RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13355
(314 letters)
>d1ok7a1 d.131.1.1 (A:1-122) DNA polymerase III, beta subunit
{Escherichia coli [TaxId: 562]}
Length = 122
Score = 91.1 bits (226), Expect = 2e-23
Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ V + +L PLQ V + + LPIL N+L+ +S TD E+++ A
Sbjct: 1 MKFTVE--REHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVA 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P
Sbjct: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118
Query: 121 M 121
+
Sbjct: 119 L 119
Score = 25.3 bits (55), Expect = 6.3
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 260 FLVNRNKLLRSLQRISIISNDK-----LKGVRLVIKPNYLKITVSSSNREKASSTDLIYH 314
F V R LL+ LQ++S + L + L + L +T + E + L+
Sbjct: 3 FTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQP 62
>d1ok7a2 d.131.1.1 (A:123-244) DNA polymerase III, beta subunit
{Escherichia coli [TaxId: 562]}
Length = 122
Score = 86.7 bits (214), Expect = 7e-22
Identities = 42/123 (34%), Positives = 70/123 (56%), Gaps = 1/123 (0%)
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
+ + EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL +
Sbjct: 1 QSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSM 60
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKF 245
I + S S I+ + + ++ L P+ ++I +N I+ + SKL+DG+F
Sbjct: 61 PIGQSLPSHSVIVPRKGVIELMRMLDGGDN-PLRVQIGSNNIRAHVGDFIFTSKLVDGRF 119
Query: 246 LDY 248
DY
Sbjct: 120 PDY 122
>d1vpka2 d.131.1.1 (A:121-243) DNA polymerase III, beta subunit
{Thermotoga maritima [TaxId: 2336]}
Length = 123
Score = 85.2 bits (210), Expect = 3e-21
Identities = 26/125 (20%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 125 SKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQ 184
++ F + L+ ++ V F+ A+ + LNG+ K + V+SDG RL +
Sbjct: 1 AESGITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRLVASDGFRLALAE 60
Query: 185 VNIDKKFSSCSDIIIPRKTVFTLQRLLENKENP-VELKISNNQIKIIFSNIEIISKLIDG 243
I+ + + ++ K++ +Q +L+N P + ++ ++ + +++E + +++D
Sbjct: 61 EQIENEEE--ASFLLSLKSMKEVQNVLDNTTEPTITVRYDGRRVSLSTNDVETVMRVVDA 118
Query: 244 KFLDY 248
+F DY
Sbjct: 119 EFPDY 123
>d1vpka1 d.131.1.1 (A:1-120) DNA polymerase III, beta subunit
{Thermotoga maritima [TaxId: 2336]}
Length = 120
Score = 81.6 bits (201), Expect = 5e-20
Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 3/122 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M++ V + + + + KK++ PIL+ L +TD E +
Sbjct: 1 MKVTVT--TLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVN 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ +V +++ LP+ E + +E + I SG + F + T+ A E+P
Sbjct: 59 AAEISGEARFVVPGDVIQKMVKVLPD-EITELSLEGDALVISSGSTVFRITTMPADEFPE 117
Query: 121 MT 122
+T
Sbjct: 118 IT 119
>d1ok7a3 d.131.1.1 (A:245-366) DNA polymerase III, beta subunit
{Escherichia coli [TaxId: 562]}
Length = 122
Score = 38.0 bits (88), Expect = 2e-04
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 251 VISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREK 305
V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+
Sbjct: 3 VLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEE 57
>d1vpka3 d.131.1.1 (A:244-366) DNA polymerase III, beta subunit
{Thermotoga maritima [TaxId: 2336]}
Length = 123
Score = 37.3 bits (86), Expect = 4e-04
Identities = 14/61 (22%), Positives = 32/61 (52%)
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASS 308
K VI ++ +V+R +L SL+R+ +I++ + V+ I+ N +++ S + +
Sbjct: 1 KRVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMRLVSKSPDYGEVVD 60
Query: 309 T 309
Sbjct: 61 E 61
>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide
dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId:
9913]}
Length = 336
Score = 26.3 bits (56), Expect = 4.6
Identities = 15/181 (8%), Positives = 45/181 (24%), Gaps = 2/181 (1%)
Query: 76 KFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQ 135
K ++ + + + F + + + F
Sbjct: 105 KVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVD 164
Query: 136 KTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCS 195
+ ++ QD+ + L ++ + + + S
Sbjct: 165 PQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKS 224
Query: 196 DIIIPRKTVFTLQRLLEN--KENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVIS 253
+ P + L + ++ II N +++ +G+ K +I
Sbjct: 225 PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLIC 284
Query: 254 N 254
+
Sbjct: 285 D 285
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId:
10090]}
Length = 208
Score = 25.9 bits (56), Expect = 6.8
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 201 RKTVFTLQRLLENKENPVELKISNNQIKIIFSNIE 235
K TL + ++ P++ + ++ IF NIE
Sbjct: 40 EKYTDTLGSIQQHFMKPLQRFLKPQDMETIFVNIE 74
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 25.8 bits (55), Expect = 6.9
Identities = 7/29 (24%), Positives = 20/29 (68%)
Query: 3 LVVNTEKNAILHPLQMVISIVEKKNILPI 31
LV+ T+ + +Q V+ ++++++I+P+
Sbjct: 167 LVLKTDSCDVNDCVQQVVELLQERDIVPV 195
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.364
Gapped
Lambda K H
0.267 0.0665 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,079,060
Number of extensions: 49761
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 36
Length of query: 314
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,240,546
Effective search space: 284085034
Effective search space used: 284085034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)