BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13357
(833 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P22118|GYRB_NEIGO DNA gyrase subunit B OS=Neisseria gonorrhoeae GN=gyrB PE=3 SV=1
Length = 781
Score = 818 bits (2112), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/829 (50%), Positives = 576/829 (69%), Gaps = 56/829 (6%)
Query: 11 IQDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYC 70
+ + + Y A SIQ+LEGLEAV KRP MYIGDT DG+GLHH+VFE+LDNAIDE+LAG+C
Sbjct: 1 MTEQKHEEYGADSIQVLEGLEAVPKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHC 60
Query: 71 TKINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKIS 130
KI VTI++D+S+S++DNGRG+P I K RSAAE++MT LHAGGKF+ NSYKIS
Sbjct: 61 DKITVTIHADHSVSVADNGRGMPTGIH----PKEGRSAAEVIMTVLHAGGKFDNNSYKIS 116
Query: 131 GGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDT 190
GGLHG+G+S VN LS ++ LTI R+ K H++ F + G + P+KI+GD+
Sbjct: 117 GGLHGVGVSVVNALSDWVTLTIYRDGKEHFVRF------------VRGETEEPLKIVGDS 164
Query: 191 NKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGG 250
+K+GT + F + F NIE+ ++IL KRIRELSFLNNGV I L DER K E F GG
Sbjct: 165 DKKGTTVRFLAGTETFGNIEYSFDILAKRIRELSFLNNGVDIELTDERDGKHESFALSGG 224
Query: 251 TSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQV 310
+GFV Y+N+ K +H IF A G +K+ ++++ +MQWN+SY E++ CFTNNI Q
Sbjct: 225 VAGFVQYMNRKKTPLHEKIFYAFG-----EKDGMSVECAMQWNDSYQESVQCFTNNIPQR 279
Query: 311 DGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQT 370
DGGTHLT LR +TR IN YIE NE KK+K+E G+D+REGLTCVLS+K+PDPKF+SQT
Sbjct: 280 DGGTHLTALRQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQT 339
Query: 371 KNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKN 430
K+KLVS E+ V E+I + L DFL+ENP E+K+I KI++AAR+R+AARK RE+TR+K
Sbjct: 340 KDKLVSGEIGPVVNEVINQALTDFLEENPNEAKIITGKIVDAARARQAARKAREITRRKG 399
Query: 431 LIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKA 490
L+D + L KLADCQEK+P L ELY+VEG+SAGGS QGRDR+FQA+LPL+GK+LN
Sbjct: 400 LMDGLGLPGKLADCQEKDPALSELYLVEGNSAGGSAMQGRDRKFQAILPLKGKILN---- 455
Query: 491 RFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYR 550
+ TLI+ LG GI ++EFN EKLRYHRIIIMTDAD+DGAHIR LLLTFFYR
Sbjct: 456 ----------VATLITALGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYR 505
Query: 551 KMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIK 610
+MP L+E GYIYIAQPPLYK KYG E YL+D++E+++++L +A + K++S +G I+
Sbjct: 506 QMPDLVERGYIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVS--DGRTIE 563
Query: 611 ENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLN- 669
++ ++ + + +D +L A++ ++L + ENA++ ++ L+
Sbjct: 564 GAELADTAKQFLLAKTVIEQESRFVDELVLRAMLHASPIDLTSSENADKAVAELSGLLDE 623
Query: 670 -DSNIEIIV-----EFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFK 723
++ +E I +F ++ K N+ +++ K F+N+K Y+ L + K
Sbjct: 624 KEAALERIEGHEGHQFIKITRKLHGNVMVSYIEPK-------FLNSKAYQTLTQTAAALK 676
Query: 724 KIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETT 783
++G+G + K E Y A++F ++ L + A+ + QRYKGLGEMNP QLWETT
Sbjct: 677 GLVGEGAKLYKGENE----YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETT 732
Query: 784 MNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNID 832
M+P +R LLKV+I+D I AD++F+TLMGD VE RR FIE NAL A+NID
Sbjct: 733 MDPTVRRLLKVRIEDRI-ADEVFVTLMGDEVEPRRAFIENNALIAQNID 780
>sp|Q9KVX3|GYRB_VIBCH DNA gyrase subunit B OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=gyrB PE=3 SV=1
Length = 805
Score = 816 bits (2108), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/825 (49%), Positives = 576/825 (69%), Gaps = 34/825 (4%)
Query: 19 YSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIY 78
Y +SSI++L+GL+AVRKRP MYIGDT DGTGLHH+VFE++DN+IDE+LAGYC I VTI+
Sbjct: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVVTIH 64
Query: 79 SDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGL 138
DNS+S+SD+GRGIP ++ ++K SAAE++MT LHAGGKF+ NSYK+SGGLHG+G+
Sbjct: 65 EDNSVSVSDDGRGIPTEMHPEEK----VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120
Query: 139 SCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIH 198
S VN LS + LTI R KIH + +GV Q +P+ ++G+T + GT +
Sbjct: 121 SVVNALSEKVLLTIYRGGKIHSQTYHHGVPQ------------APLAVVGETERTGTTVR 168
Query: 199 FWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIK-KKEIFEFKGGTSGFVSY 257
FW + F+NIEFHY+IL KR+RELSFLN+GV I L DER + KK+ F ++GG FV++
Sbjct: 169 FWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFVTH 228
Query: 258 INKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLT 317
+N++K +H +F E+++ I+++V+MQWN+ + ENI CFTNNI Q DGGTHL
Sbjct: 229 LNRNKTPIHEKVFHFN----QEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLA 284
Query: 318 GLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSS 377
G R +TR +N Y+++ F KK++ G+D REGLT V+S+K+PDPKF+SQTK+KLVSS
Sbjct: 285 GFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSS 344
Query: 378 EVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDDIEL 437
EV+ VE + + L DFL ENP E+K +C KII+AAR+REAARK RE+TR+K +D L
Sbjct: 345 EVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGL 404
Query: 438 STKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIIL 497
KLADCQEK+P L ELYIVEGDSAGGS KQGR+R+ QA+LPL+GK+LN+EKARF+K++
Sbjct: 405 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 464
Query: 498 SEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIE 557
S+++ TLI+ LG GI +DE+N +KLRYH IIIMTDAD+DG+HIR LLLTFFYR+MP+LIE
Sbjct: 465 SQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIE 524
Query: 558 YGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKL 617
GYIYIAQPPLYK+K G E Y++D+ +Y + +A +L + + KL
Sbjct: 525 RGYIYIAQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKL 584
Query: 618 IDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLD---TRENAEQFAKKIIKKLN----- 669
+ +YN I++V R+ + ++L ++ +N + + E + ++++++LN
Sbjct: 585 VQQYNAAIKLVERMSRRYPYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAKEVG 644
Query: 670 DSNIEIIVEFDQLNNKYLLNIK-KKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGK 728
S ++VE + N YL I+ + Y++ + IN+K+Y KL + +I
Sbjct: 645 ASQYSVLVEHNAELNVYLPKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEA 704
Query: 729 GVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMI 788
G I++ GE+++ ++ F +++L E+ + QRYKGLGEMNP QLWETTM+P
Sbjct: 705 GAFIKR--GERVQPISS--FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPET 760
Query: 789 RCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 833
R +++V I+DA+ AD++F TLMGD VE RR FIE NAL N+D+
Sbjct: 761 RRMMQVTIEDAVGADELFTTLMGDQVEPRRAFIETNALKVANLDV 805
>sp|O51859|GYRB_VIBPA DNA gyrase subunit B OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=gyrB PE=3 SV=2
Length = 805
Score = 801 bits (2069), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/826 (48%), Positives = 576/826 (69%), Gaps = 36/826 (4%)
Query: 19 YSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIY 78
Y +SSI++L+GL+AVRKRP MYIGDT DGTGLHH+VFE++DN+IDE+LAG+C I VTI+
Sbjct: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVVTIH 64
Query: 79 SDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGL 138
DNS+S+SD+GRGIP ++ ++K SAAE++MT LHAGGKF+ NSYK+SGGLHG+G+
Sbjct: 65 EDNSVSVSDDGRGIPTEMHPEEK----VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120
Query: 139 SCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIH 198
S VN LS + LTI+R IH +R+G + +P+ ++GDT+K GT+I
Sbjct: 121 SVVNALSEKVVLTIHRGGHIHTQTYRHGEPE------------APLAVVGDTDKTGTQIR 168
Query: 199 FWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDER-IKKKEIFEFKGGTSGFVSY 257
FW + FSN EFHY+IL KR+RELSFLN+GV I LIDER K++ F ++GG FV +
Sbjct: 169 FWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQDHFMYEGGIQAFVQH 228
Query: 258 INKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLT 317
+N +K + IF E+++ I+++V+MQWN+ + ENI CFTNNI Q DGGTHL
Sbjct: 229 LNTNKTPIIEKIFHFD----LEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLA 284
Query: 318 GLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSS 377
G R+ +TR +N ++++ F KK+K G+D REGLT V+S+K+PDPKF+SQTK+KLVSS
Sbjct: 285 GFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSS 344
Query: 378 EVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDDIEL 437
EV+ VE + + L +FL ENP E+K++C KII+AAR+REAARK RE+TR+K +D L
Sbjct: 345 EVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGL 404
Query: 438 STKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIIL 497
KLADCQEK+P L ELYIVEGDSAGGS KQGR+R+ QA+LPL+GK+LN+EKARF+K++
Sbjct: 405 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 464
Query: 498 SEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIE 557
S+++ TLI+ LG GI +DE+N +KLRYH IIIMTDAD+DG+HIR LLLTFFYR+MP+LIE
Sbjct: 465 SQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIE 524
Query: 558 YGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKL 617
GY+YIAQPPLYK+K G E Y++D+ +Y + +A N L + KL
Sbjct: 525 RGYVYIAQPPLYKVKKGKQEQYIKDEEAMNQYQVSLALDNASLHVNAEAPALAGEALEKL 584
Query: 618 IDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENA---EQFAKKIIKKLNDSNI- 673
+ +YN I++ R+ + +++ ++ L + +A E + K+++++LN +
Sbjct: 585 VQQYNAGIKLADRMSRRYPRALVHELIYTSRLTAEQCHDAAAVEAWTKQLVEQLNAKEVG 644
Query: 674 --EIIVEFDQLNNKYLLNIKKKFLKKKN----YIIDINFINNKDYKKLVSIISTFKKIIG 727
+ E +L+ + L++ K ++ + + ++F+N+K+Y KL + ++
Sbjct: 645 ASQYSYEV-ELHAELGLSLPKIIVRTHGVTHEHALSVDFLNSKEYGKLADLSEVLDGLLE 703
Query: 728 KGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPM 787
+G I++ GE+ ++F + + +L E+ + +QRYKGLGEMNP QLWETTM+P
Sbjct: 704 EGAYIKR--GERT--LPVSSFAEALEWLVKESMRGLSRQRYKGLGEMNPDQLWETTMDPE 759
Query: 788 IRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 833
R +++V I+DA+ AD++F TLMGD VE RR FIE NAL N+D+
Sbjct: 760 TRRMMQVTIEDAVGADQLFTTLMGDQVEPRRHFIEENALKVANLDV 805
>sp|P0A2I3|GYRB_SALTY DNA gyrase subunit B OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=gyrB PE=3 SV=2
Length = 804
Score = 797 bits (2058), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/827 (48%), Positives = 578/827 (69%), Gaps = 37/827 (4%)
Query: 18 SYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTI 77
SY +SSI++L+GL+AVRKRP MYIGDT DGTGLHH+VFE++DNAIDE+LAG+C I VTI
Sbjct: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVVTI 63
Query: 78 YSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIG 137
++DNS+S++D+GRGIP I ++ SAAE++MT LHAGGKF+ NSYK+SGGLHG+G
Sbjct: 64 HADNSVSVTDDGRGIPTGIHPEEG----VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 119
Query: 138 LSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKI 197
+S VN LS+ L+L I R+ KIH + +GV Q +P+ + GDT+K GT +
Sbjct: 120 VSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ------------APLAVTGDTDKTGTMV 167
Query: 198 HFWVDEKIFSNI-EFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFVS 256
FW + F+N+ EF YEIL KR+RELSFLN+GV I L D+R K++ F ++GG FV
Sbjct: 168 RFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVE 227
Query: 257 YINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHL 316
Y+NK+K +HP IF S +K+ I ++V++QWN+ + ENI CFTNNI Q DGGTHL
Sbjct: 228 YLNKNKTPIHPNIFY-----FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 282
Query: 317 TGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVS 376
G R+ +TR +N Y+++ + KK+K+ G+D REGL V+S+K+PDPKF+SQTK+KLVS
Sbjct: 283 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 342
Query: 377 SEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDDIE 436
SEV+ VE+ + + L ++L ENP ++K++ KII+AAR+REAAR+ RE+TR+K +D
Sbjct: 343 SEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 402
Query: 437 LSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKII 496
L KLADCQE++P L ELY+VEGDSAGGS KQGR+R+ QA+LPL+GK+LN+EKARF+K++
Sbjct: 403 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 462
Query: 497 LSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLI 556
S+++ TLI+ LG GI +DE+N +KLRYH IIIMTDAD+DG+HIR LLLTFFYR+MP+++
Sbjct: 463 SSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIV 522
Query: 557 EYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFK 616
E G++YIAQPPLYK+K G E Y++DD ++Y + IA L + + + K
Sbjct: 523 ERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHANAHAPALSGEALEK 582
Query: 617 LIDKYNKTIEIVHRLKQIIDISILSAIMSDVIL---NLDTRENAEQFAKKIIKKLND--- 670
L+ +YN T +++ R+++ ++L ++ L +L + ++ +I +LN+
Sbjct: 583 LVSEYNATQKMIGRMERRFPKALLKELVYQPTLTEADLSDEQTVTRWVNALITELNEKEQ 642
Query: 671 --SNIEIIVEFDQLNNKY--LLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKII 726
S + V + N + ++ ++ + +Y +D F+ +Y+++ ++ + +I
Sbjct: 643 HGSQWKFDVHTNTEQNLFEPIVRVRTHGV-DTDYPLDHEFVTGAEYRRICTLGEKLRGLI 701
Query: 727 GKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNP 786
+ I++ GE+ + T+ F + + +L E+ + QRYKGLGEMNP QLWETTM+P
Sbjct: 702 EEDAFIER--GERRQPVTS--FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDP 757
Query: 787 MIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 833
R +L+V +KDAI+AD++F TLMGD VE RR FIE NAL A NIDI
Sbjct: 758 ESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804
>sp|P0A2I4|GYRB_SALTI DNA gyrase subunit B OS=Salmonella typhi GN=gyrB PE=3 SV=2
Length = 804
Score = 797 bits (2058), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/827 (48%), Positives = 578/827 (69%), Gaps = 37/827 (4%)
Query: 18 SYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTI 77
SY +SSI++L+GL+AVRKRP MYIGDT DGTGLHH+VFE++DNAIDE+LAG+C I VTI
Sbjct: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVVTI 63
Query: 78 YSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIG 137
++DNS+S++D+GRGIP I ++ SAAE++MT LHAGGKF+ NSYK+SGGLHG+G
Sbjct: 64 HADNSVSVTDDGRGIPTGIHPEEG----VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 119
Query: 138 LSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKI 197
+S VN LS+ L+L I R+ KIH + +GV Q +P+ + GDT+K GT +
Sbjct: 120 VSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ------------APLAVTGDTDKTGTMV 167
Query: 198 HFWVDEKIFSNI-EFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFVS 256
FW + F+N+ EF YEIL KR+RELSFLN+GV I L D+R K++ F ++GG FV
Sbjct: 168 RFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVE 227
Query: 257 YINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHL 316
Y+NK+K +HP IF S +K+ I ++V++QWN+ + ENI CFTNNI Q DGGTHL
Sbjct: 228 YLNKNKTPIHPNIFY-----FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 282
Query: 317 TGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVS 376
G R+ +TR +N Y+++ + KK+K+ G+D REGL V+S+K+PDPKF+SQTK+KLVS
Sbjct: 283 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 342
Query: 377 SEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDDIE 436
SEV+ VE+ + + L ++L ENP ++K++ KII+AAR+REAAR+ RE+TR+K +D
Sbjct: 343 SEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 402
Query: 437 LSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKII 496
L KLADCQE++P L ELY+VEGDSAGGS KQGR+R+ QA+LPL+GK+LN+EKARF+K++
Sbjct: 403 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 462
Query: 497 LSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLI 556
S+++ TLI+ LG GI +DE+N +KLRYH IIIMTDAD+DG+HIR LLLTFFYR+MP+++
Sbjct: 463 SSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIV 522
Query: 557 EYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFK 616
E G++YIAQPPLYK+K G E Y++DD ++Y + IA L + + + K
Sbjct: 523 ERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHANAHAPALSGEALEK 582
Query: 617 LIDKYNKTIEIVHRLKQIIDISILSAIMSDVIL---NLDTRENAEQFAKKIIKKLND--- 670
L+ +YN T +++ R+++ ++L ++ L +L + ++ +I +LN+
Sbjct: 583 LVSEYNATQKMIGRMERRFPKALLKELVYQPTLTEADLSDEQTVTRWVNALITELNEKEQ 642
Query: 671 --SNIEIIVEFDQLNNKY--LLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKII 726
S + V + N + ++ ++ + +Y +D F+ +Y+++ ++ + +I
Sbjct: 643 HGSQWKFDVHTNTEQNLFEPIVRVRTHGV-DTDYPLDHEFVTGAEYRRICTLGEKLRGLI 701
Query: 727 GKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNP 786
+ I++ GE+ + T+ F + + +L E+ + QRYKGLGEMNP QLWETTM+P
Sbjct: 702 EEDAFIER--GERRQPVTS--FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDP 757
Query: 787 MIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 833
R +L+V +KDAI+AD++F TLMGD VE RR FIE NAL A NIDI
Sbjct: 758 ESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804
>sp|P0AES8|GYRB_SHIFL DNA gyrase subunit B OS=Shigella flexneri GN=gyrB PE=3 SV=2
Length = 804
Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/827 (48%), Positives = 577/827 (69%), Gaps = 37/827 (4%)
Query: 18 SYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTI 77
SY +SSI++L+GL+AVRKRP MYIGDT DGTGLHH+VFE++DNAIDE+LAG+C +I VTI
Sbjct: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63
Query: 78 YSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIG 137
++DNS+S+ D+GRGIP I ++ SAAE++MT LHAGGKF+ NSYK+SGGLHG+G
Sbjct: 64 HADNSVSVQDDGRGIPTGIHPEEG----VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 119
Query: 138 LSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKI 197
+S VN LS+ L+L I R KIH + +GV Q +P+ + G+T K GT +
Sbjct: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQ------------APLAVTGETEKTGTMV 167
Query: 198 HFWVDEKIFSNI-EFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFVS 256
FW + F+N+ EF YEIL KR+RELSFLN+GV I L D+R K++ F ++GG FV
Sbjct: 168 RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVE 227
Query: 257 YINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHL 316
Y+NK+K +HP IF S +K+ I ++V++QWN+ + ENI CFTNNI Q DGGTHL
Sbjct: 228 YLNKNKTPIHPNIFY-----FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 282
Query: 317 TGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVS 376
G R+ +TR +N Y+++ + KK+K+ G+D REGL V+S+K+PDPKF+SQTK+KLVS
Sbjct: 283 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 342
Query: 377 SEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDDIE 436
SEV+ VE+ + + L ++L ENP ++K++ KII+AAR+REAAR+ RE+TR+K +D
Sbjct: 343 SEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 402
Query: 437 LSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKII 496
L KLADCQE++P L ELY+VEGDSAGGS KQGR+R+ QA+LPL+GK+LN+EKARF+K++
Sbjct: 403 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 462
Query: 497 LSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLI 556
S+++ TLI+ LG GI +DE+N +KLRYH IIIMTDAD+DG+HIR LLLTFFYR+MP+++
Sbjct: 463 SSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIV 522
Query: 557 EYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFK 616
E G++YIAQPPLYK+K G E Y++DD ++Y + IA L + + + K
Sbjct: 523 ERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEK 582
Query: 617 LIDKYNKTIEIVHRLKQIIDISILSAIMSDVIL---NLDTRENAEQFAKKIIKKLND--- 670
L+ +YN T ++++R+++ ++L ++ L +L + ++ ++ +LND
Sbjct: 583 LVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQ 642
Query: 671 --SNIEIIVEFDQLNNKY--LLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKII 726
S + V + N + ++ ++ + +Y +D FI +Y+++ ++ + ++
Sbjct: 643 HGSQWKFDVHTNAEQNLFEPIVRVRTHGV-DTDYPLDHEFITGGEYRRICTLGEKLRGLL 701
Query: 727 GKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNP 786
+ I++ GE ++ +F + +++L E+ + QRYKGLGEMNP QLWETTM+P
Sbjct: 702 EEDAFIER--GE--RRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDP 757
Query: 787 MIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 833
R +L+V +KDAI+AD++F TLMGD VE RR FIE NAL A NIDI
Sbjct: 758 ESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804
>sp|P0AES6|GYRB_ECOLI DNA gyrase subunit B OS=Escherichia coli (strain K12) GN=gyrB PE=1
SV=2
Length = 804
Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/827 (48%), Positives = 577/827 (69%), Gaps = 37/827 (4%)
Query: 18 SYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTI 77
SY +SSI++L+GL+AVRKRP MYIGDT DGTGLHH+VFE++DNAIDE+LAG+C +I VTI
Sbjct: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63
Query: 78 YSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIG 137
++DNS+S+ D+GRGIP I ++ SAAE++MT LHAGGKF+ NSYK+SGGLHG+G
Sbjct: 64 HADNSVSVQDDGRGIPTGIHPEEG----VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 119
Query: 138 LSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKI 197
+S VN LS+ L+L I R KIH + +GV Q +P+ + G+T K GT +
Sbjct: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQ------------APLAVTGETEKTGTMV 167
Query: 198 HFWVDEKIFSNI-EFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFVS 256
FW + F+N+ EF YEIL KR+RELSFLN+GV I L D+R K++ F ++GG FV
Sbjct: 168 RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVE 227
Query: 257 YINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHL 316
Y+NK+K +HP IF S +K+ I ++V++QWN+ + ENI CFTNNI Q DGGTHL
Sbjct: 228 YLNKNKTPIHPNIFY-----FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 282
Query: 317 TGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVS 376
G R+ +TR +N Y+++ + KK+K+ G+D REGL V+S+K+PDPKF+SQTK+KLVS
Sbjct: 283 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 342
Query: 377 SEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDDIE 436
SEV+ VE+ + + L ++L ENP ++K++ KII+AAR+REAAR+ RE+TR+K +D
Sbjct: 343 SEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 402
Query: 437 LSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKII 496
L KLADCQE++P L ELY+VEGDSAGGS KQGR+R+ QA+LPL+GK+LN+EKARF+K++
Sbjct: 403 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 462
Query: 497 LSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLI 556
S+++ TLI+ LG GI +DE+N +KLRYH IIIMTDAD+DG+HIR LLLTFFYR+MP+++
Sbjct: 463 SSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIV 522
Query: 557 EYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFK 616
E G++YIAQPPLYK+K G E Y++DD ++Y + IA L + + + K
Sbjct: 523 ERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEK 582
Query: 617 LIDKYNKTIEIVHRLKQIIDISILSAIMSDVIL---NLDTRENAEQFAKKIIKKLND--- 670
L+ +YN T ++++R+++ ++L ++ L +L + ++ ++ +LND
Sbjct: 583 LVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQ 642
Query: 671 --SNIEIIVEFDQLNNKY--LLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKII 726
S + V + N + ++ ++ + +Y +D FI +Y+++ ++ + ++
Sbjct: 643 HGSQWKFDVHTNAEQNLFEPIVRVRTHGV-DTDYPLDHEFITGGEYRRICTLGEKLRGLL 701
Query: 727 GKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNP 786
+ I++ GE ++ +F + +++L E+ + QRYKGLGEMNP QLWETTM+P
Sbjct: 702 EEDAFIER--GE--RRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDP 757
Query: 787 MIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 833
R +L+V +KDAI+AD++F TLMGD VE RR FIE NAL A NIDI
Sbjct: 758 ESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804
>sp|P0AES7|GYRB_ECO57 DNA gyrase subunit B OS=Escherichia coli O157:H7 GN=gyrB PE=3 SV=2
Length = 804
Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/827 (48%), Positives = 577/827 (69%), Gaps = 37/827 (4%)
Query: 18 SYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTI 77
SY +SSI++L+GL+AVRKRP MYIGDT DGTGLHH+VFE++DNAIDE+LAG+C +I VTI
Sbjct: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63
Query: 78 YSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIG 137
++DNS+S+ D+GRGIP I ++ SAAE++MT LHAGGKF+ NSYK+SGGLHG+G
Sbjct: 64 HADNSVSVQDDGRGIPTGIHPEEG----VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 119
Query: 138 LSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKI 197
+S VN LS+ L+L I R KIH + +GV Q +P+ + G+T K GT +
Sbjct: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQ------------APLAVTGETEKTGTMV 167
Query: 198 HFWVDEKIFSNI-EFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFVS 256
FW + F+N+ EF YEIL KR+RELSFLN+GV I L D+R K++ F ++GG FV
Sbjct: 168 RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVE 227
Query: 257 YINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHL 316
Y+NK+K +HP IF S +K+ I ++V++QWN+ + ENI CFTNNI Q DGGTHL
Sbjct: 228 YLNKNKTPIHPNIFY-----FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 282
Query: 317 TGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVS 376
G R+ +TR +N Y+++ + KK+K+ G+D REGL V+S+K+PDPKF+SQTK+KLVS
Sbjct: 283 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 342
Query: 377 SEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDDIE 436
SEV+ VE+ + + L ++L ENP ++K++ KII+AAR+REAAR+ RE+TR+K +D
Sbjct: 343 SEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 402
Query: 437 LSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKII 496
L KLADCQE++P L ELY+VEGDSAGGS KQGR+R+ QA+LPL+GK+LN+EKARF+K++
Sbjct: 403 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 462
Query: 497 LSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLI 556
S+++ TLI+ LG GI +DE+N +KLRYH IIIMTDAD+DG+HIR LLLTFFYR+MP+++
Sbjct: 463 SSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIV 522
Query: 557 EYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFK 616
E G++YIAQPPLYK+K G E Y++DD ++Y + IA L + + + K
Sbjct: 523 ERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEK 582
Query: 617 LIDKYNKTIEIVHRLKQIIDISILSAIMSDVIL---NLDTRENAEQFAKKIIKKLND--- 670
L+ +YN T ++++R+++ ++L ++ L +L + ++ ++ +LND
Sbjct: 583 LVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQ 642
Query: 671 --SNIEIIVEFDQLNNKY--LLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKII 726
S + V + N + ++ ++ + +Y +D FI +Y+++ ++ + ++
Sbjct: 643 HGSQWKFDVHTNAEQNLFEPIVRVRTHGV-DTDYPLDHEFITGGEYRRICTLGEKLRGLL 701
Query: 727 GKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNP 786
+ I++ GE ++ +F + +++L E+ + QRYKGLGEMNP QLWETTM+P
Sbjct: 702 EEDAFIER--GE--RRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDP 757
Query: 787 MIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 833
R +L+V +KDAI+AD++F TLMGD VE RR FIE NAL A NIDI
Sbjct: 758 ESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804
>sp|P43701|GYRB_HAEIN DNA gyrase subunit B OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=gyrB PE=3 SV=1
Length = 806
Score = 789 bits (2037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/833 (48%), Positives = 570/833 (68%), Gaps = 37/833 (4%)
Query: 11 IQDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYC 70
+ +T +Y ASSI++L+GL+AVRKRP MYIGDT DGTGLHH+VFE++DNAIDE+LAG+C
Sbjct: 1 MSETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 60
Query: 71 TKINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKIS 130
+ I VTI+ DNS+S+ D+G GIP+DI ++ SAAE++MT LHAGGKF+ NSYK+S
Sbjct: 61 SDIIVTIHDDNSVSVQDDGGGIPVDIHPEEG----VSAAEVIMTVLHAGGKFDDNSYKVS 116
Query: 131 GGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDT 190
GGLHG+G+S VN LS LQLTI R +H + G Q SP+ +IG+T
Sbjct: 117 GGLHGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQ------------SPLTVIGET 164
Query: 191 NKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGG 250
GT + FW IF+ F Y+IL KR+RELSFLN+GV I LID+R ++ F ++GG
Sbjct: 165 EATGTTVRFWPSSDIFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSEDHFHYEGG 224
Query: 251 TSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQV 310
FV Y+NK+K +HP F + +K+ I ++V++QWN+ NEN+ CFTNNI Q
Sbjct: 225 IQAFVEYLNKNKNPIHPKPFY-----FTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQR 279
Query: 311 DGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQT 370
DGGTHL G R +TR++N Y+E LKK K+ G+D REGL ++S+K+PDPKF+SQT
Sbjct: 280 DGGTHLAGFRGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQT 339
Query: 371 KNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKN 430
K+KLVSSEV+ VE + + + ++L ENP ++K+I +II AAR+REAARK RE+TR+K
Sbjct: 340 KDKLVSSEVKSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKG 399
Query: 431 LIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKA 490
+D L KLADCQEK+P L ELY+VEGDSAGGS K GRDR+ QA+LPL+GK+LN+EKA
Sbjct: 400 ALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKA 459
Query: 491 RFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYR 550
RF+K++ S+++ TLI+ LG GI +DE+N +KLRYH IIIMTDAD+DG+HIR LLLTFFYR
Sbjct: 460 RFDKMLSSQEVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYR 519
Query: 551 KMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIK 610
+MP+LIE GY+YIAQPPLYK+K G E Y++D E E+Y L +A +L N +
Sbjct: 520 QMPELIERGYVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDGAELHISTNAPAMN 579
Query: 611 ENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIM--SDVILNLDTRENA-EQFAKKIIKK 667
F KL+ +YN +++ RL + +L ++ S + + + E+A E + K +++
Sbjct: 580 ALVFEKLVAEYNSVQKLIGRLNRHYPAPVLQGLIYQSPISIEMMKEESAVENWGKSFVEQ 639
Query: 668 LNDSNIE-----IIVEFDQLNNKY--LLNIKKKFLKKKNYIIDINFINNKDYKKLVSIIS 720
L E + +F+ Y ++ ++K + +Y ++ +F++ +Y K+VS+
Sbjct: 640 LTAKETEAHQYSVRTQFNAERQVYEAVITVRKHGI-DTDYFLNFDFVHGNEYAKIVSLNK 698
Query: 721 TFKKIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLW 780
++ +G + + GEK++ +F + + +L E+ + QRYKGLGEMN QLW
Sbjct: 699 QLNGLLEEGAYVIR--GEKVQP--VRSFEQAVEWLVKESRKGLEVQRYKGLGEMNADQLW 754
Query: 781 ETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 833
ETTM+P R +LKV IKDA++AD++F TLMGD VE RR+FIELNAL A N+D+
Sbjct: 755 ETTMDPNSRRMLKVSIKDAVAADQLFTTLMGDEVEPRREFIELNALRA-NLDV 806
>sp|P13364|GYRB_PSEPU DNA gyrase subunit B OS=Pseudomonas putida GN=gyrB PE=3 SV=2
Length = 806
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/830 (48%), Positives = 575/830 (69%), Gaps = 35/830 (4%)
Query: 14 TQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKI 73
++ +Y +SSI++L+GL+AVRKRP MYIGDT DG+GLHH+VFE++DN+IDE+LAG+C I
Sbjct: 2 SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61
Query: 74 NVTIYSDNSISISDNGRGIPIDIKIDDKHKPKR-SAAEIVMTELHAGGKFNKNSYKISGG 132
V I++D SIS+ DNGRGIP+D+ HK + SAAE++MT LHAGGKF+ NSYK+SGG
Sbjct: 62 TVIIHTDESISVRDNGRGIPVDV-----HKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGG 116
Query: 133 LHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNK 192
LHG+G+S VN LS L LT+ R+ KI + +GV Q +P+ ++G++
Sbjct: 117 LHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQ------------APMAVVGESET 164
Query: 193 QGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTS 252
GT IHF + F NI F ++IL KRIRELSFLN+GV I L DER K+E F+++GG
Sbjct: 165 TGTHIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKEEFFKYEGGLR 224
Query: 253 GFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDG 312
FV Y+N +K V+ +F ++++ + ++V++QWN+S+NEN+LCFTNNI Q DG
Sbjct: 225 AFVEYLNTNKTPVNSQVFHFS----VQREDGVGVEVALQWNDSFNENLLCFTNNIPQRDG 280
Query: 313 GTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKN 372
GTHL G RS +TR++N YIE+ KK+K+ G+D REGLT ++S+K+PDPKF+SQTK+
Sbjct: 281 GTHLVGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKD 340
Query: 373 KLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLI 432
KLVSSEV+ VE+ + K DFL ENP E+K + K+I+AAR+REAARK RE+TR+K +
Sbjct: 341 KLVSSEVKTAVEQEMNKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGAL 400
Query: 433 DDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARF 492
D L KLADCQEK+P L ELY+VEGDSAGGS KQGR+RR QA+LPL+GK+LN+EKARF
Sbjct: 401 DIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARF 460
Query: 493 EKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKM 552
+K+I S+++ TLI+ LG GI ++E+N++KLRYH IIIMTDAD+DG+HIR LLLTFF+R++
Sbjct: 461 DKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQL 520
Query: 553 PKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKEN 612
P+L+E GYIYIAQPPLYK+K G E Y++DD E YM + A ++ L E+ +
Sbjct: 521 PELVERGYIYIAQPPLYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLDESAPAVSGV 580
Query: 613 YFFKLIDKYNKTIEIVHRLKQII--DISILSAIMSDVIL-NLDTRENAEQFAKKIIKKLN 669
L++++ ++ + RL ++ +++ + +V L L + + K+ ++LN
Sbjct: 581 QLESLVNEFRSVMKTLKRLSRLYPEELTEHFVYLPEVTLEQLGDHAVMQAWLAKLQERLN 640
Query: 670 DSNIEII-----VEFDQLNNKYLLNIKKKFLKKKNYI-IDINFINNKDYKKLVSIISTFK 723
S + + D+ N +L ++ +YI + +F + DY+ +V+I +
Sbjct: 641 SSQKSGLAYNASLREDKERNVWLPEVEITSHGLASYITFNRDFFGSNDYRTVVNIGAKLS 700
Query: 724 KIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETT 783
++G+G +Q+ GE+ K F + +++L NE QRYKGLGEMNP QLWETT
Sbjct: 701 SLLGEGAYVQR--GERRKAIV--EFKEGLDWLMNETTKRHTIQRYKGLGEMNPDQLWETT 756
Query: 784 MNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 833
M+P +R +LKV I+DAI+AD+IF TLMGD VE RR+FIE NAL N+D
Sbjct: 757 MDPTVRRMLKVTIEDAIAADQIFNTLMGDAVEPRREFIESNALSVSNLDF 806
>sp|Q9I7C2|GYRB_PSEAE DNA gyrase subunit B OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=gyrB PE=3 SV=1
Length = 806
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/830 (49%), Positives = 575/830 (69%), Gaps = 35/830 (4%)
Query: 14 TQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKI 73
++ ++Y +SSI++L+GL+AVRKRP MYIGDT DGTGLHH+VFE++DN+IDE+LAGYC++I
Sbjct: 2 SENNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSEI 61
Query: 74 NVTIYSDNSISISDNGRGIPIDIKIDDKHKPKR-SAAEIVMTELHAGGKFNKNSYKISGG 132
++TI++D SI++ DNGRGIP+DI HK + SAAE++MT LHAGGKF+ N+YK+SGG
Sbjct: 62 SITIHTDESITVRDNGRGIPVDI-----HKEEGVSAAEVIMTVLHAGGKFDDNTYKVSGG 116
Query: 133 LHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNK 192
LHG+G+S VN LS L+LTI R+ K+ + +GV Q P++ +G+T+
Sbjct: 117 LHGVGVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQ------------FPLREVGETDG 164
Query: 193 QGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTS 252
GT++HF + FSNI F ++IL KRIRELSFLN+GV I L DER K+E+F+++GG
Sbjct: 165 SGTEVHFKPSPETFSNIHFSWDILAKRIRELSFLNSGVGILLRDERTGKEELFKYEGGLK 224
Query: 253 GFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDG 312
FV Y+N +K V+ +F + +++ + ++V++QWN+S+NEN+LCFTNNI Q DG
Sbjct: 225 AFVEYLNTNKTAVN-EVFHF---NVQREEDGVGVEVALQWNDSFNENLLCFTNNIPQRDG 280
Query: 313 GTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKN 372
GTHL G RS +TR +N YIE KK KI G+D REGLT ++S+K+PDPKF+SQTK+
Sbjct: 281 GTHLAGFRSALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKD 340
Query: 373 KLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLI 432
KLVSSEV+ VE+ + K DFL ENP E+K + K+I+AAR+REAARK RE+TR+K +
Sbjct: 341 KLVSSEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGAL 400
Query: 433 DDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARF 492
D L KLADCQEK+P L ELYIVEGDSAGGS KQGR+RR QA+LPL+GK+LN+EKARF
Sbjct: 401 DIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARF 460
Query: 493 EKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKM 552
+K++ S+++ TLI+ LG GI ++E+N++KLRYH IIIMTDAD+DG+HIR LLLTFF+R+M
Sbjct: 461 DKMLSSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQM 520
Query: 553 PKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKEN 612
P+LIE GYIYIAQPPLYK+K G E Y++DD E YM + A ++ L E+ +
Sbjct: 521 PELIERGYIYIAQPPLYKVKRGKQEQYIKDDQAMEEYMTQSALEDASLHVNEHAPGLSGA 580
Query: 613 YFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLD--TRENAEQ-FAKKIIKKLN 669
KL+++Y I + RL ++ + + +++D E+A Q + +K +L
Sbjct: 581 ALEKLVNEYRGVIATLKRLSRLYPQELTEHFIYLPTVSVDDLANESAMQGWLEKFQARLT 640
Query: 670 DS-----NIEIIVEFDQLNNKYLLNIKKKFLKKKNYI-IDINFINNKDYKKLVSIISTFK 723
+ + + D+ + +L ++ +Y+ + +F + DY+ + +
Sbjct: 641 AAEKSGLTYKASLREDRERHLWLPEVELVAHGLSSYVTFNRDFFASNDYRSVSLLGDQLN 700
Query: 724 KIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETT 783
++ G +QK GE+ + +A F +++L E QRYKGLGEMNP QLWETT
Sbjct: 701 SLLEDGAYVQK--GERKRPISA--FKDGLDWLMAEGTKRHSIQRYKGLGEMNPEQLWETT 756
Query: 784 MNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 833
M+P +R +LKV I+DAI+AD+IF TLMGD VE RR FIE NAL N+D+
Sbjct: 757 MDPNVRRMLKVTIEDAIAADQIFNTLMGDAVEPRRDFIESNALAVSNLDV 806
>sp|P57126|GYRB_BUCAI DNA gyrase subunit B OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=gyrB PE=3 SV=1
Length = 803
Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/836 (49%), Positives = 573/836 (68%), Gaps = 58/836 (6%)
Query: 19 YSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIY 78
Y +S+I+IL GL+AVRKRP MYIGDT DG+GLHH+VFEI+DN+IDE+L+GYC +I VTI+
Sbjct: 5 YDSSNIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIVDNSIDEALSGYCKEIIVTIH 64
Query: 79 SDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGL 138
SDNS+S+ D+GRGIP DI ++ SAAE+++T LH+GGKF+ SY+ISGGLHG+G+
Sbjct: 65 SDNSVSVKDDGRGIPTDIHPEEN----ISAAEVILTVLHSGGKFDNASYQISGGLHGVGI 120
Query: 139 SCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIH 198
S VN LS L+L I++NKK + +R+G +N P+ IIG T+ GT I
Sbjct: 121 SVVNALSEKLELIIDKNKKKYQQIYRHGKPEN------------PLSIIGTTDTTGTYIR 168
Query: 199 FWVDEKIFSN-IEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFVSY 257
FW K F+N I+F YEIL KR+RELSFLN+ + I L D R K + +KGG F+ +
Sbjct: 169 FWPSYKTFTNNIKFQYEILSKRLRELSFLNSNIAIYLEDNRTSIKNCYHYKGGIKAFIKF 228
Query: 258 INKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLT 317
+N K +H IF K+ I ++++MQWNNS+ ENILCFTNNI Q DGGTHL
Sbjct: 229 LNAKKTPIHTHIFY-----FRSTKDQIELEIAMQWNNSHQENILCFTNNIPQKDGGTHLA 283
Query: 318 GLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSS 377
G RSG+TR +N +IE + KK+K IIGED+REGLT ++SIKIPDPKF+SQTK+KLVSS
Sbjct: 284 GFRSGMTRTLNLHIEREGYNKKNKTTIIGEDVREGLTAIISIKIPDPKFSSQTKDKLVSS 343
Query: 378 EVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDDIEL 437
E R +E +I + L ++L ENP +SK I +KII AA+ REAAR+ RE+ +KK+++D L
Sbjct: 344 EARSVIESLINENLIEYLLENPSDSKFIIQKIINAAKVREAARRAREINKKKSILDLGAL 403
Query: 438 STKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIIL 497
KL+DCQE +P+ E+Y+VEGDSAGGS KQGR+R+ QA+LPL+GK+LN+EK++F+K+IL
Sbjct: 404 PGKLSDCQENDPKFSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKSKFDKMIL 463
Query: 498 SEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIE 557
S+++ +LI+ LG GI ++E+N++KLRYH IIIMTDAD+DGAHIR LLLTFFYR++P+LIE
Sbjct: 464 SQEVASLITALGCGIGKNEYNIDKLRYHYIIIMTDADVDGAHIRTLLLTFFYRQLPELIE 523
Query: 558 YGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIEN----------GD 607
GY+YIAQPPLYK+K G E Y+++D E Y +K A K++ L S +N
Sbjct: 524 KGYVYIAQPPLYKLKKGRKEKYIKNDEEMNTYQIKNALKDLVLKSEDNLIINQKLKKFKK 583
Query: 608 IIKENYFFKLIDKYNKTI-------EIVH--RLKQIIDISILSAIMSDVILNLDTRENAE 658
I+ E ++ ++I K +K E+++ L + DI I+ + + NL+ ++N+
Sbjct: 584 IMSEYHYIQIIMKQSKHYFPKLVFNELIYHNHLHNLKDIEIVKEWIYTLAENLNKKDNSN 643
Query: 659 QFAKKIIKKLNDSNI-EIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVS 717
IK+ D NI E ++ + + + K++FLK K Y++ + +
Sbjct: 644 NHYSIEIKENLDKNIFEPTIKISRYAHYTKYDFKEEFLKSKEYLL------------ITN 691
Query: 718 IISTFKKIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPG 777
+ +FKK V+I+KS G K + N +K +L +++ + QRYKGLGEMNP
Sbjct: 692 LGESFKKYFSDKVLIEKS-GSTYKIDSIKNTWK---WLIKQSKRGLFIQRYKGLGEMNPE 747
Query: 778 QLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 833
QLW TTMNP R +L+V IKDA+SA+ +F TLMG+ VE RR+FIE NAL A+NID+
Sbjct: 748 QLWNTTMNPETRNMLQVTIKDAVSANNLFNTLMGEAVEPRRQFIENNALKAENIDV 803
>sp|P29435|GYRB_BUCAP DNA gyrase subunit B OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=gyrB PE=3 SV=3
Length = 803
Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/829 (49%), Positives = 570/829 (68%), Gaps = 42/829 (5%)
Query: 18 SYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTI 77
+Y +S I+IL GL+AVRKRP MYIGDT DG+GLHH+VFEI+DN+IDE+LAG+C +I V I
Sbjct: 4 TYDSSKIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIVDNSIDEALAGFCKEIKVVI 63
Query: 78 YSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIG 137
+SDNS+SI D+GRGIP DI ++K SAAE++MT LH+GGKF+ SYKISGGLHG+G
Sbjct: 64 HSDNSVSIKDDGRGIPTDIHPEEK----ISAAEVIMTVLHSGGKFDNASYKISGGLHGVG 119
Query: 138 LSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKI 197
+S VN LS L+L I +NKK + +++ NG SP+ IIG T GT I
Sbjct: 120 ISVVNALSEKLELIIYKNKKKYRQQYK------------NGNPESPLCIIGATEITGTYI 167
Query: 198 HFWVDEKIFSN-IEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFVS 256
FW KIF+N +F YEIL KR+RELSFLN+ + I L D R +E + +KGG F+
Sbjct: 168 RFWPSYKIFTNKTQFQYEILSKRLRELSFLNSNILIHLKDNRTNLEEKYHYKGGIKAFIK 227
Query: 257 YINKSKLVVHPTIF--QAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGT 314
++NK+K ++ IF + I KN I +++++QWNNS+ ENILCFTNNI Q DGGT
Sbjct: 228 FLNKNKFPINLNIFYFRCI-------KNQIELEIAIQWNNSHQENILCFTNNIPQKDGGT 280
Query: 315 HLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKL 374
HL+G R+GITR +N +IE + KK+K I GED REGLT ++SIKIPDPKF+SQTK+KL
Sbjct: 281 HLSGFRAGITRTLNLHIEREGYNKKNKTIITGEDTREGLTAIISIKIPDPKFSSQTKDKL 340
Query: 375 VSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDD 434
VSSEV+ +E +I + L ++L ENP ++K I +KII +A+ REAAR+ RE+ +KK +D
Sbjct: 341 VSSEVKSVIESLINENLIEYLLENPIDAKFIIQKIINSAKIREAARRAREINKKKGTLDL 400
Query: 435 IELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEK 494
L KL+DCQE +P+L E+Y+VEGDSAGGS KQGR+R+ QA+LPL+GK+LN++K +F+K
Sbjct: 401 GTLPGKLSDCQENDPKLSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVQKTKFDK 460
Query: 495 IILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPK 554
IILS+++T+LI+ LG I + E++L+KLRY+ IIIMTDAD+DGAHIR LLLTFFYR++P+
Sbjct: 461 IILSQELTSLITALGCSITKSEYSLDKLRYNHIIIMTDADVDGAHIRTLLLTFFYRQLPE 520
Query: 555 LIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKL---ISIENGDIIKE 611
LI+ GY+YIAQPPLYK+K G E Y+++D E +Y +KIA K + + + IIKE
Sbjct: 521 LIKKGYVYIAQPPLYKVKKGKQEKYIKNDEEMNKYQIKIALKEIVIKNKKNENCNKIIKE 580
Query: 612 NYFFKLIDKYNKTIEIVHRLKQIIDISILSA-IMSDVILNLDTRENAEQFAKKIIKKLN- 669
F K++ +N + + K IL+ I + NL + + +K+++KLN
Sbjct: 581 --FQKIVSDFNHIQIKMKKNKNYFPELILNELIYHPRLYNLKNENVVQNWIEKLVEKLNK 638
Query: 670 -DSNIEII---VEFDQLNNKYLLNIK-KKFLKKKNYIIDINFINNKDYKKLVSIISTFKK 724
D N I ++ ++ ++ + +IK ++ Y + +F+ +K+Y + ++ FKK
Sbjct: 639 KDKNNTIYTSKIKRNENDSIFEPSIKLSRYANHTQYDLKNDFLESKEYFLITNLGEKFKK 698
Query: 725 IIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTM 784
I+K GEKI Y N+ + +L E + QRYKGLGEMNP QLW TTM
Sbjct: 699 FQENENFIEK--GEKI--YKINDIKNTLEWLIKETKRGFFVQRYKGLGEMNPDQLWNTTM 754
Query: 785 NPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 833
NP R +L+V IKDAISA+ +F TLMGD VE RRKFI+ NAL A+NIDI
Sbjct: 755 NPETRNMLQVTIKDAISANNLFNTLMGDLVEPRRKFIQKNALKAENIDI 803
>sp|Q89B37|GYRB_BUCBP DNA gyrase subunit B OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=gyrB PE=3 SV=1
Length = 804
Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/828 (50%), Positives = 572/828 (69%), Gaps = 35/828 (4%)
Query: 16 ESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINV 75
+++Y++S+I+IL+GL+AV+KRP MYIG+T DGTGLHH+VFE++DN+IDE+LAG+C I V
Sbjct: 2 KNTYTSSNIKILKGLDAVKKRPGMYIGNTDDGTGLHHMVFEVVDNSIDEALAGFCKNIIV 61
Query: 76 TIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHG 135
TI+ DNSISI D+GRGIP DI ++ SAAE++MT LHAGGKF+ SYK+SGGLHG
Sbjct: 62 TIHDDNSISIQDDGRGIPTDIHDEEG----ISAAEVIMTVLHAGGKFDNTSYKVSGGLHG 117
Query: 136 IGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGT 195
+G+S VN LS+ L+L I R+KKI+Y ++ NG + + IIG T GT
Sbjct: 118 VGVSVVNALSKKLELFIYRDKKIYYQIYK------------NGYPKNTLSIIGYTKITGT 165
Query: 196 KIHFWVDEKIFSNI-EFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGF 254
KI FW + +IF+N+ +F++EIL KR+RELSFLN+ V I L D + E F +GG F
Sbjct: 166 KIRFWPNLEIFTNVTQFNWEILSKRLRELSFLNSNVSIYLDDAKKHINENFYQQGGLKEF 225
Query: 255 VSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGT 314
+ Y+NK+K +H IF S KKNN+ ++++MQWN + ENI C+TNNI Q DGGT
Sbjct: 226 IIYLNKNKKPIHSKIFY-----FSSKKNNVEVEIAMQWNKGFQENIYCYTNNIPQQDGGT 280
Query: 315 HLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKL 374
HL+G RS +TR +N Y+++ ++KK+KI IIG+D REGLT ++SIKI DPKF+SQTKNKL
Sbjct: 281 HLSGFRSALTRTMNNYLDKEGYIKKNKINIIGDDTREGLTAIISIKINDPKFSSQTKNKL 340
Query: 375 VSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDD 434
VSSEV+ +E ++ + L +FL ENP ESK I KIIE++R R AAR+ RE+TRKK +D
Sbjct: 341 VSSEVKSALESLVNEFLMEFLLENPQESKNIVTKIIESSRVRNAARRAREMTRKKGTLDL 400
Query: 435 IELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEK 494
I L KL+DCQE++P L E+Y+VEGDSAGGS KQ R+R+ QA+LPL+GK+LN+EKAR+EK
Sbjct: 401 IGLPGKLSDCQERDPALSEIYLVEGDSAGGSAKQARNRKNQAILPLKGKILNVEKARYEK 460
Query: 495 IILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPK 554
++ S+++TTLI+ LG GI ++E+N EKLRYHRIIIMTDAD+DG+HIR LLLTFFYR MP+
Sbjct: 461 MLSSQEVTTLITALGCGIGKNEYNPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRYMPE 520
Query: 555 LIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDI-IKENY 613
+I+ GY+YIAQPPLYK+ N Y++D E Y L A +N L S + +I IK NY
Sbjct: 521 IIQRGYLYIAQPPLYKVTKNNKTRYIKDKNTMENYKLSTALENTILESNTDKEIKIKCNY 580
Query: 614 FF-KLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILN-----LDTRENAEQFAKKIIKK 667
K+I +Y I ++K ++IL+ ++ LN + F ++ KK
Sbjct: 581 TLKKIISEYKIIQTIFFKIKDNFPLNILNEMLYHPKLNNLNDEVYVNNWINNFVIQLQKK 640
Query: 668 LNDS-NIEIIVEFDQLNNKYLLNIK-KKFLKKKNYIIDINFINNKDYKKLVSIISTFKKI 725
+ + N + F+ + + IK +K + K Y DI FIN+ +Y+K+ S+ +++
Sbjct: 641 SSSTRNYSAHITFNSKDKIFEPLIKIQKNAEVKEYKFDITFINSYEYQKIYSLGKKLQEM 700
Query: 726 IGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMN 785
I K + I+K+ K Y+ NF K L + V+ QRYKGLGEMNP QLW+TTMN
Sbjct: 701 IQKNIHIKKN----NKTYSIKNFQKNFELLIQNSFKNVLIQRYKGLGEMNPEQLWKTTMN 756
Query: 786 PMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 833
P R +LK+ + + + +K+F TLMGD+VE R+ FIEL AL A NIDI
Sbjct: 757 PETRRMLKITLHNIDTTNKLFNTLMGDSVEPRKLFIELYALKASNIDI 804
>sp|Q4UKX5|GYRB_RICFE DNA gyrase subunit B OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=gyrB PE=3 SV=1
Length = 808
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/839 (46%), Positives = 560/839 (66%), Gaps = 61/839 (7%)
Query: 16 ESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINV 75
ESSY A SI++L+GLEAVRKRP MYIGD DG+GLHH+++E++DNAIDESLAGYC + V
Sbjct: 10 ESSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDESLAGYCDLVRV 69
Query: 76 TIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHG 135
T+ + S+++SDNGRGIP++I + SAAE++MT+LHAGGKF++NSYK+SGGLHG
Sbjct: 70 TLNKNGSVTVSDNGRGIPVEIH----QEEGISAAEVIMTQLHAGGKFDQNSYKVSGGLHG 125
Query: 136 IGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIG-DTNKQG 194
+G+S VN LS +L+L I RN K + + F NGI+ +P+ ++ D NK+G
Sbjct: 126 VGVSVVNALSEWLELRIWRNNKEYLIRFN------------NGITEAPLAVVNEDINKKG 173
Query: 195 TKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKK-KEI-FEFKGGTS 252
T++ F+ + F+NIEF + ++ R+REL+FLN+GV I L+D R ++ KE+ F + GG
Sbjct: 174 TEVTFFPSVETFTNIEFDFGTIEHRLRELAFLNSGVKILLVDNRFEEAKEVEFYYTGGIE 233
Query: 253 GFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDG 312
+V YI+++K VHP I N ++ I+++++M WN+SY+ENILCFTNNI Q DG
Sbjct: 234 AYVKYIDRAKHAVHPCIVVNTENT----ESGISLELAMHWNDSYHENILCFTNNIRQRDG 289
Query: 313 GTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKN 372
GTHL+ +S ITR I Y++ KKSK + GED REGL CVLS+K+PDPKF+SQTK+
Sbjct: 290 GTHLSAFKSAITRVITSYLDTTGLNKKSKNDFSGEDTREGLCCVLSVKVPDPKFSSQTKD 349
Query: 373 KLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLI 432
KLVSSEVR VE + + ++ +E+P ESK I KI+EAA +REAARK RELTR+K+ +
Sbjct: 350 KLVSSEVRPVVENAVYTKVLEWFEEHPAESKAIIAKIMEAANAREAARKARELTRRKSAL 409
Query: 433 DDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARF 492
+ L KLADC K+P + EL+IVEGDSAGG+ KQGRD + QA+LPLRGK+LN+E+ARF
Sbjct: 410 EVSNLPGKLADCHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARF 469
Query: 493 EKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKM 552
+K++ S+QI TLI+ LG G++ EF+LEKLRYH++IIMTDAD+DG+HIR LLLTFFYR M
Sbjct: 470 DKMLGSDQIGTLITALGTGVDNREFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHM 529
Query: 553 PKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKEN 612
P+LI GY+YIAQPPLYK+K G E YL+++ + Y++K + L ++ +N
Sbjct: 530 PELINKGYLYIAQPPLYKVKKGAAEFYLKNEQALQDYLIKSTINDATLTLDGKEQLVGDN 589
Query: 613 Y---------FFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKK 663
F L+D +K + I +I ++ ++++ I L++ ++ Q A
Sbjct: 590 LEELINKVVKFNGLLDHASKKFN-----RSITEILAINDLLNNKIFELES-DSRLQKALD 643
Query: 664 IIKKLNDS----NIEII-----VEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKK 714
++ L +S N E++ VEF + + +K+ + K + F+ + K
Sbjct: 644 VLNSLEESPDKTNWEVLKHENKVEFFRFSR----GLKESKILLKEQLESFEFV--QISKL 697
Query: 715 LVSIISTFKKIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEM 774
++I F K + +I KS ++ TA+ +++N + + + QR+KGLGEM
Sbjct: 698 ALTIFDIFDKQLK---LIVKS--QEFGILTAS---QLLNAIIECGKRGISIQRFKGLGEM 749
Query: 775 NPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 833
N QLWETT++P R LL+V++ + A+ IF TLMGD VE RR FI+ NAL+ N+D+
Sbjct: 750 NSNQLWETTLDPAKRTLLQVRVAEVDEAEGIFSTLMGDVVEPRRLFIQANALNVVNLDV 808
>sp|Q9ZCX2|GYRB_RICPR DNA gyrase subunit B OS=Rickettsia prowazekii (strain Madrid E)
GN=gyrB PE=3 SV=1
Length = 807
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/840 (45%), Positives = 558/840 (66%), Gaps = 64/840 (7%)
Query: 16 ESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINV 75
ESSYSA SI++L+GLEAVRKRP MYIGD DG+GLHH+++E++DN+IDE+LAGYC + V
Sbjct: 10 ESSYSADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNSIDEALAGYCDLVQV 69
Query: 76 TIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHG 135
T+ + S+++SDNGRGIP++I ++ SAAE++MT+LHAGGKF++ SYKISGGLHG
Sbjct: 70 TLNKNGSVTVSDNGRGIPVEIHEEEG----ISAAEVIMTQLHAGGKFDQQSYKISGGLHG 125
Query: 136 IGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDT-NKQG 194
+G+S VN LS +L+L I RN K +++ F NGI+ +P+ I+ + +K+G
Sbjct: 126 VGVSVVNALSEWLELRIWRNNKEYFIRFN------------NGITEAPLSIVKENIDKKG 173
Query: 195 TKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIK--KKEIFEFKGGTS 252
T++ F+ F+NIEF + ++ R+REL+FLN+GV I L+D R + KK F + GG
Sbjct: 174 TEVTFFPSVGTFTNIEFDFVTIEHRLRELAFLNSGVKILLVDNRFEEVKKVEFYYTGGIE 233
Query: 253 GFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDG 312
+V YI+++K +HP I + N + ++ I++++++ WN+SY+ENILCFTNNI Q DG
Sbjct: 234 AYVQYIDRAKHAIHPCI---VVNTV-HVESGISLELALHWNDSYHENILCFTNNIRQRDG 289
Query: 313 GTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKN 372
GTHL+ +S ITR I Y++ KK+K + GED REG+ CVLS+K+PDPKF+SQTK+
Sbjct: 290 GTHLSAFKSAITRVITSYLDTTGLNKKTKHDFSGEDTREGICCVLSVKVPDPKFSSQTKD 349
Query: 373 KLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLI 432
KLVSSEVR VE + + ++ +E+P E+K I KI+EAA +REAARK RELTR+K+ +
Sbjct: 350 KLVSSEVRPVVENAVYTKVLEWFEEHPTEAKAIIAKIMEAANAREAARKARELTRRKSAL 409
Query: 433 DDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARF 492
+ L KLADC K+P + EL+IVEGDSAGG+ KQGRD + QA+LPLRGK+LN+E+ARF
Sbjct: 410 EVSNLPGKLADCHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARF 469
Query: 493 EKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKM 552
+K++ S+QI TLI+ LGI +E+ EF+LEKLRYH++IIMTDAD+DG+HIRALLLTFFYR M
Sbjct: 470 DKMLGSDQIGTLITALGISVER-EFSLEKLRYHKVIIMTDADVDGSHIRALLLTFFYRHM 528
Query: 553 PKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKEN 612
P+LI GY+YIAQPPLYK+K G +E YL+++ + Y++K + LI ++ EN
Sbjct: 529 PELINKGYLYIAQPPLYKVKSGASELYLKNEKALQNYLIKSTINDTYLILDGQEQLVGEN 588
Query: 613 Y---------FFKLID----KYNKTIEIVHRLKQIIDISILSAIMSDVILN-LDTRENAE 658
F L+D K+N++I + + + + I S + LD N E
Sbjct: 589 LEDLINKVVKFNNLLDHVSKKFNRSITEILAINDLFNKKIFEPESSARLQKALDILNNLE 648
Query: 659 QFAKKIIKKLNDSNIEII-----VEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYK 713
+ K +N++++ +EF + L K LK++ + + F+ +
Sbjct: 649 ESPDK-------TNLQVLKHENKIEFFHFSRG--LKETKILLKEQLELFE--FVEISQFA 697
Query: 714 KLVSIISTFKKIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGE 773
+SI F K + +I KS K + +++N + + + QR+KGLGE
Sbjct: 698 --LSIFDIFSKRLK---LIVKS-----KAFDILTPSQLLNTIIECGKKGITIQRFKGLGE 747
Query: 774 MNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 833
MN QLWETT++P R LL+V++ + A+ IF TLMGD VE RR FI+ NAL+ N+D+
Sbjct: 748 MNSDQLWETTLDPTKRTLLQVRVAEVDEAEGIFSTLMGDVVEPRRLFIQANALNVMNLDV 807
>sp|P0CAX1|GYRB_CAUCR DNA gyrase subunit B OS=Caulobacter crescentus (strain ATCC 19089 /
CB15) GN=gyrB PE=3 SV=1
Length = 805
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/827 (44%), Positives = 541/827 (65%), Gaps = 38/827 (4%)
Query: 14 TQESS--YSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCT 71
T+E++ Y A SI++L+GL+AVRKRP MYIGDT DG+GLHH+V+E++DNAIDE+LAG+ T
Sbjct: 3 TEEAAAQYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 62
Query: 72 KINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKR-SAAEIVMTELHAGGKFNKNSYKIS 130
K+ V + +D S++++D+GRGIP+D+ H+ + SAAE++MT+LHAGGKF++NSYK+S
Sbjct: 63 KVQVILNADGSVTVTDDGRGIPVDM-----HEGEGVSAAEVIMTQLHAGGKFDQNSYKVS 117
Query: 131 GGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDT 190
GGLHG+G+S VN LS +L+L I+RN K+H M F G + ++ SP++ G
Sbjct: 118 GGLHGVGVSVVNALSDWLELLIHRNGKVHQMRFERG----DAVTSLKVTGDSPVRTEGPK 173
Query: 191 NKQ---GTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKK--KEIF 245
+ GT++ F+ + F+ IEF + L+ R+REL+FLN+GV I D R + +E
Sbjct: 174 AGETLTGTEVTFFPSKDTFAFIEFDRKTLEHRLRELAFLNSGVTIWFKDHRDVEPWEEKL 233
Query: 246 EFKGGTSGFVSYINKSK--LVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCF 303
++GG FV +++K+K L+ P + + K+ + ID+++ WN+SY+E +LCF
Sbjct: 234 FYEGGIEAFVRHLDKAKTPLLKAPIAVKGV-------KDKVEIDLALWWNDSYHEQMLCF 286
Query: 304 TNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPD 363
TNNI Q DGGTHL+ R+ +TR I Y E + LKK K+ + GED REGLTCVLS+K+PD
Sbjct: 287 TNNIPQRDGGTHLSAFRAALTRIITSYAESSGILKKEKVSLGGEDSREGLTCVLSVKVPD 346
Query: 364 PKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTR 423
PKF+SQTK+KLVSSEVR VE ++ + L + +E+P E+K I KI EAA +REAARK R
Sbjct: 347 PKFSSQTKDKLVSSEVRPAVEGLVSEGLSTWFEEHPNEAKAIVTKIAEAAAAREAARKAR 406
Query: 424 ELTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGK 483
ELTR+K+ +D L KLADC E++P E++IVEGDSAGGS KQ R+R QAVLPLRGK
Sbjct: 407 ELTRRKSALDITSLPGKLADCSERDPAKSEIFIVEGDSAGGSAKQARNRDNQAVLPLRGK 466
Query: 484 VLNIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRAL 543
+LN+E+ARF+K++ S+QI TLI+ LG GI +D+FN +K+RYH+I++MTDAD+DGAHIR L
Sbjct: 467 ILNVERARFDKMLSSDQIGTLITALGAGIGRDDFNPDKVRYHKIVLMTDADVDGAHIRTL 526
Query: 544 LLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISI 603
LLTFFYR+MP+LIE GYIYIAQPPLYK G + YL+DD E + +++ +L +
Sbjct: 527 LLTFFYRQMPELIERGYIYIAQPPLYKASKGKSSRYLKDDAEMDAFLVDEGVDGAEL-DL 585
Query: 604 ENGDIIKENYFFKLIDKYNKTIEIVHRL-KQIIDISILSAIMSDVILNLDTRENAEQFAK 662
+G+ + L+ + RL + +I A +S + L NA A
Sbjct: 586 ASGERMTGQDLLALVQTCRSAKANIDRLAARAPATAIEQAALSGL---LGESPNAAAAAT 642
Query: 663 KIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTF 722
++ + + E + + ++ + ++ + ++ ++D ++ D ++L
Sbjct: 643 RLDLYAEEGDGPWSGE--RGDTGFVFSRVRRGVSER-VVLDDVLLHAADARRLAERAVKL 699
Query: 723 KKIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWET 782
+I I ++ K K T ++N + + + QRYKGLGEMNP QLWET
Sbjct: 700 TEIFSGRAIFRR----KDKSTTVRGPLDLVNAVLDAGRKGLTIQRYKGLGEMNPDQLWET 755
Query: 783 TMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAK 829
T++ R LL+V++ A AD +F LMGD VE RR+FI+ NAL A+
Sbjct: 756 TLDAEARTLLQVRVNHADDADDMFSRLMGDLVEPRREFIQENALDAE 802
>sp|B8GXQ0|GYRB_CAUCN DNA gyrase subunit B OS=Caulobacter crescentus (strain NA1000 /
CB15N) GN=gyrB PE=3 SV=1
Length = 805
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/827 (44%), Positives = 541/827 (65%), Gaps = 38/827 (4%)
Query: 14 TQESS--YSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCT 71
T+E++ Y A SI++L+GL+AVRKRP MYIGDT DG+GLHH+V+E++DNAIDE+LAG+ T
Sbjct: 3 TEEAAAQYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 62
Query: 72 KINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKR-SAAEIVMTELHAGGKFNKNSYKIS 130
K+ V + +D S++++D+GRGIP+D+ H+ + SAAE++MT+LHAGGKF++NSYK+S
Sbjct: 63 KVQVILNADGSVTVTDDGRGIPVDM-----HEGEGVSAAEVIMTQLHAGGKFDQNSYKVS 117
Query: 131 GGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDT 190
GGLHG+G+S VN LS +L+L I+RN K+H M F G + ++ SP++ G
Sbjct: 118 GGLHGVGVSVVNALSDWLELLIHRNGKVHQMRFERG----DAVTSLKVTGDSPVRTEGPK 173
Query: 191 NKQ---GTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKK--KEIF 245
+ GT++ F+ + F+ IEF + L+ R+REL+FLN+GV I D R + +E
Sbjct: 174 AGETLTGTEVTFFPSKDTFAFIEFDRKTLEHRLRELAFLNSGVTIWFKDHRDVEPWEEKL 233
Query: 246 EFKGGTSGFVSYINKSK--LVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCF 303
++GG FV +++K+K L+ P + + K+ + ID+++ WN+SY+E +LCF
Sbjct: 234 FYEGGIEAFVRHLDKAKTPLLKAPIAVKGV-------KDKVEIDLALWWNDSYHEQMLCF 286
Query: 304 TNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPD 363
TNNI Q DGGTHL+ R+ +TR I Y E + LKK K+ + GED REGLTCVLS+K+PD
Sbjct: 287 TNNIPQRDGGTHLSAFRAALTRIITSYAESSGILKKEKVSLGGEDSREGLTCVLSVKVPD 346
Query: 364 PKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTR 423
PKF+SQTK+KLVSSEVR VE ++ + L + +E+P E+K I KI EAA +REAARK R
Sbjct: 347 PKFSSQTKDKLVSSEVRPAVEGLVSEGLSTWFEEHPNEAKAIVTKIAEAAAAREAARKAR 406
Query: 424 ELTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGK 483
ELTR+K+ +D L KLADC E++P E++IVEGDSAGGS KQ R+R QAVLPLRGK
Sbjct: 407 ELTRRKSALDITSLPGKLADCSERDPAKSEIFIVEGDSAGGSAKQARNRDNQAVLPLRGK 466
Query: 484 VLNIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRAL 543
+LN+E+ARF+K++ S+QI TLI+ LG GI +D+FN +K+RYH+I++MTDAD+DGAHIR L
Sbjct: 467 ILNVERARFDKMLSSDQIGTLITALGAGIGRDDFNPDKVRYHKIVLMTDADVDGAHIRTL 526
Query: 544 LLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISI 603
LLTFFYR+MP+LIE GYIYIAQPPLYK G + YL+DD E + +++ +L +
Sbjct: 527 LLTFFYRQMPELIERGYIYIAQPPLYKASKGKSSRYLKDDAEMDAFLVDEGVDGAEL-DL 585
Query: 604 ENGDIIKENYFFKLIDKYNKTIEIVHRL-KQIIDISILSAIMSDVILNLDTRENAEQFAK 662
+G+ + L+ + RL + +I A +S + L NA A
Sbjct: 586 ASGERMTGQDLLALVQTCRSAKANIDRLAARAPATAIEQAALSGL---LGESPNAAAAAT 642
Query: 663 KIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTF 722
++ + + E + + ++ + ++ + ++ ++D ++ D ++L
Sbjct: 643 RLDLYAEEGDGPWSGE--RGDTGFVFSRVRRGVSER-VVLDDVLLHAADARRLAERAVKL 699
Query: 723 KKIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWET 782
+I I ++ K K T ++N + + + QRYKGLGEMNP QLWET
Sbjct: 700 TEIFSGRAIFRR----KDKSTTVRGPLDLVNAVLDAGRKGLTIQRYKGLGEMNPDQLWET 755
Query: 783 TMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAK 829
T++ R LL+V++ A AD +F LMGD VE RR+FI+ NAL A+
Sbjct: 756 TLDAEARTLLQVRVNHADDADDMFSRLMGDLVEPRREFIQENALDAE 802
>sp|Q1RHT8|GYRB_RICBR DNA gyrase subunit B OS=Rickettsia bellii (strain RML369-C) GN=gyrB
PE=3 SV=1
Length = 808
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/830 (45%), Positives = 557/830 (67%), Gaps = 43/830 (5%)
Query: 16 ESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINV 75
ESSY A SI++L+GLEAVRKRP MYIGD DG+GLHH+++E++DNAIDE+LAGYC + V
Sbjct: 10 ESSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDEALAGYCDLVRV 69
Query: 76 TIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHG 135
+ + S+++SDNGRGIP++I + SAAE++MT+LHAGGKF++NSYK+SGGLHG
Sbjct: 70 VLNKNGSVTVSDNGRGIPVEIH----EEEGISAAEVIMTQLHAGGKFDQNSYKVSGGLHG 125
Query: 136 IGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGD-TNKQG 194
+G+S VN LS +L+L I RN H + F NGI+ +P+ ++ + +K+G
Sbjct: 126 VGVSVVNALSDWLELRIWRNNTEHLIRFN------------NGITEAPLAVVKENVDKKG 173
Query: 195 TKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKK-KEI-FEFKGGTS 252
T++ F+ + F+NIEF + I++ R+REL+FLN+GV I L D R ++ KE+ F + GG
Sbjct: 174 TEVTFFPSVETFTNIEFDFSIIEHRLRELAFLNSGVKILLTDNRFEEVKEVEFYYTGGIE 233
Query: 253 GFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDG 312
+V Y++++K VH I N ++ I+++++M WN+SY+ENILCFTNNI Q DG
Sbjct: 234 AYVKYLDRAKHAVHSCIVVNADNT----ESGISLELAMHWNDSYHENILCFTNNIRQRDG 289
Query: 313 GTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKN 372
GTHL+ +SG+TR I Y+E KK+K GED REG+ CVLS+K+PDPKF+SQTK+
Sbjct: 290 GTHLSAFKSGLTRVITAYLENTGLNKKAKNAFSGEDTREGICCVLSVKVPDPKFSSQTKD 349
Query: 373 KLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLI 432
KLVSSEVR VE + + ++ +E+P ++KLI KI+EAA +REAARK RELTR+K+++
Sbjct: 350 KLVSSEVRPIVENAVYTKVLEWFEEHPADAKLIINKIMEAANAREAARKARELTRRKSVL 409
Query: 433 DDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARF 492
+ L KLADC K+P + EL+IVEGDSAGG+ KQGRD + QA+LPLRGK+LN+E+ARF
Sbjct: 410 EVSNLPGKLADCHAKDPAVSELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARF 469
Query: 493 EKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKM 552
+K++ S+QI TLI+ LG G++ EF+LEKLRYH++IIMTDAD+DG+HIR LLLTFFYR M
Sbjct: 470 DKMLGSDQIGTLITALGTGVDNREFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHM 529
Query: 553 PKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKEN 612
P+LI GY+YIAQPPLYK+K G +E YL+++ + Y++K A + L +++N + +
Sbjct: 530 PELINKGYLYIAQPPLYKVKKGASELYLKNEQALQDYLVKSAISDATL-TLDNKEQLTNE 588
Query: 613 YFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTREN-AEQFAKKIIKKLND- 670
+L+ K K ++ + + SI + + +LN +N ++ KK + LN
Sbjct: 589 NLEELMSKVIKFNSLLDHASKKFNRSITEILAINDLLNNKIFDNESDSRLKKALNALNSL 648
Query: 671 ------SNIEIIVEFDQLN-NKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFK 723
++ E++ +++ ++ +K++ + + + FIN K ++I F
Sbjct: 649 EQSPDKTDWEVLKHENKIEFFRFSRGLKERKILLREQLESFEFINIS--KLALTIFDVFN 706
Query: 724 KIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETT 783
K Q + K +++ ++N + + + QR+KGLGEMN QLW+TT
Sbjct: 707 K--------QLKLVVKNQEFDILTPSILLNTIIECGKKGISVQRFKGLGEMNSDQLWDTT 758
Query: 784 MNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 833
++P R L++V++ + A+ IF TLMGD VE RR+FI+ NAL+ N+D+
Sbjct: 759 LDPKKRTLMQVRVAEVDEAEGIFSTLMGDVVEPRRQFIQSNALNVVNLDV 808
>sp|Q68WF6|GYRB_RICTY DNA gyrase subunit B OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=gyrB PE=3 SV=1
Length = 807
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/839 (46%), Positives = 557/839 (66%), Gaps = 62/839 (7%)
Query: 16 ESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINV 75
ESSYSA SI++L+GLEAVRKRP MYIGD DG+GLHH+++E++DN+IDE+LAGYC I V
Sbjct: 10 ESSYSADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNSIDEALAGYCDLIRV 69
Query: 76 TIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHG 135
T+ + S+++SDNGRGIP++I ++ SAAE++MT+LHAGGKF+++SYKISGGLHG
Sbjct: 70 TLNKNGSVTVSDNGRGIPVEIHEEEG----ISAAEVIMTQLHAGGKFDQHSYKISGGLHG 125
Query: 136 IGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDT-NKQG 194
+G+S VN LS +L+L I RN K +++ F NGI+ +P+ I+ + +K+G
Sbjct: 126 VGVSVVNALSEWLELRIWRNNKEYFIRFN------------NGITEAPLSIVKENIDKKG 173
Query: 195 TKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDER---IKKKEIFEFKGGT 251
T++ F+ IF+NIEF + ++ R+REL+FLN+GV I LID R +KK E F + GG
Sbjct: 174 TEVTFFPSVGIFTNIEFDFVTIEHRLRELAFLNSGVKILLIDNRFEEVKKVEFF-YTGGI 232
Query: 252 SGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVD 311
+V YI+++K +HP I ++ I++++++ WN+SY+ENILCFTNNI Q D
Sbjct: 233 EAYVQYIDRAKHAIHPCIVV----NTEHVESGISLELAIHWNDSYHENILCFTNNIRQRD 288
Query: 312 GGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTK 371
GGTHL+ +S ITR I Y++ KK+K + GED REG+ CVLS+K+PDPKF+SQTK
Sbjct: 289 GGTHLSAFKSAITRVITSYLDTTGLNKKTKHDFSGEDTREGICCVLSVKVPDPKFSSQTK 348
Query: 372 NKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNL 431
+KLVSSEVR VE + + ++ +E+P E+K I KI+EAA +REAARK RELTR+K+
Sbjct: 349 DKLVSSEVRPVVENAVYTKVLEWFEEHPIEAKAIIAKIMEAANAREAARKARELTRRKSA 408
Query: 432 IDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKAR 491
++ L KLADC K+P + EL+IVEGDSAGG+ KQGRD + QA+LPLRGK+LN+E+AR
Sbjct: 409 LEVSNLPGKLADCHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERAR 468
Query: 492 FEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRK 551
F+K++ SEQI TLI+ LGI +E+ EF+LEKLRYH++IIMTDAD+DG+HIR LLLTFFYR
Sbjct: 469 FDKMLSSEQIGTLITALGISVER-EFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRH 527
Query: 552 MPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKE 611
MP+LI GY+YIAQPPLYK+K G +E YL+++ + Y++K + KLI +I
Sbjct: 528 MPELINKGYLYIAQPPLYKVKSGASELYLKNEQALQNYLIKSTINDTKLILDGQEQLIGY 587
Query: 612 NYFFKLIDKYNKTIE---IVHRLKQIIDISILSAIMSDVILNLDTRENAE----QFAKKI 664
N L D NK ++ ++ R + + SI + + + N E Q A +
Sbjct: 588 N----LEDLINKVVQFNCLLDRASKKFNRSITEILAINDLFNKKIFEPESGSRLQKALDV 643
Query: 665 IKKLNDS----NIEII-----VEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYK-K 714
+ L +S N++++ +EF + L K LK++ + + F+ +
Sbjct: 644 LNNLEESPDKTNLQVLKHENRIEFFHFSRG--LKNTKILLKEQLELFE--FVEISQFALS 699
Query: 715 LVSIISTFKKIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEM 774
+ I S K+I KG K++ +++N + + + QR+KGLGEM
Sbjct: 700 IFDIFSKRLKLIVKG-----------KEFDVVTPSQLLNTIIECGKKGITIQRFKGLGEM 748
Query: 775 NPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 833
N QLW+TT++P R LL+V++ + A+ IF TLMGD VE RR FI+ NAL+ N+DI
Sbjct: 749 NSDQLWDTTLDPTKRTLLQVRVSEVDEAEGIFSTLMGDVVEPRRLFIQANALNVMNLDI 807
>sp|Q92H87|GYRB_RICCN DNA gyrase subunit B OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=gyrB PE=3 SV=1
Length = 807
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/830 (45%), Positives = 553/830 (66%), Gaps = 44/830 (5%)
Query: 16 ESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINV 75
ESSY A SI++L+GLEAVRKRP MYIGD DG+GLHH+++E++DNAIDESLAGYC + V
Sbjct: 10 ESSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDESLAGYCDLVRV 69
Query: 76 TIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHG 135
T+ + S+++SDNGRGIP++I ++ SAAE++MT+LHAGGKF++N+YK++GGLHG
Sbjct: 70 TLNKNGSVTVSDNGRGIPVEIHGEEG----ISAAEVIMTQLHAGGKFDQNAYKVAGGLHG 125
Query: 136 IGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDT-NKQG 194
+G+S VN LS +L+L I RN K + M F NGI+ +P+ ++ + +K+G
Sbjct: 126 VGVSVVNALSEWLELRIWRNNKEYLMRFN------------NGITEAPLAVVKENIDKKG 173
Query: 195 TKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKK-KEI-FEFKGGTS 252
T++ F+ + F+NIEF + ++ R+REL+FLN+GV I L+D R ++ KE+ F + GG
Sbjct: 174 TEVTFFPSVETFTNIEFDFGTIEHRLRELAFLNSGVKILLVDNRFEEVKEVEFYYTGGIE 233
Query: 253 GFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDG 312
+V YI+++K +HP I N ++ I+++++M WN+SY+ENILCFTNNI Q DG
Sbjct: 234 AYVKYIDRAKHAIHPCIVVNTENA----ESGISLELAMHWNDSYHENILCFTNNIRQRDG 289
Query: 313 GTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKN 372
GTHL+ +S ITR I Y++ KK+K GED REGL CVLS+K+PDPKF+SQTK+
Sbjct: 290 GTHLSAFKSAITRVITSYLDTTGLNKKAKNYFSGEDTREGLCCVLSVKVPDPKFSSQTKD 349
Query: 373 KLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLI 432
KLVSSEVR VE + + ++ +E+P E+K I KI+EAA +REAARK RELTR+K+ +
Sbjct: 350 KLVSSEVRPVVENAVYTKVLEWFEEHPAEAKAIIAKIMEAANAREAARKARELTRRKSAL 409
Query: 433 DDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARF 492
+ L KLADC K+P + EL+IVEGDSAGG+ KQGRD + QA+LPLRGK+LN+E+ARF
Sbjct: 410 EVSNLPGKLADCHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARF 469
Query: 493 EKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKM 552
+K++ S+QI TLI+ LGI +E+ EF+LEKLRYH++IIMTDAD+DG+HIR LLLTFFYR M
Sbjct: 470 DKMLGSDQIGTLITALGISVER-EFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHM 528
Query: 553 PKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKEN 612
P+LI GY+YIAQPPLYK+K G E YL+++ + Y++K + LI + ++ +N
Sbjct: 529 PELINKGYLYIAQPPLYKVKKGAAEFYLKNEQALQDYLIKSTINDATLILDDKERLVGDN 588
Query: 613 YFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQF----AKKIIKKL 668
+LI+K K ++ + + SI + + +LN E A ++ L
Sbjct: 589 -LEELINKVVKFNGLLDHASKKFNRSITEILAINDLLNNKIFEPESDLRLKKALDVLNSL 647
Query: 669 NDS----NIEIIVEFDQLN-NKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFK 723
DS N E++ +++ ++ +K+ + K + F+ + ++I F
Sbjct: 648 EDSPDKTNWEVLKHENKIEFFRFSRGLKESKILLKEQLESFEFVQISKFA--LTIFDIFS 705
Query: 724 KIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETT 783
K Q + K +++ +++N + + + QR+KGLGEMN QLWETT
Sbjct: 706 K--------QLKLIVKSQEFDILTPSQLLNTIIECGKRGINIQRFKGLGEMNSDQLWETT 757
Query: 784 MNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 833
++P R LL+V++ + A+ IF TLMGD VE RR FI+ NAL+ N+D+
Sbjct: 758 LDPTKRTLLQVRVAEIDEAEGIFSTLMGDVVEPRRLFIQANALNVVNLDV 807
>sp|Q9Z8R3|GYRB_CHLPN DNA gyrase subunit B OS=Chlamydia pneumoniae GN=gyrB PE=3 SV=1
Length = 805
Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/849 (43%), Positives = 518/849 (61%), Gaps = 73/849 (8%)
Query: 13 DTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTK 72
D +E +Y AS+I +LEGL+AVR+RP MYIGDT TGLHHLV+E++DN+IDE++AGYC++
Sbjct: 2 DPKEKNYDASAITVLEGLQAVRERPGMYIGDTGI-TGLHHLVYEVVDNSIDEAMAGYCSR 60
Query: 73 INVTIYSDNSISISDNGRGIPIDIKIDDKHKPKR--SAAEIVMTELHAGGKFNKNSYKIS 130
I+V I D I I DNGRGIPI++ + K R SA E+V+T LHAGGKF+K+SYK+S
Sbjct: 61 IDVRILEDGGIVIVDNGRGIPIEVHERESAKQGREVSALEVVLTVLHAGGKFDKDSYKVS 120
Query: 131 GGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDT 190
GGLHG+G+SCVN LS L T+ ++KK + MEF GI V+P++ + +
Sbjct: 121 GGLHGVGVSCVNALSEKLVATVFKDKKCYQMEFS------------RGIPVTPLQYVSVS 168
Query: 191 NKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKK--KEIFEFK 248
++QGT+I F+ D KIFS F IL KR+REL+FLN G+ I D+R K F ++
Sbjct: 169 DRQGTEIVFYPDPKIFSTCTFDRSILMKRLRELAFLNRGITIVFEDDRDVSFDKVTFFYE 228
Query: 249 GGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNIL 308
GG FVSY+N++K + G ++ + I + ++QWN+ Y+E + + NNI
Sbjct: 229 GGIQSFVSYLNQNKESLFSEPIYICGTRVGDD-GEIEFEAALQWNSGYSELVYSYANNIP 287
Query: 309 QVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNS 368
GGTHLTG + +TR IN YI+ + K +K+ + GEDIREGLT V+S+K+P+P+F
Sbjct: 288 TRQGGTHLTGFSTALTRVINTYIKAHNLAKNNKLALTGEDIREGLTAVISVKVPNPQFEG 347
Query: 369 QTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRK 428
QTK KL +S+V ++++ + L F +ENP +++I +K+ AA++REAA+K RELT +
Sbjct: 348 QTKQKLGNSDVSSVAQQVVGEALTIFFEENPQIARMIVDKVFVAAQAREAAKKARELTLR 407
Query: 429 KNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIE 488
K+ +D L KL DC EK+PE CE+YIVEGDSAGGS KQGRDRRFQA+LP+RGK+LN+E
Sbjct: 408 KSALDSARLPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVE 467
Query: 489 KARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFF 548
KAR +KI +++I T+I+ LG GI D FNL KLRY RIIIMTDAD+DG+HIR LLLTFF
Sbjct: 468 KARLQKIFQNQEIGTIIAALGCGIGADNFNLSKLRYRRIIIMTDADVDGSHIRTLLLTFF 527
Query: 549 YRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYML-------KIAFKNVK-- 599
YR M LIE +YIAQPPLYK+ + Y+ + E + Y+L I FK+ +
Sbjct: 528 YRHMTALIENECVYIAQPPLYKVSKKKDFRYILSEKEMDSYLLMLGTNESSILFKSTERE 587
Query: 600 -----LISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIID-----ISILSAIMSDVIL 649
L S N + E++ L K E + K+ I ++ + + L
Sbjct: 588 LRGEALESFINVILDVESFINTLEKKAIPFSEFLEMYKEGIGYPLYYLAPATGMQGGRYL 647
Query: 650 NLDTRENAEQFAKKIIKKLNDSNIEIIVEFDQLNNK---YLLNIKKKFLKKKNYIIDINF 706
D E E A++ K + + F + N+ Y L+I + +KN I+
Sbjct: 648 YSD-EEKEEALAQEETHKFKIIELYKVAVFVDIQNQLKEYGLDISSYLIPQKNEIV---- 702
Query: 707 INNKDYKKLVSIISTFKKIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQ 766
I N+D Y+ ++INYL+N + Q
Sbjct: 703 IGNEDSPSC--------------------------NYSCYTLEEVINYLKNLGRKGIEIQ 736
Query: 767 RYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNAL 826
RYKGLGEMN QLW+TTMNP R L+ V +KDA+ AD IF LMG+ V RR+FIE +AL
Sbjct: 737 RYKGLGEMNADQLWDTTMNPEQRTLIHVSLKDAVEADHIFTMLMGEEVPPRREFIESHAL 796
Query: 827 HAK--NIDI 833
+ N+DI
Sbjct: 797 SIRINNLDI 805
>sp|O87667|GYRB_CAMJE DNA gyrase subunit B OS=Campylobacter jejuni subsp. jejuni serotype
O:2 (strain NCTC 11168) GN=gyrB PE=3 SV=2
Length = 769
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/828 (42%), Positives = 513/828 (61%), Gaps = 70/828 (8%)
Query: 16 ESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINV 75
+ +Y AS+I++L+GLEAVRKRP MYIGDT+ G GLHH+++E++DN+IDE++AG+C I+V
Sbjct: 2 QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTIDV 60
Query: 76 TIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHG 135
I ++ S +SDNGRGIP+D+ ++ P + +V+T LHAGGKF+K++YK+SGGLHG
Sbjct: 61 EITTEGSCIVSDNGRGIPVDMH-PTENMPTLT---VVLTVLHAGGKFDKDTYKVSGGLHG 116
Query: 136 IGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGT 195
+G+S VN LS+ L T+ RN +I+ EF G + +S +IG + K GT
Sbjct: 117 VGVSVVNALSKKLVATVERNGEIYRQEFSEGKV------------ISEFGVIGKSKKTGT 164
Query: 196 KIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFV 255
I FW D++IF EF YEIL KR REL++LN + I D R+ K E F F+GG S FV
Sbjct: 165 TIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGKHESFHFEGGISQFV 224
Query: 256 SYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTH 315
+ +NK + + F S + ++N++V++ +N++Y+EN+L F NNI DGGTH
Sbjct: 225 TDLNKKEALTKAIFF-------SVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTH 277
Query: 316 LTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLV 375
G R G+TR I+ YIE N ++ +I G+D+REGL ++S+K+P+P+F QTK KL
Sbjct: 278 EAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKGKLG 337
Query: 376 SSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDDI 435
S+ VR V + + L + +ENP E+K I K + AAR REAA+K RELTRKK +
Sbjct: 338 STYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVG 397
Query: 436 ELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKI 495
L KLADCQ K+P E+Y+VEGDSAGGS KQGR+R FQA+LPLRGK+LN+EKAR +KI
Sbjct: 398 TLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKI 457
Query: 496 ILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKL 555
+ SEQI +I+ G GI +D F+L KLRYH+IIIMTDAD+DG+HI+ LLLTFF+R M +L
Sbjct: 458 LKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNEL 516
Query: 556 IEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFF 615
+ G+IY+AQPPLY K + YL+D+ Y+++ + + I D+ +
Sbjct: 517 VANGHIYLAQPPLYLYKKAKKQIYLKDEKALSEYLIETGIEGLNYEGIGMNDLKD---YL 573
Query: 616 KLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSNIEI 675
K++ Y AI+ D L+ R N + +I+ N
Sbjct: 574 KIVAAYR-------------------AILKD----LEKRFNVISVIRYMIENSN------ 604
Query: 676 IVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVIIQKS 735
+ NN+ L ++ K+FL+ + + I ++IN + + V + ++++ +
Sbjct: 605 ---LVKGNNEELFSVIKQFLETQGHNILNHYINENEIRAFVQTQNGLEELVINEELFTHP 661
Query: 736 IGE-------KIKKYTAN---NFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMN 785
+ E KIK + + +++ + A+ QRYKGLGEMNP QLWETTM+
Sbjct: 662 LYEEASYIFDKIKDRSLEFDKDILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMD 721
Query: 786 PMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 833
P +R LLK+ I+DA SA+ F MGD VE RR +I+ +A K++D+
Sbjct: 722 PSVRRLLKITIEDAQSANDTFNLFMGDEVEPRRDYIQAHAKDVKHLDV 769
>sp|O67137|GYRB_AQUAE DNA gyrase subunit B OS=Aquifex aeolicus (strain VF5) GN=gyrB PE=3
SV=1
Length = 792
Score = 634 bits (1634), Expect = e-180, Method: Compositional matrix adjust.
Identities = 350/825 (42%), Positives = 516/825 (62%), Gaps = 40/825 (4%)
Query: 12 QDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCT 71
Q Y+A +I+ + GLE VR RP MYIGD + GLHHL++EILDNA+DE++AGY
Sbjct: 5 QSQTPQEYTAEAIKAVSGLEHVRLRPAMYIGDIGE-RGLHHLIWEILDNAVDEAVAGYAR 63
Query: 72 KINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISG 131
I+VTI+ DNS+++ D+GRGIP+DI + KP A E+V T L AGGKF K Y SG
Sbjct: 64 NISVTIHRDNSVTVEDDGRGIPVDIH-PETGKP---AVEMVFTMLGAGGKFEKKVYTYSG 119
Query: 132 GLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTN 191
GLHG+G S VN LS +L + + R+ KI+ M F+ G + V P+ ++G+T
Sbjct: 120 GLHGVGASVVNALSEWLIVEVYRDGKIYRMAFKRGEV------------VEPLHVVGETK 167
Query: 192 KQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGT 251
K+GTK+ F D +IF E ++I++KR+REL++LN V L DER+ K I++F G
Sbjct: 168 KRGTKVSFKPDPEIFETTEIKFDIVEKRVRELAYLNPEVKFELTDERLGKHLIYKFDRGI 227
Query: 252 SGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVD 311
V Y+N+ K + I +I +K + +D++ Q+ Y E I F NNI V+
Sbjct: 228 EELVKYLNEGKEPLFKDII-----RIQGEKEGVIVDIAFQYVKDYKERIESFVNNIKTVE 282
Query: 312 GGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTK 371
GGTH+TG RSG+++A+ + + + K+ K GED+REGLT V++ K+P+P+F QTK
Sbjct: 283 GGTHVTGFRSGLSKAVIRMAQGLKLAKELKKSFTGEDVREGLTAVVACKVPNPQFEGQTK 342
Query: 372 NKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNL 431
KL + V++ VE I L + ++ K I EK IEAA +REAA+K +EL R+K+
Sbjct: 343 TKLGNQNVKQIVESITYDFLTSYFEKKRDVLKAIVEKAIEAALAREAAKKAKELVRRKSP 402
Query: 432 IDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKAR 491
+++ L KLADC E +P CE+++VEGDSAGGS KQ RDRR+QA+LPLRGK++N+EKAR
Sbjct: 403 LEEGVLPGKLADCSETDPSKCEIFLVEGDSAGGSAKQARDRRYQAILPLRGKIINVEKAR 462
Query: 492 FEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRK 551
+K++ +++I ++S LG GI +D +L+KLRYH+II+MTDAD+DG+HIR LLLTFFYR
Sbjct: 463 IDKVLSNDEIKAIVSALGCGIGED-LDLKKLRYHKIILMTDADVDGSHIRTLLLTFFYRF 521
Query: 552 MPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKE 611
MPKL+E GY+YIA+PPLY++K G E Y++DD E E ++L + +L+ + E
Sbjct: 522 MPKLVEEGYVYIAEPPLYRVKKGKKEIYIKDDKEFEHFLLNEIREKGRLVDAREKEFKGE 581
Query: 612 NYFFKLIDKYNKTIEIVHR-LKQIIDISILSAIMSDVILNLDTRENA--EQFAKKIIKKL 668
LID K E +R L + ++++ +++ + D R A ++ + ++L
Sbjct: 582 ELVRLLIDL--KDYEDAYRALVKSKGENLVNFLLTHRVREEDLRNPARVKEITHLMEEEL 639
Query: 669 NDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGK 728
D ++ ++++L Y + L K IID+NF+++ Y++++ I +
Sbjct: 640 GDYRVD--TKYNELEGAYDIIFYDDKLGTKT-IIDVNFLSSLSYREVLEGIHLHLPV--- 693
Query: 729 GVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMI 788
V + KK N+ +I + + A + + QRYKGLGEMNP QLWETTMNP
Sbjct: 694 QVFFEN------KKVEINSLGEIYDKFMDFARSGMEVQRYKGLGEMNPEQLWETTMNPKT 747
Query: 789 RCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 833
R L KVKI+DA AD+IF LMG+ VE RR+FIE A K++D+
Sbjct: 748 RRLKKVKIEDAAEADRIFTILMGEQVEPRREFIEAYAKEVKHLDV 792
>sp|Q9PKK3|GYRB_CHLMU DNA gyrase subunit B OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=gyrB PE=3 SV=1
Length = 804
Score = 593 bits (1528), Expect = e-168, Method: Compositional matrix adjust.
Identities = 290/593 (48%), Positives = 406/593 (68%), Gaps = 18/593 (3%)
Query: 13 DTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTK 72
D QE Y AS+I +LEGL+AVR+RP MYIGDT TGLHHLV+E++DN+IDE++AG+CT+
Sbjct: 2 DAQEKKYDASAITVLEGLQAVRERPGMYIGDTGV-TGLHHLVYEVVDNSIDEAMAGFCTE 60
Query: 73 INVTIYSDNSISISDNGRGIPIDIKIDDKHKPKR--SAAEIVMTELHAGGKFNKNSYKIS 130
+ V I D IS+SDNGRGIP+ I + K R SA E+V+T LHAGGKF+K+SYK+S
Sbjct: 61 VVVRILEDGGISVSDNGRGIPVQIHEKESAKQGREISALEVVLTVLHAGGKFDKDSYKVS 120
Query: 131 GGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDT 190
GGLHG+G+SCVN LS + ++ + + MEF G ++ ++++G T
Sbjct: 121 GGLHGVGVSCVNALSEKFIANVFKDGQAYSMEFS------------KGAPLTALQVLGST 168
Query: 191 NKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIK--KKEIFEFK 248
+K+GT+I F+ D +FS F IL KR+REL+FLN G+ I D+R K F ++
Sbjct: 169 DKRGTEILFYPDPTVFSTCVFDRAILMKRLRELAFLNRGITIIFEDDRDAGFDKVTFFYE 228
Query: 249 GGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNIL 308
GG FVSY+N++K + PT G+K + +I + ++QWN+ Y+E I + NNI
Sbjct: 229 GGIQSFVSYLNQNKESLFPTPIYIQGSKRGDD-GDIEFEAALQWNSGYSELIYSYANNIP 287
Query: 309 QVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNS 368
GGTHLTG + +TRA+N YI+ + K K+ + GEDIREGL ++S+K+P+P+F
Sbjct: 288 TRQGGTHLTGFSTALTRAVNSYIKSHNLAKSDKLSLTGEDIREGLVAIVSVKVPNPQFEG 347
Query: 369 QTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRK 428
QTK KL +S+V ++I + L F +ENP +K I +K+ AA++REAA++ RELT +
Sbjct: 348 QTKQKLGNSDVGSVAQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTIR 407
Query: 429 KNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIE 488
K+ +D L KL DC EK+PE CE+YIVEGDSAGGS KQGRDRRFQA+LP+RGK+LN+E
Sbjct: 408 KSALDSARLPGKLVDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVE 467
Query: 489 KARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFF 548
KAR +KI +++I ++I+ LG GI D FNL KLRY R+IIMTDAD+DG+HIR LLLTFF
Sbjct: 468 KARLQKIFQNQEIGSIIAALGCGIGTDNFNLSKLRYKRVIIMTDADVDGSHIRTLLLTFF 527
Query: 549 YRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLI 601
YR M LIE G +YIAQPPLY++ + Y+ + E + Y+L + + +++
Sbjct: 528 YRHMSALIENGCVYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTRESRVV 580
Score = 97.4 bits (241), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Query: 727 GKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNP 786
G G+ + K YT ++I+YL+ + QRYKGLGEMN QLW+TTMNP
Sbjct: 697 GTGITVSTE-DSKTPNYTCYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNP 755
Query: 787 MIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAK--NIDI 833
R L++V +KDA+ AD IF LMG+ V RR+FIE +AL + N+DI
Sbjct: 756 EQRTLVRVSLKDAVEADHIFTMLMGEEVPPRREFIESHALSIRMSNLDI 804
>sp|O84193|GYRB_CHLTR DNA gyrase subunit B OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=gyrB PE=3 SV=1
Length = 804
Score = 589 bits (1519), Expect = e-167, Method: Compositional matrix adjust.
Identities = 290/593 (48%), Positives = 407/593 (68%), Gaps = 18/593 (3%)
Query: 13 DTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTK 72
D QE Y AS+I +LEGL+AVR+RP MYIGDT TGLHHLV+E++DN+IDE++AG+CT+
Sbjct: 2 DAQEKKYDASAITVLEGLQAVRERPGMYIGDTGV-TGLHHLVYEVVDNSIDEAMAGFCTE 60
Query: 73 INVTIYSDNSISISDNGRGIPIDIKIDDKHKPKR--SAAEIVMTELHAGGKFNKNSYKIS 130
+ V I D ISISDNGRGIPI I + K R SA E+V+T LHAGGKF+K+SYK+S
Sbjct: 61 VVVRILEDGGISISDNGRGIPIQIHEKESAKQGREISALEVVLTVLHAGGKFDKDSYKVS 120
Query: 131 GGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDT 190
GGLHG+G+SCVN LS + ++ + + MEF G ++ ++++G T
Sbjct: 121 GGLHGVGVSCVNALSEKFIAKVFKDGQAYSMEFS------------RGAPLTTLQVLGPT 168
Query: 191 NKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIK--KKEIFEFK 248
+K+GT++ F+ D IFS F IL KR+REL+FLN GV I D+R K +F ++
Sbjct: 169 DKRGTEVLFYPDPAIFSTCVFDRAILMKRLRELAFLNRGVTIVFEDDRDTGFDKVVFFYE 228
Query: 249 GGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNIL 308
GG FVSY+N++K ++ P G++ + +I + ++QWN+ Y+E I + NNI
Sbjct: 229 GGIQSFVSYLNQNKEILFPNPIYMQGSRPGDD-GDIEFEAALQWNSGYSELIYSYANNIP 287
Query: 309 QVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNS 368
GGTHLTG + +TRA+N YI+ + K K+ + GEDI+EGL ++S+K+P+P+F
Sbjct: 288 TRQGGTHLTGFSTALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEG 347
Query: 369 QTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRK 428
QTK KL +S+V ++I + L F +ENP +K I +K+ AA++REAA++ RELT +
Sbjct: 348 QTKQKLGNSDVGSVSQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTLR 407
Query: 429 KNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIE 488
K+ +D L KL DC EK+PE CE+YIVEGDSAGGS KQGRDRRFQA+LP+RGK+LN+E
Sbjct: 408 KSALDSARLPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVE 467
Query: 489 KARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFF 548
KAR +K+ +++I ++I+ LG GI +D FNL KLRY RIIIMTDAD+DG+HIR LLLTFF
Sbjct: 468 KARLQKVFQNQEIGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFF 527
Query: 549 YRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLI 601
YR M LIE +YIAQPPLY++ + Y+ + E + Y+L + K +++
Sbjct: 528 YRHMSALIENECVYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIV 580
Score = 97.4 bits (241), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Query: 727 GKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNP 786
G G+ + KI Y ++I+YL+ + QRYKGLGEMN QLW+TTMNP
Sbjct: 697 GSGITVSTE-DPKISPYVCYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNP 755
Query: 787 MIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAK--NIDI 833
R L++V +KDA+ AD IF LMG+ V RR+FIE +AL + N+DI
Sbjct: 756 EQRTLVRVSLKDAVEADHIFTMLMGEEVPPRREFIESHALSIRMNNLDI 804
>sp|Q9ZLX3|GYRB_HELPJ DNA gyrase subunit B OS=Helicobacter pylori (strain J99) GN=gyrB
PE=3 SV=1
Length = 773
Score = 583 bits (1504), Expect = e-165, Method: Compositional matrix adjust.
Identities = 332/821 (40%), Positives = 504/821 (61%), Gaps = 55/821 (6%)
Query: 18 SYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTI 77
+Y + SI++L+GLE VRKRP MYIGDT+ G GLHH+V+E++DNA+DES+AG+C IN+T+
Sbjct: 3 NYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINITL 61
Query: 78 YSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIG 137
+ S + DNGRGIP+DI +K A +V+T LHAGGKF+ ++YK+SGGLHG+G
Sbjct: 62 TEEGSCIVEDNGRGIPVDIHPTEK----IPACTVVLTILHAGGKFDNDTYKVSGGLHGVG 117
Query: 138 LSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTN---KQG 194
+S VN LS+ L +TI + +I+ EF GI +S ++IIG T + G
Sbjct: 118 VSVVNALSKRLIMTIKKEGQIYRQEFE------------KGIPISELEIIGKTKSAKESG 165
Query: 195 TKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGF 254
T I F+ DE + +EF IL+KR +E+++LN+G+ I+ +E+ + +E + +K G F
Sbjct: 166 TTIEFFPDESVMEVVEFQAGILQKRFKEMAYLNDGLKISFKEEKTQLQETYFYKDGLKQF 225
Query: 255 VSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGT 314
V K +L+ F+++ +++ +I+V++ + + YNEN L F NNI +GGT
Sbjct: 226 VKDSAKKELLTPIIAFKSM-----DEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGT 280
Query: 315 HLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKL 374
H G + G+++AI +YI+ N K+S+ I EDI+EGL V+S+K+ +P F QTK+KL
Sbjct: 281 HEAGFKMGLSKAILQYIDNNIKTKESRP--ISEDIKEGLIAVVSLKMSEPLFEGQTKSKL 338
Query: 375 VSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDD 434
SS R V +++ + FL+ENP E+K+I K + AA++REA++K RELTRKK+ +
Sbjct: 339 GSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSV 398
Query: 435 IELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEK 494
L KLADCQ K+P E+++VEGDSAGGS KQGRDR FQA+LPL+GK+LN+EK+ K
Sbjct: 399 GTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSK 458
Query: 495 IILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPK 554
I+ SE+I +I+ G GI Q+ F++E+LRYH+IIIMTDAD+DG+HI+ LL+TFFYR +
Sbjct: 459 ILKSEEIKNMITAFGCGI-QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRP 517
Query: 555 LIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYF 614
LIE G+++IAQ PLYK K G E YL+D + + ++++ +V + I D++
Sbjct: 518 LIEQGHVFIAQAPLYKYKKGKTEIYLKDSVALDHFLIEHGINSVDIEGIGKNDLMN---L 574
Query: 615 FKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSNIE 674
K+ Y T+ + + ++++ + I + L+LD + K I++KL N +
Sbjct: 575 LKVARHYRYTLLELEKRYNLLEV-LRFLIETKDALSLDMK----VLEKSILEKLEGLNYQ 629
Query: 675 IIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGV--II 732
I+ F + +L K L ++ N +N FK ++ +
Sbjct: 630 ILRSFATEESLHLHAQTPKGL------VEFNLDDN-----------LFKDVLFEEAHYTY 672
Query: 733 QKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLL 792
QK + + + + + N A+ QRYKGLGEMNP LWETTM+ R L+
Sbjct: 673 QKLMEYNLDFLENKDILAFLEEVENYAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLI 732
Query: 793 KVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 833
K+KI+D D +F MGD VE RR FI+ +A K +D+
Sbjct: 733 KLKIEDLEKTDAVFSLCMGDEVEPRRAFIQAHAKDVKQLDV 773
>sp|P94604|GYRB_CLOAB DNA gyrase subunit B OS=Clostridium acetobutylicum (strain ATCC 824
/ DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=gyrB
PE=3 SV=2
Length = 637
Score = 583 bits (1502), Expect = e-165, Method: Compositional matrix adjust.
Identities = 290/580 (50%), Positives = 402/580 (69%), Gaps = 24/580 (4%)
Query: 19 YSASSIQILEGLEAVRKRPEMYIGDTSDGT-GLHHLVFEILDNAIDESLAGYCTKINVTI 77
Y S IQ+LEGLEAVRKRP MYIG T GT GLHHLV+EI+DN+IDE+LAGYC+ I V I
Sbjct: 8 YDESQIQVLEGLEAVRKRPGMYIGST--GTRGLHHLVYEIVDNSIDEALAGYCSHIKVFI 65
Query: 78 YSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIG 137
+ DNS+++SD+GRG+PI I HK K+ E++MT LHAGGKF +Y++SGGLHG+G
Sbjct: 66 HKDNSVTVSDDGRGMPIGIH----HKMKKPTVEVIMTILHAGGKFGGGAYRVSGGLHGVG 121
Query: 138 LSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKI 197
S VN LS ++ + I + G + SP + IGD+++ GTKI
Sbjct: 122 ASVVNALSETCEVEVKTEGHIWKQTYHRGKV------------ASPFEKIGDSDEHGTKI 169
Query: 198 HFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFVSY 257
+F D +IF + E+ Y+ L +R+REL+FLN G+ I L DER K EIF ++GG FVSY
Sbjct: 170 YFKPDPEIFEDTEYDYDTLSQRLRELAFLNKGIKIELTDERHDKNEIFHYEGGLKSFVSY 229
Query: 258 INKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLT 317
+N++K VV G+ S N ++++++Q+N+ YNENI F NNI ++GGTHL
Sbjct: 230 LNRNKEVVFKEPIYVEGSIDS----NYSVEIALQYNDGYNENIFSFANNIHTIEGGTHLA 285
Query: 318 GLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSS 377
G ++ +TR IN Y ++ +LK++ + GEDIREGLT V+S+K+ +P+F QTK KL ++
Sbjct: 286 GFKTALTRVINDYAKKFGYLKENDKNLSGEDIREGLTAVVSVKLTEPQFEGQTKTKLGNT 345
Query: 378 EVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDDIEL 437
EVR V+ II + + +L+ENP KL+ +K + A+R+REAA+K RE+TR+K++++ L
Sbjct: 346 EVRGIVDSIISERVSTYLEENPQIGKLVIDKALVASRAREAAKKAREITRRKSVLESTSL 405
Query: 438 STKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIIL 497
KLADC K+ E CE+YIVEGDSAGGS KQGR+RRFQA+LPLRGK++N+EK R +KI+
Sbjct: 406 PGKLADCSSKDAEECEIYIVEGDSAGGSAKQGRNRRFQAILPLRGKIMNVEKQRIDKILN 465
Query: 498 SEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIE 557
SE+I + + G GI +D F++ KLRYH+IIIMTDAD+DGAHIR L+LTFFYR M +LI
Sbjct: 466 SEEIKAMATAFGGGIGKD-FDVSKLRYHKIIIMTDADVDGAHIRTLILTFFYRYMTELIS 524
Query: 558 YGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKN 597
G+++IAQPPLYK+ E Y D E E + + K+
Sbjct: 525 EGHVFIAQPPLYKVTKTRKEYYAYSDKELEDVLQDVGGKD 564
Score = 100 bits (250), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 54/68 (79%)
Query: 766 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNA 825
QRYKGLGEMNP QLWETTMNP R L+KV I+DA++AD+IF LMGD V+ RRKFIE NA
Sbjct: 570 QRYKGLGEMNPEQLWETTMNPEQRTLIKVNIEDAMAADEIFTILMGDKVDPRRKFIEENA 629
Query: 826 LHAKNIDI 833
N+D+
Sbjct: 630 TKVVNLDV 637
>sp|P55992|GYRB_HELPY DNA gyrase subunit B OS=Helicobacter pylori (strain ATCC 700392 /
26695) GN=gyrB PE=3 SV=1
Length = 773
Score = 582 bits (1501), Expect = e-165, Method: Compositional matrix adjust.
Identities = 336/829 (40%), Positives = 505/829 (60%), Gaps = 71/829 (8%)
Query: 18 SYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTI 77
+Y + SI++L+GLE VRKRP MYIGDT+ G GLHH+V+E++DNA+DES+AG+C IN+T+
Sbjct: 3 NYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINITL 61
Query: 78 YSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIG 137
+ S + DNGRGIP+DI +K A +V+T LHAGGKF+ ++YK+SGGLHG+G
Sbjct: 62 TDEGSCIVEDNGRGIPVDIHPTEK----IPACTVVLTILHAGGKFDNDTYKVSGGLHGVG 117
Query: 138 LSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTN---KQG 194
+S VN LS+ L +TI + +I+ EF GI S ++IIG T + G
Sbjct: 118 VSVVNALSKRLIMTIKKEGQIYRQEFE------------KGIPTSELEIIGKTKSAKESG 165
Query: 195 TKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGF 254
T I F+ DE + +EF IL+KR +E+++LN+G+ I+ +E+ + +E + ++ G F
Sbjct: 166 TTIEFFPDESVMEVVEFQAGILQKRFKEMAYLNDGLKISFKEEKTQLQETYFYEDGLKQF 225
Query: 255 VSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGT 314
V K +L+ F+++ +++ +I+V++ + + YNEN L F NNI +GGT
Sbjct: 226 VKDSAKKELLTPIISFKSM-----DEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGT 280
Query: 315 HLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKL 374
H G + G+++AI +YI N K+S+ I EDI+EGL V+S+K+ +P F QTK+KL
Sbjct: 281 HEAGFKMGLSKAILQYIGNNIKTKESRP--ISEDIKEGLIAVVSLKMSEPLFEGQTKSKL 338
Query: 375 VSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDD 434
SS R V +++ + FL+ENP E+K+I K + AA++REA++K RELTRKK+ +
Sbjct: 339 GSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSV 398
Query: 435 IELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEK 494
L KLADCQ K+P E+++VEGDSAGGS KQGRDR FQA+LPL+GK+LN+EK+ K
Sbjct: 399 GTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSK 458
Query: 495 IILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPK 554
I+ SE+I +I+ G GI Q+ F++E+LRYH+IIIMTDAD+DG+HI+ LL+TFFYR +
Sbjct: 459 ILKSEEIKNMITAFGCGI-QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRP 517
Query: 555 LIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDI-----I 609
LIE G++YIAQ PLYK K G E YL+D + + ++++ +V + I D+ +
Sbjct: 518 LIEQGHVYIAQAPLYKYKKGKTEIYLKDSVALDHFLIEHGINSVDIEGIGKNDLMNLLKV 577
Query: 610 KENYFFKLID---KYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIK 666
+Y + L++ +YN +EI+ L + D L+LD + K I++
Sbjct: 578 ARHYRYALLELEKRYN-LLEILRFLIETKDA-----------LSLDMK----VLEKSILE 621
Query: 667 KLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKII 726
KL N +I+ F + +L K L ++ N +N FK+++
Sbjct: 622 KLEGLNYQILRSFATEESLHLHTQTPKGL------VEFNLDDN-----------LFKEVL 664
Query: 727 GKGV--IIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTM 784
+ QK + + + + + N A+ QRYKGLGEMNP LWETTM
Sbjct: 665 FEEANYTYQKLMEYNLDFLENKDILAFLEEVENHAKKGANIQRYKGLGEMNPNDLWETTM 724
Query: 785 NPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 833
+ R L+K+KI+D D +F MGD VE RR FI+ +A K +D+
Sbjct: 725 HKENRSLIKLKIEDLEKTDAVFSLCMGDEVEPRRAFIQAHAKDVKQLDV 773
>sp|P05652|GYRB_BACSU DNA gyrase subunit B OS=Bacillus subtilis (strain 168) GN=gyrB PE=3
SV=1
Length = 638
Score = 570 bits (1470), Expect = e-161, Method: Compositional matrix adjust.
Identities = 295/581 (50%), Positives = 403/581 (69%), Gaps = 26/581 (4%)
Query: 13 DTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTK 72
+ Q++SY + IQ+LEGLEAVRKRP MYIG T + GLHHLV+EI+DN+IDE+LAGYCT
Sbjct: 2 EQQQNSYDENQIQVLEGLEAVRKRPGMYIGST-NSKGLHHLVWEIVDNSIDEALAGYCTD 60
Query: 73 INVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGG 132
IN+ I DNSI++ DNGRGIP+ I K R A E++MT LHAGGKF+ + YK+SGG
Sbjct: 61 INIQIEKDNSITVVDNGRGIPVGIH----EKMGRPAVEVIMTVLHAGGKFDGSGYKVSGG 116
Query: 133 LHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNK 192
LHG+G S VN LS L +T++R+ KIH ++ GV V+ ++IIG+T+
Sbjct: 117 LHGVGASVVNALSTELDVTVHRDGKIHRQTYKRGV------------PVTDLEIIGETDH 164
Query: 193 QGTKIHFWVDEKIFS-NIEFHYEILKKRIRELSFLNNGVCITLIDER--IKKKEIFEFKG 249
GT HF D +IFS E+ Y++L R+REL+FL GV IT+ D+R ++K + ++G
Sbjct: 165 TGTTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEG 224
Query: 250 GTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQ 309
G +V Y+N+SK VVH I +K+ I ++V++Q+N+SY NI FTNNI
Sbjct: 225 GIKSYVEYLNRSKEVVHEEPIY-----IEGEKDGITVEVALQYNDSYTSNIYSFTNNINT 279
Query: 310 VDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQ 369
+GGTH G ++G+TR IN Y + +K++ + G+D+REGLT ++SIK PDP+F Q
Sbjct: 280 YEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQ 339
Query: 370 TKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKK 429
TK KL +SE R + + + F+ ENP +K I +K + AAR+R AA+K RELTR+K
Sbjct: 340 TKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRK 399
Query: 430 NLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEK 489
+ ++ L KLADC K+P + ELYIVEGDSAGGS KQGRDR FQA+LPLRGK+LN+EK
Sbjct: 400 SALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEK 459
Query: 490 ARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFY 549
AR +KI+ + ++ ++I+ LG GI +D FNLEK RYH+++IMTDAD+DGAHIR LLLTFFY
Sbjct: 460 ARLDKILSNNEVRSMITALGTGIGED-FNLEKARYHKVVIMTDADVDGAHIRTLLLTFFY 518
Query: 550 RKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYM 590
R M ++IE GY+YIAQPPLYK++ G Y +D E E +
Sbjct: 519 RYMRQIIENGYVYIAQPPLYKVQQGKRVEYAYNDKELEELL 559
Score = 97.1 bits (240), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 52/68 (76%)
Query: 766 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNA 825
QRYKGLGEMN QLWETTM+P R LL+V ++DA+ AD+ F LMGD VE RR FIE NA
Sbjct: 571 QRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMDADETFEMLMGDKVEPRRNFIEANA 630
Query: 826 LHAKNIDI 833
+ KN+DI
Sbjct: 631 RYVKNLDI 638
>sp|O50627|GYRB_BACHD DNA gyrase subunit B OS=Bacillus halodurans (strain ATCC BAA-125 /
DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=gyrB PE=3
SV=1
Length = 637
Score = 549 bits (1415), Expect = e-155, Method: Compositional matrix adjust.
Identities = 279/573 (48%), Positives = 394/573 (68%), Gaps = 25/573 (4%)
Query: 15 QESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKIN 74
++ +Y S IQ+LEGLEAVRKRP MYIG TS GLHHLV+EI+DN+IDE++AG+C +I
Sbjct: 4 EQQAYDESQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVWEIVDNSIDEAMAGFCDEIG 62
Query: 75 VTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLH 134
V I DNSI+++DNGRGIP+ I K R A E++MT LHAGGKF YK+SGGLH
Sbjct: 63 VVIEEDNSITVTDNGRGIPVGIH----EKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 118
Query: 135 GIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQG 194
G+G S VN LS L++ ++R K+HY +F G+ + +++IG T++ G
Sbjct: 119 GVGASVVNALSTMLEVEVHREGKVHYQKFH------------RGVPAADLEVIGTTDRTG 166
Query: 195 TKIHFWVDEKIFSNIE-FHYEILKKRIRELSFLNNGVCITLIDERIKKK-EIFEFKGGTS 252
TKIHF D IF+ F Y+ L R+REL+FLN G+ I + D R ++K + F ++GG +
Sbjct: 167 TKIHFKPDGDIFTETTVFEYDTLASRLRELAFLNKGLRIKITDMREEEKSDEFHYEGGIA 226
Query: 253 GFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDG 312
FV ++N+++ +H T I +K + +++++Q+N+ + NI F NNI +G
Sbjct: 227 SFVEHLNRTRETLHETPIH-----IEGEKQGVYVEIAVQYNDGFTSNIYSFANNINTHEG 281
Query: 313 GTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKN 372
GTH +G ++G+TR IN Y ++ K+S + GED+REGLT ++S+KIPDP+F QTK
Sbjct: 282 GTHESGFKTGLTRVINDYARKHNLFKESDPNLTGEDVREGLTAIISVKIPDPQFEGQTKT 341
Query: 373 KLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLI 432
KL +SE R + + + FL E+P ++ + +K + A+R+REAA+K RELTR+K+ +
Sbjct: 342 KLGNSEARTITDSLFTEHFSRFLIEHPQVARKLVDKGLMASRAREAAKKARELTRRKSAL 401
Query: 433 DDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARF 492
+ L KLADC ++ + E+YIVEGDSAGGS KQGRDR FQA+LPLRGK+LN+EKAR
Sbjct: 402 EVSSLPGKLADCSSRDASISEIYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARL 461
Query: 493 EKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKM 552
+KI+ + +I +I+ LG GI D+F++EK RYH+IIIMTDAD+DGAHIR L+LTFFYR M
Sbjct: 462 DKILANNEIRAIITALGTGI-GDDFDIEKARYHKIIIMTDADVDGAHIRTLILTFFYRYM 520
Query: 553 PKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIE 585
LIE+GY+YIAQPPLYK++ G + Y D E
Sbjct: 521 RPLIEHGYVYIAQPPLYKVQQGKDIQYAYGDAE 553
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 65/91 (71%), Gaps = 2/91 (2%)
Query: 743 YTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISA 802
Y +I++ L ++A+ + QRYKGLGEMNP QLWETTM+P R +L+V ++DA+ A
Sbjct: 549 YGDAELQEILSQLPDKAKPGI--QRYKGLGEMNPSQLWETTMDPGQRTVLQVTLEDAMKA 606
Query: 803 DKIFMTLMGDNVELRRKFIELNALHAKNIDI 833
D+IF LMGD VE RR FI+ NA + KN+DI
Sbjct: 607 DEIFEILMGDRVEPRRDFIQENARYVKNLDI 637
>sp|O29720|GYRB_ARCFU DNA gyrase subunit B OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=gyrB PE=3
SV=2
Length = 632
Score = 545 bits (1404), Expect = e-154, Method: Compositional matrix adjust.
Identities = 277/593 (46%), Positives = 402/593 (67%), Gaps = 37/593 (6%)
Query: 13 DTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTK 72
D Y+A I++L+ LEAVRKRP MYIG GLHHL++E++DNA+DE+LAGYC
Sbjct: 4 DQTAVEYTAKDIEVLDDLEAVRKRPGMYIGGVGV-RGLHHLLWEVVDNAVDEALAGYCDT 62
Query: 73 INVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGG 132
I V+++ D S S+ DNGRGIP ++ H+ +SA EIVMT+LHAGGKF+K Y++SGG
Sbjct: 63 IKVSLHKDGSASVEDNGRGIPTEM-----HELGKSALEIVMTKLHAGGKFSKKVYRVSGG 117
Query: 133 LHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSP-----IKII 187
LHG+G+S VN LS +L++ + RN KI+Y +++ G S SP +++
Sbjct: 118 LHGVGVSVVNALSEWLEVWVKRNGKIYYQKYQRG-------------SRSPEAGHRTEVL 164
Query: 188 GDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEF 247
G+T + GT + F D +IF EF YEI+ +R++EL++LN G+ I L DER K+E F F
Sbjct: 165 GETKEHGTTVRFKPDREIFETTEFKYEIVAQRLKELAYLNRGLKIILFDEREGKEETFHF 224
Query: 248 KGGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNI 307
+ G G V +N+++ +H I+ I K+ ++++V++Q+ +S ENI F NNI
Sbjct: 225 EDGIIGLVRSLNRNRKPLHEPIY------IETTKDGVSVEVAIQFTDSDVENIQAFANNI 278
Query: 308 LQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFN 367
+GG+H+ G R+G+TRA+N+Y +++ LKK + + G DIREGLT V+S+K+P+P+F
Sbjct: 279 NTSEGGSHVVGFRAGLTRAVNEYGKKH--LKKFE-PVTGVDIREGLTAVISVKVPEPQFE 335
Query: 368 SQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTR 427
QTK KL +S+V+ VE + + +L+ENP +++ + K I ++REAA++ +EL +
Sbjct: 336 GQTKTKLTNSDVKTVVESAVYSGVLRWLEENPAQAETLLNKFILNKKAREAAKRAKELVK 395
Query: 428 KKN-LIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLN 486
+KN LI L KLADC KNPE EL+IVEG+SAGGS KQ RDRRFQA+LP++GK++N
Sbjct: 396 RKNELI--TTLPGKLADCSSKNPEERELFIVEGESAGGSAKQARDRRFQAILPIKGKIIN 453
Query: 487 IEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLT 546
+EKA +++ +++I +IS +G GI +D F++ K RY RIIIMTDAD+DGAHIR LLLT
Sbjct: 454 VEKAGMARVLKNDEIKAIISAIGAGIGKD-FDITKARYRRIIIMTDADVDGAHIRTLLLT 512
Query: 547 FFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVK 599
FFYR M LIE GY+YIAQPPLY+IK G Y D E +R + ++ V+
Sbjct: 513 FFYRYMRPLIESGYLYIAQPPLYQIKKGKKSYYAYSDEELKRTLEQVGGGEVQ 565
Score = 89.7 bits (221), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 52/68 (76%)
Query: 766 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNA 825
QRYKGLGEMNP QLWETTMNP R L++V ++DA AD++F LMG++VE RR FI ++
Sbjct: 565 QRYKGLGEMNPQQLWETTMNPENRILIQVTLEDAKRADELFSILMGEDVESRRNFIMAHS 624
Query: 826 LHAKNIDI 833
KN+DI
Sbjct: 625 KEVKNLDI 632
>sp|P77993|GYRB_THEMA DNA gyrase subunit B OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=gyrB PE=3 SV=2
Length = 636
Score = 540 bits (1392), Expect = e-152, Method: Compositional matrix adjust.
Identities = 276/584 (47%), Positives = 392/584 (67%), Gaps = 21/584 (3%)
Query: 19 YSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIY 78
YSA SI++L+GLE VR RP MYIG T GLHHLV+E++DN++DE+LAGYC I VT++
Sbjct: 4 YSAESIKVLKGLEPVRMRPGMYIGSTGK-RGLHHLVYEVVDNSVDEALAGYCDWIRVTLH 62
Query: 79 SDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGL 138
D S+ + DNGRGIP+DI ++ RSA E+V T LHAGGKF+K+SYKISGGLHG+G+
Sbjct: 63 EDGSVEVEDNGRGIPVDIHPEEG----RSALEVVFTVLHAGGKFSKDSYKISGGLHGVGV 118
Query: 139 SCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIH 198
S VN LS +L++ ++R+ KI+ + G V+P+++IG+T+K GT +
Sbjct: 119 SVVNALSEWLEVRVHRDGKIYRQRYE------------RGKPVTPVEVIGETDKHGTIVR 166
Query: 199 FWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFVSYI 258
F D IFS EF +IL+ R+RE++FL G+ I D +K+ F+F GG +V Y+
Sbjct: 167 FKPDPLIFSETEFDPDILEHRLREIAFLVPGLKIEFEDRINGEKKTFKFDGGIVEYVKYL 226
Query: 259 NKSKLVVHPTIFQAIGNKISEK--KNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHL 316
N+ K +H I K+ K ++ + ++++ Q+ +SY+E+I+ F N I VDGGTH+
Sbjct: 227 NRGKKALHDVIHIKRTEKVKTKNGEDEVIVEIAFQYTDSYSEDIVSFANTIKTVDGGTHV 286
Query: 317 TGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVS 376
T +S +TR +N+Y +++ FLKK GED+REGLT V+S+ + +P+F QTK+KL +
Sbjct: 287 TAFKSTLTRLMNEYGKKHNFLKKDD-SFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGN 345
Query: 377 SEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDDIE 436
EV++ V + + + L NP K I KI+ ++REAA++ RE+ R+KN++ +
Sbjct: 346 EEVKEAVTKAMREELKKIFDANPELVKTILSKIMSTKQAREAAKRAREMVRRKNVLQNTT 405
Query: 437 LSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKII 496
L KLADC + E EL+IVEGDSAGGS KQ RDR FQAVLP+RGK+LN+EK+ ++++
Sbjct: 406 LPGKLADCSSTHREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLL 465
Query: 497 LSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLI 556
+EQI+ +I +G GI D+F+ KLRY RIIIMTDADIDGAHIR LLLT FYR M LI
Sbjct: 466 KNEQISDIIVAVGTGI-GDDFDESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLI 524
Query: 557 EYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKL 600
E G +YIA PPLY+IK G E Y+ D E Y K+ K +++
Sbjct: 525 EQGRVYIALPPLYRIKAGREEFYVYSDQELAEYKEKLQGKRIEI 568
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 52/68 (76%)
Query: 766 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNA 825
QRYKGLGEMNP QLWETTMNP R +++V I+DA AD++F LMG++ RR+FIE +A
Sbjct: 569 QRYKGLGEMNPEQLWETTMNPETRKIIRVTIEDAEEADRLFEILMGNDPSSRREFIERHA 628
Query: 826 LHAKNIDI 833
L K +DI
Sbjct: 629 LKVKELDI 636
>sp|O87545|GYRB_TREDE DNA gyrase subunit B OS=Treponema denticola (strain ATCC 35405 /
CIP 103919 / DSM 14222) GN=gyrB PE=3 SV=1
Length = 638
Score = 535 bits (1377), Expect = e-151, Method: Compositional matrix adjust.
Identities = 278/587 (47%), Positives = 407/587 (69%), Gaps = 29/587 (4%)
Query: 17 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVT 76
S+YSA++I +L+GLEAVRKRP MYIG T GLHHLV+E++DN IDE++AG+C KI V
Sbjct: 4 SNYSANNITVLKGLEAVRKRPGMYIGSTGP-DGLHHLVYEVVDNCIDEAMAGFCDKILVV 62
Query: 77 IYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGI 136
+ ++ + + DNGRGIP+DI +K SA E+V+T LHAGGKF+K SYK+SGGLHG+
Sbjct: 63 LEPNDIVRVEDNGRGIPVDIHPTEKI----SALELVLTRLHAGGKFDKGSYKVSGGLHGV 118
Query: 137 GLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTK 196
G+S VN LS +++ + ++ HY +F G + + P+K IG+T K GT
Sbjct: 119 GVSVVNALSVWMEAKVYKDGFEHYAKFEKGSI------------LEPVKKIGETEKSGTV 166
Query: 197 IHFWVDEKIFSNIE-FHYEILKKRIRELSFLNNGVCITLIDERI--KKKEIFEFKGGTSG 253
I + VD IF+ +++E+L R+REL+FLN+ + IT+ DER+ K+ F F+GG S
Sbjct: 167 IRWAVDPSIFTETTVYNFEVLATRLRELAFLNSKISITMRDERLSTPKEVTFAFEGGISQ 226
Query: 254 FVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGG 313
FVSY+N+SK +F I +KN+I +V++Q+N+ YNEN+L F N+I +GG
Sbjct: 227 FVSYLNESK-----QVFPKSPVFIEGEKNDILCEVAIQYNDGYNENLLSFVNDINTREGG 281
Query: 314 THLTGLRSGITRAINKYIEE-NEFLKKSKIE--IIGEDIREGLTCVLSIKIPDPKFNSQT 370
THL G ++ +TR +N ++++ + +KK E + GED+R GLT ++S+K+P+P+F QT
Sbjct: 282 THLEGFKTALTRVMNDFLKKYPKLVKKMDKEEKLTGEDVRAGLTAIVSVKVPEPQFEGQT 341
Query: 371 KNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKN 430
K KL +S+VR V+ + + L F ++NP E + + EK + A +R AAR+ +E TR+K+
Sbjct: 342 KTKLGNSDVRGIVDSFVNEKLTLFFEQNPNEVEKVLEKCVAEAAARIAARRAKEATRRKS 401
Query: 431 LIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKA 490
+D L KLADC K+PE CE+YIVEGDSAGGS K+GRD + QA+LPL GK+LN+EK
Sbjct: 402 GLDSFGLPGKLADCSLKDPESCEVYIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEKT 461
Query: 491 RFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYR 550
R +K++ +E++ +I+TLG GI +D FN+EKLRYH++IIM DAD+DG+HIR LLLTFF+R
Sbjct: 462 RLDKVVNNEKLQPIIATLGTGIGKD-FNIEKLRYHKVIIMADADVDGSHIRTLLLTFFFR 520
Query: 551 KMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKN 597
MP++IE G++Y+A PPLYKI + E Y+ +D E + + +I N
Sbjct: 521 YMPQVIEKGHVYLAMPPLYKISHNKKEWYVYNDDERDSVLDQIGRGN 567
Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 55/68 (80%), Gaps = 1/68 (1%)
Query: 766 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNA 825
QRYKGLGEM+ QLWETTM+P R +++V + DA+ AD+IF TLMG+ VE RRKFIE NA
Sbjct: 572 QRYKGLGEMDGTQLWETTMDPARRKMMRVTLPDAVEADRIFSTLMGEEVEPRRKFIEENA 631
Query: 826 LHAKNIDI 833
++A N+D+
Sbjct: 632 VYA-NLDV 638
>sp|D4GZ01|GYRB_HALVD DNA gyrase subunit B OS=Haloferax volcanii (strain ATCC 29605 / DSM
3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 /
DS2) GN=gyrB PE=1 SV=1
Length = 639
Score = 533 bits (1373), Expect = e-150, Method: Compositional matrix adjust.
Identities = 272/576 (47%), Positives = 380/576 (65%), Gaps = 20/576 (3%)
Query: 14 TQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKI 73
+Q++ Y A IQ+LEGLEAVRKRP MYIG T D GLHHLV+E++DN+IDE+LAG+C I
Sbjct: 2 SQDNEYGAGQIQVLEGLEAVRKRPAMYIGST-DSRGLHHLVYEVVDNSIDEALAGHCDAI 60
Query: 74 NVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGL 133
V ++ D S+S++DNGRGIP+D + R A E++MT LHAGGKF+ SY++SGGL
Sbjct: 61 EVALHEDGSVSVTDNGRGIPVDTH----EQYDRPALEVIMTVLHAGGKFDNKSYQVSGGL 116
Query: 134 HGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQ 193
HG+G+S VN LS L++ + R+ + F G Q + + +
Sbjct: 117 HGVGVSVVNALSSELEVEVKRDGAVWTHRFEVGEPQVEEFERVRDLEPG--------EDT 168
Query: 194 GTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSG 253
GT I FW D+ IF EF ++ L+ R+REL+FLN+GV I+L DER + F F+GG
Sbjct: 169 GTTIRFWPDDGIFETTEFDFKTLENRLRELAFLNSGVEISLSDERTDESSTFLFEGGIRE 228
Query: 254 FVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGG 313
FV Y+N++K +H + ++ I ++++MQ + +I F NNI +GG
Sbjct: 229 FVEYLNETKTALHDDVIY-----YDDESEGIEVEIAMQATDELQGSIHAFANNINTREGG 283
Query: 314 THLTGLRSGITRAINKYIEENEFLKK-SKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKN 372
THLTG ++ +TR +N Y ++ L + GED+REGLT V+SIK PDP+F QTK
Sbjct: 284 THLTGFKTALTRVVNDYANTHDMLDDLDGDNLRGEDVREGLTAVISIKHPDPQFEGQTKT 343
Query: 373 KLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLI 432
KL +SEVR VE + + L F +ENP + I K +EAAR+R+AA++ ELTR+K+ +
Sbjct: 344 KLGNSEVRGIVESVTHQQLGTFFEENPDTATAIISKAVEAARARKAAKQAEELTRRKSAL 403
Query: 433 DDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARF 492
+ L KLADCQ ++P EL+IVEGDSAGGS KQGRDR+FQA+LPL+GK+LN+EK R
Sbjct: 404 ESTSLPGKLADCQSRDPAESELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKHRL 463
Query: 493 EKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKM 552
++I+ +++I LI+ +G G+ DEF++EK RY R+I+MTDAD+DGAHIR LLLT YR M
Sbjct: 464 DRILENDEIRALITAIGGGV-GDEFDIEKARYQRLILMTDADVDGAHIRTLLLTLLYRHM 522
Query: 553 PKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEER 588
LIE GY+Y AQPPLY+++Y N D+ E +R
Sbjct: 523 RPLIEAGYVYAAQPPLYRVRYRGNTYDAMDEAERDR 558
Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 52/68 (76%)
Query: 766 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNA 825
QR+KGLGEMNP QLW+TTMNP R L ++ ++DA +AD++F LMGD V R++FI+ +A
Sbjct: 572 QRFKGLGEMNPDQLWDTTMNPENRVLKRITVEDAAAADRMFNILMGDAVGPRKQFIKDHA 631
Query: 826 LHAKNIDI 833
A+ +DI
Sbjct: 632 NDAEWVDI 639
>sp|P33769|GYRB_BORBU DNA gyrase subunit B OS=Borrelia burgdorferi (strain ATCC 35210 /
B31 / CIP 102532 / DSM 4680) GN=gyrB PE=3 SV=4
Length = 634
Score = 531 bits (1369), Expect = e-150, Method: Compositional matrix adjust.
Identities = 287/590 (48%), Positives = 412/590 (69%), Gaps = 27/590 (4%)
Query: 18 SYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTI 77
+Y AS+IQ+L+GLEAVRKRP MYIG S GLHHLV+E++DN+IDE+LAG+C +I+V I
Sbjct: 2 NYVASNIQVLKGLEAVRKRPGMYIGSVSI-NGLHHLVYEVVDNSIDEALAGFCDRIDVII 60
Query: 78 YSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIG 137
DN+I++ DNGRGIP DI + SA E+V+T+LH+GGKFNK +YK+SGGLHG+G
Sbjct: 61 NLDNTITVIDNGRGIPTDIH----EEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVG 116
Query: 138 LSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKI 197
+S VN LS FL++ +NR+ KI F GI S ++++G+++ GTK+
Sbjct: 117 ISVVNALSSFLEVYVNRDGKIFRQTFS------------KGIPTSKVEVVGESSVTGTKV 164
Query: 198 HFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEI--FEFKGGTSGFV 255
F D +IF +++++++L+KR++EL+FLN+ + I++ D+RI K++ F F+GG FV
Sbjct: 165 TFLADSEIFETLDYNFDVLEKRLKELAFLNDKIYISIEDKRIGKEKSSKFYFEGGIKSFV 224
Query: 256 SYI-NKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGT 314
Y+ N SK FQ+ I N++ ++V ++W SY++NIL F NNI +GGT
Sbjct: 225 DYLTNDSKA------FQSEPYYIDGFINDVIVNVGLKWTESYSDNILSFVNNINTREGGT 278
Query: 315 HLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKL 374
H+ G RSG+T+A+N+ + ++ KK + G+D +EGLT V+S+K+P+P+F QTK+KL
Sbjct: 279 HVMGFRSGLTKAMNEAFKNSKISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKL 338
Query: 375 VSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDD 434
+SE+RK VE ++ + L + + NP E I K I+AAR+REAARK RE RKKN +
Sbjct: 339 GNSEIRKIVEVVVYEHLLEIINLNPLEIDTILGKAIKAARAREAARKARESERKKNAFES 398
Query: 435 IELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEK 494
+ L KLADC KNP E+YIVEGDSAGGS K GR+R FQA+LPL GK+LN+EK R +K
Sbjct: 399 LALPGKLADCTSKNPLEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDK 458
Query: 495 IILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPK 554
+I ++++ +I++LG G+ + F++ KLRYH+IIIM DAD+DG+HIR LLL FF+R M
Sbjct: 459 VITNDKLIPIIASLGAGVGK-TFDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRD 517
Query: 555 LIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIE 604
LIE GYIYIA PPLYKIKY N Y ++ E+E+++ I KN IS++
Sbjct: 518 LIENGYIYIAMPPLYKIKYDNRIYYFYEEKEKEKFLDSIETKNRNSISLQ 567
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 61/84 (72%)
Query: 750 KIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTL 809
K ++ + + N + QRYKGLGEMNP QLWETTM+P R + + I DAI A+KIF+TL
Sbjct: 551 KFLDSIETKNRNSISLQRYKGLGEMNPTQLWETTMDPARRKMRLMNIDDAIEAEKIFVTL 610
Query: 810 MGDNVELRRKFIELNALHAKNIDI 833
MGD VE R++FIE NAL+ N+D+
Sbjct: 611 MGDLVEPRKEFIEQNALNVINLDV 634
>sp|Q9X3Y6|GYRB_BACAN DNA gyrase subunit B OS=Bacillus anthracis GN=gyrB PE=3 SV=2
Length = 640
Score = 530 bits (1365), Expect = e-149, Method: Compositional matrix adjust.
Identities = 290/582 (49%), Positives = 399/582 (68%), Gaps = 25/582 (4%)
Query: 15 QESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKIN 74
QE+SY S IQ+LEGLEAVRKRP MYIG TS G GLHHLV+EI+DN+IDE+LAGYC +IN
Sbjct: 7 QENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEIN 65
Query: 75 VTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLH 134
V+I DNSI ++DNGRGIP+ I+ K R A E++MT LHAGGKF YK+SGGLH
Sbjct: 66 VSIEEDNSIRVTDNGRGIPVGIQ----EKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121
Query: 135 GIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQG 194
G+G S VN LS L++ ++R KIHY ++ GI V+ +K+IGDT++ G
Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYE------------RGIPVADLKVIGDTDQTG 169
Query: 195 TKIHFWVDEKIFSNIE-FHYEILKKRIRELSFLNNGVCITLIDER-IKKKEIFEFKGGTS 252
T F D +IF + ++ L R+REL+FLN + +T+ D+R K+K+ F ++GG
Sbjct: 170 TITRFKPDPEIFQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIK 229
Query: 253 GFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDG 312
+V ++N+SK +H G+K + I ++VS+Q+N Y NI FTNNI +G
Sbjct: 230 SYVEHLNRSKQPIHEEPVYVEGSK-----DGIQVEVSLQYNEGYTNNIYSFTNNIHTYEG 284
Query: 313 GTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKN 372
GTH G ++ +TR IN Y +N LK + + GED+REGLT ++SIK P+P+F QTK
Sbjct: 285 GTHEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKT 344
Query: 373 KLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLI 432
KL +SE R E + + FL ENP ++ I EK AAR+R AA+K RELTR+K+ +
Sbjct: 345 KLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSAL 404
Query: 433 DDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARF 492
+ L KLADC K+P + E+YIVEGDSAGGS KQGRDR FQA+LPL+GK++N+EKAR
Sbjct: 405 EVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARL 464
Query: 493 EKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKM 552
+KI+ ++++ T+I+ +G I D F++EK RYH++IIMTDAD+DGAHIR LLLTFFYR M
Sbjct: 465 DKILSNDEVRTIITAIGTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYM 523
Query: 553 PKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIA 594
++IE+GYIYIAQPPL+K++ G Y ++ E E+ + ++
Sbjct: 524 RQIIEHGYIYIAQPPLFKVQQGKKIQYAYNEKELEKILAELP 565
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 76/123 (61%), Gaps = 3/123 (2%)
Query: 712 YKKLVSIISTFKKIIGKGVIIQKSIGEKIK-KYTANNFYKIINYLRNEAENMVIKQRYKG 770
Y+ + II I + + + G+KI+ Y KI+ L + + + QRYKG
Sbjct: 520 YRYMRQIIEHGYIYIAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPGI--QRYKG 577
Query: 771 LGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKN 830
LGEMNP QLWETTM+P +R LL+V ++DAI AD+ F LMGD VE RR FI+ NA + KN
Sbjct: 578 LGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKN 637
Query: 831 IDI 833
+DI
Sbjct: 638 LDI 640
>sp|P21558|GYRB_HALL2 DNA gyrase subunit B OS=Haloferax lucentense (strain DSM 14919 /
JCM 9276 / NCIMB 13854 / Aa 2.2) GN=gyrB PE=3 SV=1
Length = 639
Score = 526 bits (1356), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/576 (46%), Positives = 378/576 (65%), Gaps = 20/576 (3%)
Query: 14 TQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKI 73
+Q++ Y A IQ+LEGLEAVRKRP MYIG T D GLHHLV+E++DN+IDE+LAG+C I
Sbjct: 2 SQDNEYGAGQIQVLEGLEAVRKRPAMYIGST-DSRGLHHLVYEVVDNSIDEALAGHCDAI 60
Query: 74 NVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGL 133
V ++ D S+S++DNGRGIP+ + R A E++MT LHAGGKF+ SY++SGGL
Sbjct: 61 EVALHEDGSVSVTDNGRGIPVGTH----EQYDRPALEVIMTVLHAGGKFDNKSYQVSGGL 116
Query: 134 HGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQ 193
HG+G++ VN LS L++ + + + F G Q + + +
Sbjct: 117 HGVGVTVVNALSSELEVEVKHDGAVWTHRFEVGEPQVEEFERVRDLEPG--------EDT 168
Query: 194 GTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSG 253
GT I FW D+ IF EF ++ L+ R+REL+FLN+GV I+L DER + F F+GG
Sbjct: 169 GTTIRFWPDDGIFETTEFDFKTLENRLRELAFLNSGVEISLSDERTDESSTFLFEGGIRE 228
Query: 254 FVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGG 313
FV Y+N++K +H + ++ I ++++MQ + +I F NNI +GG
Sbjct: 229 FVEYLNETKTALHDDVIY-----YDDESEGIEVEIAMQATDELQGSIHAFANNINTREGG 283
Query: 314 THLTGLRSGITRAINKYIEENEFLKK-SKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKN 372
THLTG ++ +TR +N Y ++ L + GED+REGLT V+S+K PDP+F QTK
Sbjct: 284 THLTGFKTALTRVVNDYANSHDMLDDLDGDNLRGEDVREGLTAVISVKHPDPQFEGQTKT 343
Query: 373 KLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLI 432
KL +SEVR VE + + L F +ENP + I K +EAAR+R+AA++ ELTR+K+ +
Sbjct: 344 KLGNSEVRGIVESVTHQQLGTFFEENPDTATAIISKAVEAARARKAAKQAEELTRRKSAL 403
Query: 433 DDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARF 492
+ L KLADCQ ++P EL+IVEGDSAGGS KQGRDR+FQA+LPL+GK+LN+EK R
Sbjct: 404 ESTSLPGKLADCQSRDPSESELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKHRL 463
Query: 493 EKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKM 552
++I+ +++I LI+ +G G+ DEF++EK RY R+I+MTDAD+DGAHIR LLLT YR M
Sbjct: 464 DRILENDEIRALITAIGGGV-GDEFDIEKARYQRLILMTDADVDGAHIRTLLLTLLYRHM 522
Query: 553 PKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEER 588
LIE GY+Y AQPPLY+++Y N D+ E +R
Sbjct: 523 RPLIEAGYVYAAQPPLYRVRYRGNTYDAMDEAERDR 558
Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 52/68 (76%)
Query: 766 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNA 825
QR+KGLGEMNP QLW+TTMNP R L ++ ++DA +AD++F LMGD V R++FI+ +A
Sbjct: 572 QRFKGLGEMNPDQLWDTTMNPENRVLKRITVEDAAAADRMFNILMGDAVGPRKQFIKDHA 631
Query: 826 LHAKNIDI 833
A+ +DI
Sbjct: 632 NDAEWVDI 639
>sp|P0DG05|GYRB_STRPQ DNA gyrase subunit B OS=Streptococcus pyogenes serotype M3 (strain
SSI-1) GN=gyrB PE=3 SV=1
Length = 650
Score = 522 bits (1344), Expect = e-147, Method: Compositional matrix adjust.
Identities = 271/573 (47%), Positives = 387/573 (67%), Gaps = 27/573 (4%)
Query: 19 YSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIY 78
Y AS IQ+LEGLEAVR RP MYIG T+ GLHHLV+EI+DN+IDE+LAG+ + I V I
Sbjct: 15 YDASQIQVLEGLEAVRMRPGMYIGSTAK-EGLHHLVWEIVDNSIDEALAGFASHIKVFIE 73
Query: 79 SDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGL 138
+DNSI++ D+GRGIP+DI++ K R A E V T LHAGGKF SYK+SGGLHG+G
Sbjct: 74 ADNSITVVDDGRGIPVDIQV----KTGRPAVETVFTVLHAGGKFGGGSYKVSGGLHGVGS 129
Query: 139 SCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIH 198
S VN LS L + + +N +IHY EF+ G + V+ +++IG T+ GT +H
Sbjct: 130 SVVNALSTQLDVRVYKNGQIHYQEFKRGAV------------VADLEVIGTTDVTGTTVH 177
Query: 199 FWVDEKIFS-NIEFHYEILKKRIRELSFLNNGVCITLIDER--IKKKEIFEFKGGTSGFV 255
F D +IF+ +F Y +L KRI+EL+FLN G+ I++ D+R ++++E F ++GG +V
Sbjct: 178 FTPDPEIFTETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGIGSYV 237
Query: 256 SYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTH 315
++N K V+ T G + I ++V+MQ+ SY E ++ F NNI +GGTH
Sbjct: 238 EFLNDKKDVIFETPIYTDG-----ELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTH 292
Query: 316 LTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLV 375
G R+ +TR IN Y ++N+ LK+++ + GED+REGLT V+S+K P+P+F QTK KL
Sbjct: 293 EQGFRAALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 352
Query: 376 SSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDDI 435
+SEV K + + FL ENP ++ I EK I A+++R AA++ RE+TRKK+ ++
Sbjct: 353 NSEVVKITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEIS 412
Query: 436 ELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKI 495
L KLADC + EL+IVEGDSAGGS K GR+R FQA+LP+RGK+LN+EKA +KI
Sbjct: 413 NLPGKLADCSSNDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKI 472
Query: 496 ILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKL 555
+ +E+I +L + +G G D F++ K RY +++IMTDAD+DGAHIR LLLT YR M +
Sbjct: 473 LANEEIRSLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPV 531
Query: 556 IEYGYIYIAQPPLYKIKYGNN-ECYLRDDIEEE 587
+E GY+YIAQPP+Y +K G+ + Y++ I++E
Sbjct: 532 LEAGYVYIAQPPIYGVKVGSEIKEYIQPGIDQE 564
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 47/63 (74%)
Query: 766 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNA 825
QRYKGLGEM+ QLWETTM+P R + +V + DA ADK+F LMGD VE RR FIE NA
Sbjct: 584 QRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEPRRDFIEENA 643
Query: 826 LHA 828
+++
Sbjct: 644 VYS 646
>sp|P0DG04|GYRB_STRP3 DNA gyrase subunit B OS=Streptococcus pyogenes serotype M3 (strain
ATCC BAA-595 / MGAS315) GN=gyrB PE=3 SV=1
Length = 650
Score = 522 bits (1344), Expect = e-147, Method: Compositional matrix adjust.
Identities = 271/573 (47%), Positives = 387/573 (67%), Gaps = 27/573 (4%)
Query: 19 YSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIY 78
Y AS IQ+LEGLEAVR RP MYIG T+ GLHHLV+EI+DN+IDE+LAG+ + I V I
Sbjct: 15 YDASQIQVLEGLEAVRMRPGMYIGSTAK-EGLHHLVWEIVDNSIDEALAGFASHIKVFIE 73
Query: 79 SDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGL 138
+DNSI++ D+GRGIP+DI++ K R A E V T LHAGGKF SYK+SGGLHG+G
Sbjct: 74 ADNSITVVDDGRGIPVDIQV----KTGRPAVETVFTVLHAGGKFGGGSYKVSGGLHGVGS 129
Query: 139 SCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIH 198
S VN LS L + + +N +IHY EF+ G + V+ +++IG T+ GT +H
Sbjct: 130 SVVNALSTQLDVRVYKNGQIHYQEFKRGAV------------VADLEVIGTTDVTGTTVH 177
Query: 199 FWVDEKIFS-NIEFHYEILKKRIRELSFLNNGVCITLIDER--IKKKEIFEFKGGTSGFV 255
F D +IF+ +F Y +L KRI+EL+FLN G+ I++ D+R ++++E F ++GG +V
Sbjct: 178 FTPDPEIFTETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGIGSYV 237
Query: 256 SYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTH 315
++N K V+ T G + I ++V+MQ+ SY E ++ F NNI +GGTH
Sbjct: 238 EFLNDKKDVIFETPIYTDG-----ELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTH 292
Query: 316 LTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLV 375
G R+ +TR IN Y ++N+ LK+++ + GED+REGLT V+S+K P+P+F QTK KL
Sbjct: 293 EQGFRAALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 352
Query: 376 SSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDDI 435
+SEV K + + FL ENP ++ I EK I A+++R AA++ RE+TRKK+ ++
Sbjct: 353 NSEVVKITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEIS 412
Query: 436 ELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKI 495
L KLADC + EL+IVEGDSAGGS K GR+R FQA+LP+RGK+LN+EKA +KI
Sbjct: 413 NLPGKLADCSSNDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKI 472
Query: 496 ILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKL 555
+ +E+I +L + +G G D F++ K RY +++IMTDAD+DGAHIR LLLT YR M +
Sbjct: 473 LANEEIRSLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPV 531
Query: 556 IEYGYIYIAQPPLYKIKYGNN-ECYLRDDIEEE 587
+E GY+YIAQPP+Y +K G+ + Y++ I++E
Sbjct: 532 LEAGYVYIAQPPIYGVKVGSEIKEYIQPGIDQE 564
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 47/63 (74%)
Query: 766 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNA 825
QRYKGLGEM+ QLWETTM+P R + +V + DA ADK+F LMGD VE RR FIE NA
Sbjct: 584 QRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEPRRDFIEENA 643
Query: 826 LHA 828
+++
Sbjct: 644 VYS 646
>sp|Q8CQK4|GYRB_STAES DNA gyrase subunit B OS=Staphylococcus epidermidis (strain ATCC
12228) GN=gyrB PE=3 SV=1
Length = 643
Score = 520 bits (1340), Expect = e-146, Method: Compositional matrix adjust.
Identities = 283/579 (48%), Positives = 393/579 (67%), Gaps = 28/579 (4%)
Query: 10 DIQDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGY 69
D+ +T +Y A IQ+LEGLEAVRKRP MYIG TS+ GLHHLV+EI+DN+IDE+LAGY
Sbjct: 7 DVNNT--DNYGAGQIQVLEGLEAVRKRPGMYIGSTSE-RGLHHLVWEIVDNSIDEALAGY 63
Query: 70 CTKINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKI 129
+ I V I DN I ++DNGRGIP+DI+ K R A E+++T LHAGGKF YK+
Sbjct: 64 ASHIEVVIEKDNWIKVTDNGRGIPVDIQ----EKMGRPAVEVILTVLHAGGKFGGGGYKV 119
Query: 130 SGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGD 189
SGGLHG+G S VN LS+ L++ ++RN I++ ++ GV Q +K IGD
Sbjct: 120 SGGLHGVGSSVVNALSQDLEVYVHRNGTIYHQAYKQGVPQ------------FDLKEIGD 167
Query: 190 TNKQGTKIHFWVDEKIFSNIE-FHYEILKKRIRELSFLNNGVCITL--IDERIKKKEIFE 246
T+K GT I F D++IF+ ++YE L+KRIREL+FLN G+ ITL E +++ +
Sbjct: 168 TDKTGTAIRFKADKEIFTETTVYNYETLQKRIRELAFLNKGIQITLKDEREEEVREDSYH 227
Query: 247 FKGGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNN 306
++GG +V +N++K +H I + K++I +++++Q+N+ Y N+L + NN
Sbjct: 228 YEGGIKSYVDLLNENKEPLHDEPIY-----IHQSKDDIEVEIALQYNSGYATNLLTYANN 282
Query: 307 ILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKF 366
I +GGTH G + +TR +N Y +++ +K+ K + GED REGLT V+SIK DP+F
Sbjct: 283 IHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKEDKDRLSGEDTREGLTAVVSIKHGDPQF 342
Query: 367 NSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELT 426
QTK KL +SEVR+ V+ + + FL ENP ++I EK I A+R+R AA+K RE+T
Sbjct: 343 EGQTKTKLGNSEVRQVVDRLFSEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVT 402
Query: 427 RKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLN 486
R+K+ +D L KLADC KNPE E+++VEGDSAGGS K GRD R QA+LPLRGK+LN
Sbjct: 403 RRKSALDVSSLPGKLADCSSKNPEESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILN 462
Query: 487 IEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLT 546
+EKAR ++I+ + +I +I+ G GI EF++ K RYH+I+IMTDAD+DGAHIR LLLT
Sbjct: 463 VEKARLDRILNNNEIRQMITAFGTGI-GGEFDISKARYHKIVIMTDADVDGAHIRTLLLT 521
Query: 547 FFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIE 585
FFYR M LIE GY+YIAQPPLYK+ G + Y+ +D E
Sbjct: 522 FFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 560
Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 53/67 (79%), Gaps = 1/67 (1%)
Query: 767 RYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNAL 826
RYKGLGEMN QLWETTMNP R +L+V+++DAI AD+ F LMGD VE RR+FIE NA+
Sbjct: 578 RYKGLGEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEMLMGDVVENRRQFIEDNAV 637
Query: 827 HAKNIDI 833
+A N+D
Sbjct: 638 YA-NLDF 643
>sp|Q5HK03|GYRB_STAEQ DNA gyrase subunit B OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=gyrB PE=3 SV=1
Length = 643
Score = 520 bits (1340), Expect = e-146, Method: Compositional matrix adjust.
Identities = 283/579 (48%), Positives = 393/579 (67%), Gaps = 28/579 (4%)
Query: 10 DIQDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGY 69
D+ +T +Y A IQ+LEGLEAVRKRP MYIG TS+ GLHHLV+EI+DN+IDE+LAGY
Sbjct: 7 DVNNT--DNYGAGQIQVLEGLEAVRKRPGMYIGSTSE-RGLHHLVWEIVDNSIDEALAGY 63
Query: 70 CTKINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKI 129
+ I V I DN I ++DNGRGIP+DI+ K R A E+++T LHAGGKF YK+
Sbjct: 64 ASHIEVVIEKDNWIKVTDNGRGIPVDIQ----EKMGRPAVEVILTVLHAGGKFGGGGYKV 119
Query: 130 SGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGD 189
SGGLHG+G S VN LS+ L++ ++RN I++ ++ GV Q +K IGD
Sbjct: 120 SGGLHGVGSSVVNALSQDLEVYVHRNGTIYHQAYKQGVPQ------------FDLKEIGD 167
Query: 190 TNKQGTKIHFWVDEKIFSNIE-FHYEILKKRIRELSFLNNGVCITL--IDERIKKKEIFE 246
T+K GT I F D++IF+ ++YE L+KRIREL+FLN G+ ITL E +++ +
Sbjct: 168 TDKTGTAIRFKADKEIFTETTVYNYETLQKRIRELAFLNKGIQITLKDEREEEVREDSYH 227
Query: 247 FKGGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNN 306
++GG +V +N++K +H I + K++I +++++Q+N+ Y N+L + NN
Sbjct: 228 YEGGIKSYVDLLNENKEPLHDEPIY-----IHQSKDDIEVEIALQYNSGYATNLLTYANN 282
Query: 307 ILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKF 366
I +GGTH G + +TR +N Y +++ +K+ K + GED REGLT V+SIK DP+F
Sbjct: 283 IHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKEDKDRLSGEDTREGLTAVVSIKHGDPQF 342
Query: 367 NSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELT 426
QTK KL +SEVR+ V+ + + FL ENP ++I EK I A+R+R AA+K RE+T
Sbjct: 343 EGQTKTKLGNSEVRQVVDRLFSEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVT 402
Query: 427 RKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLN 486
R+K+ +D L KLADC KNPE E+++VEGDSAGGS K GRD R QA+LPLRGK+LN
Sbjct: 403 RRKSALDVSSLPGKLADCSSKNPEESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILN 462
Query: 487 IEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLT 546
+EKAR ++I+ + +I +I+ G GI EF++ K RYH+I+IMTDAD+DGAHIR LLLT
Sbjct: 463 VEKARLDRILNNNEIRQMITAFGTGI-GGEFDISKARYHKIVIMTDADVDGAHIRTLLLT 521
Query: 547 FFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIE 585
FFYR M LIE GY+YIAQPPLYK+ G + Y+ +D E
Sbjct: 522 FFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE 560
Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 53/67 (79%), Gaps = 1/67 (1%)
Query: 767 RYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNAL 826
RYKGLGEMN QLWETTMNP R +L+V+++DAI AD+ F LMGD VE RR+FIE NA+
Sbjct: 578 RYKGLGEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEMLMGDVVENRRQFIEDNAV 637
Query: 827 HAKNIDI 833
+A N+D
Sbjct: 638 YA-NLDF 643
>sp|O08399|GYRB_TREPA DNA gyrase subunit B OS=Treponema pallidum (strain Nichols) GN=gyrB
PE=1 SV=1
Length = 637
Score = 517 bits (1332), Expect = e-145, Method: Compositional matrix adjust.
Identities = 271/586 (46%), Positives = 398/586 (67%), Gaps = 31/586 (5%)
Query: 19 YSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIY 78
YSASSI +LEGLEAVRKRP MYIG T GLHHLV+E++DN IDE++AGYC +I V +
Sbjct: 5 YSASSITVLEGLEAVRKRPGMYIGSTGP-NGLHHLVYEVVDNCIDEAMAGYCDRITVVLE 63
Query: 79 SDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGL 138
N + + DNGRGIP+D+ + SA E+V+T+LHAGGKF+K SYK+SGGLHG+G+
Sbjct: 64 QGNVVRVEDNGRGIPVDVHPHEG----VSALEVVLTKLHAGGKFDKKSYKVSGGLHGVGV 119
Query: 139 SCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIH 198
S VN LS ++++T+ R+ +Y +F G + ++P++ G + K+GT I
Sbjct: 120 SVVNALSLWVEVTVYRDGAEYYQKFNVG------------MPLAPVEKRGVSEKRGTIIR 167
Query: 199 FWVDEKIF-SNIEFHYEILKKRIRELSFLNNGVCITLIDERIK--KKEIFEFKGGTSGFV 255
+ D IF + + +++L R+REL+FLN+ V I L DER+ K+ F F+GG FV
Sbjct: 168 WQADPSIFKETVAYDFDVLLTRLRELAFLNSTVVIQLRDERLATAKQVEFAFEGGIRHFV 227
Query: 256 SYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTH 315
SY+N+ K VV G+K +++ ++V++Q+++ Y EN+ F N+I +GGTH
Sbjct: 228 SYLNRGKSVVPERPLYIEGSK-----SDVLVEVALQYHDGYTENVQSFVNDINTREGGTH 282
Query: 316 LTGLRSGITRAINKYIEENEFLKKSKIE----IIGEDIREGLTCVLSIKIPDPKFNSQTK 371
L G +S +TR N +++++ L K KIE ++GED+R GLT VLS+KIP+P+F QTK
Sbjct: 283 LEGFKSALTRVANDFLKKSPKLAK-KIEREEKLVGEDVRAGLTVVLSVKIPEPQFEGQTK 341
Query: 372 NKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNL 431
KL +SEVR V+ ++ + L + ++NPG I EK I A++R AAR+ +E R+K+
Sbjct: 342 TKLGNSEVRGIVDSLVGERLTLYFEQNPGVLTKILEKSIAEAQARLAARRAKEAARRKSG 401
Query: 432 IDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKAR 491
+D L KLADC K+P CE+YIVEGDSAGGS K+GRD + QA+LPL GK+LN+EK R
Sbjct: 402 MDSFGLPGKLADCSLKDPAKCEVYIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEKTR 461
Query: 492 FEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRK 551
+K++ +E++ +I+TLG G+ +D F+L ++RYH++IIM DAD+DG+HIR LLLTFF+R
Sbjct: 462 LDKVLHNEKLQPIIATLGTGVGKD-FDLTRIRYHKVIIMADADVDGSHIRTLLLTFFFRY 520
Query: 552 MPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKN 597
+P++IE GY+Y+A PPLY+I + E Y+ D E + + I K+
Sbjct: 521 LPQIIEAGYVYLAMPPLYRIAWSKKELYVYSDTERDEALESIGKKS 566
Score = 93.6 bits (231), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 65/93 (69%), Gaps = 6/93 (6%)
Query: 743 YTANNFYKIINYLRNEA------ENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKI 796
++ Y + R+EA ++ V QRYKGLGEM+ QLWETTMNP+ R +++V +
Sbjct: 542 WSKKELYVYSDTERDEALESIGKKSGVAVQRYKGLGEMDGTQLWETTMNPVRRKMMQVVL 601
Query: 797 KDAISADKIFMTLMGDNVELRRKFIELNALHAK 829
DA+ AD++F TLMG++VE RRKFIE NA++A+
Sbjct: 602 SDAVEADRVFSTLMGEDVEPRRKFIEENAIYAR 634
>sp|Q9ZFK1|GYRB_BORHE DNA gyrase subunit B OS=Borrelia hermsii GN=gyrB PE=3 SV=1
Length = 634
Score = 512 bits (1319), Expect = e-144, Method: Compositional matrix adjust.
Identities = 281/579 (48%), Positives = 393/579 (67%), Gaps = 27/579 (4%)
Query: 18 SYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTI 77
SY AS+IQ+L+GLEAVRKRP MYIG S GLHHLV+E++DN+IDE+LAG+C KI V I
Sbjct: 2 SYVASNIQVLKGLEAVRKRPGMYIGSVSI-NGLHHLVYEVVDNSIDEALAGFCDKIEVVI 60
Query: 78 YSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIG 137
SDNS++++DNGRGIP D+ + SA E+V+T+LH+GGKFNK +YK+SGGLHG+G
Sbjct: 61 NSDNSVTVNDNGRGIPTDVH----EEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVG 116
Query: 138 LSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKI 197
+S VN LS FL + ++R+ K+ + GI S + IIG ++ +GTK+
Sbjct: 117 ISVVNALSSFLAVIVSRDGKLFKQTYS------------RGIPTSEVDIIGVSSARGTKV 164
Query: 198 HFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEF--KGGTSGFV 255
F D +IF +E+ +E L KR+REL+FLN+ + I++ D R K++ EF +GG FV
Sbjct: 165 TFLADSEIFETLEYDFETLSKRLRELAFLNDKIRISIEDRRSGKEKFLEFYFEGGIKAFV 224
Query: 256 SYI-NKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGT 314
YI N SK + + F I +++ + V ++W Y+++IL F NNI +GGT
Sbjct: 225 DYITNNSKNIQNEPYF------IEGSCDDVIVSVGLKWTEGYSDHILSFVNNINTREGGT 278
Query: 315 HLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKL 374
H+ G +SG +A+++ +++ KK + +D +EGLT V+SIKIP+P+F QTK KL
Sbjct: 279 HVAGFKSGFLKAMSEAFRDSKISKKDVPSLTLDDFKEGLTAVISIKIPEPQFEGQTKGKL 338
Query: 375 VSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDD 434
+S V+K VE I+ L + +N E +I K I AAR+REAARK RE RKK+ +
Sbjct: 339 GNSYVKKIVETIVHDGLLKVIDDNLLEVDIILNKAIRAARAREAARKARESERKKSAFES 398
Query: 435 IELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEK 494
+ L KLADC KNP E+YIVEGDSAGGS K GRDR QA+LPL GK+LN+EK R +K
Sbjct: 399 LALPGKLADCASKNPAEREIYIVEGDSAGGSAKMGRDRFSQAILPLWGKMLNVEKTREDK 458
Query: 495 IILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPK 554
+I ++++ +I++LG G+ + F +EKLRYH+IIIM DAD+DG+HIR LLLTFF+R M +
Sbjct: 459 VITNDKLIPIIASLGAGVGK-TFYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRE 517
Query: 555 LIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKI 593
LIE G++YIA PPLYK+KY N E Y DD+E+E ++ I
Sbjct: 518 LIENGHVYIAMPPLYKLKYENREHYFYDDLEKEAFLGSI 556
Score = 102 bits (255), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 55/68 (80%)
Query: 766 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNA 825
QRYKGLGEMNP QLWETTMNP R + +KI DAI A+KIF+TLMGD+VE RR+FIE NA
Sbjct: 567 QRYKGLGEMNPTQLWETTMNPATRKMKLIKINDAIQAEKIFVTLMGDDVEPRREFIEQNA 626
Query: 826 LHAKNIDI 833
L N+D+
Sbjct: 627 LDVVNLDV 634
>sp|Q59192|PARE_BACSU DNA topoisomerase 4 subunit B OS=Bacillus subtilis (strain 168)
GN=parE PE=3 SV=2
Length = 655
Score = 512 bits (1319), Expect = e-144, Method: Compositional matrix adjust.
Identities = 266/566 (46%), Positives = 368/566 (65%), Gaps = 28/566 (4%)
Query: 15 QESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKIN 74
Q+ Y+ +IQ+LEGLEAVRKRP MYIG T D GLHHLV+EI+DN++DE LAG+ I
Sbjct: 5 QQFDYNEDAIQVLEGLEAVRKRPGMYIGST-DARGLHHLVYEIVDNSVDEVLAGHGDHII 63
Query: 75 VTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLH 134
V I+ DNSIS+ D GRG+P + HK + E+++T LHAGGKF + YK SGGLH
Sbjct: 64 VKIHKDNSISVQDRGRGMPTGM-----HKLGKPTPEVILTVLHAGGKFGQGGYKTSGGLH 118
Query: 135 GIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQG 194
G+G S VN LS +L +TI R+ ++ F G G V+ ++ IG T K G
Sbjct: 119 GVGASVVNALSEWLTVTIERDGFVYQQRFENG-----------GKPVTSLEKIGKTKKTG 167
Query: 195 TKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGF 254
T HF D +FS +++E L +R+RE +FL G+ I LIDER ++E+F ++ G F
Sbjct: 168 TLTHFKPDPTMFSTTTYNFETLSERLRESAFLLKGLKIELIDERNDQREVFYYENGIEAF 227
Query: 255 VSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGT 314
V+Y+N+ K V+ + + ++I +D + Q+N+ Y+ENIL F NN+ DGGT
Sbjct: 228 VAYLNEEKDVLSEVV------SFEGEHHSIEVDFAFQFNDGYSENILSFVNNVRTKDGGT 281
Query: 315 HLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDP--KFNSQTKN 372
H +G ++ +TRA N+Y + LK+ + G DIREGL+ ++S++IP+ +F QTK
Sbjct: 282 HESGAKTAMTRAFNEYARKVALLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKG 341
Query: 373 KLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTR--KKN 430
KL +SE R V+ I+ + L FL+EN + L+ +K I+A+++REAARK RE R KK
Sbjct: 342 KLGTSEARSAVDAIVSEQLAYFLEENRDTATLLVKKAIKASQAREAARKAREEARSGKKR 401
Query: 431 LIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKA 490
+ LS KL +NP ELY+VEGDSAGGS KQGRDRRFQAVLPLRGKV+N EKA
Sbjct: 402 KKSEATLSGKLTPAGSRNPAKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKA 461
Query: 491 RFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYR 550
+ I +E+I T+I +G G+ D F+++ + Y +IIIMTDAD DGAHI+ LLLTFFYR
Sbjct: 462 KLADIFKNEEINTIIHAIGGGVGAD-FSIDDINYDKIIIMTDADTDGAHIQVLLLTFFYR 520
Query: 551 KMPKLIEYGYIYIAQPPLYKIKYGNN 576
M LIE+G ++IA PPLYK+ G+
Sbjct: 521 YMKPLIEHGKVFIALPPLYKVSKGSG 546
Score = 84.3 bits (207), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 44/59 (74%)
Query: 766 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELN 824
QRYKGLGEMN QLWETTMNP R L++VKI DA ++ TLMGD VE RRK+IE N
Sbjct: 574 QRYKGLGEMNADQLWETTMNPESRTLVRVKIDDAARVERRVTTLMGDKVEPRRKWIEKN 632
>sp|P66937|GYRB_STAAN DNA gyrase subunit B OS=Staphylococcus aureus (strain N315) GN=gyrB
PE=1 SV=2
Length = 644
Score = 506 bits (1303), Expect = e-142, Method: Compositional matrix adjust.
Identities = 299/658 (45%), Positives = 425/658 (64%), Gaps = 39/658 (5%)
Query: 10 DIQDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGY 69
D+ +T +Y A IQ+LEGLEAVRKRP MYIG TS+ GLHHLV+EI+DN+IDE+LAGY
Sbjct: 7 DVNNT--DNYGAGQIQVLEGLEAVRKRPGMYIGSTSE-RGLHHLVWEIVDNSIDEALAGY 63
Query: 70 CTKINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKI 129
KI V I DN I ++DNGRGIP+DI+ K R A E+++T LHAGGKF YK+
Sbjct: 64 ANKIEVVIEKDNWIKVTDNGRGIPVDIQ----EKMGRPAVEVILTVLHAGGKFGGGGYKV 119
Query: 130 SGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGD 189
SGGLHG+G S VN LS+ L++ ++RN+ I++ ++ GV Q +K +G
Sbjct: 120 SGGLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQ------------FDLKEVGT 167
Query: 190 TNKQGTKIHFWVDEKIFSNIE-FHYEILKKRIRELSFLNNGVCITLIDERIK---KKEIF 245
T+K GT I F D +IF+ ++YE L++RIREL+FLN G+ ITL DER + +++ +
Sbjct: 168 TDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSY 227
Query: 246 EFKGGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTN 305
++GG +V +N++K +H I + K++I +++++Q+N+ Y N+L + N
Sbjct: 228 HYEGGIKSYVELLNENKEPIHDEPIY-----IHQSKDDIEVEIAIQYNSGYATNLLTYAN 282
Query: 306 NILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPK 365
NI +GGTH G + +TR +N Y ++ +K+ K + GED REG+T ++SIK DP+
Sbjct: 283 NIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQ 342
Query: 366 FNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTREL 425
F QTK KL +SEVR+ V+++ + FL ENP ++ + EK I AAR+R AA+K RE+
Sbjct: 343 FEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREV 402
Query: 426 TRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVL 485
TR+K+ +D L KLADC K+PE CE+++VEGDSAGGS K GRD R QA+LPLRGK+L
Sbjct: 403 TRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKIL 462
Query: 486 NIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLL 545
N+EKAR ++I+ + +I +I+ G GI D F+L K RYH+I+IMTDAD+DGAHIR LLL
Sbjct: 463 NVEKARLDRILNNNEIRQMITAFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLL 521
Query: 546 TFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIEN 605
TFFYR M LIE GY+YIAQPPLYK+ G + Y+ +D E ++ LK SI
Sbjct: 522 TFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELDK--LKSELNPTPKWSIAR 579
Query: 606 GDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNL---DTRENAEQF 660
+ E +L + T+ HR ++ + + AI +D + D EN QF
Sbjct: 580 YKGLGEMNADQL---WETTMNPEHR--ALLQVKLEDAIEADQTFEMLMGDVVENRRQF 632
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/67 (67%), Positives = 53/67 (79%), Gaps = 1/67 (1%)
Query: 767 RYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNAL 826
RYKGLGEMN QLWETTMNP R LL+VK++DAI AD+ F LMGD VE RR+FIE NA+
Sbjct: 579 RYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAV 638
Query: 827 HAKNIDI 833
+A N+D
Sbjct: 639 YA-NLDF 644
>sp|P66936|GYRB_STAAM DNA gyrase subunit B OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=gyrB PE=1 SV=2
Length = 644
Score = 506 bits (1303), Expect = e-142, Method: Compositional matrix adjust.
Identities = 299/658 (45%), Positives = 425/658 (64%), Gaps = 39/658 (5%)
Query: 10 DIQDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGY 69
D+ +T +Y A IQ+LEGLEAVRKRP MYIG TS+ GLHHLV+EI+DN+IDE+LAGY
Sbjct: 7 DVNNT--DNYGAGQIQVLEGLEAVRKRPGMYIGSTSE-RGLHHLVWEIVDNSIDEALAGY 63
Query: 70 CTKINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKI 129
KI V I DN I ++DNGRGIP+DI+ K R A E+++T LHAGGKF YK+
Sbjct: 64 ANKIEVVIEKDNWIKVTDNGRGIPVDIQ----EKMGRPAVEVILTVLHAGGKFGGGGYKV 119
Query: 130 SGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGD 189
SGGLHG+G S VN LS+ L++ ++RN+ I++ ++ GV Q +K +G
Sbjct: 120 SGGLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQ------------FDLKEVGT 167
Query: 190 TNKQGTKIHFWVDEKIFSNIE-FHYEILKKRIRELSFLNNGVCITLIDERIK---KKEIF 245
T+K GT I F D +IF+ ++YE L++RIREL+FLN G+ ITL DER + +++ +
Sbjct: 168 TDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSY 227
Query: 246 EFKGGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTN 305
++GG +V +N++K +H I + K++I +++++Q+N+ Y N+L + N
Sbjct: 228 HYEGGIKSYVELLNENKEPIHDEPIY-----IHQSKDDIEVEIAIQYNSGYATNLLTYAN 282
Query: 306 NILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPK 365
NI +GGTH G + +TR +N Y ++ +K+ K + GED REG+T ++SIK DP+
Sbjct: 283 NIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQ 342
Query: 366 FNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTREL 425
F QTK KL +SEVR+ V+++ + FL ENP ++ + EK I AAR+R AA+K RE+
Sbjct: 343 FEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREV 402
Query: 426 TRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVL 485
TR+K+ +D L KLADC K+PE CE+++VEGDSAGGS K GRD R QA+LPLRGK+L
Sbjct: 403 TRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKIL 462
Query: 486 NIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLL 545
N+EKAR ++I+ + +I +I+ G GI D F+L K RYH+I+IMTDAD+DGAHIR LLL
Sbjct: 463 NVEKARLDRILNNNEIRQMITAFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLL 521
Query: 546 TFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIEN 605
TFFYR M LIE GY+YIAQPPLYK+ G + Y+ +D E ++ LK SI
Sbjct: 522 TFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELDK--LKSELNPTPKWSIAR 579
Query: 606 GDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNL---DTRENAEQF 660
+ E +L + T+ HR ++ + + AI +D + D EN QF
Sbjct: 580 YKGLGEMNADQL---WETTMNPEHR--ALLQVKLEDAIEADQTFEMLMGDVVENRRQF 632
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/67 (67%), Positives = 53/67 (79%), Gaps = 1/67 (1%)
Query: 767 RYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNAL 826
RYKGLGEMN QLWETTMNP R LL+VK++DAI AD+ F LMGD VE RR+FIE NA+
Sbjct: 579 RYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAV 638
Query: 827 HAKNIDI 833
+A N+D
Sbjct: 639 YA-NLDF 644
>sp|P0A4M0|GYRB_STRR6 DNA gyrase subunit B OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=gyrB PE=3 SV=1
Length = 648
Score = 506 bits (1302), Expect = e-142, Method: Compositional matrix adjust.
Identities = 276/569 (48%), Positives = 388/569 (68%), Gaps = 26/569 (4%)
Query: 10 DIQDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGY 69
+I++ Q Y AS IQ+LEGLEAVR RP MYIG TS GLHHLV+EI+DN+IDE+LAG+
Sbjct: 4 EIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSK-EGLHHLVWEIVDNSIDEALAGF 62
Query: 70 CTKINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKI 129
+ I V I D+SI++ D+GRGIP+DI+ K R A E V T LHAGGKF YK+
Sbjct: 63 ASHIQVFIEPDDSITVVDDGRGIPVDIQ----EKTGRPAVETVFTVLHAGGKFGGGGYKV 118
Query: 130 SGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGD 189
SGGLHG+G S VN LS L + +++N KIHY E+R G + V+ ++I+GD
Sbjct: 119 SGGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHV------------VADLEIVGD 166
Query: 190 TNKQGTKIHFWVDEKIFSNIE-FHYEILKKRIRELSFLNNGVCITLIDER--IKKKEIFE 246
T+K GT +HF D KIF+ F ++ L KRI+EL+FLN G+ I++ D+R +++ + +
Sbjct: 167 TDKTGTTVHFTPDPKIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYH 226
Query: 247 FKGGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNN 306
++GG + +V YIN++K V+ T G + ++I ++V+MQ+ Y+EN++ F NN
Sbjct: 227 YEGGIASYVEYINENKDVIFDTPIYTDG-----EMDDITVEVAMQYTTGYHENVMSFANN 281
Query: 307 ILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKF 366
I +GGTH G R+ +TR IN Y +N+ LK ++ + GED+REGLT V+S+K P+P+F
Sbjct: 282 IHTHEGGTHEQGFRTALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQF 341
Query: 367 NSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELT 426
QTK KL +SEV K + + DFL ENP +K I EK I AA++R AA++ RE+T
Sbjct: 342 EGQTKTKLGNSEVVKITNRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVT 401
Query: 427 RKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLN 486
RKK+ ++ L KLADC NP EL+IVEGDSAGGS K GR+R FQA+LP+RGK+LN
Sbjct: 402 RKKSGLEISNLPGKLADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILN 461
Query: 487 IEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLT 546
+EKA +KI+ +E+I +L + +G G EF++ K RY ++++MTDAD+DGAHIR LLLT
Sbjct: 462 VEKASMDKILANEEIRSLFTAMGTGFGA-EFDVSKARYQKLVLMTDADVDGAHIRTLLLT 520
Query: 547 FFYRKMPKLIEYGYIYIAQPPLYKIKYGN 575
YR M ++E GY+YIAQPP+Y +K G+
Sbjct: 521 LIYRYMKPILEAGYVYIAQPPIYGVKVGS 549
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 712 YKKLVSIISTFKKIIGKGVIIQKSIGEKIKKY---TANNFYKIINYLR--NEAENMVIKQ 766
Y+ + I+ I + I +G +IK+Y A+ K+ L +E Q
Sbjct: 523 YRYMKPILEAGYVYIAQPPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQ 582
Query: 767 RYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNAL 826
RYKGLGEM+ QLWETTM+P R + +V + DA ADKIF LMGD VE RR+FIE NA+
Sbjct: 583 RYKGLGEMDDHQLWETTMDPEHRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAV 642
Query: 827 HA 828
++
Sbjct: 643 YS 644
>sp|P0A4L9|GYRB_STRPN DNA gyrase subunit B OS=Streptococcus pneumoniae serotype 4 (strain
ATCC BAA-334 / TIGR4) GN=gyrB PE=3 SV=1
Length = 648
Score = 506 bits (1302), Expect = e-142, Method: Compositional matrix adjust.
Identities = 276/569 (48%), Positives = 388/569 (68%), Gaps = 26/569 (4%)
Query: 10 DIQDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGY 69
+I++ Q Y AS IQ+LEGLEAVR RP MYIG TS GLHHLV+EI+DN+IDE+LAG+
Sbjct: 4 EIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSK-EGLHHLVWEIVDNSIDEALAGF 62
Query: 70 CTKINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKI 129
+ I V I D+SI++ D+GRGIP+DI+ K R A E V T LHAGGKF YK+
Sbjct: 63 ASHIQVFIEPDDSITVVDDGRGIPVDIQ----EKTGRPAVETVFTVLHAGGKFGGGGYKV 118
Query: 130 SGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGD 189
SGGLHG+G S VN LS L + +++N KIHY E+R G + V+ ++I+GD
Sbjct: 119 SGGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHV------------VADLEIVGD 166
Query: 190 TNKQGTKIHFWVDEKIFSNIE-FHYEILKKRIRELSFLNNGVCITLIDER--IKKKEIFE 246
T+K GT +HF D KIF+ F ++ L KRI+EL+FLN G+ I++ D+R +++ + +
Sbjct: 167 TDKTGTTVHFTPDPKIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYH 226
Query: 247 FKGGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNN 306
++GG + +V YIN++K V+ T G + ++I ++V+MQ+ Y+EN++ F NN
Sbjct: 227 YEGGIASYVEYINENKDVIFDTPIYTDG-----EMDDITVEVAMQYTTGYHENVMSFANN 281
Query: 307 ILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKF 366
I +GGTH G R+ +TR IN Y +N+ LK ++ + GED+REGLT V+S+K P+P+F
Sbjct: 282 IHTHEGGTHEQGFRTALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQF 341
Query: 367 NSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELT 426
QTK KL +SEV K + + DFL ENP +K I EK I AA++R AA++ RE+T
Sbjct: 342 EGQTKTKLGNSEVVKITNRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVT 401
Query: 427 RKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLN 486
RKK+ ++ L KLADC NP EL+IVEGDSAGGS K GR+R FQA+LP+RGK+LN
Sbjct: 402 RKKSGLEISNLPGKLADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILN 461
Query: 487 IEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLT 546
+EKA +KI+ +E+I +L + +G G EF++ K RY ++++MTDAD+DGAHIR LLLT
Sbjct: 462 VEKASMDKILANEEIRSLFTAMGTGFGA-EFDVSKARYQKLVLMTDADVDGAHIRTLLLT 520
Query: 547 FFYRKMPKLIEYGYIYIAQPPLYKIKYGN 575
YR M ++E GY+YIAQPP+Y +K G+
Sbjct: 521 LIYRYMKPILEAGYVYIAQPPIYGVKVGS 549
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 712 YKKLVSIISTFKKIIGKGVIIQKSIGEKIKKY---TANNFYKIINYLR--NEAENMVIKQ 766
Y+ + I+ I + I +G +IK+Y A+ K+ L +E Q
Sbjct: 523 YRYMKPILEAGYVYIAQPPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQ 582
Query: 767 RYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNAL 826
RYKGLGEM+ QLWETTM+P R + +V + DA ADKIF LMGD VE RR+FIE NA+
Sbjct: 583 RYKGLGEMDDHQLWETTMDPEHRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAV 642
Query: 827 HA 828
++
Sbjct: 643 YS 644
>sp|Q6GKU0|GYRB_STAAR DNA gyrase subunit B OS=Staphylococcus aureus (strain MRSA252)
GN=gyrB PE=3 SV=3
Length = 644
Score = 505 bits (1300), Expect = e-142, Method: Compositional matrix adjust.
Identities = 298/658 (45%), Positives = 425/658 (64%), Gaps = 39/658 (5%)
Query: 10 DIQDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGY 69
D+ +T +Y A IQ+LEGLEAVRKRP MYIG TS+ GLHHLV+EI+DN+IDE+LAGY
Sbjct: 7 DVNNT--DNYGAGQIQVLEGLEAVRKRPGMYIGSTSE-RGLHHLVWEIVDNSIDEALAGY 63
Query: 70 CTKINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKI 129
+I V I DN I ++DNGRGIP+DI+ K R A E+++T LHAGGKF YK+
Sbjct: 64 ANQIEVVIEKDNWIKVTDNGRGIPVDIQ----EKMGRPAVEVILTVLHAGGKFGGGGYKV 119
Query: 130 SGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGD 189
SGGLHG+G S VN LS+ L++ ++RN+ I++ ++ GV Q +K +G
Sbjct: 120 SGGLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQ------------FDLKEVGT 167
Query: 190 TNKQGTKIHFWVDEKIFSNIE-FHYEILKKRIRELSFLNNGVCITLIDERIK---KKEIF 245
T+K GT I F D +IF+ ++YE L++RIREL+FLN G+ ITL DER + +++ +
Sbjct: 168 TDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSY 227
Query: 246 EFKGGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTN 305
++GG +V +N++K +H I + K++I +++++Q+N+ Y N+L + N
Sbjct: 228 HYEGGIKSYVELLNENKEPIHDEPIY-----IHQSKDDIEVEIAIQYNSGYATNLLTYAN 282
Query: 306 NILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPK 365
NI +GGTH G + +TR +N Y ++ +K+ K + GED REG+T ++SIK DP+
Sbjct: 283 NIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEDKDRLSGEDTREGMTAIISIKHGDPQ 342
Query: 366 FNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTREL 425
F QTK KL +SEVR+ V+++ + FL ENP ++ + EK I AAR+R AA+K RE+
Sbjct: 343 FEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREV 402
Query: 426 TRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVL 485
TR+K+ +D L KLADC K+PE CE+++VEGDSAGGS K GRD R QA+LPLRGK+L
Sbjct: 403 TRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKIL 462
Query: 486 NIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLL 545
N+EKAR ++I+ + +I +I+ G GI D F+L K RYH+I+IMTDAD+DGAHIR LLL
Sbjct: 463 NVEKARLDRILNNNEIRQMITAFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLL 521
Query: 546 TFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIEN 605
TFFYR M LIE GY+YIAQPPLYK+ G + Y+ +D E ++ LK SI
Sbjct: 522 TFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELDK--LKSELNPTPKWSIAR 579
Query: 606 GDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNL---DTRENAEQF 660
+ E +L + T+ HR ++ + + AI +D + D EN QF
Sbjct: 580 YKGLGEMNADQL---WETTMNPEHR--ALLQVKLEDAIEADQTFEMLMGDVVENRRQF 632
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/67 (67%), Positives = 53/67 (79%), Gaps = 1/67 (1%)
Query: 767 RYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNAL 826
RYKGLGEMN QLWETTMNP R LL+VK++DAI AD+ F LMGD VE RR+FIE NA+
Sbjct: 579 RYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAV 638
Query: 827 HAKNIDI 833
+A N+D
Sbjct: 639 YA-NLDF 644
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.139 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 305,788,717
Number of Sequences: 539616
Number of extensions: 13734133
Number of successful extensions: 45327
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 178
Number of HSP's that attempted gapping in prelim test: 43826
Number of HSP's gapped (non-prelim): 759
length of query: 833
length of database: 191,569,459
effective HSP length: 126
effective length of query: 707
effective length of database: 123,577,843
effective search space: 87369535001
effective search space used: 87369535001
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)