BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13357
(833 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EI1|A Chain A, Dimerization Of E. Coli Dna Gyrase B Provides A Structural
Mechanism For Activating The Atpase Catalytic Center
pdb|1EI1|B Chain B, Dimerization Of E. Coli Dna Gyrase B Provides A Structural
Mechanism For Activating The Atpase Catalytic Center
Length = 391
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/384 (47%), Positives = 250/384 (65%), Gaps = 22/384 (5%)
Query: 24 IQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYXXXXX 83
I++L+GL+AVRKRP MYIGDT DGTGLHH+VFE++DNAIDE+LAG+C +I VTI+
Sbjct: 9 IKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSV 68
Query: 84 XXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNG 143
GRG SAAE++MT LHAGGKF+ NSYK+SGGLHG+G+S VN
Sbjct: 69 SVQDDGRGIPTGIHPEEGV----SAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNA 124
Query: 144 LSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDE 203
LS+ L+L I R KIH + +GV Q +P+ + G+T K GT + FW
Sbjct: 125 LSQKLELVIQREGKIHRQIYEHGVPQ------------APLAVTGETEKTGTMVRFWPSL 172
Query: 204 KIFSNI-EFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSGFVSYINKSK 262
+ F+N+ EF YEIL KR+RELSFL++GV I L D+R FV Y+NK+K
Sbjct: 173 ETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNK 232
Query: 263 LVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSG 322
+HP IF +V++QWN+ + ENI CFTNNI Q DGGTHL G R+
Sbjct: 233 TPIHPNIF-----YFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAA 287
Query: 323 ITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKP 382
+TR +N Y+++ + KK+K+ G+D REGL V+S+K+PDPKF+SQTK+KLVSSEV+
Sbjct: 288 MTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSA 347
Query: 383 VEEIIIKTLFDFLQENPGESKLIC 406
VE+ + + L ++L ENP ++K++
Sbjct: 348 VEQQMNELLAEYLLENPTDAKIVV 371
>pdb|3NUH|B Chain B, A Domain Insertion In E. Coli Gyrb Adopts A Novel Fold
That Plays A Critical Role In Gyrase Function
Length = 420
Score = 304 bits (779), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 166/417 (39%), Positives = 238/417 (57%), Gaps = 13/417 (3%)
Query: 426 TRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVL 485
TR+K +D L KLADCQE++P L ELY+VEGDSAGGS KQGR+R+ QA+LPL+GK+L
Sbjct: 8 TRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKIL 67
Query: 486 NIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLL 545
N+EKARF+K + S++ +DE+N +KLRYH III TDAD+DG+HIR LLL
Sbjct: 68 NVEKARFDKXLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIXTDADVDGSHIRTLLL 127
Query: 546 TFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIEN 605
TFFYR+ P+++E G++YIAQPPLYK+K G E Y++DD ++Y + IA L + +
Sbjct: 128 TFFYRQXPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAXDQYQISIALDGATLHTNAS 187
Query: 606 GDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVIL---NLDTRENAEQFAK 662
+ KL+ +YN T + ++R ++ + L ++ L +L + ++
Sbjct: 188 APALAGEALEKLVSEYNATQKXINRXERRYPKAXLKELIYQPTLTEADLSDEQTVTRWVN 247
Query: 663 KIIKKLNDSNIE-IIVEFD-----QXXXXXXXXXXXXXXXXXXXXXDINFINNKDYKKLV 716
++ +LND +FD + D FI +Y++
Sbjct: 248 ALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRR-- 305
Query: 717 SIISTFXXXXXXXXXXXXXXXEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNP 776
I T ++ +F + +++L E+ + QRYKGLGE NP
Sbjct: 306 --ICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEXNP 363
Query: 777 GQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 833
QLWETT +P R L+V +KDAI+AD++F TL GD VE RR FIE NAL A NIDI
Sbjct: 364 EQLWETTXDPESRRXLRVTVKDAIAADQLFTTLXGDAVEPRRAFIEENALKAANIDI 420
>pdb|1KIJ|A Chain A, Crystal Structure Of The 43k Atpase Domain Of Thermus
Thermophilus Gyrase B In Complex With Novobiocin
pdb|1KIJ|B Chain B, Crystal Structure Of The 43k Atpase Domain Of Thermus
Thermophilus Gyrase B In Complex With Novobiocin
Length = 390
Score = 229 bits (584), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 129/384 (33%), Positives = 200/384 (52%), Gaps = 24/384 (6%)
Query: 18 SYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTI 77
SY AS+I++L+GLE VR RP MYIG T G HHL EILDNA+DE+LAGY T+I V +
Sbjct: 2 SYDASAIRVLKGLEGVRHRPAMYIGGTGV-EGYHHLFKEILDNAVDEALAGYATEILVRL 60
Query: 78 YXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIG 137
GRG + A E++ LH+GGKF + +YK+SGGLHG+G
Sbjct: 61 NEDGSLTVEDNGRGIPVDLMPEEG----KPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVG 116
Query: 138 LSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDT--NKQGT 195
S VN LS + + + R K H + F G + P++++G+ K GT
Sbjct: 117 ASVVNALSEWTVVEVFREGKHHRIAFSRGEV------------TEPLRVVGEAPRGKTGT 164
Query: 196 KIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSGFV 255
++ F D +IF N+ F ++ R+RE+++L G+ + D + + F
Sbjct: 165 RVTFKPDPEIFGNLRFDPSKIRARLREVAYLVAGLKLVFQDRQHGKEEVFLDKGGVASFA 224
Query: 256 SYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNNSYNENILCFTNNILQVDGGTH 315
+ + + +++ F +V YN IL + N I DGGTH
Sbjct: 225 KALAEGEDLLYEKPF-----LIRGTHGEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTH 279
Query: 316 LTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLV 375
LT +S +RA+N+Y ++ K+ + G+D+ EGL V+S+K+P+P+F QTK KL+
Sbjct: 280 LTAFKSAYSRALNQYAKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLL 339
Query: 376 SSEVRKPVEEIIIKTLFDFLQENP 399
+ E V +++ + L + L+ENP
Sbjct: 340 NPEAGTAVGQVVYERLLEILEENP 363
>pdb|4DUH|A Chain A, Crystal Structure Of 24 Kda Domain Of E. Coli Dna Gyrase B
In Complex With Small Molecule Inhibitor
pdb|4DUH|B Chain B, Crystal Structure Of 24 Kda Domain Of E. Coli Dna Gyrase B
In Complex With Small Molecule Inhibitor
Length = 220
Score = 227 bits (578), Expect = 2e-59, Method: Composition-based stats.
Identities = 117/223 (52%), Positives = 151/223 (67%), Gaps = 17/223 (7%)
Query: 17 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVT 76
+SY +SSI++L+GL+AVRKRP MYIGDT DGTGLHH+VFE++DNAIDE+LAG+C +I VT
Sbjct: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62
Query: 77 IYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGI 136
I+ GRG SAAE++MT LHAGGKF+ NSYK+SGGLHG+
Sbjct: 63 IHADNSVSVQDDGRGIPTGIHPEEGV----SAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 118
Query: 137 GLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTK 196
G+S VN LS+ L+L I R KIH + +GV Q +P+ + G+T K GT
Sbjct: 119 GVSVVNALSQKLELVIQREGKIHRQIYEHGVPQ------------APLAVTGETEKTGTM 166
Query: 197 IHFWVDEKIFSNI-EFHYEILKKRIRELSFLNNGVCITLIDER 238
+ FW + F+N+ EF YEIL KR+RELSFLN+GV I L D+R
Sbjct: 167 VRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKR 209
>pdb|1AJ6|A Chain A, Novobiocin-resistant Mutant (r136h) Of The N-terminal 24
Kda Fragment Of Dna Gyrase B Complexed With Novobiocin
At 2.3 Angstroms Resolution
Length = 219
Score = 225 bits (574), Expect = 7e-59, Method: Composition-based stats.
Identities = 116/223 (52%), Positives = 150/223 (67%), Gaps = 17/223 (7%)
Query: 17 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVT 76
+SY +SSI++L+GL+AVRKRP MYIGDT DGTGLHH+VFE++DNAIDE+LAG+C +I VT
Sbjct: 2 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 61
Query: 77 IYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGI 136
I+ GRG SAAE++MT LHAGGKF+ NSYK+SGGLHG+
Sbjct: 62 IHADNSVSVQDDGRGIPTGIHPEEGV----SAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 117
Query: 137 GLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTK 196
G+S VN LS+ L+L I KIH + +GV Q +P+ + G+T K GT
Sbjct: 118 GVSVVNALSQKLELVIQHEGKIHRQIYEHGVPQ------------APLAVTGETEKTGTM 165
Query: 197 IHFWVDEKIFSNI-EFHYEILKKRIRELSFLNNGVCITLIDER 238
+ FW + F+N+ EF YEIL KR+RELSFLN+GV I L D+R
Sbjct: 166 VRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKR 208
>pdb|3G7E|A Chain A, Crystal Structure Of E. Coli Gyrase B Co-Complexed With
Inhibitor
Length = 203
Score = 215 bits (548), Expect = 6e-56, Method: Composition-based stats.
Identities = 111/211 (52%), Positives = 140/211 (66%), Gaps = 17/211 (8%)
Query: 29 GLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYXXXXXXXXXX 88
GL+AVRKRP MYIGDT DGTGLHH+VFE++DNAIDE+LAG+C +I VTI+
Sbjct: 1 GLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDD 60
Query: 89 GRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFL 148
GRG SAAE++MT LHAGGKF+ NSYK+SGGLHG+G+S VN LS+ L
Sbjct: 61 GRGIPTGIHPEEGV----SAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKL 116
Query: 149 QLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSN 208
+L I R KIH + +GV Q +P+ + G+T K GT + FW + F+N
Sbjct: 117 ELVIQREGKIHRQIYEHGVPQ------------APLAVTGETEKTGTMVRFWPSLETFTN 164
Query: 209 I-EFHYEILKKRIRELSFLNNGVCITLIDER 238
+ EF YEIL KR+RELSFLN+GV I L D+R
Sbjct: 165 VTEFEYEILAKRLRELSFLNSGVSIRLRDKR 195
>pdb|4HYP|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HYP|B Chain B, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HYP|C Chain C, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HYP|D Chain D, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
Length = 215
Score = 215 bits (547), Expect = 9e-56, Method: Composition-based stats.
Identities = 111/211 (52%), Positives = 140/211 (66%), Gaps = 17/211 (8%)
Query: 29 GLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYXXXXXXXXXX 88
GL+AVRKRP MYIGDT DGTGLHH+VFE++DNAIDE+LAG+C +I VTI+
Sbjct: 2 GLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDD 61
Query: 89 GRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFL 148
GRG SAAE++MT LHAGGKF+ NSYK+SGGLHG+G+S VN LS+ L
Sbjct: 62 GRGIPTGIHPEEGV----SAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKL 117
Query: 149 QLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSN 208
+L I R KIH + +GV Q +P+ + G+T K GT + FW + F+N
Sbjct: 118 ELVIQREGKIHRQIYEHGVPQ------------APLAVTGETEKTGTMVRFWPSLETFTN 165
Query: 209 I-EFHYEILKKRIRELSFLNNGVCITLIDER 238
+ EF YEIL KR+RELSFLN+GV I L D+R
Sbjct: 166 VTEFEYEILAKRLRELSFLNSGVSIRLRDKR 196
>pdb|1KZN|A Chain A, Crystal Structure Of E. Coli 24kda Domain In Complex With
Clorobiocin
Length = 205
Score = 215 bits (547), Expect = 9e-56, Method: Composition-based stats.
Identities = 111/211 (52%), Positives = 140/211 (66%), Gaps = 17/211 (8%)
Query: 29 GLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYXXXXXXXXXX 88
GL+AVRKRP MYIGDT DGTGLHH+VFE++DNAIDE+LAG+C +I VTI+
Sbjct: 1 GLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDD 60
Query: 89 GRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFL 148
GRG SAAE++MT LHAGGKF+ NSYK+SGGLHG+G+S VN LS+ L
Sbjct: 61 GRGIPTGIHPEEGV----SAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKL 116
Query: 149 QLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSN 208
+L I R KIH + +GV Q +P+ + G+T K GT + FW + F+N
Sbjct: 117 ELVIQREGKIHRQIYEHGVPQ------------APLAVTGETEKTGTMVRFWPSLETFTN 164
Query: 209 I-EFHYEILKKRIRELSFLNNGVCITLIDER 238
+ EF YEIL KR+RELSFLN+GV I L D+R
Sbjct: 165 VTEFEYEILAKRLRELSFLNSGVSIRLRDKR 195
>pdb|3LNU|A Chain A, Crystal Structure Of Pare Subunit
pdb|3LPS|A Chain A, Crystal Structure Of Pare
Length = 408
Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 189/387 (48%), Gaps = 28/387 (7%)
Query: 14 TQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKI 73
+ + Y+A+ I++L GL+ V++RP MY +D +HL E++DN++DE+LAG+ +I
Sbjct: 19 SHNTRYNAADIEVLSGLDPVKRRPGMY----TDTARPNHLAQEVIDNSVDEALAGHAKQI 74
Query: 74 NVTIYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGL 133
VT+Y GRG E+++T LHAGGKFN +Y SGGL
Sbjct: 75 EVTLYKDGSCEVSDDGRGMPVDIHPEEKI----PGVELILTRLHAGGKFNNRNYTFSGGL 130
Query: 134 HGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQ 193
HG+G+S VN LS ++L I R H MEFR +G + S ++++G K+
Sbjct: 131 HGVGVSVVNALSTKVELFIKREGSEHRMEFR------------DGNAASKLEVVGTVGKK 178
Query: 194 --GTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXT 251
GT++ FW D K F +F+ L+ +R + L G+ + L DE
Sbjct: 179 NTGTRLRFWADPKYFDTPKFNVRALRHLLRAKAVLCPGLTVKLHDE---ATGEQDSWYFE 235
Query: 252 SGFVSYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNNSYNENILCFTNNILQVD 311
+G Y+ K ++ H + A D + W + N I
Sbjct: 236 NGLRDYL-KGEMAEH-EMLPADLFVGSLKKDTEIVDWAAGWVPEGELVQESYVNLIPTAQ 293
Query: 312 GGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTK 371
GTH+ GLRSG+T A+ ++ + L + +++ ED+ + +T VLS+K+ DP+F+ QTK
Sbjct: 294 HGTHVNGLRSGLTDALREFCDFRNLLPRG-VKLAPEDVWDRVTFVLSLKMTDPQFSGQTK 352
Query: 372 NKLVSSEVRKPVEEIIIKTLFDFLQEN 398
+L S + +E +L +N
Sbjct: 353 ERLSSRQAAGFIEGAAHDAFSLYLNQN 379
>pdb|2XCO|A Chain A, The 3.1a Crystal Structure Of The Catalytic Core (B'a'
Region) Of Staphylococcus Aureus Dna Gyrase
pdb|2XCQ|A Chain A, The 2.98a Crystal Structure Of The Catalytic Core (B'a'
Region) Of Staphylococcus Aureus Dna Gyrase
Length = 726
Score = 184 bits (467), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 88/154 (57%), Positives = 110/154 (71%), Gaps = 1/154 (0%)
Query: 432 IDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKAR 491
+D L KLADC K+PE CE+++VEGDSAGGS K GRD R QA+LPLRGK+LN+EKAR
Sbjct: 1 MDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKAR 60
Query: 492 FEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRK 551
++I+ + + D F+L K RYH+I+IMTDAD+DGAHIR LLLTFFYR
Sbjct: 61 LDRILNNNEIRQMITAFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRF 119
Query: 552 MPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIE 585
M LIE GY+YIAQPPLYK+ G + Y+ +D E
Sbjct: 120 MRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 153
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 767 RYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNAL 826
RYKGLGEMN QLWETTMNP R LL+VK++DAI AD+ F LMGD VE RR+FIE NA+
Sbjct: 171 RYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAV 230
Query: 827 HAKNID 832
+A N+D
Sbjct: 231 YA-NLD 235
>pdb|2XCR|B Chain B, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
Region) Of Staphylococcus Aureus Dna Gyrase Complexed
With Gsk299423 And Dna
pdb|2XCR|D Chain D, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
Region) Of Staphylococcus Aureus Dna Gyrase Complexed
With Gsk299423 And Dna
pdb|2XCR|S Chain S, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
Region) Of Staphylococcus Aureus Dna Gyrase Complexed
With Gsk299423 And Dna
pdb|2XCR|U Chain U, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
Region) Of Staphylococcus Aureus Dna Gyrase Complexed
With Gsk299423 And Dna
Length = 726
Score = 184 bits (467), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 88/154 (57%), Positives = 110/154 (71%), Gaps = 1/154 (0%)
Query: 432 IDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKAR 491
+D L KLADC K+PE CE+++VEGDSAGGS K GRD R QA+LPLRGK+LN+EKAR
Sbjct: 1 MDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKAR 60
Query: 492 FEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRK 551
++I+ + + D F+L K RYH+I+IMTDAD+DGAHIR LLLTFFYR
Sbjct: 61 LDRILNNNEIRQMITAFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRF 119
Query: 552 MPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIE 585
M LIE GY+YIAQPPLYK+ G + Y+ +D E
Sbjct: 120 MRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE 153
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 767 RYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNAL 826
RYKGLGEMN QLWETTMNP R LL+VK++DAI AD+ F LMGD VE RR+FIE NA+
Sbjct: 171 RYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAV 230
Query: 827 HAKNID 832
+A N+D
Sbjct: 231 YA-NLD 235
>pdb|4HXZ|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HXZ|B Chain B, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HY1|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HY1|B Chain B, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HYM|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HYM|B Chain B, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
Length = 390
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 125/393 (31%), Positives = 196/393 (49%), Gaps = 31/393 (7%)
Query: 18 SYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTI 77
+Y+A SI++L GL+ V+KRP MY ++ +HL+ EI+DN++DE LAG+ +KIN+T+
Sbjct: 3 NYNAKSIEVLTGLDPVKKRPGMY----TNIENPNHLIQEIIDNSVDEVLAGFASKINITL 58
Query: 78 YXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIG 137
Y GRG S E++MT+LH+GGKF+ +Y SGGLHG+G
Sbjct: 59 YEDNSIEVADDGRGMPVDIHPEHKM----SGIELIMTKLHSGGKFSNKNYTHSGGLHGVG 114
Query: 138 LSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQ--GT 195
+S VN LS L+ I R+ ++++ F +G ++II + K+ GT
Sbjct: 115 VSVVNALSTRLEAEIKRDGNVYHIVFE------------DGFKTKDLEIIDNVGKKNTGT 162
Query: 196 KIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSGFV 255
KI FW ++K F +I+ +++ LK + + L + I +E G++
Sbjct: 163 KIRFWPNKKYFDDIKVNFKALKNLLEAKAILCKALTIKYSNEIKKEKLTWHFETGLKGYL 222
Query: 256 SY-INKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNNSYNENIL-CFTNNILQVDGG 313
+ + L P I D W +E+I + N I G
Sbjct: 223 DHKLEAETLPAEPFIID------NFSNGDSYLDAVFCWCEDPSESIKNSYVNLIPTPQDG 276
Query: 314 THLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNK 373
TH+TGL++GI AI YIE+N K+ I+I D L V+S+KI +P+F QTK K
Sbjct: 277 THVTGLKNGIYDAIKAYIEKNSLSVKN-IKITANDSFAQLNYVISVKITNPQFAGQTKEK 335
Query: 374 LVSSEVRKPVEEIIIKTLFDFLQENPGESKLIC 406
L + +V V + L +L +NP E++ I
Sbjct: 336 LSNKDVTNFVATAVKDLLTIWLNQNPDEARQIV 368
>pdb|1S16|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv Pare 43kda
Subunit Complexed With Adpnp
pdb|1S16|B Chain B, Crystal Structure Of E. Coli Topoisomerase Iv Pare 43kda
Subunit Complexed With Adpnp
Length = 390
Score = 175 bits (443), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 114/392 (29%), Positives = 194/392 (49%), Gaps = 29/392 (7%)
Query: 18 SYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTI 77
+Y+A +I++L GLE VR+RP MY +D T +HL E++DN++DE+LAG+ +++V +
Sbjct: 4 TYNADAIEVLTGLEPVRRRPGMY----TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVIL 59
Query: 78 YXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIG 137
+ GRG A E+++ LHAGGKF+ +Y+ SGGLHG+G
Sbjct: 60 HADQSLEVIDDGRGMPVDIHPEEGV----PAVELILCRLHAGGKFSNKNYQFSGGLHGVG 115
Query: 138 LSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQ--GT 195
+S VN LS+ +++ + R+ +++ + F NG V ++++G K+ GT
Sbjct: 116 ISVVNALSKRVEVNVRRDGQVYNIAFE------------NGEKVQDLQVVGTCGKRNTGT 163
Query: 196 KIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSGFV 255
+HFW DE F + F L ++ + L GV IT DE G
Sbjct: 164 SVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDE---INNTEQRWCYQDGLN 220
Query: 256 SYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNNSYNENIL-CFTNNILQVDGGT 314
Y+ ++ + PT+ + D ++ W E + + N I + GGT
Sbjct: 221 DYLAEAVNGL-PTLPE-KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGT 278
Query: 315 HLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKL 374
H+ GLR G+ A+ ++ E L + +++ EDI + VLS+K+ DP+F QTK +L
Sbjct: 279 HVNGLRQGLLDAMREFCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERL 337
Query: 375 VSSEVRKPVEEIIIKTLFDFLQENPGESKLIC 406
S + V ++ +L +N ++L+
Sbjct: 338 SSRQCAAFVSGVVKDAFILWLNQNVQAAELLA 369
>pdb|2XCS|B Chain B, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex
With Gsk299423 And Dna
pdb|2XCS|D Chain D, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex
With Gsk299423 And Dna
pdb|2XCT|B Chain B, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
With Ciprofloxacin And Dna
pdb|2XCT|D Chain D, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
With Ciprofloxacin And Dna
pdb|2XCT|S Chain S, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
With Ciprofloxacin And Dna
pdb|2XCT|U Chain U, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
With Ciprofloxacin And Dna
Length = 692
Score = 172 bits (435), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 81/136 (59%), Positives = 99/136 (72%), Gaps = 1/136 (0%)
Query: 432 IDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKAR 491
+D L KLADC K+PE CE+++VEGDSAGGS K GRD R QA+LPLRGK+LN+EKAR
Sbjct: 1 MDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKAR 60
Query: 492 FEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRK 551
++I+ + + D F+L K RYH+I+IMTDAD+DGAHIR LLLTFFYR
Sbjct: 61 LDRILNNNEIRQMITAFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRF 119
Query: 552 MPKLIEYGYIYIAQPP 567
M LIE GY+YIAQPP
Sbjct: 120 MRPLIEAGYVYIAQPP 135
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 62/88 (70%), Gaps = 5/88 (5%)
Query: 748 FYKIINYLRNEAENMVIKQR---YKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADK 804
FY+ + L EA + I Q YKGLGEMN QLWETTMNP R LL+VK++DAI AD+
Sbjct: 116 FYRFMRPL-IEAGYVYIAQPPTGYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQ 174
Query: 805 IFMTLMGDNVELRRKFIELNALHAKNID 832
F LMGD VE RR+FIE NA++A N+D
Sbjct: 175 TFEMLMGDVVENRRQFIEDNAVYA-NLD 201
>pdb|4HZ5|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|B Chain B, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|C Chain C, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|D Chain D, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|E Chain E, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|F Chain F, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|G Chain G, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|H Chain H, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|J Chain J, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
Length = 216
Score = 170 bits (431), Expect = 2e-42, Method: Composition-based stats.
Identities = 102/212 (48%), Positives = 125/212 (58%), Gaps = 20/212 (9%)
Query: 29 GLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYXXXXXXXXXX 88
GLEAVRKRP MYIG T D GLHHLV+EI+DNA+DE+L+GY +INVTI
Sbjct: 2 GLEAVRKRPGMYIGST-DSRGLHHLVYEIVDNAVDEALSGYGNEINVTIQKDNSICVADS 60
Query: 89 GRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFL 148
GRG E++ T LHAGGKF + YK SGGLHG+G S VN LS++L
Sbjct: 61 GRGMPTGMHASGI-----PTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWL 115
Query: 149 QLTINRNKKIHYME-FRYGVLQNRIIKTINGISVSPIKIIGDTNKQ-GTKIHFWVDEKIF 206
++ I R+ + YME F G G V +K IG T K+ GT + F D+ IF
Sbjct: 116 EVHIVRD-GVEYMERFEDG-----------GKPVGTLKKIGKTKKRNGTSVTFLPDDTIF 163
Query: 207 SNIEFHYEILKKRIRELSFLNNGVCITLIDER 238
S F YEIL +R+RE +FL GV ITL DER
Sbjct: 164 STTNFSYEILAERLRESAFLLKGVKITLTDER 195
>pdb|4EM7|A Chain A, Crystal Structure Of A Topoisomerase Atp Inhibitor
pdb|4EMV|A Chain A, Crystal Structure Of A Topoisomerase Atp Inhibitor
Length = 226
Score = 166 bits (419), Expect = 6e-41, Method: Composition-based stats.
Identities = 94/224 (41%), Positives = 130/224 (58%), Gaps = 19/224 (8%)
Query: 17 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVT 76
++Y+ +IQ+LEGL+AVRKRP MYIG T DG GLHHLV+EI+DNA+DE+L+G+ +I+VT
Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGST-DGAGLHHLVWEIVDNAVDEALSGFGDRIDVT 67
Query: 77 IYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGI 136
I GRG E++ T LHAGGKF + YK SGGLHG+
Sbjct: 68 INKDGSLTVQDHGRGMPTGMHAMGI-----PTVEVIFTILHAGGKFGQGGYKTSGGLHGV 122
Query: 137 GLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDT--NKQG 194
G S VN LS +L++ I R+ ++ F G G V+ +K IG +K G
Sbjct: 123 GSSVVNALSSWLEVEITRDGAVYKQRFENG-----------GKPVTTLKKIGTALKSKTG 171
Query: 195 TKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDER 238
TK+ F D IFS +F Y + +R+ E +FL V ++L D+R
Sbjct: 172 TKVTFMPDATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKR 215
>pdb|3FOE|C Chain C, Structural Insight Into The Quinolone-Dna Cleavage Complex
Of Type Iia Topoisomerases
pdb|3FOE|D Chain D, Structural Insight Into The Quinolone-Dna Cleavage Complex
Of Type Iia Topoisomerases
pdb|3FOF|C Chain C, Structural Insight Into The Quinolone-Dna Cleavage Complex
Of Type Iia Topoisomerases
pdb|3FOF|D Chain D, Structural Insight Into The Quinolone-Dna Cleavage Complex
Of Type Iia Topoisomerases
pdb|3K9F|C Chain C, Detailed Structural Insight Into The Quinolone-Dna
Cleavage Complex Of Type Iia Topoisomerases
pdb|3K9F|D Chain D, Detailed Structural Insight Into The Quinolone-Dna
Cleavage Complex Of Type Iia Topoisomerases
pdb|3KSA|C Chain C, Detailed Structural Insight Into The Dna Cleavage Complex
Of Type Iia Topoisomerases (Cleaved Form)
pdb|3KSA|D Chain D, Detailed Structural Insight Into The Dna Cleavage Complex
Of Type Iia Topoisomerases (Cleaved Form)
pdb|3KSB|C Chain C, Detailed Structural Insight Into The Dna Cleavage Complex
Of Type Iia Topoisomerases (Re-Sealed Form)
pdb|3KSB|D Chain D, Detailed Structural Insight Into The Dna Cleavage Complex
Of Type Iia Topoisomerases (Re-Sealed Form)
pdb|3LTN|C Chain C, Inhibitor-Stabilized Topoisomerase Iv-Dna Cleavage Complex
(S. Pneumoniae)
pdb|3LTN|D Chain D, Inhibitor-Stabilized Topoisomerase Iv-Dna Cleavage Complex
(S. Pneumoniae)
pdb|3RAF|C Chain C, Quinazolinedione-Dna Cleavage Complex Of Type Iv
Topoisomerase From S. Pneumoniae
pdb|3RAF|D Chain D, Quinazolinedione-Dna Cleavage Complex Of Type Iv
Topoisomerase From S. Pneumoniae
pdb|3RAD|C Chain C, Quinolone(Clinafloxacin)-Dna Cleavage Complex Of Type Iv
Topoisomerase From S. Pneumoniae
pdb|3RAD|D Chain D, Quinolone(Clinafloxacin)-Dna Cleavage Complex Of Type Iv
Topoisomerase From S. Pneumoniae
pdb|3RAE|C Chain C, Quinolone(Levofloxacin)-Dna Cleavage Complex Of Type Iv
Topoisomerase From S. Pneumoniae
pdb|3RAE|D Chain D, Quinolone(Levofloxacin)-Dna Cleavage Complex Of Type Iv
Topoisomerase From S. Pneumoniae
Length = 268
Score = 155 bits (391), Expect = 1e-37, Method: Composition-based stats.
Identities = 82/149 (55%), Positives = 99/149 (66%), Gaps = 1/149 (0%)
Query: 429 KNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIE 488
KN D LS KL Q KNP ELY+VEGDSAGGS KQGRDR+FQA+LPLRGKV+N
Sbjct: 25 KNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTA 84
Query: 489 KARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFF 548
KA+ I+ +E+ D F++E Y +IIIMTDAD DGAHI+ LLLTFF
Sbjct: 85 KAKMADILKNEEINTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFF 143
Query: 549 YRKMPKLIEYGYIYIAQPPLYKIKYGNNE 577
YR M L+E G++YIA PPLYK+ G +
Sbjct: 144 YRYMRPLVEAGHVYIALPPLYKMSKGKGK 172
Score = 76.3 bits (186), Expect = 6e-14, Method: Composition-based stats.
Identities = 39/70 (55%), Positives = 46/70 (65%)
Query: 755 LRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNV 814
LR + QRYKGLGEMN QLWETTMNP R L++V I+D A++ LMGD V
Sbjct: 188 LRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKV 247
Query: 815 ELRRKFIELN 824
E RRK+IE N
Sbjct: 248 EPRRKWIEDN 257
>pdb|3TTZ|A Chain A, Crystal Structure Of A Topoisomerase Atpase Inhibitor
pdb|3TTZ|B Chain B, Crystal Structure Of A Topoisomerase Atpase Inhibitor
pdb|3U2D|A Chain A, S. Aureus Gyrb Atpase Domain In Complex With Small
Molecule Inhibitor
pdb|3U2D|B Chain B, S. Aureus Gyrb Atpase Domain In Complex With Small
Molecule Inhibitor
pdb|3U2K|A Chain A, S. Aureus Gyrb Atpase Domain In Complex With A Small
Molecule Inhibitor
pdb|3U2K|B Chain B, S. Aureus Gyrb Atpase Domain In Complex With A Small
Molecule Inhibitor
Length = 198
Score = 142 bits (358), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 120/221 (54%), Gaps = 41/221 (18%)
Query: 19 YSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIY 78
Y A IQ+LEGLEAVRKRP MYIG TS+ GLHHLV+EI+DN+IDE+LAGY +I V I
Sbjct: 2 YGAGQIQVLEGLEAVRKRPGMYIGSTSE-RGLHHLVWEIVDNSIDEALAGYANQIEVVIE 60
Query: 79 XXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGL 138
GRG R A E+++T
Sbjct: 61 KDNWIKVTDNGRG----IPVDIQEKMGRPAVEVILTS----------------------- 93
Query: 139 SCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIH 198
S VN LS+ L++ ++RN+ I++ ++ GV Q +K +G T+K GT I
Sbjct: 94 SVVNALSQDLEVYVHRNETIYHQAYKKGVPQ------------FDLKEVGTTDKTGTVIR 141
Query: 199 FWVDEKIFSNIE-FHYEILKKRIRELSFLNNGVCITLIDER 238
F D +IF+ ++YE L++RIREL+FLN G+ ITL DER
Sbjct: 142 FKADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDER 182
>pdb|2ZJT|A Chain A, Crystal Structure Of Dna Gyrase B' Domain Sheds Lights On
The Mechanism For T-Segment Navigation
pdb|2ZJT|B Chain B, Crystal Structure Of Dna Gyrase B' Domain Sheds Lights On
The Mechanism For T-Segment Navigation
Length = 247
Score = 140 bits (353), Expect = 3e-33, Method: Composition-based stats.
Identities = 73/159 (45%), Positives = 104/159 (65%), Gaps = 1/159 (0%)
Query: 448 NPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXX 507
+P ELY+VEGDSAGGS K GRD FQA+LPLRGK++N+EKAR ++++ + +
Sbjct: 8 DPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITA 67
Query: 508 XXXXXEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPP 567
DEF++ KLRYH+I++M DAD+DG HI LLLT +R M LIE G++++AQPP
Sbjct: 68 LGTGI-HDEFDIGKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPP 126
Query: 568 LYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENG 606
LYK+K+ ++ E +L+ K K I+ E+G
Sbjct: 127 LYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKKINKEDG 165
Score = 79.7 bits (195), Expect = 6e-15, Method: Composition-based stats.
Identities = 35/68 (51%), Positives = 50/68 (73%)
Query: 766 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNA 825
QRYKGLGEM+ +LWETTM+P +R L +V + DA +AD++F LMG++V+ RR FI NA
Sbjct: 167 QRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVDARRSFITRNA 226
Query: 826 LHAKNIDI 833
+ +D+
Sbjct: 227 KDVRFLDV 234
>pdb|3IG0|A Chain A, Crystal Structure Of The Second Part Of The Mycobacterium
Tuberculosis Dna Gyrase Reaction Core: The Toprim Domain
At 2.1 A Resolution
pdb|3M4I|A Chain A, Crystal Structure Of The Second Part Of The Mycobacterium
Tuberculosis Dna Gyrase Reaction Core: The Toprim Domain
At 1.95 A Resolution
Length = 242
Score = 139 bits (351), Expect = 5e-33, Method: Composition-based stats.
Identities = 73/161 (45%), Positives = 105/161 (65%), Gaps = 1/161 (0%)
Query: 446 EKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXX 505
+ +P ELY+VEGDSAGGS K GRD FQA+LPLRGK++N+EKAR ++++ + +
Sbjct: 14 KTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAII 73
Query: 506 XXXXXXXEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQ 565
DEF++ KLRYH+I++M DAD+DG HI LLLT +R M LIE G++++AQ
Sbjct: 74 TALGTGI-HDEFDIGKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQ 132
Query: 566 PPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENG 606
PPLYK+K+ ++ E +L+ K K I+ E+G
Sbjct: 133 PPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKKINKEDG 173
Score = 79.3 bits (194), Expect = 8e-15, Method: Composition-based stats.
Identities = 35/68 (51%), Positives = 50/68 (73%)
Query: 766 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNA 825
QRYKGLGEM+ +LWETTM+P +R L +V + DA +AD++F LMG++V+ RR FI NA
Sbjct: 175 QRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVDARRSFITRNA 234
Query: 826 LHAKNIDI 833
+ +D+
Sbjct: 235 KDVRFLDV 242
>pdb|4GEE|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4GFN|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic
pdb|4GGL|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HXW|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
Length = 215
Score = 139 bits (349), Expect = 7e-33, Method: Composition-based stats.
Identities = 93/211 (44%), Positives = 124/211 (58%), Gaps = 18/211 (8%)
Query: 29 GLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYXXXXXXXXXX 88
GLEAVRKRP MYIG TS G GLHHLV+EI+DN+IDE+LAG+ I V I
Sbjct: 1 GLEAVRKRPGMYIGSTS-GEGLHHLVWEIVDNSIDEALAGFAKSIQVIIEPDDSITVIDD 59
Query: 89 GRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFL 148
GRG R A E V T LHAGGKF YK+SGGLHG+G S VN LS L
Sbjct: 60 GRGIPVGIQAKTG----RPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTSL 115
Query: 149 QLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSN 208
+ + ++ K++Y E+R G + V +K+I +T++ GT +HF D +IF+
Sbjct: 116 DVRVYKDGKVYYQEYRRGAV------------VDDLKVIEETDRHGTTVHFIPDPEIFTE 163
Query: 209 IE-FHYEILKKRIRELSFLNNGVCITLIDER 238
+ ++ L R+REL+FLN G+ I++ D R
Sbjct: 164 TTVYDFDKLATRVRELAFLNRGLHISIEDRR 194
>pdb|2XKK|A Chain A, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii
Topo Iv (Pare-Parc Fusion Truncate)
pdb|2XKK|C Chain C, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii
Topo Iv (Pare-Parc Fusion Truncate)
Length = 767
Score = 137 bits (344), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 101/172 (58%), Gaps = 7/172 (4%)
Query: 428 KKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNI 487
+K ++ L KLADC + E EL+IVEGDSAGGS KQ RD+ FQA++P+RGK+LN
Sbjct: 20 RKKIVSGPALPGKLADCVGQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNT 79
Query: 488 EKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTF 547
+ ++++ S++ D +L +LRY +I I+ DAD DG HI LL
Sbjct: 80 WEVSSDEVLASQEVHDIAIAIGVDPGSD--DLSELRYGKICILADADSDGLHIATLLCAL 137
Query: 548 FYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVK 599
F + P L+E G++Y+A PPL++I G + Y DD E L+ KNVK
Sbjct: 138 FVKHFPALVEEGHLYVAMPPLFRIDIGKDVHYALDDEE-----LETILKNVK 184
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 767 RYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDA 799
R+KGLGEMN QL ETTM+P R L+++ + DA
Sbjct: 193 RFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDA 225
>pdb|2XKJ|E Chain E, Crystal Structure Of Catalytic Core Of A. Baumannii Topo
Iv (Pare-Parc Fusion Truncate)
Length = 767
Score = 137 bits (344), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 101/172 (58%), Gaps = 7/172 (4%)
Query: 428 KKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNI 487
+K ++ L KLADC + E EL+IVEGDSAGGS KQ RD+ FQA++P+RGK+LN
Sbjct: 20 RKKIVSGPALPGKLADCVGQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNT 79
Query: 488 EKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTF 547
+ ++++ S++ D +L +LRY +I I+ DAD DG HI LL
Sbjct: 80 WEVSSDEVLASQEVHDIAIAIGVDPGSD--DLSELRYGKICILADADSDGLHIATLLCAL 137
Query: 548 FYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVK 599
F + P L+E G++Y+A PPL++I G + Y DD E L+ KNVK
Sbjct: 138 FVKHFPALVEEGHLYVAMPPLFRIDIGKDVHYALDDEE-----LETILKNVK 184
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 767 RYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDA 799
R+KGLGEMN QL ETTM+P R L+++ + DA
Sbjct: 193 RFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDA 225
>pdb|4B6C|A Chain A, Structure Of The M. Smegmatis Gyrb Atpase Domain In
Complex With An Aminopyrazinamide
pdb|4B6C|B Chain B, Structure Of The M. Smegmatis Gyrb Atpase Domain In
Complex With An Aminopyrazinamide
Length = 196
Score = 135 bits (341), Expect = 8e-32, Method: Composition-based stats.
Identities = 81/220 (36%), Positives = 121/220 (55%), Gaps = 39/220 (17%)
Query: 19 YSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIY 78
Y A SI ILEGLEAVRKRP MYIG T + GLHHL++E++DNA+DE++AG+ T+++V I+
Sbjct: 5 YGADSITILEGLEAVRKRPGMYIGSTGE-RGLHHLIWEVVDNAVDEAMAGFATRVDVKIH 63
Query: 79 XXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGL 138
GRG + E+HA G I + +G+
Sbjct: 64 ADGSVEVRDDGRG--------------------IPVEMHATGM-----PTIDVVMTQVGV 98
Query: 139 SCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIH 198
S VN LS L+ T+ R+ Y F+Y +++ G +K G+T + GT I
Sbjct: 99 SVVNALSTRLEATVLRDG---YEWFQY------YDRSVPG----KLKQGGETKETGTTIR 145
Query: 199 FWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDER 238
FW D +IF ++++E + +R++E++FLN G+ I L DER
Sbjct: 146 FWADPEIFETTDYNFETVARRLQEMAFLNKGLTIELTDER 185
>pdb|3G75|A Chain A, Crystal Structure Of Staphylococcus Aureus Gyrase B Co-
Complexed With Inhibitor
pdb|3G75|B Chain B, Crystal Structure Of Staphylococcus Aureus Gyrase B Co-
Complexed With Inhibitor
pdb|3G7B|A Chain A, Staphylococcus Aureus Gyrase B Co-Complex With Inhibitor
pdb|3G7B|B Chain B, Staphylococcus Aureus Gyrase B Co-Complex With Inhibitor
Length = 184
Score = 129 bits (325), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 113/211 (53%), Gaps = 41/211 (19%)
Query: 29 GLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYXXXXXXXXXX 88
GLEAVRKRP MYIG TS+ GLHHLV+EI+DN+IDE+LAGY +I V I
Sbjct: 1 GLEAVRKRPGMYIGSTSE-RGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDN 59
Query: 89 GRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFL 148
GRG R A E+++T S VN LS+ L
Sbjct: 60 GRG----IPVDIQEKMGRPAVEVILTS-----------------------SVVNALSQDL 92
Query: 149 QLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSN 208
++ ++RN+ I++ ++ GV Q +K +G T+K GT I F D +IF+
Sbjct: 93 EVYVHRNETIYHQAYKKGVPQ------------FDLKEVGTTDKTGTVIRFKADGEIFTE 140
Query: 209 IE-FHYEILKKRIRELSFLNNGVCITLIDER 238
++YE L++RIREL+FLN G+ ITL DER
Sbjct: 141 TTVYNYETLQQRIRELAFLNKGIQITLRDER 171
>pdb|4HZ0|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HZ0|B Chain B, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
Length = 213
Score = 129 bits (324), Expect = 6e-30, Method: Composition-based stats.
Identities = 72/214 (33%), Positives = 115/214 (53%), Gaps = 22/214 (10%)
Query: 26 ILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYXXXXXXX 85
+L GLE VR+RP MY +D T +HL E++DN++DE+LAG+ +++V ++
Sbjct: 1 VLTGLEPVRRRPGMY----TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEV 56
Query: 86 XXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLS 145
GRG A E+++ LHAGGKF+ +Y+ SGGLHG+G+S VN LS
Sbjct: 57 IDDGRGMPVDIHPEEGV----PAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALS 112
Query: 146 RFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQ--GTKIHFWVDE 203
+ +++ + R+ +++ + F NG V ++++G K+ GT +HFW DE
Sbjct: 113 KRVEVNVRRDGQVYNIAFE------------NGEKVQDLQVVGTCGKRNTGTSVHFWPDE 160
Query: 204 KIFSNIEFHYEILKKRIRELSFLNNGVCITLIDE 237
F + F L ++ + L GV IT DE
Sbjct: 161 TFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDE 194
>pdb|3FV5|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv Co-Complexed
With Inhibitor
pdb|3FV5|B Chain B, Crystal Structure Of E. Coli Topoisomerase Iv Co-Complexed
With Inhibitor
Length = 201
Score = 127 bits (319), Expect = 3e-29, Method: Composition-based stats.
Identities = 71/211 (33%), Positives = 113/211 (53%), Gaps = 22/211 (10%)
Query: 29 GLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYXXXXXXXXXX 88
GLE VR+RP MY +D T +HL E++DN++DE+LAG+ +++V ++
Sbjct: 1 GLEPVRRRPGMY----TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDD 56
Query: 89 GRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFL 148
GRG A E+++ LHAGGKF+ +Y+ SGGLHG+G+S VN LS+ +
Sbjct: 57 GRGMPVDIHPEEGV----PAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRV 112
Query: 149 QLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQ--GTKIHFWVDEKIF 206
++ + R+ +++ + F NG V ++++G K+ GT +HFW DE F
Sbjct: 113 EVNVRRDGQVYNIAFE------------NGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF 160
Query: 207 SNIEFHYEILKKRIRELSFLNNGVCITLIDE 237
+ F L ++ + L GV IT DE
Sbjct: 161 DSPRFSVSRLTHVLKAKAVLCPGVEITFKDE 191
>pdb|1S14|A Chain A, Crystal Structure Of Escherichia Coli Topoisomerase Iv
Pare 24kda Subunit
pdb|1S14|B Chain B, Crystal Structure Of Escherichia Coli Topoisomerase Iv
Pare 24kda Subunit
Length = 194
Score = 87.8 bits (216), Expect = 2e-17, Method: Composition-based stats.
Identities = 60/222 (27%), Positives = 103/222 (46%), Gaps = 45/222 (20%)
Query: 18 SYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTI 77
+Y+A +I++L GLE VR+RP MY +D T +HL E++DN++DE+LAG+ +++V +
Sbjct: 4 TYNADAIEVLTGLEPVRRRPGMY----TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVIL 59
Query: 78 YXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIG 137
+ GRG A E+++
Sbjct: 60 HADQSLEVIDDGRGMPVDIHPEEGV----PAVELILC----------------------- 92
Query: 138 LSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQ--GT 195
+S VN LS+ +++ + R+ +++ + F NG V ++++G K+ GT
Sbjct: 93 ISVVNALSKRVEVNVRRDGQVYNIAFE------------NGEKVQDLQVVGTCGKRNTGT 140
Query: 196 KIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDE 237
+HFW DE F + F L ++ + L GV IT DE
Sbjct: 141 SVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDE 182
>pdb|3CWV|A Chain A, Crystal Structure Of B-Subunit Of The Dna Gyrase From
Myxococcus Xanthus
pdb|3CWV|B Chain B, Crystal Structure Of B-Subunit Of The Dna Gyrase From
Myxococcus Xanthus
Length = 369
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/381 (20%), Positives = 149/381 (39%), Gaps = 41/381 (10%)
Query: 30 LEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYXXXXXXXXXXG 89
+E VRKRP MY GD + GLHHLV+ +LD A +E+ G C + + + G
Sbjct: 12 VENVRKRPGMYCGDVGE-YGLHHLVYFLLDVAYEEARRGECRDVVLEV----------GG 60
Query: 90 RGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQ 149
G R+ + + G F G + L LS Q
Sbjct: 61 DGSIALFCTS------RTVTAENLVRVATGAGFLGRPPGDGWGWDSM-LVVSLALSSRYQ 113
Query: 150 LTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNI 209
+ I + + + +G Q G +V+P++ + + ++G ++HF D IF +
Sbjct: 114 VDIWADGRQWRVMGEHGHPQG------EGAAVTPMEPMPVSAERGVRVHFVPDATIFEVL 167
Query: 210 EFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSGFVSYINKSKLVVH--P 267
F L +R EL+ L G+ ++ D + + + + +++ +H P
Sbjct: 168 AFDRARLSRRCNELAALAPGLRVSFADLQRGERTLWHLPGGVAQWAHVLTEARPQLHPEP 227
Query: 268 TIFQAXXXXXXXXXXXXXXDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAI 327
+F ++QW + +L F N + V G H+ G+ + A+
Sbjct: 228 VVFD-------FTWDGLRVQCALQWCEDEDSTLLSFANAVRTVRHGAHVKGVTQALRGAL 280
Query: 328 NKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPK--FNSQTKNKLVSSEVRKPVEE 385
K E ++ + +GLT ++++ P + F TK L + + + +
Sbjct: 281 AKLSGE------TRGAFPWARVAQGLTAIVAVSGPRRQMAFAGPTKELLAIPGLEEAIRK 334
Query: 386 IIIKTLFDFLQENPGESKLIC 406
+ + L+E+P L+
Sbjct: 335 QLQPLFIELLREHPVTPALLA 355
>pdb|4FM9|A Chain A, Human Topoisomerase Ii Alpha Bound To Dna
Length = 763
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 10/158 (6%)
Query: 428 KKNLIDDIELSTKLADCQEKNPELCELYIVEGDSA-----GGSVKQGRDRRFQAVLPLRG 482
K N I I D +N C L + EGDSA G GRD+ V PLRG
Sbjct: 1 KHNRIKGIPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRG 58
Query: 483 KVLNIEKARFEKIILSEQXXXXXXXXXXXXE---QDEFNLEKLRYHRIIIMTDADIDGAH 539
K+LN+ +A ++I+ + + + +DE +L+ LRY +I+IMTD D DG+H
Sbjct: 59 KILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSH 118
Query: 540 IRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNE 577
I+ LL+ F + P L+ + ++ P+ K+ E
Sbjct: 119 IKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQE 156
>pdb|3QX3|A Chain A, Human Topoisomerase Iibeta In Complex With Dna And
Etoposide
pdb|3QX3|B Chain B, Human Topoisomerase Iibeta In Complex With Dna And
Etoposide
Length = 803
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 10/127 (7%)
Query: 443 DCQEKNPELCELYIVEGDSA-----GGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIIL 497
D K+ C L + EGDSA G GRDR V PLRGK+LN+ +A ++I+
Sbjct: 44 DAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVREASHKQIME 101
Query: 498 SEQXXXXXXXXXXXXEQ---DEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPK 554
+ + ++ D +L+ LRY +I+IMTD D DG+HI+ LL+ F + P
Sbjct: 102 NAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPS 161
Query: 555 LIEYGYI 561
L+++G++
Sbjct: 162 LLKHGFL 168
>pdb|4GFH|F Chain F, Topoisomerase Ii-Dna-Amppnp Complex
Length = 1099
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 133/583 (22%), Positives = 210/583 (36%), Gaps = 117/583 (20%)
Query: 20 SASSIQILEGLEAVRKRPEMYIGDTSDG----------------------TGLHHLVFEI 57
++ Q + LE + KRP+ YIG GL + EI
Sbjct: 2 ASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEI 61
Query: 58 LDNAIDESLAGYCTK-INVTIYXXXXX-XXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTE 115
L NA D + K I+V I+ G+G E++
Sbjct: 62 LVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYI----PEMIFGH 117
Query: 116 LHAGGKFNKNSYKISGGLHGIGLSCVNGLS-RFLQLTINRNKKIHYMEFRYGVLQNRIIK 174
L ++ + K++GG +G G N S F+ T + N V Q + K
Sbjct: 118 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLN-----------VGQKYVQK 166
Query: 175 TINGISVS-PIKIIGDTNKQG---TKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGV 230
N +S+ P KI + K+G TK+ F D F E +IL R + +N V
Sbjct: 167 WENNMSICHPPKIT--SYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDINGSV 224
Query: 231 CITLIDERXXXXXXXXXXXXTSGFVSYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSM 290
R F +Y+ + PTI D+S
Sbjct: 225 -------RDINVYLNGKSLKIRNFKNYVELYLKSLIPTILYERINNRWEVAFAVS-DISF 276
Query: 291 QWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIR 350
Q + F N+I GGTH+ + I + I++ +++ + +I +
Sbjct: 277 Q--------QISFVNSIATTMGGTHVNYITDQIVKKISEILKKKKKKSVKSFQI-----K 323
Query: 351 EGLTCVLSIKIPDPKFNSQTKNKLVS------SEVRKPVEEI--IIKTLFDFLQENPGES 402
+ ++ I +P F SQTK +L + S P+E I I+KT
Sbjct: 324 NNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIMKT------------ 371
Query: 403 KLICXXXXXXXXXXXXXXXXXXLTRKKNLIDDIELSTKLADCQE---KNPELCELYIVEG 459
TR + I KL D + K C L + EG
Sbjct: 372 --------------------DLATRMFEIASRITNYPKLEDANKAGTKEGYKCTLVLTEG 411
Query: 460 DSA-----GGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQ 514
DSA G GRD + PLRGK+LN+ +A ++I+ + + +
Sbjct: 412 DSALSLAVAGLAVVGRD--YYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRK 469
Query: 515 DEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIE 557
+ + LRY ++IMTD D DG+HI+ L++ F P L++
Sbjct: 470 KYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFPGLLD 512
>pdb|4GFH|A Chain A, Topoisomerase Ii-Dna-Amppnp Complex
Length = 1103
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 135/585 (23%), Positives = 215/585 (36%), Gaps = 117/585 (20%)
Query: 20 SASSIQILEGLEAVRKRPEMYIGDTSDG----------------------TGLHHLVFEI 57
++ Q + LE + KRP+ YIG GL + EI
Sbjct: 2 ASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEI 61
Query: 58 LDNAIDESLAGYCTK-INVTIYXXXXX-XXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTE 115
L NA D + K I+V I+ G+G E++
Sbjct: 62 LVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYI----PEMIFGH 117
Query: 116 LHAGGKFNKNSYKISGGLHGIGLSCVNGLS-RFLQLTINRNKKIHYMEFRYGVLQNRIIK 174
L ++ + K++GG +G G N S F+ T + N V Q + K
Sbjct: 118 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLN-----------VGQKYVQK 166
Query: 175 TINGISVS-PIKIIGDTNKQG---TKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGV 230
N +S+ P KI + K+G TK+ F D F E +IL R + +N V
Sbjct: 167 WENNMSICHPPKIT--SYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDINGSV 224
Query: 231 CITLIDERXXXXXXXXXXXXTSGFVSYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSM 290
R F +Y+ + PTI D+S
Sbjct: 225 -------RDINVYLNGKSLKIRNFKNYVELYLKSLIPTILYERINNRWEVAFAVS-DISF 276
Query: 291 QWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIR 350
Q + F N+I GGTH+ + I + I++ +++ + +I +
Sbjct: 277 Q--------QISFVNSIATTMGGTHVNYITDQIVKKISEILKKKKKKSVKSFQI-----K 323
Query: 351 EGLTCVLSIKIPDPKFNSQTKNKLVS------SEVRKPVEEI--IIKT-----LFDFLQE 397
+ ++ I +P F SQTK +L + S P+E I I+KT +F+
Sbjct: 324 NNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIMKTDLATRMFEIADA 383
Query: 398 NPGESKLICXXXXXXXXXXXXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIV 457
N ES++ T L D + TK C L +
Sbjct: 384 N--ESRI---------------------TNYPKLEDANKAGTKEG-------YKCTLVLT 413
Query: 458 EGDSA-----GGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXX 512
EGDSA G GRD + PLRGK+LN+ +A ++I+ + +
Sbjct: 414 EGDSALSLAVAGLAVVGRD--YYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQH 471
Query: 513 EQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIE 557
+ + + LRY ++IMTD D DG+HI+ L++ F P L++
Sbjct: 472 RKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFPGLLD 516
>pdb|3L4J|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Apo
pdb|3L4K|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Metal-Bound
Length = 722
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 7/111 (6%)
Query: 452 CELYIVEGDSA-----GGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXX 506
C L + EGDSA G GRD + PLRGK+LN+ +A ++I+ + +
Sbjct: 23 CTLVLTEGDSALSLAVAGLAVVGRD--YYGCYPLRGKMLNVREASADQILKNAEIQAIKK 80
Query: 507 XXXXXXEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIE 557
+ + + LRY ++IMTD D DG+HI+ L++ F P L++
Sbjct: 81 IMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFPGLLD 131
>pdb|1BGW|A Chain A, Topoisomerase Residues 410-1202
pdb|1BJT|A Chain A, Topoisomerase Ii Residues 409-1201
Length = 793
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 452 CELYIVEGDSA-----GGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXX 506
C L + EGDSA G GRD + PLRGK+LN+ +A ++I+ + +
Sbjct: 35 CTLVLTEGDSALSLAVAGLAVVGRD--YYGCYPLRGKMLNVREASADQILKNAEIQAIKK 92
Query: 507 XXXXXXEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFF 548
+ + + LRY ++IMTD D DG+HI+ L++ F
Sbjct: 93 IMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFL 134
>pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-segment Dna
Length = 759
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 452 CELYIVEGDSA-----GGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXX 506
C L + EGDSA G GRD + PLRGK+LN+ +A ++I+ + +
Sbjct: 25 CTLVLTEGDSALSLAVAGLAVVGRD--YYGCYPLRGKMLNVREASADQILKNAEIQAIKK 82
Query: 507 XXXXXXEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFF 548
+ + + LRY ++IMTD D DG+HI+ L++ F
Sbjct: 83 IMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFL 124
>pdb|1K58|A Chain A, Crystal Structure Of Human Angiogenin Variant D116h
Length = 123
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 106 RSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINR 154
+S+ ++ +LH G + Y+ + G + ++C NGL L +I R
Sbjct: 73 KSSFQVTTCKLHGGSPWPPCQYRATAGFRNVVVACENGLPVHLHQSIFR 121
>pdb|1UN5|A Chain A, Arh-Ii, An AngiogeninRNASE A CHIMERA
Length = 125
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 106 RSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINR 154
+S+ ++ +LH G + Y+ + G + ++C NGL L +I R
Sbjct: 75 KSSFQVTTCKLHGGSPWPPCQYRATAGFRNVVVACENGLPVHLDQSIFR 123
>pdb|1UN3|A Chain A, Crystal Structure Of Human Angiogenin Variant T44d
Length = 123
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 106 RSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINR 154
+S+ ++ +LH G + Y+ + G + ++C NGL L +I R
Sbjct: 73 KSSFQVTTCKLHGGSPWPPCQYRATAGFRNVVVACENGLPVHLDQSIFR 121
>pdb|1B1J|A Chain A, Crystal Structure Of Human Angiogenin Variant H13a
Length = 123
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 106 RSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINR 154
+S+ ++ +LH G + Y+ + G + ++C NGL L +I R
Sbjct: 73 KSSFQVTTCKLHGGSPWPPCQYRATAGFRNVVVACENGLPVHLDQSIFR 121
>pdb|1B1I|A Chain A, Crystal Structure Of Human Angiogenin
pdb|1H52|A Chain A, Binding Of Phosphate And Pyrophosphate Ions At The Active
Site Of Human Angiogenin As Revealed By X-Ray
Crystallography
pdb|1HBY|A Chain A, Binding Of Phosphate And Pyrophosphate Ions At The Active
Site Of Human Angiogenin As Revealed By X-Ray
Crystallography
pdb|1H0D|C Chain C, Crystal Structure Of Human Angiogenin In Complex With Fab
Fragment Of Its Monoclonal Antibody Mab 26-2f
Length = 123
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 106 RSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINR 154
+S+ ++ +LH G + Y+ + G + ++C NGL L +I R
Sbjct: 73 KSSFQVTTCKLHGGSPWPPCQYRATAGFRNVVVACENGLPVHLDQSIFR 121
>pdb|1B1E|A Chain A, Crystal Structure Of Human Angiogenin Variant K40q
Length = 123
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 106 RSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINR 154
+S+ ++ +LH G + Y+ + G + ++C NGL L +I R
Sbjct: 73 KSSFQVTTCKLHGGSPWPPCQYRATAGFRNVVVACENGLPVHLDQSIFR 121
>pdb|1A4Y|B Chain B, Ribonuclease Inhibitor-Angiogenin Complex
pdb|1A4Y|E Chain E, Ribonuclease Inhibitor-Angiogenin Complex
pdb|2ANG|A Chain A, Crystal Structure Of Human Angiogenin Of The Met(-1) Form
pdb|1ANG|A Chain A, Crystal Structure Of Human Angiogenin Reveals The
Structural Basis For Its Functional Divergence From
Ribonuclease
pdb|1AWZ|A Chain A, 3d Solution Structure Of Human Angiogenin Determined By
1h, 15n Nmr Spectroscopy, 30 Structures
Length = 123
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 106 RSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINR 154
+S+ ++ +LH G + Y+ + G + ++C NGL L +I R
Sbjct: 73 KSSFQVTTCKLHGGSPWPPCQYRATAGFRNVVVACENGLPVHLDQSIFR 121
>pdb|4AOH|A Chain A, Structural Snapshots And Functional Analysis Of Human
Angiogenin Variants Associated With Amyotrophic Lateral
Sclerosis (Als)
Length = 124
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 106 RSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINR 154
+S+ ++ +LH G + Y+ + G + ++C NGL L +I R
Sbjct: 74 KSSFQVTTCKLHGGSPWPPCQYRATAGFRNVVVACENGLPVHLDQSIFR 122
>pdb|4AHK|A Chain A, K54e - Angiogenin Mutants And Amyotrophic Lateral
Sclerosis - A Biochemical And Biological Analysis
pdb|4AHK|B Chain B, K54e - Angiogenin Mutants And Amyotrophic Lateral
Sclerosis - A Biochemical And Biological Analysis
Length = 123
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 106 RSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINR 154
+S+ ++ +LH G + Y+ + G + ++C NGL L +I R
Sbjct: 73 KSSFQVTTCKLHGGSPWPPCQYRATAGFRNVVVACENGLPVHLDQSIFR 121
>pdb|4AHJ|A Chain A, I46v - Angiogenin Mutants And Amyotrophic Lateral
Sclerosis - A Biochemical And Biological Analysis
Length = 123
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 106 RSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINR 154
+S+ ++ +LH G + Y+ + G + ++C NGL L +I R
Sbjct: 73 KSSFQVTTCKLHGGSPWPPCQYRATAGFRNVVVACENGLPVHLDQSIFR 121
>pdb|4AHI|A Chain A, K40i - Angiogenin Mutants And Amyotrophic Lateral
Sclerosis - A Biochemical And Biological Analysis
Length = 123
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 106 RSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINR 154
+S+ ++ +LH G + Y+ + G + ++C NGL L +I R
Sbjct: 73 KSSFQVTTCKLHGGSPWPPCQYRATAGFRNVVVACENGLPVHLDQSIFR 121
>pdb|4AHH|A Chain A, R31k - Angiogenin Mutants And Amyotrophic Lateral
Sclerosis - A Biochemical And Biological Analysis
Length = 123
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 106 RSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINR 154
+S+ ++ +LH G + Y+ + G + ++C NGL L +I R
Sbjct: 73 KSSFQVTTCKLHGGSPWPPCQYRATAGFRNVVVACENGLPVHLDQSIFR 121
>pdb|4AHG|A Chain A, S28n - Angiogenin Mutants And Amyotrophic Lateral
Sclerosis - A Biochemical And Biological Analysis
Length = 123
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 106 RSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINR 154
+S+ ++ +LH G + Y+ + G + ++C NGL L +I R
Sbjct: 73 KSSFQVTTCKLHGGSPWPPCQYRATAGFRNVVVACENGLPVHLDQSIFR 121
>pdb|4AHF|A Chain A, K17e - Angiogenin Mutants And Amyotrophic Lateral
Sclerosis - A Biochemical And Biological Analysis
Length = 123
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 106 RSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINR 154
+S+ ++ +LH G + Y+ + G + ++C NGL L +I R
Sbjct: 73 KSSFQVTTCKLHGGSPWPPCQYRATAGFRNVVVACENGLPVHLDQSIFR 121
>pdb|4AHE|A Chain A, K17i - Angiogenin Mutants And Amyotrophic Lateral
Sclerosis - A Biochemical And Biological Analysis
Length = 123
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 106 RSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINR 154
+S+ ++ +LH G + Y+ + G + ++C NGL L +I R
Sbjct: 73 KSSFQVTTCKLHGGSPWPPCQYRATAGFRNVVVACENGLPVHLDQSIFR 121
>pdb|4AHD|A Chain A, Q12l - Angiogenin Mutants And Amyotrophic Lateral
Sclerosis - A Biochemical And Biological Analysis
pdb|4AHD|B Chain B, Q12l - Angiogenin Mutants And Amyotrophic Lateral
Sclerosis - A Biochemical And Biological Analysis
Length = 123
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 106 RSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINR 154
+S+ ++ +LH G + Y+ + G + ++C NGL L +I R
Sbjct: 73 KSSFQVTTCKLHGGSPWPPCQYRATAGFRNVVVACENGLPVHLDQSIFR 121
>pdb|1GV7|A Chain A, Arh-I, An AngiogeninRNASE A CHIMERA
Length = 123
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 106 RSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINR 154
+S+ ++ +LH G + Y+ + G + ++C NGL L +I R
Sbjct: 75 KSSFQVTTCKLHGGSPWPPCQYRATAGFRNVVVACENGLPVHLDQSIFR 123
>pdb|1UN4|A Chain A, Crystal Structure Of Human Angiogenin Variant T80a
Length = 123
Score = 30.0 bits (66), Expect = 5.3, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 106 RSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINR 154
+S+ ++ +LH G + Y+ + G + ++C NGL L +I R
Sbjct: 73 KSSFQVTACKLHGGSPWPPCQYRATAGFRNVVVACENGLPVHLDQSIFR 121
>pdb|4AHM|A Chain A, V113i - Angiogenin Mutants And Amyotrophic Lateral
Sclerosis - A Biochemical And Biological Analysis
Length = 123
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 106 RSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINR 154
+S+ ++ +LH G + Y+ + G + ++C NGL L +I R
Sbjct: 73 KSSFQVTTCKLHGGSPWPPCQYRATAGFRNVVVACENGLPIHLDQSIFR 121
>pdb|4AHL|A Chain A, P112l - Angiogenin Mutants And Amyotrophic Lateral
Sclerosis - A Biochemical And Biological Analysis
Length = 123
Score = 29.6 bits (65), Expect = 7.9, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 106 RSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINR 154
+S+ ++ +LH G + Y+ + G + ++C NGL L +I R
Sbjct: 73 KSSFQVTTCKLHGGSPWPPCQYRATAGFRNVVVACENGLLVHLDQSIFR 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,503,912
Number of Sequences: 62578
Number of extensions: 770564
Number of successful extensions: 2348
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2186
Number of HSP's gapped (non-prelim): 82
length of query: 833
length of database: 14,973,337
effective HSP length: 107
effective length of query: 726
effective length of database: 8,277,491
effective search space: 6009458466
effective search space used: 6009458466
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)