Your job contains 1 sequence.
>psy13355
MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA
VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI
MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL
TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL
IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS
SNREKASSTDLIYH
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy13355
(314 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|SO_0009 - symbol:SO_0009 "DNA polymerase III, be... 494 3.3e-47 1
TIGR_CMR|CBU_0002 - symbol:CBU_0002 "DNA polymerase III, ... 488 1.4e-46 1
UNIPROTKB|P0A988 - symbol:dnaN species:83333 "Escherichia... 483 4.8e-46 1
UNIPROTKB|Q9KVX5 - symbol:dnaN "DNA polymerase III subuni... 452 9.3e-43 1
TIGR_CMR|VC_0013 - symbol:VC_0013 "DNA polymerase III, be... 452 9.3e-43 1
TIGR_CMR|SPO_0150 - symbol:SPO_0150 "DNA polymerase III, ... 346 1.6e-31 1
TIGR_CMR|ECH_1009 - symbol:ECH_1009 "DNA polymerase III, ... 328 1.3e-29 1
TIGR_CMR|GSU_0001 - symbol:GSU_0001 "DNA polymerase III, ... 327 1.6e-29 1
TIGR_CMR|APH_1097 - symbol:APH_1097 "DNA polymerase III, ... 283 7.6e-25 1
TIGR_CMR|BA_0002 - symbol:BA_0002 "DNA polymerase III, be... 268 2.9e-23 1
TIGR_CMR|NSE_0170 - symbol:NSE_0170 "DNA polymerase III, ... 263 1.0e-22 1
TIGR_CMR|CHY_2709 - symbol:CHY_2709 "DNA polymerase III, ... 241 2.8e-20 1
TIGR_CMR|BA_2684 - symbol:BA_2684 "DNA polymerase III, be... 219 2.2e-17 1
TIGR_CMR|CJE_0002 - symbol:CJE_0002 "DNA polymerase III, ... 207 3.4e-15 1
TIGR_CMR|DET_1227 - symbol:DET_1227 "DNA polymerase III, ... 201 3.0e-14 1
UNIPROTKB|Q50790 - symbol:dnaN "DNA polymerase III subuni... 124 4.9e-05 1
>TIGR_CMR|SO_0009 [details] [associations]
symbol:SO_0009 "DNA polymerase III, beta subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR001001 InterPro:IPR022634
InterPro:IPR022635 InterPro:IPR022637 Pfam:PF00712 Pfam:PF02767
Pfam:PF02768 PIRSF:PIRSF000804 SMART:SM00480 GO:GO:0005737
GO:GO:0003677 GO:GO:0006260 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0008408 GO:GO:0003887 GO:GO:0009360 HOGENOM:HOG000071791
KO:K02338 OMA:DYNRVIP ProtClustDB:PRK05643 TIGRFAMs:TIGR00663
HSSP:P00583 RefSeq:NP_715651.1 ProteinModelPortal:Q8EKT1 SMR:Q8EKT1
GeneID:1167907 KEGG:son:SO_0009 PATRIC:23519709 Uniprot:Q8EKT1
Length = 366
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 107/309 (34%), Positives = 181/309 (58%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN-S 66
+++A+L PLQ+V VE+++ LPIL+N+LV + + TD EV++ AV +G+
Sbjct: 6 DRDALLKPLQLVCGAVERRHNLPILANLLVEVSGHSLKLTGTDLEVELVGQ-AVIHGDIE 64
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSK 126
V A+K +DI++SLPE ++ + ++ ++SG+S+F+L TL A+EYP + +
Sbjct: 65 EGRTTVPAKKLLDIVKSLPEQSELKVEQQDNKWLLRSGRSRFSLATLPAEEYPNVEA-FQ 123
Query: 127 YDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVN 186
+ EFTL Q LK +++ FS+A QD+RYYLNGLL+ + + A+++DGHRL
Sbjct: 124 AEIEFTLKQGVLKSLIDATQFSMANQDVRYYLNGLLIETEGNMLRAIATDGHRLALSHRV 183
Query: 187 IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQXXXXXXXXXXXXXXXDGKFL 246
I+ + +I+PRK V + RLLE + + + I +N DG+F
Sbjct: 184 IEAQLPE-KQVIVPRKGVMEMARLLETDDLDIAISIGDNAIRATTSTTVFTSKLVDGRFP 242
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
DY+ V+ +K + +RN ++L R SI+SN+K +GVR+ ++ LKIT ++ +E+A
Sbjct: 243 DYRRVLPKGGDKIVIASRNHFKQALTRASILSNEKFRGVRIQLEAGLLKITANNPEQEEA 302
Query: 307 SST-DLIYH 314
D+ Y+
Sbjct: 303 EEIIDVDYN 311
>TIGR_CMR|CBU_0002 [details] [associations]
symbol:CBU_0002 "DNA polymerase III, beta subunit"
species:227377 "Coxiella burnetii RSA 493" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001001 InterPro:IPR022634
InterPro:IPR022635 InterPro:IPR022637 Pfam:PF00712 Pfam:PF02767
Pfam:PF02768 PIRSF:PIRSF000804 SMART:SM00480 GO:GO:0005737
GO:GO:0003677 GO:GO:0006260 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0008408 GO:GO:0003887 GO:GO:0009360 HOGENOM:HOG000071791
KO:K02338 OMA:DYNRVIP ProtClustDB:PRK05643 TIGRFAMs:TIGR00663
RefSeq:NP_819058.1 HSSP:P00583 ProteinModelPortal:Q83FD7
GeneID:1207922 KEGG:cbu:CBU_0002 PATRIC:17928681
BioCyc:CBUR227377:GJ7S-3-MONOMER Uniprot:Q83FD7
Length = 369
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 102/303 (33%), Positives = 172/303 (56%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
+N + +L PLQ+VI +VE+K LPILSN+L+ ++++S TD EV++ T +
Sbjct: 3 LNLIRETLLKPLQLVIGVVERKQTLPILSNVLLSIETDQLSITGTDLEVELIGQTKLDKN 62
Query: 65 NS-SINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTL 123
++ S + + RK +DI R+LP+ + +Y + + + ++SG+S+F L TL ++++P +
Sbjct: 63 STESSRLTLPGRKLMDICRALPDNAPIELYRDKEKIILRSGRSRFMLSTLPSEDFPAVER 122
Query: 124 NSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
E L Q T + +L +F++AQQD+RYYLNGLLL + A+++DGHRL
Sbjct: 123 RES-QLELALPQSTFRHLLYRTHFAMAQQDVRYYLNGLLLETYPNKLRAIATDGHRLAAN 181
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQXXXXXXXXXXXXXXXDG 243
+ + IIIPRK + L RLLE E ++I NN +G
Sbjct: 182 TLLVQTNTEHRLQIIIPRKGIIELLRLLEEDEALATIRIGNNHIGVSTNDFTFTSKLIEG 241
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNR 303
+F D + VI +K F+++R+ L ++L R +I+ N+K KGVR ++ L+I ++ +
Sbjct: 242 RFPDCERVIPKGGDKQFVIDRDILKQALSRTAILCNEKFKGVRFELRQGLLRILATNPEQ 301
Query: 304 EKA 306
E A
Sbjct: 302 EAA 304
>UNIPROTKB|P0A988 [details] [associations]
symbol:dnaN species:83333 "Escherichia coli K-12"
[GO:0006974 "response to DNA damage stimulus" evidence=IEP]
[GO:0009360 "DNA polymerase III complex" evidence=IEA] [GO:0008408
"3'-5' exonuclease activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IPI] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA] InterPro:IPR001001
InterPro:IPR022634 InterPro:IPR022635 InterPro:IPR022637
Pfam:PF00712 Pfam:PF02767 Pfam:PF02768 PIRSF:PIRSF000804
SMART:SM00480 GO:GO:0005829 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0006974 EMBL:L10328 GO:GO:0008408 GO:GO:0006271 GO:GO:0003887
EMBL:J01602 GO:GO:0009360 EMBL:M19876 EMBL:M13822 EMBL:K02179
EMBL:X04341 PIR:A91510 RefSeq:NP_418156.1 RefSeq:YP_491734.1
PDB:1JQJ PDB:1JQL PDB:1MMI PDB:1OK7 PDB:1UNN PDB:1WAI PDB:2POL
PDB:2XUR PDB:3BEP PDB:3D1E PDB:3D1F PDB:3D1G PDB:3F1V PDB:3PWE
PDB:3Q4J PDB:3Q4K PDB:3Q4L PDB:3QSB PDBsum:1JQJ PDBsum:1JQL
PDBsum:1MMI PDBsum:1OK7 PDBsum:1UNN PDBsum:1WAI PDBsum:2POL
PDBsum:2XUR PDBsum:3BEP PDBsum:3D1E PDBsum:3D1F PDBsum:3D1G
PDBsum:3F1V PDBsum:3PWE PDBsum:3Q4J PDBsum:3Q4K PDBsum:3Q4L
PDBsum:3QSB ProteinModelPortal:P0A988 SMR:P0A988 DIP:DIP-36038N
IntAct:P0A988 PRIDE:P0A988 EnsemblBacteria:EBESCT00000003065
EnsemblBacteria:EBESCT00000003066 EnsemblBacteria:EBESCT00000003067
EnsemblBacteria:EBESCT00000003068 EnsemblBacteria:EBESCT00000003069
EnsemblBacteria:EBESCT00000003070 EnsemblBacteria:EBESCT00000017754
GeneID:12930541 GeneID:948218 KEGG:ecj:Y75_p3472 KEGG:eco:b3701
PATRIC:32122899 EchoBASE:EB0238 EcoGene:EG10242 eggNOG:COG0592
HOGENOM:HOG000071791 KO:K02338 OMA:DYNRVIP ProtClustDB:PRK05643
BioCyc:EcoCyc:EG10242-MONOMER BioCyc:ECOL316407:JW3678-MONOMER
EvolutionaryTrace:P0A988 Genevestigator:P0A988 TIGRFAMs:TIGR00663
Uniprot:P0A988
Length = 366
Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 105/307 (34%), Positives = 172/307 (56%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQXXXXXXXXXXXXXXXDGKFLD 247
+ S S +I+PRK V L R+L+ +NP+ ++I +N DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKAS 307
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAE 303
Query: 308 ST-DLIY 313
D+ Y
Sbjct: 304 EILDVTY 310
>UNIPROTKB|Q9KVX5 [details] [associations]
symbol:dnaN "DNA polymerase III subunit beta"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR001001
InterPro:IPR022634 InterPro:IPR022635 InterPro:IPR022637
Pfam:PF00712 Pfam:PF02767 Pfam:PF02768 PIRSF:PIRSF000804
SMART:SM00480 GO:GO:0005737 GO:GO:0003677 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008408 GO:GO:0003887
GO:GO:0009360 eggNOG:COG0592 KO:K02338 OMA:DYNRVIP
ProtClustDB:PRK05643 TIGRFAMs:TIGR00663 PIR:F82376
RefSeq:NP_062597.1 ProteinModelPortal:Q9KVX5 SMR:Q9KVX5
DNASU:2615703 GeneID:2615703 KEGG:vch:VC0013 PATRIC:20079074
Uniprot:Q9KVX5
Length = 366
Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
Identities = 98/300 (32%), Positives = 172/300 (57%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQ-ITTYTAVGYGNS 66
E++ ++ PLQ V + + LPIL N+L+ ++S +TD EV+ I+ T G +
Sbjct: 6 ERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLEGEFEA 65
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSK 126
+I V ARKF+DI R LP++ +T+ +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 G-SITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPASDFPNIE-DWQ 123
Query: 127 YDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVN 186
+ + +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q
Sbjct: 124 SEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVAQAQ 183
Query: 187 IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQXXXXXXXXXXXXXXXDGKFL 246
+ F+ II+PRK V L +LL+ E PV L+I ++ DG+F
Sbjct: 184 LGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTSKLVDGRFP 242
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
DY+ V+ K+ +L ++ R +I+SN+K +GVR+ + N ++IT ++ +E+A
Sbjct: 243 DYRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNGMRITANNPEQEEA 302
>TIGR_CMR|VC_0013 [details] [associations]
symbol:VC_0013 "DNA polymerase III, beta chain" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR001001 InterPro:IPR022634
InterPro:IPR022635 InterPro:IPR022637 Pfam:PF00712 Pfam:PF02767
Pfam:PF02768 PIRSF:PIRSF000804 SMART:SM00480 GO:GO:0005737
GO:GO:0003677 GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0008408 GO:GO:0003887 GO:GO:0009360 eggNOG:COG0592 KO:K02338
OMA:DYNRVIP ProtClustDB:PRK05643 TIGRFAMs:TIGR00663 PIR:F82376
RefSeq:NP_062597.1 ProteinModelPortal:Q9KVX5 SMR:Q9KVX5
DNASU:2615703 GeneID:2615703 KEGG:vch:VC0013 PATRIC:20079074
Uniprot:Q9KVX5
Length = 366
Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
Identities = 98/300 (32%), Positives = 172/300 (57%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQ-ITTYTAVGYGNS 66
E++ ++ PLQ V + + LPIL N+L+ ++S +TD EV+ I+ T G +
Sbjct: 6 ERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLEGEFEA 65
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSK 126
+I V ARKF+DI R LP++ +T+ +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 G-SITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPASDFPNIE-DWQ 123
Query: 127 YDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVN 186
+ + +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q
Sbjct: 124 SEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVAQAQ 183
Query: 187 IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQXXXXXXXXXXXXXXXDGKFL 246
+ F+ II+PRK V L +LL+ E PV L+I ++ DG+F
Sbjct: 184 LGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTSKLVDGRFP 242
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
DY+ V+ K+ +L ++ R +I+SN+K +GVR+ + N ++IT ++ +E+A
Sbjct: 243 DYRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNGMRITANNPEQEEA 302
>TIGR_CMR|SPO_0150 [details] [associations]
symbol:SPO_0150 "DNA polymerase III, beta subunit"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR001001 InterPro:IPR022634
InterPro:IPR022635 InterPro:IPR022637 Pfam:PF00712 Pfam:PF02767
Pfam:PF02768 PIRSF:PIRSF000804 SMART:SM00480 GO:GO:0005737
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006260
GO:GO:0008408 GO:GO:0003887 GO:GO:0009360 HOGENOM:HOG000071791
KO:K02338 ProtClustDB:PRK05643 TIGRFAMs:TIGR00663 OMA:AINISYF
RefSeq:YP_165422.1 ProteinModelPortal:Q5LWV3 GeneID:3195527
KEGG:sil:SPO0150 PATRIC:23373547 Uniprot:Q5LWV3
Length = 372
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 77/302 (25%), Positives = 160/302 (52%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
++ E+ A+L + S+VE++N +PIL+N+L+ E F +TD ++++
Sbjct: 3 ISIERGALLKAVAQAQSVVERRNTIPILANVLIEAEGEGAQFRATDLDIEVVDKAPAMIE 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENK--HMFIKSGKSKFTLQTLDAKEYPIMT 122
+ V+A +I+R LP+ VT+ + + +++G+S F+L TL +++P+M
Sbjct: 63 RAGATT-VSATTLHEIVRKLPDGALVTLTADAAAGRLTVEAGRSNFSLATLPREDFPVMA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQK----KNIIAVSSDGH 178
+S+Y FT + L+ + + F+I+ ++ RYYLNG+ + K + V++DGH
Sbjct: 122 -SSEYQSNFTANAAVLRRLFDKSKFAISTEETRYYLNGVYMHVADGDGGKVLRCVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQXXXXXXXXXXXX 238
RL ++ + +I+PRKTV L++LL++ E + + +S +
Sbjct: 181 RLARIDADLPAGATDMPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKVRFATPDITLTS 240
Query: 239 XXXDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
DG F DY VI + V+ ++ +++ R++ +S+++ + V+L + + L ++V
Sbjct: 241 KVIDGTFPDYTRVIPQANTRRLEVDASEFAKAVDRVATVSSERSRAVKLQLDEDKLVLSV 300
Query: 299 SS 300
++
Sbjct: 301 NA 302
>TIGR_CMR|ECH_1009 [details] [associations]
symbol:ECH_1009 "DNA polymerase III, beta subunit"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001001 InterPro:IPR022634
InterPro:IPR022635 InterPro:IPR022637 Pfam:PF00712 Pfam:PF02767
Pfam:PF02768 PIRSF:PIRSF000804 SMART:SM00480 GO:GO:0005737
GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006260
GO:GO:0008408 GO:GO:0003887 GO:GO:0009360 eggNOG:COG0592
HOGENOM:HOG000071791 KO:K02338 OMA:DYNRVIP ProtClustDB:PRK05643
TIGRFAMs:TIGR00663 RefSeq:YP_507795.1 ProteinModelPortal:Q2GFI8
STRING:Q2GFI8 GeneID:3927321 KEGG:ech:ECH_1009 PATRIC:20577392
BioCyc:ECHA205920:GJNR-1012-MONOMER Uniprot:Q2GFI8
Length = 369
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 77/301 (25%), Positives = 160/301 (53%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
K+ +L L + SIVEK++ + +LS + + ++I STD ++ I + + N +
Sbjct: 7 KDKLLQALSYINSIVEKRHSIVVLSCVRIEARDQEIKLTSTDLDISIIA-SITAHVNVNG 65
Query: 69 NIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
++V+A+ DI++ LP ++ +I E+ + IK G+++F L +D +++PI+ N++
Sbjct: 66 VVVVSAQLLYDIVKKLPNDIEIKFFIGEDGRLTIKCGRTEFFLPVVDIEKFPIIE-NNEL 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+FTL L + F+I+ ++ R+ LNGL + + ++DGHRL+ +++
Sbjct: 125 QNKFTLQVSELVSLFGKTKFAISIEESRFNLNGLYVHTSNNILCCAATDGHRLSLTKLSQ 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENP--VELKISNNQXXXXXXXXXXXXXXXDGKF 245
+ S II+P+KTV + +++ + + + +S+ + DG F
Sbjct: 185 SQNVLSNFGIIVPKKTVNEILKIVSHGSGNDLISISLSDRKICFEYKEYILISKVIDGTF 244
Query: 246 LDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREK 305
DY +I ++K+ L+ L ++ R+S++ DK+K ++L N L ++ +SS++
Sbjct: 245 PDYNSIIPRSHDKNVLIESETLSNAIDRVSVVVFDKVKVIKLRFVSNKLILSAASSDQGD 304
Query: 306 A 306
A
Sbjct: 305 A 305
>TIGR_CMR|GSU_0001 [details] [associations]
symbol:GSU_0001 "DNA polymerase III, beta subunit"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001001 InterPro:IPR022634
InterPro:IPR022635 InterPro:IPR022637 Pfam:PF00712 Pfam:PF02767
Pfam:PF02768 PIRSF:PIRSF000804 SMART:SM00480 GO:GO:0005737
GO:GO:0003677 GO:GO:0006260 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0008408 GO:GO:0003887 GO:GO:0009360 HOGENOM:HOG000071791
KO:K02338 OMA:DYNRVIP ProtClustDB:PRK05643 TIGRFAMs:TIGR00663
RefSeq:NP_951063.1 ProteinModelPortal:Q74H91 GeneID:2686559
KEGG:gsu:GSU0001 PATRIC:22022739 BioCyc:GSUL243231:GH27-1-MONOMER
Uniprot:Q74H91
Length = 372
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 87/312 (27%), Positives = 165/312 (52%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQI-TTY-TAVGYGN 65
+++ LQ + IVEK+N +PILSN+L+ ++I +TD EV + ++Y T V
Sbjct: 6 DRDTFSRALQKIQGIVEKRNTMPILSNVLIEALEDRIELTATDLEVGMKSSYPTTVA--- 62
Query: 66 SSINIIVAARKFIDILRSLPETEKVTIYIE-NKHMFIKSGKSKFTLQTLDAKEYPIMTLN 124
S I V+A+K +I++ LP+ E ++ + N ++ I+ GK+KFT+ L ++E+P
Sbjct: 63 SQGKITVSAKKLYEIVKELPD-ETISFLTKANDYVEIRCGKAKFTIVGLSSEEFPYFPKV 121
Query: 125 SKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQK---KNIIA-VSSDGHRL 180
++ F + L ++ ++I + +Y LNG + + ++I+ V++DGHRL
Sbjct: 122 NEESF-IRIESGLLADMIEKTSYAICFDETKYNLNGTFVKASEEDGRSILRMVATDGHRL 180
Query: 181 TYYQVNIDKKFSS--CSDIIIPRKTVFTLQRLLENKENPVELKISNNQXXXXXXXXXXXX 238
+ Q + S +I P+K +F L+++ E + + L +N
Sbjct: 181 SITQREFNGAVSPEMAKGVIFPKKGIFELKKMCEEESTQLSLGFLDNSAVIVKGNTVVVM 240
Query: 239 XXXDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
DG+F DY V+ ++ V R+ SL+R+SI+S++K KG+++ I+ + + +
Sbjct: 241 RLVDGEFPDYTRVVPVANDRIVTVARDPFFHSLRRMSILSSEKFKGIKMDIQESGM--VI 298
Query: 299 SSSNREKASSTD 310
SSSN E +++
Sbjct: 299 SSSNPELGEASE 310
>TIGR_CMR|APH_1097 [details] [associations]
symbol:APH_1097 "DNA polymerase III, beta subunit"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR001001 InterPro:IPR022634
InterPro:IPR022635 InterPro:IPR022637 Pfam:PF00712 Pfam:PF02767
Pfam:PF02768 PIRSF:PIRSF000804 SMART:SM00480 GO:GO:0005737
GO:GO:0003677 GO:GO:0006260 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0008408 GO:GO:0003887 GO:GO:0009360 eggNOG:COG0592
HOGENOM:HOG000071791 KO:K02338 OMA:DYNRVIP ProtClustDB:PRK05643
TIGRFAMs:TIGR00663 RefSeq:YP_505645.1 ProteinModelPortal:Q2GJ06
STRING:Q2GJ06 GeneID:3931278 KEGG:aph:APH_1097 PATRIC:20950952
BioCyc:APHA212042:GHPM-1103-MONOMER Uniprot:Q2GJ06
Length = 375
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 73/300 (24%), Positives = 143/300 (47%)
Query: 12 ILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINII 71
+L L V S++E++N + +LS + + I F STD ++ I + +
Sbjct: 18 LLQALNYVSSVIERRNSIAVLSCVRIEAKGSVIEFTSTDLDISIEACVQANVATGGV-AV 76
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
+A+ DI+R L V + + + + G ++F L + +++P + S D F
Sbjct: 77 ASAQLLYDIVRKLSGEADVRFKLNDGKLLVACGNARFYLHVISPEKFPDIE-GSSLDCGF 135
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+ +L +LN FS++ ++ RY L G+ + + V++DGHRL+ +++ +
Sbjct: 136 DIPATSLAELLNKTKFSMSVEESRYNLRGVYFHVDDEMLCCVATDGHRLSLAKISKPEGL 195
Query: 192 SSCSDIIIPRKTVFTLQRLLEN----KENPVELKISNNQXXXXXXXXXXXXXXXDGKFLD 247
S +IIPRKTV + +++ + V + ISN + DG F D
Sbjct: 196 HSGIAVIIPRKTVNEVLKIIGHGGGDAAQMVSVGISNRKICFRYKGYFMVSKVLDGTFPD 255
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKAS 307
Y +I + S ++ + L ++ R+S++ DK+K ++L L ++ +SS++ AS
Sbjct: 256 YAAIIPTECGNSVSIDASVLQSAVDRVSVVVFDKVKAIKLSFTEGKLVLSSASSDQGDAS 315
>TIGR_CMR|BA_0002 [details] [associations]
symbol:BA_0002 "DNA polymerase III, beta subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001001 InterPro:IPR022634
InterPro:IPR022635 InterPro:IPR022637 Pfam:PF00712 Pfam:PF02767
Pfam:PF02768 PIRSF:PIRSF000804 SMART:SM00480 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0008408 GO:GO:0003887 GO:GO:0009360 KO:K02338
OMA:DYNRVIP ProtClustDB:PRK05643 TIGRFAMs:TIGR00663
HOGENOM:HOG000071792 RefSeq:NP_842574.1 RefSeq:YP_016605.1
RefSeq:YP_026293.1 ProteinModelPortal:Q81W34 DNASU:1083862
EnsemblBacteria:EBBACT00000008884 EnsemblBacteria:EBBACT00000013812
EnsemblBacteria:EBBACT00000022347 GeneID:1083862 GeneID:2815658
GeneID:2847981 KEGG:ban:BA_0002 KEGG:bar:GBAA_0002 KEGG:bat:BAS0002
BioCyc:BANT260799:GJAJ-2-MONOMER BioCyc:BANT261594:GJ7F-2-MONOMER
Uniprot:Q81W34
Length = 379
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 72/307 (23%), Positives = 147/307 (47%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
+K+ ++ +Q V+ V + +PIL+ I V E ++ +D ++ I ++ V
Sbjct: 6 QKDYLVRSVQDVMKAVSFRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVEEDGKE 65
Query: 68 I-------NIIVAARKFIDILRSLPETEKVTIYIENKHMFIK--SGKSKFTLQTLDAKEY 118
I +I++ A+ F +I++ LP+ E V I +EN H+ K SGKS+F L LD+ EY
Sbjct: 66 IVEVKQSGSIVLQAKYFSEIVKKLPK-ETVEISVEN-HLMTKITSGKSEFNLNGLDSAEY 123
Query: 119 PIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGH 178
P++ ++ F + LK ++ F+++ + R L G+ + +++D H
Sbjct: 124 PLLPQIEEHHV-FKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELTCIATDSH 182
Query: 179 RLTYYQVNIDKKFSSC-SDIIIPRKTVFTLQRLLENKENPVELKISNNQXXXXXXXXXXX 237
RL + I+ ++++IP K++ L ++L+ E V++ I+ Q
Sbjct: 183 RLALRKAKIEGIVDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFRTKHLLFF 242
Query: 238 XXXXDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKIT 297
+G + D +I + + VN + L+++ R S+++ D V + +
Sbjct: 243 SRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLSTLEQAMLE 302
Query: 298 VSSSNRE 304
+SS++ E
Sbjct: 303 ISSNSPE 309
>TIGR_CMR|NSE_0170 [details] [associations]
symbol:NSE_0170 "DNA polymerase III, beta subunit"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001001 InterPro:IPR022634
InterPro:IPR022635 InterPro:IPR022637 Pfam:PF00712 Pfam:PF02767
Pfam:PF02768 PIRSF:PIRSF000804 SMART:SM00480 GO:GO:0005737
GO:GO:0003677 GO:GO:0006260 GO:GO:0008408 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG0592 HOGENOM:HOG000071791 KO:K02338 ProtClustDB:PRK05643
TIGRFAMs:TIGR00663 RefSeq:YP_506066.1 ProteinModelPortal:Q2GEN0
STRING:Q2GEN0 GeneID:3931522 KEGG:nse:NSE_0170 PATRIC:22680439
OMA:AINISYF BioCyc:NSEN222891:GHFU-202-MONOMER Uniprot:Q2GEN0
Length = 372
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 74/303 (24%), Positives = 145/303 (47%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGY- 63
V +++A+ L ++S+ +K+ + LS++ V + +TD E+ +T + +G
Sbjct: 9 VTVQQDALTRILANLVSVSTRKSTIAYLSHVRVRFTGTSVELTTTDNELSLTD-SLLGIE 67
Query: 64 GNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTL 123
G I V A + +I++ LP V + IE ++ ++S + +F+L LDAK +P+++
Sbjct: 68 GVIDAVISVDAFRLYEIVKRLPTDVGVVLSIEKNNLVVRSRRIEFSLPYLDAKHFPLISE 127
Query: 124 NSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
K + + ++ + N V F+ + + R +LNG+ + I ++D HRL
Sbjct: 128 EEKIG-QINFAVDEIRSLFNKVRFATSTESTRQHLNGVYFESDGEKITVAATDVHRLAV- 185
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQXXXXXXXXXXXXXXXD- 242
+ KK IIP+KTV + +L KE VEL + +
Sbjct: 186 -ATLMKKTGLKFSCIIPKKTVLEMIKLSSGKE--VELFLHGREYVSRIKMVFGGVRLNSK 242
Query: 243 ---GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
G F ++ VI + ++ S +R L S++R+ ++S D+ + + + IK L + S
Sbjct: 243 LIAGTFPNFAAVIPHSFKSSLTFDRKALATSIERVGLVSPDQSRAISIGIKGKQLYLDAS 302
Query: 300 SSN 302
+S+
Sbjct: 303 NSD 305
>TIGR_CMR|CHY_2709 [details] [associations]
symbol:CHY_2709 "DNA polymerase III, beta subunit"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR001001
InterPro:IPR022634 InterPro:IPR022635 InterPro:IPR022637
Pfam:PF00712 Pfam:PF02767 Pfam:PF02768 PIRSF:PIRSF000804
SMART:SM00480 GO:GO:0005737 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006260 GO:GO:0008408 GO:GO:0003887
GO:GO:0009360 eggNOG:COG0592 KO:K02338 OMA:DYNRVIP
TIGRFAMs:TIGR00663 RefSeq:YP_361491.1 ProteinModelPortal:Q3A8P3
STRING:Q3A8P3 GeneID:3728811 KEGG:chy:CHY_2709 PATRIC:21278439
HOGENOM:HOG000071792 BioCyc:CHYD246194:GJCN-2707-MONOMER
Uniprot:Q3A8P3
Length = 371
Score = 241 (89.9 bits), Expect = 2.8e-20, P = 2.8e-20
Identities = 70/265 (26%), Positives = 128/265 (48%)
Query: 23 VEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFI-DIL 81
V K+ P+L+ IL N + + T T++Q++ T+ +V A KF+ DI+
Sbjct: 21 VSTKSPFPVLTGILFEANEQNSTITLTATDLQMSVETSFPAKIIEGGSVVLASKFLGDII 80
Query: 82 RSLPETEKVTIYIENK-HMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFE-FTLSQKTLK 139
+ LPETE + Y+ N+ IK G S+ ++ T +E+P D E F +S +
Sbjct: 81 KKLPETELMFEYLPNEGKCVIKYGASEVSVATYRPEEFP--KNEEVIDGESFYISGEEFS 138
Query: 140 CILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCS-DII 198
+ V F+ + R G+L + + V+SD HRL + + I ++ + + ++I
Sbjct: 139 TFIKQVLFATGTDESRPVFTGVLFEIVGQELRLVASDTHRLAFRKTFIKREDTGKNINVI 198
Query: 199 IPRKTVFTLQRLLENKENPVELKISNNQXXXXXXXXXXXXXXXDGKFLDYKYVISNKYEK 258
IP +T+ R+ + + +KIS Q +G+F +Y+ VI ++
Sbjct: 199 IPSRTLHEAVRIFGTVDELL-IKISEGQVEFSGNGIKLTSRLIEGQFPNYQQVIPTAFKS 257
Query: 259 SFLVNRNKLLRSLQRISIISNDKLK 283
+ L+N+ L SL+R +++ DK K
Sbjct: 258 NILINKKYFLDSLERAALLPRDKDK 282
>TIGR_CMR|BA_2684 [details] [associations]
symbol:BA_2684 "DNA polymerase III, beta subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001001 InterPro:IPR022634
InterPro:IPR022635 InterPro:IPR022637 Pfam:PF00712 Pfam:PF02767
Pfam:PF02768 PIRSF:PIRSF000804 SMART:SM00480 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0008408 GO:GO:0003887 GO:GO:0009360 KO:K02338
TIGRFAMs:TIGR00663 HOGENOM:HOG000071792 RefSeq:NP_845041.1
RefSeq:YP_019325.1 RefSeq:YP_028759.1 ProteinModelPortal:Q81PW0
DNASU:1084621 EnsemblBacteria:EBBACT00000011557
EnsemblBacteria:EBBACT00000013833 EnsemblBacteria:EBBACT00000019323
GeneID:1084621 GeneID:2817064 GeneID:2848911 KEGG:ban:BA_2684
KEGG:bar:GBAA_2684 KEGG:bat:BAS2499 OMA:DGHTEIQ
ProtClustDB:PRK06673 BioCyc:BANT260799:GJAJ-2564-MONOMER
BioCyc:BANT261594:GJ7F-2658-MONOMER Uniprot:Q81PW0
Length = 376
Score = 219 (82.2 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 68/322 (21%), Positives = 146/322 (45%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ +VN K+ L V + K I+PILS I + + I+ +++++ + I +
Sbjct: 1 MEFIVN-HKH-FTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIP 58
Query: 61 VGYGNSSIN-------IIVAARKFIDILRSLPETEKVTIYIENKHMF-IKSGKSKFTLQT 112
+ I I+V A+ FI+I++ +P + I +N+ I+SG+ L
Sbjct: 59 SAIDDEQITTILQAGTIVVPAKYFIEIIKKMPSD--IVIKSKNEQTITIQSGEITLNLNG 116
Query: 113 LDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIA 172
A E+P + + E + K L F++A+ + R+ L G+ + +I
Sbjct: 117 FPANEFPNVPQIDDHT-EIQIETKQLIDAFKQTVFAVAKNESRHVLTGVHIELDHNKLIC 175
Query: 173 VSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQXXXXXX 232
++D HRL + I + + I+P T+ L +L+ + V + +S +
Sbjct: 176 AATDSHRLAIRETLISTNMKA--NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTFG 233
Query: 233 XXXXXXXXXDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKG-VRL-VIK 290
+GK+ + +I N+++ ++R ++L+ + R S+++++ V L ++
Sbjct: 234 TTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIVN 293
Query: 291 PNYLKITVSSSNREKASSTDLI 312
+ ++I+ ++S K S I
Sbjct: 294 ESTIQISSNASQIGKISEKQQI 315
>TIGR_CMR|CJE_0002 [details] [associations]
symbol:CJE_0002 "DNA polymerase III, beta subunit"
species:195099 "Campylobacter jejuni RM1221" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001001 InterPro:IPR022634
InterPro:IPR022635 InterPro:IPR022637 Pfam:PF00712 Pfam:PF02767
Pfam:PF02768 PIRSF:PIRSF000804 SMART:SM00480 GO:GO:0005737
GO:GO:0003677 GO:GO:0006260 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0008408 GO:GO:0003887 GO:GO:0009360 eggNOG:COG0592 KO:K02338
OMA:DYNRVIP ProtClustDB:PRK05643 TIGRFAMs:TIGR00663
RefSeq:YP_178031.1 ProteinModelPortal:Q5HXF4 STRING:Q5HXF4
GeneID:3230658 KEGG:cjr:CJE0002 PATRIC:20041693
HOGENOM:HOG000100222 BioCyc:CJEJ195099:GJC0-2-MONOMER
Uniprot:Q5HXF4
Length = 355
Score = 207 (77.9 bits), Expect = 3.4e-15, P = 3.4e-15
Identities = 69/284 (24%), Positives = 129/284 (45%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L +N KN + + + + VEKK+ I S++ + +K+ ++D E+ I Y
Sbjct: 1 MKLSIN--KNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGIN-YKI 57
Query: 61 VGYGNSSINIIVA-ARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP 119
S A A+ D+++SL E V I+N +FI+ +K+ L + +++P
Sbjct: 58 KKIRVESSGFATANAKSIADVIKSLNNEEVVLETIDN-FLFIRQKSTKYKLPMFNHEDFP 116
Query: 120 IMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
N++ +F + L L + SI + +Y LNG L + I V +D R
Sbjct: 117 NFP-NTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTDKINFVGTDTKR 175
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQXXXXXXXXXXXXX 239
L Y ++K + IP+K + +Q+L K +E+ N
Sbjct: 176 LAIY--TLEKANNQEFSFSIPKKAIMEMQKLFYEK---IEIFYDQNMLIAKNENFEFFTK 230
Query: 240 XXDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLK 283
+ KF DY+ VI +++ + + SL++IS+++ +K+K
Sbjct: 231 LINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVT-EKMK 273
>TIGR_CMR|DET_1227 [details] [associations]
symbol:DET_1227 "DNA polymerase III, beta subunit"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001001 InterPro:IPR022634
InterPro:IPR022635 InterPro:IPR022637 Pfam:PF00712 Pfam:PF02767
Pfam:PF02768 PIRSF:PIRSF000804 SMART:SM00480 GO:GO:0005737
GO:GO:0003677 GO:GO:0006260 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0008408 GO:GO:0003887 GO:GO:0009360 eggNOG:COG0592 KO:K02338
OMA:DYNRVIP TIGRFAMs:TIGR00663 HOGENOM:HOG000071792
RefSeq:YP_181940.1 ProteinModelPortal:Q3Z759 STRING:Q3Z759
GeneID:3229498 KEGG:det:DET1227 PATRIC:21609487
ProtClustDB:CLSK935580 BioCyc:DETH243164:GJNF-1228-MONOMER
Uniprot:Q3Z759
Length = 378
Score = 201 (75.8 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 62/302 (20%), Positives = 136/302 (45%)
Query: 16 LQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAAR 75
L +V + LPI +N+L+ + ++ +T+ E+ I+ + + V A+
Sbjct: 14 LNIVGKAAAGRTTLPITNNVLISTDDGRLKLAATNLEMAISCWIGAKIEEEG-STTVPAK 72
Query: 76 KFIDILRSLPETE-KVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLS 134
+ + SLP + ++ + ++K + IK + + + +DAK++P + + ++
Sbjct: 73 LLTEFVSSLPNDKIELNLNAKSKALNIKCARFEARITGVDAKDFPPVP-KVENGISTKIN 131
Query: 135 QKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSC 194
+ + ++ V F+ A + R L G+ F+ + ++DG RL Y++ + + +
Sbjct: 132 VEAFRQAVSEVVFASATDESRPVLTGVNAEFEGSTLTLAAADGFRLAVYKLPLLEAVKTA 191
Query: 195 SDIIIPRKTVFTLQRLLENKENP---VELKISNNQXXXXXXXXXXXXXXXDGKFLDYKYV 251
+ +IIP +T+ L RL E + + + +Q G F Y +
Sbjct: 192 TKVIIPARTLGELSRLASMDEEEALMINVDTAKSQILFRLKNIELVSQLVQGNFPQYNQI 251
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKP--NYL--KITVSSSNREKAS 307
I + +V+ N+ L + + +I + D VRL++ P N K+T+S+ + E
Sbjct: 252 IPQSFTTKVVVDANQFLMATRTATIFARDGGGIVRLMMNPGGNNTPGKLTISARSEEVGD 311
Query: 308 ST 309
+T
Sbjct: 312 NT 313
>UNIPROTKB|Q50790 [details] [associations]
symbol:dnaN "DNA polymerase III subunit beta" species:1773
"Mycobacterium tuberculosis" [GO:0005576 "extracellular region"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA]
InterPro:IPR001001 InterPro:IPR022634 InterPro:IPR022635
InterPro:IPR022637 Pfam:PF00712 Pfam:PF02767 Pfam:PF02768
PIRSF:PIRSF000804 SMART:SM00480 GO:GO:0005737 GO:GO:0005618
GO:GO:0005576 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0006260 EMBL:BX842572
GO:GO:0008408 GO:GO:0003887 EMBL:X92504 GO:GO:0009360
eggNOG:COG0592 KO:K02338 OMA:DYNRVIP TIGRFAMs:TIGR00663 PIR:F70850
RefSeq:NP_214516.1 RefSeq:NP_334411.1 RefSeq:YP_006513314.1
PDB:3P16 PDB:3RB9 PDBsum:3P16 PDBsum:3RB9 ProteinModelPortal:Q50790
SMR:Q50790 PRIDE:Q50790 EnsemblBacteria:EBMYCT00000000149
EnsemblBacteria:EBMYCT00000071477 GeneID:13315975 GeneID:887092
GeneID:922430 KEGG:mtc:MT0002 KEGG:mtu:Rv0002 KEGG:mtv:RVBD_0002
PATRIC:18121728 TubercuList:Rv0002 HOGENOM:HOG000071793
ProtClustDB:PRK07761 EvolutionaryTrace:Q50790 Uniprot:Q50790
Length = 402
Score = 124 (48.7 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 35/177 (19%), Positives = 81/177 (45%)
Query: 29 LPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLPETE 88
+P+LS +L+ + ++ D EV + +++V+ R DI R+LP +
Sbjct: 39 VPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIVSPG-SVLVSGRLLSDITRALPN-K 96
Query: 89 KVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFS 148
V +++E + + G ++F+L T+ ++YP TL + + L + ++ V +
Sbjct: 97 PVDVHVEGNRVALTCGNARFSLPTMPVEDYP--TLPTLPEETGLLPAELFAEAISQVAIA 154
Query: 149 IAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSC-SDIIIPRKTV 204
+ D L G+ + + ++ ++D RL ++ + +++P KT+
Sbjct: 155 AGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVRELKWSASSPDIEAAVLVPAKTL 211
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.364 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 314 299 0.00095 115 3 11 22 0.38 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 16
No. of states in DFA: 570 (61 KB)
Total size of DFA: 168 KB (2100 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:02
No. of threads or processors used: 24
Search cpu time: 23.65u 0.08s 23.73t Elapsed: 00:00:16
Total cpu time: 23.66u 0.08s 23.74t Elapsed: 00:00:18
Start: Thu Aug 15 13:08:22 2013 End: Thu Aug 15 13:08:40 2013