Query psy13355
Match_columns 314
No_of_seqs 137 out of 1483
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 17:20:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t0p_A DNA polymerase III, bet 100.0 4.4E-68 1.5E-72 493.4 39.9 306 1-313 2-310 (371)
2 3d1g_A DNA polymerase III subu 100.0 5.4E-67 1.9E-71 485.7 40.7 308 1-313 1-309 (366)
3 2avt_A DNA polymerase III beta 100.0 2.8E-66 9.4E-71 482.9 43.5 306 1-312 2-317 (378)
4 3p16_A DNA polymerase III subu 100.0 9.8E-67 3.4E-71 488.1 38.7 305 1-313 19-331 (408)
5 1vpk_A DNA polymerase III, bet 100.0 6E-61 2E-65 447.8 42.6 306 1-312 13-319 (378)
6 1vpk_A DNA polymerase III, bet 99.9 1.8E-23 6.2E-28 194.6 24.0 178 128-312 12-195 (378)
7 3aiz_C DNA polymerase sliding 99.9 8.6E-24 3E-28 185.7 19.1 162 134-311 7-179 (246)
8 3k4x_A PCNA, proliferating cel 99.9 1.8E-22 6.3E-27 203.5 27.4 274 5-311 410-723 (798)
9 1rwz_A DNA polymerase sliding 99.9 2.9E-23 9.9E-28 182.2 16.7 159 134-308 7-174 (245)
10 1iz5_A Proliferating cell nucl 99.9 1.2E-22 4.1E-27 178.7 17.9 162 134-311 9-180 (249)
11 1ud9_A DNA polymerase sliding 99.9 8.6E-23 2.9E-27 179.2 16.0 161 134-311 7-177 (245)
12 2ijx_A DNA polymerase sliding 99.9 1E-22 3.5E-27 178.6 15.9 152 152-311 16-177 (244)
13 3aiz_A DNA polymerase sliding 99.9 3E-22 1E-26 176.0 15.3 153 152-311 17-182 (248)
14 2zvv_A PCNA 1, proliferating c 99.9 5.4E-20 1.8E-24 164.2 21.3 165 130-311 23-203 (276)
15 3t0p_A DNA polymerase III, bet 99.8 2.5E-18 8.6E-23 159.2 29.3 218 6-231 129-352 (371)
16 3d1g_A DNA polymerase III subu 99.8 4.2E-17 1.4E-21 150.8 31.9 218 6-232 129-352 (366)
17 1plq_A Proliferating cell nucl 99.8 5.7E-19 1.9E-23 156.0 18.0 161 134-311 8-183 (258)
18 1u7b_A PCNA, cyclin, prolifera 99.8 9.7E-19 3.3E-23 154.7 18.4 161 134-311 8-183 (261)
19 3fds_D DNA polymerase sliding 99.8 1.1E-18 3.7E-23 153.0 18.5 162 134-311 8-179 (245)
20 3ifv_A PCNA; processivity fact 99.8 9E-19 3.1E-23 153.7 16.5 165 132-311 5-179 (247)
21 2avt_A DNA polymerase III beta 99.8 1E-16 3.4E-21 148.9 28.3 217 6-231 136-361 (378)
22 3p16_A DNA polymerase III subu 99.8 1.1E-16 3.6E-21 149.7 24.9 237 6-252 144-401 (408)
23 3k4x_A PCNA, proliferating cel 99.8 3E-16 1E-20 158.3 26.6 275 4-311 142-456 (798)
24 3lx2_A DNA polymerase sliding 99.7 2.4E-16 8.3E-21 139.1 20.3 161 134-311 9-180 (259)
25 3p91_A Proliferating cell nucl 99.7 1.2E-15 4.2E-20 135.0 21.3 168 129-312 7-189 (265)
26 3aiz_C DNA polymerase sliding 99.5 2.2E-11 7.6E-16 106.4 27.2 209 1-231 1-229 (246)
27 1iz5_A Proliferating cell nucl 99.5 7.1E-11 2.4E-15 103.3 28.5 210 1-231 1-231 (249)
28 1rwz_A DNA polymerase sliding 99.4 9.7E-11 3.3E-15 102.2 22.8 206 1-230 1-224 (245)
29 2ijx_A DNA polymerase sliding 99.4 1.4E-10 4.7E-15 101.1 23.5 202 8-231 7-228 (244)
30 3aiz_A DNA polymerase sliding 99.4 1.6E-10 5.4E-15 101.0 23.1 189 30-231 21-232 (248)
31 2zvv_A PCNA 1, proliferating c 99.4 3.8E-10 1.3E-14 100.3 25.8 203 6-230 25-258 (276)
32 3fds_D DNA polymerase sliding 99.4 6.4E-10 2.2E-14 97.0 25.5 202 8-230 8-228 (245)
33 1ud9_A DNA polymerase sliding 99.3 2.6E-10 9E-15 99.4 20.3 203 8-231 7-228 (245)
34 1plq_A Proliferating cell nucl 99.3 2.9E-09 1E-13 93.5 26.4 202 8-231 8-239 (258)
35 3lx2_A DNA polymerase sliding 99.3 2.6E-09 8.8E-14 94.0 25.4 204 1-226 1-226 (259)
36 1u7b_A PCNA, cyclin, prolifera 99.3 4.5E-09 1.5E-13 92.4 26.7 201 8-230 8-238 (261)
37 3ifv_A PCNA; processivity fact 99.1 1E-08 3.5E-13 89.4 21.3 197 6-226 5-221 (247)
38 3p91_A Proliferating cell nucl 99.1 4.7E-08 1.6E-12 86.1 25.6 198 8-226 13-236 (265)
39 3fds_C DNA polymerase sliding 98.9 3.2E-06 1.1E-10 73.6 26.5 205 6-230 5-232 (249)
40 3fds_C DNA polymerase sliding 98.6 6.7E-06 2.3E-10 71.5 21.1 164 131-311 4-182 (249)
41 3a1j_A Cell cycle checkpoint c 98.4 2.9E-05 9.9E-10 68.2 19.0 211 1-232 1-252 (266)
42 3a1j_C Cell cycle checkpoint p 98.4 0.00032 1.1E-08 61.3 25.4 199 8-226 11-237 (263)
43 1b77_A GP45, protein (sliding 97.9 0.004 1.4E-07 52.3 20.2 188 33-240 19-220 (228)
44 3g65_A Cell cycle checkpoint c 97.7 0.0073 2.5E-07 53.6 19.9 212 1-233 1-253 (296)
45 3a1j_C Cell cycle checkpoint p 97.6 0.0047 1.6E-07 53.9 17.4 160 134-311 11-192 (263)
46 3a1j_A Cell cycle checkpoint c 96.9 0.033 1.1E-06 48.4 15.0 135 160-300 26-182 (266)
47 3a1j_B HHUS1, checkpoint prote 96.6 0.33 1.1E-05 42.5 19.7 207 1-226 2-260 (281)
48 3g65_A Cell cycle checkpoint c 94.2 2.6 9E-05 37.0 23.1 202 80-292 19-254 (296)
49 3a1j_B HHUS1, checkpoint prote 92.4 4.6 0.00016 35.1 14.8 142 160-309 30-205 (281)
50 2ojl_A Hypothetical protein; B 76.9 2.8 9.5E-05 30.9 4.0 50 203-252 28-78 (108)
51 2oka_A Hypothetical protein; P 70.4 6.3 0.00022 28.8 4.6 50 203-252 25-75 (104)
52 1yfb_A Transition state regula 67.2 9.6 0.00033 24.6 4.5 36 66-103 20-55 (59)
53 3dex_A SAV_2001; alpha-beta pr 66.9 5.8 0.0002 29.1 3.7 50 202-252 31-81 (107)
54 2p0g_A Selenoprotein W-related 65.2 6.1 0.00021 28.9 3.6 50 203-252 23-73 (105)
55 2hc5_A ORF 99, hypothetical pr 63.0 19 0.00065 26.8 6.1 53 261-313 34-88 (117)
56 2npb_A Selenoprotein W; struct 59.1 13 0.00043 26.7 4.3 46 204-252 23-73 (96)
57 3iz5_F 60S ribosomal protein L 56.0 79 0.0027 25.5 9.8 142 23-166 4-183 (190)
58 2fa8_A Hypothetical protein AT 54.3 14 0.00049 26.9 4.0 49 203-251 27-76 (105)
59 2zkr_e 60S ribosomal protein L 47.8 91 0.0031 25.2 8.3 141 24-166 5-184 (192)
60 3j21_F 50S ribosomal protein L 47.0 74 0.0025 25.5 7.6 138 27-168 9-179 (184)
61 3u5e_H L8, RP24, YL11, 60S rib 45.9 97 0.0033 25.0 8.2 140 25-166 6-184 (191)
62 2ljk_A Protein C17ORF37; MIEN1 44.1 4.6 0.00016 30.2 -0.1 46 205-252 46-92 (117)
63 2cy5_A Epidermal growth factor 35.8 84 0.0029 24.0 5.9 55 257-313 16-77 (140)
64 1mvf_D MAZE protein, PEMI-like 34.0 83 0.0029 21.2 5.2 37 67-105 12-48 (82)
65 1b77_A GP45, protein (sliding 29.4 2.4E+02 0.0083 23.3 11.8 130 160-301 20-154 (228)
66 2l66_A SSO7C4, transcriptional 27.0 15 0.00053 22.8 0.3 35 66-102 10-44 (53)
67 4a17_E RPL9, 60S ribosomal pro 26.0 1.1E+02 0.0039 24.5 5.4 140 25-166 6-182 (188)
No 1
>3t0p_A DNA polymerase III, beta subunit; DNA clamp, structural genomics, joint center for structural JCSG, protein structure initiative; HET: DNA MSE; 2.26A {Eubacterium rectale}
Probab=100.00 E-value=4.4e-68 Score=493.35 Aligned_cols=306 Identities=24% Similarity=0.421 Sum_probs=289.8
Q ss_pred CeEeEEeehHHHHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEecCeEEEEEEEEeeeeccceEEEEechHHHHH
Q psy13355 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDI 80 (314)
Q Consensus 1 Mk~~~~i~~~~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~atd~~~~~~~~~~~~~~~~~G~~~v~~k~l~~i 80 (314)
||| +|+|+.|.++|+++++++++|++.|+|+||+|++++++|+++|||+++++++++++++. ++|+++||||+|.+|
T Consensus 2 Mkf--~i~r~~L~~~l~~v~~~v~~r~t~pIL~~ili~a~~~~L~ltatD~ei~i~~~i~a~v~-~~G~~~v~ak~l~di 78 (371)
T 3t0p_A 2 MKL--ICSKANLLKGVNIVSKAVPTRTTMAILECILIDASANEIKLMANDMELGIETIIDGTIE-ERGIIALDAKIFSEI 78 (371)
T ss_dssp CEE--EEEHHHHHHHHHHHGGGSCSSCSSGGGGEEEEEESSSSEEEEEECSSEEEEEEECCEEE-ECEEEEEEHHHHHHH
T ss_pred eEE--EEEHHHHHHHHHHHHhhcCCCCChHHhCCEEEEEECCEEEEEEeCcEEEEEEEEEEEEc-cCeEEEEEHHHHHHH
Confidence 999 99999999999999999999999999999999999999999999999999999999987 899999999999999
Q ss_pred HhcCCCCCcEEEEEeCC-EEEEEECCeEEEEecCCCCCCCCCcCCCCCceEEEEeHHHHHHHHhhhccccccccccceee
Q psy13355 81 LRSLPETEKVTIYIENK-HMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLN 159 (314)
Q Consensus 81 ik~l~~~~~v~l~~~~~-~l~I~~g~~~~~l~~~~~~~fP~~~~~~~~~~~~~v~~~~l~~~i~~v~~a~s~~~~~~~l~ 159 (314)
+|+||+++ |+|+.+++ ++.|+||+++|+|+++++++||.+|..+. ...+.+++..|+++|+++.||+|++++||+|+
T Consensus 79 vr~Lp~~~-i~l~~~~~~~l~I~~g~s~f~l~~~~~~dfP~lp~~~~-~~~~~i~~~~L~~~I~~t~fA~s~de~r~~L~ 156 (371)
T 3t0p_A 79 VRKLPDND-VTIETDASFKTVISCEKAKFNIIGKSGDDFSYIPYVER-NESIVLSQFTLKEVIRQTIFSIADNDNNKLMT 156 (371)
T ss_dssp HHHSCSSE-EEEEECTTCEEEEEETTEEEEEECBCGGGSCCCCCCCC-CSEEEEEHHHHHHHHHTTGGGSCSSSSSTGGG
T ss_pred HHhCCCCc-EEEEECCCCeEEEEECCEEEEEccCCHHHCCCCCCCCC-CeEEEECHHHHHHHHhheeEEeeCCCCchhce
Confidence 99999996 99999765 99999999999999999999999999886 67999999999999999999999999999999
Q ss_pred eEEEEEECCEEEEEEeccceEEEEEEecCCCCCCcceEEEehhhHHHHHhhhc-CCCCcEEEEEeCcEEEEEECCEEEEE
Q psy13355 160 GLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLE-NKENPVELKISNNQIKIIFSNIEIIS 238 (314)
Q Consensus 160 gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~~~~~~~~~iip~~~l~~l~k~l~-~~~~~v~i~~~~~~~~~~~~~~~~~~ 238 (314)
||+|+++++.|+++|||||||++++.+++...+ +.+++||+|.+.++.|+|+ +.+++|+|+++++++.|++++.++++
T Consensus 157 Gv~~~~~~~~l~~vATDg~RLa~~~~~~~~~~~-~~~~iIP~k~l~el~kll~~~~~~~V~i~~~~~~i~f~~~~~~~~s 235 (371)
T 3t0p_A 157 GELFEIEENKLRVVSLDGHRISIRYIEMKNHYD-SKKVVVPGKTLQEISKIIPGSADEDVVIYITNNHIVFEFENTTVVS 235 (371)
T ss_dssp EEEEEEEEEEEEEEEECSSEEEEEEEEEEEEEE-EEEEEEEHHHHHHHHHHCCCCTTSEEEEEEETTEEEEEETTEEEEE
T ss_pred EEEEEEECCEEEEEEecceEEEEEEeccCCCCC-ceEEEEEHHHHHHHHHhcCcCCCceEEEEEcCCEEEEEECCEEEEE
Confidence 999999999999999999999999998874323 5789999999999999997 34689999999999999999999999
Q ss_pred EeccccCCCcccccccCcceEEEEehHHHHHHHhHHhhhhcCC-CCeEEEEEECCEEEEEEecCCcceeEEEEeec
Q psy13355 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDK-LKGVRLVIKPNYLKITVSSSNREKASSTDLIY 313 (314)
Q Consensus 239 ~li~g~yP~~~~v~p~~~~~~~~v~~~~l~~al~rv~~~~~~~-~~~v~l~~~~~~l~l~~~~~d~G~a~e~~~~~ 313 (314)
|+++|+||||++++|++++..+.++|.+|++||+|++++++++ ++.|+|++++++|++++.+ |.|+++|++++.
T Consensus 236 rLidG~fPdy~~viP~~~~~~~~v~r~~l~~al~Rvs~ls~e~~~~~V~l~~~~~~l~i~~~~-~~g~a~E~i~~~ 310 (371)
T 3t0p_A 236 RLIEGEYFKIDQMLSSDYDTKVRINKRELLDCIDRATLLVKEGDKKPIIMNITDGNMELRINS-FIGSMNEDIDID 310 (371)
T ss_dssp ECCCSCCCCCGGGCCCCCSEEEEEEHHHHHHHHHHHHTTCCC-CCCCEEEEEETTEEEEEEEC-SSEEEEEEEECE
T ss_pred EEecccCCChhhhccccCCEEEEEEHHHHHHHHHHHHHhhccCCCceEEEEEeCCEEEEEEeC-CCCcEEEEEEEE
Confidence 9999999999999999999999999999999999999999765 5789999999999999986 899999999863
No 2
>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A* 1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 3q4j_A* 3q4k_A* 3qsb_A* 3q4l_A* 2xur_A* 1jql_A* 1jqj_A* 3f1v_A* 3pwe_A*
Probab=100.00 E-value=5.4e-67 Score=485.73 Aligned_cols=308 Identities=34% Similarity=0.596 Sum_probs=292.4
Q ss_pred CeEeEEeehHHHHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEecCeEEEEEEEEe-eeeccceEEEEechHHHH
Q psy13355 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAV-GYGNSSINIIVAARKFID 79 (314)
Q Consensus 1 Mk~~~~i~~~~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~atd~~~~~~~~~~~-~~~~~~G~~~v~~k~l~~ 79 (314)
||| +|+|++|.++|+++++++++|++.|+|+||+|++++++|+++|||+++++++++++ ++. ++|+++||||+|.+
T Consensus 1 Mkf--~i~~~~L~~~l~~v~~~v~~r~t~piL~~ili~a~~~~L~l~atD~ei~i~~~i~~~~v~-~~G~~~v~ak~l~d 77 (366)
T 3d1g_A 1 MKF--TVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPH-EPGATTVPARKFFD 77 (366)
T ss_dssp CEE--EEEHHHHHHHHHHHSTTCSSCCCSGGGGEEEEEEETTEEEEEEECSSEEEEEEEECCSCC-BCEEEEEEHHHHHH
T ss_pred CEE--EEEHHHHHHHHHHHHhhcCCCCChhHhcCeEEEEeCCcEEEEEecceEEEEEEEEcceec-cCeEEEEEhHHHHH
Confidence 999 99999999999999999999999999999999999999999999999999999998 776 89999999999999
Q ss_pred HHhcCCCCCcEEEEEeCCEEEEEECCeEEEEecCCCCCCCCCcCCCCCceEEEEeHHHHHHHHhhhccccccccccceee
Q psy13355 80 ILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLN 159 (314)
Q Consensus 80 iik~l~~~~~v~l~~~~~~l~I~~g~~~~~l~~~~~~~fP~~~~~~~~~~~~~v~~~~l~~~i~~v~~a~s~~~~~~~l~ 159 (314)
|+|+||++.+|+++.+++.+.|+||+++|+|+++++++||.+|..++ ...+.+++..|+++|+++.||+|++++||+|+
T Consensus 78 ivr~Lp~~~~i~~~~~~~~l~I~~g~s~f~l~~~~~~~fP~~~~~~~-~~~~~i~~~~l~~~i~~t~fA~s~de~r~~L~ 156 (366)
T 3d1g_A 78 ICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQS-EVEFTLPQATMKRLIEATQFSMAHQDVRYYLN 156 (366)
T ss_dssp HHHHSCTTCEEEEEEETTEEEEEETTEEEEEECBCGGGSCCCCCCCC-SEEEEECHHHHHHHHHHHGGGSCSSCSSGGGS
T ss_pred HHHcCCCCCcEEEEEeCCEEEEEECCEEEEEcCCCHHHCCCCCCCCC-ceEEEECHHHHHHHHhheeEEeccCCCccceE
Confidence 99999987449999988899999999999999999999999999876 67999999999999999999999999999999
Q ss_pred eEEEEEECCEEEEEEeccceEEEEEEecCCCCCCcceEEEehhhHHHHHhhhcCCCCcEEEEEeCcEEEEEECCEEEEEE
Q psy13355 160 GLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239 (314)
Q Consensus 160 gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~~~~~~~~~iip~~~l~~l~k~l~~~~~~v~i~~~~~~~~~~~~~~~~~~~ 239 (314)
||+|+++++.|+++|||||||++++.+++...+ +.+++||++.+.++.|+|++.+++|+|+++++++.|++++.++++|
T Consensus 157 Gv~~~~~~~~l~~vATDg~RLa~~~~~~~~~~~-~~~~iiP~k~l~el~kll~~~~~~v~i~~~~~~i~f~~~~~~~~sr 235 (366)
T 3d1g_A 157 GMLFETEGEELRTVATDGHRLAVCSMPIGQSLP-SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 (366)
T ss_dssp EEEEEEEEEEEEEEEECSSEEEEEEEEEEEEEE-EEEEEEEHHHHHHHHHTCCSSSCCEEEEECSSEEEEEETTEEEEEE
T ss_pred EEEEEEeCCEEEEEEeCCccEEEEEeccCCCCc-ccEEEEEHHHHHHHHHhcccCCccEEEEEcCCEEEEEECCEEEEEE
Confidence 999999999999999999999999998864322 5799999999999999997545789999999999999999999999
Q ss_pred eccccCCCcccccccCcceEEEEehHHHHHHHhHHhhhhcCCCCeEEEEEECCEEEEEEecCCcceeEEEEeec
Q psy13355 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASSTDLIY 313 (314)
Q Consensus 240 li~g~yP~~~~v~p~~~~~~~~v~~~~l~~al~rv~~~~~~~~~~v~l~~~~~~l~l~~~~~d~G~a~e~~~~~ 313 (314)
+++|+||||++++|++++..+.+++.+|++|++|++++++++++.|+|.+++++|++++.++|.|+++|++++.
T Consensus 236 Lidg~fPdy~~viP~~~~~~~~v~~~~l~~al~Rvsils~~~~~~v~l~~~~~~l~i~a~~~e~g~a~e~l~~~ 309 (366)
T 3d1g_A 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVT 309 (366)
T ss_dssp CCSSCCCCHHHHSCSCCCEEEEEEHHHHHHHHHHHHHTSCTTTCEEEEEEETTEEEEEEECTTCCEEEEEEECB
T ss_pred EecccCCChhhcCCCCCCeEEEEEHHHHHHHHHHHHHHhcCCCceEEEEEeCCEEEEEEcCCCCceEEEEEEEE
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999763
No 3
>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A*
Probab=100.00 E-value=2.8e-66 Score=482.94 Aligned_cols=306 Identities=24% Similarity=0.384 Sum_probs=290.5
Q ss_pred CeEeEEeehHHHHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEecCeEEEEEEEEe-------eeeccceEEEEe
Q psy13355 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAV-------GYGNSSINIIVA 73 (314)
Q Consensus 1 Mk~~~~i~~~~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~atd~~~~~~~~~~~-------~~~~~~G~~~v~ 73 (314)
||| +|+|++|.++|+++++++++|++.|+|+||+|++++++|+++|||+++++++++++ ++. ++|+++||
T Consensus 2 Mkf--~i~~~~L~~~l~~v~~~v~~r~t~PiL~~ill~a~~~~L~ltatD~ei~i~~~i~~~~~~~~~~v~-~~G~~~v~ 78 (378)
T 2avt_A 2 IQF--SINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVSNENAGLLIT-SPGAILLE 78 (378)
T ss_dssp CEE--EEEHHHHHHHHHHHGGGCCSSCSSGGGGEEEEEEETTEEEEEEECSSEEEEEEEEC-----CEEEE-ECEEEEEE
T ss_pred EEE--EEEHHHHHHHHHHHHhhcCCCCChhHhcCeEEEEECCEEEEEEECCeEEEEEEEecccccccceec-cCeEEEEE
Confidence 999 99999999999999999999999999999999999999999999999999999998 555 79999999
Q ss_pred chHHHHHHhcCCCCCcEEEEEeC-CEEEEEECCeEEEEecCCCCCCCCCcCCCCCceEEEEeHHHHHHHHhhhccccccc
Q psy13355 74 ARKFIDILRSLPETEKVTIYIEN-KHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQ 152 (314)
Q Consensus 74 ~k~l~~iik~l~~~~~v~l~~~~-~~l~I~~g~~~~~l~~~~~~~fP~~~~~~~~~~~~~v~~~~l~~~i~~v~~a~s~~ 152 (314)
||.|.+|+|+||+++ |+|+.++ +.+.|+||+++|+|+++++++||.+|..++ ...+.+++..|+++|+++.||+|++
T Consensus 79 ak~l~divr~Lp~~~-v~~~~~~~~~l~I~~g~s~f~l~~~~~~~fP~l~~~~~-~~~~~i~~~~l~~~i~~t~fA~s~d 156 (378)
T 2avt_A 79 ASFFINIISSLPDIS-INVKEIEQHQVVLTSGKSEITLKGKDVDQYPRLQEVST-ENPLILKTKLLKSIIAETAFAASLQ 156 (378)
T ss_dssp HHHHHHHHHHCSSSE-EEEEEETTTEEEEEETTEEEEEECBCGGGSCCCCCCCC-SSCEEEEHHHHHHHHHHHGGGSCCC
T ss_pred hHHHHHHHHhCCCCc-EEEEECCCCEEEEEECCEEEEEccCCHHHCCCCCCCCC-CeEEEECHHHHHHHHhheEEEEECC
Confidence 999999999999985 9999875 489999999999999999999999999876 5789999999999999999999999
Q ss_pred cccceeeeEEEEEECC-EEEEEEeccceEEEEEEecCCCCCCcceEEEehhhHHHHHhhhcCCCCcEEEEEeCcEEEEEE
Q psy13355 153 DIRYYLNGLLLSFQKK-NIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIF 231 (314)
Q Consensus 153 ~~~~~l~gv~l~~~~~-~l~~~aTDg~Rl~~~~~~~~~~~~~~~~~iip~~~l~~l~k~l~~~~~~v~i~~~~~~~~~~~ 231 (314)
++||+|+||+|+++++ .|+++|||||||++++.+++...+ +.+++||++.+.++.|+|++.+++|+|+++++++.|++
T Consensus 157 e~r~~L~Gv~~~~~~~~~l~~vATDg~RLa~~~~~~~~~~~-~~~~iiP~k~l~el~kll~~~~~~v~i~~~~~~i~f~~ 235 (378)
T 2avt_A 157 ESRPILTGVHIVLSNHKDFKAVATDSHRMSQRLITLDNTSA-DFMVVLPSKSLREFSAVFTDDIETVEVFFSPSQILFRS 235 (378)
T ss_dssp TTSGGGGEEEEEEETTTEEEEEEECSSEEEEEEEECSSCCC-CEEEEEEHHHHHHHHHHSCTTCCEEEEEECSSEEEEEC
T ss_pred CCcceeEEEEEEECCCCeEEEEEecCeeEEEEEeccCCCCC-ccEEEEEhHHHHHHHHhcccCCceEEEEEcCCEEEEEE
Confidence 9999999999999999 999999999999999999875333 67999999999999999985457899999999999999
Q ss_pred CCEEEEEEeccccCCCcccccccCcceEEEEehHHHHHHHhHHhhhhcC-CCCeEEEEEECCEEEEEEecCCcceeEEEE
Q psy13355 232 SNIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISND-KLKGVRLVIKPNYLKITVSSSNREKASSTD 310 (314)
Q Consensus 232 ~~~~~~~~li~g~yP~~~~v~p~~~~~~~~v~~~~l~~al~rv~~~~~~-~~~~v~l~~~~~~l~l~~~~~d~G~a~e~~ 310 (314)
++.++++|+++|+||||++++|.+++..+.+++.+|++||+|+++++++ +++.|+|.+++++|++++.++|.|+++|++
T Consensus 236 ~~~~~~srLidg~fPdy~~viP~~~~~~~~v~~~~l~~al~Rvs~ls~~~~~~~v~l~~~~~~l~l~a~~~e~g~a~e~l 315 (378)
T 2avt_A 236 EHISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQNHISAHVNSPEVGKVNEDL 315 (378)
T ss_dssp SSEEEEEECCCSCCCCCGGGSCCCCSEEEEEEHHHHHHHHHHHHHHHTTSTTCCEEEEEETTEEEEEEEETTTEEEEEEC
T ss_pred CCEEEEEEEecccCCChhhcCCCCCCEEEEEEHHHHHHHHHHHHHHhccCCCceEEEEEeCCEEEEEEeCCCCceeEEEE
Confidence 9999999999999999999999999999999999999999999999987 778999999999999999999999999999
Q ss_pred ee
Q psy13355 311 LI 312 (314)
Q Consensus 311 ~~ 312 (314)
++
T Consensus 316 ~~ 317 (378)
T 2avt_A 316 DI 317 (378)
T ss_dssp CC
T ss_pred ee
Confidence 86
No 4
>3p16_A DNA polymerase III subunit beta; DNA polymerase III sliding clamp, transferase; HET: DNA; 2.89A {Mycobacterium tuberculosis} PDB: 3rb9_A*
Probab=100.00 E-value=9.8e-67 Score=488.15 Aligned_cols=305 Identities=15% Similarity=0.296 Sum_probs=289.1
Q ss_pred CeEeEEeehHHHHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEecCeEEEEEEEEeeeeccceEEEEechHHHHH
Q psy13355 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDI 80 (314)
Q Consensus 1 Mk~~~~i~~~~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~atd~~~~~~~~~~~~~~~~~G~~~v~~k~l~~i 80 (314)
||| +|+|+.|+++|+++++++++|++.|+|+||+|++++++|+++|||+++++++++++++. ++|+++||+|+|.+|
T Consensus 19 Mkf--~i~r~~L~~aL~~v~~~v~~r~t~PIL~~ili~a~~~~L~ltatDlei~i~~~i~a~v~-e~G~i~v~ak~l~dI 95 (408)
T 3p16_A 19 LTF--RLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIV-SPGSVLVSGRLLSDI 95 (408)
T ss_dssp CEE--EEEHHHHHHHHHHHTTSSCSCCSSGGGSEEEEEECSSEEEEEECCSSCCEEEEEECCCS-BCEEEEEEHHHHHHH
T ss_pred eEE--EEEHHHHHHHHHHHHhhhCCCCChHHhCcEEEEEECCEEEEEEECCceEEEEEEEEEec-CCeEEEEEHHHHHHH
Confidence 999 99999999999999999999999999999999999999999999999999999999887 899999999999999
Q ss_pred HhcCCCCCcEEEEEeCCEEEEEECCeEEEEecCCCCCCCCCcCCCCCceEEEEeHHHHHHHHhhhccccccccccceeee
Q psy13355 81 LRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNG 160 (314)
Q Consensus 81 ik~l~~~~~v~l~~~~~~l~I~~g~~~~~l~~~~~~~fP~~~~~~~~~~~~~v~~~~l~~~i~~v~~a~s~~~~~~~l~g 160 (314)
+|+||+++ |+|+.+++++.|+||+++|+|+++++++||.+|..+. . .+.+++..|+++|+++.||+|++++||+|+|
T Consensus 96 vr~Lp~~~-I~l~~~~~~l~I~~g~s~f~L~~l~~~dfP~lp~~~~-~-~~~i~~~~L~~~I~~t~fA~s~de~rp~L~G 172 (408)
T 3p16_A 96 TRALPNKP-VDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPTLPE-E-TGLLPAELFAEAISQVAIAAGRDDTLPMLTG 172 (408)
T ss_dssp HHHSCSSE-EEEEEETTEEEEEBTTEEEEEEEECTTTSCCCCCCCC-E-EEEECHHHHHHHHHHHTTSSCCSSSCCCSCE
T ss_pred HHhCCCCc-EEEEEeCCEEEEEECCEEEEEecCCHHHCCCCCCCCC-c-EEEEcHHHHHHHHhhheecccCccchhhceE
Confidence 99999996 9999999999999999999999999999999999875 4 8999999999999999999999999999999
Q ss_pred EEEEEECCEEEEEEeccceEEEEEEecCCCCC-CcceEEEehhhHHHHHhhhcCCCCcEEEEEeCc-------EEEEEEC
Q psy13355 161 LLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFS-SCSDIIIPRKTVFTLQRLLENKENPVELKISNN-------QIKIIFS 232 (314)
Q Consensus 161 v~l~~~~~~l~~~aTDg~Rl~~~~~~~~~~~~-~~~~~iip~~~l~~l~k~l~~~~~~v~i~~~~~-------~~~~~~~ 232 (314)
|+|+++++.|+++|||||||++++.+++...+ .+.+++||+|.+.++.|+|++ +++|+|+++++ ++.|+++
T Consensus 173 v~~~~~~~~l~~VATDghRLA~~~~~~~~~~~~~~~~~iIP~k~l~el~kll~~-~~~V~i~~~~~~~~~~~~~i~f~~~ 251 (408)
T 3p16_A 173 IRVEILGETVVLAATDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIG-GSDVRLSLGTGPGVGKDGLLGISGN 251 (408)
T ss_dssp EEEEEETTEEEEEEECSSEEEEEEEECBCSSSSCEEEEEEEHHHHHHHHHTCCS-SSCEEEESCSSSSCCSSCCCEEECS
T ss_pred EEEEEECCEEEEEEcCcceEEEEeccccccCCCCceeEEEEHHHHHHHHHhcCC-CCcEEEEEcCCcccccceEEEEEEC
Confidence 99999999999999999999999998864322 246899999999999999964 68999999984 8999999
Q ss_pred CEEEEEEeccccCCCcccccccCcceEEEEehHHHHHHHhHHhhhhcCCCCeEEEEEECCEEEEEEecCCcceeEEEEee
Q psy13355 233 NIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASSTDLI 312 (314)
Q Consensus 233 ~~~~~~~li~g~yP~~~~v~p~~~~~~~~v~~~~l~~al~rv~~~~~~~~~~v~l~~~~~~l~l~~~~~d~G~a~e~~~~ 312 (314)
+.++++|+++|+||||++++|++++..+.++|.+|++||+|+++++ ++++.|+|++++++|++++.++|.|+++|++++
T Consensus 252 ~~~~~srLIdG~fPdy~~vIP~~~~~~v~v~r~~l~~al~Rvslls-~~~~~V~l~~~~~~l~i~a~~~e~g~a~E~i~~ 330 (408)
T 3p16_A 252 GKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVA-DRGAQVRMEFADGSVRLSAGADDVGRAEEDLVV 330 (408)
T ss_dssp SEEEECCCCSSCCCCGGGTCCSSCSEEEEEEHHHHHHHHHHHHTTC-CSSCCEEEEEETTEEEEEEECSSSCEEEEEEEC
T ss_pred CEEEEEEecccCCCChhhhCCCCCCEEEEEEHHHHHHHHHHHHhhh-cCCceEEEEEeCCEEEEEEeCCCCceEEEEEEE
Confidence 9999999999999999999999999999999999999999999996 568899999999999999999999999999986
Q ss_pred c
Q psy13355 313 Y 313 (314)
Q Consensus 313 ~ 313 (314)
.
T Consensus 331 ~ 331 (408)
T 3p16_A 331 D 331 (408)
T ss_dssp E
T ss_pred E
Confidence 3
No 5
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomic center for structural genomics, JCSG, protein structure INI PSI, transferase; HET: DNA; 2.00A {Thermotoga maritima} SCOP: d.131.1.1 d.131.1.1 d.131.1.1
Probab=100.00 E-value=6e-61 Score=447.82 Aligned_cols=306 Identities=20% Similarity=0.387 Sum_probs=289.2
Q ss_pred CeEeEEeehHHHHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEecCeEEEEEEEEeeeeccceEEEEechHHHHH
Q psy13355 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDI 80 (314)
Q Consensus 1 Mk~~~~i~~~~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~atd~~~~~~~~~~~~~~~~~G~~~v~~k~l~~i 80 (314)
|+| +|+++.|.++|++++++++++++.|+|+|++|++++++|+++|||+++.++++++++...++|+++||+|.|.++
T Consensus 13 ~~~--~i~~~~L~~~l~~v~~av~~~~t~piL~gvll~~~~~~L~l~aTD~~~~~~~~i~~~~~~~~g~i~vpak~l~ei 90 (378)
T 1vpk_A 13 MKV--TVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAAEISGEARFVVPGDVIQKM 90 (378)
T ss_dssp EEE--EEEHHHHHHHHHHHGGGCCCSSSCGGGGEEEEEEETTEEEEEEECSSEEEEEECCCSEEEECEEEEEEC-CHHHH
T ss_pred EEE--EEEHHHHHHHHHHHHhhcCCCCChhHhCCEEEEEECCEEEEEEEcCceEEEEEEEEEEccCceEEEEEhHHHHHH
Confidence 899 999999999999999999999999999999999999999999999999999999987622689999999999999
Q ss_pred HhcCCCCCcEEEEEeCCEEEEEECCeEEEEecCCCCCCCCCcCCCCCceEEEEeHHHHHHHHhhhccccccccccceeee
Q psy13355 81 LRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNG 160 (314)
Q Consensus 81 ik~l~~~~~v~l~~~~~~l~I~~g~~~~~l~~~~~~~fP~~~~~~~~~~~~~v~~~~l~~~i~~v~~a~s~~~~~~~l~g 160 (314)
+|+||+++ |+|+.+++++.|++|+++|+++++++++||.++..+. ...+.+++..|+++|+++.+|++++++||+|+|
T Consensus 91 ~r~Lp~~~-V~i~~~~~~l~i~~g~~~f~l~~l~~~~fP~~~~~~~-~~~~~i~~~~L~~~I~r~~~a~s~~e~r~~l~G 168 (378)
T 1vpk_A 91 VKVLPDEI-TELSLEGDALVISSGSTVFRITTMPADEFPEITPAES-GITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNG 168 (378)
T ss_dssp HTTCCSSE-EEEEEETTEEEEEETTEEEEEECBCCTTSCCCCCCCS-SEEEEEEHHHHHHHHHHHGGGSCCCTTCTTTSE
T ss_pred HHhCCCCc-EEEEEeCCEEEEEECCEEEEEcccChHHCCCCCCCCC-ceEEEECHHHHHHHHhheEEEEECCCCcceeeE
Confidence 99999875 9999998899999999999999999999999999876 679999999999999999999999999999999
Q ss_pred EEEEEECCEEEEEEeccceEEEEEEecCCCCCCcceEEEehhhHHHHHhhhcCCCC-cEEEEEeCcEEEEEECCEEEEEE
Q psy13355 161 LLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKEN-PVELKISNNQIKIIFSNIEIISK 239 (314)
Q Consensus 161 v~l~~~~~~l~~~aTDg~Rl~~~~~~~~~~~~~~~~~iip~~~l~~l~k~l~~~~~-~v~i~~~~~~~~~~~~~~~~~~~ 239 (314)
|+|+++++.|+++||||||++..+.+++... +.++++|++.+.++.|+|++.++ +|+|+++++++.|++++.+|++|
T Consensus 169 V~l~~~~~~l~~vAtDg~rla~~~~~~~~~~--~~~~iip~k~l~el~k~L~~~~~~~V~i~~~~~~i~f~~~~~~~~sr 246 (378)
T 1vpk_A 169 VFWELHKNLLRLVASDGFRLALAEEQIENEE--EASFLLSLKSMKEVQNVLDNTTEPTITVRYDGRRVSLSTNDVETVMR 246 (378)
T ss_dssp EEEEEETTEEEEEEECSSEEEEEEEECCCCS--CEEEEEEHHHHHHHHHHHHTCCCSEEEEEECSSEEEEECSSEEEEEE
T ss_pred EEEEEECCEEEEEEeCcccEEEEEEecCCCC--cceEEEEchHHHHHHHhhccCCCceEEEEEcCCEEEEEECCEEEEEE
Confidence 9999999999999999999999999887542 47999999999999999985345 89999999999999999999999
Q ss_pred eccccCCCcccccccCcceEEEEehHHHHHHHhHHhhhhcCCCCeEEEEEECCEEEEEEecCCcceeEEEEee
Q psy13355 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASSTDLI 312 (314)
Q Consensus 240 li~g~yP~~~~v~p~~~~~~~~v~~~~l~~al~rv~~~~~~~~~~v~l~~~~~~l~l~~~~~d~G~a~e~~~~ 312 (314)
+++|+||||++++|.+++..+.+++.+|++||+|++++++++++.|+|.+++++|++++.++|.|+++|++++
T Consensus 247 Lidg~fPdy~~vip~~~~~~~~v~~~~l~~al~Rv~~~s~~~~~~v~l~~~~~~l~i~a~~~d~g~a~e~l~~ 319 (378)
T 1vpk_A 247 VVDAEFPDYKRVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMRLVSKSPDYGEVVDEVEV 319 (378)
T ss_dssp CCSSCCCCGGGGSCSCCSEEEEEEHHHHHHHHHHHHHHHTTTTCCEEEEECSSEEEEEEEETTTEEEEEEEEC
T ss_pred eccccCCCHHHhcccCCCeEEEEEHHHHHHHHHHHHHHhcCCCceEEEEEeCCEEEEEEcCCccceeEEEEEE
Confidence 9999999999999999999999999999999999999998878899999999999999999999999999975
No 6
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomic center for structural genomics, JCSG, protein structure INI PSI, transferase; HET: DNA; 2.00A {Thermotoga maritima} SCOP: d.131.1.1 d.131.1.1 d.131.1.1
Probab=99.92 E-value=1.8e-23 Score=194.64 Aligned_cols=178 Identities=17% Similarity=0.252 Sum_probs=155.6
Q ss_pred ceEEEEeHHHHHHHHhhhccccccccccceeeeEEEEEECCEEEEEEeccceEEEEEEecCCCCCCcceEEEehhhHHHH
Q psy13355 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTL 207 (314)
Q Consensus 128 ~~~~~v~~~~l~~~i~~v~~a~s~~~~~~~l~gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~~~~~~~~~iip~~~l~~l 207 (314)
-.+|.++++.|.++|+++.++++.++++|+|+||+|+++++.|+++|||++|.+..+++.+... +++.++||++.+.++
T Consensus 12 ~~~~~i~~~~L~~~l~~v~~av~~~~t~piL~gvll~~~~~~L~l~aTD~~~~~~~~i~~~~~~-~~g~i~vpak~l~ei 90 (378)
T 1vpk_A 12 HMKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAAEIS-GEARFVVPGDVIQKM 90 (378)
T ss_dssp CEEEEEEHHHHHHHHHHHGGGCCCSSSCGGGGEEEEEEETTEEEEEEECSSEEEEEECCCSEEE-ECEEEEEEC-CHHHH
T ss_pred eEEEEEEHHHHHHHHHHHHhhcCCCCChhHhCCEEEEEECCEEEEEEEcCceEEEEEEEEEEcc-CceEEEEEhHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999998875312 267999999999999
Q ss_pred HhhhcCCCCcEEEEEeCcEEEEEECCEEEEEEec-cccCCCcccccccCcceEEEEehHHHHHHHhHHhhhhc-CC----
Q psy13355 208 QRLLENKENPVELKISNNQIKIIFSNIEIISKLI-DGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISN-DK---- 281 (314)
Q Consensus 208 ~k~l~~~~~~v~i~~~~~~~~~~~~~~~~~~~li-~g~yP~~~~v~p~~~~~~~~v~~~~l~~al~rv~~~~~-~~---- 281 (314)
.|.|++ ++|++.++++++.|++++.+|.++++ .++||++..+ +....+.+++.+|.++++|+.++++ ++
T Consensus 91 ~r~Lp~--~~V~i~~~~~~l~i~~g~~~f~l~~l~~~~fP~~~~~---~~~~~~~i~~~~L~~~I~r~~~a~s~~e~r~~ 165 (378)
T 1vpk_A 91 VKVLPD--EITELSLEGDALVISSGSTVFRITTMPADEFPEITPA---ESGITFEVDTSLLEEMVEKVIFAAAKDEFMRN 165 (378)
T ss_dssp HTTCCS--SEEEEEEETTEEEEEETTEEEEEECBCCTTSCCCCCC---CSSEEEEEEHHHHHHHHHHHGGGSCCCTTCTT
T ss_pred HHhCCC--CcEEEEEeCCEEEEEECCEEEEEcccChHHCCCCCCC---CCceEEEECHHHHHHHHhheEEEEECCCCcce
Confidence 999985 67999999999999999999999995 5789988764 4457899999999999999999874 33
Q ss_pred CCeEEEEEECCEEEEEEecCCcceeEEEEee
Q psy13355 282 LKGVRLVIKPNYLKITVSSSNREKASSTDLI 312 (314)
Q Consensus 282 ~~~v~l~~~~~~l~l~~~~~d~G~a~e~~~~ 312 (314)
.++|.|+++++.|+++++|+... |..++++
T Consensus 166 l~GV~l~~~~~~l~~vAtDg~rl-a~~~~~~ 195 (378)
T 1vpk_A 166 LNGVFWELHKNLLRLVASDGFRL-ALAEEQI 195 (378)
T ss_dssp TSEEEEEEETTEEEEEEECSSEE-EEEEEEC
T ss_pred eeEEEEEEECCEEEEEEeCcccE-EEEEEec
Confidence 38999999999999999997765 5555443
No 7
>3aiz_C DNA polymerase sliding clamp C; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_A*
Probab=99.92 E-value=8.6e-24 Score=185.70 Aligned_cols=162 Identities=11% Similarity=0.152 Sum_probs=142.4
Q ss_pred eHHHHHHHHhhhccccccccccceeeeEEEEEECCEEEEEEeccceEEEEEEecCCCCCCcceE---EEehhhHHHHHhh
Q psy13355 134 SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDI---IIPRKTVFTLQRL 210 (314)
Q Consensus 134 ~~~~l~~~i~~v~~a~s~~~~~~~l~gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~~~~~~~~~---iip~~~l~~l~k~ 210 (314)
++..|+++++.+ ||+++|++|++++++|+++||||||++.....++...-.+..+ ++|.+.+.++.|+
T Consensus 7 ~~~~lk~~i~~~---------~~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~i~~~~~l~~l~ki 77 (246)
T 3aiz_C 7 DADAFSYIFRTL---------EEFIDEITLDFTSDGLKIRGIDPSRVTFIDILIPAGYFEEYNVEKEEKVGVKLEDFTDV 77 (246)
T ss_dssp CHHHHHHHHHHH---------TTTCSEEEEEECSSEEEEEEECTTSCEEEEEEEEGGGSSEEECSSCEEEEEEHHHHHHH
T ss_pred cHHHHHHHHHHH---------HHHhcEEEEEEcCCeEEEEEECCCcEEEEEEEEChHhCcEEEcCCCeEEEEEHHHHHHH
Confidence 788899999888 7899999999999999999999999999998886421113333 7899999999999
Q ss_pred hc--CCCCcEEEEEeC-cEEEEEECC---EEEEEEeccccCCCccccccc-CcceEEEEehHHHHHHHhHHhhh-hcCCC
Q psy13355 211 LE--NKENPVELKISN-NQIKIIFSN---IEIISKLIDGKFLDYKYVISN-KYEKSFLVNRNKLLRSLQRISII-SNDKL 282 (314)
Q Consensus 211 l~--~~~~~v~i~~~~-~~~~~~~~~---~~~~~~li~g~yP~~~~v~p~-~~~~~~~v~~~~l~~al~rv~~~-~~~~~ 282 (314)
|+ +.++.|+|.+++ +++.|..++ ..|.+|+++|+||+|+ +|. +++..+.+++.+|+++++|+..+ ++
T Consensus 78 L~~~~~~~~v~i~~~~~~~l~~~~~~~~~~~~~~rlidg~~p~~~--iP~~~~~~~i~i~~~~l~~a~~r~~~l~s~--- 152 (246)
T 3aiz_C 78 LKTVTKNDSLYLETDENQNIKVTLDGVYERTFTFPSIVASEIETP--NLNLEFPFKAKALTVTFTDIIDEIEDIGGD--- 152 (246)
T ss_dssp HTTCCTTCEEEEEECSSSCEEEEEESSSEEEEEECCCCCCCCCCS--CSCCCCSEEEEEEHHHHHHHHHHHHHHCCS---
T ss_pred HhhCCCCCEEEEEECCCCeEEEEEecCcEEEEEEEcccCCcccCC--CCCCcccEEEEEEHHHHHHHHHHHhhCCCC---
Confidence 96 335679999987 599999999 9999999999999999 886 89999999999999999999999 64
Q ss_pred CeEEEEEECCEEEEEEecCCcceeEEEEe
Q psy13355 283 KGVRLVIKPNYLKITVSSSNREKASSTDL 311 (314)
Q Consensus 283 ~~v~l~~~~~~l~l~~~~~d~G~a~e~~~ 311 (314)
.|.|.++++++++++.+ |.|+++|+++
T Consensus 153 -~V~l~~~~~~l~ls~~~-d~g~~~~~l~ 179 (246)
T 3aiz_C 153 -SITFKAEGGKLYLSANS-DMGSSTIELS 179 (246)
T ss_dssp -EEEEEEETTEEEEEEEC-SSCEEEEEEC
T ss_pred -EEEEEEECCEEEEEEEc-CCceEEEEEe
Confidence 39999999999999866 9999999987
No 8
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.8e-22 Score=203.45 Aligned_cols=274 Identities=14% Similarity=0.234 Sum_probs=217.2
Q ss_pred EEeehHHHHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEe----cCeEEEEEEEEee--------eeccceEEEE
Q psy13355 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLST----DTEVQITTYTAVG--------YGNSSINIIV 72 (314)
Q Consensus 5 ~~i~~~~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~at----d~~~~~~~~~~~~--------~~~~~G~~~v 72 (314)
++++++.|.++++.+.. ++. +|.|.+.+++++++|. +.++.+...++.+ ...++|++..
T Consensus 410 ~~i~~~~f~~al~~v~~-vsd--------~Iki~~~~~~l~l~asgd~g~~~i~i~~~i~~~~~~~~~~~~v~e~~~~~f 480 (798)
T 3k4x_A 410 LSLPSSEFSKIVRDLSQ-LSD--------SINIMITKETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTF 480 (798)
T ss_dssp EEEEHHHHHHHHHHHHT-TCS--------EEEEEEETTEEEEEEECSSCEEEEEECCBCCSSSGGGCBEEEESSCEEEEE
T ss_pred EEEEHHHHHHHHHHHHH-hCC--------eEEEEEeCCEEEEEEEecCCceEEEEeeccccCCCcceEEEEcCCceEEEE
Confidence 39999999999999999 443 7999999999999998 4444554333332 1137899999
Q ss_pred echHHHHHHhcCCCCCcEEEEEeC-CEEEEEECCeEEEEecCCCCCCCCCcCCCCCceEEEE-----------e-HHHHH
Q psy13355 73 AARKFIDILRSLPETEKVTIYIEN-KHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTL-----------S-QKTLK 139 (314)
Q Consensus 73 ~~k~l~~iik~l~~~~~v~l~~~~-~~l~I~~g~~~~~l~~~~~~~fP~~~~~~~~~~~~~v-----------~-~~~l~ 139 (314)
+++.|.+++|.+|.++.|+|+..+ ..+.|+ |.+.+ ....||..|.... ...+.+ + +..|+
T Consensus 481 ~~~YL~di~K~l~~s~~V~i~~~~~~Pl~i~-----f~i~g-g~~~y~laPri~~-~~~~~~~~~~~mfea~l~~~~~lk 553 (798)
T 3k4x_A 481 GAKYLLDIIKGSSLSDRVGIRLSSEAPALFQ-----FDLKS-GFLQFFLAPKFND-EGSNSQASNSGALEAKFEEASLFK 553 (798)
T ss_dssp EHHHHHHHGGGGGTCSEEEEEECSSSCEEEE-----EEETT-EEEEEEECCCCC--------------CEEEESSHHHHH
T ss_pred EHHHHHHHHhhcCCCCEEEEEECCCCCEEEE-----EEEcC-cEEEEEEcCCCCC-ccceeeccccceEEEEcCchHHHH
Confidence 999999999999943359999864 457776 77776 6678998898886 667777 7 88899
Q ss_pred HHHhhhccccccccccceeeeEEEEEECCEEEEEEeccceEEEEEEecCCCCCCcc----eEEEehhhHHHHHhhh--cC
Q psy13355 140 CILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCS----DIIIPRKTVFTLQRLL--EN 213 (314)
Q Consensus 140 ~~i~~v~~a~s~~~~~~~l~gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~~~~~~~----~~iip~~~l~~l~k~l--~~ 213 (314)
++++. .++++++++|++++++|.++|+|.||++...+.++...-.+. ++.+ ...+.++.|+| .+
T Consensus 554 ~ii~a---------i~~iv~~~~~~~~~~Gi~~~a~D~s~valv~~~L~~~~F~~y~cd~~i~i-G~nL~~L~kiLk~~~ 623 (798)
T 3k4x_A 554 RIIDG---------FKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTL-GMDLTSLSKILRCGN 623 (798)
T ss_dssp HHHHT---------TTTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGEEEEECSSCEEE-EEEHHHHHHHHHHSC
T ss_pred HHHHH---------HHHHhCcEEEEEECCeEEEEEECCCcEEEEEEEeccccCceEEcCCCeEE-EEEHHHHHHHHhccC
Confidence 98882 678999999999999999999999999999988874320022 4555 66666666666 23
Q ss_pred CCCcEEEEEeCcE--EEEEECCE------EEEEEeccccCCCcccccc-cCcceEEEEehHHHHHHHhHHhhhhcCCCCe
Q psy13355 214 KENPVELKISNNQ--IKIIFSNI------EIISKLIDGKFLDYKYVIS-NKYEKSFLVNRNKLLRSLQRISIISNDKLKG 284 (314)
Q Consensus 214 ~~~~v~i~~~~~~--~~~~~~~~------~~~~~li~g~yP~~~~v~p-~~~~~~~~v~~~~l~~al~rv~~~~~~~~~~ 284 (314)
.++.|+|.++++. +.|..++. .|.+|+++++||+ ..+| .++.+.+.++..+|.++++|+..+++ .
T Consensus 624 ~~d~v~l~~~d~~~~l~~~~e~~~~~~~~~f~lkL~d~~~~~--~~iP~~e~~~~i~m~s~~f~~~~~~l~~~sd----~ 697 (798)
T 3k4x_A 624 NTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADF--LKIEELQYDSTLSLPSSEFSKIVRDLSQLSD----S 697 (798)
T ss_dssp SSSEEEEECCSSCSEEEEEEECSSCCCEEEEEEECCCCCCCC--CCCCCCCCSEEEEEEHHHHHHHHHHHHTTCS----E
T ss_pred CCCEEEEEEcCCCCeEEEEEecCCCceEEEEEEEeecCCCCC--CCCCCccceEEEEEEHHHHHHHHHHHHhcCC----E
Confidence 4678999998765 88887765 8999999999996 6678 57899999999999999999999973 7
Q ss_pred EEEEEECCEEEEEEecCCcceeEEEEe
Q psy13355 285 VRLVIKPNYLKITVSSSNREKASSTDL 311 (314)
Q Consensus 285 v~l~~~~~~l~l~~~~~d~G~a~e~~~ 311 (314)
|.+.+.++++++++.+ |.|++.++++
T Consensus 698 v~i~~~~~~v~~s~~g-d~G~~~~~l~ 723 (798)
T 3k4x_A 698 INIMITKETIKFVADG-DIGSGSVIIK 723 (798)
T ss_dssp EEEEEETTEEEEEEEC-SSCEEEEEEC
T ss_pred EEEEEeCCEEEEEEEc-ccceEEEEec
Confidence 9999999999999987 9999999886
No 9
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A* 3p83_A*
Probab=99.90 E-value=2.9e-23 Score=182.24 Aligned_cols=159 Identities=13% Similarity=0.156 Sum_probs=136.9
Q ss_pred eHHHHHHHHhhhccccccccccceeeeEEEEEECCEEEEEEeccceEEEEEEecCCCCCCcceE---EEehhhHHHHHhh
Q psy13355 134 SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDI---IIPRKTVFTLQRL 210 (314)
Q Consensus 134 ~~~~l~~~i~~v~~a~s~~~~~~~l~gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~~~~~~~~~---iip~~~l~~l~k~ 210 (314)
++..|+++++. .||+++|++|++++++|+++||||||++.....++...-.+..+ ++|.+.+.++.|+
T Consensus 7 ~~~~~~~i~~~---------i~~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~i~~~~~l~el~ki 77 (245)
T 1rwz_A 7 TGELLKTVTRA---------IVALVSEARIHFLEKGLHSRAVDPANVAMVIVDIPKDSFEVYNIDEEKTIGVDMDRIFDI 77 (245)
T ss_dssp EHHHHHHHHHH---------HHTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHH
T ss_pred chHHHHHHHHH---------HHHHhceEEEEEcCCeEEEEEECCCcEEEEEEEEChHhCceEEcCCCeEEEEEHHHHHHH
Confidence 55555555544 46789999999999999999999999999998886421124455 7899999999999
Q ss_pred hc--CCCCcEEEEEeCc-EEEEEECC--EEEEEEeccccCCCccccccc-CcceEEEEehHHHHHHHhHHhhhhcCCCCe
Q psy13355 211 LE--NKENPVELKISNN-QIKIIFSN--IEIISKLIDGKFLDYKYVISN-KYEKSFLVNRNKLLRSLQRISIISNDKLKG 284 (314)
Q Consensus 211 l~--~~~~~v~i~~~~~-~~~~~~~~--~~~~~~li~g~yP~~~~v~p~-~~~~~~~v~~~~l~~al~rv~~~~~~~~~~ 284 (314)
|+ +.++.|+|.++++ ++.|..++ ..|.+|+++|+||+|+ +|. +++..+.+++.+|+++++|+..++++
T Consensus 78 L~~~~~~~~v~i~~~~~~~l~~~~~~~~~~~~~rlidg~~p~~~--iP~~~~~~~v~~~~~~l~~av~r~~~ls~~---- 151 (245)
T 1rwz_A 78 SKSISTKDLVELIVEDESTLKVKFGSVEYKVALIDPSAIRKEPR--IPELELPAKIVMDAGEFKKAIAAADKISDQ---- 151 (245)
T ss_dssp HTTSCTTSEEEEEESSSSEEEEEETTEEEEEECBCGGGSCCCCC--CCCCCCSEEEEEEHHHHHHHHHHHHTTCSE----
T ss_pred HhhCCCCCEEEEEECCCCeEEEEEeeeEEEEEEEccccCccCCC--CCCCcccEEEEEEHHHHHHHHHHHHhcCCE----
Confidence 96 3357899999999 99999999 9999999999999998 886 89999999999999999999999743
Q ss_pred EEEEEECCEEEEEEecCCcceeEE
Q psy13355 285 VRLVIKPNYLKITVSSSNREKASS 308 (314)
Q Consensus 285 v~l~~~~~~l~l~~~~~d~G~a~e 308 (314)
|.|.++++++++++.+ |.|++++
T Consensus 152 V~l~~~~~~l~ls~~~-d~g~~~~ 174 (245)
T 1rwz_A 152 VIFRSDKEGFRIEAKG-DVDSIVF 174 (245)
T ss_dssp EEEEEETTEEEEEEEC-SSCEEEE
T ss_pred EEEEEECCEEEEEEEc-cCcEEEE
Confidence 9999999999999865 9999886
No 10
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A 3lx1_A*
Probab=99.90 E-value=1.2e-22 Score=178.74 Aligned_cols=162 Identities=12% Similarity=0.204 Sum_probs=129.0
Q ss_pred eHHHHHHHHhhhccccccccccceeeeEEEEEECCEEEEEEeccceEEEEEEecCCCCCCcceE---EEehhhHHHHHhh
Q psy13355 134 SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDI---IIPRKTVFTLQRL 210 (314)
Q Consensus 134 ~~~~l~~~i~~v~~a~s~~~~~~~l~gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~~~~~~~~~---iip~~~l~~l~k~ 210 (314)
++..|+++++. .+|+++|++|++++++|+++||||||++.....++...-.+..+ +.|...+.++.|+
T Consensus 9 ~~~~~~~i~~~---------i~~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~~~~~~~l~~l~ki 79 (249)
T 1iz5_A 9 GAKEFAQLIDT---------ASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNLDHLKKI 79 (249)
T ss_dssp CHHHHHHHHHH---------HTSSCSEEEEEECSSEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHH
T ss_pred chHHHHHHHHH---------HHHHhcEEEEEEeCCeEEEEEECCCcEEEEEEEECHHhCcEEEcCCCeEEEEEHHHHHHH
Confidence 55555555544 46789999999999999999999999999998876421112222 4455566666666
Q ss_pred hc--CCCCcEEEEEeCc-EEEEEECC---EEEEEEeccccCCCccccccc-CcceEEEEehHHHHHHHhHHhhhhcCCCC
Q psy13355 211 LE--NKENPVELKISNN-QIKIIFSN---IEIISKLIDGKFLDYKYVISN-KYEKSFLVNRNKLLRSLQRISIISNDKLK 283 (314)
Q Consensus 211 l~--~~~~~v~i~~~~~-~~~~~~~~---~~~~~~li~g~yP~~~~v~p~-~~~~~~~v~~~~l~~al~rv~~~~~~~~~ 283 (314)
|+ +.++.|+|.++++ ++.|..++ ..|.+|+++|+||+|+ +|. +++..+.+++.+|+++++|+..++++
T Consensus 80 l~~~~~~~~v~i~~~~~~~l~f~~~~~~~~~~~~rlidg~~p~~~--iP~~~~~~~v~i~~~~l~~a~~r~~~ls~~--- 154 (249)
T 1iz5_A 80 LKRGKAKDTLILKKGEENFLEITIQGTATRTFRVPLIDVEEMEVD--LPELPFTAKVVVLGEVLKAAVKAASLVSDS--- 154 (249)
T ss_dssp HTTCCTTCEEEEEECSSSEEEEEEESSSEEEEEEECBCCCC-------CCCCCCEEEEEEHHHHHHHHHHHTTTCSE---
T ss_pred HHhCCCCCEEEEEECCCCeEEEEEecCCEEEEEEEcccCCccCCC--CCCCcceEEEEEEHHHHHHHHHHHHhcCCE---
Confidence 65 2356899999998 99999999 9999999999999997 886 89999999999999999999999743
Q ss_pred eEEEEEECCEEEEEEecCCcceeEEEEe
Q psy13355 284 GVRLVIKPNYLKITVSSSNREKASSTDL 311 (314)
Q Consensus 284 ~v~l~~~~~~l~l~~~~~d~G~a~e~~~ 311 (314)
|.|.++++++++++.+ |.|+++|+++
T Consensus 155 -V~l~~~~~~l~ls~~~-d~g~~~~~l~ 180 (249)
T 1iz5_A 155 -IKFIARENEFIMKAEG-ETQEVEIKLT 180 (249)
T ss_dssp -EEEEEETTEEEEEEEC-SSCEEEEEEE
T ss_pred -EEEEEECCEEEEEEEe-cCceEEEEEc
Confidence 9999999999999866 9999999987
No 11
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2
Probab=99.89 E-value=8.6e-23 Score=179.21 Aligned_cols=161 Identities=10% Similarity=0.117 Sum_probs=134.6
Q ss_pred eHHHHHHHHhhhccccccccccceeeeEEEEEECCEEEEEEeccceEEEEEEecCCCCCCcceE---EEehhhHHHHHhh
Q psy13355 134 SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDI---IIPRKTVFTLQRL 210 (314)
Q Consensus 134 ~~~~l~~~i~~v~~a~s~~~~~~~l~gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~~~~~~~~~---iip~~~l~~l~k~ 210 (314)
++..|+++++. .+|+++|++|++++++|+++||||||++.....++...-.+..+ ++|.+.+.++.|+
T Consensus 7 ~~~~~k~i~~~---------i~~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~i~~~~~l~~l~ki 77 (245)
T 1ud9_A 7 DVRDLKAIIQA---------LLKLVDEALFDIKPEGIQLVAIDKAHISLIKIELPKEMFKEYDVPEEFKFGFNTQYMSKL 77 (245)
T ss_dssp CHHHHHHHHHH---------HHHHCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEECSSCEEEEEEHHHHHHH
T ss_pred chHHHHHHHHH---------HHHHhceEEEEEcCCeEEEEEECCCcEEEEEEEEChHhCeEEEcCCCeEEEEEHHHHHHH
Confidence 44555555544 45789999999999999999999999999998886421113333 7899999999999
Q ss_pred hc--CCCCcEEEEEeCc--EEEEEECC--EEEEEEeccccCCCccccccc-CcceEEEEehHHHHHHHhHHhhhhcCCCC
Q psy13355 211 LE--NKENPVELKISNN--QIKIIFSN--IEIISKLIDGKFLDYKYVISN-KYEKSFLVNRNKLLRSLQRISIISNDKLK 283 (314)
Q Consensus 211 l~--~~~~~v~i~~~~~--~~~~~~~~--~~~~~~li~g~yP~~~~v~p~-~~~~~~~v~~~~l~~al~rv~~~~~~~~~ 283 (314)
|+ +.++.|+|.++++ ++.|..++ .++.+|+++|+||+|+ +|. +++..+.+++.+|+++++|+..++++
T Consensus 78 L~~~~~~~~v~i~~~~~~~~l~~~~~~~~~~~~~rlidg~~p~~~--ip~~~~~~~i~i~~~~l~~a~~r~~~~s~~--- 152 (245)
T 1ud9_A 78 LKAAKRKEEIIIDADSPEVVKLTLSGALNRVFNVNNIEVLPPEVP--EVNLEFDIKATINASGLKNAIGEIAEVADT--- 152 (245)
T ss_dssp HTTCCSCCCEEEEEEETTEEEEEECSSSCEEEEEECCCCCCCCCC-----CCCSEEEEEEHHHHHHHHHHHHHHCSE---
T ss_pred HhcCCCCCEEEEEEcCCCCEEEEEECCEEEEEEEECcccCcccCC--CCCCCccEEEEEeHHHHHHHHHHHHhcCCE---
Confidence 96 3356799999988 99999999 9999999999999998 886 89999999999999999999999743
Q ss_pred eEEEEEECCEEEEEEecCCcceeEEEEe
Q psy13355 284 GVRLVIKPNYLKITVSSSNREKASSTDL 311 (314)
Q Consensus 284 ~v~l~~~~~~l~l~~~~~d~G~a~e~~~ 311 (314)
|.|.++++++++++.+ |.|+ +|+++
T Consensus 153 -V~l~~~~~~l~ls~~~-d~g~-~~~l~ 177 (245)
T 1ud9_A 153 -LLISGNEEKVVVKGEG-ENKV-EVEFS 177 (245)
T ss_dssp -EEEEECSSEEEEEESS-SSCC-CEEEE
T ss_pred -EEEEEECCEEEEEEEc-cCce-EEEEe
Confidence 9999999999999855 9999 99986
No 12
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotr binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C*
Probab=99.89 E-value=1e-22 Score=178.63 Aligned_cols=152 Identities=13% Similarity=0.194 Sum_probs=132.3
Q ss_pred ccccceeeeEEEEEECCEEEEEEeccceEEEEEEecCCCCCCcceE---EEehhhHHHHHhhhc--CCCCcEEEEEeC--
Q psy13355 152 QDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDI---IIPRKTVFTLQRLLE--NKENPVELKISN-- 224 (314)
Q Consensus 152 ~~~~~~l~gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~~~~~~~~~---iip~~~l~~l~k~l~--~~~~~v~i~~~~-- 224 (314)
+..+|+++|++|++++++|+++||||||++.....++...-.+..+ ++|.+.+.++.|+|+ +.++.|+|.+++
T Consensus 16 ~~i~~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~i~~~~~l~~l~kiL~~~~~~~~v~i~~~~~~ 95 (244)
T 2ijx_A 16 QALARLVDEAVLKFKQDSVELVALDRAHISLISVNLPREMFKEYDVNDEFKFGFNTQYLMKILKVAKRKEAIEIASESPD 95 (244)
T ss_dssp HHHHHHCSEEEEEECSSEEEEEEECTTSSEEEEEEEEGGGCSEEECSSCEEEEEEHHHHHHHHTTCCSSCEEEEEEEETT
T ss_pred HHHHHHhceEEEEEecCeEEEEEECCCcEEEEEEEECHHhCceEEcCCCEEEEEEHHHHHHHHhhCCCCCEEEEEecCCC
Confidence 3346789999999999999999999999999998886421113343 789999999999996 335679999998
Q ss_pred cEEEEEECC--EEEEEEeccccCCCccccccc-CcceEEEEehHHHHHHHhHHhhhhcCCCCeEEEEEECCEEEEEEecC
Q psy13355 225 NQIKIIFSN--IEIISKLIDGKFLDYKYVISN-KYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301 (314)
Q Consensus 225 ~~~~~~~~~--~~~~~~li~g~yP~~~~v~p~-~~~~~~~v~~~~l~~al~rv~~~~~~~~~~v~l~~~~~~l~l~~~~~ 301 (314)
+++.|..++ .++.+|+++|+||+|+ +|. +++..+.+++.+|+++++|+..++++ |.|.++++++++++. +
T Consensus 96 ~~l~~~~~~~~~~~~~rlidg~~p~~~--iP~~~~~~~i~i~~~~l~~a~~r~~~~s~~----V~l~~~~~~l~ls~~-~ 168 (244)
T 2ijx_A 96 SVIINIIGSTNREFNVRNLEVSEQEIP--EINLQFDISATISSDGFKSAISEVSTVTDN----VVVEGHEDRILIKAE-G 168 (244)
T ss_dssp EEEEEEESSSEEEEEEECCCCCCCCCC--CCCCCCSEEEEEEHHHHHHHHHHHTTTCSE----EEEEEETTEEEEEET-T
T ss_pred CEEEEEECCEEEEEEEECCccCcccCC--CCCCcccEEEEEEHHHHHHHHHHHHhcCCE----EEEEEECCEEEEEEE-e
Confidence 899999999 9999999999999998 886 89999999999999999999999743 999999999999985 4
Q ss_pred CcceeEEEEe
Q psy13355 302 NREKASSTDL 311 (314)
Q Consensus 302 d~G~a~e~~~ 311 (314)
|.|+ +|+++
T Consensus 169 d~g~-~~~l~ 177 (244)
T 2ijx_A 169 ESEV-EVEFS 177 (244)
T ss_dssp CTTS-EEEEE
T ss_pred cCce-EEEEe
Confidence 9999 99986
No 13
>3aiz_A DNA polymerase sliding clamp B; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_B*
Probab=99.88 E-value=3e-22 Score=176.05 Aligned_cols=153 Identities=12% Similarity=0.180 Sum_probs=128.3
Q ss_pred ccccceeeeEEEEEECCEEEEEEeccceEEEEEEecCCCCCCcceE---EEehhhHHHHHhhhcC-CCCcEEEEEeC--c
Q psy13355 152 QDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDI---IIPRKTVFTLQRLLEN-KENPVELKISN--N 225 (314)
Q Consensus 152 ~~~~~~l~gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~~~~~~~~~---iip~~~l~~l~k~l~~-~~~~v~i~~~~--~ 225 (314)
+..+|+++|++|++++++|+++||||||++.....++...-.+..+ +.|...+.++.|+|+. .++.|+|.+++ +
T Consensus 17 ~~i~~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~i~~~~~l~~l~kil~~~~~~~v~i~~~~~~~ 96 (248)
T 3aiz_A 17 SGLLKVTDEIILNFTEDSIFSRYLTDDKVLMVIFKIPKEYLEDYTIDKPLGIKININDLKKILGKAKSKSATVTLEETEA 96 (248)
T ss_dssp TTCTTCCSEEEEEECSSEEEEEEECTTSSEEEEEEEEGGGCEEEECSSCEEEEEEHHHHHHHHHTCSSTTCEEEEEECSS
T ss_pred HHHHHHHheEEEEEccCcEEEEEECCCCEEEEEEEECHHhCceEEcCCCeEEEEEHHHHHHHHhhcCCCEEEEEEeCCCC
Confidence 3456889999999999999999999999999998886421012222 4456666666666653 25679999987 8
Q ss_pred EEEEEECC------EEEEEEeccccCCCccccccc-CcceEEEEehHHHHHHHhHHhhhhcCCCCeEEEEEECCEEEEEE
Q psy13355 226 QIKIIFSN------IEIISKLIDGKFLDYKYVISN-KYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298 (314)
Q Consensus 226 ~~~~~~~~------~~~~~~li~g~yP~~~~v~p~-~~~~~~~v~~~~l~~al~rv~~~~~~~~~~v~l~~~~~~l~l~~ 298 (314)
++.|..++ ..+.+|+++|+||+|+ +|. +++..+.+++.+|+++++|+..++++ |.|.++++++++++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~rlidg~~p~~~--iP~~~~~~~v~~~~~~l~~av~r~~~~s~~----V~i~~~~~~l~ls~ 170 (248)
T 3aiz_A 97 GLKVTVRDEKTGTRSNIYIKGEKTSIDQLT--EPKVNLSVTFTTDGDVLKDIARDLSLVGEE----VEISADENTVTLST 170 (248)
T ss_dssp EEEEEEEETTTTEEEEEEEECEEECCCCCC--CCCCCCSEEEEECHHHHHHHHHHHTTSCSE----EEEEECSSEEEEEE
T ss_pred eEEEEEEeCCCCEEEEEEEEccccCcccCC--CCCCCccEEEEEeHHHHHHHHHHHHhcCCE----EEEEEeCCEEEEEE
Confidence 99999988 9999999999999999 886 89999999999999999999999743 99999999999999
Q ss_pred ecCCcceeEEEEe
Q psy13355 299 SSSNREKASSTDL 311 (314)
Q Consensus 299 ~~~d~G~a~e~~~ 311 (314)
.+ |.|+++|+++
T Consensus 171 ~~-d~g~~~~~~~ 182 (248)
T 3aiz_A 171 EE-AGRTYKSLLK 182 (248)
T ss_dssp EE-TTEEEEEEEE
T ss_pred Ec-cCceEEEEEc
Confidence 85 9999999987
No 14
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A
Probab=99.85 E-value=5.4e-20 Score=164.15 Aligned_cols=165 Identities=14% Similarity=0.183 Sum_probs=140.4
Q ss_pred EEEE-eHHHHHHHHhhhccccccccccceeeeEEEEEECCEEEEEEeccceEEEEEEecCCCC-C-----CcceEEEehh
Q psy13355 130 EFTL-SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF-S-----SCSDIIIPRK 202 (314)
Q Consensus 130 ~~~v-~~~~l~~~i~~v~~a~s~~~~~~~l~gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~~~-~-----~~~~~iip~~ 202 (314)
...+ ++..|+++++. .+++++|++|++++++|+++|||+||++.....++... . .+..+.+|.+
T Consensus 23 ~a~~~~~~~lk~ii~~---------~~~il~~v~~~~~~~gl~~vAtD~~rla~~~~~l~~~~f~~y~~~~~i~~~i~l~ 93 (276)
T 2zvv_A 23 ELRLVQGSLLKKVLES---------IKDLVNDANFDCSSTGFSLQAMDSSHVALVSLLLRSEGFEHYRCDRNLSMGMNLG 93 (276)
T ss_dssp EEEESCTHHHHHHHHH---------HTTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHH
T ss_pred EEEeCChHHHHHHHHH---------HHHHhceEEEEEECCeEEEEEECCCCEEEEEEEEChhhCcEEEcCCCEEEEEEHH
Confidence 4444 78888888888 56789999999999999999999999999998876421 1 1235677777
Q ss_pred hHHHHHhhhcCCCCcEEEEEe--CcEEEEEECC------EEEEEEeccccCCCccccccc-CcceEEEEehHHHHHHHhH
Q psy13355 203 TVFTLQRLLENKENPVELKIS--NNQIKIIFSN------IEIISKLIDGKFLDYKYVISN-KYEKSFLVNRNKLLRSLQR 273 (314)
Q Consensus 203 ~l~~l~k~l~~~~~~v~i~~~--~~~~~~~~~~------~~~~~~li~g~yP~~~~v~p~-~~~~~~~v~~~~l~~al~r 273 (314)
.+.+++|...+ ++.|+|.++ ++.+.|.+++ .+|.+|+++|+||+|. +|. +++..+.+++.+|.++++|
T Consensus 94 ~l~kilk~~~~-~d~v~i~~~~~~~~l~~~~~~~~~~~~~~~~~rLid~~~p~~~--iP~~~~~~~i~~~~~~l~~av~r 170 (276)
T 2zvv_A 94 NMSKMLKCAGN-DDIITIKADDGGDTVTFMFESPTQDKIADFEMKLMDIDSEHLG--IPDAEYHSIVRMPSNEFSRICKD 170 (276)
T ss_dssp HHHHHHHTSCT-TCEEEEEECTTCSEEEEEEECTTSSCEEEEEEECCCEECCCCC--CCCCCCSEEEEEEHHHHHHHHHH
T ss_pred HHHHHHhhCCC-CCeEEEEEcCCCCeEEEEEEeCCCceEEEEEEEcccCCcccCC--CCCCcccEEEEEEHHHHHHHHHH
Confidence 77777776644 568999998 6899999988 8999999999999995 886 8999999999999999999
Q ss_pred HhhhhcCCCCeEEEEEECCEEEEEEecCCcceeEEEEe
Q psy13355 274 ISIISNDKLKGVRLVIKPNYLKITVSSSNREKASSTDL 311 (314)
Q Consensus 274 v~~~~~~~~~~v~l~~~~~~l~l~~~~~d~G~a~e~~~ 311 (314)
+..+++ .|.|.++++++++++. +|.|+++++++
T Consensus 171 ~~~~sd----~V~i~~~~~~l~lsa~-gd~g~~~~~l~ 203 (276)
T 2zvv_A 171 LSSIGD----TVVISVTKEGVKFSTA-GDIGTANIVLR 203 (276)
T ss_dssp HHTTCS----EEEEEEETTEEEEEEE-ETTEEEEEEEC
T ss_pred HHhhCC----EEEEEEeCCEEEEEEE-eeccEEEEEEc
Confidence 999974 4999999999999996 59999999986
No 15
>3t0p_A DNA polymerase III, beta subunit; DNA clamp, structural genomics, joint center for structural JCSG, protein structure initiative; HET: DNA MSE; 2.26A {Eubacterium rectale}
Probab=99.84 E-value=2.5e-18 Score=159.20 Aligned_cols=218 Identities=16% Similarity=0.194 Sum_probs=177.4
Q ss_pred EeehHHHHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEecCeEEEEEEEEeeeeccceEEEEechHHHHHHhcCC
Q psy13355 6 NTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLP 85 (314)
Q Consensus 6 ~i~~~~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~atd~~~~~~~~~~~~~~~~~G~~~v~~k~l~~iik~l~ 85 (314)
+++...|.++++++..+++....+|+|+|++++.++++|++.|||+.+-..++++.+...++..++||+|.+.++.|.++
T Consensus 129 ~i~~~~L~~~I~~t~fA~s~de~r~~L~Gv~~~~~~~~l~~vATDg~RLa~~~~~~~~~~~~~~~iIP~k~l~el~kll~ 208 (371)
T 3t0p_A 129 VLSQFTLKEVIRQTIFSIADNDNNKLMTGELFEIEENKLRVVSLDGHRISIRYIEMKNHYDSKKVVVPGKTLQEISKIIP 208 (371)
T ss_dssp EEEHHHHHHHHHTTGGGSCSSSSSTGGGEEEEEEEEEEEEEEEECSSEEEEEEEEEEEEEEEEEEEEEHHHHHHHHHHCC
T ss_pred EECHHHHHHHHhheeEEeeCCCCchhceEEEEEEECCEEEEEEecceEEEEEEeccCCCCCceEEEEEHHHHHHHHHhcC
Confidence 89999999999999999999999999999999999999999999999877777765443234579999999999999997
Q ss_pred C--CCcEEEEEeCCEEEEEECCeEEEEecCCCCCCCCCcCCC--CCceEEEEeHHHHHHHHhhhccccccccccceeeeE
Q psy13355 86 E--TEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNS--KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGL 161 (314)
Q Consensus 86 ~--~~~v~l~~~~~~l~I~~g~~~~~l~~~~~~~fP~~~~~~--~~~~~~~v~~~~l~~~i~~v~~a~s~~~~~~~l~gv 161 (314)
+ ++.|++..+++++.+++|+..+..+.+++ .||++..+- +....+.+++..|.++++++...+..+.. ++|
T Consensus 209 ~~~~~~V~i~~~~~~i~f~~~~~~~~srLidG-~fPdy~~viP~~~~~~~~v~r~~l~~al~Rvs~ls~e~~~----~~V 283 (371)
T 3t0p_A 209 GSADEDVVIYITNNHIVFEFENTTVVSRLIEG-EYFKIDQMLSSDYDTKVRINKRELLDCIDRATLLVKEGDK----KPI 283 (371)
T ss_dssp CCTTSEEEEEEETTEEEEEETTEEEEEECCCS-CCCCCGGGCCCCCSEEEEEEHHHHHHHHHHHHTTCCC-CC----CCE
T ss_pred cCCCceEEEEEcCCEEEEEECCEEEEEEEecc-cCCChhhhccccCCEEEEEEHHHHHHHHHHHHHhhccCCC----ceE
Confidence 2 33599999999999999999999988864 899997642 24688999999999999999854432222 369
Q ss_pred EEEEECCEEEEEEeccceEEEEEEecCCCCCCcceEEEehhhHHHHHhhhcCCCCcEEEEEeCc--EEEEEE
Q psy13355 162 LLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNN--QIKIIF 231 (314)
Q Consensus 162 ~l~~~~~~l~~~aTDg~Rl~~~~~~~~~~~~~~~~~iip~~~l~~l~k~l~~~~~~v~i~~~~~--~~~~~~ 231 (314)
.|++++|.+.+.|.+-.--+...++++...+ +..+.+..++|.+.++.+.+ ++|.+++.+. -+.++.
T Consensus 284 ~l~~~~~~l~i~~~~~~g~a~E~i~~~~~Ge-~~~I~FN~~yLld~L~~~~~--~~v~l~~~~~~~p~~i~~ 352 (371)
T 3t0p_A 284 IMNITDGNMELRINSFIGSMNEDIDIDKDGK-DIMIGFNPKFFIDALRVIDE--EEVNLYMVNPKAPCFIKD 352 (371)
T ss_dssp EEEEETTEEEEEEECSSEEEEEEEECEEEEC-CEEEEECHHHHHHHHTTCCC--SEEEEEESCTTSCEEEEC
T ss_pred EEEEeCCEEEEEEeCCCCcEEEEEEEEecCC-cEEEEEchHHHHHHHhCCCC--CeEEEEECCCCCcEEEEc
Confidence 9999999999988653333455566653323 68999999999999999974 7899999764 355554
No 16
>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A* 1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 3q4j_A* 3q4k_A* 3qsb_A* 3q4l_A* 2xur_A* 1jql_A* 1jqj_A* 3f1v_A* 3pwe_A*
Probab=99.82 E-value=4.2e-17 Score=150.83 Aligned_cols=218 Identities=13% Similarity=0.168 Sum_probs=179.5
Q ss_pred EeehHHHHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEecCeEEEEEEEEeeeeccceEEEEechHHHHHHhcCC
Q psy13355 6 NTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLP 85 (314)
Q Consensus 6 ~i~~~~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~atd~~~~~~~~~~~~~~~~~G~~~v~~k~l~~iik~l~ 85 (314)
+++...|.++++++..+++....+|+|+|++++.++++|++.|||+.+-..+.++.....++..++||+|.+.++.|.++
T Consensus 129 ~i~~~~l~~~i~~t~fA~s~de~r~~L~Gv~~~~~~~~l~~vATDg~RLa~~~~~~~~~~~~~~~iiP~k~l~el~kll~ 208 (366)
T 3d1g_A 129 TLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLD 208 (366)
T ss_dssp EECHHHHHHHHHHHGGGSCSSCSSGGGSEEEEEEEEEEEEEEEECSSEEEEEEEEEEEEEEEEEEEEEHHHHHHHHHTCC
T ss_pred EECHHHHHHHHhheeEEeccCCCccceEEEEEEEeCCEEEEEEeCCccEEEEEeccCCCCcccEEEEEHHHHHHHHHhcc
Confidence 89999999999999999999999999999999999999999999999877777665332123589999999999999997
Q ss_pred C-CCcEEEEEeCCEEEEEECCeEEEEecCCCCCCCCCcCC--CCCceEEEEeHHHHHHHHhhhccccccccccceeeeEE
Q psy13355 86 E-TEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLN--SKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLL 162 (314)
Q Consensus 86 ~-~~~v~l~~~~~~l~I~~g~~~~~l~~~~~~~fP~~~~~--~~~~~~~~v~~~~l~~~i~~v~~a~s~~~~~~~l~gv~ 162 (314)
+ ++.|.+..+++++.++.|+..+..+.++ +.||++..+ .+....+.+++..|.++++++... +++.. ++|.
T Consensus 209 ~~~~~v~i~~~~~~i~f~~~~~~~~srLid-g~fPdy~~viP~~~~~~~~v~~~~l~~al~Rvsil-s~~~~----~~v~ 282 (366)
T 3d1g_A 209 GGDNPLRVQIGSNNIRAHVGDFIFTSKLVD-GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAIL-SNEKF----RGVR 282 (366)
T ss_dssp SSSCCEEEEECSSEEEEEETTEEEEEECCS-SCCCCHHHHSCSCCCEEEEEEHHHHHHHHHHHHHT-SCTTT----CEEE
T ss_pred cCCccEEEEEcCCEEEEEECCEEEEEEEec-ccCCChhhcCCCCCCeEEEEEHHHHHHHHHHHHHH-hcCCC----ceEE
Confidence 5 3349999999999999999999999886 589998763 224689999999999999999854 44433 4799
Q ss_pred EEEECCEEEEEEeccc-eEEEEEEecCCCCCCcceEEEehhhHHHHHhhhcCCCCcEEEEEeCc--EEEEEEC
Q psy13355 163 LSFQKKNIIAVSSDGH-RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNN--QIKIIFS 232 (314)
Q Consensus 163 l~~~~~~l~~~aTDg~-Rl~~~~~~~~~~~~~~~~~iip~~~l~~l~k~l~~~~~~v~i~~~~~--~~~~~~~ 232 (314)
|.+++|.+.+.|.+.. --+...++++...+ +..+.+..++|.+.++.++. +.|.+++.+. -+.++..
T Consensus 283 l~~~~~~l~i~a~~~e~g~a~e~l~~~~~Ge-~~~I~fN~~YL~d~L~~~~~--~~v~l~~~~~~~p~~i~~~ 352 (366)
T 3d1g_A 283 LYVSENQLKITANNPEQEEAEEILDVTYSGA-EMEIGFNVSYVLDVLNALKC--ENVRMMLTDSVSSVQIEDA 352 (366)
T ss_dssp EEEETTEEEEEEECTTCCEEEEEEECBCCSC-CEEEEEEHHHHHHHHHHCCS--SEEEEEECCTTSCEEEEET
T ss_pred EEEeCCEEEEEEcCCCCceEEEEEEEEecCC-cEEEEEcHHHHHHHHhcCCC--CEEEEEECCCCCCEEEEcC
Confidence 9999999999998743 22555566654333 68999999999999999974 7899999865 5677653
No 17
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity; 2.30A {Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2 PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3v60_B 3v61_B 3v62_B* 3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3pge_B 3l0x_B
Probab=99.82 E-value=5.7e-19 Score=155.97 Aligned_cols=161 Identities=16% Similarity=0.227 Sum_probs=130.5
Q ss_pred eHHHHHHHHhhhccccccccccceeeeEEEEEECCEEEEEEeccceEEEEEEecCCCC-C-----CcceEEEehhhHHHH
Q psy13355 134 SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF-S-----SCSDIIIPRKTVFTL 207 (314)
Q Consensus 134 ~~~~l~~~i~~v~~a~s~~~~~~~l~gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~~~-~-----~~~~~iip~~~l~~l 207 (314)
++..|+++++. .+|+++|++|++++++|+++|||+||++...+.++... . ++..+.+|.+.+..+
T Consensus 8 ~~~~~~~i~~~---------i~~i~~~v~~~~~~~gl~~~a~D~~rla~~~~~l~~~~F~~y~~~~~~~~~i~l~~l~ki 78 (258)
T 1plq_A 8 EASLFKRIIDG---------FKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKI 78 (258)
T ss_dssp SHHHHHHHHHH---------HTTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEECCSSCEEEEEEHHHHHHH
T ss_pred chHHHHHHHHH---------HHHHhceEEEEEcCCceEEEEECCCcEEEEEEEECHHhCcEEEeCCCeEEEEEHHHHHHH
Confidence 45555555544 45788999999999999999999999999998876321 1 113455565555555
Q ss_pred HhhhcCCCCcEEEEEeC--cEEEEEECC------EEEEEEeccccCCCccccccc-CcceEEEEehHHHHHHHhHHhhhh
Q psy13355 208 QRLLENKENPVELKISN--NQIKIIFSN------IEIISKLIDGKFLDYKYVISN-KYEKSFLVNRNKLLRSLQRISIIS 278 (314)
Q Consensus 208 ~k~l~~~~~~v~i~~~~--~~~~~~~~~------~~~~~~li~g~yP~~~~v~p~-~~~~~~~v~~~~l~~al~rv~~~~ 278 (314)
+|...+ ++.|+|.+++ +.+.|..++ .+|.+|+++|+||+|. +|. +++..+.+++.+|.++++|+..++
T Consensus 79 l~~~~~-~d~v~i~~~~~~~~l~~~~~~~~~~~~~~~~~rlie~~~~~~~--ip~~~~~~~i~~~~~~l~~av~r~~~~s 155 (258)
T 1plq_A 79 LRCGNN-TDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLK--IEELQYDSTLSLPSSEFSKIVRDLSQLS 155 (258)
T ss_dssp TTCSTT-TSEEEEEECSSCSEEEEEEECSSSSCEEEEEEECBCCCCCCCC--CCCSCCSEEEEEEHHHHHHHHHHHHTTC
T ss_pred HhcCCC-CCEEEEEecCCCCeEEEEEEcCCCCeEEEEEEEcccCCcccCC--CCCCCccEEEEEeHHHHHHHHHHHHhcC
Confidence 554433 5689999987 799999988 8999999999999993 775 799999999999999999999997
Q ss_pred cCCCCeEEEEEECCEEEEEEecCCcceeEEEEe
Q psy13355 279 NDKLKGVRLVIKPNYLKITVSSSNREKASSTDL 311 (314)
Q Consensus 279 ~~~~~~v~l~~~~~~l~l~~~~~d~G~a~e~~~ 311 (314)
+ .|.|.++++++++++.+ |.|+++++++
T Consensus 156 ~----~v~i~~~~~~l~ls~~~-d~g~~~~~l~ 183 (258)
T 1plq_A 156 D----SINIMITKETIKFVADG-DIGSGSVIIK 183 (258)
T ss_dssp S----EEEEEEETTEEEEEEEC-SSCEEEEEEC
T ss_pred C----EEEEEEECCEEEEEEEc-cCceEEEEEe
Confidence 3 49999999999999966 9999999986
No 18
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A* 3p87_A 3vkx_A*
Probab=99.81 E-value=9.7e-19 Score=154.73 Aligned_cols=161 Identities=14% Similarity=0.177 Sum_probs=133.1
Q ss_pred eHHHHHHHHhhhccccccccccceeeeEEEEEECCEEEEEEeccceEEEEEEecCCCC-C-----CcceEEEehhhHHHH
Q psy13355 134 SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF-S-----SCSDIIIPRKTVFTL 207 (314)
Q Consensus 134 ~~~~l~~~i~~v~~a~s~~~~~~~l~gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~~~-~-----~~~~~iip~~~l~~l 207 (314)
++..|+++++.+ +++++|++|++++++|+++|||+||++...+.++... . ++..+.+|.+.+..+
T Consensus 8 ~~~~~k~i~~~i---------~~il~~v~~~~~~~gl~~~a~D~~rla~~~~~l~~~~f~~y~~~~~i~~~i~l~~l~ki 78 (261)
T 1u7b_A 8 QGSILKKVLEAL---------KDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKI 78 (261)
T ss_dssp CTHHHHHHHHHH---------HTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHH
T ss_pred chHHHHHHHHHH---------HHHhcEEEEEEeCCceEEEEECCCCEEEEEEEECHHhCeEEEeCCCeEEEEEHHHHHHH
Confidence 455555555544 4678999999999999999999999999998876421 1 123566777777766
Q ss_pred HhhhcCCCCcEEEEEe--CcEEEEEECC------EEEEEEeccccCCCccccccc-CcceEEEEehHHHHHHHhHHhhhh
Q psy13355 208 QRLLENKENPVELKIS--NNQIKIIFSN------IEIISKLIDGKFLDYKYVISN-KYEKSFLVNRNKLLRSLQRISIIS 278 (314)
Q Consensus 208 ~k~l~~~~~~v~i~~~--~~~~~~~~~~------~~~~~~li~g~yP~~~~v~p~-~~~~~~~v~~~~l~~al~rv~~~~ 278 (314)
+|...+ ++.++|.++ ++++.|..++ .+|.+|+++|+||+|+ +|. +++..+.+++.+|.++++|+..++
T Consensus 79 l~~~~~-~d~v~i~~~~~~~~l~~~~~~~~~~~~~~~~~rlie~~~~~~~--iP~~~~~~~i~~~~~~l~~ai~r~~~~s 155 (261)
T 1u7b_A 79 LKCAGN-EDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLG--IPEQEYSCVVKMPSGEFARICRDLSHIG 155 (261)
T ss_dssp HTTSCT-TCEEEEEECTTCSEEEEEEECTTSSCEEEEEEECCCCCCCCCB--CCCCCCSEEEEEEHHHHHHHHHHHHTTC
T ss_pred HhcCCC-CCEEEEEecCCCCEEEEEEEcCCCCeEEEEEEECccCCcccCC--CCCCcccEEEEEEHHHHHHHHHHHHhcC
Confidence 665543 568999998 6899999988 8999999999999997 886 899999999999999999999997
Q ss_pred cCCCCeEEEEEECCEEEEEEecCCcceeEEEEe
Q psy13355 279 NDKLKGVRLVIKPNYLKITVSSSNREKASSTDL 311 (314)
Q Consensus 279 ~~~~~~v~l~~~~~~l~l~~~~~d~G~a~e~~~ 311 (314)
+ .|.|.++++++++++. +|.|+++++++
T Consensus 156 ~----~v~i~~~~~~l~ls~~-~d~g~~~~~~~ 183 (261)
T 1u7b_A 156 D----AVVISCAKDGVKFSAS-GELGNGNIKLS 183 (261)
T ss_dssp S----EEEEEEETTEEEEEEE-ETTEEEEEEEC
T ss_pred C----EEEEEEECCEEEEEEE-ecCceEEEEEe
Confidence 4 3999999999999996 69999999986
No 19
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=99.81 E-value=1.1e-18 Score=152.97 Aligned_cols=162 Identities=13% Similarity=0.112 Sum_probs=132.8
Q ss_pred eHHHHHHHHhhhccccccccccceeeeEEEEEECCEEEEEEeccceEEEEEEecCCCCCCc----ceEEEehhhHHHHHh
Q psy13355 134 SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSC----SDIIIPRKTVFTLQR 209 (314)
Q Consensus 134 ~~~~l~~~i~~v~~a~s~~~~~~~l~gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~~~~~~----~~~iip~~~l~~l~k 209 (314)
++..|+++++.+. .+++|++|++++++|+++|||+||++...+.++...-.+ .+..+|...+.++.|
T Consensus 8 ~a~~~k~i~~ai~---------~i~~~~~~~~~~~gl~~~A~D~~rval~~~~l~~~~F~~y~~~~~~~i~gi~l~~l~k 78 (245)
T 3fds_D 8 DAVSFSYILRTVG---------DFLSEANFIVTKEGIRVSGIDPSRVVFLDIFLPSSYFEGFEVSQEKEIIGFKLEDVND 78 (245)
T ss_dssp CHHHHHHHHHHHH---------TTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGEEEEEESSSCEEEEEEHHHHHH
T ss_pred cHHHHHHHHHHHH---------HHhceEEEEEcCCeEEEEEECCCCEEEEEEEEChHhCEEEEeCCccEEEEEEHHHHHH
Confidence 5666777776654 457899999999999999999999999998876321001 134446667777777
Q ss_pred hhc--CCCCcEEEEEeCcEEEEEECCE---EEEEEeccccCCCcccccc-cCcceEEEEehHHHHHHHhHHhhhhcCCCC
Q psy13355 210 LLE--NKENPVELKISNNQIKIIFSNI---EIISKLIDGKFLDYKYVIS-NKYEKSFLVNRNKLLRSLQRISIISNDKLK 283 (314)
Q Consensus 210 ~l~--~~~~~v~i~~~~~~~~~~~~~~---~~~~~li~g~yP~~~~v~p-~~~~~~~~v~~~~l~~al~rv~~~~~~~~~ 283 (314)
+|+ +.++.|+|.++++++.|..++. .|.+|+++|+||+|+ +| .++++.+.+++.+|.++++|+..+++
T Consensus 79 iL~~~~~~d~v~i~~~~~~l~~~~~~~~~~~~~~rLid~~~~~~~--iP~~~~~~~v~~~s~~f~~~i~~~~~~s~---- 152 (245)
T 3fds_D 79 ILKRVLKDDTLILSSNESKLTLTFDGEFTRSFELPLIQVESTQPP--SVNLEFPFKAQLLTITFADIIDELSDLGE---- 152 (245)
T ss_dssp HHTTCCTTCEEEEEECSSEEEEEEESSSEEEEEEECCCCCCCCC------CCCSEEEEEEHHHHHHHHHHHTTTCS----
T ss_pred HHHhcCCCCEEEEEEeCCEEEEEEecCceEEEEEEeecCCcccCC--CCCcceEEEEEEEHHHHHHHHHHHHhcCC----
Confidence 775 2357899999999999999887 899999999999998 77 48999999999999999999999973
Q ss_pred eEEEEEECCEEEEEEecCCcceeEEEEe
Q psy13355 284 GVRLVIKPNYLKITVSSSNREKASSTDL 311 (314)
Q Consensus 284 ~v~l~~~~~~l~l~~~~~d~G~a~e~~~ 311 (314)
.|.|.++++++++++.+ |.|+++++++
T Consensus 153 ~V~i~~~~~~l~~s~~g-d~g~~~~~l~ 179 (245)
T 3fds_D 153 VLNIHSKENKLYFEVIG-DLSTAKVELS 179 (245)
T ss_dssp EEEEEEETTEEEEEEEC-SSCEEEEEEC
T ss_pred EEEEEEeCCEEEEEEEe-cCcEEEEEEc
Confidence 79999999999999986 9999999986
No 20
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A
Probab=99.80 E-value=9e-19 Score=153.67 Aligned_cols=165 Identities=12% Similarity=0.179 Sum_probs=125.1
Q ss_pred EEeHHHHHHHHhhhccccccccccceeeeEEEEEECCEEEEEEeccceEEEEEEecCCCCCCcc---eEEEehhhHHHHH
Q psy13355 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCS---DIIIPRKTVFTLQ 208 (314)
Q Consensus 132 ~v~~~~l~~~i~~v~~a~s~~~~~~~l~gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~~~~~~~---~~iip~~~l~~l~ 208 (314)
.+++..|+++++.+. .+++|++|++++++|+++|+|+||++...+.++...-.+. +.+ |...+.++.
T Consensus 5 ~~~a~~~k~i~~ai~---------~i~~~v~~~~~~~gl~~~A~D~~rvalv~~~l~~~~F~~y~~~~~v-~g~~l~~l~ 74 (247)
T 3ifv_A 5 IVSAATLRDALDSVS---------VLVDECKIRLNEESLSIRAVDPANVGMVDLTLDAAAFESYEAHGGV-IGVNLSRLE 74 (247)
T ss_dssp EECHHHHHHHHHHHH---------TTCSSEEEC---CEEEEEEECTTSSEEEEEEEEGGGSSBC-----C-EEECHHHHH
T ss_pred EEcHHHHHHHHHHHH---------HHhcEEEEEEeCCeEEEEEECCccEEEEEEEEchhcCeEEEccCcE-EEEEHHHHH
Confidence 458899998888775 5788999999999999999999999999987763210011 234 788888888
Q ss_pred hhhcC--CCCcEEEEEeC--cEEEEEECCEEEEEEeccccCCCcccccc-cCcceEEEEehHHHHHHHhHHhhhhcCCCC
Q psy13355 209 RLLEN--KENPVELKISN--NQIKIIFSNIEIISKLIDGKFLDYKYVIS-NKYEKSFLVNRNKLLRSLQRISIISNDKLK 283 (314)
Q Consensus 209 k~l~~--~~~~v~i~~~~--~~~~~~~~~~~~~~~li~g~yP~~~~v~p-~~~~~~~~v~~~~l~~al~rv~~~~~~~~~ 283 (314)
|+|+. .++.|+|.+++ +++.|..++..|.+|+++++||+|+..+| .++++.+.+++.+|.++++|+..+++
T Consensus 75 kiL~~~~~~d~v~i~~~~~~~~l~~~~~~~~~~~rLid~~~~~~~~~iP~~e~~~~v~~~s~~f~~~i~~~~~~sd---- 150 (247)
T 3ifv_A 75 EVAGMAGAGDLIHLTLDEETRKLNIRIDGLSYTLALIDPDSIRQEPDIPDLDLAANIVLEGTHLDRGIKAADMVSD---- 150 (247)
T ss_dssp HHHTTC----CEEECC-------EEEETTEEEEC---CTTC----CCCCCCCCSEEEEEEHHHHHHHHHHHHHHCS----
T ss_pred HHHhcCCCCCEEEEEEcCCCCEEEEEEeCcEEEEEeecccccccCCCCCCCCceEEEEEEHHHHHHHHHHHHhhCC----
Confidence 88872 35789999976 78999999999999999999999999999 68899999999999999999999973
Q ss_pred eEEEEEE--CCEEEEEEecCCcceeEEEEe
Q psy13355 284 GVRLVIK--PNYLKITVSSSNREKASSTDL 311 (314)
Q Consensus 284 ~v~l~~~--~~~l~l~~~~~d~G~a~e~~~ 311 (314)
.|.|.++ ++.+++++.+ |.|+++++++
T Consensus 151 ~V~i~~~~~~~~~~~s~~g-d~g~~~~~l~ 179 (247)
T 3ifv_A 151 HIRLRVDGAEETFHIEAEG-DTDDVDLSLP 179 (247)
T ss_dssp EEEEEEETTTTEEEEEEEC-SSCEEEEEEC
T ss_pred EEEEEEECCCCEEEEEEEe-cceEEEEEEC
Confidence 7999999 8899999976 9999999886
No 21
>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A*
Probab=99.79 E-value=1e-16 Score=148.92 Aligned_cols=217 Identities=10% Similarity=0.181 Sum_probs=177.7
Q ss_pred EeehHHHHHHHHHhhccccCCCCccccccEEEEEECC-EEEEEEecCeEEEEEEEEeeeeccceEEEEechHHHHHHhcC
Q psy13355 6 NTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSE-KISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSL 84 (314)
Q Consensus 6 ~i~~~~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~-~l~l~atd~~~~~~~~~~~~~~~~~G~~~v~~k~l~~iik~l 84 (314)
+++...|.++++++..+++....+|+|+|++++.+++ +|++.|||+.+-..+.++.....++..++||+|.+.++.|.+
T Consensus 136 ~i~~~~l~~~i~~t~fA~s~de~r~~L~Gv~~~~~~~~~l~~vATDg~RLa~~~~~~~~~~~~~~~iiP~k~l~el~kll 215 (378)
T 2avt_A 136 ILKTKLLKSIIAETAFAASLQESRPILTGVHIVLSNHKDFKAVATDSHRMSQRLITLDNTSADFMVVLPSKSLREFSAVF 215 (378)
T ss_dssp EEEHHHHHHHHHHHGGGSCCCTTSGGGGEEEEEEETTTEEEEEEECSSEEEEEEEECSSCCCCEEEEEEHHHHHHHHHHS
T ss_pred EECHHHHHHHHhheEEEEECCCCcceeEEEEEEECCCCeEEEEEecCeeEEEEEeccCCCCCccEEEEEhHHHHHHHHhc
Confidence 8999999999999999999999999999999999999 999999999997777776543213458999999999999999
Q ss_pred CC-CCcEEEEEeCCEEEEEECCeEEEEecCCCCCCCCCcCC-C-CCceEEEEeHHHHHHHHhhhccccccc-cccceeee
Q psy13355 85 PE-TEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLN-S-KYDFEFTLSQKTLKCILNMVYFSIAQQ-DIRYYLNG 160 (314)
Q Consensus 85 ~~-~~~v~l~~~~~~l~I~~g~~~~~l~~~~~~~fP~~~~~-~-~~~~~~~v~~~~l~~~i~~v~~a~s~~-~~~~~l~g 160 (314)
++ ++.|.+..+++++.++.|+..+..+.++ +.||++..+ + +....+.+++..|.++++++... +++ .. ++
T Consensus 216 ~~~~~~v~i~~~~~~i~f~~~~~~~~srLid-g~fPdy~~viP~~~~~~~~v~~~~l~~al~Rvs~l-s~~~~~----~~ 289 (378)
T 2avt_A 216 TDDIETVEVFFSPSQILFRSEHISFYTRLLE-GNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLI-SNATQN----GT 289 (378)
T ss_dssp CTTCCEEEEEECSSEEEEECSSEEEEEECCC-SCCCCCGGGSCCCCSEEEEEEHHHHHHHHHHHHHH-HTTSTT----CC
T ss_pred ccCCceEEEEEcCCEEEEEECCEEEEEEEec-ccCCChhhcCCCCCCEEEEEEHHHHHHHHHHHHHH-hccCCC----ce
Confidence 74 3359999999999999999999999886 589999874 2 24689999999999999999854 433 32 36
Q ss_pred EEEEEECCEEEEEEeccce-EEEEEEec-CCCCCCcceEEEehhhHHHHHhhhcCCCCcEEEEEeCc--EEEEEE
Q psy13355 161 LLLSFQKKNIIAVSSDGHR-LTYYQVNI-DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNN--QIKIIF 231 (314)
Q Consensus 161 v~l~~~~~~l~~~aTDg~R-l~~~~~~~-~~~~~~~~~~iip~~~l~~l~k~l~~~~~~v~i~~~~~--~~~~~~ 231 (314)
|.|.+++|.+.+.|.+... -+...+++ +...+ +..+.+..++|.+.++.+.. +.|.+++.+. -+.++.
T Consensus 290 v~l~~~~~~l~l~a~~~e~g~a~e~l~~~~~~Ge-~~~I~FN~~YL~d~L~~~~~--~~v~l~~~~~~~p~~i~~ 361 (378)
T 2avt_A 290 VKLEITQNHISAHVNSPEVGKVNEDLDIVSQSGS-DLTISFNPTYLIESLKAIKS--ETVKIHFLSPVRPFTLTP 361 (378)
T ss_dssp EEEEEETTEEEEEEEETTTEEEEEECCCSEEEEC-CEEEEECHHHHHHHHHTCCS--SEEEEEECCTTSCEEEEE
T ss_pred EEEEEeCCEEEEEEeCCCCceeEEEEeeeeecCC-eEEEEEcHHHHHHHHhcCCC--CEEEEEECCCCCCEEEEc
Confidence 9999999999999877432 24444544 22222 68999999999999999974 7899999865 466665
No 22
>3p16_A DNA polymerase III subunit beta; DNA polymerase III sliding clamp, transferase; HET: DNA; 2.89A {Mycobacterium tuberculosis} PDB: 3rb9_A*
Probab=99.77 E-value=1.1e-16 Score=149.69 Aligned_cols=237 Identities=14% Similarity=0.107 Sum_probs=180.9
Q ss_pred EeehHHHHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEecCeEEEEEEEEeeee--ccceEEEEechHHHHHHhc
Q psy13355 6 NTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG--NSSINIIVAARKFIDILRS 83 (314)
Q Consensus 6 ~i~~~~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~atd~~~~~~~~~~~~~~--~~~G~~~v~~k~l~~iik~ 83 (314)
+++...|.++++++..+++....+|+|+|++++.++++|++.|||+.+-..+.++.+.. ..+..++||+|.+.++.|.
T Consensus 144 ~i~~~~L~~~I~~t~fA~s~de~rp~L~Gv~~~~~~~~l~~VATDghRLA~~~~~~~~~~~~~~~~~iIP~k~l~el~kl 223 (408)
T 3p16_A 144 LLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKA 223 (408)
T ss_dssp EECHHHHHHHHHHHTTSSCCSSSCCCSCEEEEEEETTEEEEEEECSSEEEEEEEECBCSSSSCEEEEEEEHHHHHHHHHT
T ss_pred EEcHHHHHHHHhhheecccCccchhhceEEEEEEECCEEEEEEcCcceEEEEeccccccCCCCceeEEEEHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999988888775432 1234799999999999999
Q ss_pred CCCCCcEEEEEeC-------CEEEEEECCeEEEEecCCCCCCCCCcCCCC--CceEEEEeHHHHHHHHhhhccccccccc
Q psy13355 84 LPETEKVTIYIEN-------KHMFIKSGKSKFTLQTLDAKEYPIMTLNSK--YDFEFTLSQKTLKCILNMVYFSIAQQDI 154 (314)
Q Consensus 84 l~~~~~v~l~~~~-------~~l~I~~g~~~~~l~~~~~~~fP~~~~~~~--~~~~~~v~~~~l~~~i~~v~~a~s~~~~ 154 (314)
|+++++|+|.+.+ +++.+++|+..+..+.++. +||++..+-+ ....+.+++..|.++++++... + +..
T Consensus 224 l~~~~~V~i~~~~~~~~~~~~~i~f~~~~~~~~srLIdG-~fPdy~~vIP~~~~~~v~v~r~~l~~al~Rvsll-s-~~~ 300 (408)
T 3p16_A 224 GIGGSDVRLSLGTGPGVGKDGLLGISGNGKRSTTRLLDA-EFPKFRQLLPTEHTAVATMDVAELIEAIKLVALV-A-DRG 300 (408)
T ss_dssp CCSSSCEEEESCSSSSCCSSCCCEEECSSEEEECCCCSS-CCCCGGGTCCSSCSEEEEEEHHHHHHHHHHHHTT-C-CSS
T ss_pred cCCCCcEEEEEcCCcccccceEEEEEECCEEEEEEeccc-CCCChhhhCCCCCCEEEEEEHHHHHHHHHHHHhh-h-cCC
Confidence 9755569999875 3899999999999888865 8999977532 3678999999999999999755 3 222
Q ss_pred cceeeeEEEEEECCEEEEEEeccce-EEEEEEecCCCCCCcceEEEehhhHHHHHhhhcCCCCcEEEEEeCc--EEEEEE
Q psy13355 155 RYYLNGLLLSFQKKNIIAVSSDGHR-LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNN--QIKIIF 231 (314)
Q Consensus 155 ~~~l~gv~l~~~~~~l~~~aTDg~R-l~~~~~~~~~~~~~~~~~iip~~~l~~l~k~l~~~~~~v~i~~~~~--~~~~~~ 231 (314)
++|.|.+.+|.|.+.|.+... -+.-.++++...+ +..+.+..++|.+.++.+.. ++|.+.+.+. -+.++.
T Consensus 301 ----~~V~l~~~~~~l~i~a~~~e~g~a~E~i~~~~~Ge-~l~I~FN~~YLlD~L~~i~~--e~V~l~~~~~~~P~~i~~ 373 (408)
T 3p16_A 301 ----AQVRMEFADGSVRLSAGADDVGRAEEDLVVDYAGE-PLTIAFNPTYLTDGLSSLRS--ERVSFGFTTAGKPALLRP 373 (408)
T ss_dssp ----CCEEEEEETTEEEEEEECSSSCEEEEEEECEEEES-CCEEEECHHHHHHHHHHSCS--SEEEEEESCTTSCEEEEE
T ss_pred ----ceEEEEEeCCEEEEEEeCCCCceEEEEEEEEEeCC-cEEEEEeHHHHHHHHhccCC--CeEEEEECCCCCcEEEEe
Confidence 469999999999999976532 2445566553323 68999999999999999974 7899999854 456654
Q ss_pred CCEE---EEEEeccccCC----Cccccc
Q psy13355 232 SNIE---IISKLIDGKFL----DYKYVI 252 (314)
Q Consensus 232 ~~~~---~~~~li~g~yP----~~~~v~ 252 (314)
.+-. -...-.+|.|| +|..++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~li 401 (408)
T 3p16_A 374 VSGDDRPVAGLNGNGPFPAVSTDYVYLL 401 (408)
T ss_dssp ECCC--------------CCSSSEEEEE
T ss_pred CCCCccccccccccccccCCCCcEEEEE
Confidence 2211 01122456665 666654
No 23
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae}
Probab=99.75 E-value=3e-16 Score=158.30 Aligned_cols=275 Identities=14% Similarity=0.199 Sum_probs=201.9
Q ss_pred eEEeehHHHHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEecCeEEEEEEEEee-----------e-eccceEEE
Q psy13355 4 VVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG-----------Y-GNSSINII 71 (314)
Q Consensus 4 ~~~i~~~~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~atd~~~~~~~~~~~~-----------~-~~~~G~~~ 71 (314)
.|+++...|.++++-+..+- ..|.|.+..+++.|.+....-.....++.. . ..++.+..
T Consensus 142 ~v~m~s~~f~~~~~dl~~~s---------d~v~i~~~~~~~~~s~~Gd~g~~~v~~~~~~~~~~~~~~~~i~~~e~~~~~ 212 (798)
T 3k4x_A 142 TLSLPSSEFSKIVRDLSQLS---------DSINIMITKETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLT 212 (798)
T ss_dssp EEEEEHHHHHHHHHHHTTTC---------SEEEEEEETTEEEEEEECSSEEEEEEECCBCCSSCGGGCBEEEESSCEEEE
T ss_pred EEEEEHHHHHHHHHHHHhhC---------CEEEEEEECCEEEEEEEecCcEEEEEEcCCCCCCCccceEEEEeCCceeEE
Confidence 35899999999999988753 378899999999998874322334444311 1 13677888
Q ss_pred EechHHHHHHhcCCCCCcEEEEEeCC-EEEE--EECCe--EEEEecCCCCCCCCCcCCCCC-------ceEE-EEeHHHH
Q psy13355 72 VAARKFIDILRSLPETEKVTIYIENK-HMFI--KSGKS--KFTLQTLDAKEYPIMTLNSKY-------DFEF-TLSQKTL 138 (314)
Q Consensus 72 v~~k~l~~iik~l~~~~~v~l~~~~~-~l~I--~~g~~--~~~l~~~~~~~fP~~~~~~~~-------~~~~-~v~~~~l 138 (314)
...+.|..+.|.++-.+.|+|...++ =|.+ .-|.+ +|-+. |.+...+.. .... --++..|
T Consensus 213 ysl~yL~~~~Ka~~ls~~V~l~~~~~~PL~l~y~i~~G~l~f~lA-------Pri~~~~~~~~~~~~~~~~a~~~~a~~~ 285 (798)
T 3k4x_A 213 FGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKSGFLQFFLA-------PKFNDEGSNSQSNGSGALEAKFEEASLF 285 (798)
T ss_dssp EEHHHHHHHGGGGGTCSEEEEEECSSSCEEEEEEETTEEEEEEEC-------CC---------------CEEEESCHHHH
T ss_pred EEHHHHHHhhcccccCCEEEEEeCCCCcEEEEEEECCeEEEEEEc-------cCCCCccchhhhcchheEEEEeccHHHH
Confidence 99999999999988655699998754 2322 22443 34332 222221110 1111 1224444
Q ss_pred HHHHhhhccccccccccceeeeEEEEEECCEEEEEEeccceEEEEEEecCCC------CCCcceEEEehhhHHHHHhhhc
Q psy13355 139 KCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKK------FSSCSDIIIPRKTVFTLQRLLE 212 (314)
Q Consensus 139 ~~~i~~v~~a~s~~~~~~~l~gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~~------~~~~~~~iip~~~l~~l~k~l~ 212 (314)
+.+++. ...++.+++|+++++++++.|+|++|++...+.++.. .+++..+.||.+.+..++|..+
T Consensus 286 k~ii~a---------i~~lvde~~f~~~~~Gl~~~A~D~~rvalv~l~l~~~aF~ey~~~~~~~igv~l~~L~kil~~~~ 356 (798)
T 3k4x_A 286 KRIIDG---------FKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGN 356 (798)
T ss_dssp HHHHHH---------HTTTCSEEEEEEETTEEEEEEECTTSCEEEEEEEEGGGSSEEECSSCEEEEEEHHHHHHHTTSSC
T ss_pred HHHHHH---------HHHHhccEEEEEcCCeEEEEEECCCcEEEEEEECCHHHCceEecCCCEEEEEEHHHHHHHHhhCC
Confidence 444444 3456789999999999999999999999998876521 1224679999999998888775
Q ss_pred CCCCcEEEEEeC--cEEEEEECCE------EEEEEeccccCCCccccccc-CcceEEEEehHHHHHHHhHHhhhhcCCCC
Q psy13355 213 NKENPVELKISN--NQIKIIFSNI------EIISKLIDGKFLDYKYVISN-KYEKSFLVNRNKLLRSLQRISIISNDKLK 283 (314)
Q Consensus 213 ~~~~~v~i~~~~--~~~~~~~~~~------~~~~~li~g~yP~~~~v~p~-~~~~~~~v~~~~l~~al~rv~~~~~~~~~ 283 (314)
. ++.+++.+++ +++.|.+++. +|.+|++++.||+ ..+|. +++..+.+++.+|.++|+++..+++
T Consensus 357 ~-~d~l~l~~~~~~~~l~~~~~~~~~~~~~~~~~~lid~~~~~--~~iP~~e~~~k~~i~~~~f~~al~~v~~vsd---- 429 (798)
T 3k4x_A 357 N-TDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADF--LKIEELQYDSTLSLPSSEFSKIVRDLSQLSD---- 429 (798)
T ss_dssp T-TSBEEEECCSSCSEEEEEEECSSSSCEEEEEEECBCCCCCC--CCCCCCCCSEEEEEEHHHHHHHHHHHHTTCS----
T ss_pred C-CCeEEEEEeCCCCEEEEEEccCCceeEEEEEEecccCCCCC--CCCCCccccEEEEEEHHHHHHHHHHHHHhCC----
Confidence 4 5789999886 8899988765 8999999999997 66775 7899999999999999999999764
Q ss_pred eEEEEEECCEEEEEEecCCcceeEEEEe
Q psy13355 284 GVRLVIKPNYLKITVSSSNREKASSTDL 311 (314)
Q Consensus 284 ~v~l~~~~~~l~l~~~~~d~G~a~e~~~ 311 (314)
.|.|...++++++++. +|.|++.++++
T Consensus 430 ~Iki~~~~~~l~l~as-gd~g~~~i~i~ 456 (798)
T 3k4x_A 430 SINIMITKETIKFVAD-GDIGSGSVIIK 456 (798)
T ss_dssp EEEEEEETTEEEEEEE-CSSCEEEEEEC
T ss_pred eEEEEEeCCEEEEEEE-ecCCceEEEEe
Confidence 6999999999999997 79999998886
No 24
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis}
Probab=99.73 E-value=2.4e-16 Score=139.11 Aligned_cols=161 Identities=14% Similarity=0.228 Sum_probs=134.8
Q ss_pred eHHHHHHHHhhhccccccccccceeeeEEEEEECCEEEEEEeccceEEEEEEecCCCC------CCcceEEEehhhHHHH
Q psy13355 134 SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF------SSCSDIIIPRKTVFTL 207 (314)
Q Consensus 134 ~~~~l~~~i~~v~~a~s~~~~~~~l~gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~~~------~~~~~~iip~~~l~~l 207 (314)
++..|+++++.+. .+++|++|++++++|+++|+|++|++...+.++... +.+..+.++.+.+..+
T Consensus 9 ~a~~lk~ii~ai~---------~i~~~v~~~~~~~gl~~~A~D~~rvalv~~~l~~~~F~~y~~~~~~~igi~l~~L~ki 79 (259)
T 3lx2_A 9 SAREFESLIATLE---------KFFDEAVFQVNMEGIQMRAIDPSRVVLVDLNLPEMLFSKYSVESEEAIAFDLKRFLKV 79 (259)
T ss_dssp CHHHHHHHHHHHH---------TTCSEEEEEECSSEEEEEEECTTSCEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHH
T ss_pred cHHHHHHHHHHHH---------HHhceEEEEEecCeEEEEEECCCCEEEEEEEEChHhcEEEEcCCCEEEEEEHHHHHHH
Confidence 4666777766653 457899999999999999999999999988776321 1245577888888877
Q ss_pred HhhhcCCCCcEEEEEe-CcEEEEEECC---EEEEEEeccccCCCcccccc-cCcceEEEEehHHHHHHHhHHhhhhcCCC
Q psy13355 208 QRLLENKENPVELKIS-NNQIKIIFSN---IEIISKLIDGKFLDYKYVIS-NKYEKSFLVNRNKLLRSLQRISIISNDKL 282 (314)
Q Consensus 208 ~k~l~~~~~~v~i~~~-~~~~~~~~~~---~~~~~~li~g~yP~~~~v~p-~~~~~~~~v~~~~l~~al~rv~~~~~~~~ 282 (314)
+|..++ ++.|+|..+ ++++.|..++ ..|.+|+++++||+|. +| .++++.+.+++.+|.++++|+..+++
T Consensus 80 Lk~~~~-~d~v~i~~~~~~~l~~~~e~~~~~~~~~rLid~~~~~~~--iP~~e~~~~v~~~s~~f~~~i~~~~~~sd--- 153 (259)
T 3lx2_A 80 LKLARS-RDTLVLRKGGENFLEVGLLGDENTWFKLPLIDANTPEIE--IPSLPWTVKAVVLAGALKRAVKAAKLVSD--- 153 (259)
T ss_dssp HTTCCT-TCEEEEEECSSSEEEEEEESSSEEEEEEECCCCCCCCCC--CCCCCCCEEEEEEHHHHHHHHHHHHHHCS---
T ss_pred HHhcCC-CCEEEEEECCCCEEEEEEecCceEEEEEEeeccCcccCC--CCCCceeEEEEEEHHHHHHHHHHHHhcCC---
Confidence 776654 578999965 4889999999 9999999999999985 67 68899999999999999999999974
Q ss_pred CeEEEEEECCEEEEEEecCCcceeEEEEe
Q psy13355 283 KGVRLVIKPNYLKITVSSSNREKASSTDL 311 (314)
Q Consensus 283 ~~v~l~~~~~~l~l~~~~~d~G~a~e~~~ 311 (314)
.|.|.++++++++++.+ |.|+++++++
T Consensus 154 -~V~i~~~~~~v~~ss~g-d~G~~~~~l~ 180 (259)
T 3lx2_A 154 -SIYFMATPEKLTFKAEG-NDSEVRTVLT 180 (259)
T ss_dssp -EEEEEECSSCEEEEEEC-SSCEEEEEEC
T ss_pred -EEEEEEECCEEEEEEEe-cCcEEEEEEc
Confidence 79999999999999976 9999999985
No 25
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica}
Probab=99.71 E-value=1.2e-15 Score=134.96 Aligned_cols=168 Identities=12% Similarity=0.123 Sum_probs=138.4
Q ss_pred eEEEE-eHHHHHHHHhhhccccccccccceeeeEEEEEECCEEEEEEeccceEEEEEEecCCCC------CCcceEEEeh
Q psy13355 129 FEFTL-SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF------SSCSDIIIPR 201 (314)
Q Consensus 129 ~~~~v-~~~~l~~~i~~v~~a~s~~~~~~~l~gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~~~------~~~~~~iip~ 201 (314)
....+ ++..|+++++.+. ++++|++|++++++|+++|+|+||++...+.++... +.+..+.++.
T Consensus 7 f~a~~~~a~~lk~ii~ai~---------~i~~~v~~~~~~~gl~~~A~D~~rvalv~~~l~~~~F~~y~~d~~~~igi~l 77 (265)
T 3p91_A 7 FHAKFKEAALFKRVVESLK---------STIDKTNFDCSDAGIAVQCMDNSHVSLVSLLIETDAFDEFQCLKPITLGINL 77 (265)
T ss_dssp EEEEESCHHHHHHHHHHHH---------TTCSEEEEEEETTEEEEEEECTTSSSEEEEEECGGGEEEEECSSCEEEEEEH
T ss_pred EEEEECchHHHHHHHHHHH---------HHhceEEEEEeCCeEEEEEECCCcEEEEEEEEChhhceEEEeCCCeEEEEEH
Confidence 34555 6788888877664 578899999999999999999999999988876321 1234577777
Q ss_pred hhHHHHHhhhcCCCCcEEEEEeCc--EEEEEECC-----EEEEEEeccccCCCcccccc-cCcceEEEEehHHHHHHHhH
Q psy13355 202 KTVFTLQRLLENKENPVELKISNN--QIKIIFSN-----IEIISKLIDGKFLDYKYVIS-NKYEKSFLVNRNKLLRSLQR 273 (314)
Q Consensus 202 ~~l~~l~k~l~~~~~~v~i~~~~~--~~~~~~~~-----~~~~~~li~g~yP~~~~v~p-~~~~~~~~v~~~~l~~al~r 273 (314)
+.+..++|...+ ++.|+|.++++ ++.|.+++ ..|.+|+++++||++ .+| .++++.+.+++.+|.++++|
T Consensus 78 ~~L~kiLk~~~~-~d~v~i~~~~~~~~l~~~~e~~~~~~i~~~lrLid~~~~~~--~iP~~e~~~~v~~~s~~f~~~i~~ 154 (265)
T 3p91_A 78 THLSKILKALDN-DCGLILDVKKVDDAVLSITSEGTNKTMKFGLNLVDIEAESV--EIPELQSDAIITLSSAEFLKITKD 154 (265)
T ss_dssp HHHHHHHTTSCT-TSEEEEEECSSSSEEEEEEEC--CCEEEEEEECCCCCCCCC--CCCCCCCSEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHhhcCC-CCEEEEEEcCCCCeEEEEEEeCCCceEEEEEEecccCcccC--CCCCCCccEEEEEEHHHHHHHHHH
Confidence 777777776654 57899999865 89998876 489999999999985 577 58899999999999999999
Q ss_pred HhhhhcCCCCeEEEEEECCEEEEEEecCCcceeEEEEee
Q psy13355 274 ISIISNDKLKGVRLVIKPNYLKITVSSSNREKASSTDLI 312 (314)
Q Consensus 274 v~~~~~~~~~~v~l~~~~~~l~l~~~~~d~G~a~e~~~~ 312 (314)
+..++++ .|.|.+.++++++++.+ |.|+++++++.
T Consensus 155 ~~~~s~d---~V~i~~~~~~v~~ss~g-d~G~~~~~l~~ 189 (265)
T 3p91_A 155 FSALGDD---SITIGCTKNEVTLTTKG-AMCETCMTLSA 189 (265)
T ss_dssp HHHHCCS---EEEEEECSSEEEEEEEC-SSCEEEEEEEC
T ss_pred HHhCCCC---EEEEEEECCEEEEEEEe-cCceEEEEEec
Confidence 9999842 79999999999999975 99999999863
No 26
>3aiz_C DNA polymerase sliding clamp C; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_A*
Probab=99.51 E-value=2.2e-11 Score=106.35 Aligned_cols=209 Identities=10% Similarity=0.146 Sum_probs=146.9
Q ss_pred CeEeEEeehHHHHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEecCeEEEEEEEEeeee-ccc------eEEEEe
Q psy13355 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG-NSS------INIIVA 73 (314)
Q Consensus 1 Mk~~~~i~~~~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~atd~~~~~~~~~~~~~~-~~~------G~~~v~ 73 (314)
|+|... +...|.++++.+ .|++.++++++.+++|++.|||+...+.+.+..... .++ -...++
T Consensus 1 M~fr~~-~~~~lk~~i~~~---------~~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~i~~~~~ 70 (246)
T 3aiz_C 1 MRVKVI-DADAFSYIFRTL---------EEFIDEITLDFTSDGLKIRGIDPSRVTFIDILIPAGYFEEYNVEKEEKVGVK 70 (246)
T ss_dssp CEEEES-CHHHHHHHHHHH---------TTTCSEEEEEECSSEEEEEEECTTSCEEEEEEEEGGGSSEEECSSCEEEEEE
T ss_pred CceEEe-cHHHHHHHHHHH---------HHHhcEEEEEEcCCeEEEEEECCCcEEEEEEEEChHhCcEEEcCCCeEEEEE
Confidence 777334 778888888887 467889999999999999999988654444443221 112 233444
Q ss_pred chHHHHHHhcCCCCCcEEEEEeC-CEEEEEECC---eEEEEecCCCCCCCCCcCCC-CCceEEEEeHHHHHHHHhhhccc
Q psy13355 74 ARKFIDILRSLPETEKVTIYIEN-KHMFIKSGK---SKFTLQTLDAKEYPIMTLNS-KYDFEFTLSQKTLKCILNMVYFS 148 (314)
Q Consensus 74 ~k~l~~iik~l~~~~~v~l~~~~-~~l~I~~g~---~~~~l~~~~~~~fP~~~~~~-~~~~~~~v~~~~l~~~i~~v~~a 148 (314)
...|.++++....++.|+|..++ +++.+..++ ..|.++.+++ +||+++.++ +....+.+++..|+++++++...
T Consensus 71 l~~l~kiL~~~~~~~~v~i~~~~~~~l~~~~~~~~~~~~~~rlidg-~~p~~~iP~~~~~~~i~i~~~~l~~a~~r~~~l 149 (246)
T 3aiz_C 71 LEDFTDVLKTVTKNDSLYLETDENQNIKVTLDGVYERTFTFPSIVA-SEIETPNLNLEFPFKAKALTVTFTDIIDEIEDI 149 (246)
T ss_dssp HHHHHHHHTTCCTTCEEEEEECSSSCEEEEEESSSEEEEEECCCCC-CCCCCSCSCCCCSEEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCCEEEEEECCCCeEEEEEecCcEEEEEEEcccC-CcccCCCCCCcccEEEEEEHHHHHHHHHHHhhC
Confidence 44455555433334359999876 589999988 8999999985 789988553 34789999999999999999754
Q ss_pred cccccccceeeeEEEEEECCEEEEEEeccce-EEEEEEe------cCCCCCCcceEEEehhhHHHHHhhhcCCCCcEEEE
Q psy13355 149 IAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR-LTYYQVN------IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELK 221 (314)
Q Consensus 149 ~s~~~~~~~l~gv~l~~~~~~l~~~aTDg~R-l~~~~~~------~~~~~~~~~~~iip~~~l~~l~k~l~~~~~~v~i~ 221 (314)
.+.+ |.|.++++.+.+.+ ++.. -+...++ ..... ++..+.+..++|.+++|.++- +++|.++
T Consensus 150 ~s~~--------V~l~~~~~~l~ls~-~~d~g~~~~~l~~~~~~~~~~~g-e~~~i~Fn~~yL~d~lk~~~~-s~~V~l~ 218 (246)
T 3aiz_C 150 GGDS--------ITFKAEGGKLYLSA-NSDMGSSTIELSTENGGLLESEG-GDAESVYGLEYVVNTSKMRKP-SDTVEIA 218 (246)
T ss_dssp CCSE--------EEEEEETTEEEEEE-ECSSCEEEEEECTTTTSCSEEEE-CCEEEEEEHHHHHTTGGGTTT-CSEEEEE
T ss_pred CCCE--------EEEEEECCEEEEEE-EcCCceEEEEEecCCCccEEEEE-eeEEEEEEHHHHHHHhhhccC-CCeEEEE
Confidence 2332 88999999999886 3431 1233333 11111 268899999999999999862 3789999
Q ss_pred EeCcE-EEEEE
Q psy13355 222 ISNNQ-IKIIF 231 (314)
Q Consensus 222 ~~~~~-~~~~~ 231 (314)
++++. +.++.
T Consensus 219 ~~~~~p~~i~~ 229 (246)
T 3aiz_C 219 FGSQIPLKLRY 229 (246)
T ss_dssp EETTEEEEEEE
T ss_pred ecCCCcEEEEE
Confidence 98754 44543
No 27
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A 3lx1_A*
Probab=99.48 E-value=7.1e-11 Score=103.32 Aligned_cols=210 Identities=11% Similarity=0.136 Sum_probs=145.1
Q ss_pred CeEeEEe-ehHHHHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEecCeEEEEEEEEeeee-cc------ceEEEE
Q psy13355 1 MQLVVNT-EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG-NS------SINIIV 72 (314)
Q Consensus 1 Mk~~~~i-~~~~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~atd~~~~~~~~~~~~~~-~~------~G~~~v 72 (314)
|+|...+ +...|.++++.+.. ++.++++++.+++|++.|||+...+.+.+..... .+ +-.+.+
T Consensus 1 M~f~a~~~~~~~~~~i~~~i~~---------~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~~~~~~ 71 (249)
T 1iz5_A 1 MPFEIVFEGAKEFAQLIDTASK---------LIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGV 71 (249)
T ss_dssp -CEEEEEECHHHHHHHHHHHTS---------SCSEEEEEECSSEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEE
T ss_pred CcEEEEeCchHHHHHHHHHHHH---------HhcEEEEEEeCCeEEEEEECCCcEEEEEEEECHHhCcEEEcCCCeEEEE
Confidence 5563343 45555556655554 4679999999999999999987544444433211 01 246788
Q ss_pred echHHHHHHhcCCCCCcEEEEEeCC-EEEEEECC---eEEEEecCCCCCCCCCcCCC-CCceEEEEeHHHHHHHHhhhcc
Q psy13355 73 AARKFIDILRSLPETEKVTIYIENK-HMFIKSGK---SKFTLQTLDAKEYPIMTLNS-KYDFEFTLSQKTLKCILNMVYF 147 (314)
Q Consensus 73 ~~k~l~~iik~l~~~~~v~l~~~~~-~l~I~~g~---~~~~l~~~~~~~fP~~~~~~-~~~~~~~v~~~~l~~~i~~v~~ 147 (314)
+.+.|.++++....++.|++..+++ ++.+..++ ..|.++.+++ +||+++.++ +....+.++++.|+++++++..
T Consensus 72 ~l~~l~kil~~~~~~~~v~i~~~~~~~l~f~~~~~~~~~~~~rlidg-~~p~~~iP~~~~~~~v~i~~~~l~~a~~r~~~ 150 (249)
T 1iz5_A 72 NLDHLKKILKRGKAKDTLILKKGEENFLEITIQGTATRTFRVPLIDV-EEMEVDLPELPFTAKVVVLGEVLKAAVKAASL 150 (249)
T ss_dssp EHHHHHHHHTTCCTTCEEEEEECSSSEEEEEEESSSEEEEEEECBCC-CC-----CCCCCCEEEEEEHHHHHHHHHHHTT
T ss_pred EHHHHHHHHHhCCCCCEEEEEECCCCeEEEEEecCCEEEEEEEcccC-CccCCCCCCCcceEEEEEEHHHHHHHHHHHHh
Confidence 8888999998775444599999887 99999988 8999999985 789987553 3478999999999999999975
Q ss_pred ccccccccceeeeEEEEEECCEEEEEEeccce-EEEEEEe------cCCCCCCcceEEEehhhHHHHHhhhcCCCCcEEE
Q psy13355 148 SIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR-LTYYQVN------IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVEL 220 (314)
Q Consensus 148 a~s~~~~~~~l~gv~l~~~~~~l~~~aTDg~R-l~~~~~~------~~~~~~~~~~~iip~~~l~~l~k~l~~~~~~v~i 220 (314)
. +.+ |.|.++++.+++.+ ++.. -+...++ ......++..+.+..++|.+++|.++- +++|.+
T Consensus 151 l-s~~--------V~l~~~~~~l~ls~-~~d~g~~~~~l~~~~~~~~~~~~ge~~~i~Fn~~yL~d~lk~~~~-s~~V~l 219 (249)
T 1iz5_A 151 V-SDS--------IKFIARENEFIMKA-EGETQEVEIKLTLEDEGLLDIEVQEETKSAYGVSYLSDMVKGLGK-ADEVTI 219 (249)
T ss_dssp T-CSE--------EEEEEETTEEEEEE-ECSSCEEEEEEETTTTSSSEEEESSCEEEEEEHHHHHHHHTTSCT-TCEEEE
T ss_pred c-CCE--------EEEEEECCEEEEEE-EecCceEEEEEccCCCccEEEEcCCceEEEEeHHHHHHHhhhccC-CCeEEE
Confidence 4 322 88999999999886 4431 1333343 111101268999999999999999862 378999
Q ss_pred EEeCcE-EEEEE
Q psy13355 221 KISNNQ-IKIIF 231 (314)
Q Consensus 221 ~~~~~~-~~~~~ 231 (314)
+++++. +.++.
T Consensus 220 ~~~~~~p~~i~~ 231 (249)
T 1iz5_A 220 KFGNEMPMQMEY 231 (249)
T ss_dssp EECTTCCEEEEE
T ss_pred EEcCCCCEEEEE
Confidence 998654 55543
No 28
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A* 3p83_A*
Probab=99.39 E-value=9.7e-11 Score=102.20 Aligned_cols=206 Identities=10% Similarity=0.090 Sum_probs=143.8
Q ss_pred CeEeEEeehHHHHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEecCeEEEEEEEEeeee-ccceEE---EEechH
Q psy13355 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG-NSSINI---IVAARK 76 (314)
Q Consensus 1 Mk~~~~i~~~~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~atd~~~~~~~~~~~~~~-~~~G~~---~v~~k~ 76 (314)
|+. +..+...|.+.++.+..+ +.++++++.+++|++.|||+..-+.+.+..... .++-.+ ++|++.
T Consensus 1 m~~-~~~~~~~~~~i~~~i~~~---------l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~i~~~~~ 70 (245)
T 1rwz_A 1 MID-VIMTGELLKTVTRAIVAL---------VSEARIHFLEKGLHSRAVDPANVAMVIVDIPKDSFEVYNIDEEKTIGVD 70 (245)
T ss_dssp CEE-EEEEHHHHHHHHHHHHTT---------CSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEE
T ss_pred CeE-EecchHHHHHHHHHHHHH---------hceEEEEEcCCeEEEEEECCCcEEEEEEEEChHhCceEEcCCCeEEEEE
Confidence 555 123566666666666554 569999999999999999987644444433221 122233 456666
Q ss_pred HHHHHhcC---CCCCcEEEEEeCC-EEEEEECC--eEEEEecCCCCCCCCCcCCC-CCceEEEEeHHHHHHHHhhhcccc
Q psy13355 77 FIDILRSL---PETEKVTIYIENK-HMFIKSGK--SKFTLQTLDAKEYPIMTLNS-KYDFEFTLSQKTLKCILNMVYFSI 149 (314)
Q Consensus 77 l~~iik~l---~~~~~v~l~~~~~-~l~I~~g~--~~~~l~~~~~~~fP~~~~~~-~~~~~~~v~~~~l~~~i~~v~~a~ 149 (314)
+.++.|-| ..++.|+|..+++ ++.+..++ ..|.++.+++ +||+++.++ +....+.+++..|+++++++...
T Consensus 71 l~el~kiL~~~~~~~~v~i~~~~~~~l~~~~~~~~~~~~~rlidg-~~p~~~iP~~~~~~~v~~~~~~l~~av~r~~~l- 148 (245)
T 1rwz_A 71 MDRIFDISKSISTKDLVELIVEDESTLKVKFGSVEYKVALIDPSA-IRKEPRIPELELPAKIVMDAGEFKKAIAAADKI- 148 (245)
T ss_dssp HHHHHHHHTTSCTTSEEEEEESSSSEEEEEETTEEEEEECBCGGG-SCCCCCCCCCCCSEEEEEEHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhhCCCCCEEEEEECCCCeEEEEEeeeEEEEEEEcccc-CccCCCCCCCcccEEEEEEHHHHHHHHHHHHhc-
Confidence 66555555 3333599999888 99999999 8999999985 789987553 34789999999999999999744
Q ss_pred ccccccceeeeEEEEEECCEEEEEEeccceEEEEEE----e--cCCCCCCcceEEEehhhHHHHHhhhcCCCCcEEEEEe
Q psy13355 150 AQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV----N--IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKIS 223 (314)
Q Consensus 150 s~~~~~~~l~gv~l~~~~~~l~~~aTDg~Rl~~~~~----~--~~~~~~~~~~~iip~~~l~~l~k~l~~~~~~v~i~~~ 223 (314)
+.+ |.|.++++.+++.+ ++. +..... + .....+ +..+.+..++|.+++|.++- +++|.++++
T Consensus 149 s~~--------V~l~~~~~~l~ls~-~~d-~g~~~~~~~~e~~~~~~g~-~~~i~Fn~~yL~d~lk~~~~-s~~V~l~~~ 216 (245)
T 1rwz_A 149 SDQ--------VIFRSDKEGFRIEA-KGD-VDSIVFHMTETELIEFNGG-EARSMFSVDYLKEFCKVAGS-GDLLTIHLG 216 (245)
T ss_dssp CSE--------EEEEEETTEEEEEE-ECS-SCEEEEEECGGGSSEECCC-CEEEEEEHHHHHHHGGGCCT-TCEEEEEEC
T ss_pred CCE--------EEEEEECCEEEEEE-Ecc-CcEEEEecCCCccEEEEEe-eEEEEEeHHHHHHHhhhccC-CCeEEEEEC
Confidence 322 88999999998885 443 223332 1 111112 58999999999999999862 378999998
Q ss_pred CcE-EEEE
Q psy13355 224 NNQ-IKII 230 (314)
Q Consensus 224 ~~~-~~~~ 230 (314)
++. +.++
T Consensus 217 ~~~p~~i~ 224 (245)
T 1rwz_A 217 TNYPVRLV 224 (245)
T ss_dssp SSSCEEEE
T ss_pred CCCCEEEE
Confidence 643 5554
No 29
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotr binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C*
Probab=99.39 E-value=1.4e-10 Score=101.14 Aligned_cols=202 Identities=12% Similarity=0.184 Sum_probs=139.5
Q ss_pred ehHHHHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEecCeEEEEEEEEeeee-ccceEE---EEechHHHHHHhc
Q psy13355 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG-NSSINI---IVAARKFIDILRS 83 (314)
Q Consensus 8 ~~~~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~atd~~~~~~~~~~~~~~-~~~G~~---~v~~k~l~~iik~ 83 (314)
+.+.|.+.++.+.. ++.++++++.+++|++.|||+...+.+.+..... .++-.+ ++|++.+.++.|-
T Consensus 7 ~a~~~~~i~~~i~~---------~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~i~~~~~l~~l~ki 77 (244)
T 2ijx_A 7 DVRVLKDIIQALAR---------LVDEAVLKFKQDSVELVALDRAHISLISVNLPREMFKEYDVNDEFKFGFNTQYLMKI 77 (244)
T ss_dssp CHHHHHHHHHHHHH---------HCSEEEEEECSSEEEEEEECTTSSEEEEEEEEGGGCSEEECSSCEEEEEEHHHHHHH
T ss_pred chHHHHHHHHHHHH---------HhceEEEEEecCeEEEEEECCCcEEEEEEEECHHhCceEEcCCCEEEEEEHHHHHHH
Confidence 55666666666554 4679999999999999999987644444433221 122122 3455555555544
Q ss_pred C---CCCCcEEEEEeC--CEEEEEECC--eEEEEecCCCCCCCCCcCCC-CCceEEEEeHHHHHHHHhhhcccccccccc
Q psy13355 84 L---PETEKVTIYIEN--KHMFIKSGK--SKFTLQTLDAKEYPIMTLNS-KYDFEFTLSQKTLKCILNMVYFSIAQQDIR 155 (314)
Q Consensus 84 l---~~~~~v~l~~~~--~~l~I~~g~--~~~~l~~~~~~~fP~~~~~~-~~~~~~~v~~~~l~~~i~~v~~a~s~~~~~ 155 (314)
| ..++.|+|..++ +++.+..|+ ..|.++.+++ +||+++.++ +....+.+++..|+++++++... + ++
T Consensus 78 L~~~~~~~~v~i~~~~~~~~l~~~~~~~~~~~~~rlidg-~~p~~~iP~~~~~~~i~i~~~~l~~a~~r~~~~-s-~~-- 152 (244)
T 2ijx_A 78 LKVAKRKEAIEIASESPDSVIINIIGSTNREFNVRNLEV-SEQEIPEINLQFDISATISSDGFKSAISEVSTV-T-DN-- 152 (244)
T ss_dssp HTTCCSSCEEEEEEEETTEEEEEEESSSEEEEEEECCCC-CCCCCCCCCCCCSEEEEEEHHHHHHHHHHHTTT-C-SE--
T ss_pred HhhCCCCCEEEEEecCCCCEEEEEECCEEEEEEEECCcc-CcccCCCCCCcccEEEEEEHHHHHHHHHHHHhc-C-CE--
Confidence 4 333359998876 899999999 8999999885 789887553 34789999999999999999754 3 22
Q ss_pred ceeeeEEEEEECCEEEEEEeccceEEE-EEEe------cCCCCCCcceEEEehhhHHHHHhhhcCCCCcEEEEEeCcE-E
Q psy13355 156 YYLNGLLLSFQKKNIIAVSSDGHRLTY-YQVN------IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQ-I 227 (314)
Q Consensus 156 ~~l~gv~l~~~~~~l~~~aTDg~Rl~~-~~~~------~~~~~~~~~~~iip~~~l~~l~k~l~~~~~~v~i~~~~~~-~ 227 (314)
|.|.++++.+.+.+ ++. +.. ..++ ......++..+.+..++|.+++|.++- +++|.++++++. +
T Consensus 153 -----V~l~~~~~~l~ls~-~~d-~g~~~~l~~~~~~~~~~~~ge~~~i~Fn~~yL~d~lk~~~~-s~~V~l~~~~~~p~ 224 (244)
T 2ijx_A 153 -----VVVEGHEDRILIKA-EGE-SEVEVEFSKDTGGLQDLEFSKESKNSYSAEYLDDVLSLTKL-SDYVKISFGNQKPL 224 (244)
T ss_dssp -----EEEEEETTEEEEEE-TTC-TTSEEEEETTTTCEEEEEESSCEEEEEEHHHHHHTGGGGGG-CSEEEEEEETTEEE
T ss_pred -----EEEEEECCEEEEEE-Eec-CceEEEEeCCCCccEEEEcCCceEEEEEHHHHHHHhhhccC-CCEEEEEEcCCCCE
Confidence 88999999999886 443 222 2222 111101268999999999999999872 378999998664 4
Q ss_pred EEEE
Q psy13355 228 KIIF 231 (314)
Q Consensus 228 ~~~~ 231 (314)
.++.
T Consensus 225 ~i~~ 228 (244)
T 2ijx_A 225 QLFF 228 (244)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4543
No 30
>3aiz_A DNA polymerase sliding clamp B; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_B*
Probab=99.38 E-value=1.6e-10 Score=101.02 Aligned_cols=189 Identities=12% Similarity=0.129 Sum_probs=137.3
Q ss_pred cccccEEEEEECCEEEEEEecCeEEEEEEEEeee---e----ccceEEEEechHHHHHHhcCCCCCcEEEEEeC--CEEE
Q psy13355 30 PILSNILVCKNSEKISFLSTDTEVQITTYTAVGY---G----NSSINIIVAARKFIDILRSLPETEKVTIYIEN--KHMF 100 (314)
Q Consensus 30 pil~~i~i~~~~~~l~l~atd~~~~~~~~~~~~~---~----~~~G~~~v~~k~l~~iik~l~~~~~v~l~~~~--~~l~ 100 (314)
|++.++++++.+++|++.|||+...+.+.+.... . +.+-.+.++.+.|.++++.+ +++.|++..++ +++.
T Consensus 21 ~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~i~~~~~l~~l~kil~~~-~~~~v~i~~~~~~~~l~ 99 (248)
T 3aiz_A 21 KVTDEIILNFTEDSIFSRYLTDDKVLMVIFKIPKEYLEDYTIDKPLGIKININDLKKILGKA-KSKSATVTLEETEAGLK 99 (248)
T ss_dssp TCCSEEEEEECSSEEEEEEECTTSSEEEEEEEEGGGCEEEECSSCEEEEEEHHHHHHHHHTC-SSTTCEEEEEECSSEEE
T ss_pred HHHheEEEEEccCcEEEEEECCCCEEEEEEEECHHhCceEEcCCCeEEEEEHHHHHHHHhhc-CCCEEEEEEeCCCCeEE
Confidence 4678999999999999999998754444443321 1 01246788888899999866 33348888865 8999
Q ss_pred EEECC------eEEEEecCCCCCCCCCcCCC-CCceEEEEeHHHHHHHHhhhccccccccccceeeeEEEEEECCEEEEE
Q psy13355 101 IKSGK------SKFTLQTLDAKEYPIMTLNS-KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAV 173 (314)
Q Consensus 101 I~~g~------~~~~l~~~~~~~fP~~~~~~-~~~~~~~v~~~~l~~~i~~v~~a~s~~~~~~~l~gv~l~~~~~~l~~~ 173 (314)
+..++ ..|.++.+++ +||+++.++ +....+.+++..|+++++++... +.+ |.|.++++.+.+.
T Consensus 100 ~~~~~~~~~~~~~~~~rlidg-~~p~~~iP~~~~~~~v~~~~~~l~~av~r~~~~-s~~--------V~i~~~~~~l~ls 169 (248)
T 3aiz_A 100 VTVRDEKTGTRSNIYIKGEKT-SIDQLTEPKVNLSVTFTTDGDVLKDIARDLSLV-GEE--------VEISADENTVTLS 169 (248)
T ss_dssp EEEEETTTTEEEEEEEECEEE-CCCCCCCCCCCCSEEEEECHHHHHHHHHHHTTS-CSE--------EEEEECSSEEEEE
T ss_pred EEEEeCCCCEEEEEEEEcccc-CcccCCCCCCCccEEEEEeHHHHHHHHHHHHhc-CCE--------EEEEEeCCEEEEE
Confidence 99887 8999999875 789887553 34789999999999999999754 322 8899989999988
Q ss_pred Eeccc-eEEEEEEe-----cCCCCCCcceEEEehhhHHHHHhhhcCCCCcEEEEEeCcE-EEEEE
Q psy13355 174 SSDGH-RLTYYQVN-----IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQ-IKIIF 231 (314)
Q Consensus 174 aTDg~-Rl~~~~~~-----~~~~~~~~~~~iip~~~l~~l~k~l~~~~~~v~i~~~~~~-~~~~~ 231 (314)
|. +. --+...++ ......++..+.+..++|.+++|.++- +++|.++++++. +.++.
T Consensus 170 ~~-~d~g~~~~~~~~~~~~~~~~~ge~~~i~fn~~yL~d~lk~~~~-s~~V~l~~~~~~p~~i~~ 232 (248)
T 3aiz_A 170 TE-EAGRTYKSLLKQDKPLKSLNVESPSKAVYSIEVLKDVFKVTSI-SQNVTVGFGNNIPMKIEV 232 (248)
T ss_dssp EE-ETTEEEEEEEEETBEESEEEESSCEEEEEEHHHHHHHHHHGGG-CSSEEEEEETTEEEEEEE
T ss_pred EE-ccCceEEEEEcCCCcceEEecCCceEEEEEHHHHHHHhhhccC-CCeEEEEEcCCCCEEEEE
Confidence 75 33 11233333 221101268999999999999999872 368999998664 55553
No 31
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A
Probab=99.38 E-value=3.8e-10 Score=100.25 Aligned_cols=203 Identities=8% Similarity=0.126 Sum_probs=148.1
Q ss_pred Ee-ehHHHHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEecCeEEEE--EEEEeeee-----ccceEEEEechHH
Q psy13355 6 NT-EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQIT--TYTAVGYG-----NSSINIIVAARKF 77 (314)
Q Consensus 6 ~i-~~~~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~atd~~~~~~--~~~~~~~~-----~~~G~~~v~~k~l 77 (314)
.+ +...|.++++.+. |++.++++++.+++|.+.|+|+...+. ..++.+.. +.+-.+.++.+.|
T Consensus 25 ~~~~~~~lk~ii~~~~---------~il~~v~~~~~~~gl~~vAtD~~rla~~~~~l~~~~f~~y~~~~~i~~~i~l~~l 95 (276)
T 2zvv_A 25 RLVQGSLLKKVLESIK---------DLVNDANFDCSSTGFSLQAMDSSHVALVSLLLRSEGFEHYRCDRNLSMGMNLGNM 95 (276)
T ss_dssp EESCTHHHHHHHHHHT---------TTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHH
T ss_pred EeCChHHHHHHHHHHH---------HHhceEEEEEECCeEEEEEECCCCEEEEEEEEChhhCcEEEcCCCEEEEEEHHHH
Confidence 44 6667777777733 567899999999999999999765333 33433211 1234689999999
Q ss_pred HHHHhcCCCCCcEEEEEe--CCEEEEEECC------eEEEEecCCCCCCCCCcCCC-CCceEEEEeHHHHHHHHhhhccc
Q psy13355 78 IDILRSLPETEKVTIYIE--NKHMFIKSGK------SKFTLQTLDAKEYPIMTLNS-KYDFEFTLSQKTLKCILNMVYFS 148 (314)
Q Consensus 78 ~~iik~l~~~~~v~l~~~--~~~l~I~~g~------~~~~l~~~~~~~fP~~~~~~-~~~~~~~v~~~~l~~~i~~v~~a 148 (314)
.++++...+++.|+|..+ ++.+.+..++ ..|.++.++. +||++..++ +....+.+++..|+++++++...
T Consensus 96 ~kilk~~~~~d~v~i~~~~~~~~l~~~~~~~~~~~~~~~~~rLid~-~~p~~~iP~~~~~~~i~~~~~~l~~av~r~~~~ 174 (276)
T 2zvv_A 96 SKMLKCAGNDDIITIKADDGGDTVTFMFESPTQDKIADFEMKLMDI-DSEHLGIPDAEYHSIVRMPSNEFSRICKDLSSI 174 (276)
T ss_dssp HHHHHTSCTTCEEEEEECTTCSEEEEEEECTTSSCEEEEEEECCCE-ECCCCCCCCCCCSEEEEEEHHHHHHHHHHHHTT
T ss_pred HHHHhhCCCCCeEEEEEcCCCCeEEEEEEeCCCceEEEEEEEcccC-CcccCCCCCCcccEEEEEEHHHHHHHHHHHHhh
Confidence 999998865555999987 6789998877 8999999985 678886553 34789999999999999999744
Q ss_pred cccccccceeeeEEEEEECCEEEEEEeccceEEEEEEecCC-------------CCCCcceEEEehhhHHHHHhhhcCCC
Q psy13355 149 IAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDK-------------KFSSCSDIIIPRKTVFTLQRLLENKE 215 (314)
Q Consensus 149 ~s~~~~~~~l~gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~-------------~~~~~~~~iip~~~l~~l~k~l~~~~ 215 (314)
+ + .|.|.++++.+.+.|. |. +......+.. ...++..+.+..++|.+++|.++- .
T Consensus 175 -s-d-------~V~i~~~~~~l~lsa~-gd-~g~~~~~l~~~~~~~~~~~~~~~~~ge~~~i~fn~~YL~d~lka~~l-s 242 (276)
T 2zvv_A 175 -G-D-------TVVISVTKEGVKFSTA-GD-IGTANIVLRQNTTVDKPEDAIVIEMKEPVSLSFALRYMNSFTKATPL-S 242 (276)
T ss_dssp -C-S-------EEEEEEETTEEEEEEE-ET-TEEEEEEECCCSSCCSGGGCCEEEESSCEEEEEEHHHHHHHGGGGGG-C
T ss_pred -C-C-------EEEEEEeCCEEEEEEE-ee-ccEEEEEEccCCCCCCccccEEEecCCcEEEEEEHHHHHHHhccccC-C
Confidence 3 2 1889999999998874 43 2333333221 101257899999999999999872 3
Q ss_pred CcEEEEEeCcE-EEEE
Q psy13355 216 NPVELKISNNQ-IKII 230 (314)
Q Consensus 216 ~~v~i~~~~~~-~~~~ 230 (314)
++|.++++++. +.++
T Consensus 243 ~~V~i~l~~~~Pl~l~ 258 (276)
T 2zvv_A 243 DTVTISLSSELPVVVE 258 (276)
T ss_dssp SEEEEEECTTSCEEEE
T ss_pred CEEEEEEcCCceEEEE
Confidence 78999998653 4443
No 32
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=99.36 E-value=6.4e-10 Score=97.05 Aligned_cols=202 Identities=12% Similarity=0.115 Sum_probs=146.5
Q ss_pred ehHHHHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEecCeEEE--EEEEEeee-----eccceE-EEEechHHHH
Q psy13355 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQI--TTYTAVGY-----GNSSIN-IIVAARKFID 79 (314)
Q Consensus 8 ~~~~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~atd~~~~~--~~~~~~~~-----~~~~G~-~~v~~k~l~~ 79 (314)
+...|.++++.+..++ .++.+++.+++|.++|+|+...+ ...++.+. ...+-. +.++...|.+
T Consensus 8 ~a~~~k~i~~ai~~i~---------~~~~~~~~~~gl~~~A~D~~rval~~~~l~~~~F~~y~~~~~~~i~gi~l~~l~k 78 (245)
T 3fds_D 8 DAVSFSYILRTVGDFL---------SEANFIVTKEGIRVSGIDPSRVVFLDIFLPSSYFEGFEVSQEKEIIGFKLEDVND 78 (245)
T ss_dssp CHHHHHHHHHHHHTTC---------SEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGEEEEEESSSCEEEEEEHHHHHH
T ss_pred cHHHHHHHHHHHHHHh---------ceEEEEEcCCeEEEEEECCCCEEEEEEEEChHhCEEEEeCCccEEEEEEHHHHHH
Confidence 5666777777776654 59999999999999999987644 44444322 112345 7789999999
Q ss_pred HHhcCCCCCcEEEEEeCCEEEEEECCe---EEEEecCCCCCCCCCcCCC-CCceEEEEeHHHHHHHHhhhcccccccccc
Q psy13355 80 ILRSLPETEKVTIYIENKHMFIKSGKS---KFTLQTLDAKEYPIMTLNS-KYDFEFTLSQKTLKCILNMVYFSIAQQDIR 155 (314)
Q Consensus 80 iik~l~~~~~v~l~~~~~~l~I~~g~~---~~~l~~~~~~~fP~~~~~~-~~~~~~~v~~~~l~~~i~~v~~a~s~~~~~ 155 (314)
+++....++.|+|+.+++++.+..++. .|.++.+++ +||+++.++ +....+.+++..|+++++++... + +
T Consensus 79 iL~~~~~~d~v~i~~~~~~l~~~~~~~~~~~~~~rLid~-~~~~~~iP~~~~~~~v~~~s~~f~~~i~~~~~~-s-~--- 152 (245)
T 3fds_D 79 ILKRVLKDDTLILSSNESKLTLTFDGEFTRSFELPLIQV-ESTQPPSVNLEFPFKAQLLTITFADIIDELSDL-G-E--- 152 (245)
T ss_dssp HHTTCCTTCEEEEEECSSEEEEEEESSSEEEEEEECCCC-CCCCC----CCCSEEEEEEHHHHHHHHHHHTTT-C-S---
T ss_pred HHHhcCCCCEEEEEEeCCEEEEEEecCceEEEEEEeecC-CcccCCCCCcceEEEEEEEHHHHHHHHHHHHhc-C-C---
Confidence 998876555699999889999999887 899999976 678876442 23688999999999999998743 3 2
Q ss_pred ceeeeEEEEEECCEEEEEEe-ccceEEEEEEecCC----CC-CCcceEEEehhhHHHHHhhhcCCCCcEEEEEeCcE-EE
Q psy13355 156 YYLNGLLLSFQKKNIIAVSS-DGHRLTYYQVNIDK----KF-SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQ-IK 228 (314)
Q Consensus 156 ~~l~gv~l~~~~~~l~~~aT-Dg~Rl~~~~~~~~~----~~-~~~~~~iip~~~l~~l~k~l~~~~~~v~i~~~~~~-~~ 228 (314)
.|.|.++++.+++.|. |.-. +...++... .. .++.......++|.++.|.++. +++|+|+++++. +.
T Consensus 153 ----~V~i~~~~~~l~~s~~gd~g~-~~~~l~~~~~~~~~~~~e~~~~~F~~~YL~~~~ka~~~-s~~V~i~~~~~~Pl~ 226 (245)
T 3fds_D 153 ----VLNIHSKENKLYFEVIGDLST-AKVELSTDNGTLLEASGADVSSSYGMEYVANTTKMRRA-SDSMELYFGSQIPLK 226 (245)
T ss_dssp ----EEEEEEETTEEEEEEECSSCE-EEEEECTTSSSCSEEEECCCEEEEEHHHHHHGGGGGGT-CSEEEEEECTTSCEE
T ss_pred ----EEEEEEeCCEEEEEEEecCcE-EEEEEcCCCCceEEEecceEEEEEEHHHHHHHhhhccc-CCEEEEEecCCccEE
Confidence 6999999999988875 3221 333332210 00 1368899999999999999874 478999998653 44
Q ss_pred EE
Q psy13355 229 II 230 (314)
Q Consensus 229 ~~ 230 (314)
++
T Consensus 227 l~ 228 (245)
T 3fds_D 227 LR 228 (245)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 33
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2
Probab=99.31 E-value=2.6e-10 Score=99.41 Aligned_cols=203 Identities=13% Similarity=0.180 Sum_probs=137.1
Q ss_pred ehHHHHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEecCeEEEEEEEEeeee-ccceEE---EEechHHHHHHhc
Q psy13355 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG-NSSINI---IVAARKFIDILRS 83 (314)
Q Consensus 8 ~~~~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~atd~~~~~~~~~~~~~~-~~~G~~---~v~~k~l~~iik~ 83 (314)
+...|.++++.+.. ++.++++++.+++|++.|||+...+.+.+..... .++-.+ ++|++.+.++.|-
T Consensus 7 ~~~~~k~i~~~i~~---------~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~i~~~~~l~~l~ki 77 (245)
T 1ud9_A 7 DVRDLKAIIQALLK---------LVDEALFDIKPEGIQLVAIDKAHISLIKIELPKEMFKEYDVPEEFKFGFNTQYMSKL 77 (245)
T ss_dssp CHHHHHHHHHHHHH---------HCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEECSSCEEEEEEHHHHHHH
T ss_pred chHHHHHHHHHHHH---------HhceEEEEEcCCeEEEEEECCCcEEEEEEEEChHhCeEEEcCCCeEEEEEHHHHHHH
Confidence 55666666666655 4679999999999999999987644444433221 012112 3444544444444
Q ss_pred C---CCCCcEEEEEeCC--EEEEEECC--eEEEEecCCCCCCCCCcCCC-CCceEEEEeHHHHHHHHhhhcccccccccc
Q psy13355 84 L---PETEKVTIYIENK--HMFIKSGK--SKFTLQTLDAKEYPIMTLNS-KYDFEFTLSQKTLKCILNMVYFSIAQQDIR 155 (314)
Q Consensus 84 l---~~~~~v~l~~~~~--~l~I~~g~--~~~~l~~~~~~~fP~~~~~~-~~~~~~~v~~~~l~~~i~~v~~a~s~~~~~ 155 (314)
| ..++.|+|..+++ ++.+..|+ ..|.++.+++ +||+++.++ +....+.+++..|+++++++... +.+
T Consensus 78 L~~~~~~~~v~i~~~~~~~~l~~~~~~~~~~~~~rlidg-~~p~~~ip~~~~~~~i~i~~~~l~~a~~r~~~~-s~~--- 152 (245)
T 1ud9_A 78 LKAAKRKEEIIIDADSPEVVKLTLSGALNRVFNVNNIEV-LPPEVPEVNLEFDIKATINASGLKNAIGEIAEV-ADT--- 152 (245)
T ss_dssp HTTCCSCCCEEEEEEETTEEEEEECSSSCEEEEEECCCC-CCCCCC---CCCSEEEEEEHHHHHHHHHHHHHH-CSE---
T ss_pred HhcCCCCCEEEEEEcCCCCEEEEEECCEEEEEEEECccc-CcccCCCCCCCccEEEEEeHHHHHHHHHHHHhc-CCE---
Confidence 4 3333499998766 99999999 9999999985 789887553 34789999999999999999754 322
Q ss_pred ceeeeEEEEEECCEEEEEEeccceEEEEEEe------cCCCCCCcceEEEehhhHHHHHhhhcCCCCcEEEEEeCcE-EE
Q psy13355 156 YYLNGLLLSFQKKNIIAVSSDGHRLTYYQVN------IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQ-IK 228 (314)
Q Consensus 156 ~~l~gv~l~~~~~~l~~~aTDg~Rl~~~~~~------~~~~~~~~~~~iip~~~l~~l~k~l~~~~~~v~i~~~~~~-~~ 228 (314)
|.|.++++.+.+.+ ++..-....++ ......++..+.+..++|.+++|.++- +++|.++++++. +.
T Consensus 153 -----V~l~~~~~~l~ls~-~~d~g~~~~l~~~~~~~~~~~~ge~~~i~Fn~~yL~d~lk~~~~-s~~V~l~~~~~~p~~ 225 (245)
T 1ud9_A 153 -----LLISGNEEKVVVKG-EGENKVEVEFSKDTGSLADIEFNKESSSAYDVEYLNDIISLTKL-SDYVKVAFADQKPMQ 225 (245)
T ss_dssp -----EEEEECSSEEEEEE-SSSSCCCEEEEGGGTCEEEEEESSCEEEEEEHHHHHHTGGGGGG-CSEEEEEECTTSCEE
T ss_pred -----EEEEEECCEEEEEE-EccCceEEEEecCCCccEEEEeCCceeEEEEHHHHHHHhhhccc-CCEEEEEEcCCCCEE
Confidence 88999899998886 44321112222 111101268999999999999999872 378999998643 55
Q ss_pred EEE
Q psy13355 229 IIF 231 (314)
Q Consensus 229 ~~~ 231 (314)
++.
T Consensus 226 i~~ 228 (245)
T 1ud9_A 226 LEF 228 (245)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 34
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity; 2.30A {Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2 PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3v60_B 3v61_B 3v62_B* 3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3pge_B 3l0x_B
Probab=99.29 E-value=2.9e-09 Score=93.45 Aligned_cols=202 Identities=13% Similarity=0.182 Sum_probs=145.4
Q ss_pred ehHHHHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEecCeEEEE--EEEEeeee-----ccceEEEEechHHHHH
Q psy13355 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQIT--TYTAVGYG-----NSSINIIVAARKFIDI 80 (314)
Q Consensus 8 ~~~~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~atd~~~~~~--~~~~~~~~-----~~~G~~~v~~k~l~~i 80 (314)
+.+.|.+.++.+.. ++.++++++.+++|.+.|+|+...+. ..++.+.. +.+-.+.++.+.|.++
T Consensus 8 ~~~~~~~i~~~i~~---------i~~~v~~~~~~~gl~~~a~D~~rla~~~~~l~~~~F~~y~~~~~~~~~i~l~~l~ki 78 (258)
T 1plq_A 8 EASLFKRIIDGFKD---------CVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKI 78 (258)
T ss_dssp SHHHHHHHHHHHTT---------TCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEECCSSCEEEEEEHHHHHHH
T ss_pred chHHHHHHHHHHHH---------HhceEEEEEcCCceEEEEECCCcEEEEEEEECHHhCcEEEeCCCeEEEEEHHHHHHH
Confidence 55666666666654 45699999999999999999775433 33333221 1124688999999999
Q ss_pred HhcCCCCCcEEEEEeC--CEEEEEECC------eEEEEecCCCCCCCCCcCCC-CCceEEEEeHHHHHHHHhhhcccccc
Q psy13355 81 LRSLPETEKVTIYIEN--KHMFIKSGK------SKFTLQTLDAKEYPIMTLNS-KYDFEFTLSQKTLKCILNMVYFSIAQ 151 (314)
Q Consensus 81 ik~l~~~~~v~l~~~~--~~l~I~~g~------~~~~l~~~~~~~fP~~~~~~-~~~~~~~v~~~~l~~~i~~v~~a~s~ 151 (314)
+|...+++.|+|..++ +.+.+..++ ..|.++.+++ +||++..++ +....+.+++..|+++++++... +
T Consensus 79 l~~~~~~d~v~i~~~~~~~~l~~~~~~~~~~~~~~~~~rlie~-~~~~~~ip~~~~~~~i~~~~~~l~~av~r~~~~-s- 155 (258)
T 1plq_A 79 LRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDI-DADFLKIEELQYDSTLSLPSSEFSKIVRDLSQL-S- 155 (258)
T ss_dssp TTCSTTTSEEEEEECSSCSEEEEEEECSSSSCEEEEEEECBCC-CCCCCCCCCSCCSEEEEEEHHHHHHHHHHHHTT-C-
T ss_pred HhcCCCCCEEEEEecCCCCeEEEEEEcCCCCeEEEEEEEcccC-CcccCCCCCCCccEEEEEeHHHHHHHHHHHHhc-C-
Confidence 9988655559999875 789988877 8999999985 678886553 34789999999999999999744 3
Q ss_pred ccccceeeeEEEEEECCEEEEEEeccceEEEEEEecCC-------------CCCCcceEEEehhhHHHHHhhhcCCCCcE
Q psy13355 152 QDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDK-------------KFSSCSDIIIPRKTVFTLQRLLENKENPV 218 (314)
Q Consensus 152 ~~~~~~l~gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~-------------~~~~~~~~iip~~~l~~l~k~l~~~~~~v 218 (314)
+ .|.|.++++.+.+.|. |. +......+.. ...++..+.+..++|.+.+|.++- .+.|
T Consensus 156 ~-------~v~i~~~~~~l~ls~~-~d-~g~~~~~l~~~~~~~~~~~~~~~~~ge~~~i~f~~~yL~~~lka~~~-s~~V 225 (258)
T 1plq_A 156 D-------SINIMITKETIKFVAD-GD-IGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSL-SDRV 225 (258)
T ss_dssp S-------EEEEEEETTEEEEEEE-CS-SCEEEEEECCBCCTTCGGGCBEEEESSCEEEEEEHHHHHHHGGGGGT-CSEE
T ss_pred C-------EEEEEEECCEEEEEEE-cc-CceEEEEEecCCCCCCCccceEEecCCcEEEEEEHHHHHHHhccccC-CceE
Confidence 2 1889999999988873 32 2332322220 101257899999999999999872 3789
Q ss_pred EEEEeCcE-EEEEE
Q psy13355 219 ELKISNNQ-IKIIF 231 (314)
Q Consensus 219 ~i~~~~~~-~~~~~ 231 (314)
.+++.++. +.++.
T Consensus 226 ~i~~~~~~Pl~l~~ 239 (258)
T 1plq_A 226 GIRLSSEAPALFQF 239 (258)
T ss_dssp EEEECSSSCEEEEE
T ss_pred EEEECCCCCEEEEE
Confidence 99998653 44444
No 35
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis}
Probab=99.29 E-value=2.6e-09 Score=93.96 Aligned_cols=204 Identities=10% Similarity=0.120 Sum_probs=147.0
Q ss_pred CeEeEEee-hHHHHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEecCeEEE--EEEEEeee-----eccceEEEE
Q psy13355 1 MQLVVNTE-KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQI--TTYTAVGY-----GNSSINIIV 72 (314)
Q Consensus 1 Mk~~~~i~-~~~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~atd~~~~~--~~~~~~~~-----~~~~G~~~v 72 (314)
|.|...+. .+.|.++++.++.++ .++.+++.+++|.++|+|+...+ ...++.+. .+++-.+.+
T Consensus 1 m~f~a~~~~a~~lk~ii~ai~~i~---------~~v~~~~~~~gl~~~A~D~~rvalv~~~l~~~~F~~y~~~~~~~igi 71 (259)
T 3lx2_A 1 MTFEIVFDSAREFESLIATLEKFF---------DEAVFQVNMEGIQMRAIDPSRVVLVDLNLPEMLFSKYSVESEEAIAF 71 (259)
T ss_dssp -CEEEEESCHHHHHHHHHHHHTTC---------SEEEEEECSSEEEEEEECTTSCEEEEEEEEGGGSSEEEESSCEEEEE
T ss_pred CeEEEEECcHHHHHHHHHHHHHHh---------ceEEEEEecCeEEEEEECCCCEEEEEEEEChHhcEEEEcCCCEEEEE
Confidence 55533444 566666666666544 59999999999999999977543 44555322 123456899
Q ss_pred echHHHHHHhcCCCCCcEEEEEe-CCEEEEEECC---eEEEEecCCCCCCCCCcCCC-CCceEEEEeHHHHHHHHhhhcc
Q psy13355 73 AARKFIDILRSLPETEKVTIYIE-NKHMFIKSGK---SKFTLQTLDAKEYPIMTLNS-KYDFEFTLSQKTLKCILNMVYF 147 (314)
Q Consensus 73 ~~k~l~~iik~l~~~~~v~l~~~-~~~l~I~~g~---~~~~l~~~~~~~fP~~~~~~-~~~~~~~v~~~~l~~~i~~v~~ 147 (314)
+.+.|.+++|..+.++.|+|..+ ++++.+..++ ..|.++.+++ +||+++.++ +....+.+++..|+++++++..
T Consensus 72 ~l~~L~kiLk~~~~~d~v~i~~~~~~~l~~~~e~~~~~~~~~rLid~-~~~~~~iP~~e~~~~v~~~s~~f~~~i~~~~~ 150 (259)
T 3lx2_A 72 DLKRFLKVLKLARSRDTLVLRKGGENFLEVGLLGDENTWFKLPLIDA-NTPEIEIPSLPWTVKAVVLAGALKRAVKAAKL 150 (259)
T ss_dssp EHHHHHHHHTTCCTTCEEEEEECSSSEEEEEEESSSEEEEEEECCCC-CCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHH
T ss_pred EHHHHHHHHHhcCCCCEEEEEECCCCEEEEEEecCceEEEEEEeecc-CcccCCCCCCceeEEEEEEHHHHHHHHHHHHh
Confidence 99999999999876666999955 4899999988 8999999986 577765442 2378999999999999999874
Q ss_pred ccccccccceeeeEEEEEECCEEEEEEeccceEEEEEEecCC--------CCC-CcceEEEehhhHHHHHhhhcCCCCcE
Q psy13355 148 SIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDK--------KFS-SCSDIIIPRKTVFTLQRLLENKENPV 218 (314)
Q Consensus 148 a~s~~~~~~~l~gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~--------~~~-~~~~~iip~~~l~~l~k~l~~~~~~v 218 (314)
. +. -|.|.++++.+.+.+. |. +...+..+.. ... ++.......++|.+..|.++. +++|
T Consensus 151 ~-sd--------~V~i~~~~~~v~~ss~-gd-~G~~~~~l~~~~~~~~~~~~~~e~~~~~F~~~YL~~~~Ka~~~-s~~V 218 (259)
T 3lx2_A 151 V-SD--------SIYFMATPEKLTFKAE-GN-DSEVRTVLTMEDPGLLDLEHKMTKAKSAYGVAYLEDILRSLAD-ADEV 218 (259)
T ss_dssp H-CS--------EEEEEECSSCEEEEEE-CS-SCEEEEEECTTSTTEEEEEESSSCEEEEEEHHHHHHHHSSSCT-TSEE
T ss_pred c-CC--------EEEEEEECCEEEEEEE-ec-CcEEEEEEcCCCCceEEEEecCceEEEEEEHHHHHhhhccccC-CCeE
Confidence 3 32 3888888888888773 22 2222322211 101 268899999999999999864 4689
Q ss_pred EEEEeCcE
Q psy13355 219 ELKISNNQ 226 (314)
Q Consensus 219 ~i~~~~~~ 226 (314)
+|+++++.
T Consensus 219 ~l~~~~~~ 226 (259)
T 3lx2_A 219 IIRFGFDI 226 (259)
T ss_dssp EEEECTTS
T ss_pred EEEeCCCC
Confidence 99998653
No 36
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A* 3p87_A 3vkx_A*
Probab=99.28 E-value=4.5e-09 Score=92.38 Aligned_cols=201 Identities=10% Similarity=0.141 Sum_probs=145.7
Q ss_pred ehHHHHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEecCeEEEE--EEEEeeee-----ccceEEEEechHHHHH
Q psy13355 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQIT--TYTAVGYG-----NSSINIIVAARKFIDI 80 (314)
Q Consensus 8 ~~~~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~atd~~~~~~--~~~~~~~~-----~~~G~~~v~~k~l~~i 80 (314)
+...|.+.++.+.. ++.++++++.+++|.+.|+|+...+. ..++.+.. +.+-.+.++.+.|.++
T Consensus 8 ~~~~~k~i~~~i~~---------il~~v~~~~~~~gl~~~a~D~~rla~~~~~l~~~~f~~y~~~~~i~~~i~l~~l~ki 78 (261)
T 1u7b_A 8 QGSILKKVLEALKD---------LINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKI 78 (261)
T ss_dssp CTHHHHHHHHHHHT---------TCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHH
T ss_pred chHHHHHHHHHHHH---------HhcEEEEEEeCCceEEEEECCCCEEEEEEEECHHhCeEEEeCCCeEEEEEHHHHHHH
Confidence 56666667766665 46799999999999999999775333 33333211 1234688999999999
Q ss_pred HhcCCCCCcEEEEEe--CCEEEEEECC------eEEEEecCCCCCCCCCcCCC-CCceEEEEeHHHHHHHHhhhcccccc
Q psy13355 81 LRSLPETEKVTIYIE--NKHMFIKSGK------SKFTLQTLDAKEYPIMTLNS-KYDFEFTLSQKTLKCILNMVYFSIAQ 151 (314)
Q Consensus 81 ik~l~~~~~v~l~~~--~~~l~I~~g~------~~~~l~~~~~~~fP~~~~~~-~~~~~~~v~~~~l~~~i~~v~~a~s~ 151 (314)
+|...+++.|+|..+ ++.+.+..+. ..|.++.+++ +||.++.+. +....+.+++..|+++++++... +.
T Consensus 79 l~~~~~~d~v~i~~~~~~~~l~~~~~~~~~~~~~~~~~rlie~-~~~~~~iP~~~~~~~i~~~~~~l~~ai~r~~~~-s~ 156 (261)
T 1u7b_A 79 LKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDL-DVEQLGIPEQEYSCVVKMPSGEFARICRDLSHI-GD 156 (261)
T ss_dssp HTTSCTTCEEEEEECTTCSEEEEEEECTTSSCEEEEEEECCCC-CCCCCBCCCCCCSEEEEEEHHHHHHHHHHHHTT-CS
T ss_pred HhcCCCCCEEEEEecCCCCEEEEEEEcCCCCeEEEEEEECccC-CcccCCCCCCcccEEEEEEHHHHHHHHHHHHhc-CC
Confidence 998865545999987 5789988877 8999999985 678875443 33789999999999999999744 32
Q ss_pred ccccceeeeEEEEEECCEEEEEEeccceEEEEEEecCC-------------CCCCcceEEEehhhHHHHHhhhcCCCCcE
Q psy13355 152 QDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDK-------------KFSSCSDIIIPRKTVFTLQRLLENKENPV 218 (314)
Q Consensus 152 ~~~~~~l~gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~-------------~~~~~~~~iip~~~l~~l~k~l~~~~~~v 218 (314)
. |.|.++++.+.+.|. |. +......+.. ...++..+.+..++|.+++|.++- .+.|
T Consensus 157 ~--------v~i~~~~~~l~ls~~-~d-~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~i~f~~~yL~~~lka~~~-s~~V 225 (261)
T 1u7b_A 157 A--------VVISCAKDGVKFSAS-GE-LGNGNIKLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPL-SSTV 225 (261)
T ss_dssp E--------EEEEEETTEEEEEEE-ET-TEEEEEEECCCC----CCSCCEEEESSCEEEEEEHHHHHHHGGGGGG-CSEE
T ss_pred E--------EEEEEECCEEEEEEE-ec-CceEEEEEecCCCCCCCccceEEecCCcEEEEEeHHHHHHHhCcccC-CCeE
Confidence 1 889989999988874 43 2222322220 101257899999999999999862 3789
Q ss_pred EEEEeCcE-EEEE
Q psy13355 219 ELKISNNQ-IKII 230 (314)
Q Consensus 219 ~i~~~~~~-~~~~ 230 (314)
.++++++. +.++
T Consensus 226 ~i~~~~~~P~~l~ 238 (261)
T 1u7b_A 226 TLSMSADVPLVVE 238 (261)
T ss_dssp EEEECTTSCEEEE
T ss_pred EEEECCCCCEEEE
Confidence 99998653 4444
No 37
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A
Probab=99.13 E-value=1e-08 Score=89.45 Aligned_cols=197 Identities=9% Similarity=0.120 Sum_probs=131.8
Q ss_pred EeehHHHHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEecCeEE--EEEEEEeeee-----ccceEEEEechHHH
Q psy13355 6 NTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQ--ITTYTAVGYG-----NSSINIIVAARKFI 78 (314)
Q Consensus 6 ~i~~~~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~atd~~~~--~~~~~~~~~~-----~~~G~~~v~~k~l~ 78 (314)
+++...|.++++.+..+ +.++.+++.+++|.++|+|+... +...++.+.- .+.- +.++...|.
T Consensus 5 ~~~a~~~k~i~~ai~~i---------~~~v~~~~~~~gl~~~A~D~~rvalv~~~l~~~~F~~y~~~~~v-~g~~l~~l~ 74 (247)
T 3ifv_A 5 IVSAATLRDALDSVSVL---------VDECKIRLNEESLSIRAVDPANVGMVDLTLDAAAFESYEAHGGV-IGVNLSRLE 74 (247)
T ss_dssp EECHHHHHHHHHHHHTT---------CSSEEEC---CEEEEEEECTTSSEEEEEEEEGGGSSBC-----C-EEECHHHHH
T ss_pred EEcHHHHHHHHHHHHHH---------hcEEEEEEeCCeEEEEEECCccEEEEEEEEchhcCeEEEccCcE-EEEEHHHHH
Confidence 67888888888888854 45999999999999999997753 4455554321 1233 777888888
Q ss_pred HHHhcCCCCCcEEEEEeC--CEEEEEECCeEEEEecCCCCCCC----CCcCCCCCceEEEEeHHHHHHHHhhhccccccc
Q psy13355 79 DILRSLPETEKVTIYIEN--KHMFIKSGKSKFTLQTLDAKEYP----IMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQ 152 (314)
Q Consensus 79 ~iik~l~~~~~v~l~~~~--~~l~I~~g~~~~~l~~~~~~~fP----~~~~~~~~~~~~~v~~~~l~~~i~~v~~a~s~~ 152 (314)
++++....++.|+|..++ +++.++.++..|.++.+++ +|| .+|..+. ...+.+++..|+++++++... + +
T Consensus 75 kiL~~~~~~d~v~i~~~~~~~~l~~~~~~~~~~~rLid~-~~~~~~~~iP~~e~-~~~v~~~s~~f~~~i~~~~~~-s-d 150 (247)
T 3ifv_A 75 EVAGMAGAGDLIHLTLDEETRKLNIRIDGLSYTLALIDP-DSIRQEPDIPDLDL-AANIVLEGTHLDRGIKAADMV-S-D 150 (247)
T ss_dssp HHHTTC----CEEECC-------EEEETTEEEEC---CT-TC----CCCCCCCC-SEEEEEEHHHHHHHHHHHHHH-C-S
T ss_pred HHHhcCCCCCEEEEEEcCCCCEEEEEEeCcEEEEEeecc-cccccCCCCCCCCc-eEEEEEEHHHHHHHHHHHHhh-C-C
Confidence 888877544459998764 6899999999999999987 465 3554443 689999999999999998743 3 2
Q ss_pred cccceeeeEEEEEE--CCEEEEEEeccceEEEEEEecCC-----CCCCcceEEEehhhHHHHHhhhcCCCCcEEEEEeCc
Q psy13355 153 DIRYYLNGLLLSFQ--KKNIIAVSSDGHRLTYYQVNIDK-----KFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNN 225 (314)
Q Consensus 153 ~~~~~l~gv~l~~~--~~~l~~~aTDg~Rl~~~~~~~~~-----~~~~~~~~iip~~~l~~l~k~l~~~~~~v~i~~~~~ 225 (314)
-|.|.++ ++.+++.+. |. +......+.. -..++.......++|.++.|.++- +++|+|+++++
T Consensus 151 -------~V~i~~~~~~~~~~~s~~-gd-~g~~~~~l~~~~~~~~~~e~~~~~F~~~YL~~~~Ka~~~-s~~V~i~~~~~ 220 (247)
T 3ifv_A 151 -------HIRLRVDGAEETFHIEAE-GD-TDDVDLSLPPADLISIEAGAADSLFSLDYLKDMNKAIPT-DAEVTVELGEE 220 (247)
T ss_dssp -------EEEEEEETTTTEEEEEEE-CS-SCEEEEEECGGGCSEEEECCCEEEEEHHHHHHHHHHSCT-TCEEEEEECBS
T ss_pred -------EEEEEEECCCCEEEEEEE-ec-ceEEEEEECCCceEEEecCeEEEEEeHHHHHHhhhhccC-CCEEEEEecCC
Confidence 3888888 778888774 32 2223322220 001368899999999999999873 47899999865
Q ss_pred E
Q psy13355 226 Q 226 (314)
Q Consensus 226 ~ 226 (314)
.
T Consensus 221 ~ 221 (247)
T 3ifv_A 221 F 221 (247)
T ss_dssp S
T ss_pred c
Confidence 3
No 38
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica}
Probab=99.13 E-value=4.7e-08 Score=86.14 Aligned_cols=198 Identities=12% Similarity=0.135 Sum_probs=142.3
Q ss_pred ehHHHHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEecCeEE--EEEEEEeee-----eccceEEEEechHHHHH
Q psy13355 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQ--ITTYTAVGY-----GNSSINIIVAARKFIDI 80 (314)
Q Consensus 8 ~~~~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~atd~~~~--~~~~~~~~~-----~~~~G~~~v~~k~l~~i 80 (314)
+...|.++++.+.. ++.++.+++.+++|.++|+|.... +...++.+. ..++-.+.++.+.|.++
T Consensus 13 ~a~~lk~ii~ai~~---------i~~~v~~~~~~~gl~~~A~D~~rvalv~~~l~~~~F~~y~~d~~~~igi~l~~L~ki 83 (265)
T 3p91_A 13 EAALFKRVVESLKS---------TIDKTNFDCSDAGIAVQCMDNSHVSLVSLLIETDAFDEFQCLKPITLGINLTHLSKI 83 (265)
T ss_dssp CHHHHHHHHHHHHT---------TCSEEEEEEETTEEEEEEECTTSSSEEEEEECGGGEEEEECSSCEEEEEEHHHHHHH
T ss_pred chHHHHHHHHHHHH---------HhceEEEEEeCCeEEEEEECCCcEEEEEEEEChhhceEEEeCCCeEEEEEHHHHHHH
Confidence 56667777776665 456999999999999999997753 445555322 12345689999999999
Q ss_pred HhcCCCCCcEEEEEeC--CEEEEEECC-----eEEEEecCCCCCCCCCcCC-CCCceEEEEeHHHHHHHHhhhccccccc
Q psy13355 81 LRSLPETEKVTIYIEN--KHMFIKSGK-----SKFTLQTLDAKEYPIMTLN-SKYDFEFTLSQKTLKCILNMVYFSIAQQ 152 (314)
Q Consensus 81 ik~l~~~~~v~l~~~~--~~l~I~~g~-----~~~~l~~~~~~~fP~~~~~-~~~~~~~~v~~~~l~~~i~~v~~a~s~~ 152 (314)
+|....++.|+|..++ +++.+..++ ..|.++.+++ +||++..+ .+....+.+++..|+++++++.. ++.+
T Consensus 84 Lk~~~~~d~v~i~~~~~~~~l~~~~e~~~~~~i~~~lrLid~-~~~~~~iP~~e~~~~v~~~s~~f~~~i~~~~~-~s~d 161 (265)
T 3p91_A 84 LKALDNDCGLILDVKKVDDAVLSITSEGTNKTMKFGLNLVDI-EAESVEIPELQSDAIITLSSAEFLKITKDFSA-LGDD 161 (265)
T ss_dssp HTTSCTTSEEEEEECSSSSEEEEEEEC--CCEEEEEEECCCC-CCCCCCCCCCCCSEEEEEEHHHHHHHHHHHHH-HCCS
T ss_pred HhhcCCCCEEEEEEcCCCCeEEEEEEeCCCceEEEEEEeccc-CcccCCCCCCCccEEEEEEHHHHHHHHHHHHh-CCCC
Confidence 9998766669999874 488887755 3899999987 56654333 12368999999999999999874 3422
Q ss_pred cccceeeeEEEEEECCEEEEEEeccceEEEEEEecCC-----------CCCCcceEEEehhhHHHHHhhhcCCCCcEEEE
Q psy13355 153 DIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDK-----------KFSSCSDIIIPRKTVFTLQRLLENKENPVELK 221 (314)
Q Consensus 153 ~~~~~l~gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~-----------~~~~~~~~iip~~~l~~l~k~l~~~~~~v~i~ 221 (314)
-|.|.++++.+.+.+. |. +......+.. ...++.......++|.+..|.++- ++.|.|+
T Consensus 162 -------~V~i~~~~~~v~~ss~-gd-~G~~~~~l~~~~~~~~~~~~~~~~e~~~~~F~~~YL~~~~Ka~~l-s~~V~i~ 231 (265)
T 3p91_A 162 -------SITIGCTKNEVTLTTK-GA-MCETCMTLSALENVDSNGLQIEHNKDVTASFALKQISEFAKSAPL-ADNVKLS 231 (265)
T ss_dssp -------EEEEEECSSEEEEEEE-CS-SCEEEEEEEC-------CCEEEESSCEEEEEEHHHHHHHGGGGGG-CSEEEEE
T ss_pred -------EEEEEEECCEEEEEEE-ec-CceEEEEEecCCCCCCceEEEEcCCcEEEEEEHHHHHHhhccccc-CCEEEEE
Confidence 3788888888888774 32 2222222210 001368899999999999999873 4789999
Q ss_pred EeCcE
Q psy13355 222 ISNNQ 226 (314)
Q Consensus 222 ~~~~~ 226 (314)
++++.
T Consensus 232 ~~~~~ 236 (265)
T 3p91_A 232 LSGQA 236 (265)
T ss_dssp ECSSS
T ss_pred eCCCc
Confidence 98753
No 39
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C*
Probab=98.87 E-value=3.2e-06 Score=73.62 Aligned_cols=205 Identities=11% Similarity=0.081 Sum_probs=141.6
Q ss_pred Ee-ehHHHHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEecCeE--EEEEEEEeee-----eccceEEEEechHH
Q psy13355 6 NT-EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEV--QITTYTAVGY-----GNSSINIIVAARKF 77 (314)
Q Consensus 6 ~i-~~~~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~atd~~~--~~~~~~~~~~-----~~~~G~~~v~~k~l 77 (314)
++ +.+.|.++++.++..++ .+.+++.++++.++|.|... .+...++.+. .+++-++.|+-..|
T Consensus 5 ~~~~a~~lk~ii~ai~~lv~---------e~~~~~~~~Gi~l~amD~s~valv~l~l~~~~F~~Y~~d~~~~~gvnl~~l 75 (249)
T 3fds_C 5 VYPNAKDFFSFINSITNVTD---------SIILNFTEDGIFSRHLTEDKVLMAIMRIPKDVLSEYSIDSPTSVKLDVSSV 75 (249)
T ss_dssp EESCHHHHHHHHHHHTTTCS---------SEEEEECSSEEEEEEECTTSSEEEEEEEEGGGSSEEECSSCEEEEECHHHH
T ss_pred EeCchHHHHHHHHHHHHHhC---------eEEEEEcCCeEEEEEECCCcEEEEEEEECHHhCeEEECCCCeEEEEEHHHH
Confidence 56 67888888888887765 78899999999999998774 4566677542 13456799999999
Q ss_pred HHHHhcCC-CCCcEEEEEeCCEEEEEEC----C--eEEEEecCCCC-CCCCCcCCCCCceEEEEeHHHHHHHHhhhcccc
Q psy13355 78 IDILRSLP-ETEKVTIYIENKHMFIKSG----K--SKFTLQTLDAK-EYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSI 149 (314)
Q Consensus 78 ~~iik~l~-~~~~v~l~~~~~~l~I~~g----~--~~~~l~~~~~~-~fP~~~~~~~~~~~~~v~~~~l~~~i~~v~~a~ 149 (314)
.+++|... .++.+.++.+++.|.|... + .+|.++.++.+ +.|.+|..+- ...+.+++..|.++++.....
T Consensus 76 ~kiLk~~~~~~d~l~~~~~~~~l~i~~e~~~~~~~~~~~l~l~d~~~e~~~~p~~e~-~~~v~m~s~~f~~~~~dl~~~- 153 (249)
T 3fds_C 76 KKILSKASSKKATIELTETDSGLKIIIRDEKSGAKSTIYIKAEKGQVEQLTEPKVNL-AVNFTTDESVLNVIAADVTLV- 153 (249)
T ss_dssp HHHHTTCCCSCEEEEEEECSSEEEEEEEETTTCCEEEEEEECEECCCCCCCCCCCCC-CEEEEECHHHHHHHHHHHHHH-
T ss_pred HHHHHhhCCCCCEEEEecCCCEEEEEEEeCCCCEEEEEEEECCCCccccCCCCCCcc-eEEEEEEHHHHHHHHHHHHHh-
Confidence 99999998 6544666656777776652 2 57999988754 2344555554 789999999999999988643
Q ss_pred ccccccceeeeEEEEEECCEEEEEEeccceEEEEEEecCC-----CCCCcceEEEehhhHHHHHh-hhcCCCCcEEEEEe
Q psy13355 150 AQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDK-----KFSSCSDIIIPRKTVFTLQR-LLENKENPVELKIS 223 (314)
Q Consensus 150 s~~~~~~~l~gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~-----~~~~~~~~iip~~~l~~l~k-~l~~~~~~v~i~~~ 223 (314)
+ + -|.+..+++.+.+.+.-...-+...++... ...++.......++|..+.| ..+- .+.|+|+++
T Consensus 154 s-d-------~v~i~~~~~~~~f~~~gd~~~~~~~~~~~~~l~~~~~~~~~~~~fsl~yL~~~~K~a~~l-s~~V~i~~~ 224 (249)
T 3fds_C 154 G-E-------EMRISTEEDKIKIEAGEEGKRYVAFLMKDKPLKELSIDTSASSSYSAEMFKDAVKGLRGF-SAPTMVSFG 224 (249)
T ss_dssp C-S-------EEEEEEETTEEEEEEEETTEEEEEEEEETBEESEEEESSCCEEEEEHHHHHHHHHTTTTC-CSCEEEEEC
T ss_pred C-C-------EEEEEEECCEEEEEEEecCcEEEEEEcCCCCcEEEEcCCceEEEEEHHHHHHHHhhhccc-CCEEEEEec
Confidence 3 2 256666666666543211111222221111 00126778899999999999 8764 578999998
Q ss_pred CcE-EEEE
Q psy13355 224 NNQ-IKII 230 (314)
Q Consensus 224 ~~~-~~~~ 230 (314)
.+. +.++
T Consensus 225 ~~~Pl~l~ 232 (249)
T 3fds_C 225 ENLPMKID 232 (249)
T ss_dssp TTCCEEEE
T ss_pred CCcCEEEE
Confidence 764 4343
No 40
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C*
Probab=98.64 E-value=6.7e-06 Score=71.54 Aligned_cols=164 Identities=13% Similarity=0.213 Sum_probs=128.5
Q ss_pred EEE-eHHHHHHHHhhhccccccccccceeeeEEEEEECCEEEEEEeccceEEEEEEecCCC------CCCcceEEEehhh
Q psy13355 131 FTL-SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKK------FSSCSDIIIPRKT 203 (314)
Q Consensus 131 ~~v-~~~~l~~~i~~v~~a~s~~~~~~~l~gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~~------~~~~~~~iip~~~ 203 (314)
..+ ++..|+++++.+.-.+ + -++|+++++++.+.|.|..|.+...+.++.. .+.+..+-|+-+.
T Consensus 4 a~~~~a~~lk~ii~ai~~lv--~-------e~~~~~~~~Gi~l~amD~s~valv~l~l~~~~F~~Y~~d~~~~~gvnl~~ 74 (249)
T 3fds_C 4 IVYPNAKDFFSFINSITNVT--D-------SIILNFTEDGIFSRHLTEDKVLMAIMRIPKDVLSEYSIDSPTSVKLDVSS 74 (249)
T ss_dssp EEESCHHHHHHHHHHHTTTC--S-------SEEEEECSSEEEEEEECTTSSEEEEEEEEGGGSSEEECSSCEEEEECHHH
T ss_pred EEeCchHHHHHHHHHHHHHh--C-------eEEEEEcCCeEEEEEECCCcEEEEEEEECHHhCeEEECCCCeEEEEEHHH
Confidence 445 6788888888775332 2 3889999999999999999999988776642 1235679999999
Q ss_pred HHHHHhhhc-CCCCcEEEEEeCcEEEEEEC----C--EEEEEEeccccCCCccccccc-CcceEEEEehHHHHHHHhHHh
Q psy13355 204 VFTLQRLLE-NKENPVELKISNNQIKIIFS----N--IEIISKLIDGKFLDYKYVISN-KYEKSFLVNRNKLLRSLQRIS 275 (314)
Q Consensus 204 l~~l~k~l~-~~~~~v~i~~~~~~~~~~~~----~--~~~~~~li~g~yP~~~~v~p~-~~~~~~~v~~~~l~~al~rv~ 275 (314)
+..++|... + ++.+++.-+++.+.|..+ + .+|..++++...+++. +|. +++..+.++..+|.++++.+.
T Consensus 75 l~kiLk~~~~~-~d~l~~~~~~~~l~i~~e~~~~~~~~~~~l~l~d~~~e~~~--~p~~e~~~~v~m~s~~f~~~~~dl~ 151 (249)
T 3fds_C 75 VKKILSKASSK-KATIELTETDSGLKIIIRDEKSGAKSTIYIKAEKGQVEQLT--EPKVNLAVNFTTDESVLNVIAADVT 151 (249)
T ss_dssp HHHHHTTCCCS-CEEEEEEECSSEEEEEEEETTTCCEEEEEEECEECCCCCCC--CCCCCCCEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHhhCCC-CCEEEEecCCCEEEEEEEeCCCCEEEEEEEECCCCccccCC--CCCCcceEEEEEEHHHHHHHHHHHH
Confidence 999999887 5 346777666787777663 2 5788999998876665 254 789999999999999999999
Q ss_pred hhhcCCCCeEEEEEECCEEEEEEecCCcceeEEEEe
Q psy13355 276 IISNDKLKGVRLVIKPNYLKITVSSSNREKASSTDL 311 (314)
Q Consensus 276 ~~~~~~~~~v~l~~~~~~l~l~~~~~d~G~a~e~~~ 311 (314)
.+++ .|.|..+++++.+++.. |.|+++..++
T Consensus 152 ~~sd----~v~i~~~~~~~~f~~~g-d~~~~~~~~~ 182 (249)
T 3fds_C 152 LVGE----EMRISTEEDKIKIEAGE-EGKRYVAFLM 182 (249)
T ss_dssp HHCS----EEEEEEETTEEEEEEEE-TTEEEEEEEE
T ss_pred HhCC----EEEEEEECCEEEEEEEe-cCcEEEEEEc
Confidence 9974 58999999999999865 8888876664
No 41
>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A
Probab=98.41 E-value=2.9e-05 Score=68.19 Aligned_cols=211 Identities=11% Similarity=0.117 Sum_probs=139.5
Q ss_pred CeEeEEee---hHHHHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEecCeEE--EEEEEEeee----e-c----c
Q psy13355 1 MQLVVNTE---KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQ--ITTYTAVGY----G-N----S 66 (314)
Q Consensus 1 Mk~~~~i~---~~~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~atd~~~~--~~~~~~~~~----~-~----~ 66 (314)
|+| .++ .+.|.++++.++++.+ .++|++.+++|.++|.|.... +...++.+. . . +
T Consensus 1 M~~--~i~~~~~~~~~k~i~als~l~~---------e~~~~~~~~gl~l~a~d~S~va~v~l~~~~~fF~~Y~~~~~~~~ 69 (266)
T 3a1j_A 1 MKC--LVTGGNVKVLGKAVHSLSRIGD---------ELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQYQAATPGQD 69 (266)
T ss_dssp CEE--EEETHHHHHHHHHHHHHHTTCS---------EEEEEEETTEEEEEEECTTSCEEEEEEECGGGSSEEECCCSSSC
T ss_pred CEe--EEcchhHHHHHHHHHHHHhhCC---------cEEEEEccCcEEEEEEcCcccEEEEEEEchHhhhheecCCCCCC
Confidence 899 884 6667777777777654 899999999999999997753 455555422 1 1 1
Q ss_pred ceEEEEechHHHHHHhcCCCC----CcEEEEEe--CCEEE--EEECC---eEEEEecCCCC-CCCCCcCCCCCceEEEEe
Q psy13355 67 SINIIVAARKFIDILRSLPET----EKVTIYIE--NKHMF--IKSGK---SKFTLQTLDAK-EYPIMTLNSKYDFEFTLS 134 (314)
Q Consensus 67 ~G~~~v~~k~l~~iik~l~~~----~~v~l~~~--~~~l~--I~~g~---~~~~l~~~~~~-~fP~~~~~~~~~~~~~v~ 134 (314)
...+.|+.+.+..++|....+ +.++|+.+ .+.+. +.|.+ .+|+++.++.+ +.|.+|...- ...+.++
T Consensus 70 ~~~~gv~~k~l~kilk~~~~~d~~vd~~~i~~~~~~~~l~~~~~~~~~~~k~~~l~l~d~~~~~~~~~~~~~-~~~i~~~ 148 (266)
T 3a1j_A 70 LLRCKILMKSFLSVFRSLAMLEKTVEKCCISLNGRSSRLVVQLHCKFGVRKTHNLSFQDCESLQAVFDPASC-PHMLRAP 148 (266)
T ss_dssp CCCEEEEHHHHHHHHCCHHHHHHHEEEEEEECCTTCSEEEEEEEEGGGCEEEEEEECEECCCCCCCCCGGGC-SEEEEEE
T ss_pred cEEEEEEhhHHHHHhCCcccccccceEEEEEEcCCCceEEEEEEccCCceEEEEEEEEccccccceechhhC-CceEEEC
Confidence 357999999999999988752 24888874 45554 44444 57999887754 3455555554 6899999
Q ss_pred HHHHHHHHhhhccccccccccceeeeEEEEEE-CCEEEEEE-----eccc-eEEEEEEecC--C----CCCCcceEEEeh
Q psy13355 135 QKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQ-KKNIIAVS-----SDGH-RLTYYQVNID--K----KFSSCSDIIIPR 201 (314)
Q Consensus 135 ~~~l~~~i~~v~~a~s~~~~~~~l~gv~l~~~-~~~l~~~a-----TDg~-Rl~~~~~~~~--~----~~~~~~~~iip~ 201 (314)
+..|.++++..... .++ |-|.++ ++.+.+.+ +|+. .....+...+ + ....+..+.+.-
T Consensus 149 s~~~~~~~~~~~~~--~d~-------v~i~~~~~~~v~~~s~~~~~~~~~~~~~~t~~~~~~~e~~~~~~~~~~~~tFsl 219 (266)
T 3a1j_A 149 ARVLGEAVLPFSPA--LAE-------VTLGIGRGRRVILRSYHEEEADSTAKAMVTEMCLGEEDFQQLQAQEGVAITFCL 219 (266)
T ss_dssp HHHHHHHHTTSCTT--CCE-------EEEEECGGGCEEEEEECCC-CCCSCCCCEEEEEECGGGCSEEECCTTCEEEEEH
T ss_pred hHHHHHHHHhCCCC--hhh-------EEEEeCCCCEEEEEEcccCccccccccceEEEEECHHHhhheecCCCCEEEEEH
Confidence 99999999886522 232 667777 66676666 1332 2222222222 1 011256899999
Q ss_pred hhHHHHHhhhcCCCCcEEEEEe--CcEEEEEEC
Q psy13355 202 KTVFTLQRLLENKENPVELKIS--NNQIKIIFS 232 (314)
Q Consensus 202 ~~l~~l~k~l~~~~~~v~i~~~--~~~~~~~~~ 232 (314)
+.++.++......+..|.++++ +.=+.|+++
T Consensus 220 kyl~~~l~f~~~~~~~v~i~~~~~g~Pl~~~~~ 252 (266)
T 3a1j_A 220 KEFRGLLSFAESANLNLSIHFDAPGRPAIFTIK 252 (266)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSTTSCEEEEEE
T ss_pred HHHHHHHHHHHhcCCcEEEEECCCCccEEEEEe
Confidence 9999955544322357999985 344666653
No 42
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C
Probab=98.39 E-value=0.00032 Score=61.32 Aligned_cols=199 Identities=10% Similarity=0.103 Sum_probs=137.8
Q ss_pred ehHHHHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEecCeE-EEEEEEEeee-----eccc-eEEEEechHHHHH
Q psy13355 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEV-QITTYTAVGY-----GNSS-INIIVAARKFIDI 80 (314)
Q Consensus 8 ~~~~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~atd~~~-~~~~~~~~~~-----~~~~-G~~~v~~k~l~~i 80 (314)
+.+.|.++++.+ ..++ .+.+++.++++.+++-|..+ .+...++.+. ..++ ..+.|+-..|.++
T Consensus 11 ~a~~l~~il~ai-~l~~---------ea~~~~s~~Gi~l~a~Ds~v~~v~l~l~~~~F~~Y~~~~~~~~~gi~l~~l~k~ 80 (263)
T 3a1j_C 11 NVRNLSTILKAI-HFRE---------HATCFATKNGIKVTVENAKCVQANAFIQAGIFQEFKVQEESVTFRINLTVLLDC 80 (263)
T ss_dssp CTHHHHHHHHTT-CSSS---------EEEEEEETTEEEEEEEETTTEEEEEEEEGGGSSEEEESSSCEEEEEEHHHHHHH
T ss_pred CHHHHHHHHhhe-ecCc---------EEEEEEcCCeEEEEEEeCCEEEEEEEECHHHCceEEEcCCCcEEEEEhHHHHHH
Confidence 677788888877 6543 68899999999999999554 5677777532 2345 7899999999999
Q ss_pred HhcCCCC----CcEEEE--Ee--CC--EEEEEECC--eEEEEecCCCCCCCCCcCCCC-CceEEEEeHHHHHHHHhhhcc
Q psy13355 81 LRSLPET----EKVTIY--IE--NK--HMFIKSGK--SKFTLQTLDAKEYPIMTLNSK-YDFEFTLSQKTLKCILNMVYF 147 (314)
Q Consensus 81 ik~l~~~----~~v~l~--~~--~~--~l~I~~g~--~~~~l~~~~~~~fP~~~~~~~-~~~~~~v~~~~l~~~i~~v~~ 147 (314)
++....+ +.++++ .. ++ .+.++.++ ..|++++++++.-|+++.... ....+.++++.|+++++-...
T Consensus 81 L~~~~~~~~~~d~~~l~i~~~~~~~~l~l~~e~~~~~~~~~l~~~~~~~~~d~~f~~~~~~~~v~m~s~~l~~~~~dl~~ 160 (263)
T 3a1j_C 81 LSIFGSSPMPGTLTALRMCYQGYGYPLMLFLEEGGVVTVCKINTQEPEETLDFDFCSTNVINKIILQSEGLREAFSELDM 160 (263)
T ss_dssp HTTTCSCCCTTCCCEEEEEECSTTCCEEEEEEETTEEEEEEECCBCCCCCCCCCCCTTTEEEEEEEEGGGGHHHHHTSCT
T ss_pred HHHhcCCcCCCCceEEEEEECCCCCcEEEEEEeCCeEEEEEEEEEcCCcccCcccCcccceEEEEEehHHHHHHHHHHhc
Confidence 9999765 335555 44 34 45565555 689999999887677765431 245899999999999998864
Q ss_pred ccccccccceeeeEEEEEECC--EEEEEEeccceEEEEEEecCCCC------CCcceEEEehhhHHHHHhhhcCCCCcEE
Q psy13355 148 SIAQQDIRYYLNGLLLSFQKK--NIIAVSSDGHRLTYYQVNIDKKF------SSCSDIIIPRKTVFTLQRLLENKENPVE 219 (314)
Q Consensus 148 a~s~~~~~~~l~gv~l~~~~~--~l~~~aTDg~Rl~~~~~~~~~~~------~~~~~~iip~~~l~~l~k~l~~~~~~v~ 219 (314)
++ +. |.+..+++ .+++.|.--.--+...++..... .++......-+++..+.|.++- ...|.
T Consensus 161 -~~-d~-------v~i~~~~~~p~~~~~~~Gd~g~~~i~~~~~~~~~~~~~~~~~~~~~y~l~yL~~~~ka~~~-s~~v~ 230 (263)
T 3a1j_C 161 -TS-EV-------LQITMSPDKPYFRLSTFGNAGSSHLDYPKDSDLMEAFHCNQTQVNRYKISLLKPSTKALVL-SCKVS 230 (263)
T ss_dssp -TS-SE-------EEEEECSSSSSEEEEEEETTEEEEEEECTTCSSEEEEEECSCEEEEEEHHHHTTHHHHHHH-CSEEE
T ss_pred -cC-Ce-------EEEEEEcCCCEEEEEEEcCCccEEEEEcCCCCeEEEEEeCChhhcEEeHHHHHHHHhhhhh-cCEEE
Confidence 33 22 66666666 66666542121223333322110 1245778888899999888764 57899
Q ss_pred EEEeCcE
Q psy13355 220 LKISNNQ 226 (314)
Q Consensus 220 i~~~~~~ 226 (314)
|.++.+.
T Consensus 231 i~~~~~~ 237 (263)
T 3a1j_C 231 IRTDNRG 237 (263)
T ss_dssp EEEETTC
T ss_pred EEECCCe
Confidence 9999763
No 43
>1b77_A GP45, protein (sliding clamp); replisome; 2.10A {Enterobacteria phage RB69} SCOP: d.131.1.2 d.131.1.2 PDB: 1b8h_A* 1czd_A* 3u5z_G* 3u60_G* 3u61_G*
Probab=97.87 E-value=0.004 Score=52.30 Aligned_cols=188 Identities=11% Similarity=0.177 Sum_probs=120.6
Q ss_pred ccEEEEEECCEEEEE-EecCeEEEEEEEEeeeeccceEEEEechHHHHHHhcCCCCCcEEEEEeCCEEEEEECCeEEEEe
Q psy13355 33 SNILVCKNSEKISFL-STDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQ 111 (314)
Q Consensus 33 ~~i~i~~~~~~l~l~-atd~~~~~~~~~~~~~~~~~G~~~v~~k~l~~iik~l~~~~~v~l~~~~~~l~I~~g~~~~~l~ 111 (314)
.+|.|. .|+...+ +-++.+.+.+.++.+.. .--.+.+-..|+.+++.++++.+|++.-+ +.+.|+.|+++.+.+
T Consensus 19 ~SI~lk--pG~~i~T~s~~~~i~AeA~I~d~fd--~e~~IYDL~~FL~iL~L~~~~aei~~~~~-~~I~I~~~rs~~~~~ 93 (228)
T 1b77_A 19 SGILLS--QGKFIMTRAVNGTTYAEANISDEID--FDVALYDLNSFLSILSLVSDDAEISMHTD-GNIKIADTRSTVYWP 93 (228)
T ss_dssp SCEEEC--SEEEEEEECTTSSEEEEEEEEEEEC--SCEEESCHHHHHHHHTTSCTTCEEEECTT-SSEEEECSSEEEEEC
T ss_pred CceEEc--CCCEEEEEeCCCcEEEEEEecccCc--ceeeeeeHHHHHHHHhccCCCCeEEecCC-ceEEEeCCCeEEEEE
Confidence 355555 4444444 44566788888876664 22334577899999998885543444322 389999999999999
Q ss_pred cCCCCC--CCCCcCC-CCCceEEEEeHHHHHHHHhhhccccccccccceeeeEEEEEECCEEEEEE----eccc----eE
Q psy13355 112 TLDAKE--YPIMTLN-SKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVS----SDGH----RL 180 (314)
Q Consensus 112 ~~~~~~--fP~~~~~-~~~~~~~~v~~~~l~~~i~~v~~a~s~~~~~~~l~gv~l~~~~~~l~~~a----TDg~----Rl 180 (314)
.-+++- +|+-+.. |.....|.+.+++|.++.+... ..+ +.-+.|..++|.+.+.+ .|+. ..
T Consensus 94 ~adp~~I~~P~k~i~~P~~dv~F~L~~edl~ql~kas~-~l~-------l~dl~~~~~~g~i~i~~~~~~~d~s~~~n~y 165 (228)
T 1b77_A 94 AADKSTIVFPNKPIQFPVASVITEIKAEDLQQLLRVSR-GLQ-------IDTIAITNKDGKIVINGYNKVEDSGLTRPKY 165 (228)
T ss_dssp CBCGGGSCCCSSCCCCCCCSEEEEECHHHHHHHHHHHH-HTT-------CCEEEEEEETTEEEEEEECTTTCTTCCSCSE
T ss_pred ccCcccccCCccccCCCCCCEEEEECHHHHHHHHHHHH-hcC-------CCeEEEEecCCEEEEEEeeccCCCCccCCce
Confidence 888763 3543221 2237899999999999887654 333 23488888999999986 3333 23
Q ss_pred EEEEEecCCCCCCcceEEEehhhHHHHHhhhcCCCCcEEEEEeCcE--EEEEECCEEEEEEe
Q psy13355 181 TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQ--IKIIFSNIEIISKL 240 (314)
Q Consensus 181 ~~~~~~~~~~~~~~~~~iip~~~l~~l~k~l~~~~~~v~i~~~~~~--~~~~~~~~~~~~~l 240 (314)
+..-.+.++. .++.+.+..+.+ |++++ +-.|.|+....+ ..|+..+..+...+
T Consensus 166 sv~vge~~~~--~~F~f~i~i~Nl----k~i~~-dY~V~i~~~s~~~aa~F~~~~~~Y~Ial 220 (228)
T 1b77_A 166 SLTLTDYDGS--NNFNFVINMANM----KIQPG-NYKVMLWGAGDKVAAKFESSQVSYVIAM 220 (228)
T ss_dssp EEEEEECCCS--CCEEEEEEGGGC----CCCSS-CEEEEEEEETTEEEEEEECSSCEEEEEC
T ss_pred EEEeecccCC--CceEEEEEhhhe----EecCC-ceEEEEEecChhhheeecCCCeeEEEEE
Confidence 3333344332 379999988886 46664 455666444433 46666666555443
No 44
>3g65_A Cell cycle checkpoint control protein RAD9A; PCNA, DNA binding clamp, DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein; 2.90A {Homo sapiens}
Probab=97.66 E-value=0.0073 Score=53.57 Aligned_cols=212 Identities=11% Similarity=0.131 Sum_probs=133.8
Q ss_pred CeEeEEeehHH---HHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEecCeEEE--EEEEEeee----e-cc----
Q psy13355 1 MQLVVNTEKNA---ILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQI--TTYTAVGY----G-NS---- 66 (314)
Q Consensus 1 Mk~~~~i~~~~---l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~atd~~~~~--~~~~~~~~----~-~~---- 66 (314)
||+ .++... |.++|+.++++. ..++|++..++|.++|.|...++ ...++... . ..
T Consensus 1 M~~--~i~g~~~K~f~kai~~Lskig---------dEl~~e~~~dgL~LravNsSrSA~~~~~f~~~FF~~Y~~~~~~~~ 69 (296)
T 3g65_A 1 MKC--LVTGGNVKVLGKAVHSLSRIG---------DELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQYQAATPGQD 69 (296)
T ss_dssp CEE--EEETHHHHHHHHHHHHHHTTC---------SEEEEEEETTEEEEEEECTTSCEEEEEEETTSSCCCCCC------
T ss_pred CEE--EEecccHHHHHHHHHHHHhhC---------ceEEEEEcCCeEEEEEECCcceEEEEEEeChHHhhheecCCCCCc
Confidence 888 776554 557777777754 48999999999999999977644 44444321 1 11
Q ss_pred ceEEEEechHHHHHHhcCCCC----CcEEEEEe--CCEEEEEE--C---CeEEEEecCCCCCCC-CCcCCCCCceEEEEe
Q psy13355 67 SINIIVAARKFIDILRSLPET----EKVTIYIE--NKHMFIKS--G---KSKFTLQTLDAKEYP-IMTLNSKYDFEFTLS 134 (314)
Q Consensus 67 ~G~~~v~~k~l~~iik~l~~~----~~v~l~~~--~~~l~I~~--g---~~~~~l~~~~~~~fP-~~~~~~~~~~~~~v~ 134 (314)
.-.+.|..|.++.++|.+... +.+.|+++ .+++.|+. . .-+|+++..+.+.-. .++... ....+.++
T Consensus 70 ~~~c~i~~K~ll~vfr~~~~~d~~ve~c~i~l~~~~~rl~i~l~ck~gi~Kt~~l~~~~~~~l~a~~~~~~-~~n~~~i~ 148 (296)
T 3g65_A 70 LLRCKILMKSFLSVFRSLAMLEKTVEKCCISLNGRSSRLVVQLHCKFGVRKTHNLSFQDCESLQAVFDPAS-CPHMLRAP 148 (296)
T ss_dssp -CCEEEEHHHHHTTTSSTTC----CCEEEEEECCC---EEEEEECGGGCEEEEEECCCCCCCCCCCCCGGG-CSCEEEEE
T ss_pred cEEEEEEhHHHHHHhccccccccceeEEEEEEeCCCCEEEEEEEeCCCeEEEEEEEeEeccccccccCchh-CcEEEEEc
Confidence 224899999999999998643 12566654 45555543 3 347998877644322 222222 25789999
Q ss_pred HHHHHHHHhhhccccccccccceeeeEEEEEE-CCEEEEEEe-c----cc-eEEEEEEecCC------CCCCcceEEEeh
Q psy13355 135 QKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQ-KKNIIAVSS-D----GH-RLTYYQVNIDK------KFSSCSDIIIPR 201 (314)
Q Consensus 135 ~~~l~~~i~~v~~a~s~~~~~~~l~gv~l~~~-~~~l~~~aT-D----g~-Rl~~~~~~~~~------~~~~~~~~iip~ 201 (314)
+..|.+++..... +.++ |-|.+. ++.+.+.+- | +- +-...++.+.. ....+..+.+.-
T Consensus 149 ~~~l~e~l~~f~~--~~ee-------vtl~~~~~~~v~~~s~~e~~~d~~~~~~~Tel~i~~~ef~~~~v~~~~~itf~l 219 (296)
T 3g65_A 149 ARVLGEAVLPFSP--ALAE-------VTLGIGRGRRVILRSYHEEEADSTAKAMVTEMCLGEEDFQQLQAQEGVAITFCL 219 (296)
T ss_dssp HHHHHHHSTTSCT--TCCE-------EEEEEETTTEEEEEECCC-----CCCCCEEEEEECGGGCSEEECCTTCEEEEEH
T ss_pred hHHHHHHHHhCcC--Ccce-------EEEEECCCCeEEEEEeccccccccCceEEEEEEEChhHheeEecCCCcEEEEEH
Confidence 9999999997653 2333 667776 577777662 2 11 22333333321 012367899999
Q ss_pred hhHHHHHhhhcCCCCcEEEEEe--CcEEEEEECC
Q psy13355 202 KTVFTLQRLLENKENPVELKIS--NNQIKIIFSN 233 (314)
Q Consensus 202 ~~l~~l~k~l~~~~~~v~i~~~--~~~~~~~~~~ 233 (314)
|.++.++........+|.++++ ++=+.|+.++
T Consensus 220 Kefrail~~ae~~~~~i~i~f~~pG~Pl~~~~~~ 253 (296)
T 3g65_A 220 KEFRGLLSFAESANLNLSIHFDAPGRPAIFTIKD 253 (296)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCSTTSCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCeEEEEECCCCCcEEEEEeC
Confidence 9999999876544578999988 3446665543
No 45
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C
Probab=97.58 E-value=0.0047 Score=53.85 Aligned_cols=160 Identities=9% Similarity=0.120 Sum_probs=114.2
Q ss_pred eHHHHHHHHhhhccccccccccceeeeEEEEEECCEEEEEEeccceEEEEEEecCCC------CCCc-ceEEEehhhHHH
Q psy13355 134 SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKK------FSSC-SDIIIPRKTVFT 206 (314)
Q Consensus 134 ~~~~l~~~i~~v~~a~s~~~~~~~l~gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~~------~~~~-~~~iip~~~l~~ 206 (314)
++..|+++++.+ .- .+ -+.|+++++++++.|-|+| .+...+.++.. .+.+ ..+-|+-+.+.+
T Consensus 11 ~a~~l~~il~ai-~l-~~--------ea~~~~s~~Gi~l~a~Ds~-v~~v~l~l~~~~F~~Y~~~~~~~~~gi~l~~l~k 79 (263)
T 3a1j_C 11 NVRNLSTILKAI-HF-RE--------HATCFATKNGIKVTVENAK-CVQANAFIQAGIFQEFKVQEESVTFRINLTVLLD 79 (263)
T ss_dssp CTHHHHHHHHTT-CS-SS--------EEEEEEETTEEEEEEEETT-TEEEEEEEEGGGSSEEEESSSCEEEEEEHHHHHH
T ss_pred CHHHHHHHHhhe-ec-Cc--------EEEEEEcCCeEEEEEEeCC-EEEEEEEECHHHCceEEEcCCCcEEEEEhHHHHH
Confidence 778888888887 22 22 2799999999999999955 56665555421 1124 789999999999
Q ss_pred HHhhhcCCC---C--cEEEEEeC--c--EEEEEECC--EEEEEEeccccC-CCccccccc-CcceEEEEehHHHHHHHhH
Q psy13355 207 LQRLLENKE---N--PVELKISN--N--QIKIIFSN--IEIISKLIDGKF-LDYKYVISN-KYEKSFLVNRNKLLRSLQR 273 (314)
Q Consensus 207 l~k~l~~~~---~--~v~i~~~~--~--~~~~~~~~--~~~~~~li~g~y-P~~~~v~p~-~~~~~~~v~~~~l~~al~r 273 (314)
++|.....+ + .++|.+.+ + .+.|+.++ .++..++++-+- |+++ ++. .....+.++...|.++++-
T Consensus 80 ~L~~~~~~~~~~d~~~l~i~~~~~~~~l~l~~e~~~~~~~~~l~~~~~~~~~d~~--f~~~~~~~~v~m~s~~l~~~~~d 157 (263)
T 3a1j_C 80 CLSIFGSSPMPGTLTALRMCYQGYGYPLMLFLEEGGVVTVCKINTQEPEETLDFD--FCSTNVINKIILQSEGLREAFSE 157 (263)
T ss_dssp HHTTTCSCCCTTCCCEEEEEECSTTCCEEEEEEETTEEEEEEECCBCCCCCCCCC--CCTTTEEEEEEEEGGGGHHHHHT
T ss_pred HHHHhcCCcCCCCceEEEEEECCCCCcEEEEEEeCCeEEEEEEEEEcCCcccCcc--cCcccceEEEEEehHHHHHHHHH
Confidence 999987530 3 55555554 3 46666666 456677777553 4432 222 2334999999999999999
Q ss_pred HhhhhcCCCCeEEEEEECC--EEEEEEecCCcceeEEEEe
Q psy13355 274 ISIISNDKLKGVRLVIKPN--YLKITVSSSNREKASSTDL 311 (314)
Q Consensus 274 v~~~~~~~~~~v~l~~~~~--~l~l~~~~~d~G~a~e~~~ 311 (314)
+..+++ .|.|...++ .+++++.+ |.|+++-.++
T Consensus 158 l~~~~d----~v~i~~~~~~p~~~~~~~G-d~g~~~i~~~ 192 (263)
T 3a1j_C 158 LDMTSE----VLQITMSPDKPYFRLSTFG-NAGSSHLDYP 192 (263)
T ss_dssp SCTTSS----EEEEEECSSSSSEEEEEEE-TTEEEEEEEC
T ss_pred HhccCC----eEEEEEEcCCCEEEEEEEc-CCccEEEEEc
Confidence 887652 588999988 99999984 9999877665
No 46
>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A
Probab=96.87 E-value=0.033 Score=48.43 Aligned_cols=135 Identities=13% Similarity=0.039 Sum_probs=100.3
Q ss_pred eEEEEEECCEEEEEEeccceEEEEEEecCCC------CC----CcceEEEehhhHHHHHhhhcCCC---CcEEEEEe--C
Q psy13355 160 GLLLSFQKKNIIAVSSDGHRLTYYQVNIDKK------FS----SCSDIIIPRKTVFTLQRLLENKE---NPVELKIS--N 224 (314)
Q Consensus 160 gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~~------~~----~~~~~iip~~~l~~l~k~l~~~~---~~v~i~~~--~ 224 (314)
-++|+..+++|.+.|.|.-|.+...+.+... .+ .+..+-|..+.+..+.|.....+ +.++|.++ +
T Consensus 26 e~~~~~~~~gl~l~a~d~S~va~v~l~~~~~fF~~Y~~~~~~~~~~~~gv~~k~l~kilk~~~~~d~~vd~~~i~~~~~~ 105 (266)
T 3a1j_A 26 ELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQYQAATPGQDLLRCKILMKSFLSVFRSLAMLEKTVEKCCISLNGRS 105 (266)
T ss_dssp EEEEEEETTEEEEEEECTTSCEEEEEEECGGGSSEEECCCSSSCCCCEEEEHHHHHHHHCCHHHHHHHEEEEEEECCTTC
T ss_pred cEEEEEccCcEEEEEEcCcccEEEEEEEchHhhhheecCCCCCCcEEEEEEhhHHHHHhCCcccccccceEEEEEEcCCC
Confidence 3999999999999999999999988777631 11 13678899999888887665311 47888874 4
Q ss_pred cEEEEEE--CC---EEEEEEeccccCCCccccccc-CcceEEEEehHHHHHHHhHHhhhhcCCCCeEEEEEE-CCEEEEE
Q psy13355 225 NQIKIIF--SN---IEIISKLIDGKFLDYKYVISN-KYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIK-PNYLKIT 297 (314)
Q Consensus 225 ~~~~~~~--~~---~~~~~~li~g~yP~~~~v~p~-~~~~~~~v~~~~l~~al~rv~~~~~~~~~~v~l~~~-~~~l~l~ 297 (314)
+.+.|.. .+ -+|..++++..-. +..+|+ ++++.+.++...|.++++-....++ .|.|... ++++.++
T Consensus 106 ~~l~~~~~~~~~~~k~~~l~l~d~~~~--~~~~~~~~~~~~i~~~s~~~~~~~~~~~~~~d----~v~i~~~~~~~v~~~ 179 (266)
T 3a1j_A 106 SRLVVQLHCKFGVRKTHNLSFQDCESL--QAVFDPASCPHMLRAPARVLGEAVLPFSPALA----EVTLGIGRGRRVILR 179 (266)
T ss_dssp SEEEEEEEEGGGCEEEEEEECEECCCC--CCCCCGGGCSEEEEEEHHHHHHHHTTSCTTCC----EEEEEECGGGCEEEE
T ss_pred ceEEEEEEccCCceEEEEEEEEccccc--cceechhhCCceEEEChHHHHHHHHhCCCChh----hEEEEeCCCCEEEEE
Confidence 5555544 33 4677888776543 234555 5789999999999999988776653 5999999 9999999
Q ss_pred Eec
Q psy13355 298 VSS 300 (314)
Q Consensus 298 ~~~ 300 (314)
+..
T Consensus 180 s~~ 182 (266)
T 3a1j_A 180 SYH 182 (266)
T ss_dssp EEC
T ss_pred Ecc
Confidence 854
No 47
>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_C 3ggr_B
Probab=96.60 E-value=0.33 Score=42.46 Aligned_cols=207 Identities=11% Similarity=0.162 Sum_probs=124.2
Q ss_pred CeEeEEeehH----HHHHHHHHhhccccCCCCccccccEEEEEECCEEEEEEecC----eEEEEEEEEee-----e-ec-
Q psy13355 1 MQLVVNTEKN----AILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDT----EVQITTYTAVG-----Y-GN- 65 (314)
Q Consensus 1 Mk~~~~i~~~----~l~~al~~v~~~~~~~~~~pil~~i~i~~~~~~l~l~atd~----~~~~~~~~~~~-----~-~~- 65 (314)
|||..++... .|.+.++.+.+... ...++...+++.+.++|. .+.+.+.++.+ . .+
T Consensus 2 MkF~a~l~~~~~~~~lkki~~ai~~L~k---------~~~l~~t~~~l~~~~~d~~~~~~v~l~~~~~~~~~F~~Y~~~s 72 (281)
T 3a1j_B 2 MKFRAKIVDGACLNHFTRISNMIAKLAK---------TCTLRISPDKLNFILCDKLANGGVSMWCELEQENFFNEFQMEG 72 (281)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHHHHHCS---------EEEEEECSSEEEEEECCCC--CCCEEEEEEEGGGTCSEEEEEC
T ss_pred ceEEEEecCcchHHHHHHHHHHHHHHhC---------EEEEEEcCCEEEEEECCCCCCCeEEEEEEeehhcCCCCeEEee
Confidence 8996666544 46666666666553 677888899999999884 56677777641 1 11
Q ss_pred -----cceEEEEechHHHHHHhcCCCCCcEEEEEe-CC--EEEEEEC------C---e--EEEEecCCCCCCCCC--cCC
Q psy13355 66 -----SSINIIVAARKFIDILRSLPETEKVTIYIE-NK--HMFIKSG------K---S--KFTLQTLDAKEYPIM--TLN 124 (314)
Q Consensus 66 -----~~G~~~v~~k~l~~iik~l~~~~~v~l~~~-~~--~l~I~~g------~---~--~~~l~~~~~~~fP~~--~~~ 124 (314)
.+-.+.++...|..++|...+...++|... ++ .|.+... + . .+.++.++..+...+ |..
T Consensus 73 ~~~~~n~I~l~v~~~~L~k~Lk~a~n~~~~~ikL~k~~~p~L~fe~~~~~~~~~~~~v~~dipvkll~~~~~e~l~~P~~ 152 (281)
T 3a1j_B 73 VSAENNEIYLELTSENLSRALKTAQNARALKIKLTNKHFPCLTVSVELLSMSSSSRIVTHDIPIKVIPRKLWKDLQEPVV 152 (281)
T ss_dssp SSSTTCCEEEEEEHHHHHHHGGGGGGEEEEEEEEECSSSCEEEEEEEECCSSSCCCEEEEEEECEECCGGGGGGGSCCCC
T ss_pred ccCCCCEEEEEEeHHHHHHHHHhcCCCCeEEEEeccCCCCEEEEEEEcccCCCCceEEEEEeeeEEcCHHHHhhcCCCCC
Confidence 244577899999999999866555888854 32 3444432 1 1 365566765333332 333
Q ss_pred CCCceEEEEeH-HHHHHHHhhhccccccccccceeeeEEEEEEC-CEEEEE-EeccceEEEEEEecCC------------
Q psy13355 125 SKYDFEFTLSQ-KTLKCILNMVYFSIAQQDIRYYLNGLLLSFQK-KNIIAV-SSDGHRLTYYQVNIDK------------ 189 (314)
Q Consensus 125 ~~~~~~~~v~~-~~l~~~i~~v~~a~s~~~~~~~l~gv~l~~~~-~~l~~~-aTDg~Rl~~~~~~~~~------------ 189 (314)
++....+.+|+ ..|++++++-.. ++. -|.++... |.+++. .+|.-.....--.+..
T Consensus 153 ~~~dv~i~lPsl~~~~~iv~~lk~-i~d--------~v~i~a~~~G~l~f~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~ 223 (281)
T 3a1j_B 153 PDPDVSIYLPVLKTMKSVVEKMKN-ISN--------HLVIEANLDGELNLKIETELVCVTTHFKDLGNPPLASESTHEDR 223 (281)
T ss_dssp CCCSEEEECCCHHHHHHHHHHHHT-TCS--------EEEEEECTTSCEEEEEECSSEEEEEEECCCCCCCC---------
T ss_pred CCCCeEEECCCHHHHHHHHHHHhc-cCC--------eEEEEEECCCeEEEEEEeeeEEEEEEEcCCCCCCCCcccccccc
Confidence 22267899999 699999998763 331 14444432 224443 3443322221111110
Q ss_pred CCCCcceEEEehhhHHHHHhhhcCCCCcEEEE-EeCcE
Q psy13355 190 KFSSCSDIIIPRKTVFTLQRLLENKENPVELK-ISNNQ 226 (314)
Q Consensus 190 ~~~~~~~~iip~~~l~~l~k~l~~~~~~v~i~-~~~~~ 226 (314)
...+...+.+..|.+..+.|.-+= ...+.+. +.+++
T Consensus 224 ~~~~~~sv~~~~k~l~~f~k~~~l-s~~v~~~~i~~~~ 260 (281)
T 3a1j_B 224 NVEHMAEVHIDIRKLLQFLAGQQV-NPTKALCNIVNNK 260 (281)
T ss_dssp -CCCCEEEEEEHHHHHHHHHHCCS-CCSEEEEEEETTT
T ss_pred CCCccEEEEEEHHHHHHhhCcccC-CCcEEEEEEeCCc
Confidence 011357899999999999887542 3567776 76543
No 48
>3g65_A Cell cycle checkpoint control protein RAD9A; PCNA, DNA binding clamp, DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein; 2.90A {Homo sapiens}
Probab=94.25 E-value=2.6 Score=36.97 Aligned_cols=202 Identities=7% Similarity=-0.012 Sum_probs=119.4
Q ss_pred HHhcCCCCCcEEEEEeCCEEEEEEC---CeEEEEecCCCCCCCCCcCCCC--CceEEEEeHHHHHHHHhhhccccccccc
Q psy13355 80 ILRSLPETEKVTIYIENKHMFIKSG---KSKFTLQTLDAKEYPIMTLNSK--YDFEFTLSQKTLKCILNMVYFSIAQQDI 154 (314)
Q Consensus 80 iik~l~~~~~v~l~~~~~~l~I~~g---~~~~~l~~~~~~~fP~~~~~~~--~~~~~~v~~~~l~~~i~~v~~a~s~~~~ 154 (314)
-+.++.+ ++.|+...+.|.+++= ++.|---.+++.-|-.+....+ ....+.|..+.|..++++... .+.+
T Consensus 19 ~Lskigd--El~~e~~~dgL~LravNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~~c~i~~K~ll~vfr~~~~---~d~~ 93 (296)
T 3g65_A 19 SLSRIGD--ELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQYQAATPGQDLLRCKILMKSFLSVFRSLAM---LEKT 93 (296)
T ss_dssp HHHTTCS--EEEEEEETTEEEEEEECTTSCEEEEEEETTSSCCCCCC-------CCEEEEHHHHHTTTSSTTC-------
T ss_pred HHHhhCc--eEEEEEcCCeEEEEEECCcceEEEEEEeChHHhhheecCCCCCccEEEEEEhHHHHHHhccccc---cccc
Confidence 3445544 4999999888888863 3333333344555555544321 156799999999888887642 1100
Q ss_pred cceeeeEEEEEECCEEEEEE--eccceEEEEEEecCCCC------C---CcceEEEehhhHHHHHhhhcCCCCcEEEEEe
Q psy13355 155 RYYLNGLLLSFQKKNIIAVS--SDGHRLTYYQVNIDKKF------S---SCSDIIIPRKTVFTLQRLLENKENPVELKIS 223 (314)
Q Consensus 155 ~~~l~gv~l~~~~~~l~~~a--TDg~Rl~~~~~~~~~~~------~---~~~~~iip~~~l~~l~k~l~~~~~~v~i~~~ 223 (314)
---+-|.++.+.++|.+.- .+|. .-.+.+++.+.. + -.-.+.++.+.+.+++..++...++|+|.++
T Consensus 94 -ve~c~i~l~~~~~rl~i~l~ck~gi-~Kt~~l~~~~~~~l~a~~~~~~~~n~~~i~~~~l~e~l~~f~~~~eevtl~~~ 171 (296)
T 3g65_A 94 -VEKCCISLNGRSSRLVVQLHCKFGV-RKTHNLSFQDCESLQAVFDPASCPHMLRAPARVLGEAVLPFSPALAEVTLGIG 171 (296)
T ss_dssp -CCEEEEEECCC---EEEEEECGGGC-EEEEEECCCCCCCCCCCCCGGGCSCEEEEEHHHHHHHSTTSCTTCCEEEEEEE
T ss_pred -eeEEEEEEeCCCCEEEEEEEeCCCe-EEEEEEEeEeccccccccCchhCcEEEEEchHHHHHHHHhCcCCcceEEEEEC
Confidence 0011233333344444443 3442 133334444211 1 1467899999999999999865789999998
Q ss_pred -CcEEEEEEC----------CEEEEEEeccccCCCcccccccCcceEEEEehHHHHHHHhHHhhhhc-------CCCCeE
Q psy13355 224 -NNQIKIIFS----------NIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISN-------DKLKGV 285 (314)
Q Consensus 224 -~~~~~~~~~----------~~~~~~~li~g~yP~~~~v~p~~~~~~~~v~~~~l~~al~rv~~~~~-------~~~~~v 285 (314)
++.+.|+.- ...-...+-.+.|-+|+- ..+..+++.-++|++.+..+..+.. ...+++
T Consensus 172 ~~~~v~~~s~~e~~~d~~~~~~~Tel~i~~~ef~~~~v----~~~~~itf~lKefrail~~ae~~~~~i~i~f~~pG~Pl 247 (296)
T 3g65_A 172 RGRRVILRSYHEEEADSTAKAMVTEMCLGEEDFQQLQA----QEGVAITFCLKEFRGLLSFAESANLNLSIHFDAPGRPA 247 (296)
T ss_dssp TTTEEEEEECCC-----CCCCCEEEEEECGGGCSEEEC----CTTCEEEEEHHHHHHHHHHHHHTTCEEEEECCSTTSCE
T ss_pred CCCeEEEEEeccccccccCceEEEEEEEChhHheeEec----CCCcEEEEEHHHHHHHHHHHHhcCCeEEEEECCCCCcE
Confidence 789988873 112223333456666632 3457899999999999999877542 123667
Q ss_pred EEEEECC
Q psy13355 286 RLVIKPN 292 (314)
Q Consensus 286 ~l~~~~~ 292 (314)
.|.++++
T Consensus 248 ~~~~~~~ 254 (296)
T 3g65_A 248 IFTIKDS 254 (296)
T ss_dssp EEEEECS
T ss_pred EEEEeCC
Confidence 7777755
No 49
>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_C 3ggr_B
Probab=92.39 E-value=4.6 Score=35.06 Aligned_cols=142 Identities=12% Similarity=0.185 Sum_probs=91.8
Q ss_pred eEEEEEECCEEEEEEec----cceEEEEEEecCCCC-----------CCcceEEEehhhHHHHHhhhcCCCCcEEEEEeC
Q psy13355 160 GLLLSFQKKNIIAVSSD----GHRLTYYQVNIDKKF-----------SSCSDIIIPRKTVFTLQRLLENKENPVELKISN 224 (314)
Q Consensus 160 gv~l~~~~~~l~~~aTD----g~Rl~~~~~~~~~~~-----------~~~~~~iip~~~l~~l~k~l~~~~~~v~i~~~~ 224 (314)
-..|.++++++.+.+.| +|-..+..++....- ..+..+-++...|..++|-..+ +..++|...+
T Consensus 30 ~~~l~~t~~~l~~~~~d~~~~~~v~l~~~~~~~~~F~~Y~~~s~~~~~n~I~l~v~~~~L~k~Lk~a~n-~~~~~ikL~k 108 (281)
T 3a1j_B 30 TCTLRISPDKLNFILCDKLANGGVSMWCELEQENFFNEFQMEGVSAENNEIYLELTSENLSRALKTAQN-ARALKIKLTN 108 (281)
T ss_dssp EEEEEECSSEEEEEECCCC--CCCEEEEEEEGGGTCSEEEEECSSSTTCCEEEEEEHHHHHHHGGGGGG-EEEEEEEEEC
T ss_pred EEEEEEcCCEEEEEECCCCCCCeEEEEEEeehhcCCCCeEEeeccCCCCEEEEEEeHHHHHHHHHhcCC-CCeEEEEecc
Confidence 37888889999999988 466566666653210 1245677777777766665543 4678887654
Q ss_pred c---EEEEEEC------C---E--EEEEEeccccCCCccccc-cc--CcceEEEEeh-HHHHHHHhHHhhhhcCCCCeEE
Q psy13355 225 N---QIKIIFS------N---I--EIISKLIDGKFLDYKYVI-SN--KYEKSFLVNR-NKLLRSLQRISIISNDKLKGVR 286 (314)
Q Consensus 225 ~---~~~~~~~------~---~--~~~~~li~g~yP~~~~v~-p~--~~~~~~~v~~-~~l~~al~rv~~~~~~~~~~v~ 286 (314)
+ .+.|+.. . . .|-.++++-. +|+.+- |. +++..+.++. .+|...++|..-+++ .+.
T Consensus 109 ~~~p~L~fe~~~~~~~~~~~~v~~dipvkll~~~--~~e~l~~P~~~~~dv~i~lPsl~~~~~iv~~lk~i~d----~v~ 182 (281)
T 3a1j_B 109 KHFPCLTVSVELLSMSSSSRIVTHDIPIKVIPRK--LWKDLQEPVVPDPDVSIYLPVLKTMKSVVEKMKNISN----HLV 182 (281)
T ss_dssp SSSCEEEEEEEECCSSSCCCEEEEEEECEECCGG--GGGGGSCCCCCCCSEEEECCCHHHHHHHHHHHHTTCS----EEE
T ss_pred CCCCEEEEEEEcccCCCCceEEEEEeeeEEcCHH--HHhhcCCCCCCCCCeEEECCCHHHHHHHHHHHhccCC----eEE
Confidence 4 3555544 1 1 2344666643 445543 43 4678899999 799999999998863 466
Q ss_pred EEEECC-EEEEEEecCCcceeEEE
Q psy13355 287 LVIKPN-YLKITVSSSNREKASST 309 (314)
Q Consensus 287 l~~~~~-~l~l~~~~~d~G~a~e~ 309 (314)
+....+ .|+++... |.|+..-.
T Consensus 183 i~a~~~G~l~f~~~~-d~~~~~~~ 205 (281)
T 3a1j_B 183 IEANLDGELNLKIET-ELVCVTTH 205 (281)
T ss_dssp EEECTTSCEEEEEEC-SSEEEEEE
T ss_pred EEEECCCeEEEEEEe-eeEEEEEE
Confidence 766644 47777764 66665543
No 50
>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis}
Probab=76.93 E-value=2.8 Score=30.87 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=39.0
Q ss_pred hHHHHHhhhcCCCCcEEEEEe-CcEEEEEECCEEEEEEeccccCCCccccc
Q psy13355 203 TVFTLQRLLENKENPVELKIS-NNQIKIIFSNIEIISKLIDGKFLDYKYVI 252 (314)
Q Consensus 203 ~l~~l~k~l~~~~~~v~i~~~-~~~~~~~~~~~~~~~~li~g~yP~~~~v~ 252 (314)
..++|+..+++..++|++.-. ++.+.+..++..+.+|..+|.||+.+.+.
T Consensus 28 laqeLl~tF~~~l~eV~L~P~~~G~FeV~vng~lVwsRk~~ggFPe~keLk 78 (108)
T 2ojl_A 28 MAQELLSTFGADLGEVALVPGTGGVFRIHYNGAPLWDREVDGGFPEAKVLK 78 (108)
T ss_dssp HHHHHHHHHGGGSSEEEEEEECTTCEEEEETTEEEEEHHHHCSCCCHHHHH
T ss_pred HHHHHHHhcCcccceEEEEeCCCceEEEEECCEEEEEEccCCCCCCHHHHH
Confidence 346777777653467777654 56788899999999999999999987654
No 51
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=70.43 E-value=6.3 Score=28.76 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=37.9
Q ss_pred hHHHHHhhhcCCCCcEEEEEe-CcEEEEEECCEEEEEEeccccCCCccccc
Q psy13355 203 TVFTLQRLLENKENPVELKIS-NNQIKIIFSNIEIISKLIDGKFLDYKYVI 252 (314)
Q Consensus 203 ~l~~l~k~l~~~~~~v~i~~~-~~~~~~~~~~~~~~~~li~g~yP~~~~v~ 252 (314)
..++|...+++.-.+|++.-. ++.+.+..++..+.+|+.+|.||+.+.+.
T Consensus 25 laqeLl~tF~~~l~~v~l~P~~~G~FEV~vng~lV~SKk~~ggFPe~~eLk 75 (104)
T 2oka_A 25 LAQELLSTFADDLGKVCLEPGTGGVFRITCDGVQVWERKADGGFPEAKALK 75 (104)
T ss_dssp HHHHHHHHSTTTCSEEEEEEECTTCEEEEETTEEEEEHHHHTSCCCHHHHH
T ss_pred HHHHHHHHcCcccceEEEEeCCCceEEEEECCEEEEEEecCCCCCCHHHHH
Confidence 345677777753356777654 57788999999999999999999976653
No 52
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=67.21 E-value=9.6 Score=24.62 Aligned_cols=36 Identities=11% Similarity=0.333 Sum_probs=28.0
Q ss_pred cceEEEEechHHHHHHhcCCCCCcEEEEEeCCEEEEEE
Q psy13355 66 SSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKS 103 (314)
Q Consensus 66 ~~G~~~v~~k~l~~iik~l~~~~~v~l~~~~~~l~I~~ 103 (314)
+.|.+++|. .+.+.+.--+++ .+.+..+++.+.|+-
T Consensus 20 ~kGqItIPk-eiR~~Lgi~~Gd-~l~i~~~~~~IiL~p 55 (59)
T 1yfb_A 20 ELGRVVIPI-ELRRTLGIAEKD-ALEIYVDDEKIILKK 55 (59)
T ss_dssp TTCEEECCH-HHHHHTTCCTTC-EEEEEEETTEEEEEE
T ss_pred CCCEEEeCH-HHHHHcCCCCCC-EEEEEEECCEEEEEE
Confidence 789999994 677777755555 599999888888764
No 53
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=66.91 E-value=5.8 Score=29.09 Aligned_cols=50 Identities=12% Similarity=0.060 Sum_probs=36.9
Q ss_pred hhHHHHHhhhcCCCCcEEEEEe-CcEEEEEECCEEEEEEeccccCCCccccc
Q psy13355 202 KTVFTLQRLLENKENPVELKIS-NNQIKIIFSNIEIISKLIDGKFLDYKYVI 252 (314)
Q Consensus 202 ~~l~~l~k~l~~~~~~v~i~~~-~~~~~~~~~~~~~~~~li~g~yP~~~~v~ 252 (314)
-..++|+..+++.-++|++.-. ++.+.+..++..+.+|. +|.||+.+.+.
T Consensus 31 ~laqeLl~tF~~~l~eVsL~Pg~gG~FeV~vdg~lVwsRk-~gGFPd~keLk 81 (107)
T 3dex_A 31 WLAQELLTTFETELTELALKPGTGGVFVVRVDDEVVWDRR-EQGFPEPTAVK 81 (107)
T ss_dssp HHHHHHHHHSTTTEEEEEEEEESSSCEEEEETTEEEEEHH-HHCSCCHHHHH
T ss_pred HHHHHHHHhcccccceEEEEeCCCceEEEEECCEEEEEec-CCCCCCHHHHH
Confidence 3446777777752236777654 56788888999999999 99999977654
No 54
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=65.21 E-value=6.1 Score=28.88 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=37.0
Q ss_pred hHHHHHhhhcCCCCcEEEEEe-CcEEEEEECCEEEEEEeccccCCCccccc
Q psy13355 203 TVFTLQRLLENKENPVELKIS-NNQIKIIFSNIEIISKLIDGKFLDYKYVI 252 (314)
Q Consensus 203 ~l~~l~k~l~~~~~~v~i~~~-~~~~~~~~~~~~~~~~li~g~yP~~~~v~ 252 (314)
...+|...+++.-++|++.-. ++.+.+..++..+.+|+.+|.||+...+.
T Consensus 23 laqeLl~tF~~~l~~v~l~P~~~G~FEV~vng~lV~SKk~~ggFPe~~eLk 73 (105)
T 2p0g_A 23 LSQELLHTFSEEIEYVALHPDTGGRFEIFCNGVQIWERKQEGGFPEAKVLK 73 (105)
T ss_dssp HHHHHHHHTTTTEEEEEEEEESTTCEEEEETTEEEEEHHHHTSCCCHHHHH
T ss_pred HHHHHHHHcCcccceEEEEeCCCceEEEEECCEEEEEEecCCCCCCHHHHH
Confidence 345666677642235666543 57788899999999999999999987765
No 55
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=62.98 E-value=19 Score=26.75 Aligned_cols=53 Identities=8% Similarity=0.031 Sum_probs=45.1
Q ss_pred EEehHHHHHHHhHHhhhhcCCCCeEEEEEEC--CEEEEEEecCCcceeEEEEeec
Q psy13355 261 LVNRNKLLRSLQRISIISNDKLKGVRLVIKP--NYLKITVSSSNREKASSTDLIY 313 (314)
Q Consensus 261 ~v~~~~l~~al~rv~~~~~~~~~~v~l~~~~--~~l~l~~~~~d~G~a~e~~~~~ 313 (314)
.+++.+|.++++++.-+....+..+.|.+.+ |.+.+.-.|.+.|+.--+||.+
T Consensus 34 ~~~~eel~~av~~lN~~~~~~n~~L~F~vdee~~~~vVkVvD~~TgEVIRqIPpE 88 (117)
T 2hc5_A 34 QVSYTNLAEMVGEMNKLLEPSQVHLKFELHDKLNEYYVKVIEDSTNEVIREIPPK 88 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSSCCEEEEEEEETTEEEEEEEETTTTEEEEEECHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCcEEEeCChH
Confidence 4678999999999998876667788998874 6999999999999998888864
No 56
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=59.06 E-value=13 Score=26.70 Aligned_cols=46 Identities=9% Similarity=0.045 Sum_probs=33.0
Q ss_pred HHHHHhhhcCCCCcEEEEEe-----CcEEEEEECCEEEEEEeccccCCCccccc
Q psy13355 204 VFTLQRLLENKENPVELKIS-----NNQIKIIFSNIEIISKLIDGKFLDYKYVI 252 (314)
Q Consensus 204 l~~l~k~l~~~~~~v~i~~~-----~~~~~~~~~~~~~~~~li~g~yP~~~~v~ 252 (314)
..+|...+++ .+.+.+. ++.+.+..++..+.+|+-+|.||+...++
T Consensus 23 aqeLl~~Fp~---~l~V~~~l~p~~~G~FEV~vng~lV~SKk~~ggFP~~~el~ 73 (96)
T 2npb_A 23 KEKLEHEFPG---CLDICGEGTPQVTGFFEVTVAGKLVHSKKRGDGYVDTESKF 73 (96)
T ss_dssp HHHHHHHSBT---TEEEEECCCSSCCSCCEEEETTEEEEETTTTCCSSCSHHHH
T ss_pred HHHHHHhCCc---ceEEEEEEcCCCCcEEEEEECCEEEEEEecCCCCCChHHHH
Confidence 3556666653 3554443 36688888999999999999999987644
No 57
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=55.99 E-value=79 Score=25.51 Aligned_cols=142 Identities=9% Similarity=0.131 Sum_probs=80.9
Q ss_pred ccCCCCccccccEEEEEECCEEEEEEecCeEEEEEE-EEeeeec--cceEEEEech---------------HHHHHHhcC
Q psy13355 23 VEKKNILPILSNILVCKNSEKISFLSTDTEVQITTY-TAVGYGN--SSINIIVAAR---------------KFIDILRSL 84 (314)
Q Consensus 23 ~~~~~~~pil~~i~i~~~~~~l~l~atd~~~~~~~~-~~~~~~~--~~G~~~v~~k---------------~l~~iik~l 84 (314)
+-++.+.++-.+|.++.+++.+++.|--++++.... ...+... +.+.+.|..+ .+..++...
T Consensus 4 i~~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GV 83 (190)
T 3iz5_F 4 ILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWFGTRRTMAAIRTAISHVQNLITGV 83 (190)
T ss_dssp CCCCEEEECCTTCEEEEETTEEEEEETTEEEEEECCCTTEEEEEETTTTEEEEEESCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCccEECCCCCEEEEeCCEEEEECCCceEEEEccCCcEEEEEEcCCCEEEEEECCCCHHHHHHHHHHHHHHHhheeee
Confidence 445567778899999999999999999888876543 2223222 5677777521 133455555
Q ss_pred CCCCcEEEEEeC--CE--EEEEECCeEEEEecCCCCCCCCCcCCCCCceE----------EEEeHH------HHHHHHhh
Q psy13355 85 PETEKVTIYIEN--KH--MFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFE----------FTLSQK------TLKCILNM 144 (314)
Q Consensus 85 ~~~~~v~l~~~~--~~--l~I~~g~~~~~l~~~~~~~fP~~~~~~~~~~~----------~~v~~~------~l~~~i~~ 144 (314)
..+-.-.++..+ -. +.+...+....|...=...+|..-..++ +.. +.+.+. .+...|++
T Consensus 84 t~Gf~~kL~lvgvgyr~~~~i~~~G~~l~l~N~LG~sh~v~~~ip~-GV~v~v~~~~k~eIil~G~Dke~Vgq~AA~Irq 162 (190)
T 3iz5_F 84 TKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLE-GVTILRSEKVKDELVLDGNDIELVSRSAALINQ 162 (190)
T ss_dssp HTCEEEEEEEECSSSCCEEEEETTTTEEEEESGGGCSSCEEEECCS-SCEEEECCTTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred ccCEEEEEEEEEEcccceeEEccCCCEEEEEecCCccccEEEECCC-CeEEEEcCCCCCEEEEEECCHHHHHHHHHHHHh
Confidence 555335555442 22 3333233445554222345554433333 333 444332 34555555
Q ss_pred hccccccccccceeeeEEEEEE
Q psy13355 145 VYFSIAQQDIRYYLNGLLLSFQ 166 (314)
Q Consensus 145 v~~a~s~~~~~~~l~gv~l~~~ 166 (314)
... +-+.+.|-.|.|||+.-+
T Consensus 163 ~~~-vk~kD~R~F~DGiyv~ek 183 (190)
T 3iz5_F 163 KCH-VKNKDIRKFLDGIYVSDK 183 (190)
T ss_dssp HTC-CCSSCTTTCCCEEEECCC
T ss_pred hcc-ccCCcccEeecCEEEEee
Confidence 442 446788999999998744
No 58
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=54.29 E-value=14 Score=26.89 Aligned_cols=49 Identities=18% Similarity=0.146 Sum_probs=35.9
Q ss_pred hHHHHHhhhcCCCCcEEEEEe-CcEEEEEECCEEEEEEeccccCCCcccc
Q psy13355 203 TVFTLQRLLENKENPVELKIS-NNQIKIIFSNIEIISKLIDGKFLDYKYV 251 (314)
Q Consensus 203 ~l~~l~k~l~~~~~~v~i~~~-~~~~~~~~~~~~~~~~li~g~yP~~~~v 251 (314)
..++|...+++.-.+|++.-. .+.+.+..++..+.+|+-+|.||+...+
T Consensus 27 laqeLl~tF~~~l~~V~l~P~~~G~FEV~vng~lV~SKk~~ggFPe~~el 76 (105)
T 2fa8_A 27 MAQEILQTFASDIGEVSLIPSTGGLFEITVDGTIIWERKRDGGFPGPKEL 76 (105)
T ss_dssp HHHHHHHHHGGGCSEEEEEEECTTCEEEEETTEEEEEHHHHTSCCCHHHH
T ss_pred HHHHHHHHcCcccceEEEEcCCCcEEEEEECCEEEEEeccCCCCCCHHHH
Confidence 335666667642245776654 5678888899999999999999987655
No 59
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=47.75 E-value=91 Score=25.19 Aligned_cols=141 Identities=11% Similarity=0.116 Sum_probs=75.1
Q ss_pred cCCCCccccccEEEEEECCEEEEEEecCeEEEEEEE-EeeeeccceE---EEEe----chH-----------HHHHHhcC
Q psy13355 24 EKKNILPILSNILVCKNSEKISFLSTDTEVQITTYT-AVGYGNSSIN---IIVA----ARK-----------FIDILRSL 84 (314)
Q Consensus 24 ~~~~~~pil~~i~i~~~~~~l~l~atd~~~~~~~~~-~~~~~~~~G~---~~v~----~k~-----------l~~iik~l 84 (314)
-.+.+.++-.+|.++.+++.+++.|--++++....- ...+..+.+. +.|. .++ +..++...
T Consensus 5 ~~k~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~~~v~i~~~~~~~~~i~v~~~~~~k~~~a~~Gt~rsli~NmI~GV 84 (192)
T 2zkr_e 5 LSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGV 84 (192)
T ss_dssp -----CCCCTTCEEEEETTEEEEEETTEEEEEECCSSSCEEEEETTTTCEEEEECSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcEEcCCCCEEEEeCCEEEEECCCeEEEEEeCCCCEEEEEecCceeEEEEEcCCCCHHHHHHHHHHHHHHhCEEEee
Confidence 345567778899999999999999998888765432 2233224555 6663 121 34444445
Q ss_pred CCCCcEEEEEeC--CEEEEEE--CCeEEEEecCCCCCCCCCcCCCCCc----------eEEEEeHH------HHHHHHhh
Q psy13355 85 PETEKVTIYIEN--KHMFIKS--GKSKFTLQTLDAKEYPIMTLNSKYD----------FEFTLSQK------TLKCILNM 144 (314)
Q Consensus 85 ~~~~~v~l~~~~--~~l~I~~--g~~~~~l~~~~~~~fP~~~~~~~~~----------~~~~v~~~------~l~~~i~~ 144 (314)
..+-.-.|++.+ -...+.. .+....|+-.-...+|-.-..++ + ..+.+.+. .+...|++
T Consensus 85 t~Gf~~~L~lvGvGyra~v~~e~~g~~l~l~N~LG~Sh~v~~~iP~-gv~v~v~~~~~t~I~v~GiDKq~Vgq~AA~IR~ 163 (192)
T 2zkr_e 85 TLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRP-GVACSVSQAQKDELILEGNDIELVSNSAALIQQ 163 (192)
T ss_dssp HTCEEEEEEEECSSSCCEEEECTTCSEEEEESGGGCSSCEEEECCS-SCEEEECSSCSSEEEEEESCHHHHHHHHHHHHH
T ss_pred ccCcEEEEEEEEecceeEEEEccCCCEEEEeCcCCCcccEEeeCCC-CeEEEEcCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 555345666543 2333222 23344442112334443322222 2 34444433 34444555
Q ss_pred hccccccccccceeeeEEEEEE
Q psy13355 145 VYFSIAQQDIRYYLNGLLLSFQ 166 (314)
Q Consensus 145 v~~a~s~~~~~~~l~gv~l~~~ 166 (314)
... +-+.+.|-.|.|||+.-.
T Consensus 164 ~~~-vk~kD~R~F~Dgiyv~~k 184 (192)
T 2zkr_e 164 ATT-VKNKDIRKFLDGIYVSEK 184 (192)
T ss_dssp HTC-CSSSCTTTCCCEEEEEEC
T ss_pred hCc-CCCCCccEeecCEEEEEe
Confidence 443 345678889999999755
No 60
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=47.00 E-value=74 Score=25.53 Aligned_cols=138 Identities=9% Similarity=0.132 Sum_probs=79.5
Q ss_pred CCccccccEEEEEECCEEEEEEecCeEEEEEE-EEeeeeccceEEEEech---------------HHHHHHhcCCCCCcE
Q psy13355 27 NILPILSNILVCKNSEKISFLSTDTEVQITTY-TAVGYGNSSINIIVAAR---------------KFIDILRSLPETEKV 90 (314)
Q Consensus 27 ~~~pil~~i~i~~~~~~l~l~atd~~~~~~~~-~~~~~~~~~G~~~v~~k---------------~l~~iik~l~~~~~v 90 (314)
.+.++-++|.++.+++.+++.|--++++.... ...+...+.+.+.|... .+.+++.....+-.-
T Consensus 9 ~~I~IP~gV~v~i~~~~V~VkGpkG~L~~~~~~~~v~i~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~Gf~~ 88 (184)
T 3j21_F 9 EEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFTEDGNVVIYKDFPRRKDVAIARTFAAHIRNMIKGVTEGFTY 88 (184)
T ss_dssp EEEECCSSCEEEESSSEEEEECSSCEEEEECCCTTCEEEEETTEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred EEEeCCCCcEEEEeCCEEEEEcCCeEEEEEecCCcEEEEEeCCEEEEEECCCCHHHHHHHHHHHHHHHhhheeeccCeEE
Confidence 35566789999999999999999988876653 22333224577777531 133455555555335
Q ss_pred EEEEe--CC--EEEEEECCeEEEEecCCCCCCCCCcCCCCCceEEEEe-------H------HHHHHHHhhhcccccccc
Q psy13355 91 TIYIE--NK--HMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLS-------Q------KTLKCILNMVYFSIAQQD 153 (314)
Q Consensus 91 ~l~~~--~~--~l~I~~g~~~~~l~~~~~~~fP~~~~~~~~~~~~~v~-------~------~~l~~~i~~v~~a~s~~~ 153 (314)
.++.. +- ++.+. | ....+...=...+|..-..++ +..+.++ + .++...|++... +-+.+
T Consensus 89 kL~lvgvgypira~~~-g-~~l~l~n~LG~sh~v~~~ip~-gv~v~v~~~~Iil~G~Dke~Vgq~AA~Ir~~~~-vK~KD 164 (184)
T 3j21_F 89 KLKVVYSHFPISVKVQ-G-DEVIIENFLGEKAPRKAKILP-GVTVKVRGQEIIVEGIDKEAVGQTAANIEQATR-ITKWD 164 (184)
T ss_dssp EEEEECSSSCCEEEEE-T-TEEEEECGGGCSSCEEEECCT-TEEEEEETTEEEEEESCHHHHHHHHHHHHHHHC-CCSSC
T ss_pred EEEEEEecccceEEEc-C-CEEEEEecCCccccEEEECCC-CeEEEecCCEEEEEECCHHHHHHHHHHHhhccc-cCCCc
Confidence 55554 23 34433 3 334443222445665444443 3444333 2 234455555543 45678
Q ss_pred ccceeeeEEEEEECC
Q psy13355 154 IRYYLNGLLLSFQKK 168 (314)
Q Consensus 154 ~~~~l~gv~l~~~~~ 168 (314)
.|..|.|||+.-+++
T Consensus 165 iR~F~DGiyv~ek~~ 179 (184)
T 3j21_F 165 RRIFQDGIYIVEKAG 179 (184)
T ss_dssp SSSCCCEEEESCSSS
T ss_pred ccEeeCCEEEEecCc
Confidence 999999999976543
No 61
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=45.89 E-value=97 Score=24.98 Aligned_cols=140 Identities=14% Similarity=0.151 Sum_probs=78.6
Q ss_pred CCCCccccccEEEEEECCEEEEEEecCeEEEEEE-EEeeee-ccceEEEEec----h-----------HHHHHHhcCCCC
Q psy13355 25 KKNILPILSNILVCKNSEKISFLSTDTEVQITTY-TAVGYG-NSSINIIVAA----R-----------KFIDILRSLPET 87 (314)
Q Consensus 25 ~~~~~pil~~i~i~~~~~~l~l~atd~~~~~~~~-~~~~~~-~~~G~~~v~~----k-----------~l~~iik~l~~~ 87 (314)
.+.+.++-++|.++.+++.+++.|--+++..... ...+.. .+.+.+.|.. + .+..++.....+
T Consensus 6 ~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~G 85 (191)
T 3u5e_H 6 TEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNGGRKHVAALRTVKSLVDNMITGVTKG 85 (191)
T ss_dssp EEEEEECCTTCEEEEETTEEEEEETTEEEEEECTTTCCEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ecccEECCCCcEEEEeCCEEEEEcCCeEEEEEccCCcEEEEEecCCeEEEEECCCCHHHHHHHHHHHHHHHhheeeeccC
Confidence 3446667789999999999999998888766542 122222 1356666642 1 134455555555
Q ss_pred CcEEEEEeC--CE--EEE--EECCeEEEEecCCCCCCCCCcCCCCCceEEEEeH----------H------HHHHHHhhh
Q psy13355 88 EKVTIYIEN--KH--MFI--KSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQ----------K------TLKCILNMV 145 (314)
Q Consensus 88 ~~v~l~~~~--~~--l~I--~~g~~~~~l~~~~~~~fP~~~~~~~~~~~~~v~~----------~------~l~~~i~~v 145 (314)
-.-.++..+ -. +.+ .-.+....|...=...+|..-..++ +..+.++. . .+...|++.
T Consensus 86 f~~kL~lvgvgyri~a~v~~~~~G~~l~l~n~LG~sh~v~~~ip~-Gv~v~v~~~~kteIil~G~Dke~Vgq~AA~Irq~ 164 (191)
T 3u5e_H 86 YKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRD-GVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQI 164 (191)
T ss_dssp EEEEEEEECSSSCCEEEEECSSSCCEEEEECGGGCSSCEEEECCT-TEEEEECTTSTTEEEEEESCHHHHHHHHHHHHHT
T ss_pred EEEEEEEEEEeeeEEEEEEEcCCCCEEEEEeccCCcccEEEECCC-CEEEEECCCCCCEEEEEECCHHHHHHHHHHHHhh
Confidence 335555543 22 223 1133455554222445665444443 34444443 2 344555554
Q ss_pred ccccccccccceeeeEEEEEE
Q psy13355 146 YFSIAQQDIRYYLNGLLLSFQ 166 (314)
Q Consensus 146 ~~a~s~~~~~~~l~gv~l~~~ 166 (314)
.. +-+.+.|-.|.|||+.-+
T Consensus 165 ~~-vk~kD~R~FlDGiyv~ek 184 (191)
T 3u5e_H 165 CR-VRNKDIRKFLDGIYVSHK 184 (191)
T ss_dssp TC-CCSSCTTTCCCEEEEEEE
T ss_pred cc-cCCCcccEeecCeEEEEe
Confidence 42 345788999999999865
No 62
>2ljk_A Protein C17ORF37; MIEN1, oncoprotein, signaling protein; NMR {Homo sapiens}
Probab=44.08 E-value=4.6 Score=30.18 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=34.3
Q ss_pred HHHHhhhcCCCCcEEEEEe-CcEEEEEECCEEEEEEeccccCCCccccc
Q psy13355 205 FTLQRLLENKENPVELKIS-NNQIKIIFSNIEIISKLIDGKFLDYKYVI 252 (314)
Q Consensus 205 ~~l~k~l~~~~~~v~i~~~-~~~~~~~~~~~~~~~~li~g~yP~~~~v~ 252 (314)
++|+..+++ .+|++... .+.+.+..++-.+++|+-+|.||+...+.
T Consensus 46 qeLl~tFp~--~~V~l~pg~~G~FeV~v~g~li~sk~~~g~FPe~~el~ 92 (117)
T 2ljk_A 46 SAVKEQYPG--IEIESRLGGTGAFEIEINGQLVFSKLENGGFPYEKDLI 92 (117)
T ss_dssp HHHTTTCSS--SCCEEEECSSSCEEEETTSSCCBCHHHHCSCCCTTTTT
T ss_pred HHHHhhCCc--ceEEEecCCCceEEEEECCEEEEEEccCCCCCCHHHHH
Confidence 455555554 56777655 46788888888999999999999988654
No 63
>2cy5_A Epidermal growth factor receptor pathway substrate 8-like protein 1; structural genomics, signal transduction, phosphorylation, PTB domain, NPPSFA; 1.90A {Mus musculus} SCOP: b.55.1.2 PDB: 2cy4_A
Probab=35.77 E-value=84 Score=24.01 Aligned_cols=55 Identities=5% Similarity=0.170 Sum_probs=43.1
Q ss_pred ceEEEEehHH----HHHHHhHHhhhhcCCC---CeEEEEEECCEEEEEEecCCcceeEEEEeec
Q psy13355 257 EKSFLVNRNK----LLRSLQRISIISNDKL---KGVRLVIKPNYLKITVSSSNREKASSTDLIY 313 (314)
Q Consensus 257 ~~~~~v~~~~----l~~al~rv~~~~~~~~---~~v~l~~~~~~l~l~~~~~d~G~a~e~~~~~ 313 (314)
=.+|.++++. ..++++|+..+-..+. +.+.|.++++.+.+. +.+.|+--|..|+.
T Consensus 16 L~Tf~l~~~~~~~~~~D~irkL~~ld~kg~iW~Q~m~L~v~~~~v~Ll--D~et~eelE~fpl~ 77 (140)
T 2cy5_A 16 LVTFCLGEEDGVHTVEDASRKLAVMDSQGRVWAQEMLLRVSPSQVTLL--DPVSKEELESYPLD 77 (140)
T ss_dssp EEEEECCTTSSCCSHHHHHHHHHHHHHTTCCCCEEEEEEECSSEEEEE--CTTTCCEEEEEEGG
T ss_pred eEEEEeCCcCCcCCHHHHHHHHHhHHHcCCcccceeEEEECCCeEEEE--ccCccchhhcCChh
Confidence 3567777765 7899999999864443 789999999999887 67888878888763
No 64
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=33.99 E-value=83 Score=21.19 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=27.4
Q ss_pred ceEEEEechHHHHHHhcCCCCCcEEEEEeCCEEEEEECC
Q psy13355 67 SINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGK 105 (314)
Q Consensus 67 ~G~~~v~~k~l~~iik~l~~~~~v~l~~~~~~l~I~~g~ 105 (314)
.+.+.+| +.+.+-+.--+++. |.++.+++.+.|+.-+
T Consensus 12 s~~v~iP-k~~~~~lgl~~gd~-v~i~~~~~~iii~p~~ 48 (82)
T 1mvf_D 12 SPAVRIP-ATLMQALNLNIDDE-VKIDLVDGKLIIEPVR 48 (82)
T ss_dssp EEEEECC-HHHHHHTTCCTTCB-EEEEEETTEEEEEEC-
T ss_pred ccEEEEC-HHHHHHcCCCCCCE-EEEEEECCEEEEEECC
Confidence 4678888 46777777666664 9999998888887654
No 65
>1b77_A GP45, protein (sliding clamp); replisome; 2.10A {Enterobacteria phage RB69} SCOP: d.131.1.2 d.131.1.2 PDB: 1b8h_A* 1czd_A* 3u5z_G* 3u60_G* 3u61_G*
Probab=29.38 E-value=2.4e+02 Score=23.33 Aligned_cols=130 Identities=15% Similarity=0.170 Sum_probs=80.6
Q ss_pred eEEEEEECCEEEEEEeccceEEEEEEecCCCCCCcceEEE-ehhhHHHHHhhhcCCCCcEEEEEeCc-EEEEEECCEEEE
Q psy13355 160 GLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIII-PRKTVFTLQRLLENKENPVELKISNN-QIKIIFSNIEII 237 (314)
Q Consensus 160 gv~l~~~~~~l~~~aTDg~Rl~~~~~~~~~~~~~~~~~ii-p~~~l~~l~k~l~~~~~~v~i~~~~~-~~~~~~~~~~~~ 237 (314)
||.|.. |+.+.-.+-++--++..+++-+ . +.++-| .-...-.++++++ +.-+|..+++ ++.++.++....
T Consensus 20 SI~lkp-G~~i~T~s~~~~i~AeA~I~d~--f--d~e~~IYDL~~FL~iL~L~~---~~aei~~~~~~~I~I~~~rs~~~ 91 (228)
T 1b77_A 20 GILLSQ-GKFIMTRAVNGTTYAEANISDE--I--DFDVALYDLNSFLSILSLVS---DDAEISMHTDGNIKIADTRSTVY 91 (228)
T ss_dssp CEEECS-EEEEEEECTTSSEEEEEEEEEE--E--CSCEEESCHHHHHHHHTTSC---TTCEEEECTTSSEEEECSSEEEE
T ss_pred ceEEcC-CCEEEEEeCCCcEEEEEEeccc--C--cceeeeeeHHHHHHHHhccC---CCCeEEecCCceEEEeCCCeEEE
Confidence 455552 2344455566677777777533 2 223322 2333334444443 3566666665 899999998887
Q ss_pred EEeccc---cCCCcccccccCcceEEEEehHHHHHHHhHHhhhhcCCCCeEEEEEECCEEEEEEecC
Q psy13355 238 SKLIDG---KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSS 301 (314)
Q Consensus 238 ~~li~g---~yP~~~~v~p~~~~~~~~v~~~~l~~al~rv~~~~~~~~~~v~l~~~~~~l~l~~~~~ 301 (314)
.+.-+. .+|.=+--+|. .+..|.+..++|....+-+..+. -..+.|.-.+|++.+.+.+.
T Consensus 92 ~~~adp~~I~~P~k~i~~P~-~dv~F~L~~edl~ql~kas~~l~---l~dl~~~~~~g~i~i~~~~~ 154 (228)
T 1b77_A 92 WPAADKSTIVFPNKPIQFPV-ASVITEIKAEDLQQLLRVSRGLQ---IDTIAITNKDGKIVINGYNK 154 (228)
T ss_dssp ECCBCGGGSCCCSSCCCCCC-CSEEEEECHHHHHHHHHHHHHTT---CCEEEEEEETTEEEEEEECT
T ss_pred EEccCcccccCCccccCCCC-CCEEEEECHHHHHHHHHHHHhcC---CCeEEEEecCCEEEEEEeec
Confidence 777664 45544443443 35789999999988777766664 23577777899999986443
No 66
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=26.95 E-value=15 Score=22.83 Aligned_cols=35 Identities=11% Similarity=0.170 Sum_probs=25.5
Q ss_pred cceEEEEechHHHHHHhcCCCCCcEEEEEeCCEEEEE
Q psy13355 66 SSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIK 102 (314)
Q Consensus 66 ~~G~~~v~~k~l~~iik~l~~~~~v~l~~~~~~l~I~ 102 (314)
+.|.+++|. .+.+.+.--+++ .+.+..+++.+.|+
T Consensus 10 ~kgqi~IPk-~ir~~lgi~~Gd-~v~i~~~~~~ivl~ 44 (53)
T 2l66_A 10 RNYQVTIPA-KVRQKFQIKEGD-LVKVTFDESEGVVK 44 (53)
T ss_dssp SSSCBCCCH-HHHHHSCCCTTC-EEEEEECSSSCCEE
T ss_pred CCCEEEeCH-HHHHHcCcCCCC-EEEEEEECCEEEEE
Confidence 689999995 567777644455 59999887767664
No 67
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=26.04 E-value=1.1e+02 Score=24.51 Aligned_cols=140 Identities=12% Similarity=0.172 Sum_probs=74.4
Q ss_pred CCCCccccccEEEEEECCEEEEEEecCeEEEEEE-EEeeeec-cceEEEEec----h-----------HHHHHHhcCCCC
Q psy13355 25 KKNILPILSNILVCKNSEKISFLSTDTEVQITTY-TAVGYGN-SSINIIVAA----R-----------KFIDILRSLPET 87 (314)
Q Consensus 25 ~~~~~pil~~i~i~~~~~~l~l~atd~~~~~~~~-~~~~~~~-~~G~~~v~~----k-----------~l~~iik~l~~~ 87 (314)
.+.+.++-.+|.++.+++.+++.|--++++.... ...+... +.+.+.|.. + .+..++.....+
T Consensus 6 ~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~G 85 (188)
T 4a17_E 6 TEVNVPIPDKVTITAKQRVVEVKGPLGTIKRAFRYASVDIQKPTADNVKLQIWQASRKERAVLQSIASQIKNMIRGVTEG 85 (188)
T ss_dssp EEEECCCCTTCEEEEETTEEEEEETTEEEEEECTTSCCEECCCBTTBCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ecccEECCCCcEEEEeCCEEEEEcCCeEEEEEccCCeEEEEEccCCeEEEEECCCCHHHHHHHHHHHHHHHhheEeeccC
Confidence 3445667789999999999999999888776542 1223321 455565542 1 134444444555
Q ss_pred CcEEEEEeC--CE--EEEEECCeEEEEecCCCCCCCCCcCCCCCc----------eEEEEeHHH------HHHHHhhhcc
Q psy13355 88 EKVTIYIEN--KH--MFIKSGKSKFTLQTLDAKEYPIMTLNSKYD----------FEFTLSQKT------LKCILNMVYF 147 (314)
Q Consensus 88 ~~v~l~~~~--~~--l~I~~g~~~~~l~~~~~~~fP~~~~~~~~~----------~~~~v~~~~------l~~~i~~v~~ 147 (314)
-.-.++..+ -. +.+...+....|...=...+|..-..++ + ..+.+.+.+ +...|++...
T Consensus 86 f~~kL~lvgvgyr~~~~v~~~G~~l~l~N~LG~sh~v~~~ip~-gv~v~v~~~~k~eIil~G~Dke~Vgq~AA~Ir~~~~ 164 (188)
T 4a17_E 86 YKFKMKLAFAHFPIQEAVAKDGSSIEIKHFLGEKRIRRIQALP-GVKISRKDEEKNTLTLQGIDLNNVSQTCALIHQSCL 164 (188)
T ss_dssp EEEEEEEECSSSCCEEEECSSSCEEEEECGGGCCCEEEEECCT-TCEEECCTTSSSEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred eEEEEEEEEEcccceEEEccCCCEEEEEeccCCcccEEEECCC-CeEEEECCCCCCEEEEEEcCHHHHHHHHHHHHhhcc
Confidence 334555432 22 2222123344443111334443222222 2 345554433 4445555442
Q ss_pred ccccccccceeeeEEEEEE
Q psy13355 148 SIAQQDIRYYLNGLLLSFQ 166 (314)
Q Consensus 148 a~s~~~~~~~l~gv~l~~~ 166 (314)
+-+.+.|-.|.|||+.-+
T Consensus 165 -vk~kD~R~F~DGiyv~ek 182 (188)
T 4a17_E 165 -VKEKDIRQFLDGIYVSDK 182 (188)
T ss_dssp -CCSSCHHHHCCEEEEEEE
T ss_pred -cCCCcccEeecCeEEEEe
Confidence 345788999999999755
Done!