BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13355
(314 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0A988|DPO3B_ECOLI DNA polymerase III subunit beta OS=Escherichia coli (strain K12)
GN=dnaN PE=1 SV=1
Length = 366
Score = 219 bits (558), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ +NP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>sp|P0A989|DPO3B_ECOL6 DNA polymerase III subunit beta OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=dnaN PE=3 SV=1
Length = 366
Score = 219 bits (558), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ +NP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>sp|P0A990|DPO3B_ECO57 DNA polymerase III subunit beta OS=Escherichia coli O157:H7 GN=dnaN
PE=3 SV=1
Length = 366
Score = 219 bits (558), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 176/299 (58%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ +NP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>sp|P26464|DPO3B_SALTY DNA polymerase III subunit beta OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=dnaN PE=3 SV=3
Length = 366
Score = 217 bits (552), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 173/299 (57%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ + +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLSQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + V++DGHRL + +
Sbjct: 125 EVEFTLPQATMKRLIESTQFSMAHQDVRYYLNGMLFETEGSELRTVATDGHRLAVCSMPL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ S S +I+PRK V L R+L+ ENP+ ++I +N I+ + SKL+DG+F D
Sbjct: 185 EASLPSHS-VIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEA 302
>sp|Q9I7C4|DPO3B_PSEAE DNA polymerase III subunit beta OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dnaN
PE=3 SV=1
Length = 367
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 166/289 (57%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLEDAAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I +E + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
F+++Q L+ +++ F++AQQD+RYYLNG+LL + +V++DGHRL ++
Sbjct: 125 SLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMCSLDA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+I+PRK + L RLL ++ V + + + I+ SKL+DGKF D
Sbjct: 185 QIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R +L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKI 293
>sp|P0A121|DPO3B_PSEPU DNA polymerase III subunit beta OS=Pseudomonas putida GN=dnaN PE=3
SV=1
Length = 367
Score = 202 bits (514), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 163/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDALIDIKVDEQKLLVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
L Q L+ ++ F++AQQD+RYYLNG+LL + + AVS+DGHRL ++
Sbjct: 125 SLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLRAVSTDGHRLALCSMSA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ +I+PRK + L RLL + E V + + + I+ SKL+DGKF D
Sbjct: 185 PIEQEDRHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVVGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLKI 293
>sp|P0A120|DPO3B_PSEPK DNA polymerase III subunit beta OS=Pseudomonas putida (strain
KT2440) GN=dnaN PE=3 SV=1
Length = 367
Score = 202 bits (514), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 163/289 (56%), Gaps = 1/289 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
++ A+L PLQ+V +VE++ LP+LSN+L+ +++S TD EV++ +
Sbjct: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLEEPAEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
I V ARK +DI +SLP + I ++ + + +K+G+S+FTL TL A ++P +
Sbjct: 66 GEITVPARKLMDICKSLPNDALIDIKVDEQKLLVKAGRSRFTLSTLPANDFPTVE-EGPG 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
L Q L+ ++ F++AQQD+RYYLNG+LL + + AVS+DGHRL ++
Sbjct: 125 SLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLRAVSTDGHRLALCSMSA 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
+ +I+PRK + L RLL + E V + + + I+ SKL+DGKF D
Sbjct: 185 PIEQEDRHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRATTGEFTFTSKLVDGKFPD 244
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
Y+ V+ +K + +R L + R +I+SN+K +G+RL + LKI
Sbjct: 245 YERVLPKGGDKLVVGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLKI 293
>sp|Q9KVX5|DPO3B_VIBCH DNA polymerase III subunit beta OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=dnaN PE=3
SV=1
Length = 366
Score = 200 bits (509), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 179/299 (59%), Gaps = 2/299 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ ++S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLEGEFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V ARKF+DI R LP++ +T+ +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPASDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ + +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q +
Sbjct: 125 EVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVAQAQL 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLD 247
F+ II+PRK V L +LL+ E PV L+I ++ ++ ++ SKL+DG+F D
Sbjct: 185 GADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y+ V+ K+ +L ++ R +I+SN+K +GVR+ + N ++IT ++ +E+A
Sbjct: 244 YRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNGMRITANNPEQEEA 302
>sp|P22838|DPO3B_PROMI DNA polymerase III subunit beta OS=Proteus mirabilis GN=dnaN PE=3
SV=1
Length = 367
Score = 200 bits (508), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 175/300 (58%), Gaps = 3/300 (1%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ ++ +
Sbjct: 6 EREQLLKPLQQVSGPLGGRPTLPILGNLLLKVTENTLSLTGTDLEMEMMARVSLSQSHEI 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++++ ++ + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDIWRGLPEGAEISVELDGDRLLVRSGRSRFSLSTLPASDFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q TLK ++ FS+A QD+RYYLNG+L + + V++DGHRL ++I
Sbjct: 125 EVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETENTELRTVATDGHRLAVCAMDI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLEN-KENPVELKISNNQIKIIFSNIEIISKLIDGKFL 246
+ S +I+PRK V L RLL+ E+ ++L+I +N ++ + SKL+DG+F
Sbjct: 185 GQSLPGHS-VIVPRKGVIELMRLLDGSGESLLQLQIGSNNLRAHVGDFIFTSKLVDGRFP 243
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
DY+ V+ K+ + + L ++ R +I+SN+K +GVR+ + LKIT ++ +E+A
Sbjct: 244 DYRRVLPKNPTKTVIAGCDILKQAFSRAAILSNEKFRGVRINLTNGQLKITANNPEQEEA 303
>sp|P43744|DPO3B_HAEIN DNA polymerase III subunit beta OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dnaN PE=3 SV=1
Length = 366
Score = 196 bits (497), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 181/307 (58%), Gaps = 6/307 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
MQ ++ E +L PLQ V ++ + +P+L+N+L+ +++ TD EV++++ T
Sbjct: 1 MQFSISREN--LLKPLQQVCGVLSNRPNIPVLNNVLLQIEDYRLTITGTDLEVELSSQTQ 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + + + A+KF+DI R+L + ++T+ E ++SG+S+FTL T A+EYP
Sbjct: 59 LSSSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRALVQSGRSRFTLATQPAEEYPN 118
Query: 121 MT-LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+T S+ DFE L Q TL+ ++ FS+A QD RY+LNG+ + + V++DGHR
Sbjct: 119 LTDWQSEVDFE--LPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHR 176
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L ++++++ + S +I+PRK V L RLLE + P L+I N +++ N SK
Sbjct: 177 LAVCTISLEQELQNHS-VILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTSK 235
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
LIDG+F DY+ V+ K N L ++ R SI+SN++ + VRL +K N LKIT S
Sbjct: 236 LIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFARASILSNERARSVRLSLKENQLKITAS 295
Query: 300 SSNREKA 306
++ E+A
Sbjct: 296 NTEHEEA 302
>sp|P0CAU5|DPO3B_CAUCR DNA polymerase III subunit beta OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=dnaN PE=3 SV=1
Length = 372
Score = 161 bits (408), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 169/306 (55%), Gaps = 14/306 (4%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L + E+ A+L L V S+VE++N +PILSNIL+ +++SF +TD +++I
Sbjct: 1 MKLTI--ERAALLKALGHVQSVVERRNTIPILSNILLSAEGDRLSFSATDLDMEIIDE-- 56
Query: 61 VGYGNSSI--NIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAK 116
G+ + I A +I+R LP+ V++ ++ + I++G+S+F L L A
Sbjct: 57 -GFAQIDVPGQITAPAHTLYEIVRKLPDGADVSLSFSGDDPRLVIQAGRSRFNLPVLPAG 115
Query: 117 EYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIA 172
++P+M+ + + L +++ F+I+ ++ RYYLNGL + + + A
Sbjct: 116 DFPVMS-SDGLSSRIAVDTNELIRLIDKTRFAISTEETRYYLNGLYVHTVNEGGETKLRA 174
Query: 173 VSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFS 232
V++DGHRL ++ + +I+PRKT+ +RL+E+ V+L++S +++ F
Sbjct: 175 VATDGHRLALAEMPAPEGAVGIPGVIVPRKTIAEARRLMESAGETVDLQVSPQKVRFEFG 234
Query: 233 NIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPN 292
+ SK+IDG F DY VI K ++ + +++ R++ IS +K + V+L ++P
Sbjct: 235 AAALTSKVIDGAFPDYMRVIPRDNAKILTLDNDLFAKAVDRVATISAEKSRSVKLAVEPG 294
Query: 293 YLKITV 298
+ +TV
Sbjct: 295 RITLTV 300
>sp|B8GXP6|DPO3B_CAUCN DNA polymerase III subunit beta OS=Caulobacter crescentus (strain
NA1000 / CB15N) GN=dnaN PE=3 SV=1
Length = 372
Score = 161 bits (408), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 169/306 (55%), Gaps = 14/306 (4%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L + E+ A+L L V S+VE++N +PILSNIL+ +++SF +TD +++I
Sbjct: 1 MKLTI--ERAALLKALGHVQSVVERRNTIPILSNILLSAEGDRLSFSATDLDMEIIDE-- 56
Query: 61 VGYGNSSI--NIIVAARKFIDILRSLPETEKVTIYI--ENKHMFIKSGKSKFTLQTLDAK 116
G+ + I A +I+R LP+ V++ ++ + I++G+S+F L L A
Sbjct: 57 -GFAQIDVPGQITAPAHTLYEIVRKLPDGADVSLSFSGDDPRLVIQAGRSRFNLPVLPAG 115
Query: 117 EYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL----SFQKKNIIA 172
++P+M+ + + L +++ F+I+ ++ RYYLNGL + + + A
Sbjct: 116 DFPVMS-SDGLSSRIAVDTNELIRLIDKTRFAISTEETRYYLNGLYVHTVNEGGETKLRA 174
Query: 173 VSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFS 232
V++DGHRL ++ + +I+PRKT+ +RL+E+ V+L++S +++ F
Sbjct: 175 VATDGHRLALAEMPAPEGAVGIPGVIVPRKTIAEARRLMESAGETVDLQVSPQKVRFEFG 234
Query: 233 NIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPN 292
+ SK+IDG F DY VI K ++ + +++ R++ IS +K + V+L ++P
Sbjct: 235 AAALTSKVIDGAFPDYMRVIPRDNAKILTLDNDLFAKAVDRVATISAEKSRSVKLAVEPG 294
Query: 293 YLKITV 298
+ +TV
Sbjct: 295 RITLTV 300
>sp|Q89B36|DPO3B_BUCBP DNA polymerase III subunit beta OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=dnaN PE=3 SV=1
Length = 371
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 168/305 (55%), Gaps = 13/305 (4%)
Query: 16 LQMVISIVEKKNILPILSNILVCKNSEKISFLST--DTEVQITTYTAVGYGNSSINIIVA 73
L+ V +++ + +I PIL NIL+ I+ ST D E++I SI V+
Sbjct: 14 LKKVNNLITRNHIFPILENILLIAKDNTITLTSTNIDMEIKIIILDVTLLEPGSIT--VS 71
Query: 74 ARKFIDILRSLPETEKVTI-YIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFT 132
+K ++I ++LP+ + I YI NK + I S +++ L TL K +P + + S+ F
Sbjct: 72 GKKILNICQNLPKDHNLKIQYINNK-LKIVSHNNQYLLATLPIKNFPNLKI-SENQNNFV 129
Query: 133 LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQ---VNIDK 189
+SQ LK +L YFS+A QD+R +LNGL + +++ AV++DG+R+ + N+DK
Sbjct: 130 ISQNDLKDVLCATYFSMAIQDLRNFLNGLFFEVRNQHLYAVATDGYRIAICKKPLHNLDK 189
Query: 190 KFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYK 249
K + II+PRK V L +LL + + ISNN +I F N+ SK+I KF DY
Sbjct: 190 K--KYNSIILPRKGVLELIKLLNYSNEVISINISNNYFQIEFKNLIFTSKIITEKFPDYT 247
Query: 250 YVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASS- 308
+I K ++N +L R++I+SN+ +GV + N L IT S+ + E+AS
Sbjct: 248 SLILTHISKKMILNTTLFKEALSRVAILSNENFRGVNIKNDQNKLLITTSNQHDEEASEI 307
Query: 309 TDLIY 313
D+IY
Sbjct: 308 IDIIY 312
>sp|P29439|DPO3B_BUCAP DNA polymerase III subunit beta OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=dnaN PE=3 SV=1
Length = 366
Score = 138 bits (347), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 163/289 (56%), Gaps = 9/289 (3%)
Query: 26 KNI-LPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSL 84
KNI PIL NIL+ +S +T+ E+++ + + ++ RK ++I R+L
Sbjct: 23 KNISFPILENILIQVEDGTLSLTTTNLEIELISKIEIITKYIPGKTTISGRKILNICRTL 82
Query: 85 PETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNM 144
E K+ + ++NK M+I S S + L TL A +P N Y +F +S LK ++
Sbjct: 83 SEKSKIKMQLKNKKMYISSENSNYILSTLSADTFPNHQ-NFDYISKFDISSNILKEMIEK 141
Query: 145 VYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL--TYYQVNIDKKFSSCSDIIIPRK 202
FS+ +QD+RYYLNG+LL + K + +V++DG+RL +Y Q+ D F S IIIP K
Sbjct: 142 TEFSMGKQDVRYYLNGMLLEKKDKFLRSVATDGYRLAISYTQLKKDINFFS---IIIPNK 198
Query: 203 TVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVISNKYEKSFLV 262
V L +LL + + + I +N I+I N+ ++LI+G++ DYK V+ + + +
Sbjct: 199 AVMELLKLLNTQPQLLNILIGSNSIRIYTKNLIFTTQLIEGEYPDYKSVLFKEKKNPIIT 258
Query: 263 NRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASSTDL 311
N L +SL R++I++++K G+ + I+ K V S N+E+ ++ DL
Sbjct: 259 NSILLKKSLLRVAILAHEKFCGIEIKIENG--KFKVLSDNQEEETAEDL 305
>sp|P57127|DPO3B_BUCAI DNA polymerase III subunit beta OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=dnaN PE=3 SV=1
Length = 366
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 160/298 (53%), Gaps = 12/298 (4%)
Query: 17 QMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARK 76
Q + ++ K LPIL N+L+ + +S T+ E+++ + + S ++ RK
Sbjct: 15 QKISRLLVKNTSLPILDNVLINIKNGMLSLTGTNLEIELVAMIQLSTEHISGTATISGRK 74
Query: 77 FIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDF----EFT 132
+DI R+ + + + + N M I SG S++ L TL +P+ +DF EF
Sbjct: 75 LLDICRNSLNSSNIEMQLNNNKMHIISGNSRYILTTLPYDSFPV-----HHDFHHISEFF 129
Query: 133 LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFS 192
+ LK ++ + FS+A+QD+RYYLNG+LL +++ AV++DG+RL + + +
Sbjct: 130 IPSDILKKMIEKIQFSMAKQDVRYYLNGILLEKTDRSLYAVATDGYRLGISKFFLKENII 189
Query: 193 SCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVI 252
S I+IPRK V L RLL + P+++ + N I++ ++ ++LI+G++ DYK V+
Sbjct: 190 PFS-IVIPRKGVIELYRLLNIPKQPIKVLVGKNNIRVHIEDLIFTTQLIEGQYPDYKSVL 248
Query: 253 SNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASSTD 310
+N L +SL R +I+S++K GV + I+ K V S N+E+ + D
Sbjct: 249 LENKNNFITLNSKLLKQSLLRAAILSHEKFCGVEIHIRNGQFK--VLSDNQEEEIAED 304
>sp|Q9EVE4|DPO3B_BUCRP DNA polymerase III subunit beta OS=Buchnera aphidicola subsp.
Rhopalosiphum padi GN=dnaN PE=3 SV=1
Length = 366
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 159/285 (55%), Gaps = 8/285 (2%)
Query: 29 LPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLPETE 88
PIL NIL+ + +S +T+ E+++ + + + I ++ RK ++I R+L E
Sbjct: 27 FPILENILIQIENGILSLTTTNLEIELVSKIKIITKYTPGKITISGRKILNICRNLSEKS 86
Query: 89 KVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFS 148
+V + ++ K M++ S + L TL A ++P N + F +S LK ++ FS
Sbjct: 87 EVKMPLKEKKMYVSCENSNYILSTLSADDFPNHQ-NFNHISNFHISSNILKEMIEKTEFS 145
Query: 149 IAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL--TYYQVNIDKKFSSCSDIIIPRKTVFT 206
+ +QD+RYYLNG+LL + + +V++DG+RL +Y ++ D F S IIIP K V
Sbjct: 146 MGKQDVRYYLNGMLLEKKDNFLRSVATDGYRLAISYSKLEKDINFFS---IIIPSKAVME 202
Query: 207 LQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNK 266
L RLL + + + I N I+I ++ ++LI+G++ DY+ V+ + + + N
Sbjct: 203 LSRLLNTQVQLLNILIGTNSIRIYIKDLIFTTQLIEGEYPDYESVLFKEKKNPIIANCTL 262
Query: 267 LLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASSTDL 311
L +SL R +I++++K G+ + I+ N K V S N+E+ ++ DL
Sbjct: 263 LKKSLLRAAILAHEKFCGIEIKIEKN--KFKVLSDNQEEETAEDL 305
>sp|Q9ZDB3|DPO3B_RICPR DNA polymerase III subunit beta OS=Rickettsia prowazekii (strain
Madrid E) GN=dnaN PE=3 SV=1
Length = 381
Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 163/310 (52%), Gaps = 9/310 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
++L+V T+ ++ L SI+EK+N++P +NI + + ST+ ++ ++ A
Sbjct: 2 LKLIVETK--TLMQSLGFARSIIEKRNVIPEYANIKLSAQDGNLELSSTNMDLYLSQKIA 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
V N I VA + DI+R P++E IE + IK KF L TL +P
Sbjct: 60 VQVLNEG-EITVATQTLSDIVRKFPDSELTLTEIEITQLEIKGQNCKFNLFTLPVSSFPA 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
M + K + F +S I+ FSI+ + RY LNG+ L + K A S+DG+RL
Sbjct: 119 MD-SIKPEVSFKISCADFAKIIESTKFSISLDETRYNLNGIYLHIKDKEFFAASTDGYRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKEN---PVELKISNNQIKIIFS-NIEI 236
+ + +++K + +I+P+K+ + +++++ +N +E+ +S+N+IK I + N +
Sbjct: 178 SISWITLEEKIKNFG-VILPQKSAEEILKIVKDPKNIHEDIEILLSSNKIKFICNENTIL 236
Query: 237 ISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
+SKLIDG F DY I ++NR S++RI+II+ +K + V+L + L+I
Sbjct: 237 LSKLIDGTFPDYSAFIPKSSVSKLVINRKIFADSIERIAIITVEKFRAVKLSLSRKILEI 296
Query: 297 TVSSSNREKA 306
+ R A
Sbjct: 297 SAVGEARGTA 306
>sp|Q92I37|DPO3B_RICCN DNA polymerase III subunit beta OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=dnaN PE=3 SV=1
Length = 379
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 164/311 (52%), Gaps = 11/311 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
++L+V T+ ++ L S+VEK+N++P +NI + + ST+ ++ ++ A
Sbjct: 2 LKLIVETK--TLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIA 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
V S V+ + DI+R LP++E + + IK KF L TL +P
Sbjct: 60 VQVV-SEGECTVSTKTLNDIVRKLPDSELTLTDLGTTGLEIKGKNCKFNLFTLPVSSFPA 118
Query: 121 M-TLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
M ++N + F+ + + I+ FSI+ + RY LNG+ L + K + S+DGHR
Sbjct: 119 MDSINPEASFKISCTD--FAKIIESTKFSISLDETRYNLNGVYLHIKDKEFCSASTDGHR 176
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKEN---PVELKISNNQIKIIFS-NIE 235
L+ V ++K+ + +I+P+K+ + +++++ +N +E+ +S+N+IK I + N
Sbjct: 177 LSISWVTLEKQIKNFG-VILPQKSAEEILKIVKDPKNINEDIEILLSSNKIKFICNENTS 235
Query: 236 IISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLK 295
++SKLIDG F DY I ++NR S++RI+II+ +K + V+L + L+
Sbjct: 236 MLSKLIDGTFPDYSTFIPESSSSKLVINRKMFADSIERIAIITVEKFRAVKLSLSRETLE 295
Query: 296 ITVSSSNREKA 306
I+ R A
Sbjct: 296 ISAVGEARGNA 306
>sp|Q4ULS3|DPO3B_RICFE DNA polymerase III subunit beta OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=dnaN PE=3 SV=1
Length = 379
Score = 124 bits (312), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 165/311 (53%), Gaps = 11/311 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
++L+V T+ ++ L S+VEK+N++P +NI + + ST+ ++ ++ A
Sbjct: 2 LKLIVETK--TLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIA 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
V S + V+ + DI+R LP++E + + IK KF L TL +P
Sbjct: 60 VQVV-SEGELTVSTKTLNDIVRKLPDSELTLTDLGTTGLEIKGKNCKFNLFTLPVSSFPP 118
Query: 121 M-TLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
M ++N + F+ + + I+ FSI+ + RY LNG+ L + K + S+DGHR
Sbjct: 119 MDSINPEASFKISCTD--FAKIIESTKFSISLDETRYNLNGVYLHIKDKEFCSASTDGHR 176
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKEN---PVELKISNNQIKIIFS-NIE 235
L+ V ++K+ + +I+P+K+ + +++++ +N +E+ +S+N+IK I + N
Sbjct: 177 LSISWVTLEKQIKNFG-VILPQKSAEEILKIVKDPKNINEDIEILLSSNKIKFICNENTI 235
Query: 236 IISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLK 295
++SKLIDG F DY I ++NR S++RI+II+ +K + V+L + L+
Sbjct: 236 MLSKLIDGTFPDYSAFIPESSSSKLVINRKIFADSIERIAIITVEKFRAVKLSLSRETLE 295
Query: 296 ITVSSSNREKA 306
I+ R A
Sbjct: 296 ISAVGEARGNA 306
>sp|Q68WW0|DPO3B_RICTY DNA polymerase III subunit beta OS=Rickettsia typhi (strain ATCC
VR-144 / Wilmington) GN=dnaN PE=3 SV=1
Length = 381
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 162/310 (52%), Gaps = 9/310 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
++L+V T+ ++ L S+VEK+N++P +NI + + ST+ ++ ++ A
Sbjct: 2 LKLIVETK--TLVQSLGFARSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIA 59
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
V + I V+ + DI+R LP++E ++ + IK +F L TL +P
Sbjct: 60 VQVLSEG-EITVSTQTLSDIVRKLPDSELTLTELDIMKLEIKGQNCQFNLFTLPVSSFPA 118
Query: 121 MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL 180
M + K + F +S I+ FSI+ + RY LNG+ L + K A S+DGHRL
Sbjct: 119 MD-SIKPEVSFKISCADFAKIIESTKFSISLDETRYNLNGIYLHIKDKEFFAASTDGHRL 177
Query: 181 TYYQVNIDKKFSSCSDIIIPRKT---VFTLQRLLENKENPVELKISNNQIKIIFS-NIEI 236
+ + +++K + +I+P+K+ + + + L+N +E+ +S+N+IK I + N +
Sbjct: 178 SISWITLEEKIKNFG-VILPQKSAEEILKIVKDLKNIHEDIEILLSSNKIKFICNENTIL 236
Query: 237 ISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKI 296
+SKLIDG F DY I ++NR S++RI+II+ +K + ++L + L+I
Sbjct: 237 LSKLIDGTFPDYSAFIPKSSISKLVINRKIFADSIERIAIITVEKFRAIKLSLSRKTLEI 296
Query: 297 TVSSSNREKA 306
+ R A
Sbjct: 297 SAVGEARGNA 306
>sp|O83048|DPO3B_TREPA DNA polymerase III subunit beta OS=Treponema pallidum (strain
Nichols) GN=dnaN PE=3 SV=1
Length = 371
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 150/302 (49%), Gaps = 12/302 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAV---GYG 64
EK A L + ++ K I SN+L+ ++ +TDT+V T V G
Sbjct: 6 EKEAFLKEISTAQEVISNKKNTSIFSNVLLAAQGALLTIRATDTKVTFETSIPVNVLAEG 65
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSK--FTLQTLDAKEYPIMT 122
++ V K ++++ +LP T+++ + + + + I K F L+TL + +P
Sbjct: 66 TTT----VFCDKLVNVVSALP-TKEIELTLCEEQLVITPPNKKISFQLRTLSHESFPCFP 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
N + L+ ++N F++++ R+++NG+ + FQ NII VS+DG RL Y
Sbjct: 121 QNEG-GVSLAVPTSDLRNMINHTVFAVSEDSTRHFINGVHVDFQYGNIICVSTDGKRLAY 179
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLID 242
+ + S S +I+P K + + R L E V L I++ + F + S LI+
Sbjct: 180 IEKKGESSPQSFSGVIVPTKILGIVNRKL-TPEGSVTLCITSQHVYFFFGGYKFSSVLIE 238
Query: 243 GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSN 302
G+F +YK VI + E+SF V R +L+ +L+R+S++ K + + I+ L ++ +
Sbjct: 239 GQFPNYKRVIPDHQERSFCVGRVELMEALKRVSLLVEQKSHRIFITIQQGLLTLSSKAHT 298
Query: 303 RE 304
+E
Sbjct: 299 QE 300
>sp|P05649|DPO3B_BACSU DNA polymerase III subunit beta OS=Bacillus subtilis (strain 168)
GN=dnaN PE=3 SV=1
Length = 378
Score = 118 bits (295), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 161/306 (52%), Gaps = 12/306 (3%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
+K+ ++ +Q V+ V + +PIL+ I + + + +SF +D+++ I ++ G+
Sbjct: 6 QKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDDGVSFTGSDSDISIESFIPKEEGDKE 65
Query: 68 I-------NIIVAARKFIDILRSLPETEKVTIYIENKHM-FIKSGKSKFTLQTLDAKEYP 119
I +I++ AR F +I++ LP V I ++N+++ I+SGK++F L LDA EYP
Sbjct: 66 IVTIEQPGSIVLQARFFSEIVKKLP-MATVEIEVQNQYLTIIRSGKAEFNLNGLDADEYP 124
Query: 120 IMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
+ ++ + LK ++ F+++ + R L G+ ++ ++ ++D HR
Sbjct: 125 HLPQIEEH-HAIQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWKVEQSELLCTATDSHR 183
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L + +D +++IP K++ L ++L++ + V++ I+ Q+ N+ S+
Sbjct: 184 LALRKAKLDIPEDRSYNVVIPGKSLTELSKILDDNQELVDIVITETQVLFKAKNVLFFSR 243
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKG-VRLVIKPNYLKITV 298
L+DG + D +I + +VN + L+++ R S+++ + V+L KP I +
Sbjct: 244 LLDGNYPDTTSLIPQDSKTEIIVNTKEFLQAIDRASLLAREGRNNVVKLSAKPAE-SIEI 302
Query: 299 SSSNRE 304
SS++ E
Sbjct: 303 SSNSPE 308
>sp|Q9RCA1|DPO3B_BACHD DNA polymerase III subunit beta OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=dnaN PE=3 SV=1
Length = 380
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 144/268 (53%), Gaps = 12/268 (4%)
Query: 23 VEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN-------SSINIIVAAR 75
V + +PIL+ I + + E ++ +D+++ I T+ + G+ +I++ A+
Sbjct: 21 VSSRTTIPILTGIKIVADHEGVTLTGSDSDISIETFIPLEEGDRQNVEVKQEGSIVLQAK 80
Query: 76 KFIDILRSLPETEKVTIYIENKHMF-IKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLS 134
F +I++ LPE E + I++++ + I+SG S F L LD EYP + + + D F L
Sbjct: 81 VFAEIVKKLPEQE-IEIHVQDSFVTTIRSGSSVFNLNGLDPDEYPRLPVLEE-DHVFRLP 138
Query: 135 QKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSC 194
QK LK I+ F+++ Q+ R L G+ + + ++D HRL +V ++K
Sbjct: 139 QKILKDIIRQTVFAVSTQETRPVLTGVNFEIEDGILTCTATDSHRLAMRKVPVEKNDDEL 198
Query: 195 --SDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVI 252
S+++IP K++ L ++L+ E +++ ++ NQ N+ S+L++GK+ K +I
Sbjct: 199 QFSNVVIPGKSLNELSKILDENEELLDIVVTENQTLFKLKNMLFFSRLLEGKYPVTKNMI 258
Query: 253 SNKYEKSFLVNRNKLLRSLQRISIISND 280
+ + SF V+ L++L+R ++S +
Sbjct: 259 PKEAKTSFAVHTKAFLQTLERALLLSRE 286
>sp|Q1RIS7|DPO3B_RICBR DNA polymerase III subunit beta OS=Rickettsia bellii (strain
RML369-C) GN=dnaN PE=3 SV=1
Length = 379
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/308 (27%), Positives = 156/308 (50%), Gaps = 7/308 (2%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
L V E ++ L S+VEK+NI+ L+NI + + ST+ ++ ++ V
Sbjct: 2 LKVIVETKTLVQALGFASSVVEKRNIISELANIKLLAKDGLLELSSTNMDLYLSQKIGVQ 61
Query: 63 YGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
+ + V+ + DI++ LP++E + + I +F L TL + +P+M
Sbjct: 62 VVSEG-ELTVSTKTLNDIVKKLPDSELTLTDLGTTGLEITGKNCRFNLFTLPVESFPVMD 120
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTY 182
N + F +S I+ FS++ + RY LNG+ L + A S+DGHRL+
Sbjct: 121 -NINPEASFKISCAEFAKIIESTKFSVSLDETRYNLNGIYLHVKDSEFYAASTDGHRLSV 179
Query: 183 YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENP---VELKISNNQIKIIFS-NIEIIS 238
V + +K +I+P+K+ + +++++ +N +E+ +S+N+IK I + N+ ++S
Sbjct: 180 SSVVLAEKIEDFG-VILPQKSAEEILKIVKDSKNANADIEILLSSNKIKFICNENVIMLS 238
Query: 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
KLIDG F DY I ++NR +++RI+II+ +K + V+L + L+I+
Sbjct: 239 KLIDGTFPDYSSFIPENSSSKLVINRKIFADTIERIAIITVEKFRAVKLSLSGEALEISA 298
Query: 299 SSSNREKA 306
R A
Sbjct: 299 IGEARGNA 306
>sp|Q9PKW4|DPO3B_CHLMU DNA polymerase III subunit beta OS=Chlamydia muridarum (strain MoPn
/ Nigg) GN=dnaN PE=3 SV=1
Length = 366
Score = 105 bits (261), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 151/301 (50%), Gaps = 11/301 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYT- 59
M+ V++ +N + + ++ V ++V + +P+L+++L+ ++++ F +TD V
Sbjct: 1 MKFVIS--RNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRCVVK 58
Query: 60 AVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP 119
A Y + S+ I +R+F ++R L E + I SG S F L ++ +++P
Sbjct: 59 AKVYESGSVTI--PSRRFFQLIRELTEANIEVAANSGEMATITSGSSCFRLLSMGKEDFP 116
Query: 120 IMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
++ + + FTL + LK + F++++++ RY L G+LLS + V +DG R
Sbjct: 117 MLP-DMQNALRFTLDSEQLKDMFQRTSFAVSREESRYVLTGVLLSISNGTMTVVGTDGKR 175
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIF--SNIEII 237
L NI S D IIP K V + ++ V+ I +Q KI N ++
Sbjct: 176 LAKIDTNISLDPSFSGDYIIPIKAV---EEIIRMASEDVQSTIFLDQTKIAVECGNTLLV 232
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
+KL+ G+F D+ VIS + ++R +L+ L+++++ +N+ V+ P L +T
Sbjct: 233 TKLLSGEFPDFSPVISTQSSVQLNLHREELISLLKQVALFTNESSHSVKFSFSPGELTLT 292
Query: 298 V 298
Sbjct: 293 A 293
>sp|P0A023|DPO3B_STAAW DNA polymerase III subunit beta OS=Staphylococcus aureus (strain
MW2) GN=dnaN PE=3 SV=1
Length = 377
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 131/272 (48%), Gaps = 9/272 (3%)
Query: 16 LQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQIT-TYTAVGYGNSSINI---- 70
L + + + LPIL+ I + ++ +D+E+ I T G +NI
Sbjct: 15 LNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKTVDGEDIVNISETG 74
Query: 71 --IVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
++ R F+DI++ LP + E I SG S+F L LD +YP++ S+ D
Sbjct: 75 SVVLPGRFFVDIIKKLPGKDVKLSTNEQFQTLITSGHSEFNLSGLDPDQYPLLPQVSRDD 134
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
LS K LK ++ F+++ + R L G+ Q+ +I ++D HRL ++ +
Sbjct: 135 -AIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENELICTATDSHRLAVRKLQL- 192
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ S ++IIP K + L +++ + E +++ ++NQ+ N+ IS+L++G + D
Sbjct: 193 EDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKVGNVNFISRLLEGHYPDT 252
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISND 280
+ YE ++ + ++ R S+++ +
Sbjct: 253 TRLFPENYEIKLSIDNGEFYHAIDRASLLARE 284
>sp|P0A024|DPO3B_STAAU DNA polymerase III subunit beta OS=Staphylococcus aureus GN=dnaN
PE=3 SV=1
Length = 377
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 131/272 (48%), Gaps = 9/272 (3%)
Query: 16 LQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQIT-TYTAVGYGNSSINI---- 70
L + + + LPIL+ I + ++ +D+E+ I T G +NI
Sbjct: 15 LNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKTVDGEDIVNISETG 74
Query: 71 --IVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
++ R F+DI++ LP + E I SG S+F L LD +YP++ S+ D
Sbjct: 75 SVVLPGRFFVDIIKKLPGKDVKLSTNEQFQTLITSGHSEFNLSGLDPDQYPLLPQVSRDD 134
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
LS K LK ++ F+++ + R L G+ Q+ +I ++D HRL ++ +
Sbjct: 135 -AIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENELICTATDSHRLAVRKLQL- 192
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ S ++IIP K + L +++ + E +++ ++NQ+ N+ IS+L++G + D
Sbjct: 193 EDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKVGNVNFISRLLEGHYPDT 252
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISND 280
+ YE ++ + ++ R S+++ +
Sbjct: 253 TRLFPENYEIKLSIDNGEFYHAIDRASLLARE 284
>sp|Q6GD88|DPO3B_STAAS DNA polymerase III subunit beta OS=Staphylococcus aureus (strain
MSSA476) GN=dnaN PE=3 SV=1
Length = 377
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 131/272 (48%), Gaps = 9/272 (3%)
Query: 16 LQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQIT-TYTAVGYGNSSINI---- 70
L + + + LPIL+ I + ++ +D+E+ I T G +NI
Sbjct: 15 LNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKTVDGEDIVNISETG 74
Query: 71 --IVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
++ R F+DI++ LP + E I SG S+F L LD +YP++ S+ D
Sbjct: 75 SVVLPGRFFVDIIKKLPGKDVKLSTNEQFQTLITSGHSEFNLSGLDPDQYPLLPQVSRDD 134
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
LS K LK ++ F+++ + R L G+ Q+ +I ++D HRL ++ +
Sbjct: 135 -AIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENELICTATDSHRLAVRKLQL- 192
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ S ++IIP K + L +++ + E +++ ++NQ+ N+ IS+L++G + D
Sbjct: 193 EDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKVGNVNFISRLLEGHYPDT 252
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISND 280
+ YE ++ + ++ R S+++ +
Sbjct: 253 TRLFPENYEIKLSIDNGEFYHAIDRASLLARE 284
>sp|Q6GKU3|DPO3B_STAAR DNA polymerase III subunit beta OS=Staphylococcus aureus (strain
MRSA252) GN=dnaN PE=3 SV=1
Length = 377
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 131/272 (48%), Gaps = 9/272 (3%)
Query: 16 LQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQIT-TYTAVGYGNSSINI---- 70
L + + + LPIL+ I + ++ +D+E+ I T G +NI
Sbjct: 15 LNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKTVDGEDIVNISETG 74
Query: 71 --IVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
++ R F+DI++ LP + E I SG S+F L LD +YP++ S+ D
Sbjct: 75 SVVLPGRFFVDIIKKLPGKDVKLSTNEQFQTLITSGHSEFNLSGLDPDQYPLLPQVSRDD 134
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
LS K LK ++ F+++ + R L G+ Q+ +I ++D HRL ++ +
Sbjct: 135 -AIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENELICTATDSHRLAVRKLQL- 192
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ S ++IIP K + L +++ + E +++ ++NQ+ N+ IS+L++G + D
Sbjct: 193 EDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKVGNVNFISRLLEGHYPDT 252
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISND 280
+ YE ++ + ++ R S+++ +
Sbjct: 253 TRLFPENYEIKLSIDNGEFYHAIDRASLLARE 284
>sp|P99103|DPO3B_STAAN DNA polymerase III subunit beta OS=Staphylococcus aureus (strain
N315) GN=dnaN PE=1 SV=1
Length = 377
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 131/272 (48%), Gaps = 9/272 (3%)
Query: 16 LQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQIT-TYTAVGYGNSSINI---- 70
L + + + LPIL+ I + ++ +D+E+ I T G +NI
Sbjct: 15 LNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKTVDGEDIVNISETG 74
Query: 71 --IVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
++ R F+DI++ LP + E I SG S+F L LD +YP++ S+ D
Sbjct: 75 SVVLPGRFFVDIIKKLPGKDVKLSTNEQFQTLITSGHSEFNLSGLDPDQYPLLPQVSRDD 134
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
LS K LK ++ F+++ + R L G+ Q+ +I ++D HRL ++ +
Sbjct: 135 -AIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENELICTATDSHRLAVRKLQL- 192
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ S ++IIP K + L +++ + E +++ ++NQ+ N+ IS+L++G + D
Sbjct: 193 EDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKVGNVNFISRLLEGHYPDT 252
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISND 280
+ YE ++ + ++ R S+++ +
Sbjct: 253 TRLFPENYEIKLSIDNGEFYHAIDRASLLARE 284
>sp|P0A022|DPO3B_STAAM DNA polymerase III subunit beta OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=dnaN PE=1 SV=1
Length = 377
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 131/272 (48%), Gaps = 9/272 (3%)
Query: 16 LQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQIT-TYTAVGYGNSSINI---- 70
L + + + LPIL+ I + ++ +D+E+ I T G +NI
Sbjct: 15 LNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKTVDGEDIVNISETG 74
Query: 71 --IVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
++ R F+DI++ LP + E I SG S+F L LD +YP++ S+ D
Sbjct: 75 SVVLPGRFFVDIIKKLPGKDVKLSTNEQFQTLITSGHSEFNLSGLDPDQYPLLPQVSRDD 134
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
LS K LK ++ F+++ + R L G+ Q+ +I ++D HRL ++ +
Sbjct: 135 -AIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENELICTATDSHRLAVRKLQL- 192
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ S ++IIP K + L +++ + E +++ ++NQ+ N+ IS+L++G + D
Sbjct: 193 EDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKVGNVNFISRLLEGHYPDT 252
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISND 280
+ YE ++ + ++ R S+++ +
Sbjct: 253 TRLFPENYEIKLSIDNGEFYHAIDRASLLARE 284
>sp|Q5HJZ4|DPO3B_STAAC DNA polymerase III subunit beta OS=Staphylococcus aureus (strain
COL) GN=dnaN PE=3 SV=1
Length = 377
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 131/272 (48%), Gaps = 9/272 (3%)
Query: 16 LQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQIT-TYTAVGYGNSSINI---- 70
L + + + LPIL+ I + ++ +D+E+ I T G +NI
Sbjct: 15 LNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKTVDGEDIVNISETG 74
Query: 71 --IVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYD 128
++ R F+DI++ LP + E I SG S+F L LD +YP++ S+ D
Sbjct: 75 SVVLPGRFFVDIIKKLPGKDVKLSTNEQFQTLITSGHSEFNLSGLDPDQYPLLPQVSRDD 134
Query: 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID 188
LS K LK ++ F+++ + R L G+ Q+ +I ++D HRL ++ +
Sbjct: 135 -AIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENELICTATDSHRLAVRKLQL- 192
Query: 189 KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDY 248
+ S ++IIP K + L +++ + E +++ ++NQ+ N+ IS+L++G + D
Sbjct: 193 EDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKVGNVNFISRLLEGHYPDT 252
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISND 280
+ YE ++ + ++ R S+++ +
Sbjct: 253 TRLFPENYEIKLSIDNGEFYHAIDRASLLARE 284
>sp|O84078|DPO3B_CHLTR DNA polymerase III subunit beta OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=dnaN PE=3 SV=1
Length = 416
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 156/306 (50%), Gaps = 15/306 (4%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYT- 59
M+ V++ +N + + ++ V ++V + +P+L+++L+ ++++ F +TD V
Sbjct: 51 MKFVIS--RNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRCVVK 108
Query: 60 AVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP 119
A Y + S+ I +R+F ++R L E + I SG S F L ++ +++P
Sbjct: 109 AKVYESGSVTI--PSRRFFQLIRELTEANIEVAAHSGEMATITSGSSCFRLLSMGKEDFP 166
Query: 120 IMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
++ + + FTL + LK + F++++++ RY L G+LLS + V +DG R
Sbjct: 167 MLP-DMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSIANGTMTVVGTDGKR 225
Query: 180 LTY--YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIF--SNIE 235
L ++++D FS D IIP K V + ++ V+ I +Q KI N
Sbjct: 226 LAKIDTEISLDPSFS--GDYIIPIKAV---EEIIRMSSEDVQSTIFLDQTKIAVECGNTL 280
Query: 236 IISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLK 295
+++KL+ G+F D+ VIS ++R +L+ L+++++ +N+ V+ P L
Sbjct: 281 LVTKLLSGEFPDFSPVISTHSSVQLDLHREELISLLKQVALFTNESSHSVKFSFSPGELT 340
Query: 296 ITVSSS 301
+T + +
Sbjct: 341 LTANCT 346
>sp|Q8CQK6|DPO3B_STAES DNA polymerase III subunit beta OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=dnaN PE=3 SV=1
Length = 377
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 131/277 (47%), Gaps = 9/277 (3%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
++ ++ L + + + LPIL+ I + ++ +D+E+ I I
Sbjct: 8 RDYFINQLNDTLKAISPRTTLPILTGIKIDAKENEVILTGSDSEISIEITIPKQVDGEEI 67
Query: 69 -------NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIM 121
++++ R F+DI++ LP E E I SG S+F L LD +YP++
Sbjct: 68 VEITETGSVVLPGRFFVDIIKKLPGKEVKLSTNEQFQTLITSGHSEFNLSGLDPDQYPLL 127
Query: 122 TLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLT 181
S+ D LS K LK I+ F+++ + R L G+ Q +I ++D HRL
Sbjct: 128 PEVSRDD-AIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQDNELICTATDSHRLA 186
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
++ ++ + S ++IIP K + L +++ + + +++ ++NQ+ NI IS+L+
Sbjct: 187 VRKLQLEDE-SENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRVGNINFISRLL 245
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIIS 278
+G + D + YE +N ++ R S+++
Sbjct: 246 EGHYPDTTRLFPENYEIKLGINNGDFYHAIDRASLLA 282
>sp|Q5HK00|DPO3B_STAEQ DNA polymerase III subunit beta OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=dnaN PE=3 SV=1
Length = 377
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 131/277 (47%), Gaps = 9/277 (3%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
++ ++ L + + + LPIL+ I + ++ +D+E+ I I
Sbjct: 8 RDYFINQLNDTLKAISPRTTLPILTGIKIDAKENEVILTGSDSEISIEITIPKQVDGEEI 67
Query: 69 -------NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIM 121
++++ R F+DI++ LP E E I SG S+F L LD +YP++
Sbjct: 68 VEITETGSVVLPGRFFVDIIKKLPGKEVKLSTNEQFQTLITSGHSEFNLSGLDPDQYPLL 127
Query: 122 TLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLT 181
S+ D LS K LK I+ F+++ + R L G+ Q +I ++D HRL
Sbjct: 128 PEVSRDD-AIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQDNELICTATDSHRLA 186
Query: 182 YYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLI 241
++ ++ + S ++IIP K + L +++ + + +++ ++NQ+ NI IS+L+
Sbjct: 187 VRKLQLEDE-SENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRVGNINFISRLL 245
Query: 242 DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIIS 278
+G + D + YE +N ++ R S+++
Sbjct: 246 EGHYPDTTRLFPENYEIKLGINNGDFYHAIDRASLLA 282
>sp|Q9Z8K0|DPO3B_CHLPN DNA polymerase III subunit beta OS=Chlamydia pneumoniae GN=dnaN
PE=3 SV=2
Length = 366
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 160/304 (52%), Gaps = 11/304 (3%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYT- 59
M+ VV+ +N + + ++ + S+V + +P+L+++L+ ++++ F +TD V T
Sbjct: 1 MKFVVS--RNELGNLIKKIQSVVPQNTPIPVLTHVLIETYNDELVFTATDLTVSTRCVTK 58
Query: 60 AVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP 119
A Y +I+I +++F +++ L E + I SG S F L +++ +++P
Sbjct: 59 AKVYEKGAISI--PSKRFFQLVKELTEANLEISSSAGEMAQITSGSSCFRLLSMEKEDFP 116
Query: 120 IMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
++ + + F+L + LK +L F++++++ RY L G+LL+ V +DG R
Sbjct: 117 MLP-DIQNALRFSLPAEQLKTMLQRTSFAVSREESRYVLTGVLLAIANGVATIVGTDGKR 175
Query: 180 LTY--YQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEII 237
L +V +DK FS + IIP K V + ++ + E + + ++I + N +I
Sbjct: 176 LAKIDAEVTLDKSFS--GEYIIPIKAVEEIIKMCSD-EGEATIFLDQDKIAVECDNTLLI 232
Query: 238 SKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
+KL+ G+F D+ VIS + ++R +L+ L+++++ +N+ V+ P L +T
Sbjct: 233 TKLLSGEFPDFSPVISTESNVKLDLHREELITLLKQVALFTNESSHSVKFSFLPGELTLT 292
Query: 298 VSSS 301
+ +
Sbjct: 293 ANCT 296
>sp|P59651|DPO3B_STRR6 DNA polymerase III subunit beta OS=Streptococcus pneumoniae (strain
ATCC BAA-255 / R6) GN=dnaN PE=3 SV=1
Length = 378
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 154/302 (50%), Gaps = 14/302 (4%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
KN L L + + KN +PILS + + +E ++ + ++ ++ I + + ++ +
Sbjct: 8 KNLFLQALNITKRAISSKNAIPILSTVKIDVTNEGVTLIGSNGQISIENFISQKNEDAGL 67
Query: 69 ------NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP-IM 121
+I++ A FI+++ SLP+ IE + + SGKS+ TL+ D+++YP I
Sbjct: 68 LITSLGSILLEASFFINVVSSLPDVTLDFKEIEQNQIVLTSGKSEITLKGKDSEQYPRIQ 127
Query: 122 TLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGL--LLSFQKKNIIAVSSDGHR 179
+++ L K LK I+N F+ + Q+ R L G+ +LS Q K + V++D HR
Sbjct: 128 EISAST--PLILETKLLKKIINETAFAASTQESRPILTGVHFVLS-QHKELKTVATDSHR 184
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L+ ++ ++K S D++IP +++ + + VE+ +NNQI NI ++
Sbjct: 185 LSQKKLTLEKN-SDDFDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSENISFYTR 243
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKG-VRLVIKPNYLKITV 298
L++G + D +I + + N L +S++R ++S+ G V+L IK + V
Sbjct: 244 LLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEIKDGVVSAHV 303
Query: 299 SS 300
S
Sbjct: 304 HS 305
>sp|O06672|DPO3B_STRPN DNA polymerase III subunit beta OS=Streptococcus pneumoniae
serotype 4 (strain ATCC BAA-334 / TIGR4) GN=dnaN PE=1
SV=2
Length = 378
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 153/302 (50%), Gaps = 14/302 (4%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
KN L L + KN +PILS + + +E I+ + ++ ++ I + + ++ +
Sbjct: 8 KNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNGQISIENFISQKNEDAGL 67
Query: 69 ------NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP-IM 121
+I++ A FI+++ SLP+ IE + + SGKS+ TL+ D+++YP I
Sbjct: 68 LITSLGSILLEASFFINVVSSLPDVTLDFKEIEQNQIVLTSGKSEITLKGKDSEQYPRIQ 127
Query: 122 TLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGL--LLSFQKKNIIAVSSDGHR 179
+++ L K LK I+N F+ + Q+ R L G+ +LS Q K + V++D HR
Sbjct: 128 EISAST--PLILETKLLKKIINETAFAASTQESRPILTGVHFVLS-QHKELKTVATDSHR 184
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239
L+ ++ ++K S D++IP +++ + + VE+ +NNQI NI ++
Sbjct: 185 LSQKKLTLEKN-SDDFDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSENISFYTR 243
Query: 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKG-VRLVIKPNYLKITV 298
L++G + D +I + + N L +S++R ++S+ G V+L IK + V
Sbjct: 244 LLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEIKDGVVSAHV 303
Query: 299 SS 300
S
Sbjct: 304 HS 305
>sp|P52023|DPO3B_SYNE7 DNA polymerase III subunit beta OS=Synechococcus elongatus (strain
PCC 7942) GN=dnaN PE=3 SV=1
Length = 375
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 144/294 (48%), Gaps = 9/294 (3%)
Query: 16 LQMVISIVEKKNILPILSNILVCKNS--EKISFLSTDTEVQITTYTAVGYGNSSINIIVA 73
L +V V + P+L+N+L+ ++ +++S + D + I T A S I +
Sbjct: 14 LSLVSRAVPSRPNHPVLANVLLAADAGTQRLSLTAFDLSLGIQTSFAAQVERSGA-ITLP 72
Query: 74 ARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTL 133
A+ DI+ LP VT+ + + G ++ ++ + A E+P + L + L
Sbjct: 73 AKLLNDIVSRLPNDSDVTLEDNDAAATLSVGSGQYQMRGISADEFPELPLVQSQE-ALQL 131
Query: 134 SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV-NIDKKFS 192
S L L F+ + + + L G+ L Q + ++DGHRL + N +
Sbjct: 132 SASALIEGLRGTLFATSGDETKQILTGVHLKVQPDGLEFAATDGHRLAVVKTENAAATPA 191
Query: 193 SCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIE--IISKLIDGKFLDYKY 250
+ + +P + + L+R++ + + + + ++Q + +F + + S+ +DG++ +Y
Sbjct: 192 TEFAVTVPSRALRDLERMIAIRGSDEAIALYHDQGQTVFQWGDQYLTSRTLDGQYPNYGQ 251
Query: 251 VISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKP--NYLKITVSSSN 302
+I ++ ++ V+R +LL +L+RI+++++ + +RL + P N L + V + +
Sbjct: 252 LIPREFNRNVAVDRKRLLAALERIAVLADQQNNAIRLSLDPENNRLALAVDAQD 305
>sp|O67725|DPO3B_AQUAE DNA polymerase III subunit beta OS=Aquifex aeolicus (strain VF5)
GN=dnaN PE=3 SV=1
Length = 363
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 139/271 (51%), Gaps = 11/271 (4%)
Query: 24 EKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRS 83
EKK LPIL+N L+ E + +TD E + + G + V ++K DI+++
Sbjct: 22 EKKAALPILANFLLSAKEENLIVRATDLENYLVV-SVKGEVEEEGEVCVHSQKLYDIVKN 80
Query: 84 LPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILN 143
L + V ++ E + + I GKS + L T A+++P + TLS L +
Sbjct: 81 L-NSAYVYLHTEGEKLVITGGKSTYKLPTAPAEDFP--EFPEIVEGGETLSGNLLVNGIE 137
Query: 144 MVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKT 203
V ++IA+++ L G+ L + I V SDGHRL Y+ +FS +++IPRK+
Sbjct: 138 KVEYAIAKEEANIALQGMYLRGYEDRIHFVGSDGHRLALYEPL--GEFSK--ELLIPRKS 193
Query: 204 VFTLQRLLENKENPVELKISNNQIKIIFSNIE--IISKLIDGKFLDYKYVISNKYEKSFL 261
+ L++L+ E+ V ++ S ++ FS E + +L++G+F DY VI ++ L
Sbjct: 194 LKVLKKLITGIED-VNIEKSEDESFAYFSTPEWKLAVRLLEGEFPDYMSVIPEEFSAEVL 252
Query: 262 VNRNKLLRSLQRISIISNDKLKGVRLVIKPN 292
++L+ L+R+ +S K+ V++ + N
Sbjct: 253 FETEEVLKVLKRLKALSEGKVFPVKITLSEN 283
>sp|P24117|DPO3B_MYCCT DNA polymerase III subunit beta OS=Mycoplasma capricolum subsp.
capricolum (strain California kid / ATCC 27343 / NCTC
10154) GN=dnaN PE=3 SV=2
Length = 375
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 140/282 (49%), Gaps = 12/282 (4%)
Query: 11 AILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAV-GYGNSSIN 69
+L L +++ KN+ P LS I + +++++ ++T I ++ ++ NS +
Sbjct: 9 VLLDNLSKAAKVIDYKNVNPSLSGIYLNVLNDQVNVITTSG---ILSFKSILNNQNSDLE 65
Query: 70 I------IVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTL 123
+ ++ + +++LR L + V +E+ + IK+ S F++ L++++YP++
Sbjct: 66 VKQEGKVLLKPKYVLEMLRRLDDEFVVFSMVEDNELIIKTNNSDFSIGVLNSEDYPLIGF 125
Query: 124 NSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
K EF L+ K +K + V+ S+ + + + L GL L I ++D R++
Sbjct: 126 REK-GIEFNLNPKEVKKTIYQVFVSMNENNKKLILTGLNLKLNNNQAIFSTTDSFRISQK 184
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDG 243
+ I + DI IP KT L +LL+N EN +++ I I I N+ S LIDG
Sbjct: 185 ILEIQSDNNEDIDITIPFKTALELPKLLDNAEN-LKIIIVEGYITFIIDNVIFQSNLIDG 243
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGV 285
KF + + K+E V + +L+ L R ++++D L +
Sbjct: 244 KFPNVQIAFPTKFETIITVKQKSILKVLSRFDLVADDGLPAI 285
>sp|P52620|DPO3B_VIBHA DNA polymerase III subunit beta (Fragment) OS=Vibrio harveyi
GN=dnaN PE=3 SV=1
Length = 145
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E++ ++ PLQ V + + LPIL N+L+ +S +TD EV++ + + +
Sbjct: 6 ERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELVSKVTLEGDFEA 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
+I V +RKF+DI R LP+ +T +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GSITVPSRKFLDICRGLPDDSIITFVLEGDRVQVRSGRSRFSLATLPANDFPNIE-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFS 148
+ E +L+Q L+ ++ FS
Sbjct: 125 EVEVSLTQSDLRTLIEKTQFS 145
>sp|P34029|DPO3B_SPICI DNA polymerase III subunit beta OS=Spiroplasma citri GN=dnaN PE=3
SV=1
Length = 363
Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 161/318 (50%), Gaps = 25/318 (7%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG 62
++VN +++ IL L V I+ +K ++P L IL+ +KI+F ++D + I +
Sbjct: 1 MIVNIKRDKILDELLKVSRIISQKTLIPSLLGILIEVKKDKITFTTSDGDTSIKSEI--- 57
Query: 63 YGN----SSINIIVAARKFI-DILRSLPETEKVTI-YIENKHMFIKSGKSKFTLQTLDAK 116
GN + I ++ KFI +++R + E E +T+ +E + IK+ L TL++
Sbjct: 58 MGNDLNITRIGSVLIKNKFIVEVIRKI-EDEFITLEVVEGNLIKIKANNFDSVLNTLNSA 116
Query: 117 EYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN--IIAVS 174
+YP ++ ++ E + LK I++ F+I +++ R NGL + + N +I +
Sbjct: 117 DYPHLSFETEGK-EIIFTSTVLKEIISQTSFAIGEKEKRIVFNGLNIKTDQNNKELIITA 175
Query: 175 SDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNI 234
+D RL+ +++ ++ D+IIP K + + RL+ + EL + I
Sbjct: 176 TDSFRLSCKKIDYSNNYN--FDVIIPGKFINEIGRLISENDQVSEL---------LLIII 224
Query: 235 EIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYL 294
K+I+GK+ D VI + S +N +++ ++R S++SN+ + + + +K
Sbjct: 225 NCKQKIIEGKYPDTSKVIRTSFNTSLTINNRAIIKIIERRSVLSNETMTTI-VTLKIKEQ 283
Query: 295 KITVSSSNREKASSTDLI 312
K+ V+S +E ++ + I
Sbjct: 284 KVLVTSFTQEIGNTEEEI 301
>sp|O54376|DPO3B_LACLM DNA polymerase III subunit beta OS=Lactococcus lactis subsp.
cremoris (strain MG1363) GN=dnaN PE=3 SV=1
Length = 380
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 148/305 (48%), Gaps = 18/305 (5%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
K A + L++ + K +P L+ + + + I+ + ++ ++ I + ++S+
Sbjct: 8 KTAFQNALKITKQAIGSKVTIPALTKLKIEVEEKGITLIGSNGQISIKNFLPADNKDASM 67
Query: 69 ------NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
++++ A F +++ LPE I E K + + SGKS+ TL+ LD++ YP +
Sbjct: 68 LISGTGSVLLEAAFFENVVSQLPEVTLEFIEKEQKQVLLTSGKSEITLKGLDSEIYPHLQ 127
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL-SFQKKNIIAVSSDGHRLT 181
S+ + K LK I F+++ Q+ R G+ L + + AV++D HR++
Sbjct: 128 EISEGS-SLKMKVKVLKEIFTETVFAVSTQENRPIFTGVHLETLSTGELKAVATDSHRMS 186
Query: 182 YYQV---NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
+ + D KF D+I+P K++ + + + N E +E+ IS +Q+ I S
Sbjct: 187 QRLLPLEDTDLKF----DVILPSKSINSFKNVFTNDEEEIEIFISGSQMLFQNETISYYS 242
Query: 239 KLIDGKFLDYKYVISNK--YEKSFLVNRNKLLRSLQRISIISNDKLKG-VRLVIKPNYLK 295
+LI+G + D +I N+ Y + + +L ++ R +++ G V+L + + +
Sbjct: 243 RLIEGSYPDTNRLIPNEADYTLDLVFDAAQLRHTMDRARLLTVMTTNGTVKLTVSGDSVV 302
Query: 296 ITVSS 300
T +S
Sbjct: 303 TTANS 307
>sp|Q9CJJ1|DPO3B_LACLA DNA polymerase III subunit beta OS=Lactococcus lactis subsp. lactis
(strain IL1403) GN=dnaN PE=3 SV=1
Length = 380
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 148/305 (48%), Gaps = 18/305 (5%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
KNA + L++ + K +P L+ + + I+ + ++ ++ I + V ++S+
Sbjct: 8 KNAFQNALRITKQAIGSKVTIPALTKLKIEVEENGITLIGSNGQISIKNFLPVDNKDASM 67
Query: 69 ------NIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMT 122
++++ A F +++ LPE E K + + SGKS+ TL+ LD++ YP +
Sbjct: 68 LISGTGSVLLEAAFFENVVSQLPEVTLEFTEKEQKQVLLTSGKSEITLKGLDSEIYPHLQ 127
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLL-SFQKKNIIAVSSDGHRLT 181
S+ + K LK I F+++ Q+ R G+ L + + AV++D HR++
Sbjct: 128 EISEGS-SLKMKVKVLKEIFTETVFAVSTQENRPIFTGVHLETLSTGELKAVATDSHRMS 186
Query: 182 YYQVNIDK---KFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIIS 238
+ ++ KF D+I+P K++ + + + N E +E+ IS +Q+ I S
Sbjct: 187 QRLLPLEDSELKF----DVILPSKSINSFKNVFTNDEEEIEIFISGSQMLFRNETISYYS 242
Query: 239 KLIDGKFLDYKYVISNK--YEKSFLVNRNKLLRSLQRISIISNDKLKG-VRLVIKPNYLK 295
+LI+G + D +I N+ Y + + +L ++ R +++ G V+L + + +
Sbjct: 243 RLIEGSYPDTNRLIPNEADYTLDLVFDAAQLRHTMDRARLLTVMTTNGTVKLTVSGDSVV 302
Query: 296 ITVSS 300
T +S
Sbjct: 303 TTANS 307
>sp|P72856|DPO3B_SYNY3 DNA polymerase III subunit beta OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=dnaN PE=3 SV=1
Length = 391
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 140/289 (48%), Gaps = 27/289 (9%)
Query: 16 LQMVISIVEKKNILPILSNILVCKNSEK--ISFLSTDTEVQI-TTYTAVGYGNSSINIIV 72
L +V V + P+L N+L+ +++K + + D + I +++TA S I +
Sbjct: 14 LSLVSRAVSSRPTHPVLGNVLLEADADKNYLRLTAFDLSLGIQSSFTA--DVQQSGRITL 71
Query: 73 AARKFIDILRSLPETEKVTIYIE------NKHMF-IKSGKSKFTLQTLDAKEYPIMTLNS 125
A+ DI+ LP+ + +T+ I+ + H+ I S +F ++ LDA ++P +
Sbjct: 72 PAKLLNDIVSRLPDGD-ITLAIDPDGDAGDSHLTTITSESGRFQIRGLDADDFPALPTVE 130
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY-- 183
L TL L F+ + + + L G+ + ++ ++DGHRL
Sbjct: 131 GVK-PLLLPVATLNEGLRGALFAASTDETKQVLTGVHIKGSGDSLEFAATDGHRLAVVEA 189
Query: 184 --QVNIDKKFS--SCSD-----IIIPRKTVFTLQRLLENKENP--VELKISNNQIKIIFS 232
Q+ D+ + + SD + IP + + L+R++ ++ N V L +++ Q+
Sbjct: 190 PTQIENDEGEAVITGSDLADFAVTIPARALRELERMVASQGNSDLVSLVVNDTQVIFELG 249
Query: 233 NIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDK 281
+ + S+ ++G + Y +I ++ ++ + R +L+ SL+R+S++++ K
Sbjct: 250 DQRLTSRKLEGAYPAYDQLIPRQFSRTVTMERKRLITSLERVSVLADQK 298
>sp|Q9ZLX4|DPO3B_HELPJ DNA polymerase III subunit beta OS=Helicobacter pylori (strain J99)
GN=dnaN PE=3 SV=1
Length = 374
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 154/315 (48%), Gaps = 24/315 (7%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
++ KN + + L+ + + ++KK+ I S+I + EK+ ++D+++ + +Y +
Sbjct: 3 ISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYISTQST 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP-IMTL 123
+ + +KF+DI+ L ++ + + ++ + IK KS F L DA E+P +
Sbjct: 63 DKEGVGTINGKKFLDIISCLKDS-NIVLETKDDSLVIKQNKSSFKLPMFDADEFPEFPVI 121
Query: 124 NSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN--IIAVSSDGHRLT 181
+ K E ++ L + I Q + L G+L+ F +K+ + V +D RL+
Sbjct: 122 DPKVSLE--INAPFLVDAFKKIAPVIEQTSHKRELAGVLMQFNQKHQTLSVVGTDTKRLS 179
Query: 182 YYQVNIDKKFSSCSDI--IIPRKTVFTLQRLL-EN---KENPVELKISNNQIKIIFSNIE 235
Y Q+ S+ DI I+P++ + + +L EN K + + L + N+ F+
Sbjct: 180 YTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGM-LAVVENETHAFFT--- 235
Query: 236 IISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVI-KPNYL 294
KLIDG + DY+ ++ +Y SF + + + ++ S +S+ ++L + K N L
Sbjct: 236 ---KLIDGNYPDYQKILPKEYTSSFTLGKEEFKEGIKLCSSLSS----TIKLTLEKNNAL 288
Query: 295 KITVSSSNREKASST 309
++ S + E A ++
Sbjct: 289 FESLDSEHSETAKTS 303
>sp|O25242|DPO3B_HELPY DNA polymerase III subunit beta OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=dnaN PE=3 SV=1
Length = 374
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 155/315 (49%), Gaps = 24/315 (7%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
++ KN + + L+ + + ++KK+ I S+I + EK+ ++D+++ + +Y
Sbjct: 3 ISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQSS 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP-IMTL 123
+ + +KF+DI+ L ++ + + ++ + IK KS F L DA E+P +
Sbjct: 63 DKEGVGTINGKKFLDIISCLKDS-NIILETKDDSLAIKQNKSSFKLPMFDADEFPEFPVI 121
Query: 124 NSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKN--IIAVSSDGHRLT 181
+ K E ++ L + I Q + L G+L+ F +K+ + V +D RL+
Sbjct: 122 DPKVSIE--VNAPFLVDAFKKIAPVIEQTSHKRELAGILMQFDQKHQTLSVVGTDTKRLS 179
Query: 182 YYQVNIDKKFSSCSDI--IIPRKTVFTLQRLL-EN---KENPVELKISNNQIKIIFSNIE 235
Y Q+ S+ DI I+P++ + + +L EN K + + L + N++ F+
Sbjct: 180 YTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGM-LAVIENEMHTFFT--- 235
Query: 236 IISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVI-KPNYL 294
KLIDG + DY+ ++ +Y SF + + + S++ S +S+ ++L + K N L
Sbjct: 236 ---KLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSS----TIKLTLEKNNAL 288
Query: 295 KITVSSSNREKASST 309
++ S + E A ++
Sbjct: 289 FESLDSEHSETAKTS 303
>sp|Q9L7L6|DPO3B_MYCPA DNA polymerase III subunit beta OS=Mycobacterium paratuberculosis
(strain ATCC BAA-968 / K-10) GN=dnaN PE=3 SV=1
Length = 399
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/293 (18%), Positives = 132/293 (45%), Gaps = 22/293 (7%)
Query: 26 KNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLP 85
+ +P+LS +L+ E ++ D EV A S +++V+ R DI+R+LP
Sbjct: 36 RPAVPVLSGVLLSGTDEGLTISGFDYEVSAEAQVAAEI-ASPGSVLVSGRLLSDIVRALP 94
Query: 86 ETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMV 145
+ + Y++ + + G ++F+L T+ ++YP TL + + TL + V
Sbjct: 95 -NKPIDFYVDGNRVALNCGSARFSLPTMAVEDYP--TLPTLPEETGTLPADLFAEAIGQV 151
Query: 146 YFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSD-----IIIP 200
+ + D L G+ + ++ ++D RL ++ +S+ S +++P
Sbjct: 152 AIAAGRDDTLPMLTGIRVEISGDTVVLAATDRFRLAVRELT----WSAASPDIEAAVLVP 207
Query: 201 RKTVFTLQRLLENKENPVELKIS-------NNQIKIIFSNIEIISKLIDGKFLDYKYVIS 253
KT+ R + + V L + + + I + ++L+D +F ++ ++
Sbjct: 208 AKTLAEAARTGIDGSD-VRLSLGAGAGVGKDGLLGISGNGKRSTTRLLDAEFPKFRQLLP 266
Query: 254 NKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
++ +N +L +++ +++++ D+ VR+ L+++ + + +A
Sbjct: 267 AEHTAVATINVAELTEAIKLVALVA-DRGAQVRMEFSEGSLRLSAGADDVGRA 318
>sp|P52851|DPO3B_MYCSM DNA polymerase III subunit beta OS=Mycobacterium smegmatis GN=dnaN
PE=3 SV=1
Length = 397
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/296 (16%), Positives = 135/296 (45%), Gaps = 28/296 (9%)
Query: 26 KNILPILSNILVCKNSEKISFLSTD----TEVQITTYTAVGYGNSSINIIVAARKFIDIL 81
+ +P+L+ +L+ E ++ D EV+++ A S+ +++V+ R DI
Sbjct: 34 RPTIPVLAGVLLTGTDEGLTISGFDYEVSAEVKVSAEIA-----SAGSVLVSGRLLSDIT 88
Query: 82 RSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCI 141
++LP + V + +E + + G ++F+L TL ++YP L + + ++
Sbjct: 89 KALP-AKPVEVSVEGTRVSLTCGSARFSLPTLAVEDYP--ALPALPEETGVIASDLFAEA 145
Query: 142 LNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSD----I 197
+ V + + D L G+ + ++++ ++D RL ++ ++ D +
Sbjct: 146 IGQVAVAAGRDDTLPMLTGIRVEISGESVVLAATDRFRLAVRELTW---VTTAGDVEAAV 202
Query: 198 IIPRKTVFTLQRLLENKENPVELKISNNQ-------IKIIFSNIEIISKLIDGKFLDYKY 250
++P KT+ + + N V L + + + I ++L+D +F ++
Sbjct: 203 LVPAKTLAEAAKAGTDG-NQVHLALGSGASVGKDGLLGIRSEGKRSTTRLLDAEFPKFRQ 261
Query: 251 VISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
++ ++ + +L +++R+++++ D+ +R+ + LK++ + + +A
Sbjct: 262 LLPAEHTAVATIGVAELTEAIKRVALVA-DRGAQIRMEFSDDTLKLSAGADDVGRA 316
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,772,281
Number of Sequences: 539616
Number of extensions: 3918875
Number of successful extensions: 11989
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 11808
Number of HSP's gapped (non-prelim): 121
length of query: 314
length of database: 191,569,459
effective HSP length: 117
effective length of query: 197
effective length of database: 128,434,387
effective search space: 25301574239
effective search space used: 25301574239
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)