAVDRVSTISSERGRAVKLSISDG--QVTLA 299
Query: 300 SSNREKASSTD 310
+N + S+T+
Sbjct: 300 VNNPDSGSATE 310
>gi|89885797|ref|YP_515995.1| DNA polymerase III, beta subunit [Rhodoferax ferrireducens T118]
gi|89347795|gb|ABD71997.1| DNA polymerase III, beta subunit [Rhodoferax ferrireducens T118]
Length = 378
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 175/316 (55%), Gaps = 7/316 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILV--CKNSEKISFLSTDTEVQITTY 58
MQ + + + + LQ V IV + + L IL N+L+ C + +I+ + TD EV++
Sbjct: 1 MQFKLTSTQAQLYGLLQAVNGIVPRSSSLVILGNVLLNTCSDG-RITAVGTDLEVEVNAT 59
Query: 59 TAVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENK-HMFIKSGKSKFTLQTLDAKE 117
VG +++ V +RK +DIL+++ E VT+ EN H+ + F L L A +
Sbjct: 60 QHVGSFTGALSTTVESRKLMDILQTMANDEPVTLASENPDHLVLTGANGTFKLSCLPADD 119
Query: 118 YPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDG 177
+P M + Y F + Q LK ++ F++A DIRYYL G+ + + +SDG
Sbjct: 120 FPRMEIAPNYQETFRIKQGVLKGLIEKTGFAMALHDIRYYLIGMQFVVEGGRLTVCTSDG 179
Query: 178 HRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
R+ +V ++ + ++I+PRK+V L+RL + ++ VE+++S NQ +I F +E +
Sbjct: 180 FRVATDEVAVESSIPTRREVILPRKSVLELKRLTRDTDDQVEVQLSANQARIRFGALEFV 239
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLK-- 295
+KL++GKF D + V+ + ++R+ LL ++QR ++I + K+ GVR ++ + +
Sbjct: 240 TKLVEGKFPDIRAVVPQHNDNVVTLSRSALLLAIQRAAVIMSQKVNGVRFILDHDLISGH 299
Query: 296 ITVSSSNREKASSTDL 311
+ V SSN EK + DL
Sbjct: 300 LKVESSN-EKNETVDL 314
>gi|150398727|ref|YP_001329194.1| DNA polymerase III subunit beta [Sinorhizobium medicae WSM419]
gi|150030242|gb|ABR62359.1| DNA polymerase III, beta subunit [Sinorhizobium medicae WSM419]
Length = 372
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 172/309 (55%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + +TD +++IT T +
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNVLLRSDGASLEMKATDLDLEITEATQAQVEQAG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A DI+R LP+ +V + E M + SG+SKF+LQ L ++P +T +
Sbjct: 66 ATT-VPAHLLYDIVRKLPDGSEVLLATNAEGTAMTVASGRSKFSLQCLPQSDFPDLTAGT 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIAVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ + + N + AV++DGHRL
Sbjct: 125 -FSHSFRLKATDLKMLIDRTQFAISTEETRYYLNGIFVHTVESNGELKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V IIIPRKTV LQ+LL+N + V +++S+ +I++ +I + SKLI
Sbjct: 184 RADVEAPSGSEGMPGIIIPRKTVSELQKLLDNPDVVVTVEVSDAKIRLTIGSIVMTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ +++ R+S IS+++ + V+L + + +TV +
Sbjct: 244 DGTFPDYQRVIPASNDKELRVDCQSFSQAVDRVSTISSERGRAVKLALTDGQMTLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|384261237|ref|YP_005416423.1| DNA polymerase III subunit beta [Rhodospirillum photometricum DSM
122]
gi|378402337|emb|CCG07453.1| DNA polymerase III, beta subunit [Rhodospirillum photometricum DSM
122]
Length = 381
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 172/311 (55%), Gaps = 10/311 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ A L L V S+VE++N +PILSN+ + ++E + +TD +++IT
Sbjct: 15 ERTAFLKSLGHVQSVVERRNTIPILSNLRMTASAEGLGLNATDMDLEITESIPATVSQPG 74
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIE--NKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
A DI+R LP+ +V + E + + +++G+S+F L L ++P+M+
Sbjct: 75 ATT-APAHTLYDIVRKLPDGSQVELSHEGGDGPLVLRAGRSRFQLACLPVDDFPVMS-PG 132
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGHRLT 181
+ F L L+ +++ F+I+ ++ RYYLNG+ L + + + AV++DGHRL
Sbjct: 133 DFSHSFVLPAADLRALIDRTRFAISTEETRYYLNGIFLHATEAAGQPVLRAVATDGHRLA 192
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
++ + + + +I+PRKTV L++L+E V + +S ++I+ F ++ +ISKLI
Sbjct: 193 CVEIPLPEGAAGMPAVIVPRKTVTELRKLVEETGMVVNVSLSEHKIRFAFDDVCLISKLI 252
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DGKF DY+ VI +K V R ++ R++ IS +K + +++ + L T+S+S
Sbjct: 253 DGKFPDYERVIPTDNDKILEVARQPFAQATDRVAAISTEKSRAIKVAVAAGTL--TLSAS 310
Query: 302 NREKASSTDLI 312
+ E S+ + I
Sbjct: 311 SPEAGSAVEEI 321
>gi|405376838|ref|ZP_11030790.1| DNA polymerase III, beta subunit [Rhizobium sp. CF142]
gi|397326738|gb|EJJ31051.1| DNA polymerase III, beta subunit [Rhizobium sp. CF142]
Length = 372
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 173/309 (55%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + + +TD +++IT T +
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQSLDMKATDLDLEITEATPANVEQAG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A DI+R LP+ +V + + M ++SG+SKF+LQ L ++P +T +
Sbjct: 66 ATT-VPAHLLYDIVRKLPDGAEVLLASSQDGGSMTVQSGRSKFSLQCLPESDFPDLTAGT 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ S + AV++DGHRL
Sbjct: 125 -FTHSFKLKASDLKMLIDRTQFAISTEETRYYLNGIFFHTIESGGDLKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V+ IIIPRKTV LQ+L++ + V +++S+ +I++ S+I + SKLI
Sbjct: 184 RADVDAPSGSEGMPGIIIPRKTVGELQKLVDTPDAIVTVEVSDAKIRVTLSSIVMTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ +++ R+S IS+++ + V+L + L +TV +
Sbjct: 244 DGTFPDYQRVIPTNNDKEMRVDCTSFAQAVDRVSTISSERGRAVKLALSDGQLLLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|406040998|ref|ZP_11048353.1| DNA polymerase III subunit beta [Acinetobacter ursingii DSM 16037 =
CIP 107286]
Length = 382
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 169/312 (54%), Gaps = 14/312 (4%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN--S 66
K ++++ L V+ VE+++ L ILSN+ + + ++ +D EV++ T + G
Sbjct: 7 KESLVNVLSHVVGAVERRHTLNILSNVKIQATDQALTITGSDLEVELVASTTLAEGACLQ 66
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
S ARK +DI +SLP + + I E++ +KSG S+F L TL A++YP++ +
Sbjct: 67 SGETTAPARKLMDICKSLPTAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYPLLNTEN 126
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
+ ++Q+ LK + F++A QD+R+YL G LL + + AV++DGHRL +V
Sbjct: 127 SQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLRAVTTDGHRLALCEV 186
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFS-----------NI 234
+ I+PRK V LQRLL ++ + L I + + + +
Sbjct: 187 LASSNATQLVQAIVPRKAVGELQRLLSIEDEQLRLLIGRELLNVTITTPSRDKEQGDITV 246
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+KLIDGKF DY+ VI +K + + +SLQR++I+SN+KL+GV L P+ L
Sbjct: 247 RFTTKLIDGKFPDYRRVIPRGGDKLAQIAHDVFKQSLQRVAILSNEKLRGVFLNFNPDVL 306
Query: 295 KITVSSSNREKA 306
++ ++ +++A
Sbjct: 307 QLRANNPEQDEA 318
>gi|222147282|ref|YP_002548239.1| DNA polymerase III subunit beta [Agrobacterium vitis S4]
gi|221734272|gb|ACM35235.1| DNA polymerase III beta subunit [Agrobacterium vitis S4]
Length = 412
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 172/309 (55%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + +S +TD ++++T T +
Sbjct: 46 ERSNLLKSLNHVHRVVERRNTIPILSNVLLRAEGQSLSMKATDLDLEVTEATPANIEQAG 105
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A +I+R L + +V + + M + SG+SKF+LQ L +++P +T S
Sbjct: 106 ATT-VPAHLLYEIVRKLSDGAEVLLSTNPDGASMTVASGRSKFSLQCLPEQDFPDLTTGS 164
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ L + K + AV++DGHRL
Sbjct: 165 -FSHSFKLKASDLKMLIDRTQFAISTEETRYYLNGIYLHTIEADGKLKLRAVATDGHRLA 223
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V IIIPRKTV LQ+L++N + V L++S+ +I+ I + SKLI
Sbjct: 224 RADVEAPSGSEGMPGIIIPRKTVGELQKLVDNPDLIVALEVSDAKIRFNIGEIVMTSKLI 283
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ R++ R+S IS+++ + V+L I +L +TV +
Sbjct: 284 DGTFPDYQRVIPQANDKEMRVDCQTFARAVDRVSTISSERGRAVKLAIGDGHLMLTV--N 341
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 342 NPDSGSATE 350
>gi|315497053|ref|YP_004085857.1| DNA polymerase III subunit beta [Asticcacaulis excentricus CB 48]
gi|315415065|gb|ADU11706.1| DNA polymerase III, beta subunit [Asticcacaulis excentricus CB 48]
Length = 373
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/306 (31%), Positives = 173/306 (56%), Gaps = 13/306 (4%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQL++ E+ A+L L V ++VE++N +PILSN+L+ ++SF +TD +++I +A
Sbjct: 1 MQLII--ERGALLKALGHVQNVVERRNTIPILSNVLLSAEGSQVSFSATDLDMEIVD-SA 57
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTI---YIENKHMFIKSGKSKFTLQTLDAKE 117
I A +I+R LP+ V + ++ + +++G+S+F L L A +
Sbjct: 58 EAIVAVPGQITAPAHTLYEIVRKLPDGADVELRYQAGDDPRLTVQAGRSRFALPVLPAGD 117
Query: 118 YPIMTLNSKYDFE-FTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIA 172
+P+M+ +D + L ++ LK +++ F+++ ++ RYYLNGL L ++ + A
Sbjct: 118 FPVMS--GDHDGTTYALLKEDLKRLIDKTRFAVSTEETRYYLNGLFLHTLTEDGSGYLRA 175
Query: 173 VSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFS 232
V++DGHRL ++ + +IIPRKT+ +RLL++ VEL +S +I+ F
Sbjct: 176 VATDGHRLALAEMPAPDGSMGSAGVIIPRKTIDQARRLLDDGTGYVELTVSPAKIRFNFG 235
Query: 233 NIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPN 292
+ SK+IDG F DY VI +K ++ L R++ R+S IS +K + V++ I+P
Sbjct: 236 TAALTSKIIDGSFPDYGRVIPKNNDKLMRIDTGILSRAVDRVSTISAEKSRSVKMAIEPG 295
Query: 293 YLKITV 298
L +TV
Sbjct: 296 RLTLTV 301
>gi|254417831|ref|ZP_05031555.1| DNA polymerase III, beta subunit [Brevundimonas sp. BAL3]
gi|196184008|gb|EDX78984.1| DNA polymerase III, beta subunit [Brevundimonas sp. BAL3]
Length = 372
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 175/308 (56%), Gaps = 18/308 (5%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQL + E++A+L L V S+VE++N +PILSN+L+ ++++F +TD ++++
Sbjct: 1 MQLTI--ERSALLKALGHVQSVVERRNTIPILSNVLLSAGRDRLAFAATDLDMEM----- 53
Query: 61 VGYGNSSIN----IIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLD 114
V +++N I A +I+R LPE +V++ ++ + + +G+S+F L L
Sbjct: 54 VDEAEATVNVEGQITAPAHTLYEIVRKLPEGAEVSLLYSGDDPRLVVSAGRSRFNLPVLP 113
Query: 115 AKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIA-- 172
A ++PIM+ +S + + ++ L +++ F+++ ++ RYYLNGL L + +A
Sbjct: 114 AGDFPIMSTDSA-GASYVMPKEDLARLIDKTRFAVSTEETRYYLNGLYLHTVAEAGVALL 172
Query: 173 --VSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKII 230
V++DGHRL + + + +I+PRKTV ++RLL++ PVE+ +S +I+
Sbjct: 173 RAVATDGHRLALAETPAPEGAAGGPGVIVPRKTVDQVRRLLDDAAGPVEITVSAQKIRFQ 232
Query: 231 FSNIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIK 290
+ SK+IDG F DY VI +K ++ +++ R++ IS +K + V+L
Sbjct: 233 IGEASLTSKVIDGAFPDYLRVIPKGNDKQADIDNALFAKAVDRVATISAEKSRSVKLAFD 292
Query: 291 PNYLKITV 298
+ +K+TV
Sbjct: 293 NDRVKLTV 300
>gi|417101201|ref|ZP_11960403.1| DNA polymerase III subunit beta [Rhizobium etli CNPAF512]
gi|327192029|gb|EGE59010.1| DNA polymerase III subunit beta [Rhizobium etli CNPAF512]
Length = 372
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 173/309 (55%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + + +TD +++IT T +
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPASVEQAG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A DI+R L + +V + + M ++SG+SKF+LQ L ++P +T +
Sbjct: 66 ATT-VPAHLLYDIVRKLSDGSEVLLATSTDGGSMTVQSGRSKFSLQCLPESDFPDLTAGT 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIAVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ + N + AV++DGHRL
Sbjct: 125 -FTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGELKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V+ IIIPRKTV LQ+L++N E V +++S+ +I++ +I + SKLI
Sbjct: 184 RADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEAIVTVEVSDAKIRMTIGSIVLTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ +++ R+S IS+++ + V+L + L +TV +
Sbjct: 244 DGTFPDYQRVIPTGNDKEMRVDCTTFAQAVDRVSTISSERGRAVKLALSEGQLMLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|254483315|ref|ZP_05096546.1| DNA polymerase III, beta subunit [marine gamma proteobacterium
HTCC2148]
gi|214036410|gb|EEB77086.1| DNA polymerase III, beta subunit [marine gamma proteobacterium
HTCC2148]
Length = 326
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 155/265 (58%), Gaps = 5/265 (1%)
Query: 44 ISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKS 103
+S TD EV++ + S + + ARK +DI +SLPE +++ E+ + +KS
Sbjct: 1 LSLTGTDLEVELVGRVKLASAGDSGELTLPARKLVDICKSLPEGSEISFAAEDSKVTVKS 60
Query: 104 GKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL 163
G+S+FTL TL A+E+P + +S +FT+ Q LK +++ F++AQQD+RYYLNG+L
Sbjct: 61 GRSRFTLSTLPAREFPNVE-DSMGTHQFTIKQGQLKRLIDRTGFAMAQQDVRYYLNGMLW 119
Query: 164 SFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSD--IIIPRKTVFTLQRLLENKENPVELK 221
+ K + V++DGHRL + +K + D +I+PRK V L RLL ++ + +
Sbjct: 120 ELKDKQLKVVATDGHRLAL--CTLPEKIEAGDDAQVILPRKGVLELARLLLAEDEDIAIV 177
Query: 222 ISNNQIKIIFSNIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDK 281
I +N I+ SKL+DGKF DY+ V+ K L +R +L ++ R +I+SN+K
Sbjct: 178 IGSNHIRATTEEFTFTSKLVDGKFPDYQRVLPRSPNKIVLGSRLELRQAFTRTAILSNEK 237
Query: 282 LKGVRLVIKPNYLKITVSSSNREKA 306
+GVRL + N L I ++ +E+A
Sbjct: 238 YRGVRLKLTDNSLDIVANNPEQEEA 262
>gi|325291735|ref|YP_004277599.1| DNA polymerase III subunit beta [Agrobacterium sp. H13-3]
gi|325059588|gb|ADY63279.1| DNA polymerase III beta subunit [Agrobacterium sp. H13-3]
Length = 378
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 172/309 (55%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + +TD +++IT T +
Sbjct: 12 ERSNLLKSLNHVHRVVERRNTIPILSNVLLRASGANLDMKATDLDLEITEATPAMVEQAG 71
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A +I+R LP+ +V + + M + SG+SKF+LQ L ++P +T +
Sbjct: 72 ATT-VPAHLLYEIVRKLPDGSEVLLATNPDGSTMTVASGRSKFSLQCLPETDFPDLTAGT 130
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIAVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ + N + AV++DGHRL
Sbjct: 131 -FSHTFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGDLKLRAVATDGHRLA 189
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V+ IIIPRKTV LQ+L++N E V +++S+ +I++ ++ + SKLI
Sbjct: 190 RADVDAPSGSEGMPGIIIPRKTVGELQKLMDNPELDVTVEVSDAKIRLTIGSVVLTSKLI 249
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ R++ R+S IS+++ + V+L + L +TV +
Sbjct: 250 DGTFPDYQRVIPTGNDKEMRVDCQTFARAVDRVSTISSERGRAVKLALTNGQLTLTV--N 307
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 308 NPDSGSATE 316
>gi|418407829|ref|ZP_12981146.1| DNA polymerase III subunit beta [Agrobacterium tumefaciens 5A]
gi|358005815|gb|EHJ98140.1| DNA polymerase III subunit beta [Agrobacterium tumefaciens 5A]
Length = 372
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 172/309 (55%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + +TD +++IT T +
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNVLLRASGANLDMKATDLDLEITEATPAMVEQAG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A +I+R LP+ +V + + M + SG+SKF+LQ L ++P +T +
Sbjct: 66 ATT-VPAHLLYEIVRKLPDGSEVLLATNPDGSTMTVASGRSKFSLQCLPETDFPDLTAGT 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIAVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ + N + AV++DGHRL
Sbjct: 125 -FSHTFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGDLKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V+ IIIPRKTV LQ+L++N E V +++S+ +I++ ++ + SKLI
Sbjct: 184 RADVDAPSGSEGMPGIIIPRKTVGELQKLMDNPELDVTVEVSDAKIRLTIGSVVLTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ R++ R+S IS+++ + V+L + L +TV +
Sbjct: 244 DGTFPDYQRVIPTGNDKEMRVDCQTFARAVDRVSTISSERGRAVKLALTNGQLTLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|15964088|ref|NP_384441.1| DNA polymerase III subunit beta [Sinorhizobium meliloti 1021]
gi|15073264|emb|CAC41772.1| Probable DNA polymerase III, beta chain [Sinorhizobium meliloti
1021]
Length = 372
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 172/309 (55%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + +TD +++IT T +
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNVLLRSDGASLEMKATDLDLEITEATPAQVEQAG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A DI+R LP+ +V + E M + SG+SKF+LQ L ++P +T +
Sbjct: 66 ATT-VPAHLLYDIVRKLPDGSEVRLATNAEGTAMTVASGRSKFSLQCLPQSDFPDLTAGT 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIAVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ + + N + AV++DGHRL
Sbjct: 125 -FSHSFRLKAPDLKMLIDRTQFAISTEETRYYLNGIFVHTVESNGDLKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V IIIPRKTV LQ+LL++ + V +++S+ +I++ +I + SKLI
Sbjct: 184 RADVEAPSGSEGMPGIIIPRKTVSELQKLLDSPDVVVTVEVSDAKIRLTIGSIVMTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ +++ R+S IS+++ + V+L + + +TV +
Sbjct: 244 DGTFPDYQRVIPASNDKELRVDCQSFSQAVDRVSTISSERGRAVKLALADGQMTLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|384538214|ref|YP_005722299.1| DNA polymerase III subunit beta [Sinorhizobium meliloti SM11]
gi|336035106|gb|AEH81038.1| DNA polymerase III beta subunit [Sinorhizobium meliloti SM11]
Length = 372
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 172/309 (55%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + +TD +++IT T +
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNVLLRSDGASLEMKATDLDLEITEATPAQVEQAG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIY--IENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A DI+R LP+ +V + E M + SG+SKF+LQ L ++P +T +
Sbjct: 66 ATT-VPAHLLYDIVRKLPDGSEVRLATNAEGTAMTVASGRSKFSLQCLPQSDFPDLTAGT 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIAVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ + + N + AV++DGHRL
Sbjct: 125 -FSHSFRLKAPDLKVLIDRTQFAISTEETRYYLNGIFVHTVESNGDLKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V IIIPRKTV LQ+LL++ + V +++S+ +I++ +I + SKLI
Sbjct: 184 RADVEAPSGSEGMPGIIIPRKTVSELQKLLDSPDVVVTVEVSDAKIRLTIGSIVMTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ +++ R+S IS+++ + V+L + + +TV +
Sbjct: 244 DGTFPDYQRVIPASNDKELRVDCQSFSQAVDRVSTISSERGRAVKLALADGQMTLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|334318363|ref|YP_004550982.1| DNA polymerase III subunit beta [Sinorhizobium meliloti AK83]
gi|384531489|ref|YP_005715577.1| DNA polymerase III subunit beta [Sinorhizobium meliloti BL225C]
gi|407722675|ref|YP_006842337.1| DNA polymerase III subunit beta [Sinorhizobium meliloti Rm41]
gi|418401510|ref|ZP_12975037.1| DNA polymerase III subunit beta [Sinorhizobium meliloti CCNWSX0020]
gi|433612120|ref|YP_007188918.1| DNA polymerase III, beta subunit [Sinorhizobium meliloti GR4]
gi|333813665|gb|AEG06334.1| DNA polymerase III, beta subunit [Sinorhizobium meliloti BL225C]
gi|334097357|gb|AEG55368.1| DNA polymerase III, beta subunit [Sinorhizobium meliloti AK83]
gi|359504469|gb|EHK77004.1| DNA polymerase III subunit beta [Sinorhizobium meliloti CCNWSX0020]
gi|407320907|emb|CCM69511.1| DNA polymerase III subunit beta [Sinorhizobium meliloti Rm41]
gi|429550310|gb|AGA05319.1| DNA polymerase III, beta subunit [Sinorhizobium meliloti GR4]
Length = 372
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 172/309 (55%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + +TD +++IT T +
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNVLLRSDGASLEMKATDLDLEITEATPAQVEQAG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A DI+R LP+ +V + E M + SG+SKF+LQ L ++P +T +
Sbjct: 66 ATT-VPAHLLYDIVRKLPDGSEVRLATNAEGTAMTVASGRSKFSLQCLPQSDFPDLTAGT 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIAVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ + + N + AV++DGHRL
Sbjct: 125 -FSHSFRLKAPDLKMLIDRTQFAISTEETRYYLNGIFVHTVESNGDLKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V IIIPRKTV LQ+LL++ + V +++S+ +I++ +I + SKLI
Sbjct: 184 RADVEAPSGSEGMPGIIIPRKTVSELQKLLDSPDVVVTVEVSDAKIRLTIGSIVMTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ +++ R+S IS+++ + V+L + + +TV +
Sbjct: 244 DGTFPDYQRVIPASNDKELRVDCQSFSQAVDRVSTISSERGRAVKLALADGQMTLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|338736865|ref|YP_004673827.1| DNA polymerase III subunit beta [Hyphomicrobium sp. MC1]
gi|337757428|emb|CCB63248.1| DNA polymerase III, beta-subunit [Hyphomicrobium sp. MC1]
Length = 372
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 177/312 (56%), Gaps = 12/312 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L L V S+VE++ +PILSNI++ + + F +TD E +++ +VG S+
Sbjct: 6 ERGELLKALSHVTSVVERRTTIPILSNIMLKAAGDALMFKATDLEREVSE--SVGAKVSA 63
Query: 68 INII-VAARKFIDILRSLPETEKVTIYIEN--KHMFIKSGKSKFTLQTLDAKEYPIMTLN 124
+ V A DI+R LP+ ++ I + + + I SG S+F+LQTL A ++P + +
Sbjct: 64 PGTLTVPAHVLHDIVRKLPDGAEIEIKRDGDKERLTITSGHSRFSLQTLSADDFPDLAVG 123
Query: 125 SKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQK----KNIIAVSSDGHRL 180
+ EFT+ LK +++ F+I+ ++ RYYLNG+ L + K + AV++DGHRL
Sbjct: 124 -EIGHEFTMEAGDLKRLIDKTKFAISTEETRYYLNGIYLHPAETDGTKTLRAVATDGHRL 182
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
++ + K +IIPRKTV L RLLE+ V++ +S +++ ++ + SKL
Sbjct: 183 AQVELPLPKGAEGMPGVIIPRKTVHELTRLLEDSSAKVKVGVSQTKVRFEIGSVVLTSKL 242
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG F DY VI + +K V ++ R+S I++++ + V+L + + L +TV
Sbjct: 243 IDGTFPDYGRVIPHNNDKEMKVPNASFKSAVDRVSTIASERGRAVKLNVGKDKLILTV-- 300
Query: 301 SNREKASSTDLI 312
+N E S+T+ I
Sbjct: 301 NNPEGGSATEEI 312
>gi|378821617|ref|ZP_09844497.1| DNA polymerase III, beta subunit [Sutterella parvirubra YIT 11816]
gi|378599562|gb|EHY32570.1| DNA polymerase III, beta subunit [Sutterella parvirubra YIT 11816]
Length = 373
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 98/313 (31%), Positives = 181/313 (57%), Gaps = 9/313 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQL+ + I P+++V IVE+ + +PI++NI++ F +TD + Q+ T
Sbjct: 1 MQLL-RSNCETIQKPVKIVSGIVERNSTVPIVNNIMIDVKGTNAVFTTTDLDTQVVTSAP 59
Query: 61 VGYGNSSINII-VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP 119
VG+ + S V+A+K DIL ++ + V + +E+ + + +F LQTL A ++P
Sbjct: 60 VGFSDESEGCFTVSAQKLGDILSTIKGSAPVELSVEDGVAMLATTNGQFQLQTLPADDFP 119
Query: 120 IMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+ E +S K L+ +L + F++A +DIRY+LNG+L+ + V++D HR
Sbjct: 120 SFDA-VDWTREIKISAKKLRRVLALTSFAMANKDIRYFLNGVLMVTSGSTVRCVATDTHR 178
Query: 180 LTYYQVNIDKK--FSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
L++ + +++ F D IIPRKTV L R+L ++ V+++ + Q++ F+++
Sbjct: 179 LSFCECELEEGQFFEEPHDAIIPRKTVRELLRILPEDDSEVQIRFGDMQVEFSFTDVTYR 238
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLV---NRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
SKL+DGKF DY+ V+ +E + V NR +L+ +L+R I++N+K GVR ++ L
Sbjct: 239 SKLVDGKFPDYERVMPT-FESNPCVIRINREELISALRRAQIMTNEKFNGVRWLLSRGNL 297
Query: 295 KITVSSSNREKAS 307
+I +++ +E+A+
Sbjct: 298 QIQGTNNEQEEAT 310
>gi|153830817|ref|ZP_01983484.1| DNA polymerase III, beta subunit, partial [Vibrio cholerae 623-39]
gi|148873701|gb|EDL71836.1| DNA polymerase III, beta subunit [Vibrio cholerae 623-39]
Length = 250
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 147/247 (59%), Gaps = 2/247 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ ++S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLEGEFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARKF+DI R LP++ +T+ +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GCITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPASDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ + +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVAQAQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +LL+ E PV L+I ++ ++ ++ SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTSKLVDGRFPD 243
Query: 248 YKYVISN 254
Y+ V N
Sbjct: 244 YRRVCRN 250
>gi|218509914|ref|ZP_03507792.1| DNA polymerase III subunit beta [Rhizobium etli Brasil 5]
Length = 372
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 174/309 (56%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + + +TD +++IT T +
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPASVEQAG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A DI+R L + +V + + M ++SG+SKF+LQ L ++P +T +
Sbjct: 66 ATT-VPAHLLYDIVRKLSDGSEVLLATSTDGGSMTVQSGRSKFSLQCLPESDFPDLTAGT 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL-SFQKKN---IIAVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ + + K + AV++DGHRL
Sbjct: 125 -FTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESKGELKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V+ IIIPRKTV LQ+L++N E V +++S+ +I++ +I + SKLI
Sbjct: 184 RADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEAIVTVEVSDAKIRMTIGSIVLTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ +++ R+S IS+++ + V+L + L +TV +
Sbjct: 244 DGTFPDYQRVIPTGNDKEMRVDCTTFAQAVDRVSTISSERGRAVKLALSEGQLMLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|190889986|ref|YP_001976528.1| DNA polymerase III subunit beta [Rhizobium etli CIAT 652]
gi|190695265|gb|ACE89350.1| DNA polymerase III, beta chain protein [Rhizobium etli CIAT 652]
Length = 372
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 174/309 (56%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + + +TD +++IT T +
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPASVEQAG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A DI+R L + +V + + M ++SG+SKF+LQ L ++P +T +
Sbjct: 66 ATT-VPAHLLYDIVRKLSDGSEVLLATSTDGGSMTVQSGRSKFSLQCLPESDFPDLTAGT 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL-SFQKKN---IIAVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ + + K + AV++DGHRL
Sbjct: 125 -FTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESKGELKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V+ IIIPRKTV LQ+L++N E V +++S+ +I++ +I + SKLI
Sbjct: 184 RADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEAIVTVEVSDAKIRMTIGSIVLTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ +++ R+S IS+++ + V+L + L +TV +
Sbjct: 244 DGTFPDYQRVIPTGNDKEMRVDCTSFAQAVDRVSTISSERGRAVKLALSEGQLMLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|398355971|ref|YP_006401435.1| DNA polymerase III subunit beta [Sinorhizobium fredii USDA 257]
gi|390131297|gb|AFL54678.1| DNA polymerase III subunit beta [Sinorhizobium fredii USDA 257]
Length = 372
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 173/309 (55%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + +TD +++IT T +
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNVLLRSDGASLEMKATDLDLEITEATPAQVEQAG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIY--IENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A DI+R LP+ +V + E M + SG+SKF+LQ L ++P +T S
Sbjct: 66 ATT-VPAHLLYDIVRKLPDGSEVRLATNAEGTAMTVASGRSKFSLQCLPQSDFPDLTAGS 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL-SFQKKNII---AVSSDGHRLT 181
+ F + LK +++ F+I+ ++ RYYLNG+ + + + K + AV++DGHRL
Sbjct: 125 -FSHSFRVKAPDLKMLIDRTQFAISTEETRYYLNGIFVHTVEDKGQLKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
+ II+PRKTV LQ+LL+N + V +++S+ +I++ +I + SKLI
Sbjct: 184 RADIEAPSGSEGMPGIIVPRKTVSELQKLLDNPDVVVTVEVSDAKIRLTIGSIVMTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ +++ R+S IS+++ + V+L + + +TV +
Sbjct: 244 DGTFPDYQRVIPAGNDKELRVDCQSFAQAVDRVSTISSERGRAVKLALNEGQMTLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|421464216|ref|ZP_15912906.1| DNA polymerase III, beta subunit [Acinetobacter radioresistens
WC-A-157]
gi|421856539|ref|ZP_16288903.1| DNA polymerase III subunit beta [Acinetobacter radioresistens DSM
6976 = NBRC 102413]
gi|400204969|gb|EJO35950.1| DNA polymerase III, beta subunit [Acinetobacter radioresistens
WC-A-157]
gi|403187979|dbj|GAB75104.1| DNA polymerase III subunit beta [Acinetobacter radioresistens DSM
6976 = NBRC 102413]
Length = 382
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 169/312 (54%), Gaps = 14/312 (4%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN--S 66
K ++L+ L V+ VE+++ L ILSN+ + + + ++ +D EV++ T + G
Sbjct: 7 KESLLNVLSHVVGAVERRHTLNILSNVKIQASPQALTITGSDLEVELVASTGLSEGACLQ 66
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V ARK +DI +SLP + + I E++ +KSG S+F L TL A++YP++ ++
Sbjct: 67 PGETTVPARKLMDICKSLPSAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYPLLNHDN 126
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
+ ++Q+ LK + F++A QD+R+YL G LL + + AV++DGHRL +
Sbjct: 127 SQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDEAQLRAVTTDGHRLALCET 186
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFS-----------NI 234
S I+PRK V LQRLL ++ + L I + + +
Sbjct: 187 LASSTASQSVQAIVPRKAVAELQRLLSIEDEQLTLLIGRELLNVTIQTPSRDKEQGEITV 246
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+KLIDGKF DY+ VI +K+ + + +SLQR++I+SN+KL+GV L + L
Sbjct: 247 RFTTKLIDGKFPDYRRVIPRGGDKTVQIAHDVFKQSLQRVAILSNEKLRGVFLNFNADSL 306
Query: 295 KITVSSSNREKA 306
++ ++ +++A
Sbjct: 307 QLRANNPEQDEA 318
>gi|323135990|ref|ZP_08071073.1| DNA polymerase III, beta subunit [Methylocystis sp. ATCC 49242]
gi|322399081|gb|EFY01600.1| DNA polymerase III, beta subunit [Methylocystis sp. ATCC 49242]
Length = 372
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 170/308 (55%), Gaps = 8/308 (2%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ A+L L V +VE++ +PIL+N+L+ + ++ +TD +++IT G
Sbjct: 3 VTIERAALLRALGHVHRVVERRTTIPILANVLIDARDDALTLKATDLDLEITEKAPAEVG 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ A DI+R LPE +V++ E + ++SG+S+F L TL ++P +T
Sbjct: 63 QPGATTL-PAHTLYDIVRKLPEGAQVSLDASGEAGQLTLRSGRSRFNLSTLPESDFPDVT 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIAVSSDGH 178
+ + F L+ LK ++ F+I+ ++ RYYLNG+ + + + AV++DGH
Sbjct: 122 -SGDFSHRFQLAPADLKRLIEKTQFAISSEETRYYLNGIYIHAMDVDGQLMLRAVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL ++ + +I+PRK V +QRL+E+ + V +++S N+++ F + + +
Sbjct: 181 RLARLELPAPAGCADMPGVILPRKAVTEVQRLIEDAQGDVSVELSTNKMRFSFGDALLTT 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY VI +K V R+ +++ R+S IS+++ + V++ + L ++V
Sbjct: 241 KLIDGTFPDYSRVIPAGNDKRLTVERDVFAKAVDRVSTISSERGRAVKMALTEGKLVLSV 300
Query: 299 SSSNREKA 306
++ ++ A
Sbjct: 301 TNPDQGSA 308
>gi|212659782|gb|ACJ36975.1| DNA polymerase III subunit beta [Xylella fastidiosa]
Length = 266
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 98/270 (36%), Positives = 159/270 (58%), Gaps = 16/270 (5%)
Query: 22 IVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDIL 81
+VE++ IL+N+L+ N +++S TD EV++ + T + S I + ARK +I+
Sbjct: 4 VVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTKIEDPESG-EITIPARKIYEIV 62
Query: 82 RSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFT----LSQKT 137
R+LP+ ++++Y + + +++G+S+FTL TL A ++P S E T +++
Sbjct: 63 RALPDASQLSVYQSDDKITLQAGRSRFTLATLPANDFP-----SIDKIEVTERIIIAEVL 117
Query: 138 LKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSD- 196
LK ++ F++AQQD+RYYLNGLL+ F K + +SDGH LT + K + D
Sbjct: 118 LKELIERTAFAMAQQDVRYYLNGLLVDFPKTKLPCGASDGHPLTLGGTEL--KQAKAKDL 175
Query: 197 ---IIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVIS 253
II+PRK V LQRLLE + +EL+I+ N I++ ++ SKLIDG F DY+ VI
Sbjct: 176 KRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVIP 235
Query: 254 NKYEKSFLVNRNKLLRSLQRISIISNDKLK 283
++ V R L +LQR +I+SN+K +
Sbjct: 236 IGADREVKVAREVLRDALQRAAILSNEKYR 265
>gi|304392440|ref|ZP_07374381.1| DNA polymerase III, beta subunit [Ahrensia sp. R2A130]
gi|303295544|gb|EFL89903.1| DNA polymerase III, beta subunit [Ahrensia sp. R2A130]
Length = 371
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 171/304 (56%), Gaps = 7/304 (2%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L L V +VE++N +PILSN+L+ + +TD ++++T T S
Sbjct: 6 ERANLLKSLNHVQRVVERRNTIPILSNVLLKAEDGGLMLKATDLDLEVTEKTTAEVEQSG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSK 126
V+A DI+R LP+ +V + + E+ + +++G+S+F LQ L ++P +T ++
Sbjct: 66 ATT-VSAHTLYDIVRKLPDGSQVLLAVDESNGLLVRAGRSQFRLQMLPESDFPDLTA-AE 123
Query: 127 YDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGHRLTY 182
+ F + K +++ F+I+ ++ RYYLNG+ L + K+ + AV++DGHRL
Sbjct: 124 FTHTFRMGCADFKALIDRTQFAISTEETRYYLNGIYLHAVEADGKEMLRAVATDGHRLAQ 183
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
Q S II+PRKTV +Q+LLE+ + V +++S+++I+ + + SKLID
Sbjct: 184 AQTEAPDGASGMPGIIVPRKTVGEIQKLLEDPDAFVTVELSDSKIRFTVGEVVLTSKLID 243
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSN 302
G F DY VI + K L++R ++ R+S I++D+ + V+L I L ++V++ +
Sbjct: 244 GTFPDYNRVIPSGNTKELLLDRATFSSAVDRVSTIASDRGRAVKLSISDGQLTLSVNNPD 303
Query: 303 REKA 306
A
Sbjct: 304 SGSA 307
>gi|408788182|ref|ZP_11199903.1| DNA polymerase III subunit beta [Rhizobium lupini HPC(L)]
gi|408485771|gb|EKJ94104.1| DNA polymerase III subunit beta [Rhizobium lupini HPC(L)]
Length = 372
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 172/309 (55%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + +TD +++IT T +
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNVLLRASGANLDMKATDLDLEITEATPAMVEQAG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A +I+R LP+ +V + + M + SG+SKF+LQ L ++P +T +
Sbjct: 66 ATT-VPAHLLYEIVRKLPDGSEVLLATNPDGSSMTVASGRSKFSLQCLPEADFPDLTAGT 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIAVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ + N + AV++DGHRL
Sbjct: 125 -FSHTFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGELKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V+ IIIPRKTV LQ+L++N E V +++S+ +I++ ++ + SKLI
Sbjct: 184 RADVDAPSGSEGMPGIIIPRKTVGELQKLMDNPELEVTVEVSDAKIRLTIGSVVLTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ +++ R+S IS+++ + V+L + L +TV +
Sbjct: 244 DGTFPDYQRVIPTGNDKEMRVDCQSFAQAVDRVSTISSERGRAVKLALTNGQLTLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|307942711|ref|ZP_07658056.1| DNA polymerase III, beta subunit [Roseibium sp. TrichSKD4]
gi|307773507|gb|EFO32723.1| DNA polymerase III, beta subunit [Roseibium sp. TrichSKD4]
Length = 372
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 176/311 (56%), Gaps = 14/311 (4%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQI--TTYTAVGYGN 65
E+ +L L V +VE++N +PILSN+L+ + ++ +TD +++I + V G
Sbjct: 6 ERTDLLKSLTHVHRVVERRNTIPILSNVLLRADGGSLNLKATDLDLEIVESIPAMVEMGG 65
Query: 66 SSINIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTL 123
++ V A F DI+R LP+ +V + +N + I++G+S+FTLQ L ++P +T
Sbjct: 66 ATT---VPAHMFYDIVRKLPDGSQVVLETTGDNSTLEIRAGRSRFTLQMLPESDFPDLTA 122
Query: 124 NSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGHR 179
+ F L+ ++ +++ F+I+ ++ RYYLNG+ L + + AV++DGHR
Sbjct: 123 G-DFSHGFALTAGDIRKLIDTTQFAISTEETRYYLNGIYLHTVNTPSGERFRAVATDGHR 181
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L +V II+PRKTV +Q+LLE + V++++S +I+I + + SK
Sbjct: 182 LAQAEVTAPNGSHGMPGIIVPRKTVGEIQKLLEEPDANVQIELSETKIRITTGAVVLTSK 241
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG F DY VI +K V+R++ ++ R+S IS+++ + V+L + + +TV
Sbjct: 242 LIDGTFPDYGRVIPQGNDKEMRVDRDEFKEAVDRVSTISSERGRAVKLSLSDGRMVLTV- 300
Query: 300 SSNREKASSTD 310
+N + S+T+
Sbjct: 301 -NNPDSGSATE 310
>gi|424909236|ref|ZP_18332613.1| DNA polymerase III, beta subunit [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392845267|gb|EJA97789.1| DNA polymerase III, beta subunit [Rhizobium leguminosarum bv.
viciae USDA 2370]
Length = 393
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 172/309 (55%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + +TD +++IT T +
Sbjct: 27 ERSNLLKSLNHVHRVVERRNTIPILSNVLLRASGANLDMKATDLDLEITEATPAMVEQAG 86
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A +I+R LP+ +V + + M + SG+SKF+LQ L ++P +T +
Sbjct: 87 ATT-VPAHLLYEIVRKLPDGSEVLLATNPDGSSMTVASGRSKFSLQCLPEADFPDLTAGT 145
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIAVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ + N + AV++DGHRL
Sbjct: 146 -FSHTFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGELKLRAVATDGHRLA 204
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V+ IIIPRKTV LQ+L++N E V +++S+ +I++ ++ + SKLI
Sbjct: 205 RADVDAPSGSEGMPGIIIPRKTVGELQKLMDNPELEVTVEVSDAKIRLTIGSVVLTSKLI 264
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ +++ R+S IS+++ + V+L + L +TV +
Sbjct: 265 DGTFPDYQRVIPTGNDKEMRVDCQSFAQAVDRVSTISSERGRAVKLALTNGQLTLTV--N 322
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 323 NPDSGSATE 331
>gi|149184745|ref|ZP_01863063.1| DNA polymerase III subunit beta [Erythrobacter sp. SD-21]
gi|148832065|gb|EDL50498.1| DNA polymerase III subunit beta [Erythrobacter sp. SD-21]
Length = 374
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 92/307 (29%), Positives = 166/307 (54%), Gaps = 8/307 (2%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L L V S+VE++N +PILSN+L+ + ++TD ++Q+ + S
Sbjct: 6 ERATLLRCLSHVQSVVERRNTIPILSNVLIEAEGNGLRVMATDLDLQVVEHIEAASVESD 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V+A DI R LPE +V++ M +K+G+S+F L TL ++P M +
Sbjct: 66 GAITVSAHLLFDIARKLPEGSQVSLETAENRMDVKAGRSRFKLPTLPRDDFP-MIVEGDL 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN---IIAVSSDGHRLTYYQ 184
F+L KTL +++ F+I+ ++ RYYLNG+ L ++ + A ++DGHRL +
Sbjct: 125 PTSFSLPAKTLAEMIDRTRFAISTEETRYYLNGIFLHVSDEDQPVLKAAATDGHRLARFT 184
Query: 185 VNIDKKFSSCSDIIIPRKTVFTLQRLLENK-ENPVELKISNNQIKIIF---SNIEIISKL 240
+ + D+I+PRK V L++LL+ K + V++ +S ++I+ + + SKL
Sbjct: 185 LARPEGAEGMPDVIVPRKAVAELRKLLDEKMDGDVQIDLSASKIRFTLGGEGGVVLTSKL 244
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG F DY VI +K ++ + R++ I+ +K + V++ + + + +TV+S
Sbjct: 245 IDGTFPDYSRVIPTGNDKLLKIDPKSFFAGVDRVATIATEKTRAVKMGLDKDRVTLTVTS 304
Query: 301 SNREKAS 307
+ AS
Sbjct: 305 PDNGTAS 311
>gi|212659786|gb|ACJ36977.1| DNA polymerase III subunit beta [Xylella fastidiosa]
Length = 264
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 98/268 (36%), Positives = 158/268 (58%), Gaps = 16/268 (5%)
Query: 22 IVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDIL 81
+VE++ IL+N+L+ N +++S TD EV++ + T + S I + ARK +I+
Sbjct: 4 VVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTKIEDPESG-EITIPARKIYEIV 62
Query: 82 RSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFT----LSQKT 137
R+LP+ ++++Y + + +++G+S+FTL TL A ++P S E T +++
Sbjct: 63 RALPDASQLSVYQSDDKITLQAGRSRFTLATLPANDFP-----SIDKIEVTERIIIAEVL 117
Query: 138 LKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSD- 196
LK ++ F++AQQD+RYYLNGLL+ F K + +SDGH LT + K + D
Sbjct: 118 LKELIERTAFAMAQQDVRYYLNGLLVDFPKTKLPCGASDGHPLTLGGTEL--KQAKAKDL 175
Query: 197 ---IIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVIS 253
II+PRK V LQRLLE + +EL+I+ N I++ ++ SKLIDG F DY+ VI
Sbjct: 176 KRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVIP 235
Query: 254 NKYEKSFLVNRNKLLRSLQRISIISNDK 281
++ V R L +LQR +I+SN+K
Sbjct: 236 IGADREVKVAREVLRDALQRAAILSNEK 263
>gi|407767905|ref|ZP_11115284.1| DNA polymerase III subunit beta [Thalassospira xiamenensis M-5 =
DSM 17429]
gi|407288618|gb|EKF14095.1| DNA polymerase III subunit beta [Thalassospira xiamenensis M-5 =
DSM 17429]
Length = 372
Score = 170 bits (430), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 98/315 (31%), Positives = 175/315 (55%), Gaps = 14/315 (4%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQI--TTY 58
M+L + E+ A+L L V S+VE++N +PILSNIL+ ++++S +TD ++++ TT
Sbjct: 1 MKLTI--ERAALLKSLTHVQSVVERRNTIPILSNILLRAENDQLSLTATDMDLEVIETTT 58
Query: 59 TAVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIE--NKHMFIKSGKSKFTLQTLDAK 116
V ++ A +I+R LPE +V I +E + + +G+SKF L L
Sbjct: 59 AEVSEAGATTT---PAHTLYEIVRKLPEGSQVQIALEPGAGRLTLSAGRSKFNLAVLPVD 115
Query: 117 EYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIA 172
++P+M+ + F L+ L+ +++ F+I+ ++ RYYLNG+ + K + A
Sbjct: 116 DFPVMS-GGELPVSFGLAAAELRGLIDRAEFAISTEETRYYLNGIYFHATDAEGTKILRA 174
Query: 173 VSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFS 232
V++DGHRL + + + +I+PRKTV L++L+E V++ +S+ +I+ F
Sbjct: 175 VATDGHRLARVEAPLPDGAENMPGVIVPRKTVGELRKLIEETGEAVDIALSDTKIRFGFG 234
Query: 233 NIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPN 292
+ SKLIDG F DY+ VI + +K+ + ++ R+S IS +K + V++V+ N
Sbjct: 235 KAVLTSKLIDGTFPDYERVIPSGNDKTLDIECKAFADAVDRVSAISIEKSRAVKVVMSGN 294
Query: 293 YLKITVSSSNREKAS 307
L ++ SS AS
Sbjct: 295 TLTLSASSPEHGTAS 309
>gi|402490662|ref|ZP_10837451.1| DNA polymerase III subunit beta [Rhizobium sp. CCGE 510]
gi|401810688|gb|EJT03061.1| DNA polymerase III subunit beta [Rhizobium sp. CCGE 510]
Length = 372
Score = 170 bits (430), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 174/309 (56%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + + +TD +++IT T +
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPANVEQAG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A DI+R L + +V + + M ++SG+SKF+LQ L ++P +T +
Sbjct: 66 ATT-VPAHLLYDIVRKLSDGSEVLLATSPDGGSMTVQSGRSKFSLQCLPQSDFPDLTAGT 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL-SFQKKNII---AVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ + + K + AV++DGHRL
Sbjct: 125 -FTHSFKLKAADLKMLIDRTQFAISTEETRYYLNGIFFHTIESKGDLKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V+ IIIPRKTV LQ+L++N E V +++S+ +I++ +I + SKLI
Sbjct: 184 RADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEVMVTVEVSDAKIRLTIGSIVMTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ +++ R+S IS+++ + V+L + L +TV +
Sbjct: 244 DGTFPDYQRVIPTGNDKEMRVDCTTFAQAVDRVSTISSERGRAVKLALSEGQLMLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|417866328|ref|ZP_12511370.1| hypothetical protein C22711_3258 [Escherichia coli O104:H4 str.
C227-11]
gi|341919617|gb|EGT69228.1| hypothetical protein C22711_3258 [Escherichia coli O104:H4 str.
C227-11]
Length = 291
Score = 170 bits (430), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 140/252 (55%), Gaps = 3/252 (1%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLEN-KENPVELKISNNQIKIIFSNIEIISKLIDGKFL 246
+ S S +I+PRK V L R+L+ +++ + + SKL+DG+F
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRMLDGARQSAARADWQQQYSRPHVGDFIFTSKLVDGRFP 243
Query: 247 DYKYVISNKYEK 258
DY+ V+ +K
Sbjct: 244 DYRRVLPKNPDK 255
>gi|359429644|ref|ZP_09220667.1| DNA polymerase III beta subunit [Acinetobacter sp. NBRC 100985]
gi|358234899|dbj|GAB02206.1| DNA polymerase III beta subunit [Acinetobacter sp. NBRC 100985]
Length = 382
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 170/312 (54%), Gaps = 14/312 (4%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN--S 66
K ++L+ L V+ VE+++ L ILSN+ + + ++ +D EV++ T + G
Sbjct: 7 KESLLNVLSHVVGAVERRHTLNILSNVKIQTTQQALTITGSDLEVELVASTTLAEGACLE 66
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
+ V ARK ++I +SLP + + I E++ +KSG S+F L TL A++YP++T +
Sbjct: 67 AGETTVPARKLVEICKSLPTAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYPLLTTEN 126
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
+ ++Q+ LK + F++A QD+R+YL G LL + + V++DGHRL +V
Sbjct: 127 SQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDQNQLRTVTTDGHRLALCEV 186
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSN-----------I 234
S+ I+PRK V LQRLL ++ + L I + + + +
Sbjct: 187 LASSTASAPIQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPSRDKEQGDIVV 246
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+KLIDGKF DY+ VI +K + + +SLQR++I+SN+KL+GV L + L
Sbjct: 247 RFTTKLIDGKFPDYRRVIPKGGDKHVFIAHDVFKQSLQRVAILSNEKLRGVFLNFNQDSL 306
Query: 295 KITVSSSNREKA 306
++ ++ +++A
Sbjct: 307 QLRANNPEQDEA 318
>gi|148251628|ref|YP_001236213.1| DNA polymerase III subunit beta [Bradyrhizobium sp. BTAi1]
gi|146403801|gb|ABQ32307.1| DNA polymerase III, beta subunit [Bradyrhizobium sp. BTAi1]
Length = 372
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 178/312 (57%), Gaps = 10/312 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ +L L V +VE++N +PIL N+LV + ++S +TD ++++T A
Sbjct: 3 VTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENARLSLRATDLDLEVTETLAAET- 61
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPIMT 122
++ V A F DI+R LP+ ++ + + + + I++G+SKFTLQTL ++P +
Sbjct: 62 ATAGATTVPAHMFYDIVRKLPDGSQIVLESDGERAVLAIRAGRSKFTLQTLPESDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGH 178
F + K +K +++ F+I+ ++ RYYLNG+ L + ++ ++ AV++DGH
Sbjct: 122 AGD-MTHAFGVPAKDIKSLIDRTQFAISTEETRYYLNGIYLHAGGTAKQPSLRAVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL + + +I+PRKTV +QRL+E+ ++ + +++S +I+ + + S
Sbjct: 181 RLAQVDLPQPAGAAEMPGVIVPRKTVGEVQRLIEDNDSEIRIELSQGKIRFTLGQVVLTS 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY VI +K +V++ ++ R+S IS+++ + V+L + P L ++V
Sbjct: 241 KLIDGTFPDYGRVIPQNNDKELIVDKADFAAAVDRVSTISSERGRAVKLALSPGRLVLSV 300
Query: 299 SSSNREKASSTD 310
+N + S+T+
Sbjct: 301 --TNPDSGSATE 310
>gi|255320701|ref|ZP_05361878.1| DNA polymerase III, beta subunit [Acinetobacter radioresistens
SK82]
gi|262380668|ref|ZP_06073821.1| DNA polymerase III, beta subunit [Acinetobacter radioresistens
SH164]
gi|255302317|gb|EET81557.1| DNA polymerase III, beta subunit [Acinetobacter radioresistens
SK82]
gi|262297616|gb|EEY85532.1| DNA polymerase III, beta subunit [Acinetobacter radioresistens
SH164]
Length = 382
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 169/312 (54%), Gaps = 14/312 (4%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN--S 66
K ++L+ L V+ VE+++ L ILSN+ + + + ++ +D EV++ T + G
Sbjct: 7 KESLLNVLSHVVGAVERRHTLNILSNVKIQASPQALTITGSDLEVELVASTGLSEGACLQ 66
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V ARK +DI +SLP + + I E++ +KSG S+F L TL A++YP++ ++
Sbjct: 67 PGETTVPARKLMDICKSLPSAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYPLLNHDN 126
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
+ ++Q+ LK + F++A QD+R+YL G LL + + AV++DGHRL +
Sbjct: 127 SQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDETQLRAVTTDGHRLALCET 186
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFS-----------NI 234
S I+PRK V LQRLL ++ + L I + + +
Sbjct: 187 LASSTASQPVQAIVPRKAVAELQRLLSIEDEQLTLLIGRELLNVTIQTPSRDKEQGEITV 246
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+KLIDGKF DY+ VI +K+ + + +SLQR++I+SN+KL+GV L + L
Sbjct: 247 RFTTKLIDGKFPDYRRVIPRGGDKTVQIAHDVFKQSLQRVAILSNEKLRGVFLNFNADSL 306
Query: 295 KITVSSSNREKA 306
++ ++ +++A
Sbjct: 307 QLRANNPEQDEA 318
>gi|452751815|ref|ZP_21951560.1| DNA polymerase III beta subunit [alpha proteobacterium JLT2015]
gi|451961034|gb|EMD83445.1| DNA polymerase III beta subunit [alpha proteobacterium JLT2015]
Length = 366
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 163/293 (55%), Gaps = 2/293 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L L V S+VE++N +PILSN+L+ + +TD ++Q+ A +
Sbjct: 6 ERATLLKCLGHVQSVVERRNTIPILSNVLIEAEEGGLKLTATDLDLQVVDSIAAQV-ETG 64
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+ V+A DI+R LP+ +V + + M I++G+++F L TL ++P M S
Sbjct: 65 GAVTVSAHTLFDIVRKLPDGSQVALDAAEEKMQIRAGRARFNLATLPRDDFP-MIAESDL 123
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
F L +TL I++ F+I+ ++ RYYLNG+ + AV++DGHRL ++
Sbjct: 124 PTSFNLPGETLAEIIDKTRFAISTEETRYYLNGIFMHVSDGKFYAVATDGHRLARVTLDP 183
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ + D+I+PRK V L++LL+ + VE+ +S+++++ + SKLIDG F D
Sbjct: 184 PEGAAEMPDVIVPRKCVSELRKLLDEADGDVEIGLSDSKVRFRVGTAVLTSKLIDGTFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
Y VI ++ ++ L + + R+S I+ +K K V++ ++ + + ++V+S
Sbjct: 244 YSRVIPTGNDRLLKIDPKTLSQGVDRVSAIAAEKTKAVKVTLEQDKVVLSVTS 296
>gi|188579289|ref|YP_001922734.1| DNA polymerase III subunit beta [Methylobacterium populi BJ001]
gi|179342787|gb|ACB78199.1| DNA polymerase III, beta subunit [Methylobacterium populi BJ001]
Length = 373
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 173/313 (55%), Gaps = 11/313 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ A+L L V +VE++N +PILSN+L+ + +TD ++++T A
Sbjct: 3 VTVERAALLRSLGHVHRVVERRNTIPILSNVLLRTGDNGLQLKATDLDIEVTETVAADVL 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
++ V A DI+R LPE +V++ E M I+SG+S+F L L ++P +
Sbjct: 63 DAGATT-VPAHVIYDIVRKLPEGAQVSLETSGETGQMTIRSGRSRFALGALPEGDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL-SFQKKNII---AVSSDGH 178
+ F++ LK ++ F+I+ ++ RYYLNG+ + + + + AV++DGH
Sbjct: 122 AG-ELPHSFSIPASELKQLIEKTQFAISTEETRYYLNGIYFHTVEVEGALKLRAVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSN-IEII 237
RL + + II+PRK V +Q+L+++ V++++S +I++ F+ + +I
Sbjct: 181 RLARVETEAPEDSRGMPGIIVPRKAVAEIQKLVDDGGESVQVELSPAKIRLTFAGGVTLI 240
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKLIDG F DY+ VI +K V R+ +++ R+S IS+++ + V+L + L ++
Sbjct: 241 SKLIDGTFPDYQRVIPTGNDKRLTVERDAFAKAVDRVSTISSERGRAVKLAVAEGRLALS 300
Query: 298 VSSSNREKASSTD 310
V +N + S+T+
Sbjct: 301 V--TNPDAGSATE 311
>gi|418296877|ref|ZP_12908720.1| DNA polymerase III subunit beta [Agrobacterium tumefaciens
CCNWGS0286]
gi|355539052|gb|EHH08294.1| DNA polymerase III subunit beta [Agrobacterium tumefaciens
CCNWGS0286]
Length = 372
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 172/309 (55%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + +TD +++IT T +
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNVLLRASGANLDMKATDLDLEITEATPAMVEQAG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A +I+R LP+ +V + + M + SG+SKF+LQ L ++P +T +
Sbjct: 66 ATT-VPAHLLYEIVRKLPDGSEVLLATNPDGSSMTVASGRSKFSLQCLPETDFPDLTAGT 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIAVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ + N + AV++DGHRL
Sbjct: 125 -FSHTFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGDLKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V+ IIIPRKTV LQ+L++N E V +++S+ +I++ ++ + SKLI
Sbjct: 184 RADVDAPSGSEGMPGIIIPRKTVGELQKLMDNPELEVTVEVSDAKIRLTIGSVVLTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ +++ R+S IS+++ + V+L + L +TV +
Sbjct: 244 DGTFPDYQRVIPTGNDKEMRVDCQTFAQAVDRVSTISSERGRAVKLALTNGQLTLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|194097591|ref|YP_002000627.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae NCCP11945]
gi|193932881|gb|ACF28705.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae NCCP11945]
Length = 207
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 125/203 (61%), Gaps = 2/203 (0%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L++ E++++L PLQ V IVE+++ LPILSN+L+ + L+TD E+QI T G
Sbjct: 2 LILQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGRGGQTKLLATDLEIQIDTAGPEG 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
G I A+KF DILR+LP V++ ++ + +K+GKS+F LQTL A ++P+M
Sbjct: 62 -GAGDFRITTNAKKFQDILRALPAGALVSLDWDDNRLTLKAGKSRFALQTLPAADFPMMN 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
+ F+L Q+ K +L+ V +S+A QDIRYYLNGLL+ + + V++DGHRL Y
Sbjct: 121 VGEDISATFSLGQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRLVATDGHRLDY 180
Query: 183 YQVNIDKKFSSCSDIIIPRKTVF 205
ID +++I+PRK +
Sbjct: 181 AACAIDADLPR-AEVILPRKRCW 202
>gi|212659823|gb|ACJ36985.1| DNA polymerase III subunit beta [Xylella fastidiosa]
Length = 265
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 154/263 (58%), Gaps = 10/263 (3%)
Query: 13 LHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIV 72
L PL V+++VE++ IL+N+L+ N +++S TD EV++ + T + S I +
Sbjct: 3 LKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESG-EITI 61
Query: 73 AARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFT 132
ARK +I+R+LP+ ++++Y + + +++G+SKFTL TL A ++P S E T
Sbjct: 62 PARKIYEIVRALPDASQLSVYQSDDKITLQAGRSKFTLATLPANDFP-----SIDKIEVT 116
Query: 133 ----LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
+++ LK ++ F++AQQD+RYYLNGLL + + V++DGHRL + ++
Sbjct: 117 ERIIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLRDTKLRCVATDGHRLALCETELE 176
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ II+PRK V LQRLLE + +EL+I+ N I++ ++ SKLIDG F DY
Sbjct: 177 QAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDY 236
Query: 249 KYVISNKYEKSFLVNRNKLLRSL 271
+ VI ++ V R L +L
Sbjct: 237 EGVIPIGADREVKVAREVLRDAL 259
>gi|84394124|ref|ZP_00992858.1| DNA polymerase III subunit beta, partial [Vibrio splendidus 12B01]
gi|84375270|gb|EAP92183.1| DNA polymerase III subunit beta [Vibrio splendidus 12B01]
Length = 304
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 146/238 (61%), Gaps = 2/238 (0%)
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
+I V +RKF+DI R LP++ +T+ ++ + ++SG+S+F+L TL A ++P + + +
Sbjct: 5 SITVPSRKFLDICRGLPDSSVITVVLDGDRVQVRSGRSRFSLATLPAADFPNIE-DWSSE 63
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
E +++Q L+ ++ FS+A QD+RYYLNG+L + + +V++DGHR+ Q +
Sbjct: 64 VEVSVTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIEGSILRSVATDGHRMAVSQAQLG 123
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
F+ II+PRK V L +LL+ E PV L+I N+ ++ +N SKL+DG+F DY
Sbjct: 124 ADFAQ-KQIIVPRKGVQELVKLLDAPEQPVTLQIGNSNVRAEVNNYVFTSKLVDGRFPDY 182
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ V+ K+ ++L + R +I+SN+K +GVR+ + ++IT ++ +E+A
Sbjct: 183 RRVMPQNTTKTLEAGCDELRSAFSRAAILSNEKFRGVRVNLVDTEMRITANNPEQEEA 240
>gi|226952831|ref|ZP_03823295.1| DNA polymerase III, beta chain [Acinetobacter sp. ATCC 27244]
gi|226836452|gb|EEH68835.1| DNA polymerase III, beta chain [Acinetobacter sp. ATCC 27244]
Length = 382
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 169/312 (54%), Gaps = 14/312 (4%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN--S 66
K ++++ L V+ VE+++ L ILSN+ + ++ +D EV++ T + G
Sbjct: 7 KESLVNVLSHVVGAVERRHTLNILSNVKIQTTPHALTITGSDLEVELVASTNLAEGACLE 66
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V ARK ++I +SLP V + I E++ +KSG S+F L TL A++YP++T +
Sbjct: 67 PGETTVPARKLVEICKSLPTAALVDLQITEDQRCILKSGNSRFVLGTLPAEDYPLLTTEN 126
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
+ ++Q+ LK + F++A QD+R+YL G LL + + V++DGHRL +V
Sbjct: 127 SQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDQNQLRTVTTDGHRLALCEV 186
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFS-----------NI 234
S+ I+PRK V LQRLL ++ + L I + + + +
Sbjct: 187 LASSTASAPMQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPSRDKEQSDITV 246
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+KLIDGKF DY+ VI +K L+ + +SLQR++I+SN+KL+GV L + L
Sbjct: 247 RFTTKLIDGKFPDYRRVIPRGGDKHVLIAHDVFKQSLQRVAILSNEKLRGVFLNFNQDSL 306
Query: 295 KITVSSSNREKA 306
++ ++ +++A
Sbjct: 307 QLRANNPEQDEA 318
>gi|430006201|emb|CCF22004.1| DNA polymerase III subunit beta [Rhizobium sp.]
Length = 372
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 170/309 (55%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + +TD +++IT A
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNVLLRASGADLELKATDLDLEITEAVAAMVEQPG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A +I+R LPE +V + + M ++SG+SKF+LQ L ++P +T S
Sbjct: 66 ATT-VPAHLLYEIVRKLPEGSEVRLATNPDGGSMTVQSGRSKFSLQCLPEADFPDLTAGS 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ + + AV++DGHRL
Sbjct: 125 -FSHTFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIEAGGDLKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V IIIPRKTV LQ+L++N + V +++S+ +I++ +I + SKLI
Sbjct: 184 RADVEAPSGSEGMPGIIIPRKTVGELQKLVDNPDLMVTVEVSDAKIRLTIGSIIMTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ R++ R+S IS+++ + V+L + L +TV +
Sbjct: 244 DGTFPDYQRVIPTNNDKEMRVDCQSFTRAVDRVSTISSERGRAVKLSLADGQLTLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|409435723|ref|ZP_11262931.1| DNA polymerase III, beta subunit [Rhizobium mesoamericanum STM3625]
gi|408752481|emb|CCM74078.1| DNA polymerase III, beta subunit [Rhizobium mesoamericanum STM3625]
Length = 372
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 173/309 (55%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSNIL+ + + +TD ++++T T +
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNILLRAEGQNLDMKATDLDLEVTEATPANVEQAG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A DI+R LP+ +V + + M ++SG+SKF+LQ L ++P +T +
Sbjct: 66 ATT-VPAHLLYDIVRKLPDGSEVLLATSTDGGSMTVQSGRSKFSLQCLPESDFPDLTAGT 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL-SFQKKNII---AVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ + + K + AV++DGHRL
Sbjct: 125 -FSHTFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESKGDLKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
VN IIIPRKTV LQ+L++ + V +++S+ +I++ +I + SKLI
Sbjct: 184 RADVNAPSGSEGMPGIIIPRKTVGELQKLVDVPDAIVTVEVSDAKIRLSIGSIVMTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ +++ R+S IS+++ + V+L I L +TV +
Sbjct: 244 DGTFPDYQRVIPANNDKEMRVDCTTFAQAVDRVSTISSERGRAVKLAISDGQLLLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|424863818|ref|ZP_18287730.1| DNA polymerase III, beta subunit [SAR86 cluster bacterium SAR86A]
gi|400757139|gb|EJP71351.1| DNA polymerase III, beta subunit [SAR86 cluster bacterium SAR86A]
Length = 367
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 169/298 (56%), Gaps = 1/298 (0%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
K I+ L + + +VEK+ LPILSN+L+ + + +TD E +I+T + + NS
Sbjct: 7 KEEIVKSLNLTLGVVEKRQTLPILSNVLIEVDESSLKLTATDLESEISTTSTISNFNSGG 66
Query: 69 NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
ARK D+ R LP+ ++ +++ ++ I+SG K+ L TL + ++P+
Sbjct: 67 KTTAPARKLSDLCRLLPDMAEIHFFLDGDNLKIESGSGKYNLSTLPSDDFPVFEFEDSQG 126
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
+ +S + LK I+ F++ QD R+YLNGL +S KNI +V++D HRL ++
Sbjct: 127 -QINISSENLKTIIMKTSFAMGNQDWRHYLNGLFISIDDKNITSVATDAHRLALASSTLN 185
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ +D I+PRK++ + +L+ + V +KIS + I + + + +SKLI+GKF DY
Sbjct: 186 EASMETTDGIVPRKSINEIGKLVGDNSENVLIKISQSSILVEAAGTKFVSKLIEGKFPDY 245
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
+ VI +++R SL R+S++S++K KGVR++ K N L I+ ++ +E+
Sbjct: 246 EQVIPTGESSLLVIDRKNFSDSLSRVSVLSSEKYKGVRIITKKNSLNISANNPEKEQG 303
>gi|163849459|ref|YP_001637502.1| DNA polymerase III subunit beta [Methylobacterium extorquens PA1]
gi|163661064|gb|ABY28431.1| DNA polymerase III, beta subunit [Methylobacterium extorquens PA1]
Length = 373
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 173/313 (55%), Gaps = 11/313 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ A+L L V +VE++N +PILSN+L+ + +TD ++++T A
Sbjct: 3 VTVERAALLKSLGHVHRVVERRNTIPILSNVLLRTGENGLQLKATDLDIEVTETVAADVL 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
++ V A DI+R LPE +V++ E M I+SG+S+F L L ++P +
Sbjct: 63 DAGATT-VPAHVIYDIVRKLPEGAQVSLETSGETGQMTIRSGRSRFALGALPEGDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL-SFQKKNII---AVSSDGH 178
+ F + LK ++ F+I+ ++ RYYLNG+ + + + + AV++DGH
Sbjct: 122 AG-ELPHSFAIPAAELKQLIEKTQFAISTEETRYYLNGIYFHTLEVEGALKLRAVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSN-IEII 237
RL + + + II+PRK V +Q+L+++ V++++S +I++ F+ + +I
Sbjct: 181 RLARVETDAPEGSRGMPGIIVPRKAVAEIQKLVDDGGESVQVELSPAKIRLTFAGGVILI 240
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKLIDG F DY+ VI +K V R+ +++ R+S IS+++ + V+L + L ++
Sbjct: 241 SKLIDGTFPDYQRVIPTGNDKRLTVERDAFAKAVDRVSTISSERGRAVKLAVSEGRLALS 300
Query: 298 VSSSNREKASSTD 310
V +N + S+T+
Sbjct: 301 V--TNPDAGSATE 311
>gi|167627067|ref|YP_001677567.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167597068|gb|ABZ87066.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 367
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 106/307 (34%), Positives = 173/307 (56%), Gaps = 4/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M V+N ++ +L PLQ ++S+ K+ +P+LS IL N+ + ++D + +I+ A
Sbjct: 1 MNFVLN--RDDLLKPLQSMLSVANSKSTMPLLSCILFDINNNNLKITASDLDTEISCNIA 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
V N++I + + A K +I+RSL + + I++ + I S S F L +L+A YP+
Sbjct: 59 VS-CNTNIKLALNADKIYNIVRSLNDNSMIDFRIDDNKVTIISNNSTFNLISLNADNYPL 117
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ N F LSQ+ I++ V FS+A D RY+LNG+ + AVS+DGHR+
Sbjct: 118 IDSNINEQASFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINSNLLRAVSTDGHRM 177
Query: 181 TYYQVNIDKK-FSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
+ + ID K S S IIP+K + L++++ E +++ + N +K F N ISK
Sbjct: 178 SITESIIDSKVLDSDSQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAEFGNYAFISK 237
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG++ DY+ VI K V++ L SL R SI++NDK KGVRL I + ++ +
Sbjct: 238 LIDGRYPDYQKVIPKNNTKLLAVDKQVLKNSLLRTSILANDKYKGVRLNISQGQVLLSAN 297
Query: 300 SSNREKA 306
+ + EKA
Sbjct: 298 NPDNEKA 304
>gi|402758624|ref|ZP_10860880.1| DNA polymerase III subunit beta [Acinetobacter sp. NCTC 7422]
Length = 382
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 170/312 (54%), Gaps = 14/312 (4%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN--S 66
K ++++ L V+ VE+++ L ILSN+ + + ++ +D EV++ T + G
Sbjct: 7 KESLVNVLSHVVGAVERRHTLNILSNVKIQTTQQALTITGSDLEVELVASTTLAEGACLE 66
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
+ V ARK ++I +SLP + + I E++ +KSG S+F L TL A++YP++T +
Sbjct: 67 AGETTVPARKLVEICKSLPTAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYPLLTTEN 126
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
+ ++Q+ LK + F++A QD+R+YL G LL + + V++DGHRL +V
Sbjct: 127 SQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDQNQLRTVTTDGHRLALCEV 186
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFS-----------NI 234
S+ I+PRK V LQRLL ++ + L I + + + +
Sbjct: 187 LASSNASAPIQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPSRDKEQGEITV 246
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+KLIDGKF DY+ VI +K + + +SLQR++I+SN+KL+GV L + L
Sbjct: 247 RFTTKLIDGKFPDYRRVIPKGGDKHVFIAHDVFKQSLQRVAILSNEKLRGVFLNFNQDSL 306
Query: 295 KITVSSSNREKA 306
++ ++ +++A
Sbjct: 307 QLRANNPEQDEA 318
>gi|254876147|ref|ZP_05248857.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia
ATCC 25015]
gi|254842168|gb|EET20582.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia
ATCC 25015]
Length = 367
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 173/307 (56%), Gaps = 4/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M V+N ++ +L PLQ ++S+ K+ +P+LS IL N+ + ++D + +I+ A
Sbjct: 1 MNFVLN--RDDLLKPLQSMLSVANSKSTMPLLSCILFDINNNNLKITASDLDTEISCNIA 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
V N+++ + + A K +I+RSL + + I++ + I S S F L +L+A YP+
Sbjct: 59 VS-CNTNVKLALNADKIYNIVRSLNDNSMIDFRIDDNKVTIISNNSTFNLISLNADNYPL 117
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ N F LSQ+ I++ V FS+A D RY+LNG+ + AVS+DGHR+
Sbjct: 118 IDSNINEQASFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINSNLLRAVSTDGHRM 177
Query: 181 TYYQVNIDKK-FSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
+ + ID K S S IIP+K + L++++ E +++ + N +K F N ISK
Sbjct: 178 SITESIIDSKVLDSDSQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAEFGNYAFISK 237
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG++ DY+ VI K V++ L SL R SI++NDK KGVRL I + ++ +
Sbjct: 238 LIDGRYPDYQKVIPKNNTKLLAVDKQVLKNSLLRTSILANDKYKGVRLNISQGQVLLSAN 297
Query: 300 SSNREKA 306
+ + EKA
Sbjct: 298 NPDNEKA 304
>gi|407772875|ref|ZP_11120177.1| DNA polymerase III subunit beta [Thalassospira profundimaris
WP0211]
gi|407284828|gb|EKF10344.1| DNA polymerase III subunit beta [Thalassospira profundimaris
WP0211]
Length = 372
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 175/315 (55%), Gaps = 14/315 (4%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQI--TTY 58
M+L + E+ A+L L V S+VE++N +PILSNIL+ +++++ +TD ++++ TT
Sbjct: 1 MKLTI--ERAALLKSLTHVQSVVERRNTIPILSNILLRAENDRLALTATDMDLEVIETTT 58
Query: 59 TAVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIE--NKHMFIKSGKSKFTLQTLDAK 116
V ++ A +I+R LPE +V I +E + + +G+SKF L L
Sbjct: 59 AEVSEPGATTT---PAHTLYEIVRKLPEGSQVQISLEPGAGRLTLSAGRSKFNLAVLPVD 115
Query: 117 EYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIA 172
++P+M+ F L+ L+ +++ F+I+ ++ RYYLNG+ + K + A
Sbjct: 116 DFPVMS-GGDLPVSFGLAAAELRGLIDRAEFAISTEETRYYLNGIYFHATDAEGTKILRA 174
Query: 173 VSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFS 232
V++DGHRL + + + +I+PRKTV L++L+E V++ +S+ +I+ F
Sbjct: 175 VATDGHRLARVEAPLPDGAENMPGVIVPRKTVGELRKLIEETGEAVDIALSDTKIRFGFG 234
Query: 233 NIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPN 292
+ + SKLIDG F DY+ VI + +K+ + ++ R+S IS +K + V++V+ N
Sbjct: 235 DAVLTSKLIDGTFPDYERVIPSGNDKTLDIECKAFADAVDRVSAISIEKSRAVKVVLSGN 294
Query: 293 YLKITVSSSNREKAS 307
L ++ SS AS
Sbjct: 295 TLTLSASSPEHGTAS 309
>gi|294648701|ref|ZP_06726161.1| DNA polymerase III, beta chain [Acinetobacter haemolyticus ATCC
19194]
gi|292825376|gb|EFF84119.1| DNA polymerase III, beta chain [Acinetobacter haemolyticus ATCC
19194]
Length = 382
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 169/312 (54%), Gaps = 14/312 (4%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN--S 66
K ++++ L V+ VE+++ L ILSN+ + ++ +D EV++ T + G
Sbjct: 7 KESLVNVLSHVVGAVERRHTLNILSNVKIQTTPHALTITGSDLEVELVASTNLAEGACLE 66
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V ARK ++I +SLP + + I E++ +KSG S+F L TL A++YP++T +
Sbjct: 67 PGETTVPARKLVEICKSLPTAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYPLLTTEN 126
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
+ ++Q+ LK + F++A QD+R+YL G LL + + V++DGHRL +V
Sbjct: 127 SQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDQNQLRTVTTDGHRLALCEV 186
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFS-----------NI 234
S+ I+PRK V LQRLL ++ + L I + + + +
Sbjct: 187 LASSTASAPMQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPSRDKEQSDITV 246
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+KLIDGKF DY+ VI +K L+ + +SLQR++I+SN+KL+GV L + L
Sbjct: 247 RFTTKLIDGKFPDYRRVIPRGGDKHVLIAHDVFKQSLQRVAILSNEKLRGVFLNFNQDSL 306
Query: 295 KITVSSSNREKA 306
++ ++ +++A
Sbjct: 307 QLRANNPEQDEA 318
>gi|410610869|ref|ZP_11321974.1| DNA polymerase III subunit beta [Glaciecola psychrophila 170]
gi|410169580|dbj|GAC35863.1| DNA polymerase III subunit beta [Glaciecola psychrophila 170]
Length = 317
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 144/237 (60%), Gaps = 1/237 (0%)
Query: 70 IIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDF 129
I V A+K +DI R L E + +E+ +KSG+SK++L TL A +YP + + + D
Sbjct: 18 ITVPAKKLLDICRGLNEGSSIDFSVESNKALLKSGRSKYSLSTLSADDYPNLE-DWQGDL 76
Query: 130 EFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDK 189
EF + Q LK +++ +F +AQQD+RYYLNG+ L + I V++DGHRL ++N
Sbjct: 77 EFEIPQSDLKRLIDSTHFCMAQQDVRYYLNGMSLETEDNLIRTVATDGHRLALCRLNYTN 136
Query: 190 KFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYK 249
+ +IIPRK V + RL+E+ + V++++ +N I+I ++ SKL+DG+F DY+
Sbjct: 137 ATLTNRQVIIPRKGVLEIIRLIEDNDKLVKVQVGSNHIRIFSTDFIFTSKLVDGRFPDYR 196
Query: 250 YVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
V+ +K +++ L + R SI+SN+K +GVRL + LKIT ++ +E+A
Sbjct: 197 RVLPKDGDKKIESSKDVLKHAFSRASILSNEKFRGVRLNLSNGELKITANNPEQEEA 253
>gi|154243960|ref|YP_001414918.1| DNA polymerase III subunit beta [Xanthobacter autotrophicus Py2]
gi|154158045|gb|ABS65261.1| DNA polymerase III, beta subunit [Xanthobacter autotrophicus Py2]
Length = 373
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 173/313 (55%), Gaps = 11/313 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ +L L V +VE++N +PIL+N+L+ + +TD ++++ G
Sbjct: 3 VTVERAELLKSLSHVHRVVERRNTIPILANVLIKAGKNGLELKATDLDLEVVESVPAETG 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ V A DI+R LPE +V + E + +K+ +++F+LQTL ++P +
Sbjct: 63 QAGATT-VPAHVLYDIVRKLPEGAQVQLEAGGERGTLTVKASRARFSLQTLPEADFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL-----SFQKKNIIAVSSDG 177
++ F + + +++ F+I+ ++ RYYLNG+ L + K + AV++DG
Sbjct: 122 AG-EFSHTFKVKGADFRRLVDKTQFAISTEETRYYLNGIYLHVTEGAGGKSMLRAVATDG 180
Query: 178 HRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
HRL ++ + +I+PRKTV +Q+LLE+KE + +S +I++ +I +
Sbjct: 181 HRLAQAELEAPAGAAGLPGVIVPRKTVAEIQKLLEDKEAEATVSLSTTKIRVQVGSIVLT 240
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKLIDG F DY VI +K+ +V++++ ++ R+S +S+++ + V+L + K+T
Sbjct: 241 SKLIDGTFPDYGRVIPQGNDKTLIVDKDEFAAAVDRVSTVSSERGRAVKLSLAEG--KMT 298
Query: 298 VSSSNREKASSTD 310
+S +N + S+T+
Sbjct: 299 LSVTNPDSGSATE 311
>gi|227824176|ref|YP_002828149.1| DNA polymerase III subunit beta [Sinorhizobium fredii NGR234]
gi|227343178|gb|ACP27396.1| DNA polymerase III, beta subunit [Sinorhizobium fredii NGR234]
Length = 372
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 168/305 (55%), Gaps = 8/305 (2%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + +TD +++IT T +
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNVLLRSDGASLEMKATDLDLEITEATPAQVEQAG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIY--IENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A DI+R LP+ +V + E M + SG+SKF+LQ L ++P +T S
Sbjct: 66 ATT-VPAHLLYDIVRKLPDGSEVRLATNAEGTAMTVASGRSKFSLQCLPQSDFPDLTAGS 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL-SFQKKN---IIAVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ + + + K + AV++DGHRL
Sbjct: 125 -FSHSFRLKATDLKMLIDRTQFAISTEETRYYLNGIFVHTVENKGELKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
+ IIIPRKTV LQ+LL+ + V ++S+ +I++ +I + SKLI
Sbjct: 184 RADIEAPAGSEGMPGIIIPRKTVSELQKLLDTPDVVVTAEVSDAKIRLTIGSIVMTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ +++ R+S IS+++ + V+L + + +TV++
Sbjct: 244 DGTFPDYQRVIPAGNDKELRVDCQSFAQAVDRVSTISSERGRAVKLALTDGQMTLTVNNP 303
Query: 302 NREKA 306
+ A
Sbjct: 304 DSGSA 308
>gi|425743310|ref|ZP_18861398.1| DNA polymerase III, beta subunit [Acinetobacter baumannii WC-323]
gi|425494465|gb|EKU60667.1| DNA polymerase III, beta subunit [Acinetobacter baumannii WC-323]
Length = 382
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 169/312 (54%), Gaps = 14/312 (4%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN--S 66
K ++L+ L V+ VE+++ L ILSN+ + + ++ +D EV++ T + G
Sbjct: 7 KESLLNVLSHVVGAVERRHTLNILSNVKIQTTQQALTITGSDLEVELVASTTLAEGACLE 66
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
+ V ARK ++I +SLP + + I E++ +KSG S+F L TL A +YP++T +
Sbjct: 67 AGETTVPARKLVEICKSLPTAALIDLQITEDQRCILKSGNSRFVLGTLPADDYPLLTTEN 126
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
+ ++Q+ LK + F++A QD+R+YL G LL + + V++DGHRL +V
Sbjct: 127 SQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDQNQLRTVTTDGHRLALCEV 186
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFS-----------NI 234
++ I+PRK V LQRLL ++ + L I + + + +
Sbjct: 187 LASSTAAAPIQAIVPRKAVGELQRLLSIEDEKLTLLIGRELLNVTINTPSRDKEQGDITV 246
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+KLIDGKF DY+ VI +K + + +SLQR++I+SN+KL+GV L + L
Sbjct: 247 RFTTKLIDGKFPDYRRVIPKGGDKHVFIAHDVFKQSLQRVAILSNEKLRGVFLNFNQDSL 306
Query: 295 KITVSSSNREKA 306
++ ++ +++A
Sbjct: 307 QLRANNPEQDEA 318
>gi|144900239|emb|CAM77103.1| DNA polymerase III subunit beta [Magnetospirillum gryphiswaldense
MSR-1]
Length = 372
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/318 (31%), Positives = 180/318 (56%), Gaps = 12/318 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L + E+ +L L V S+VE++N +PILSN+ + +S +TD ++ I TA
Sbjct: 1 MKLTI--ERAQLLKSLAHVQSVVERRNTIPILSNVKLEGRPGSLSLNATDMDLDIIE-TA 57
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIY--IENKHMFIKSGKSKFTLQTLDAKEY 118
+ A F +I+R LP+ +V I + M ++SG+SKFTL L +++
Sbjct: 58 PADVSRPGATTAPAHTFYEIVRKLPDGSQVEIEHDADTGLMTLRSGRSKFTLSCLPVEDF 117
Query: 119 PIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVS 174
P+++ + F F L+ LK +++ F+I+ ++ RYYLNG+ L + + + AV+
Sbjct: 118 PVLS-GGELPFTFCLTAAELKALVDRTRFAISTEETRYYLNGIYLHAATTPGGEVLRAVA 176
Query: 175 SDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNI 234
+DGHRL +V + + + +IIPRKTV +++L++ E V + +S +++ F++
Sbjct: 177 TDGHRLARVEVTLPEGAAGMPGVIIPRKTVQEMRKLIDETEGEVTVSLSETKLRFAFADA 236
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+ SKLIDG F DY+ VI +K V+ +++ R+S IS +K + ++L ++
Sbjct: 237 VLTSKLIDGTFPDYERVIPADNDKQLDVDVKSFAQAVDRVSAISTEKSRAIKLSLEKG-- 294
Query: 295 KITVSSSNREKASSTDLI 312
+T+S+S+ E S+T+ I
Sbjct: 295 TVTLSASSPENGSATEEI 312
>gi|304319870|ref|YP_003853513.1| DNA polymerase III subunit beta [Parvularcula bermudensis HTCC2503]
gi|303298773|gb|ADM08372.1| DNA polymerase III subunit beta [Parvularcula bermudensis HTCC2503]
Length = 373
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 173/317 (54%), Gaps = 13/317 (4%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ+ + E+ +L L S+VE++N +PILSN+L+ ++ +TD +++I
Sbjct: 1 MQVTI--ERATLLKALHHTQSVVERRNTIPILSNVLMRAQGGSLALTATDLDIEIAETVP 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTI--YIENKHMFIKSGKSKFTLQTLDAKEY 118
+ +A DI++ LP+ ++++ + + +KSG+S+F L L ++
Sbjct: 59 AEIAEEG-GVTASAVTLYDIVKRLPDGGQISLNKSSGSSRLMLKSGRSEFQLSILPDDDF 117
Query: 119 PIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL-----SFQKKNIIAV 173
P ++ + FT+S L +L+ F+++Q++ RYYLNG+ L ++ AV
Sbjct: 118 PTLS-DEAAGATFTISADALGRLLDRTRFAMSQEETRYYLNGVYLHALTEGEGAPSLRAV 176
Query: 174 SSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSN 233
++DGHRL + + +IIPRK V L+RLL++ + V + ++ +I+ F +
Sbjct: 177 ATDGHRLARLDSPLPPGAEAIPGVIIPRKAVLELRRLLDDADGDVAVTVTPAKIRFAFGD 236
Query: 234 IEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNY 293
I ++SKLIDG F DY+ VI + ++ V+ + R++ R+S +S DK + V+L + +
Sbjct: 237 IVLVSKLIDGTFPDYQRVIPSGNDRVMKVDNDAFRRAVDRVSTVSADKTRSVKLSLTEDQ 296
Query: 294 LKITVSSSNREKASSTD 310
L + V +N E S+TD
Sbjct: 297 LTLLV--NNPETGSATD 311
>gi|408376938|ref|ZP_11174541.1| DNA polymerase III subunit beta [Agrobacterium albertimagni AOL15]
gi|407748897|gb|EKF60410.1| DNA polymerase III subunit beta [Agrobacterium albertimagni AOL15]
Length = 372
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 172/309 (55%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ ++ +TD +++IT T +
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNVLLKAEGAELDMKATDLDLEITEGTPAMVEQAG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A +I+R LP+ +V + + M + SG+SKF+LQ L ++P +T +
Sbjct: 66 ATT-VPAHLLYEIVRKLPDGSEVLLATNPDGGTMTVASGRSKFSLQCLPQSDFPDLTAGT 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGHRLT 181
+ F + K +++ F+I+ ++ RYYLNG+ L + + AV++DGHRL
Sbjct: 125 -FTHSFKMKASDFKMLIDRTQFAISTEETRYYLNGIFLHTIEAGGALKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V+ IIIPRKTV LQ+L++N + + ++IS+++I++ ++ + SKLI
Sbjct: 184 RADVDAPSGSEGMPGIIIPRKTVGELQKLIDNPDLTIGIEISDSKIRLSIGSVVLTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ R++ R+S IS+++ + V+L + L +TV +
Sbjct: 244 DGTFPDYQRVIPQANDKEMRVDCQTFARAVDRVSTISSERGRAVKLALADGQLMLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|170748657|ref|YP_001754917.1| DNA polymerase III subunit beta [Methylobacterium radiotolerans JCM
2831]
gi|170655179|gb|ACB24234.1| DNA polymerase III, beta subunit [Methylobacterium radiotolerans
JCM 2831]
Length = 373
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 174/313 (55%), Gaps = 11/313 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ A+L L V +VE++N +PILSN+L+ + +TD ++++T
Sbjct: 3 VTVERAALLRSLGHVHRVVERRNTIPILSNVLLRAEGSGLQLRATDLDIEVTESVPADVA 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
++ V A DI+R LP+ +V++ E+ M I+SG+S+F L L ++P +
Sbjct: 63 DAGATT-VPAHVIYDIVRKLPDGAQVSLETGGESGQMTIRSGRSRFALGALPEGDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL-SFQKKN---IIAVSSDGH 178
+ F ++ LK ++ F+I+ ++ RYYLNG+ L + + +N + AV++DGH
Sbjct: 122 AG-EMPHGFEIAAADLKRLIEKTQFAISTEETRYYLNGIYLHTLETENGPAMRAVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSN-IEII 237
RL ++ + +I+PRK V +Q+LL++ V + +S +I++ F+ + +I
Sbjct: 181 RLARVEIPAPQGSVGMPGVIVPRKAVAEIQKLLDDGGETVAVDLSPAKIRLRFAGGLTLI 240
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKLIDG F DY+ VI +K V R+ +++ R+S IS+++ + V+L + L ++
Sbjct: 241 SKLIDGTFPDYQRVIPANNDKRLTVERDAFAKAVDRVSTISSERGRAVKLGLAEGRLALS 300
Query: 298 VSSSNREKASSTD 310
V +N + S+T+
Sbjct: 301 V--NNPDSGSATE 311
>gi|418938117|ref|ZP_13491679.1| DNA polymerase III, beta subunit [Rhizobium sp. PDO1-076]
gi|375055118|gb|EHS51391.1| DNA polymerase III, beta subunit [Rhizobium sp. PDO1-076]
Length = 379
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/309 (31%), Positives = 171/309 (55%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + +TD +++IT T +
Sbjct: 13 ERSNLLKSLNHVHRVVERRNTIPILSNVLLKAEGAALDMKATDLDLEITEGTPAMVEQAG 72
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A DI+R LP+ +V + + M + SG+SKF+LQ L ++P +T S
Sbjct: 73 ATT-VPAHLLYDIVRKLPDGSEVLLATNPDGSTMTVASGRSKFSLQCLPQSDFPDLTAGS 131
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGHRLT 181
+ F + K +++ F+I+ ++ RYYLNG+ L + + AV++DGHRL
Sbjct: 132 -FSHSFKIKASDFKMLIDRTQFAISTEETRYYLNGIFLHTIEAGGALKLRAVATDGHRLA 190
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V+ IIIPRKTV LQ+L++N + + ++IS+++I++ +I + SKLI
Sbjct: 191 RADVDAPSGSEGMPGIIIPRKTVGELQKLMDNPDLIIAIEISDSKIRLTIGSIVLTSKLI 250
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K ++ +++ R+S IS+++ + V+L + L +TV +
Sbjct: 251 DGTFPDYQRVIPTANDKEMRIDCQSFAQAVDRVSTISSERGRAVKLALSDGQLLLTV--N 308
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 309 NPDSGSATE 317
>gi|378828490|ref|YP_005191222.1| DNA polymerase III subunit beta [Sinorhizobium fredii HH103]
gi|365181542|emb|CCE98397.1| DNA polymerase III beta subunit [Sinorhizobium fredii HH103]
Length = 372
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 172/309 (55%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + +TD +++IT T +
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNVLLRSDGASLEMKATDLDLEITEATPAQVEQAG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A DI+R LP+ +V + E M + SG+SKF+LQ L ++P +T S
Sbjct: 66 ATT-VPAHLLYDIVRKLPDGSEVLLATNAEGTAMTVASGRSKFSLQCLPQSDFPDLTAGS 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL-SFQKKN---IIAVSSDGHRLT 181
+ F + LK +++ F+I+ ++ RYYLNG+ + + + K + AV++DGHRL
Sbjct: 125 -FSHSFRVKATDLKMLIDRTQFAISTEETRYYLNGIFVHTVENKGELKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
+ IIIPRKTV LQ+LL+ + V +++S+ +I++ +I + SKLI
Sbjct: 184 RADIEAPAGSEGMPGIIIPRKTVSELQKLLDTPDVIVTVEVSDAKIRLTIGSIVMTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ +++ R+S IS+++ + V+L + + +TV +
Sbjct: 244 DGTFPDYQRVIPAGNDKELRVDCQSFAQAVDRVSTISSERGRAVKLALADGQMTLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|452962528|gb|EME67657.1| DNA polymerase III subunit beta [Magnetospirillum sp. SO-1]
Length = 372
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 175/318 (55%), Gaps = 12/318 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L + E+ A+L L V S+VE++ +PILSN+ + S ++S +TD ++ I
Sbjct: 1 MKLTI--ERAALLKSLAHVQSVVERRTTIPILSNVKLEGRSGQLSLNATDMDLDIIEAVP 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIY--IENKHMFIKSGKSKFTLQTLDAKEY 118
A F +I+R LP+ +V I E+ + ++SG+SKF+L L +++
Sbjct: 59 ADVVRPGATT-APAHTFYEIVRKLPDGSQVEIEHDAESGQLTLRSGRSKFSLACLPVEDF 117
Query: 119 PIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNII----AVS 174
P+++ F F LS LK +++ F+I+ ++ RYYLNG+ L + + AV+
Sbjct: 118 PVLS-GGDLPFSFALSAAELKTLIDRTRFAISTEETRYYLNGIYLHAAASDGVDVLRAVA 176
Query: 175 SDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNI 234
+DGHRL ++ + + II+PRKTV +++L++ + + + +S ++K F +
Sbjct: 177 TDGHRLARVEITLPDGAAGMPGIIVPRKTVAEIRKLIDETDGEITVSLSETKLKFAFGDA 236
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+ SKLIDG F DY+ VI +K +V+ +++ R+S IS +K + ++L ++
Sbjct: 237 VLTSKLIDGTFPDYERVIPADNDKVLVVDCKSFAQAVDRVSAISTEKSRAIKLALEKG-- 294
Query: 295 KITVSSSNREKASSTDLI 312
T+S+S+ E S+ + I
Sbjct: 295 TATLSASSAENGSAVEEI 312
>gi|334141613|ref|YP_004534819.1| DNA polymerase III subunit beta [Novosphingobium sp. PP1Y]
gi|359397516|ref|ZP_09190543.1| DNA polymerase III subunit beta [Novosphingobium pentaromativorans
US6-1]
gi|333939643|emb|CCA93001.1| DNA polymerase III subunit beta [Novosphingobium sp. PP1Y]
gi|357601025|gb|EHJ62717.1| DNA polymerase III subunit beta [Novosphingobium pentaromativorans
US6-1]
Length = 372
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 167/305 (54%), Gaps = 6/305 (1%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILV-CKNSEKISFLSTDTEVQITTYTAVGYGNS 66
E++ +L L V S+VE++N +PILSN+L+ + ++TD ++Q+ + ++
Sbjct: 6 ERSTLLRCLSHVQSVVERRNTIPILSNVLIEAAAGGSLRIMATDLDIQVVENLSAVSVDT 65
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSK 126
++ V+A DI R LPE +V++ + M +K+G+S+F L TL ++P++ +
Sbjct: 66 PGSVTVSAHLLFDIARKLPEGSQVSLDAADNRMVVKAGRSRFQLPTLPRDDFPVIA-EGE 124
Query: 127 YDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVN 186
F + TL +++ F+I+ ++ RYYLNG+ L + + A ++DGHRL + +
Sbjct: 125 LPTSFEIPAATLAQMIDRTRFAISTEETRYYLNGIFLHVSDEELKAAATDGHRLARFTIK 184
Query: 187 IDKKFSSCSDIIIPRKTVFTLQRLLENK-ENPVELKISNNQIKIIFS---NIEIISKLID 242
D+I+PRK V L++LLE + V + +S ++I+ + + SKLID
Sbjct: 185 RPDGAEGMPDVIVPRKCVAELRKLLEEALDTNVLIDLSASKIRFTLGGENGVVLTSKLID 244
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSN 302
G F DY VI +K V+ + R++ I+ +K + V++ ++P+ + ++V+S +
Sbjct: 245 GTFPDYTRVIPTGNDKLLRVDPRSFFEGVDRVATIATEKTRAVKMALEPDRVTLSVTSPD 304
Query: 303 REKAS 307
A+
Sbjct: 305 NGTAA 309
>gi|218528085|ref|YP_002418901.1| DNA polymerase III subunit beta [Methylobacterium extorquens CM4]
gi|240136785|ref|YP_002961252.1| DNA polymerase III, beta-subunit [Methylobacterium extorquens AM1]
gi|254558655|ref|YP_003065750.1| DNA polymerase III, beta-subunit [Methylobacterium extorquens DM4]
gi|418058707|ref|ZP_12696675.1| DNA polymerase III, beta subunit [Methylobacterium extorquens DSM
13060]
gi|218520388|gb|ACK80973.1| DNA polymerase III, beta subunit [Methylobacterium extorquens CM4]
gi|240006749|gb|ACS37975.1| DNA polymerase III, beta-subunit [Methylobacterium extorquens AM1]
gi|254265933|emb|CAX21682.1| DNA polymerase III, beta-subunit [Methylobacterium extorquens DM4]
gi|373567768|gb|EHP93729.1| DNA polymerase III, beta subunit [Methylobacterium extorquens DSM
13060]
Length = 373
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 172/313 (54%), Gaps = 11/313 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ A+L L V +VE++N +PILSN+L+ + +TD ++++T A
Sbjct: 3 VTVERAALLKSLGHVHRVVERRNTIPILSNVLLRTGENGLQLKATDLDIEVTETVAADVL 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
++ V A DI+R LPE +V++ E M I+SG+S+F L L ++P +
Sbjct: 63 DAGATT-VPAHVIYDIVRKLPEGAQVSLETSGETGQMTIRSGRSRFALGALPEGDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL-SFQKKNII---AVSSDGH 178
+ F + LK ++ F+I+ ++ RYYLNG+ + + + + AV++DGH
Sbjct: 122 AG-ELPHSFAIPAAELKQLIEKTQFAISTEETRYYLNGIYFHTLEVEGALKLRAVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSN-IEII 237
RL + + II+PRK V +Q+L+++ V++++S +I++ F+ + +I
Sbjct: 181 RLARVETEAPEGSRGMPGIIVPRKAVAEIQKLVDDGGESVQVELSPAKIRLTFAGGVILI 240
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKLIDG F DY+ VI +K V R+ +++ R+S IS+++ + V+L + L ++
Sbjct: 241 SKLIDGTFPDYQRVIPTGNDKRLTVERDAFAKAVDRVSTISSERGRAVKLAVSEGRLALS 300
Query: 298 VSSSNREKASSTD 310
V +N + S+T+
Sbjct: 301 V--TNPDAGSATE 311
>gi|90421530|ref|YP_529900.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris BisB18]
gi|90103544|gb|ABD85581.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris
BisB18]
Length = 372
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/316 (30%), Positives = 180/316 (56%), Gaps = 18/316 (5%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQIT----TYTA 60
V E+ +L L V +VE++N +PIL N+L+ ++S +TD ++++T TA
Sbjct: 3 VTVERAQLLKSLGHVHRVVERRNTIPILGNVLLRAEKGRLSLKATDLDLEVTETLPAETA 62
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEY 118
G G+++ V A F DI+R LP+ ++ + + + + I++G+S+FTLQTL ++
Sbjct: 63 TG-GSTT----VPAHMFYDIVRKLPDGSQIVLESDGERAVLAIRAGRSRFTLQTLPENDF 117
Query: 119 PIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVS 174
P + + FTL+ +K +++ F+I+ ++ RYYLNG+ L + + AV+
Sbjct: 118 PDLAAG-EMTHSFTLTAADVKRLIDRTQFAISTEETRYYLNGIYLHGAGTAAAATLRAVA 176
Query: 175 SDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNI 234
+DGHRL + + + +I+PRKTV +QRL+E+ E V +++S +I+ ++
Sbjct: 177 TDGHRLAQVDLPLPSGAAGMPGVIVPRKTVGEVQRLIEDTEAAVGIELSVGKIRFTLGDV 236
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+ SKLIDG F DY VI +K +V++ ++ R+S IS+++ + V+L +
Sbjct: 237 VLTSKLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAG-- 294
Query: 295 KITVSSSNREKASSTD 310
K+ +S +N + S+T+
Sbjct: 295 KLVLSVTNPDSGSATE 310
>gi|218673040|ref|ZP_03522709.1| DNA polymerase III subunit beta [Rhizobium etli GR56]
Length = 361
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 169/301 (56%), Gaps = 10/301 (3%)
Query: 16 LQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAAR 75
L V +VE++N +PILSN+L+ + + + +TD +++IT T + V A
Sbjct: 3 LNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPASVEQAGATT-VPAH 61
Query: 76 KFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTL 133
DI+R L + +V + + M ++SG+SKF+LQ L ++P +T + + F L
Sbjct: 62 LLYDIVRKLSDGSEVLLATSPDGGSMTVQSGRSKFSLQCLPESDFPDLTAGT-FTHSFKL 120
Query: 134 SQKTLKCILNMVYFSIAQQDIRYYLNGLLL-SFQKKN---IIAVSSDGHRLTYYQVNIDK 189
LK +++ F+I+ ++ RYYLNG+ + + K + AV++DGHRL V+
Sbjct: 121 KASDLKMLIDRTQFAISTEETRYYLNGIFFHTIESKGELKLRAVATDGHRLARADVDAPS 180
Query: 190 KFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYK 249
IIIPRKTV LQ+L++N E V +++S+ +I++ +I + SKLIDG F DY+
Sbjct: 181 GSEGMPGIIIPRKTVGELQKLVDNPEAIVTVEVSDAKIRMTIGSIVLTSKLIDGTFPDYQ 240
Query: 250 YVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASST 309
VI +K V+ +++ R+S IS+++ + V+L + L +TV +N + S+T
Sbjct: 241 RVIPTGNDKEMRVDCTSFAQAVDRVSTISSERGRAVKLALSEGQLMLTV--NNPDSGSAT 298
Query: 310 D 310
+
Sbjct: 299 E 299
>gi|402772538|ref|YP_006592075.1| DNA polymerase III subunit beta [Methylocystis sp. SC2]
gi|401774558|emb|CCJ07424.1| DNA polymerase III, beta subunit [Methylocystis sp. SC2]
Length = 379
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 173/308 (56%), Gaps = 8/308 (2%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ A+L L V +VE++ +PIL+N+L+ ++ +TD +++IT T
Sbjct: 10 VTIERAALLRALGHVHRVVERRTTIPILANVLLSAKDGALTLKATDLDLEITERTTAEVS 69
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ A DI+R LPE +V++ + + ++SG+S+F L +L ++P +T
Sbjct: 70 QPGATTL-PAHTLYDIVRKLPEGAQVSLEATGDAGQLTLRSGRSRFNLSSLPESDFPDVT 128
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGL---LLSFQKKNII-AVSSDGH 178
+ + +F L+ LK ++ F+I+ ++ RYYLNG+ L + + ++ AV++DGH
Sbjct: 129 -SGDFSHKFALAPADLKRLIEKTQFAISSEETRYYLNGIYLHTLDVEGRPMLRAVATDGH 187
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL ++ + + +I+PRK V +QRL+E+ + V +++S N+++ F + + +
Sbjct: 188 RLARLELPAPQGSAGMPGVILPRKAVTEVQRLIEDAQGEVSVELSINKMRFTFGDALLTT 247
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY VI +K V R+ +++ R+S IS+++ + V+L + L ++V
Sbjct: 248 KLIDGTFPDYGRVIPAGNDKRLTVERDVFAKAVDRVSTISSERGRAVKLSLSEGKLVLSV 307
Query: 299 SSSNREKA 306
++ ++ A
Sbjct: 308 TNPDQGSA 315
>gi|163757766|ref|ZP_02164855.1| DNA polymerase III subunit beta [Hoeflea phototrophica DFL-43]
gi|162285268|gb|EDQ35550.1| DNA polymerase III subunit beta [Hoeflea phototrophica DFL-43]
Length = 372
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 173/312 (55%), Gaps = 10/312 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E++ +L L V +VE++N +PILSN+L+ + +TD +++IT T
Sbjct: 3 VTLERSNLLKSLNHVHRVVERRNTIPILSNVLLKAEGATLDMKATDLDLEITEATPAMIE 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ + V A DI+R L + +V + + M + SG+SKFTLQ L ++P +T
Sbjct: 63 QAG-STTVPAHLLYDIVRKLSDGSEVMLATNPDGASMTVASGRSKFTLQCLPESDFPDLT 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL-SFQKKNII---AVSSDGH 178
+ + F L LK +++ F+I+ ++ RYYLNG+ + + + + + AV++DGH
Sbjct: 122 AGA-FSHTFRLPATELKMLIDRTQFAISTEETRYYLNGIFVHTIESEGALKLRAVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL V+ IIIPRKTV +Q+L++N + V +++S+ +I+ ++ + S
Sbjct: 181 RLARADVDAPSGSEGMPGIIIPRKTVGEIQKLVDNPDLTVTVEVSDAKIRFTIGSVVMTS 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY+ VI +K V+ +++ R+S IS+++ + V+L I L +TV
Sbjct: 241 KLIDGTFPDYQRVIPTGNDKELTVDCQTFAQAVDRVSTISSERGRAVKLAIADGQLTLTV 300
Query: 299 SSSNREKASSTD 310
+N + S+T+
Sbjct: 301 --NNPDSGSATE 310
>gi|399042079|ref|ZP_10736934.1| DNA polymerase III, beta subunit [Rhizobium sp. CF122]
gi|398059461|gb|EJL51313.1| DNA polymerase III, beta subunit [Rhizobium sp. CF122]
Length = 372
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 173/309 (55%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSNIL+ + + +TD ++++T T +
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNILLRAEGQNLDMKATDLDLEVTEATPANVEQAG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A DI+R LP+ +V + + M ++SG+SKF+LQ L ++P +T +
Sbjct: 66 ATT-VPAHLLYDIVRKLPDGSEVLLATSTDGGSMTVQSGRSKFSLQCLPESDFPDLTAGT 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL-SFQKKNII---AVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ + + K + AV++DGHRL
Sbjct: 125 -FSHTFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESKGDLKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
VN IIIPRKTV LQ+L++ + V +++S+ ++++ +I + SKLI
Sbjct: 184 RADVNAPSGSEGMPGIIIPRKTVGELQKLVDVPDAIVTVEVSDAKLRLSIGSIVMTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ +++ R+S IS+++ + V+L + L +TV +
Sbjct: 244 DGTFPDYQRVIPTNNDKEMRVDCTTFAQAVDRVSTISSERGRAVKLALSDGQLLLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|399154445|ref|ZP_10754512.1| DNA polymerase III subunit beta [gamma proteobacterium SCGC
AAA007-O20]
Length = 367
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 166/298 (55%), Gaps = 4/298 (1%)
Query: 12 ILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINII 71
++ PLQ VI +VEKK LPILS++L+ + ++ +TD E++I+ + + ++
Sbjct: 10 LIDPLQTVIGVVEKKQSLPILSHVLIQLKDQTLTLTTTDMELEISASSKIK-NTEEVSFT 68
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
+ A+ IDI R LPE ++ IE K +++ + + F L T + ++P +
Sbjct: 69 IYAKDLIDIARKLPEKTQIKFKIEEKKIYLNANNNTFELNTFNHLDFPALPKTQDTSV-I 127
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+ Q LK ++ FS+ QDIR YLNGL + V++DGHRL+ ++ + K
Sbjct: 128 KIKQDDLKNLIENTSFSMGNQDIRAYLNGLFFELTNDTVTVVATDGHRLSIGEIKQNNKL 187
Query: 192 SSCSDIIIPRKTVFTLQRLL-ENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKY 250
+I+PRK V L +LL ++ + E+ +S+N ++ SN +IIS+LIDG F +YK
Sbjct: 188 DEKKTVILPRKAVIELTKLLNKSSQKMAEIHLSDNYFSLVDSNTKIISRLIDGSFPNYKQ 247
Query: 251 VISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASS 308
V+ + + ++NR L SLQ+ SI ++ KGV+LV + + L I S S R +A +
Sbjct: 248 VMPTDFTNTVVINRMDFLSSLQQASIFVEERTKGVKLVFRDDKLSI-FSHSERGRAET 304
>gi|427427489|ref|ZP_18917533.1| DNA polymerase III beta subunit [Caenispirillum salinarum AK4]
gi|425883415|gb|EKV32091.1| DNA polymerase III beta subunit [Caenispirillum salinarum AK4]
Length = 372
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 178/316 (56%), Gaps = 12/316 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L + E++ +L L V S+VE++N +PILSN+ + + + +TD +++I TA
Sbjct: 1 MKLTI--ERSVLLKSLGHVQSVVERRNTIPILSNVKLDATPDGLKLNATDMDLEIVE-TA 57
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKV--TIYIENKHMFIKSGKSKFTLQTLDAKEY 118
+ A DI+R LP+ ++ T E+ + ++SG+S+F+L L +++
Sbjct: 58 EAQVQDAGATTAPAHTLHDIVRKLPDGSQIELTYNAEDSQLALRSGRSRFSLSCLPVEDF 117
Query: 119 PIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNII----AVS 174
P M + ++ F +S L+ +++ F+I+ ++ R+YLNG+ L K + + AV+
Sbjct: 118 PAM-VGGEFSHNFAVSAGDLRALIDRTRFAISTEETRFYLNGIYLHATKSDGVDVLRAVA 176
Query: 175 SDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNI 234
+DGHRL ++V + + +I+PRKTV L++L++ V + +S +++ F
Sbjct: 177 TDGHRLARFEVPLPEGAGGMPGVIVPRKTVGELRKLIDETGMDVSISLSETKVRFGFDEA 236
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+ SKLIDG F DY+ VI + +K V+R + ++ R+S IS +K + +++ ++
Sbjct: 237 TLTSKLIDGTFPDYERVIPTENDKVMEVDRKLIADAVDRVSAISTEKSRAIKIALEKGV- 295
Query: 295 KITVSSSNREKASSTD 310
+T+S+S+ E S+ +
Sbjct: 296 -VTLSASSPEAGSAVE 310
>gi|423714855|ref|ZP_17689079.1| DNA polymerase III, beta subunit [Bartonella elizabethae F9251]
gi|395431074|gb|EJF97102.1| DNA polymerase III, beta subunit [Bartonella elizabethae F9251]
Length = 373
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 166/309 (53%), Gaps = 9/309 (2%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
+ ++N L L V +VE++N +PILSN+L+ + + +TD ++++T AV
Sbjct: 3 ITVDRNQFLKSLGRVHRVVERRNTVPILSNVLIDAENGHVQLKTTDLDLEVTESFAVNVE 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH---MFIKSGKSKFTLQTLDAKEYPIM 121
+ V A DI+R LP+ +V + ++ M + SG + F LQ L ++P
Sbjct: 63 QAGATT-VPAHLLYDIIRKLPDGNEVALSVDENQSSTMSVVSGCAHFQLQCLPKADFP-E 120
Query: 122 TLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIA---VSSDGH 178
+L ++ + F+LS LK +LN F+I+ ++ RYYLNG+ ++ V++DGH
Sbjct: 121 SLPGQFSYRFSLSASGLKHLLNCTQFAISTEETRYYLNGIYFHVIHDGVLKLRLVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLL-ENKENPVELKISNNQIKIIFSNIEII 237
RL ++ +I+PRK V LQ+LL E + V +++S +I+ ++
Sbjct: 181 RLAQVEMEAPSGVEGMPGVIVPRKAVGELQKLLSEENDGDVCIELSETKIRFSIGSVVFT 240
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKLIDG F DY+ VI +K +VNR ++ R+S IS+D+ + V+L I+ L++
Sbjct: 241 SKLIDGTFPDYQRVIPLGNDKELVVNRQDFSSAVDRVSTISSDRGRAVKLTIEHGQLRLV 300
Query: 298 VSSSNREKA 306
V+S + A
Sbjct: 301 VNSPDSGSA 309
>gi|23014790|ref|ZP_00054590.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog)
[Magnetospirillum magnetotacticum MS-1]
Length = 372
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 174/318 (54%), Gaps = 12/318 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L + E+ A+L L V S+VE++ +PILSN+ + +S +TD ++ I
Sbjct: 1 MKLTI--ERAALLKSLAHVQSVVERRTTIPILSNVKLEGRGGLLSLNATDMDLDIIEAVP 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEY 118
A F +I+R LP+ +V I E+ + ++SG+SKF+L L +++
Sbjct: 59 ADVVRPGATT-APAHTFYEIVRKLPDGSQVEIEFDAESGQLTLRSGRSKFSLACLPVEDF 117
Query: 119 PIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNII----AVS 174
P+++ F FTLS LK +++ F+I+ ++ RYYLNG+ L + I AV+
Sbjct: 118 PVLS-GGDLPFSFTLSAAELKTLIDRTRFAISTEETRYYLNGIYLHAAASDGIDVLRAVA 176
Query: 175 SDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNI 234
+DGHRL ++ + + +I+PRKTV +++L++ + + + +S ++K F +
Sbjct: 177 TDGHRLARVEITLPSGAAGMPGVIVPRKTVAEIRKLIDETDGEITVSLSETKLKFAFGDA 236
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+ SKLIDG F DY+ VI +K +V+ +++ R+S IS +K + ++L ++
Sbjct: 237 VLTSKLIDGTFPDYERVIPADNDKVLVVDCKSFAQAVDRVSAISTEKSRAIKLALEKG-- 294
Query: 295 KITVSSSNREKASSTDLI 312
T+S+S+ E S+ + I
Sbjct: 295 SATLSASSAENGSAVEEI 312
>gi|387885756|ref|YP_006316055.1| DNA-directed DNA polymerase [Francisella noatunensis subsp.
orientalis str. Toba 04]
gi|386870572|gb|AFJ42579.1| DNA-directed DNA polymerase [Francisella noatunensis subsp.
orientalis str. Toba 04]
Length = 367
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 104/307 (33%), Positives = 173/307 (56%), Gaps = 4/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M V+N ++ +L PLQ ++S+ K+ +P+LS IL N+ + ++D + +I+ A
Sbjct: 1 MNFVLN--RDDLLKPLQSMLSVANSKSTMPLLSCILFDINNNNLKITASDLDTEISCNIA 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
V N+++ + + A K +I+RSL + + I++ + I S S F L +L+A YP+
Sbjct: 59 VS-CNTNVKLALNADKIYNIVRSLNDNSMIDFRIDDNKVTIISNNSTFNLISLNADNYPL 117
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ N F +SQ+ I++ V FS+A D RY+LNG+ + AVS+DGHR+
Sbjct: 118 IDSNINEQASFDISQQDFHHIISKVDFSMANDDTRYFLNGMFWEINSNLLRAVSTDGHRM 177
Query: 181 TYYQVNIDKK-FSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
+ + ID K S S IIP+K + L++++ E +++ + N +K F N ISK
Sbjct: 178 SITESIIDSKVLDSDSQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAEFGNYAFISK 237
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG++ DY+ VI K V++ L SL R SI++NDK KGVRL I + ++ +
Sbjct: 238 LIDGRYPDYQKVIPKNNTKLLAVDKQVLKNSLLRTSILANDKYKGVRLNISQGQVLLSAN 297
Query: 300 SSNREKA 306
+ + EKA
Sbjct: 298 NPDNEKA 304
>gi|420242316|ref|ZP_14746377.1| DNA polymerase III, beta subunit [Rhizobium sp. CF080]
gi|398067971|gb|EJL59435.1| DNA polymerase III, beta subunit [Rhizobium sp. CF080]
Length = 372
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 97/309 (31%), Positives = 172/309 (55%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + +TD +++IT ++
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNVLMRASGAGLDLKATDLDLEITEALPAMV-ETA 64
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A +I+R LP+ +V + + M ++SG+SKF+LQ L ++P +T S
Sbjct: 65 GATTVPAHLLYEIVRKLPDGSEVLLATNPDGGSMTVQSGRSKFSLQCLPESDFPDLTAGS 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIAVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ + + + AV++DGHRL
Sbjct: 125 -FTHTFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIEADGDLKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V IIIPRKTV LQ+L+++ E V +++S+ +I++ ++ + SKLI
Sbjct: 184 RADVQAPSGSEGMPGIIIPRKTVGELQKLVDDPEAVVTVEVSDAKIRVTIGSVVMTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ R++ R+S IS+++ + V+L + L +TV +
Sbjct: 244 DGTFPDYQRVIPTGNDKEMRVDCQSFTRAVDRVSTISSERGRAVKLSLTDGQLMLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|374293484|ref|YP_005040519.1| DNA polymerase III, beta-subunit [Azospirillum lipoferum 4B]
gi|357425423|emb|CBS88310.1| DNA polymerase III, beta-subunit [Azospirillum lipoferum 4B]
Length = 376
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 176/316 (55%), Gaps = 14/316 (4%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
+ E+ A+L L V S+VE++N +PILSN+L+ ++S +TD +++I G
Sbjct: 3 ITIERAALLRSLGHVQSVVERRNTIPILSNVLLRAGDGELSLAATDMDLEIVETVPATVG 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPIMT 122
A DI+R LP+ +V + I + ++SG+S+F L L +++P ++
Sbjct: 63 RPG-GTTAPAHTLFDIVRKLPDGSQVELDIGGDGTILTLRSGRSQFKLSCLPVEDFPQLS 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL--------SFQKKNIIAVS 174
+ + F+++ L+ +++ F+I+ ++ RYYLNG+ L S + + AV+
Sbjct: 122 -SGELKHNFSVAAADLRGLIDRTRFAISTEETRYYLNGIYLHAAKSKMGSLETPVLRAVA 180
Query: 175 SDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNI 234
+DGHRL ++ + + +IIPRKTV +++L++ + +EL +S+N+I+ F ++
Sbjct: 181 TDGHRLARVEMPLPDGADAIPGVIIPRKTVTEIRKLVDEAADRIELSLSDNKIRFGFDSV 240
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+ SKLIDG F DY+ VI +K V+ ++ R++ IS +K + V+L + L
Sbjct: 241 VVTSKLIDGTFPDYERVIPVGNDKVMEVDAKLFAAAVDRVATISTEKSRAVKLSLVRGAL 300
Query: 295 KITVSSSNREKASSTD 310
T+S+++ E S+T+
Sbjct: 301 --TLSATSPESGSATE 314
>gi|337754019|ref|YP_004646530.1| DNA polymerase III subunit beta [Francisella sp. TX077308]
gi|336445624|gb|AEI34930.1| DNA polymerase III beta subunit [Francisella sp. TX077308]
Length = 367
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/307 (33%), Positives = 173/307 (56%), Gaps = 4/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M V+N ++ +L PLQ ++S+ K+ +P+LS IL ++ + ++D + +I+ A
Sbjct: 1 MNFVLN--RDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIA 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
V N++I + + A K +I+RSL + + I++ + I S S F L +L+A YP+
Sbjct: 59 VS-CNTNIKLALNADKIYNIVRSLNDNSMIDFRIDDNKVTIISNNSTFNLISLNADNYPL 117
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
+ N F LSQ+ I++ V FS+A D RY+LNG+ + AVS+DGHR+
Sbjct: 118 IDSNINEQASFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINSNLLRAVSTDGHRM 177
Query: 181 TYYQVNIDKK-FSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
+ + +D K S S IIP+K + L++++ E +++ + N +K F N ISK
Sbjct: 178 SITESIVDSKVLDSDSQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAEFGNYAFISK 237
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG++ DY+ VI K V++ L SL R SI++NDK KGVRL I + ++ +
Sbjct: 238 LIDGRYPDYQKVIPKNNTKLLAVDKQVLKNSLLRTSILANDKYKGVRLNISQGQVLLSAN 297
Query: 300 SSNREKA 306
+ + EKA
Sbjct: 298 NPDNEKA 304
>gi|114568556|ref|YP_755236.1| DNA polymerase III subunit beta [Maricaulis maris MCS10]
gi|114339018|gb|ABI64298.1| DNA polymerase III, beta subunit [Maricaulis maris MCS10]
Length = 372
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 168/312 (53%), Gaps = 10/312 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L + E+ +L L V ++VEK+N +PILSN+L+ + SF +TD +++I T
Sbjct: 1 MKLTI--ERATLLKALGHVQAVVEKRNTIPILSNVLISAGPDGASFAATDLDIEILETTD 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEY 118
+ + A DI R LP+ VT+ + + + +K+G+S F+L +L ++
Sbjct: 59 ASCDGEGL-VTAPAHTLYDITRKLPDGADVTLEMNGSDPRLTLKAGRSSFSLPSLPPGDF 117
Query: 119 PIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQ----KKNIIAVS 174
P+M + F + + L +++ F+I+ ++ RYYLNG+ L +K + AV+
Sbjct: 118 PVMP-TEDLEHRFQVPARELARLIDKTRFAISTEETRYYLNGIHLHAADQDGRKTLRAVA 176
Query: 175 SDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNI 234
+DG RL +V++ +I+PRKTV ++RLLE+ ++ VE+ +S +I+
Sbjct: 177 TDGVRLALAEVDLPDGADGMPGVIVPRKTVQEVKRLLEDADDDVEVSVSEGKIRFRLGRA 236
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+ SKLIDG F DY+ VI + V + ++ R++ IS +K + V+L + + L
Sbjct: 237 VLTSKLIDGAFPDYERVIPRGNTRLMSVENKRFAEAVDRVATISVEKSRSVKLSLGADAL 296
Query: 295 KITVSSSNREKA 306
+ V++ +A
Sbjct: 297 TLAVNNPESGQA 308
>gi|222084599|ref|YP_002543128.1| DNA polymerase III subunit beta [Agrobacterium radiobacter K84]
gi|398382148|ref|ZP_10540246.1| DNA polymerase III, beta subunit [Rhizobium sp. AP16]
gi|221722047|gb|ACM25203.1| DNA polymerase III, beta subunit [Agrobacterium radiobacter K84]
gi|397718016|gb|EJK78611.1| DNA polymerase III, beta subunit [Rhizobium sp. AP16]
Length = 372
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 169/309 (54%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + +TD +++IT T +
Sbjct: 6 ERSNLLKSLNHVHRVVERRNTIPILSNVLLKAEGANLDMKATDLDLEITEATPANVEQAG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A DI+R LP+ +V + + M + SG+SKF+LQ L ++P +T S
Sbjct: 66 ATT-VPAHLLYDIVRKLPDGSEVLLATNPDGGSMTVASGRSKFSLQCLPESDFPDLTAGS 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ S + AV++DGHRL
Sbjct: 125 -FSHSFKLKAADLKMLIDRTQFAISTEETRYYLNGIFFHTIESEGDLKLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V+ IIIPRKTV LQ+L+++ + V +++S+ +I+ +I + SKLI
Sbjct: 184 RADVSAPSGSEGMPGIIIPRKTVGELQKLVDSPDVIVTVEVSDAKIRTTIGSIVMTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ +++ R+S IS+++ + V+L + L +TV +
Sbjct: 244 DGTFPDYQRVIPTNNDKEMRVDCQSFAQAVDRVSTISSERGRAVKLALSDGQLLLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|358012770|ref|ZP_09144580.1| DNA polymerase III subunit beta [Acinetobacter sp. P8-3-8]
Length = 382
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 168/312 (53%), Gaps = 14/312 (4%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN--S 66
K ++L+ L V+ VE+++ L ILSN+ + ++ ++ +D EV++ T + G
Sbjct: 7 KESLLNVLSHVVGAVERRHTLNILSNVKIQATNQSLTITGSDLEVELVASTTLAEGACLQ 66
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
+ V ARK +DI +SLP + + I E++ +KSG S+F L TL A++YP++T +
Sbjct: 67 AGETTVPARKLVDICKSLPTAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYPLLTNEN 126
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
+ ++++ LK + F++A QD+R+YL G LL + AV++DGHRL +
Sbjct: 127 SQGTQVQVTERELKRLFEKTAFAMAVQDVRFYLTGTLLEIDANQLRAVTTDGHRLALCET 186
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFS-----------NI 234
+ I+PRK V LQRLL ++ + L I + + +
Sbjct: 187 LASSTTTQPVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTIQTQSKDKEQGDITV 246
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+KLIDGKF DY+ VI +K + + +SLQR++I+SN+KL+GV L + L
Sbjct: 247 RFTTKLIDGKFPDYRRVIPRGGDKVVTIPHDVFKQSLQRVAILSNEKLRGVFLNFNADTL 306
Query: 295 KITVSSSNREKA 306
++ ++ +++A
Sbjct: 307 QLRANNPEQDEA 318
>gi|23006928|ref|ZP_00049021.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog)
[Magnetospirillum magnetotacticum MS-1]
Length = 328
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 174/313 (55%), Gaps = 11/313 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ A+L L V +VE++N +PILSN+L+ + + +TD ++++T
Sbjct: 3 VTVERAALLRSLGHVHRVVERRNTIPILSNVLLRTGEDGLRLKATDLDIEVTETVPADVL 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
++ V A DI+R LPE +V++ + M I+SG+S+F L L ++P +
Sbjct: 63 DAGATT-VPAHVIYDIVRKLPEGAQVSLETSGDTGQMTIRSGRSRFALGALPEGDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIAVSSDGH 178
+ F+++ LK ++ F+I+ ++ RYYLNG+ L + + + AV++DGH
Sbjct: 122 AG-ELPHSFSIAAAELKLLIEKTQFAISTEETRYYLNGIYLHTVEVDGALKLRAVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSN-IEII 237
RL + + II+PRK V +Q+L+++ V++++S +I++ F+ + +I
Sbjct: 181 RLARVETAAPEGSRGMPGIIVPRKAVAEIQKLVDDGGESVQVELSPAKIRLTFAGGVTLI 240
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKLIDG F DY+ VI + +K V R+ +++ R+S IS+++ + V+L + ++
Sbjct: 241 SKLIDGTFPDYQRVIPSGNDKHLTVVRDAFAKAVDRVSTISSERGRAVKLAMADG--RVA 298
Query: 298 VSSSNREKASSTD 310
+S +N + S T+
Sbjct: 299 LSVTNPDAGSRTE 311
>gi|402819973|ref|ZP_10869540.1| hypothetical protein IMCC14465_07740 [alpha proteobacterium
IMCC14465]
gi|402510716|gb|EJW20978.1| hypothetical protein IMCC14465_07740 [alpha proteobacterium
IMCC14465]
Length = 372
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 101/312 (32%), Positives = 166/312 (53%), Gaps = 10/312 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ A+L L+ V S+VE++N +PILSN+++ + + +TD E++I G
Sbjct: 3 VTIEQGALLKALEHVQSVVERRNTIPILSNVVLEAQNGALLLTATDLEIEIKESIEAEVG 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENK--HMFIKSGKSKFTLQTLDAKEYPIMT 122
+ A DI+ LP +V + + + + SG S F LQ+L +++P +T
Sbjct: 63 ETGATT-APAHMLYDIVNKLPAGSQVNLSKDEAATQLSLNSGSSSFVLQSLPREDFPSLT 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIAVSSDGH 178
L F L L +++ F+I+ +D R+YLNG+ L +++ + AV++DGH
Sbjct: 122 LG-DMPHAFALPAGDLLRLIDKTRFAISNEDTRHYLNGIYLHIVEEDGTSMLRAVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL Q II+PRKTV LQ+LL+N V +++S +I N+ + S
Sbjct: 181 RLAQAQSPQPVGAQDMPAIIVPRKTVNELQKLLKNSSGEVSVQVSETKINFSHENMSLTS 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDGKF DY VI + +K V+ ++ + R+S +SN++ + V+L + + L TV
Sbjct: 241 KLIDGKFPDYNRVIPSNNDKRLSVDAKAFVQCVDRVSAVSNERSRAVKLSLATDSLTFTV 300
Query: 299 SSSNREKASSTD 310
SN E S+TD
Sbjct: 301 --SNPESGSATD 310
>gi|403051571|ref|ZP_10906055.1| DNA polymerase III subunit beta [Acinetobacter bereziniae LMG 1003]
gi|445415880|ref|ZP_21434311.1| DNA polymerase III, beta subunit [Acinetobacter sp. WC-743]
gi|444762680|gb|ELW87037.1| DNA polymerase III, beta subunit [Acinetobacter sp. WC-743]
Length = 382
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 168/312 (53%), Gaps = 14/312 (4%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN--S 66
K ++L+ L V+ VE+++ L ILSN+ + ++ ++ +D EV++ T + G
Sbjct: 7 KESLLNVLSHVVGAVERRHTLNILSNVKIQATNQALTITGSDLEVELVASTTLADGACLQ 66
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
+ V ARK +DI +SLP + + I E++ +KSG S+F L TL A++YP++T
Sbjct: 67 AGETTVPARKLVDICKSLPSAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYPLLTNEH 126
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
+ ++++ LK + F++A QD+R+YL G LL + + AV++DGHRL +
Sbjct: 127 SQGTQVQVTERELKRLFEKTSFAMAVQDVRFYLTGTLLEIDENQLRAVTTDGHRLALCET 186
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFS-----------NI 234
+ I+PRK V LQRLL ++ + L I + + +
Sbjct: 187 LASSTATQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTIQTPSRDKEQGDITV 246
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+KLIDGKF DY+ VI +K + + +SLQR++I+SN+KL+GV L + L
Sbjct: 247 RFTTKLIDGKFPDYRRVIPRGGDKVVHIPHDVFKQSLQRVAILSNEKLRGVFLNFNADSL 306
Query: 295 KITVSSSNREKA 306
++ ++ +++A
Sbjct: 307 QLRANNPEQDEA 318
>gi|393766987|ref|ZP_10355540.1| DNA polymerase III subunit beta [Methylobacterium sp. GXF4]
gi|392727767|gb|EIZ85079.1| DNA polymerase III subunit beta [Methylobacterium sp. GXF4]
Length = 373
Score = 166 bits (421), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 173/313 (55%), Gaps = 11/313 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ A+L L V +VE++N +PILSN+L+ + + +TD ++++T
Sbjct: 3 VTVERAALLRSLGHVHRVVERRNTIPILSNVLLRSDGSSLQLRATDLDIEVTESVPADVA 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ V A DI+R LP+ +V++ E+ M I+SG+S+F L L ++P +
Sbjct: 63 DPGATT-VPAHVIYDIVRKLPDGAQVSLETGGESGQMTIRSGRSRFALGALPEGDFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGL---LLSFQKKNII-AVSSDGH 178
+ F ++ LK +++ F+I+ ++ RYYLNG+ L + ++ AV++DGH
Sbjct: 122 AG-EMPHGFEVAAADLKRLIDKTQFAISTEETRYYLNGIYLHTLETESGPVMRAVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSN-IEII 237
RL ++ + +I+PRK V +Q+LL++ V + +S +I++ F+ + +I
Sbjct: 181 RLARVEIPAPQGSVGMPGVIVPRKAVAEIQKLLDDGGETVAVDLSPAKIRLRFAGGLTLI 240
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKLIDG F DY+ VI +K V R+ +++ R+S IS+++ + V+L + L ++
Sbjct: 241 SKLIDGTFPDYQRVIPANNDKRLTVERDAFAKAVDRVSTISSERGRAVKLGLTEGRLALS 300
Query: 298 VSSSNREKASSTD 310
V +N + S+T+
Sbjct: 301 V--NNPDSGSATE 311
>gi|114769643|ref|ZP_01447253.1| DNA polymerase III subunit beta [Rhodobacterales bacterium
HTCC2255]
gi|114549348|gb|EAU52230.1| DNA polymerase III subunit beta [alpha proteobacterium HTCC2255]
Length = 372
Score = 166 bits (421), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 181/310 (58%), Gaps = 12/310 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V+ E++A+L + S+VE++N +PIL+N+L+ +ISF +TD ++++ Y VG
Sbjct: 3 VSIERSALLKAMSQAQSVVERRNTIPILANVLIEAEGGEISFRATDLDIEVV-YKVVGMV 61
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIEN--KHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ V A +I+R LP+ V + + + + +G+S F+L TL +++PIM
Sbjct: 62 ERAGATTVGAHTLHEIVRKLPDGAMVELTDDATANRLDVVAGRSSFSLATLPREDFPIMA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL-SFQKKN---IIAVSSDGH 178
NS+Y F+ +TL+ + + F+I+ ++ RYYLNG+ + S +N + V++DGH
Sbjct: 122 -NSEYACNFSAQSETLRRLFDKSKFAISTEETRYYLNGVYMHSSDGENGRVLRCVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII- 237
RL + + + +I+PRKTV L++LL++ E +++ +S ++ KI FS EII
Sbjct: 181 RLARIDTQLPEGADTLPGVIVPRKTVGELRKLLDDDE--MKIAVSVSETKIRFSTPEIIL 238
Query: 238 -SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
SK+IDG F DY VI + V+ + +++ R+S +S+++ + V+L ++ + L +
Sbjct: 239 TSKVIDGSFPDYTRVIPQGNTRRLEVDAAEFAQAVDRVSTVSSERSRAVKLTLEDDRLVL 298
Query: 297 TVSSSNREKA 306
+V++ + A
Sbjct: 299 SVNAPDSGAA 308
>gi|170738369|ref|YP_001767024.1| DNA polymerase III subunit beta [Methylobacterium sp. 4-46]
gi|168192643|gb|ACA14590.1| DNA polymerase III, beta subunit [Methylobacterium sp. 4-46]
Length = 373
Score = 166 bits (421), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 172/313 (54%), Gaps = 11/313 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E+ A+L L V +VE++N +PILSN+L+ +++ + +TD ++++T
Sbjct: 3 VTVERAALLRSLGHVHRVVERRNTIPILSNVLLRSSADGLQLRATDLDIEVTETIPADVV 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ V A DI+R LP+ +V++ E M I+SG+S+F L L ++P +
Sbjct: 63 DGGATT-VPAHVIYDIVRKLPDGVQVSLETTGETGQMQIRSGRSRFMLGALPEADFPDLA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGH 178
+ F L LK +++ F+I+ ++ RYYLNG+ + + AV++DGH
Sbjct: 122 AG-ELPHRFQLQAAELKKLIDKTQFAISTEETRYYLNGIFFHTIETEAGLRLRAVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFS-NIEII 237
RL ++ + II+PRK V +Q+L+E+ + V +++S +++ FS + +I
Sbjct: 181 RLARVEMPAPEGSRGMPGIIVPRKAVAEIQKLVEDGGDSVGVELSPAKVRFTFSSGVTLI 240
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKLIDG F DY+ VI +K V R + +++ R+S IS+++ + V+L + L ++
Sbjct: 241 SKLIDGTFPDYQRVIPTGNDKLLTVEREQFAKAVDRVSTISSERGRAVKLAVGGGRLSLS 300
Query: 298 VSSSNREKASSTD 310
V +N + S+T+
Sbjct: 301 V--NNPDSGSATE 311
>gi|365858529|ref|ZP_09398455.1| DNA polymerase III, beta subunit [Acetobacteraceae bacterium
AT-5844]
gi|363713988|gb|EHL97542.1| DNA polymerase III, beta subunit [Acetobacteraceae bacterium
AT-5844]
Length = 375
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 171/307 (55%), Gaps = 7/307 (2%)
Query: 6 NTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN 65
+ ++ +L L V S+VE++N +PIL+N+++ + ++ +TD E+ I
Sbjct: 4 SVDRAVLLKALAHVQSVVERRNTIPILANVMLAAHEGALTLTATDMEIAIVEAVPGVTVT 63
Query: 66 SSINIIVAARKFIDILRSLPETEKVTI--YIENKHMFIKSGKSKFTLQTLDAKEYPIMTL 123
+ A +I+R LP+ KV + + + +++G+ +L L +++P MT
Sbjct: 64 RAGRTTAPAATLYEIVRKLPDGAKVELDHPGGDAPLALRAGRFATSLMVLPVEDFPSMT- 122
Query: 124 NSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGHR 179
K F L TL+ +++ F+I+ ++ RYYLNG+ + S +K + AV++DGHR
Sbjct: 123 EGKLPHSFELPAMTLRELVDRTKFAISTEETRYYLNGIYMHATESDGQKVLRAVATDGHR 182
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L + + + + +IIPRKTV +++L E +PVE+++S+ +I+ F ++ + SK
Sbjct: 183 LARVEEPLPEGAAGMPGVIIPRKTVNEIRKLAEESHDPVEIRLSDTKIRFAFGSVHLTSK 242
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG F +Y VI +K V++ ++ R++ IS+++ + V+L +K + L +T S
Sbjct: 243 LIDGTFPEYDRVIPRGNDKILTVDKKAFAEAVARVAAISSERSRPVKLSLKADSLTLTAS 302
Query: 300 SSNREKA 306
S ++ +A
Sbjct: 303 SPDQGQA 309
>gi|297184289|gb|ADI20406.1| DNA polymerase sliding clamp subunit (pcna homolog) [uncultured
alpha proteobacterium EB080_L43F08]
Length = 372
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 181/310 (58%), Gaps = 12/310 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V+ E++A+L + S+VE++N +PIL+N+L+ +ISF +TD ++++ Y VG
Sbjct: 3 VSIERSALLKAMSQAQSVVERRNTIPILANVLIEAEGGEISFRATDLDIEVV-YKVVGMV 61
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIEN--KHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ V A +I+R LP+ V + + + + +G+S F+L TL +++PIM
Sbjct: 62 ERAGATTVGAHTLHEIVRKLPDGAMVELTDDATANRLDVVAGRSSFSLATLPREDFPIMA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL-SFQKKN---IIAVSSDGH 178
NS+Y F+ +TL+ + + F+I+ ++ RYYLNG+ + S +N + V++DGH
Sbjct: 122 -NSEYACNFSAQSETLRRLFDKSKFAISTEETRYYLNGVYMHSSDGENGRVLRCVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII- 237
RL + + + +I+PRKTV L++LL++ E +++ +S ++ KI FS EII
Sbjct: 181 RLARIDTQLPEGADTLPGVIVPRKTVGELRKLLDDDE--MKIAVSVSETKIRFSTPEIIL 238
Query: 238 -SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
SK+IDG F DY VI + V+ + +++ R+S +S+++ + V+L ++ + L +
Sbjct: 239 TSKVIDGSFPDYTRVIPQGNTRRLEVDAAEFAQAVDRVSTVSSERSRAVKLTLEDDRLVL 298
Query: 297 TVSSSNREKA 306
+V++ + A
Sbjct: 299 SVNAPDSGAA 308
>gi|83309736|ref|YP_420000.1| DNA polymerase III subunit beta [Magnetospirillum magneticum AMB-1]
gi|82944577|dbj|BAE49441.1| DNA polymerase sliding clamp subunit [Magnetospirillum magneticum
AMB-1]
Length = 379
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 175/318 (55%), Gaps = 12/318 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L + E+ A+L L V S+VE++ +PILSN+ + +S +TD ++ I
Sbjct: 8 MKLTI--ERAALLKSLAHVQSVVERRTTIPILSNVKLEGRGGLLSLNATDMDLDIIEAVP 65
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIY--IENKHMFIKSGKSKFTLQTLDAKEY 118
A F +I+R LP+ +V I E+ + ++SG+SKF+L L +++
Sbjct: 66 ADVVRPGATT-APAHTFYEIVRKLPDGSQVEIEHDAESGQLTLRSGRSKFSLACLPVEDF 124
Query: 119 PIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNII----AVS 174
P+++ + F F+LS LK +++ F+I+ ++ RYYLNG+ L + + AV+
Sbjct: 125 PVLS-GGELPFTFSLSAAELKTLIDRTRFAISTEETRYYLNGIYLHAAASDGVDVLRAVA 183
Query: 175 SDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNI 234
+DGHRL ++ + + II+PRKTV +++L++ + + + +S ++K F +
Sbjct: 184 TDGHRLARVEITLPSGAAGMPGIIVPRKTVAEIRKLIDETDGEITVSLSETKLKFAFGDA 243
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+ SKLIDG F DY+ VI +K +V+ +++ R+S IS +K + ++L ++
Sbjct: 244 VLTSKLIDGTFPDYERVIPADNDKVLVVDCKSFAQAVDRVSAISTEKSRAIKLALEKG-- 301
Query: 295 KITVSSSNREKASSTDLI 312
T+S+S+ E S+ + I
Sbjct: 302 SATLSASSAENGSAVEEI 319
>gi|421588307|ref|ZP_16033608.1| DNA polymerase III subunit beta, partial [Rhizobium sp. Pop5]
gi|403707012|gb|EJZ22128.1| DNA polymerase III subunit beta, partial [Rhizobium sp. Pop5]
Length = 280
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 158/279 (56%), Gaps = 8/279 (2%)
Query: 16 LQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAAR 75
L V +VE++N +PILSN+L+ + + + +TD +++IT T + V A
Sbjct: 4 LNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPASVEQAGATT-VPAH 62
Query: 76 KFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTL 133
DI+R LP+ +V + + M ++SG+SKF+LQ L ++P +T + + F L
Sbjct: 63 LLYDIVRKLPDGSEVLLATSTDGGSMTVQSGRSKFSLQCLPESDFPDLTAGT-FTHSFKL 121
Query: 134 SQKTLKCILNMVYFSIAQQDIRYYLNGLLL-SFQKKNII---AVSSDGHRLTYYQVNIDK 189
LK +++ F+I+ ++ RYYLNG+ + + K + AV++DGHRL V+
Sbjct: 122 KATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESKGDLKLRAVATDGHRLARADVDAPA 181
Query: 190 KFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYK 249
IIIPRKTV LQ+L++N E V +++S+ +I++ +I + SKLIDG F DY+
Sbjct: 182 GSEGMPGIIIPRKTVGELQKLVDNPEAVVTVEVSDAKIRMTIGSIVLTSKLIDGTFPDYQ 241
Query: 250 YVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLV 288
VI +K V+ +++ R+S IS+++ + V+L
Sbjct: 242 RVIPTGNDKEMRVDCTTFAQAVDRVSTISSERGRAVKLA 280
>gi|395779007|ref|ZP_10459518.1| DNA polymerase III, beta subunit [Bartonella elizabethae Re6043vi]
gi|395417182|gb|EJF83534.1| DNA polymerase III, beta subunit [Bartonella elizabethae Re6043vi]
Length = 373
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 166/309 (53%), Gaps = 9/309 (2%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
+ ++N L L V +VE++N +PILSN+L+ + + +TD ++++T AV
Sbjct: 3 ITVDRNQFLKSLGRVHRVVERRNTVPILSNVLIDAENGHVQLKTTDLDLEVTESFAVNVE 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH---MFIKSGKSKFTLQTLDAKEYPIM 121
+ V A DI+R LP+ +V + ++ M + SG + F LQ L ++P
Sbjct: 63 QAGATT-VPAHLLYDIIRKLPDGNEVALSVDENQSSTMSVVSGCAHFQLQCLPKADFP-E 120
Query: 122 TLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIA---VSSDGH 178
+L ++ + F+LS +K +LN F+I+ ++ RYYLNG+ ++ V++DGH
Sbjct: 121 SLPGQFGYRFSLSASGVKHLLNCTQFAISTEETRYYLNGIYFHVIHDGVLKLRLVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLL-ENKENPVELKISNNQIKIIFSNIEII 237
RL ++ +I+PRK V LQ+LL E + V +++S +I+ ++
Sbjct: 181 RLAQVEMEAPSGVEGMPGVIVPRKAVGELQKLLSEENDGDVCIELSETKIRFSIGSVVFT 240
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKLIDG F DY+ VI +K +VNR ++ R+S IS+D+ + V+L I+ L++
Sbjct: 241 SKLIDGTFPDYQRVIPLGNDKELVVNRQDFSSAVDRVSTISSDRGRAVKLTIEHGQLRLV 300
Query: 298 VSSSNREKA 306
V+S + A
Sbjct: 301 VNSPDSGSA 309
>gi|332187226|ref|ZP_08388965.1| DNA polymerase III, beta subunit [Sphingomonas sp. S17]
gi|332012647|gb|EGI54713.1| DNA polymerase III, beta subunit [Sphingomonas sp. S17]
Length = 380
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/305 (29%), Positives = 163/305 (53%), Gaps = 7/305 (2%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSE-KISFLSTDTEVQITTYTAVGYGNS 66
E+ +L L V S+VE++N +PILSN+L+ +E ++ ++TD ++QI A
Sbjct: 15 ERATLLKGLSHVQSVVERRNTIPILSNVLLEATAEGQLRMMATDLDLQINDSVAAAVDQP 74
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSK 126
+ V+A DI R LPE +V + M I +G+++F+L TL ++P++ +
Sbjct: 75 G-STTVSAHTLFDIARKLPEGAQVQLTAAEGRMTIVAGRARFSLGTLPRDDFPVIA-EGE 132
Query: 127 YDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIAVSSDGHRLTY 182
+F L + LK I++ F+I+ ++ RYYLNG+ L + N + A ++DGHRL
Sbjct: 133 LPTQFELPVELLKQIIDKTRFAISTEETRYYLNGIFLHVAEDNGAPVLKAAATDGHRLAR 192
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+ D+I+PRK V L++LL+ + V + +S +I+ + SKLID
Sbjct: 193 VTIERPNGAEGMPDVIVPRKCVAELRKLLDEVDGSVGVSLSGTKIRFDLGQAILTSKLID 252
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSN 302
G F DY VI +K ++ ++ + R+S I+ +K + V++ + + + ++V+S
Sbjct: 253 GTFPDYSRVIPTANDKILKLDPKAFMQGVDRVSTIATEKTRAVKMALDRDRITLSVTSPE 312
Query: 303 REKAS 307
AS
Sbjct: 313 NGTAS 317
>gi|395785520|ref|ZP_10465252.1| DNA polymerase III, beta subunit [Bartonella tamiae Th239]
gi|423717581|ref|ZP_17691771.1| DNA polymerase III, beta subunit [Bartonella tamiae Th307]
gi|395425067|gb|EJF91238.1| DNA polymerase III, beta subunit [Bartonella tamiae Th239]
gi|395426981|gb|EJF93097.1| DNA polymerase III, beta subunit [Bartonella tamiae Th307]
Length = 372
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/318 (30%), Positives = 186/318 (58%), Gaps = 12/318 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M++VV+ ++ +L L V +VE++N +PILSN+L+ + K+ F +TD ++++T T
Sbjct: 1 MRIVVD--RSHLLKSLSRVHRVVERRNTIPILSNVLIDASQGKVEFKATDLDLEVTEQT- 57
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIEN--KHMFIKSGKSKFTLQTLDAKEY 118
+G V A DI+R LP+ +V + + + + M + SG+S F LQ L ++
Sbjct: 58 LGNIEQDGATTVPAHLLYDIVRKLPDGGEVKLSVSDNGQTMSVISGRSNFKLQCLPKADF 117
Query: 119 PIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGL---LLSFQKKNIIAVSS 175
P ++ ++ FTL+ LK +++ F+I+ ++ RYYLNG+ ++ + + AV++
Sbjct: 118 PELSAG-EFTHHFTLTASALKRLIDCTQFAISTEETRYYLNGIHFHVIDNEGLKLRAVAT 176
Query: 176 DGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLL-ENKENPVELKISNNQIKIIFSNI 234
DGHRL ++ + IIIPRK V LQ+LL ++ + +++++S ++I+ + ++
Sbjct: 177 DGHRLAQAEMVAAEGSEGMPGIIIPRKAVSELQKLLGDDSDAEIKIELSESKIRFVVDSV 236
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+ SKLIDG F +Y+ VI +K +++R ++ R+S IS+D+ + V+L I+ +
Sbjct: 237 VLTSKLIDGTFPEYQRVIPVNNDKKLVIDRQGFASAVDRVSTISSDRGRAVKLSIESGQV 296
Query: 295 KITVSSSNREKASSTDLI 312
+TV +N + S+ D I
Sbjct: 297 TLTV--NNPDSGSAEDQI 312
>gi|407777937|ref|ZP_11125204.1| DNA polymerase III subunit beta [Nitratireductor pacificus pht-3B]
gi|407300333|gb|EKF19458.1| DNA polymerase III subunit beta [Nitratireductor pacificus pht-3B]
Length = 372
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 175/309 (56%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + +TD ++++T A +
Sbjct: 6 ERSTLLKSLNHVHRVVERRNTIPILSNVLLNADGASLQLKATDLDLEVTEAAAATIEQAG 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIE--NKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A DI+R LP+ +V + + M + SG+S F LQ L ++P ++ +
Sbjct: 66 ATT-VPAHLLYDIVRKLPDGAEVMLKTDESGNAMSVVSGRSSFRLQCLPQSDFPELSAGN 124
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL-SFQKKNII---AVSSDGHRLT 181
+ F L LK ++ F+I+ ++ RYYLNG+ L + ++ + +V++DGHRL
Sbjct: 125 -FSHIFRLDSTALKDLIEKTQFAISTEETRYYLNGIFLHAIEEGGALKLRSVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
+++ + IIIPRKTV LQ+L++N + V +++S+N+I+ ++ + SKLI
Sbjct: 184 RAEMDAPAGSENMPGIIIPRKTVGELQKLVDNPDIAVTVELSDNKIRFTIGSVILTSKLI 243
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K+ +++R ++ R+S IS+++ + V++ I + +TV +
Sbjct: 244 DGTFPDYQRVIPTGNDKALIIDRQSFAAAVDRVSTISSERGRAVKMSITDGQVTLTV--N 301
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 302 NPDSGSATE 310
>gi|240849790|ref|YP_002971178.1| DNA polymerase III subunit beta [Bartonella grahamii as4aup]
gi|240266913|gb|ACS50501.1| DNA polymerase III subunit beta [Bartonella grahamii as4aup]
Length = 373
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 170/309 (55%), Gaps = 9/309 (2%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
+ +++ L L V +VE++N +PILSN+L+ + + +TD ++++T AV
Sbjct: 3 ITVDRSQFLKSLGRVHRVVERRNTVPILSNVLIDAENGSVQLKATDLDLEVTESFAVNVK 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH---MFIKSGKSKFTLQTLDAKEYPIM 121
+ V A DI+R LP++ +V + ++ M + SG + F LQ L ++P
Sbjct: 63 QAGATT-VPAHLLYDIIRKLPDSNEVVLSVDENQAGTMSVVSGCAHFQLQCLPKADFP-E 120
Query: 122 TLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIA---VSSDGH 178
+L ++ + F+LS +LK +L+ F+I+ ++ RYYLNG+ L ++ V++DGH
Sbjct: 121 SLPGQFGYRFSLSASSLKHLLDCTQFAISTEETRYYLNGIYLHVINDGVLKLRLVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLL-ENKENPVELKISNNQIKIIFSNIEII 237
RL ++ +I+PRK V LQ+LL E ++ V +++S +I+ ++
Sbjct: 181 RLAQVEMEAPSGVEGMPGVIVPRKAVGELQKLLSEENDSDVCIELSETKIRFSVGSVIFT 240
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKLIDG F DY+ VI +K +VNR ++ R+S IS+D+ + V+L I+ L++
Sbjct: 241 SKLIDGTFPDYQRVIPLGNDKELIVNRQDFSSAVDRVSTISSDRGRAVKLTIEHRQLRLV 300
Query: 298 VSSSNREKA 306
V+S + A
Sbjct: 301 VNSPDSGSA 309
>gi|148555705|ref|YP_001263287.1| DNA polymerase III subunit beta [Sphingomonas wittichii RW1]
gi|148500895|gb|ABQ69149.1| DNA polymerase III, beta subunit [Sphingomonas wittichii RW1]
Length = 370
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 160/304 (52%), Gaps = 6/304 (1%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEK-ISFLSTDTEVQITTYTAVGYGNS 66
E+ +L L V S+VE++N +PILSN+L+ +E + ++TD ++QI
Sbjct: 6 ERATLLKSLGHVQSVVERRNTIPILSNVLIEATAEGTLRLMATDLDLQIVEAVPAAVDQP 65
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSK 126
V+A DI R LPE +V + M + +G+++F LQTL ++P M +
Sbjct: 66 GATT-VSAHTLFDIARKLPEGSQVQLSAAEGKMQVVAGRARFNLQTLPKDDFP-MIAEGE 123
Query: 127 YDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN---IIAVSSDGHRLTYY 183
F L +TLK +++ F+I+ ++ RYYLNG+ Q + + A ++DGHRL
Sbjct: 124 LPTRFELPAETLKQLIDKTRFAISTEETRYYLNGIFFHVQDEGSPVLKAAATDGHRLARV 183
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDG 243
+ DIIIPRK V L++LL+ + V++ +S+ +I+ + SKLIDG
Sbjct: 184 TIARPDGAEGMPDIIIPRKCVGELRKLLDEVDGSVDITLSSTKIRFGLGTAILTSKLIDG 243
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNR 303
F DY VI +K ++ + + R++ I+++K + V++ + + + ++V+S
Sbjct: 244 TFPDYNRVIPTANDKLLKIDPKSFMEGVDRVATIASEKTRAVKMALDRDKITLSVTSPEN 303
Query: 304 EKAS 307
A+
Sbjct: 304 GTAA 307
>gi|440225266|ref|YP_007332357.1| DNA directed RNA polymerase III, subunit beta [Rhizobium tropici
CIAT 899]
gi|440036777|gb|AGB69811.1| DNA directed RNA polymerase III, subunit beta [Rhizobium tropici
CIAT 899]
Length = 434
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 169/309 (54%), Gaps = 10/309 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ + + +TD +++IT T +
Sbjct: 68 ERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGTNLDMKATDLDLEITEATPANVEQAG 127
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A DI+R L + +V + + M + SG+SKF+LQ L ++P +T S
Sbjct: 128 ATT-VPAHLLYDIVRKLSDGSEVLLATNPDGSSMTVTSGRSKFSLQCLPESDFPDLTAGS 186
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGHRLT 181
+ F L LK +++ F+I+ ++ RYYLNG+ S + AV++DGHRL
Sbjct: 187 -FSHSFKLKASDLKMLIDRTQFAISTEETRYYLNGIFFHTIESGGDLKLRAVATDGHRLA 245
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
V+ IIIPRKTV LQ+L++ + V +++S+ +I++ +I + SKLI
Sbjct: 246 RADVSAPSGSEGMPGIIIPRKTVGELQKLVDTPDAMVTVEVSDAKIRLTIGSIVMTSKLI 305
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301
DG F DY+ VI +K V+ +++ R+S IS+++ + V+L + L +TV +
Sbjct: 306 DGTFPDYQRVIPANNDKEMRVDCETFAQAVDRVSTISSERGRAVKLALSDGQLLLTV--N 363
Query: 302 NREKASSTD 310
N + S+T+
Sbjct: 364 NPDSGSATE 372
>gi|110632364|ref|YP_672572.1| DNA polymerase III subunit beta [Chelativorans sp. BNC1]
gi|110283348|gb|ABG61407.1| DNA polymerase III, beta subunit [Chelativorans sp. BNC1]
Length = 372
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 175/313 (55%), Gaps = 14/313 (4%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQIT--TYTAVGYGN 65
E++ +L L V +VE++N +PILSN+L+ + + +TD ++++T +V G
Sbjct: 6 ERSNLLKSLGHVHRVVERRNTIPILSNVLLSADGASLEMKATDLDLEMTEAAPASVEQGG 65
Query: 66 SSINIIVAARKFIDILRSLPETEKVTIYIE--NKHMFIKSGKSKFTLQTLDAKEYPIMTL 123
++ V A DI+R LP+ +V + ++ + M + SG+S F LQ L ++P +T
Sbjct: 66 ATT---VPAHLLYDIVRKLPDGAEVMLKVDENGQTMSVISGRSTFRLQCLPKADFPALTA 122
Query: 124 NSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIAVSSDGHR 179
++ F + L+ ++ F+I+ ++ RYYLNG+ L + + + AV++DGHR
Sbjct: 123 G-QFSHIFRMESAVLRSLVEKTQFAISTEETRYYLNGIFLHTLESDGALKLRAVATDGHR 181
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L ++ II+PRKTV LQ+L+++ + V +++S+ +I+ ++ + SK
Sbjct: 182 LARAEIEAPAGSEGMPGIIVPRKTVGELQKLVDDPDVAVTVELSDTKIRFTIGSVVLTSK 241
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG F DY+ VI +K L++R ++ R+S +S+++ + V+L I + TV
Sbjct: 242 LIDGTFPDYQRVIPVGNDKELLIDRQSFSAAVDRVSTVSSERGRAVKLSISDGQVTFTV- 300
Query: 300 SSNREKASSTDLI 312
+N + S+T+ I
Sbjct: 301 -NNPDSGSATEEI 312
>gi|288959567|ref|YP_003449908.1| DNA polymerase III subunit beta [Azospirillum sp. B510]
gi|288911875|dbj|BAI73364.1| DNA polymerase III subunit beta [Azospirillum sp. B510]
Length = 376
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 172/316 (54%), Gaps = 14/316 (4%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
+ E+ A+L L V S+VE++N +PILSN+L+ ++S +TD +++I G
Sbjct: 3 ITIERAALLRSLGHVQSVVERRNTIPILSNVLLRAGDGELSLAATDMDLEIVETVPATVG 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH--MFIKSGKSKFTLQTLDAKEYPIMT 122
A DI+R LP+ +V + I + +++G+S+F L L +++P ++
Sbjct: 63 RPG-GTTAPAHTLFDIVRKLPDGSQVELDIGGDGTILTLRAGRSQFKLSCLPVEDFPQLS 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNII--------AVS 174
+ F++ L+ +++ F+I+ ++ RYYLNG+ L K + AV+
Sbjct: 122 -SGDLKHNFSVPAADLRGLIDRTRFAISTEETRYYLNGIYLHAAKSKMGGLETPVLRAVA 180
Query: 175 SDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNI 234
+DGHRL ++ + +IIPRKTV +++L++ + +EL +S+N+I+ F ++
Sbjct: 181 TDGHRLARVEMPLPDGAEGIPGVIIPRKTVTEIRKLVDEAADRIELSMSDNKIRFGFDSV 240
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
+ SKLIDG F DY+ VI +K V+ ++ R++ IS +K + V+L + L
Sbjct: 241 VVTSKLIDGTFPDYERVIPVGNDKVMEVDAKLFAAAVDRVATISTEKSRAVKLSLVRGAL 300
Query: 295 KITVSSSNREKASSTD 310
T+S+++ E S+T+
Sbjct: 301 --TLSATSPESGSATE 314
>gi|90420503|ref|ZP_01228410.1| DNA polymerase III, beta subunit [Aurantimonas manganoxydans
SI85-9A1]
gi|90335231|gb|EAS48984.1| DNA polymerase III, beta subunit [Aurantimonas manganoxydans
SI85-9A1]
Length = 374
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 170/315 (53%), Gaps = 12/315 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M++++ E++ +L L V +VE++N +PILSN+L+ E + +TD +++IT +A
Sbjct: 1 MRIII--ERSNLLKSLAHVHRVVERRNTIPILSNVLLKTEGEGLRLKATDLDLEITE-SA 57
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIY--IENKHMFIKSGKSKFTLQTLDAKEY 118
G V A DI+R LP+ +V++ E M + SG+S F LQ L ++
Sbjct: 58 PATGEQEGATTVPAHLLYDIVRKLPDGAEVSLATNAEGTQMTVSSGRSNFRLQCLPESDF 117
Query: 119 PIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIAVS 174
P +T + F L L ++ F+I+ ++ RYYLNG+ L + + + AV+
Sbjct: 118 PDITAGT-LSHAFKLKAAELGRLIERTQFAISTEETRYYLNGIYLHTIEADGDLQLRAVA 176
Query: 175 SDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLL--ENKENPVELKISNNQIKIIFS 232
+DGHRL IIIPRKTV LQ+LL N E + +++S+ +I+
Sbjct: 177 TDGHRLARADQKAPAGSEGMPGIIIPRKTVGELQKLLGDSNDEAEISVELSDAKIRFTIG 236
Query: 233 NIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPN 292
+ + SKLIDG F DY+ VI +K+ ++R ++ R+S IS+++ + V+L + +
Sbjct: 237 AVVMTSKLIDGTFPDYQRVIPQNNDKALTLDRQTFSAAVDRVSTISSERGRAVKLAVADS 296
Query: 293 YLKITVSSSNREKAS 307
L +TV+S + A+
Sbjct: 297 QLVLTVNSPDSGTAT 311
>gi|398828060|ref|ZP_10586262.1| DNA polymerase III, beta subunit [Phyllobacterium sp. YR531]
gi|398218778|gb|EJN05280.1| DNA polymerase III, beta subunit [Phyllobacterium sp. YR531]
Length = 372
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 171/312 (54%), Gaps = 10/312 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V E++ +L L V +VE++N +PILSN+L+ + ++ +TD ++++T TA
Sbjct: 3 VTLERSNLLKSLNHVHRVVERRNTIPILSNVLLHADGASLALKATDLDLEVTEATAAQIE 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ V A DI+R LP+ +V + + M + SG+S F LQ L ++P +T
Sbjct: 63 QAGATT-VPAHLLYDIVRKLPDGAEVMLATNTDGNSMAVTSGRSSFRLQCLPQSDFPELT 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIAVSSDGH 178
+ + F + LK +++ F+I+ ++ RYYLNG+ S + AV++DGH
Sbjct: 122 AGT-FTHTFRIPSSALKGLIDRTQFAISTEETRYYLNGIYFHAIESDGALKLRAVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
RL ++ IIIPRKTV LQ+L+++ + V +++S +I+ ++ + S
Sbjct: 181 RLARAELEAPAGSEGMPGIIIPRKTVAELQKLVDDPDVVVTVELSETKIRFTIGSVVLTS 240
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY+ VI + +K ++R ++ R+S IS+++ + V+L I + +TV
Sbjct: 241 KLIDGTFPDYQRVIPSGNDKKLTIDRQSFASAVDRVSTISSERGRAVKLTIAEGQVTLTV 300
Query: 299 SSSNREKASSTD 310
+N + S+TD
Sbjct: 301 --NNPDSGSATD 310
>gi|114704370|ref|ZP_01437278.1| DNA polymerase III subunit beta [Fulvimarina pelagi HTCC2506]
gi|114539155|gb|EAU42275.1| DNA polymerase III subunit beta [Fulvimarina pelagi HTCC2506]
Length = 374
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 166/308 (53%), Gaps = 10/308 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ +L L V +VE++N +PILSN+L+ +E + +TD +++IT A G
Sbjct: 6 ERSNLLKSLAHVHRVVERRNTIPILSNVLLRAKAETLGLKATDLDIEITEEVAA-QGEQE 64
Query: 68 INIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS 125
V A DI+R LP+ +V + + E M + +G+S F LQ L ++P +T
Sbjct: 65 GATTVPAHLLYDIVRKLPDGAEVKLVLNSEGTQMTVSAGRSNFRLQCLPETDFPDITAG- 123
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN----IIAVSSDGHRLT 181
+ FT+ L ++ F+I+ ++ RYYLNG+ L + + AV++DGHRL
Sbjct: 124 ELSHGFTMEAGALARLIERTQFAISTEETRYYLNGIYLHTIDADGTLMLRAVATDGHRLA 183
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIF--SNIEIISK 239
++ II+PRKTV +Q+LL + E+ E+ + ++ KI F + + SK
Sbjct: 184 RAEMTAPSGSEGMPGIIVPRKTVGEIQKLLADCEDDDEIAVDLSESKIRFKIGRVVMTSK 243
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG F DY+ VI +K ++R ++ R+S IS+++ + V+L + + L +TV+
Sbjct: 244 LIDGTFPDYQRVIPQNNDKELTLDRASFSSAVDRVSTISSERGRAVKLTLADSQLTLTVN 303
Query: 300 SSNREKAS 307
S + A+
Sbjct: 304 SPDAGTAT 311
>gi|121601944|ref|YP_989527.1| DNA polymerase III subunit beta [Bartonella bacilliformis KC583]
gi|421761329|ref|ZP_16198132.1| DNA polymerase III subunit beta [Bartonella bacilliformis INS]
gi|120614121|gb|ABM44722.1| DNA polymerase III, beta subunit [Bartonella bacilliformis KC583]
gi|411173113|gb|EKS43161.1| DNA polymerase III subunit beta [Bartonella bacilliformis INS]
Length = 373
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 100/313 (31%), Positives = 171/313 (54%), Gaps = 11/313 (3%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
V ++N L L V +VE++N +PILSN+L+ +S+ + +TD +++IT ++ V +
Sbjct: 3 VTIDRNQFLKSLGCVHRVVERRNTVPILSNVLIDADSDGMRLKATDLDLEITEFS-VPHI 61
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKH---MFIKSGKSKFTLQTLDAKEYPIM 121
+ I V A DI+R LP+ ++ + ++ M + SG + F LQ ++P
Sbjct: 62 EQTGGITVPAHLLYDIVRKLPDGNEIILAVDADRPNTMSVISGFANFRLQGFPKMDFP-E 120
Query: 122 TLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIA---VSSDGH 178
+L +++F F+L LK +L+ F+I+ ++ RYYLNG+ + V++DGH
Sbjct: 121 SLPGQFNFRFSLLASDLKHLLDCTQFAISTEETRYYLNGIYFHIVNDGALKLRLVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLL-ENKENPVELKISNNQIKIIFSNIEII 237
RL + +IIPRKTV LQRLL E +N V +++S +I+ ++ +
Sbjct: 181 RLAQVDMEAPSGSEGMPGVIIPRKTVGELQRLLSEEADNYVCIELSETKIRFSVGSVVLT 240
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
SKLIDG F +Y+ VI +K VNR ++ R+S IS+D+ + V+L I+ L+
Sbjct: 241 SKLIDGTFPEYQRVIPLGNDKKLTVNRRDFSSTVDRVSTISSDRGRAVKLTIENGQLRFV 300
Query: 298 VSSSNREKASSTD 310
V +N + S+ D
Sbjct: 301 V--NNPDSGSAED 311
>gi|290953774|ref|ZP_06558395.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
holarctica URFT1]
Length = 351
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 161/289 (55%), Gaps = 2/289 (0%)
Query: 19 VISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFI 78
++S+ K+ +P+LS IL ++ + ++D + +I+ AV N++I + + A K
Sbjct: 1 MLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVS-CNTTIKLALNADKIY 59
Query: 79 DILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTL 138
+I+RSL E + I + I S S F L +L+A YP++ N F LSQ+
Sbjct: 60 NIVRSLNENSMIDFRINENKVTIVSNNSTFNLISLNADNYPLIDSNINEQASFDLSQQDF 119
Query: 139 KCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKK-FSSCSDI 197
I++ V FS+A D RY+LNG+ + AVS+DGHR++ + ID K S S
Sbjct: 120 HHIISKVDFSMANDDTRYFLNGMFWEINANLLRAVSTDGHRMSITEAIIDSKVLDSASQS 179
Query: 198 IIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVISNKYE 257
IIP+K + L++++ E +++ + N +K IF N ISKLIDG++ DY+ VI
Sbjct: 180 IIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYAFISKLIDGRYPDYQKVIPKNNT 239
Query: 258 KSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
K V++ SL R SI++NDK KGVRL I N L ++ ++ + EKA
Sbjct: 240 KLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLLLSANNPDNEKA 288
>gi|163797311|ref|ZP_02191264.1| ApaG [alpha proteobacterium BAL199]
gi|159177402|gb|EDP61958.1| ApaG [alpha proteobacterium BAL199]
Length = 373
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 171/307 (55%), Gaps = 10/307 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG-NS 66
++ A+L PL V S+VE++N +PIL+N+L+ +S +TD ++ + +VG +
Sbjct: 6 DRAALLKPLAHVQSVVERRNTIPILANVLLRAADGTLSLTATDMDLDV--VESVGCSVDQ 63
Query: 67 SINIIVAARKFIDILRSLPETEKV--TIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLN 124
V A +I+R L + +V T ++ M I++G+S F+L TL +E+P ++ +
Sbjct: 64 PGQTTVPAHTLYEIVRKLQDGSEVELTAVGDSGRMTIRAGRSNFSLPTLPMEEFPALSGD 123
Query: 125 SKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAV----SSDGHRL 180
+ F LS K +++ F+I+ ++ RYYLNG+ L K +AV ++DGHRL
Sbjct: 124 T-LPTSFVLSAADAKTLIDRTRFAISTEETRYYLNGIFLHEAKAGDVAVLRAVATDGHRL 182
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL 240
Q+ + + +I+PRK V +++L+E + V++ +S N+++ F + + +KL
Sbjct: 183 ARVQMPLPTGAAGMPAVIVPRKAVQEIRKLIEETDGDVQVSLSENKLRFAFESSVLTTKL 242
Query: 241 IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS 300
IDG F DY+ VI +K V + R++ R++ IS +K + V+L + L ++ +S
Sbjct: 243 IDGTFPDYERVIPTGNDKMLRVESSMFKRAVDRVATISTEKSRSVKLSLTSGTLTLSANS 302
Query: 301 SNREKAS 307
+ +A+
Sbjct: 303 PDNAQAT 309
>gi|296285052|ref|ZP_06863050.1| DNA polymerase III subunit beta [Citromicrobium bathyomarinum
JL354]
Length = 375
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 173/308 (56%), Gaps = 9/308 (2%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEK-ISFLSTDTEVQITTYTAVGYGNS 66
E+ +L L V S+VE++N +PILSN+L+ ++ + ++TD ++Q+ S
Sbjct: 6 ERATLLRCLSHVQSVVERRNTIPILSNVLIDADAGGGVKVMATDLDLQVVETMTAASVES 65
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSK 126
+ I V+A DI R LP+ +V++ + M +K+G+S+F L TL ++P++ + +
Sbjct: 66 AGAITVSAHLLFDIARKLPDGSQVSLETADNRMVVKAGRSRFQLPTLPRDDFPVI-VEGE 124
Query: 127 YDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL--SFQKKNII-AVSSDGHRLTYY 183
F L + L +++ F+I+ ++ RYYLNG+ L S + + ++ A ++DGHRL Y
Sbjct: 125 LPTSFELPARELAEMIDRTRFAISTEETRYYLNGIFLHVSDEARPVLKAAATDGHRLARY 184
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENK-ENPVELKISNNQIKIIF---SNIEIISK 239
++ + D+I+PRK V L++LLE ++ V++ +S ++I+ + + SK
Sbjct: 185 TLDRPEGAEGMPDVIVPRKAVGELRKLLEEALDSNVQIDLSASKIRFALGGEGGVVLTSK 244
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG F DY VI +K ++ + + R++ I+ +K + V++ + + + ++V+
Sbjct: 245 LIDGTFPDYSRVIPTGNDKLLRLDPKAFFQGVDRVATIATEKTRAVKMGLDEDKVTLSVT 304
Query: 300 SSNREKAS 307
S + A+
Sbjct: 305 SPDNGTAA 312
>gi|85374293|ref|YP_458355.1| DNA polymerase III subunit beta [Erythrobacter litoralis HTCC2594]
gi|84787376|gb|ABC63558.1| DNA polymerase III beta subunit [Erythrobacter litoralis HTCC2594]
Length = 375
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 166/308 (53%), Gaps = 9/308 (2%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILV-CKNSEKISFLSTDTEVQITTYTAVGYGNS 66
E+ +L L V S+VE++N +PILSNIL+ + + ++TD ++Q+ S
Sbjct: 6 ERATLLRCLSHVQSVVERRNTIPILSNILIEAGDGSAVKVMATDLDLQVVETMNAASVES 65
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSK 126
S + V+A DI R LP+ +V++ + + M IK+G+S+F L TL ++P++ +
Sbjct: 66 SGSTTVSAHLLFDIARKLPDGSQVSLEVADNRMTIKAGRSRFQLPTLPKDDFPVI-VEGD 124
Query: 127 YDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN---IIAVSSDGHRLTYY 183
F + KTL +++ F+I+ ++ RYYLNG+ L ++ + A ++DGHRL +
Sbjct: 125 LPTSFEIPAKTLAELIDRTRFAISTEETRYYLNGIFLHVSDEDTPVLKAAATDGHRLARF 184
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENK-ENPVELKISNNQIKIIF---SNIEIISK 239
+ D+I+PRK V L++LLE + + V + +S ++I+ + SK
Sbjct: 185 TLARPDGADGMPDVIVPRKAVGELRKLLEERMDGNVVVDLSASKIRFTLGGEGGTVLTSK 244
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG F DY VI +K V+ + R++ I+ +K + V++ + + + ++V+
Sbjct: 245 LIDGTFPDYSRVIPTGNDKLLKVDPKSFFEGVDRVATIATEKTRAVKMGLDADKVTLSVT 304
Query: 300 SSNREKAS 307
S + AS
Sbjct: 305 SPDNGTAS 312
>gi|410447039|ref|ZP_11301141.1| DNA polymerase III, beta subunit [SAR86 cluster bacterium SAR86E]
gi|409980026|gb|EKO36778.1| DNA polymerase III, beta subunit [SAR86 cluster bacterium SAR86E]
Length = 365
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 167/304 (54%), Gaps = 7/304 (2%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
+ +K I+ L + +VEK+ LPIL+N+L + +TD E +++ +
Sbjct: 3 ITVKKEDIVSALNTTLGVVEKRQTLPILANVLFEVDESSFKLTATDLESEVSISGPLVGV 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLN 124
S+ +A+K ++ R +P+ E +++ + + + IK+ K++L TL + ++PI ++
Sbjct: 63 ESAGKTTTSAKKLNELCRLIPDGEIISLSLAGEKLNIKTTNGKYSLSTLPSADFPIFDID 122
Query: 125 SKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQ 184
S D + K L+ ++ F++ QD R+YLNGL L+ I AV++D HRL
Sbjct: 123 SG-DTPLVVPAKDLRELIRSTSFAMGNQDWRHYLNGLYLTINDGEITAVTTDAHRLAVAN 181
Query: 185 VNI--DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+I D FS IIPRK++ + + L + + ELKI+ ++++ N+ SKLID
Sbjct: 182 TSIQSDHSFSG----IIPRKSINEMAKFLSDHDGDSELKINEASLELVVGNLVFKSKLID 237
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSN 302
GKF DY+ VI + +N +L R+S++S++K KG+RL+ + ++I+ ++
Sbjct: 238 GKFPDYQQVIPSGESSVLEINVKDFSETLSRVSVLSSEKYKGIRLITSSDGVRISANNPE 297
Query: 303 REKA 306
+E+A
Sbjct: 298 QEEA 301
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.135 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,156,651,068
Number of Sequences: 23463169
Number of extensions: 158875493
Number of successful extensions: 468628
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2823
Number of HSP's successfully gapped in prelim test: 1328
Number of HSP's that attempted gapping in prelim test: 458328
Number of HSP's gapped (non-prelim): 4433
length of query: 314
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 172
effective length of database: 9,027,425,369
effective search space: 1552717163468
effective search space used: 1552717163468
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)