Query psy13357
Match_columns 833
No_of_seqs 280 out of 1761
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 17:24:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13357.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13357hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0187 GyrB Type IIA topoisom 100.0 2E-226 5E-231 1887.7 57.2 630 16-833 3-635 (635)
2 PRK14939 gyrB DNA gyrase subun 100.0 9E-210 2E-214 1829.2 70.5 753 16-833 4-756 (756)
3 PTZ00109 DNA gyrase subunit b; 100.0 2E-204 3E-209 1777.3 56.0 688 17-827 98-901 (903)
4 TIGR01058 parE_Gpos DNA topois 100.0 4E-200 9E-205 1734.8 60.1 622 17-828 3-630 (637)
5 PRK05559 DNA topoisomerase IV 100.0 9E-190 2E-194 1653.3 60.3 621 16-828 5-628 (631)
6 PRK05644 gyrB DNA gyrase subun 100.0 2E-189 3E-194 1651.5 60.5 631 17-833 6-638 (638)
7 TIGR01055 parE_Gneg DNA topois 100.0 1E-187 2E-192 1631.1 56.4 616 17-826 2-623 (625)
8 TIGR01059 gyrB DNA gyrase, B s 100.0 3E-184 6E-189 1616.7 60.4 648 19-833 1-654 (654)
9 PHA02569 39 DNA topoisomerase 100.0 2E-176 3E-181 1528.1 53.9 570 22-823 2-602 (602)
10 smart00433 TOP2c Topoisomerase 100.0 4E-175 1E-179 1522.7 53.5 589 49-825 1-593 (594)
11 PTZ00108 DNA topoisomerase 2-l 100.0 4E-170 9E-175 1549.0 57.6 597 21-826 7-649 (1388)
12 PLN03128 DNA topoisomerase 2; 100.0 2E-163 5E-168 1481.6 55.8 527 21-591 4-571 (1135)
13 PLN03237 DNA topoisomerase 2; 100.0 2E-159 4E-164 1448.0 54.8 523 21-591 29-596 (1465)
14 KOG0355|consensus 100.0 4E-104 8E-109 908.4 29.9 597 21-826 5-637 (842)
15 cd03366 TOPRIM_TopoIIA_GyrB TO 100.0 9.1E-58 2E-62 421.1 11.1 114 452-566 1-114 (114)
16 cd01030 TOPRIM_TopoIIA_like TO 100.0 2.2E-56 4.9E-61 414.1 10.3 115 452-566 1-115 (115)
17 cd03365 TOPRIM_TopoIIA TOPRIM_ 100.0 7E-53 1.5E-57 393.0 8.2 115 452-566 1-120 (120)
18 cd00822 TopoII_Trans_DNA_gyras 100.0 8.5E-42 1.8E-46 342.9 18.5 172 249-425 1-172 (172)
19 PF00204 DNA_gyraseB: DNA gyra 100.0 4.2E-39 9.2E-44 323.7 18.3 173 250-425 1-173 (173)
20 PF00986 DNA_gyraseB_C: DNA gy 100.0 2.4E-33 5.1E-38 234.7 4.7 63 760-822 3-65 (65)
21 cd03481 TopoIIA_Trans_ScTopoII 100.0 5.2E-29 1.1E-33 245.3 13.5 121 285-414 32-152 (153)
22 PRK00095 mutL DNA mismatch rep 99.9 6.8E-24 1.5E-28 251.1 25.7 303 24-397 3-327 (617)
23 TIGR01052 top6b DNA topoisomer 99.9 1.4E-22 3.1E-27 230.8 13.1 282 23-365 3-307 (488)
24 COG1389 DNA topoisomerase VI, 99.9 1.9E-22 4.1E-27 221.6 6.8 285 23-367 11-319 (538)
25 PRK04184 DNA topoisomerase VI 99.8 4.7E-20 1E-24 212.3 12.4 304 24-393 12-331 (535)
26 TIGR00585 mutl DNA mismatch re 99.7 7.7E-16 1.7E-20 168.9 22.8 275 24-367 3-301 (312)
27 PRK14867 DNA topoisomerase VI 99.6 6.3E-16 1.4E-20 181.4 12.4 191 22-238 10-211 (659)
28 COG0323 MutL DNA mismatch repa 99.6 6.6E-14 1.4E-18 166.3 18.4 291 48-399 22-334 (638)
29 PRK14868 DNA topoisomerase VI 99.6 1.6E-14 3.5E-19 169.9 12.5 252 22-323 20-286 (795)
30 PRK14939 gyrB DNA gyrase subun 99.1 1.2E-11 2.5E-16 148.5 -1.4 79 730-813 536-623 (756)
31 PF01751 Toprim: Toprim domain 99.1 1.3E-10 2.9E-15 106.7 5.6 98 453-565 1-99 (100)
32 KOG1978|consensus 98.9 3.5E-09 7.7E-14 123.0 8.5 175 48-253 19-208 (672)
33 PF02518 HATPase_c: Histidine 98.8 4.4E-09 9.5E-14 97.2 4.6 86 48-152 4-92 (111)
34 KOG1979|consensus 98.8 1.2E-08 2.6E-13 116.2 8.7 157 49-237 27-197 (694)
35 PRK05218 heat shock protein 90 98.8 3.6E-07 7.8E-12 109.1 20.8 146 50-224 27-199 (613)
36 PF13589 HATPase_c_3: Histidin 98.7 2.5E-09 5.4E-14 103.9 0.3 97 50-164 3-106 (137)
37 cd00329 TopoII_MutL_Trans MutL 98.7 5.5E-08 1.2E-12 88.8 7.3 98 253-374 3-106 (107)
38 PRK14083 HSP90 family protein; 98.2 4.6E-06 9.9E-11 99.2 8.8 158 50-236 24-196 (601)
39 KOG1977|consensus 98.0 3.9E-06 8.5E-11 97.4 3.7 170 34-239 12-196 (1142)
40 cd00075 HATPase_c Histidine ki 97.9 3E-05 6.5E-10 67.7 6.8 80 50-148 1-83 (103)
41 PTZ00272 heat shock protein 83 97.9 2.7E-05 5.9E-10 93.9 7.8 156 51-235 27-206 (701)
42 smart00387 HATPase_c Histidine 97.6 0.00017 3.7E-09 64.0 6.4 84 49-151 5-91 (111)
43 COG0326 HtpG Molecular chapero 97.5 8.1E-05 1.8E-09 87.6 4.7 135 54-207 32-186 (623)
44 PTZ00130 heat shock protein 90 97.2 0.0016 3.5E-08 79.3 10.4 155 54-236 93-272 (814)
45 PF13581 HATPase_c_2: Histidin 97.1 0.0023 5E-08 60.4 8.8 89 50-162 32-124 (125)
46 PRK04069 serine-protein kinase 97.0 0.0026 5.6E-08 63.6 8.6 91 49-158 42-136 (161)
47 PRK15053 dpiB sensor histidine 96.9 0.0021 4.5E-08 75.4 8.2 82 48-148 431-517 (545)
48 COG2205 KdpD Osmosensitive K+ 96.8 0.0013 2.8E-08 79.2 5.6 77 52-146 774-855 (890)
49 TIGR02938 nifL_nitrog nitrogen 96.7 0.0038 8.2E-08 70.9 8.3 80 50-148 388-472 (494)
50 PRK11086 sensory histidine kin 96.6 0.002 4.2E-08 75.0 5.0 77 49-147 433-512 (542)
51 TIGR01925 spIIAB anti-sigma F 96.6 0.0093 2E-07 57.3 8.7 82 48-151 38-123 (137)
52 TIGR01386 cztS_silS_copS heavy 96.6 0.0054 1.2E-07 69.5 8.0 82 49-148 353-437 (457)
53 PRK10604 sensor protein RstB; 96.5 0.0046 9.9E-08 71.0 7.1 80 49-148 319-401 (433)
54 COG3290 CitA Signal transducti 96.5 0.0031 6.8E-08 73.3 5.4 79 50-150 428-511 (537)
55 COG3920 Signal transduction hi 96.4 0.013 2.8E-07 61.9 8.8 95 38-166 112-216 (221)
56 PRK09470 cpxA two-component se 96.4 0.0062 1.3E-07 69.3 6.8 79 49-147 353-434 (461)
57 PRK10549 signal transduction h 96.3 0.0047 1E-07 70.6 5.4 81 50-148 353-436 (466)
58 PRK11006 phoR phosphate regulo 96.3 0.0074 1.6E-07 68.9 7.0 82 49-148 317-401 (430)
59 TIGR01924 rsbW_low_gc serine-p 96.3 0.029 6.2E-07 56.1 10.3 95 49-162 42-140 (159)
60 PRK03660 anti-sigma F factor; 96.2 0.034 7.5E-07 53.8 9.9 83 49-153 39-125 (146)
61 PRK10364 sensor protein ZraS; 96.1 0.0083 1.8E-07 69.0 6.4 76 49-148 348-426 (457)
62 PRK10337 sensor protein QseC; 96.0 0.0094 2E-07 68.0 6.0 77 50-148 353-429 (449)
63 PRK09303 adaptive-response sen 96.0 0.013 2.8E-07 66.3 6.8 80 49-148 272-355 (380)
64 PRK11073 glnL nitrogen regulat 95.9 0.021 4.5E-07 62.8 8.1 76 49-147 237-325 (348)
65 PRK09467 envZ osmolarity senso 95.7 0.02 4.3E-07 65.0 6.8 77 50-148 332-411 (435)
66 PRK09835 sensor kinase CusS; P 95.5 0.027 5.8E-07 64.6 7.1 82 49-148 375-459 (482)
67 COG4191 Signal transduction hi 95.4 0.031 6.7E-07 65.8 7.2 51 49-99 497-550 (603)
68 PRK10815 sensor protein PhoQ; 95.4 0.023 4.9E-07 66.6 6.2 75 50-148 379-456 (485)
69 TIGR03785 marine_sort_HK prote 95.3 0.03 6.6E-07 68.7 6.9 82 49-148 597-681 (703)
70 TIGR02916 PEP_his_kin putative 95.3 0.039 8.4E-07 67.3 7.8 76 49-148 579-658 (679)
71 PRK10755 sensor protein BasS/P 95.3 0.029 6.4E-07 62.0 6.2 77 50-148 248-327 (356)
72 COG3850 NarQ Signal transducti 95.2 0.03 6.5E-07 65.1 6.2 46 50-98 482-530 (574)
73 COG0642 BaeS Signal transducti 95.2 0.026 5.7E-07 59.4 5.3 47 49-98 228-277 (336)
74 PRK11100 sensory histidine kin 95.1 0.037 7.9E-07 63.0 6.3 81 49-148 368-451 (475)
75 TIGR02966 phoR_proteo phosphat 95.0 0.041 8.9E-07 59.0 6.3 82 49-148 229-313 (333)
76 PRK15347 two component system 95.0 0.037 8.1E-07 69.1 6.7 77 49-148 513-592 (921)
77 PRK11466 hybrid sensory histid 94.9 0.039 8.5E-07 69.0 6.6 78 49-149 561-641 (914)
78 PRK11644 sensory histidine kin 94.8 0.078 1.7E-06 62.4 8.2 43 50-95 411-456 (495)
79 PRK11360 sensory histidine kin 94.6 0.079 1.7E-06 61.7 7.6 76 49-148 500-579 (607)
80 PRK13837 two-component VirA-li 94.4 0.063 1.4E-06 67.0 6.5 76 49-148 560-653 (828)
81 PRK10600 nitrate/nitrite senso 94.2 0.17 3.6E-06 60.3 9.2 43 50-95 470-515 (569)
82 PRK10490 sensor protein KdpD; 94.0 0.086 1.9E-06 66.5 6.7 80 49-148 778-860 (895)
83 PRK13560 hypothetical protein; 93.8 0.16 3.5E-06 62.0 8.5 46 50-95 712-762 (807)
84 COG4585 Signal transduction hi 93.6 0.1 2.2E-06 58.6 5.8 47 48-97 278-327 (365)
85 TIGR02956 TMAO_torS TMAO reduc 93.6 0.089 1.9E-06 66.2 5.7 82 48-150 578-663 (968)
86 PRK10618 phosphotransfer inter 93.4 0.29 6.4E-06 61.7 9.7 81 49-149 565-651 (894)
87 PRK11091 aerobic respiration c 93.4 0.11 2.4E-06 64.1 6.0 82 49-148 398-483 (779)
88 COG3852 NtrB Signal transducti 93.2 0.11 2.4E-06 57.0 4.9 58 37-99 233-306 (363)
89 COG2172 RsbW Anti-sigma regula 93.2 0.45 9.7E-06 47.2 8.7 84 49-156 40-130 (146)
90 PRK10841 hybrid sensory kinase 92.8 0.093 2E-06 66.4 4.2 81 49-148 562-645 (924)
91 PRK11107 hybrid sensory histid 92.5 0.16 3.5E-06 63.4 5.8 82 50-148 409-496 (919)
92 PRK10547 chemotaxis protein Ch 92.4 0.21 4.5E-06 60.9 6.3 43 55-97 391-446 (670)
93 PRK13557 histidine kinase; Pro 92.4 0.34 7.3E-06 56.1 7.9 78 49-148 277-372 (540)
94 PRK09959 hybrid sensory histid 92.2 0.23 5E-06 64.3 6.8 83 49-150 828-916 (1197)
95 COG5000 NtrY Signal transducti 92.1 0.2 4.3E-06 59.3 5.4 79 41-142 593-679 (712)
96 PRK13559 hypothetical protein; 91.8 0.54 1.2E-05 52.1 8.4 46 49-94 267-318 (361)
97 cd00188 TOPRIM Topoisomerase-p 91.5 0.43 9.3E-06 40.2 5.6 71 453-549 2-72 (83)
98 KOG0787|consensus 89.9 0.41 8.9E-06 53.8 5.0 105 27-150 243-360 (414)
99 COG3851 UhpB Signal transducti 88.2 0.75 1.6E-05 51.6 5.4 44 49-95 410-456 (497)
100 COG5002 VicK Signal transducti 87.6 0.43 9.3E-06 53.3 3.2 92 32-143 325-421 (459)
101 COG4564 Signal transduction hi 87.0 1.5 3.2E-05 48.8 6.7 66 30-98 330-408 (459)
102 PRK10935 nitrate/nitrite senso 86.1 1.3 2.9E-05 52.1 6.5 43 50-95 472-518 (565)
103 COG4192 Signal transduction hi 85.5 1.1 2.4E-05 51.6 5.0 79 49-150 564-646 (673)
104 PF14501 HATPase_c_5: GHKL dom 85.0 6.3 0.00014 35.9 9.0 72 49-148 5-80 (100)
105 KOG0020|consensus 82.6 2.2 4.7E-05 49.5 5.8 163 53-231 99-279 (785)
106 COG2972 Predicted signal trans 78.0 2.3 5E-05 49.6 4.3 47 50-96 351-402 (456)
107 KOG0019|consensus 70.1 6.9 0.00015 46.8 5.5 155 53-238 61-238 (656)
108 COG3275 LytS Putative regulato 69.4 7.8 0.00017 45.3 5.6 46 50-95 457-507 (557)
109 COG4251 Bacteriophytochrome (l 68.9 3.1 6.7E-05 49.9 2.3 84 50-152 637-723 (750)
110 cd00823 TopoIIB_Trans TopoIIB_ 63.3 53 0.0011 33.0 9.3 79 284-376 33-116 (151)
111 COG0643 CheA Chemotaxis protei 63.0 7.4 0.00016 48.1 4.2 85 57-144 440-547 (716)
112 PF09239 Topo-VIb_trans: Topoi 57.2 61 0.0013 32.8 8.6 79 284-376 42-125 (160)
113 PRK04017 hypothetical protein; 55.2 2.3 5E-05 41.6 -1.6 29 523-551 64-92 (132)
114 COG1658 Small primase-like pro 45.7 17 0.00037 35.5 2.6 25 522-546 53-77 (127)
115 PF13662 Toprim_4: Toprim doma 44.9 5.2 0.00011 35.2 -0.9 19 524-542 46-64 (81)
116 PRK04031 DNA primase; Provisio 41.5 31 0.00066 39.8 4.3 121 388-567 122-243 (408)
117 cd01027 TOPRIM_RNase_M5_like T 39.0 3.3 7.1E-05 37.0 -3.1 27 524-550 45-71 (81)
118 cd01028 TOPRIM_TopoIA TOPRIM_T 38.4 26 0.00056 34.3 2.7 26 524-549 91-116 (142)
119 TIGR01052 top6b DNA topoisomer 37.1 2.4E+02 0.0053 33.7 10.9 86 284-384 348-440 (488)
120 PRK04184 DNA topoisomerase VI 33.4 3E+02 0.0064 33.3 10.9 98 284-396 353-460 (535)
121 PF10691 DUF2497: Protein of u 32.2 74 0.0016 28.2 4.2 31 379-412 35-65 (73)
122 PRK14867 DNA topoisomerase VI 30.0 3.4E+02 0.0073 33.7 10.8 98 284-396 498-613 (659)
123 cd03363 TOPRIM_TopoIA_TopoI TO 26.3 48 0.0011 31.9 2.3 24 525-548 74-97 (123)
124 PF14484 FISNA: Fish-specific 25.2 41 0.00088 29.7 1.5 15 450-464 29-43 (73)
125 PF00640 PID: Phosphotyrosine 23.6 1.4E+02 0.003 28.3 5.0 59 39-99 4-79 (140)
126 COG2865 Predicted transcriptio 22.4 1.3E+02 0.0028 35.6 5.3 48 50-99 271-319 (467)
127 cd03362 TOPRIM_TopoIA_TopoIII 20.3 89 0.0019 30.9 3.0 26 524-549 99-124 (151)
No 1
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.4e-226 Score=1887.71 Aligned_cols=630 Identities=59% Similarity=0.959 Sum_probs=605.3
Q ss_pred CCCCCccCceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCCeEEEEECCCCcccc
Q psy13357 16 ESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPID 95 (833)
Q Consensus 16 ~~~Y~~~~I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~DgsIsV~DnGrGIPv~ 95 (833)
.++|++++|+||+||||||||||||||||++++||||||||||||||||++||||+.|.|+||+||||||.||||||||+
T Consensus 3 ~~~Y~a~~I~vL~GLEaVRkRPGMYIGst~~~~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~d~sisV~DnGRGIPvd 82 (635)
T COG0187 3 TNNYDASSIQVLEGLEAVRKRPGMYIGSTGDGRGLHHLVWEVVDNSIDEALAGYADRIDVTLHEDGSISVEDNGRGIPVD 82 (635)
T ss_pred cCcCCHhHceeccCcHHhhcCCCceeccCCCCCcceeeEeEeeechHhHHhhCcCcEEEEEEcCCCeEEEEECCCCCccc
Confidence 46799999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccceeEEEEeCCeEEEEEEEccccccccccc
Q psy13357 96 IKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKT 175 (833)
Q Consensus 96 ~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~Gk~y~q~f~~G~~~~~~~~~ 175 (833)
+||+ +++|++|+|||+||||||||+++|++||||||||+|||||||+||+|+|+|+|+.|+|+|++|
T Consensus 83 iH~~----~~~~~vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~SVVNALS~~l~v~v~r~gk~y~q~f~~G--------- 149 (635)
T COG0187 83 IHPK----EKVSAVEVIFTVLHAGGKFDNDSYKVSGGLHGVGVSVVNALSTWLEVEVKRDGKIYRQRFERG--------- 149 (635)
T ss_pred cCCC----CCCCceEEEEEeeccCcccCCCccEeecCCCccceEEEecccceEEEEEEECCEEEEEEEeCC---------
Confidence 9998 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCceEecc--CCCCccEEEEEeCccccccccccHHHHHHHHHHhhccCCCcEEEEeecccceEE-EEEeCCCcc
Q psy13357 176 INGISVSPIKIIGD--TNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKE-IFEFKGGTS 252 (833)
Q Consensus 176 ~~~~~~~~l~~~g~--~~~~GT~V~F~PD~~iF~~~~~~~~~l~~RlrelA~LnpGl~I~l~der~~~~~-~f~~~~Gl~ 252 (833)
.++++++++|. .+++||+|+||||++||++..|++++|.+|||++|||||||+|.|+|+|....+ .|||++|+.
T Consensus 150 ---~~~~~l~~ig~~~~~~~GT~V~F~PD~~iF~~~~f~~~~l~~RlrelA~L~~gl~I~l~d~r~~~~~~~~~y~~Gl~ 226 (635)
T COG0187 150 ---VPVTPLEVIGSTDTKKTGTKVRFKPDPEIFGETEFDYEILKRRLRELAFLNKGVKITLTDERTGEEKKEFHYEGGLK 226 (635)
T ss_pred ---CcCCCceecccCCCCCCccEEEEEcChHhcCCcccCHHHHHHHHHHHhccCCCCEEEEEeccCCcccceeecccHHH
Confidence 78888888885 457899999999999999999999999999999999999999999999975322 599999999
Q ss_pred hhhhhhhcCCCccCCceEEEeeccccccCCceEEEEeeeecCCCcceeEEeecceeccCCcchHHHHHHHHHHHHHHHHH
Q psy13357 253 GFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIE 332 (833)
Q Consensus 253 ~fv~~l~~~k~~l~~~~i~~~~e~~~~~~~~i~veval~~~d~~~e~i~SFVN~I~T~~GGTHv~gf~~altr~in~y~~ 332 (833)
+|+++++.++.++|+.++++.++. .++.||||+||+++|+++++||||||+|++||||++||++||+|+||+|++
T Consensus 227 ~yv~~l~~~k~~l~~~~~~~~~~~-----~~~~vEvA~q~~d~~~e~~~SFvNnI~T~eGGTH~~Gfr~altr~in~y~~ 301 (635)
T COG0187 227 DYVEYLNKGKTPLHEEIFYFNGEK-----DGIAVEVALQWNDGYSENILSFVNNIPTREGGTHEAGFRSALTRAINEYAK 301 (635)
T ss_pred HHHHHHhcCCCccccCceecccCc-----cceEEEEEEEEecCCceEEEEeecCccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999899987776 789999999999999999999999999999999999999999999999999
Q ss_pred HcccccccCCCCCHHHHhhcceeEEEEeecCCCCCccccccccccccchhhHHHHHHHHHHHHHhCchhhHHHHHHHHHH
Q psy13357 333 ENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEA 412 (833)
Q Consensus 333 ~~~l~Kk~k~~l~~~DIregL~avIsvki~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~ak~Ii~ki~~~ 412 (833)
+.+++|+.+ ++++||||||+|||||+||||||+||||+||+|++++++|++++.+.|..||++||..|+.|+++++.+
T Consensus 302 ~~~~~k~~~--l~g~Diregl~aviSvki~~PqFegQTK~KL~n~e~~~~V~~~v~~~~~~~l~enp~~a~~i~~k~i~a 379 (635)
T COG0187 302 KKNLLKEGD--LTGDDIREGLTAVISVKIPDPQFEGQTKEKLGNSEVRSIVEKLVSEAFSLFLEENPQEAKKIVEKAIAA 379 (635)
T ss_pred HhCcCcccC--CCHHHHhhccEEEEEEECCCCCcCcccccccccHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 999988765 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHhhhcccccccccccccccccCCCCCCceEEEEeecCCCccccccccCCcceeecccCcccccccccch
Q psy13357 413 ARSREAARKTRELTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARF 492 (833)
Q Consensus 413 a~ar~aa~kar~~~r~k~~~~~~~lpgKL~dc~~kd~~~~eLflvEGDSAgGsak~gRdr~~qailPLrGKiLNv~ka~~ 492 (833)
|+||+|||+||+++|||++++...||||||||+++||++|||||||||||||||||||||+|||||||||||||||||+.
T Consensus 380 a~aR~aarkare~~R~k~~~~~~~LpGKLadC~skd~~~~ELfiVEGDSAGGSAKqgRdR~~QAILPLRGKiLNVeka~~ 459 (635)
T COG0187 380 AKAREAARKARELTRRKSALDIPGLPGKLADCTSKDPEKSELFLVEGDSAGGSAKQGRDREFQAILPLRGKILNVEKARL 459 (635)
T ss_pred HHHHHHHHHHHHHHhhhcccccCCCCCcCcccccCCcccceEEEEecCCcchhhhhccCccceEEecccCcchhhhhccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccHhHHHHHHHhCCCCCCCCCCcCCCCCCceeeccCCCCCchhHHHHHHHHHHHhcHhhhhcCcEEEEcCcEEEEE
Q psy13357 493 EKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIK 572 (833)
Q Consensus 493 ~ki~~N~Ei~~li~alG~g~~~~~~~~~~LRY~kIiImTDADvDGsHI~~Llltff~r~~p~Li~~G~vyia~pPLykv~ 572 (833)
+||++|+||++|++|||||+++ +||+++||||||||||||||||+|||||||||||||||+||++|||||||||||||+
T Consensus 460 ~kil~N~EI~~ii~AlG~g~~~-~fd~~~LRY~kIiIMTDADvDGaHIrtLLlTfFyr~m~~LIe~G~vyiA~PPLYkv~ 538 (635)
T COG0187 460 DKILKNEEIQTIITALGTGIGK-DFDLEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYMPPLIENGHVYIAQPPLYKVK 538 (635)
T ss_pred hhhhhhHHHHHHHHHhCCCCCC-CCChhhCccCcEEEEecCCCChHHHHHHHHHHHHHHhHHHHHcCcEEEEcCceEEEE
Confidence 9999999999999999999995 599999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcceeecCHHHHHHHHHHhhcccceEeecCCCCccChHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHhcccCCCC
Q psy13357 573 YGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLD 652 (833)
Q Consensus 573 ~gk~~~y~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 652 (833)
+||++.|+|||.|+++.+.+
T Consensus 539 ~~k~~~Y~~~d~E~~~~~~~------------------------------------------------------------ 558 (635)
T COG0187 539 KGKKTFYAYDDEELEKLLER------------------------------------------------------------ 558 (635)
T ss_pred cCCceeEeCCHHHHHHHHHH------------------------------------------------------------
Confidence 99999999999997765431
Q ss_pred ChHHHHHHHHHHHHHhccCCeEEEEEeecccceEEEEEEEeeCceeeEEecccccCCHHHHHHHHHHHHHHhhhcCCeEE
Q psy13357 653 TRENAEQFAKKIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVII 732 (833)
Q Consensus 653 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (833)
+
T Consensus 559 ---------------~---------------------------------------------------------------- 559 (635)
T COG0187 559 ---------------L---------------------------------------------------------------- 559 (635)
T ss_pred ---------------h----------------------------------------------------------------
Confidence 0
Q ss_pred EcccccccceeeecCHHHHHHHHHHhccCCccceeeccCCCCCccchhhhccCcCceeEEeeeeccHHHHHHHHHHhcCC
Q psy13357 733 QKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGD 812 (833)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iqRyKGLGEMn~~qLweTtm~P~~R~l~~v~i~da~~a~~~f~~LMG~ 812 (833)
. + . ++++||||||||||||+|||||||||++|+|+||+|+||++||++|++||||
T Consensus 560 -----~--~-----------------~-~~~~IqRyKGLGEMnp~QLwETTmdP~~R~L~~V~i~da~~ad~~f~~LMGd 614 (635)
T COG0187 560 -----G--K-----------------K-KGYEIQRYKGLGEMNPDQLWETTMDPETRRLLQVTIEDADEADEIFSTLMGD 614 (635)
T ss_pred -----c--c-----------------c-CCceeEeecccCCCCHHHHHHhccCccceeEEEEEcccHHHHHHHHHHHcCC
Confidence 0 0 1 4689999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhhhccccCCC
Q psy13357 813 NVELRRKFIELNALHAKNIDI 833 (833)
Q Consensus 813 ~v~~Rr~fI~~~a~~~~~ldi 833 (833)
+|+|||+||++||+++.++||
T Consensus 615 ~ve~Rr~fIe~na~~~~~~di 635 (635)
T COG0187 615 KVEPRRNFIEENALFVENLDI 635 (635)
T ss_pred CchHHHHHHHHHhhhhhhccC
Confidence 999999999999999999997
No 2
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=100.00 E-value=9.2e-210 Score=1829.20 Aligned_cols=753 Identities=56% Similarity=0.939 Sum_probs=704.1
Q ss_pred CCCCCccCceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCCeEEEEECCCCcccc
Q psy13357 16 ESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPID 95 (833)
Q Consensus 16 ~~~Y~~~~I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~DgsIsV~DnGrGIPv~ 95 (833)
.++|+|++|++|+||||||||||||||||+.++||||+|||||||||||++||||+.|.|+|+.||+|+|+|||||||++
T Consensus 4 ~~~Y~a~~i~vL~gle~VRkRPgMYIGst~~~~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~dgsIsV~DnGrGIPvd 83 (756)
T PRK14939 4 SNSYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVYEVVDNAIDEALAGHCDDITVTIHADGSVSVSDNGRGIPTD 83 (756)
T ss_pred cCCCCHHHCeEecccHHHhcCCCCeeCCCCCCcchhhhhhHhhcccccccccCCCCEEEEEEcCCCeEEEEEcCCcccCC
Confidence 35699999999999999999999999999987899999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccceeEEEEeCCeEEEEEEEccccccccccc
Q psy13357 96 IKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKT 175 (833)
Q Consensus 96 ~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~Gk~y~q~f~~G~~~~~~~~~ 175 (833)
+||+ +|+|++|++||+|||||||+++.|++||||||||+|||||||+||+|+|+|+|+.|+|+|++|
T Consensus 84 ~h~~----~g~~~~Elvlt~lhAggKfd~~~ykvSgGlhGvG~svvNAlS~~l~v~v~r~gk~~~q~f~~G--------- 150 (756)
T PRK14939 84 IHPE----EGVSAAEVIMTVLHAGGKFDQNSYKVSGGLHGVGVSVVNALSEWLELTIRRDGKIHEQEFEHG--------- 150 (756)
T ss_pred cccc----cCCchhhheeeeecccCCCCCCcccccCCccCccceEeehccCeEEEEEEeCCeEEEEEEecC---------
Confidence 9998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCceEeccCCCCccEEEEEeCccccccccccHHHHHHHHHHhhccCCCcEEEEeecccceEEEEEeCCCcchhh
Q psy13357 176 INGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFV 255 (833)
Q Consensus 176 ~~~~~~~~l~~~g~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~RlrelA~LnpGl~I~l~der~~~~~~f~~~~Gl~~fv 255 (833)
.+++|++.++.+.++||+|+|+||+++|++..|+++.|.+|++++|||||||+|+|+|+|.++++.|+|++|+.+|+
T Consensus 151 ---~~~~~l~~~g~~~~~GT~V~F~PD~~iF~~~~~~~~~i~~rl~elA~lnpgl~i~l~der~~~~~~f~~egGi~~fv 227 (756)
T PRK14939 151 ---VPVAPLKVVGETDKTGTEVRFWPSPEIFENTEFDYDILAKRLRELAFLNSGVRIRLKDERDGKEEEFHYEGGIKAFV 227 (756)
T ss_pred ---ccccCccccCCcCCCCcEEEEEECHHHcCCcccCHHHHHHHHHHHhhcCCCCEEEEeccCCCceeEEEeCChHHHHH
Confidence 77788888887788999999999999998889999999999999999999999999999987677899999999999
Q ss_pred hhhhcCCCccCCceEEEeeccccccCCceEEEEeeeecCCCcceeEEeecceeccCCcchHHHHHHHHHHHHHHHHHHcc
Q psy13357 256 SYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENE 335 (833)
Q Consensus 256 ~~l~~~k~~l~~~~i~~~~e~~~~~~~~i~veval~~~d~~~e~i~SFVN~I~T~~GGTHv~gf~~altr~in~y~~~~~ 335 (833)
+|++.++.++|++++++.++. +++.||||+||+++|+++++||||||+|++||||++||++||+++||+|+++++
T Consensus 228 ~~l~~~~~~~~~~~i~~~~~~-----~~~~veval~~~~~~~e~~~SFvN~I~T~~GGTHv~gf~~altr~in~y~~~~~ 302 (756)
T PRK14939 228 EYLNRNKTPLHPNIFYFSGEK-----DGIGVEVALQWNDSYQENVLCFTNNIPQRDGGTHLAGFRAALTRTINNYIEKEG 302 (756)
T ss_pred HHHhcCCCcCCCCceEEEeee-----CCeEEEEEEEEcCCCceeEEEEECcccCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 999988888888889998876 789999999999999999999999999999999999999999999999999989
Q ss_pred cccccCCCCCHHHHhhcceeEEEEeecCCCCCccccccccccccchhhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH
Q psy13357 336 FLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARS 415 (833)
Q Consensus 336 l~Kk~k~~l~~~DIregL~avIsvki~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~ak~Ii~ki~~~a~a 415 (833)
++|+.+.+++++||||||++||||++|||+|+||||+||+|++++++|++++.+.|..||++||..|+.|+++++.+|+|
T Consensus 303 l~K~~~~~l~~~diregl~~vvsvki~~P~FegQTK~kL~n~ev~~~v~~~v~e~l~~~l~~np~~a~~ii~k~~~aa~a 382 (756)
T PRK14939 303 LAKKAKVSLTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPAVESLVNEKLSEFLEENPNEAKIIVGKIIDAARA 382 (756)
T ss_pred cccccCCCCCHhHHhhceEEEEEEecCCCcccCchhccccCHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 98887789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHhhhcccccccccccccccccCCCCCCceEEEEeecCCCccccccccCCcceeecccCcccccccccchhHh
Q psy13357 416 REAARKTRELTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKI 495 (833)
Q Consensus 416 r~aa~kar~~~r~k~~~~~~~lpgKL~dc~~kd~~~~eLflvEGDSAgGsak~gRdr~~qailPLrGKiLNv~ka~~~ki 495 (833)
|+||++||+++|||++++..+|||||+||+++||++|||||||||||||||||||||+||||||||||||||||++.+||
T Consensus 383 R~aa~kar~~~rrK~~~~~~~lpgKL~Dc~~~d~~~~eLfivEGDSAgGsAk~gRdr~~qailPLRGKiLNveka~~~ki 462 (756)
T PRK14939 383 REAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKM 462 (756)
T ss_pred HHHHHHHHHHhccccccccCCCCCCccccccCCCCceEEEEEeCCCCccccccccCccceeccccCCccchhccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccHhHHHHHHHhCCCCCCCCCCcCCCCCCceeeccCCCCCchhHHHHHHHHHHHhcHhhhhcCcEEEEcCcEEEEEeCC
Q psy13357 496 ILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGN 575 (833)
Q Consensus 496 ~~N~Ei~~li~alG~g~~~~~~~~~~LRY~kIiImTDADvDGsHI~~Llltff~r~~p~Li~~G~vyia~pPLykv~~gk 575 (833)
++|+||++||+|||||+|+++||+++||||||||||||||||+|||||||||||||||+||++||||+||||||||++||
T Consensus 463 l~N~Ei~~li~alG~gig~~~fd~~~LRY~kIiIMTDADvDGsHIrtLLltff~r~~p~Lie~G~vyia~pPLykv~~gk 542 (756)
T PRK14939 463 LSSQEIGTLITALGCGIGRDEFNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHLYIAQPPLYKVKKGK 542 (756)
T ss_pred hcCHHHHHHHHHhCCCCCcccCChhhCCcCeEEEEcCCCCCchHHHHHHHHHHHHhChhhccCCeEEEecCcEEEEecCC
Confidence 99999999999999999966899999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeecCHHHHHHHHHHhhcccceEeecCCCCccChHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHhcccCCCCChH
Q psy13357 576 NECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRE 655 (833)
Q Consensus 576 ~~~y~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 655 (833)
++.|||||+|+++|+.+.+.++..+... ++..+.++.|.++......++..++...+++.+..++.+.....+.
T Consensus 543 ~~~y~~~~~e~~~~l~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~----- 616 (756)
T PRK14939 543 QEQYLKDDEALDDYLIELALEGATLHLA-DGPAISGEALEKLVKEYRAVRKIIDRLERRYPRAVLEALIYAPALD----- 616 (756)
T ss_pred eeEecCCHHHHHHHHHHhCcCCceeecC-CCCcccHHHHHHHHHHHHHHHHHHhHHhccccHHHHHHHHhccccc-----
Confidence 9999999999999999888888877654 4566999999999999999999999999998876665554211110
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeecccceEEEEEEEeeCceeeEEecccccCCHHHHHHHHHHHHHHhhhcCCeEEEcc
Q psy13357 656 NAEQFAKKIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVIIQKS 735 (833)
Q Consensus 656 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (833)
..+ +. + . .....+|.+|+.|++|+++.+..+.+.++++.++.+..+
T Consensus 617 ----------~~~--------~~-~--~-------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (756)
T PRK14939 617 ----------LDD--------LA-D--E-------------AAVAALDADFLTSAEYRRLVELAEKLRGLIEEGAYLERG 662 (756)
T ss_pred ----------hhh--------hc-c--h-------------hhhhhcchhhhcCHHHHHHHHHHHHHHHHhccCcEEEcC
Confidence 000 00 0 0 001236789999999999999999999987666777665
Q ss_pred cccccceeeecCHHHHHHHHHHhccCCccceeeccCCCCCccchhhhccCcCceeEEeeeeccHHHHHHHHHHhcCCCch
Q psy13357 736 IGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVE 815 (833)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iqRyKGLGEMn~~qLweTtm~P~~R~l~~v~i~da~~a~~~f~~LMG~~v~ 815 (833)
+ ++..+.++.+++++|++.|+++..||||||||||||+|||||||||++|+|+||+++|+..|+++|+.|||+.|+
T Consensus 663 --~--~~~~~~~~~ell~~v~~~gr~g~~Iqr~KgLgEM~~eqL~eTtmdp~~R~l~~v~led~~~a~~~f~~lMg~~ve 738 (756)
T PRK14939 663 --E--RKQPVSSFEEALDWLLAEARKGLSIQRYKGLGEMNPEQLWETTMDPENRRLLQVTIEDAIAADEIFTTLMGDEVE 738 (756)
T ss_pred --C--cceecCCHHHHHHHHHhhhccCccccccccHHHhHHHHHHHHhhChhheeeeeeehhhHHHHHHHHHHHhcCCcc
Confidence 3 456799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccccCCC
Q psy13357 816 LRRKFIELNALHAKNIDI 833 (833)
Q Consensus 816 ~Rr~fI~~~a~~~~~ldi 833 (833)
|||+||+.||..+.+||+
T Consensus 739 ~rr~fI~~~a~~v~~LD~ 756 (756)
T PRK14939 739 PRREFIEENALNVANLDV 756 (756)
T ss_pred hhHHHHHHhhhhHhhcCC
Confidence 999999999998888986
No 3
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=100.00 E-value=1.6e-204 Score=1777.30 Aligned_cols=688 Identities=40% Similarity=0.662 Sum_probs=595.2
Q ss_pred CCCCccCceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCCeEEEEECCCCccccc
Q psy13357 17 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDI 96 (833)
Q Consensus 17 ~~Y~~~~I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~DgsIsV~DnGrGIPv~~ 96 (833)
++|+|++|++|+||||||||||||||||+. +||||||||||||||||+++|+|+.|.|+||+||||+|+||||||||++
T Consensus 98 ~~Y~a~~I~vLeGLEaVRkRPGMYIGst~~-~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~DgsItV~DnGRGIPvd~ 176 (903)
T PTZ00109 98 SEYDADDIVVLEGLEAVRKRPGMYIGNTDE-KGLHQLLFEILDNSVDEYLAGECNKITVVLHKDGSVEISDNGRGIPCDV 176 (903)
T ss_pred CCCChHhCeehhccHHHhcCCCceeCCCCC-CcceEEEEEEeeccchhhccCCCcEEEEEEcCCCeEEEEeCCccccccc
Confidence 459999999999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcceeeeeeeccccCCCCCC----------------------------------------cceecCCcccc
Q psy13357 97 KIDDKHKPKRSAAEIVMTELHAGGKFNKN----------------------------------------SYKISGGLHGI 136 (833)
Q Consensus 97 h~~~~~~~~~~~~E~Vft~LhAGgKFdd~----------------------------------------~ykvSgGlhGv 136 (833)
||+ +|+|++|+|||+|||||||+++ .|++|||||||
T Consensus 177 h~k----~g~s~~E~VlT~LhAGGKF~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGV 252 (903)
T PTZ00109 177 SEK----TGKSGLETVLTVLHSGGKFQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGV 252 (903)
T ss_pred ccc----CCCcceeEEEEEeccCccccCcccccccccccccccccccccccccccccccccccccccCCcceecCcCCCc
Confidence 998 9999999999999999999883 79999999999
Q ss_pred cchhhhhcccceeEEEEeCCeEEEEEEEcccccccccccccccccCCceEeccC-CCCccEEEEEeC-cccccc-cc---
Q psy13357 137 GLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDT-NKQGTKIHFWVD-EKIFSN-IE--- 210 (833)
Q Consensus 137 G~svvNAlS~~~~Vev~r~Gk~y~q~f~~G~~~~~~~~~~~~~~~~~l~~~g~~-~~~GT~V~F~PD-~~iF~~-~~--- 210 (833)
|+|||||||+||+|+|+|+|+.|+|+|++| .++.|+++++.+ .++||+|+|||| ++||++ ..
T Consensus 253 G~SVVNALS~~l~VeV~RdGK~y~q~F~rG------------~~v~pLkvig~~~~~tGT~VtF~PD~~~IF~~~~~~~~ 320 (903)
T PTZ00109 253 GLSVVNALSSFLKVDVFKGGKIYSIELSKG------------KVTKPLSVFSCPLKKRGTTIHFLPDYKHIFKTHHQHTE 320 (903)
T ss_pred ceeeeeeccCeEEEEEEECCEEEEEEeCCC------------cccCCccccCCcCCCCceEEEEEeCcchhcCccccccc
Confidence 999999999999999999999999999999 778898888877 789999999999 999975 33
Q ss_pred ----------ccHHHHHHHHHHhhccCCCcEEEEeecccc------eEEEEEeCCCcchhhhhhhcCCCccCCc--eEEE
Q psy13357 211 ----------FHYEILKKRIRELSFLNNGVCITLIDERIK------KKEIFEFKGGTSGFVSYINKSKLVVHPT--IFQA 272 (833)
Q Consensus 211 ----------~~~~~l~~RlrelA~LnpGl~I~l~der~~------~~~~f~~~~Gl~~fv~~l~~~k~~l~~~--~i~~ 272 (833)
|++++|.+||+++|||||||+|+|+|+|.+ ..+.|+|++|+.+||++++.++.++|++ ++++
T Consensus 321 ~~~~~~~~~~F~~d~L~~RLrElAfLNpGL~I~L~DeR~~~~~~~~~~e~f~~egGi~dfv~~ln~~k~~l~~~~~~I~~ 400 (903)
T PTZ00109 321 TEEEEGCKNGFNLDLIKNRIHELSYLNPGLTFYLVDERIANENNFYPYETIKHEGGTREFLEELIKDKTPLYKDINIISI 400 (903)
T ss_pred cccccccccccCHHHHHHHHHHHhccCCCcEEEEEecCccccCCcceEEEEEecCCHHHHHHHhcCCCCccCCCCceEEE
Confidence 899999999999999999999999999853 2467999999999999999888888765 7888
Q ss_pred eeccccccCCceEEEEeeeec-CCCcceeEEeecceeccCCcchHHHHHHHHHHHHHHHHHHcccccccCCCCCHHHHhh
Q psy13357 273 IGNKISEKKNNINIDVSMQWN-NSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIRE 351 (833)
Q Consensus 273 ~~e~~~~~~~~i~veval~~~-d~~~e~i~SFVN~I~T~~GGTHv~gf~~altr~in~y~~~~~l~Kk~k~~l~~~DIre 351 (833)
.++. +++.||||+||+ ++|+++++||||+|+|+ ||||++||++||+++||.|+++.+++|+++.+++++||||
T Consensus 401 ~g~~-----~~i~VEVAlq~s~~~y~e~i~SFVNnI~T~-GGTHv~Gfr~ALTr~In~y~kk~~llK~k~~~i~gedIRE 474 (903)
T PTZ00109 401 RGVI-----KNVNVEVSLSWSLESYTALIKSFANNVSTT-AGTHIDGFKYAITRCVNGNIKKNGYFKGNFVNIPGEFIRE 474 (903)
T ss_pred Eeee-----cCeEEEEEEEecCCCCceEEEEEECCccCC-CCCHHHHHHHHHHHHHHHHHHHhCcccccCCCCCHHHHhh
Confidence 8765 678999999998 58999999999999999 9999999999999999999999998886668999999999
Q ss_pred cceeEEEEeecCCCCCccccccccccccchhhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHhHHhhhcccc
Q psy13357 352 GLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNL 431 (833)
Q Consensus 352 gL~avIsvki~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~ak~Ii~ki~~~a~ar~aa~kar~~~r~k~~ 431 (833)
||++||||++++|+|+||||+||+|++++++|+++|.+.|..||++||..|+.|++|++.+++||++||+||+++|+|++
T Consensus 475 GLtavISvki~~PqFeGQTK~KLgn~~vk~~ve~iv~e~L~~~l~~np~~a~~I~~Ka~~a~~AreaAk~arel~R~K~~ 554 (903)
T PTZ00109 475 GMTAIISVKLNGAEFDGQTKTKLGNHLLKTILESIVFEQLSEILEFEPNLLLAIYNKSLAAKKAFEEAKAAKDLIRQKNN 554 (903)
T ss_pred ccEEEEEEeccCCcccCcccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred cc-cccccccccccCCCCCCceEEEEeecCCCccccccccCCcceeecccCcccccccccc-hhHhhccHhHHHHHHHhC
Q psy13357 432 ID-DIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKAR-FEKIILSEQITTLISTLG 509 (833)
Q Consensus 432 ~~-~~~lpgKL~dc~~kd~~~~eLflvEGDSAgGsak~gRdr~~qailPLrGKiLNv~ka~-~~ki~~N~Ei~~li~alG 509 (833)
.. ...|||||+||+++||++|||||||||||||||||||||+||||||||||||||||++ .+||++|+||++||+|||
T Consensus 555 ~~~~~~lPgKL~DC~s~d~~~~ELfIVEGDSAgGSAKqgRdR~~QAILPLRGKILNVeka~~~~kil~N~EI~~Li~alG 634 (903)
T PTZ00109 555 QYYSTILPGKLVDCISDDIERNELFIVEGESAAGNAKQARNREFQAVLPLKGKILNIEKIKNNKKVFENSEIKLLITSIG 634 (903)
T ss_pred ccccCCCCCcccccccCCCcccEEEEEcccCCCcccccccCccceeecccCCceehhcccccHHHHHhcHHHHHHHHHhC
Confidence 64 4679999999999999999999999999999999999999999999999999999995 999999999999999999
Q ss_pred CCCCCC---CCCc----------------------------CCCCCCceeeccCCCCCchhHHHHHHHHHHHhcHhhhhc
Q psy13357 510 IGIEQD---EFNL----------------------------EKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEY 558 (833)
Q Consensus 510 ~g~~~~---~~~~----------------------------~~LRY~kIiImTDADvDGsHI~~Llltff~r~~p~Li~~ 558 (833)
||++.. +||+ ++||||||||||||||||+|||||||||||||||+||++
T Consensus 635 ~gig~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LRYgKIIIMTDADVDGsHIrtLLLTff~r~~p~Lie~ 714 (903)
T PTZ00109 635 LSVNPVTWRQYDLSHGTKASKDESVQNNNSTLTKKKNSLFDTPLRYGKIILLTDADVDGEHLRILLLTLLYRFCPSLYEH 714 (903)
T ss_pred CCCCcccccccCcccccccccccccccccccccccccccccccCCcCeEEEEeCCCCChhHHHHHHHHHHHHhCHHhhhC
Confidence 999852 6888 999999999999999999999999999999999999999
Q ss_pred CcEEEEcCcEEEEEeC------------CcceeecCHHHHHHHHHHhhcccc------eEeecCCCCccChHHHHHHHHH
Q psy13357 559 GYIYIAQPPLYKIKYG------------NNECYLRDDIEEERYMLKIAFKNV------KLISIENGDIIKENYFFKLIDK 620 (833)
Q Consensus 559 G~vyia~pPLykv~~g------------k~~~y~~~~~e~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 620 (833)
||||+|+||||||++| |+..|+|||+|+++++.+.+.+.. .+...+....+..+..
T Consensus 715 G~vyia~pPLyki~~~~~~~~~~~~~~~k~~~y~~sd~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 788 (903)
T PTZ00109 715 GRVYVACPPLYRITNNRMKQFNVSTKNSKKYIYTWSDEELNVLIKLLNKDYSSKETTRSVEEKGNAPDLDNEYE------ 788 (903)
T ss_pred CEEEEecCCEEEEEecCcccccccccccceeEEeCCHHHHHHHHHHhhcccccccccccccccccccccccccc------
Confidence 9999999999999985 778899999999999975422110 0000000000000000
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHhcccCCCCChHHHHHHHHHHHHHhccCCeEEEEEeecccceEEEEEEEeeCceeeE
Q psy13357 621 YNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNY 700 (833)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 700 (833)
...+...- +..+ +.+. ++..++.. ..+.
T Consensus 789 -------~~~~~~~~--------~~~~-----~~~~--------------------~~~~~~~~---~~~~--------- 816 (903)
T PTZ00109 789 -------DEKLDNKN--------MREN-----NVDE--------------------VELKTELG---TNVA--------- 816 (903)
T ss_pred -------cccccccc--------cccc-----cccc--------------------cccccccc---cccc---------
Confidence 01111100 0000 0000 00000000 0000
Q ss_pred EecccccCCHHHHHHHHHHHHHHhhhcCCeEEEcccccccceeeecCHHHHHHHHHHhccCCccceeeccCCCCCccchh
Q psy13357 701 IIDINFINNKDYKKLVSIISTFKKIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLW 780 (833)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iqRyKGLGEMn~~qLw 780 (833)
.. + . ..++. +-..+.. ..++++||||||||||||+|||
T Consensus 817 ---------------------------------~~--~--~---~~~~~-~~~~~~~-~~~~~~iqRfKGLGEM~~~qLw 854 (903)
T PTZ00109 817 ---------------------------------DT--E--Q---TDELD-INKAFFK-FSKHYEIQRFKGLGEMMADQLW 854 (903)
T ss_pred ---------------------------------cc--c--c---ccccc-ccccccc-cCCcccceeeccHhhhhHHHHH
Confidence 00 0 0 00000 0000000 1235899999999999999999
Q ss_pred hhccCcCceeEEeeeeccHHHHHHHHHHhcCCCchHHHHHHHHhhhc
Q psy13357 781 ETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALH 827 (833)
Q Consensus 781 eTtm~P~~R~l~~v~i~da~~a~~~f~~LMG~~v~~Rr~fI~~~a~~ 827 (833)
||||||++|+|+||+|+||.+|+++|++|||++|+|||+||++||..
T Consensus 855 eTTMdP~~R~L~rv~v~d~~~a~~~~~~LMG~~~~~Rk~fI~~n~~~ 901 (903)
T PTZ00109 855 ETTMDPKKRILIRITVSDAMRASELIFLLMGEDVQSRKQFIFENSPA 901 (903)
T ss_pred HhhhChhhceeeeeeHHHHHHHHHHHHHHhCCCChhhHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999853
No 4
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=100.00 E-value=4.1e-200 Score=1734.80 Aligned_cols=622 Identities=49% Similarity=0.790 Sum_probs=591.8
Q ss_pred CCCCccCceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCCeEEEEECCCCccccc
Q psy13357 17 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDI 96 (833)
Q Consensus 17 ~~Y~~~~I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~DgsIsV~DnGrGIPv~~ 96 (833)
.+|++++|++|+|+||||||||||||||+. +||||||||||||||||+++|+|+.|.|+|++||+|+|+|||||||+++
T Consensus 3 ~~Y~~~~i~~L~glE~VRkRPgMYIGst~~-~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~~dgsitV~DnGrGIPv~~ 81 (637)
T TIGR01058 3 SKYNADAIKILEGLDAVRKRPGMYIGSTDS-KGLHHLVWEIVDNSVDEVLAGYADNITVTLHKDNSITVQDDGRGIPTGI 81 (637)
T ss_pred CccCHHHCeeecccHHHhcCCCCeECCCCc-chhheehhhhhcchhhhhhcCCCcEEEEEEcCCCeEEEEECCCcccCcc
Confidence 359999999999999999999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccceeEEEEeCCeEEEEEEEcccccccccccc
Q psy13357 97 KIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTI 176 (833)
Q Consensus 97 h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~Gk~y~q~f~~G~~~~~~~~~~ 176 (833)
||+ +++|++|+|||+||||||||+++|++||||||||+|||||||+||+|+|+|+|+.|+|+|++|+
T Consensus 82 h~~----~~~~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~svvNAlS~~~~V~v~r~gk~~~q~f~~Gg--------- 148 (637)
T TIGR01058 82 HQD----GNISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGASVVNALSSWLEVTVKRDGQIYQQRFENGG--------- 148 (637)
T ss_pred cCc----CCCccceeEEEEecccCcCCCCcccccCCcccccccccceeeceEEEEEEECCEEEEEEEecCC---------
Confidence 998 8999999999999999999999999999999999999999999999999999999999999974
Q ss_pred cccccCCceEeccCCCCccEEEEEeCccccccccccHHHHHHHHHHhhccCCCcEEEEeecccceEEEEEeCCCcchhhh
Q psy13357 177 NGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFVS 256 (833)
Q Consensus 177 ~~~~~~~l~~~g~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~RlrelA~LnpGl~I~l~der~~~~~~f~~~~Gl~~fv~ 256 (833)
.+++++++++.+.++||+|+||||++||++..|++++|.+||+++|||||||+|+|+|++.+.++.|+|++|+.+|++
T Consensus 149 --~~~~~l~~~~~~~~~GT~V~F~PD~~iF~~~~f~~d~l~~RlrelA~Ln~GL~I~l~der~~~~~~f~~~~Gl~~yv~ 226 (637)
T TIGR01058 149 --KIVQSLKKIGTTKKTGTLVHFHPDPTIFKTTQFNSNIIKERLKESAFLLKKLKLTFTDKRTNKTTVFFYENGLVDFVD 226 (637)
T ss_pred --cCcCCcccccCCCCCceEEEEEeCHHHcCCCccCHHHHHHHHHHHhccCCCcEEEEEecCCCceEEEEcCcCHHHHHH
Confidence 778888888877889999999999999998899999999999999999999999999999766667999999999999
Q ss_pred hhhcCCCccCCceEEEeeccccccCCceEEEEeeeecCCCcceeEEeecceeccCCcchHHHHHHHHHHHHHHHHHHccc
Q psy13357 257 YINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEF 336 (833)
Q Consensus 257 ~l~~~k~~l~~~~i~~~~e~~~~~~~~i~veval~~~d~~~e~i~SFVN~I~T~~GGTHv~gf~~altr~in~y~~~~~l 336 (833)
+++.++.+++ ++++++++. +++.||||++|+++|+++++||||+|+|++||||++||++||+++||+|+++.++
T Consensus 227 ~l~~~k~~l~-~~i~~~~~~-----~~~~vevAl~~~~~~~e~~~SFvN~I~T~~GGTHv~g~~~aLtr~in~~~~~~~~ 300 (637)
T TIGR01058 227 YINETKETLS-QVTYFEGEK-----NGIEVEVAFQFNDGDSENILSFANSVKTKEGGTHENGFKLAITDVINSYARKYNL 300 (637)
T ss_pred HhcCCCCcCC-ccEEEEEEE-----CCcEEEEEEEEcCCCCeEEEEeECCccCCCCCcHHHHHHHHHHHHHHHHHHHhch
Confidence 9998777775 588888765 6789999999999999999999999999999999999999999999999999888
Q ss_pred ccccCCCCCHHHHhhcceeEEEEeecCC--CCCccccccccccccchhhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Q psy13357 337 LKKSKIEIIGEDIREGLTCVLSIKIPDP--KFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAAR 414 (833)
Q Consensus 337 ~Kk~k~~l~~~DIregL~avIsvki~nP--~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~ak~Ii~ki~~~a~ 414 (833)
+|+++.+++++|||+||++||||++++| +|+||||+||+|++++.+|++++.+.|..||++||..|+.|+++++.+|+
T Consensus 301 lK~~~~~i~~~diregL~~vIsvki~~pnP~FegQTK~kL~n~~v~~~v~~~v~e~l~~~l~~np~~a~~Iiek~~~~a~ 380 (637)
T TIGR01058 301 LKEKDKNLEGSDIREGLSAIISVRIPEELIQFEGQTKSKLFSPEARNVVDEIVQDHLFFFLEENNNDAKLLIDKAIKARD 380 (637)
T ss_pred hccccccCChhhHhhccEEEEEEecCCCcccccCcccccccChhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 8876679999999999999999999755 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHhhhc--ccccccccccccccccCCCCCCceEEEEeecCCCccccccccCCcceeecccCcccccccccch
Q psy13357 415 SREAARKTRELTRK--KNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARF 492 (833)
Q Consensus 415 ar~aa~kar~~~r~--k~~~~~~~lpgKL~dc~~kd~~~~eLflvEGDSAgGsak~gRdr~~qailPLrGKiLNv~ka~~ 492 (833)
||+||++||++.|+ |+++....|||||+||++++|++|||||||||||||||||||||+|||||||||||||||+++.
T Consensus 381 aR~aa~~ar~~~r~~~k~~~~~~~lpgKL~dc~~~~~~~~eLfivEGDSAggsak~gRdr~~qailPLRGKiLNv~ka~~ 460 (637)
T TIGR01058 381 AKEAAKKAREEKKSGKKPKKEKGILSGKLTPAQSKNPAKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKAKL 460 (637)
T ss_pred HHHHHHHHHHHHhhccccccccCCCCcccccccCCCCCccEEEEEecCccccccccccccceEEEeccCCcccccccCCH
Confidence 99999999999987 3466667899999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccHhHHHHHHHhCCCCCCCCCCcCCCCCCceeeccCCCCCchhHHHHHHHHHHHhcHhhhhcCcEEEEcCcEEEEE
Q psy13357 493 EKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIK 572 (833)
Q Consensus 493 ~ki~~N~Ei~~li~alG~g~~~~~~~~~~LRY~kIiImTDADvDGsHI~~Llltff~r~~p~Li~~G~vyia~pPLykv~ 572 (833)
+||++|+||++|++|||||+| ++||+++||||||||||||||||+|||||||||||||||+||++||||+|+||||||+
T Consensus 461 ~ki~~N~Ei~~l~~alG~~~g-~~~~~~~LRY~kIiImTDADvDGsHIr~LLltff~r~~p~Li~~G~v~~~~~Pl~kv~ 539 (637)
T TIGR01058 461 ADILKNEEINTIIFCIGTGIG-ADFSIKDLKYDKIIIMTDADTDGAHIQVLLLTFFYRYMRPLIELGHVYIALPPLYKLS 539 (637)
T ss_pred HHHhcchHHHHHHHHhCCCcC-ccCCccccccceEEEEeCCCCCcchhHHHHHHHHHHhCHhhccCCeEEEecCCEEEEE
Confidence 999999999999999999998 5899999999999999999999999999999999999999999999999999999999
Q ss_pred eC--CcceeecCHHHHHHHHHHhhcccceEeecCCCCccChHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHhcccCC
Q psy13357 573 YG--NNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILN 650 (833)
Q Consensus 573 ~g--k~~~y~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 650 (833)
+| +++.|+|||+|+++|+.+
T Consensus 540 ~~~~~~~~y~~~~~e~~~~~~~---------------------------------------------------------- 561 (637)
T TIGR01058 540 KKDGKKVKYAWSDLELESVKKK---------------------------------------------------------- 561 (637)
T ss_pred eCCCceEEEeCCHHHHHHHHHh----------------------------------------------------------
Confidence 85 677899999999999631
Q ss_pred CCChHHHHHHHHHHHHHhccCCeEEEEEeecccceEEEEEEEeeCceeeEEecccccCCHHHHHHHHHHHHHHhhhcCCe
Q psy13357 651 LDTRENAEQFAKKIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGV 730 (833)
Q Consensus 651 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (833)
T Consensus 562 -------------------------------------------------------------------------------- 561 (637)
T TIGR01058 562 -------------------------------------------------------------------------------- 561 (637)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEcccccccceeeecCHHHHHHHHHHhccCCccceeeccCCCCCccchhhhccCcCceeEEeeeeccHHHHHHHHHHhc
Q psy13357 731 IIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLM 810 (833)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iqRyKGLGEMn~~qLweTtm~P~~R~l~~v~i~da~~a~~~f~~LM 810 (833)
-++++||||||||||||+|||||||||++|+|+||+++|+..|+.+|++||
T Consensus 562 -----------------------------~~~~~i~ryKGLGem~~~~l~ettm~p~~r~l~~v~~~d~~~~~~~~~~lm 612 (637)
T TIGR01058 562 -----------------------------LKNYTLQRYKGLGEMNADQLWETTMNPETRTLVRVKIDDLARAERQINTLM 612 (637)
T ss_pred -----------------------------cCCCCceEECchhhhhHHHHHHHhhCcccceeeEEehhhhhhHHHHHHHHc
Confidence 013679999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhhhcc
Q psy13357 811 GDNVELRRKFIELNALHA 828 (833)
Q Consensus 811 G~~v~~Rr~fI~~~a~~~ 828 (833)
|++|+|||+||++||..+
T Consensus 613 g~~~~~Rk~~i~~~~~~~ 630 (637)
T TIGR01058 613 GDKVEPRKKWIEANINFS 630 (637)
T ss_pred CCCchHHHHHHHHhhhhh
Confidence 999999999999999654
No 5
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=100.00 E-value=8.8e-190 Score=1653.34 Aligned_cols=621 Identities=46% Similarity=0.780 Sum_probs=588.9
Q ss_pred CCCCCccCceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCCeEEEEECCCCcccc
Q psy13357 16 ESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPID 95 (833)
Q Consensus 16 ~~~Y~~~~I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~DgsIsV~DnGrGIPv~ 95 (833)
.++|++++|++|+|+|||||||||||||++. +||||+||||||||+||+++|+|+.|.|+|++||+|+|+|||||||++
T Consensus 5 ~~~y~~~~i~~L~~lE~VrkRP~mYiGs~~~-~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~dg~I~V~DnGrGIP~~ 83 (631)
T PRK05559 5 TNNYNADSIEVLEGLEPVRKRPGMYIGSTDT-RGLHHLVQEVIDNSVDEALAGHGKRIEVTLHADGSVSVRDNGRGIPVG 83 (631)
T ss_pred cCCCCHHHCeeccchHHHhcCCCceeCCCCC-chhhhhhhhhhccccchhhcCCCCEEEEEEeCCCcEEEEEcCCCCCcc
Confidence 3569999999999999999999999999998 899999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccceeEEEEeCCeEEEEEEEccccccccccc
Q psy13357 96 IKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKT 175 (833)
Q Consensus 96 ~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~Gk~y~q~f~~G~~~~~~~~~ 175 (833)
.||. +|+|+||+|||+|||||||++..|++|||+||||+|+|||||++|+|+++|+|+.|+|+|++|
T Consensus 84 ~~~~----~~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNalS~~l~V~s~r~g~~~~~~f~~G--------- 150 (631)
T PRK05559 84 IHPE----EGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALSSRLEVEVKRDGKVYRQRFEGG--------- 150 (631)
T ss_pred cccc----cCCcchheeeeeccccCccCCccccccCcccccchhhhhhheeeEEEEEEeCCeEEEEEEECC---------
Confidence 9998 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCceEeccC--CCCccEEEEEeCccccccccccHHHHHHHHHHhhccCCCcEEEEeecccceEEEEEeCCCcch
Q psy13357 176 INGISVSPIKIIGDT--NKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSG 253 (833)
Q Consensus 176 ~~~~~~~~l~~~g~~--~~~GT~V~F~PD~~iF~~~~~~~~~l~~RlrelA~LnpGl~I~l~der~~~~~~f~~~~Gl~~ 253 (833)
.+..|+..++.+ ..+||+|+|+||+++|++..++++.|.+|++++|||||||+|+|+|++ .++.|+|++|+.+
T Consensus 151 ---~~~~~l~~~~~~~~~~~GT~V~f~PD~~iF~~~~~~~~~i~~~l~~~A~lnpgl~i~l~d~~--~~~~f~~~~gl~~ 225 (631)
T PRK05559 151 ---DPVGPLEVVGTAGKRKTGTRVRFWPDPKIFDSPKFSPERLKERLRSKAFLLPGLTITLNDER--ERQTFHYENGLKD 225 (631)
T ss_pred ---cCccCccccccccCCCCCcEEEEEECHHHcCCcccCHHHHHHHHHHHHhhCCCeEEEEEeCC--ceEEEECCccHHH
Confidence 666776656655 679999999999999988899999999999999999999999999998 3467999999999
Q ss_pred hhhhhhcCCCccCCc-eEEEeeccccccCCceEEEEeeeecCCCcceeEEeecceeccCCcchHHHHHHHHHHHHHHHHH
Q psy13357 254 FVSYINKSKLVVHPT-IFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIE 332 (833)
Q Consensus 254 fv~~l~~~k~~l~~~-~i~~~~e~~~~~~~~i~veval~~~d~~~e~i~SFVN~I~T~~GGTHv~gf~~altr~in~y~~ 332 (833)
|+.+++.++.++|+. +++++++. +++.||||++|+++|+++++||||+|+|++||||++||++||+++||+|++
T Consensus 226 ~v~~~~~~~~~i~~~~~i~~~~~~-----~~~~veval~~~~~~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~in~~~~ 300 (631)
T PRK05559 226 YLAELNEGKETLPEEFVGSFEGEA-----EGEAVEWALQWTDEGGENIESYVNLIPTPQGGTHENGFREGLLKAVREFAE 300 (631)
T ss_pred HHHHHhCCCCccCCCCceEEeeee-----ccceEEEEEEecCCCCeEEEEEECcccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999877788876 88888765 678899999999999899999999999999999999999999999999999
Q ss_pred HcccccccCCCCCHHHHhhcceeEEEEeecCCCCCccccccccccccchhhHHHHHHHHHHHHHhCchhhHHHHHHHHHH
Q psy13357 333 ENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEA 412 (833)
Q Consensus 333 ~~~l~Kk~k~~l~~~DIregL~avIsvki~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~ak~Ii~ki~~~ 412 (833)
+.+++| ++.+++++|||+||++||||+++||+|+||||++|+|++++.+|++++++.|..||++||..|+.|+++++.+
T Consensus 301 ~~~l~k-~~~~l~~~diregl~~vvsvki~~P~FegQTK~kL~n~~v~~~v~~~v~~~l~~~l~~n~~~a~~ii~k~~~~ 379 (631)
T PRK05559 301 KRNLLP-KGKKLEGEDVREGLAAVLSVKIPEPQFEGQTKEKLGSREARRFVSGVVKDAFDLWLNQNPELAEKLAEKAIKA 379 (631)
T ss_pred HhCccc-cccCCChhhHhhceEEEEEEEcCCCcccCcccccccCHhHhhhhhhHHHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 988887 4678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHhhhcccccccccccccccccCCCCCCceEEEEeecCCCccccccccCCcceeecccCcccccccccch
Q psy13357 413 ARSREAARKTRELTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARF 492 (833)
Q Consensus 413 a~ar~aa~kar~~~r~k~~~~~~~lpgKL~dc~~kd~~~~eLflvEGDSAgGsak~gRdr~~qailPLrGKiLNv~ka~~ 492 (833)
|++|++ ++|+++|||+++. +.|||||+||++++|++|||||||||||||||||||||+||||||||||||||++++.
T Consensus 380 a~ar~~--~~~~~~r~k~~~~-~~lpgKL~dc~~~~~~~~eL~lvEGDSAggsak~grdr~~qailPLRGKiLNv~~a~~ 456 (631)
T PRK05559 380 AQARLR--AAKKVKRKKKTSG-PALPGKLADCTSQDPERTELFLVEGDSAGGSAKQARDREFQAILPLRGKILNTWEASL 456 (631)
T ss_pred HHHHHH--HHHHHhhhccccC-CCCCCcCcccccCCCCCCEEEEEeCCCCccccccccCccceeecccCCeecccccCCH
Confidence 999998 4888888888777 8999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccHhHHHHHHHhCCCCCCCCCCcCCCCCCceeeccCCCCCchhHHHHHHHHHHHhcHhhhhcCcEEEEcCcEEEEE
Q psy13357 493 EKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIK 572 (833)
Q Consensus 493 ~ki~~N~Ei~~li~alG~g~~~~~~~~~~LRY~kIiImTDADvDGsHI~~Llltff~r~~p~Li~~G~vyia~pPLykv~ 572 (833)
+||++|+||++|++|||||+| ++||+++||||||||||||||||+|||||||||||||||+||++||||+|+||||||+
T Consensus 457 ~ki~~N~Ei~~l~~alG~~~~-~~~~~~~LRY~kIiImTDaDvDGsHI~~Llltff~~~~p~Li~~G~v~~~~~Pl~kv~ 535 (631)
T PRK05559 457 DDVLANEEIHDIIVAIGIGPG-DSFDLEDLRYGKIIIMTDADVDGAHIATLLLTFFYRHFPPLVEAGHVYIALPPLYRVD 535 (631)
T ss_pred HHHhcChhHHHHHHHhCCCCC-CccCccccccCeEEEEeCCCCCcchhHHHHHHHHHHhCHhhccCCeEEEecCCEEEEE
Confidence 999999999999999999998 6899999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcceeecCHHHHHHHHHHhhcccceEeecCCCCccChHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHhcccCCCC
Q psy13357 573 YGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLD 652 (833)
Q Consensus 573 ~gk~~~y~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 652 (833)
+||++.|||||+|+++|+.+
T Consensus 536 ~gk~~~y~~~~~e~~~~~~~------------------------------------------------------------ 555 (631)
T PRK05559 536 KGKKKIYALDEEEKEELLKK------------------------------------------------------------ 555 (631)
T ss_pred cCCceEEecCHHHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999752
Q ss_pred ChHHHHHHHHHHHHHhccCCeEEEEEeecccceEEEEEEEeeCceeeEEecccccCCHHHHHHHHHHHHHHhhhcCCeEE
Q psy13357 653 TRENAEQFAKKIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVII 732 (833)
Q Consensus 653 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (833)
+
T Consensus 556 ---------------~---------------------------------------------------------------- 556 (631)
T PRK05559 556 ---------------L---------------------------------------------------------------- 556 (631)
T ss_pred ---------------h----------------------------------------------------------------
Confidence 0
Q ss_pred EcccccccceeeecCHHHHHHHHHHhccCCccceeeccCCCCCccchhhhccCcCceeEEeeeeccHHHHHHHHHHhcCC
Q psy13357 733 QKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGD 812 (833)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iqRyKGLGEMn~~qLweTtm~P~~R~l~~v~i~da~~a~~~f~~LMG~ 812 (833)
+ . ..++++||||||||||||+|||||||||++|+|+||+++|+..|+++|++|||+
T Consensus 557 --~--~--------------------~~~~~~i~ryKGLGe~~~~~~~e~~~~p~~r~l~~v~~~d~~~~~~~~~~l~g~ 612 (631)
T PRK05559 557 --G--K--------------------KGGKPEIQRFKGLGEMNPDQLWETTMDPETRRLVRVTIDDAEETEKLVDMLMGK 612 (631)
T ss_pred --c--c--------------------cCCCCCceEeCchhhcCHHHHHHHhhCccceeEEEEEccchhhHHHHHHHHhCC
Confidence 0 0 012588999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhhhcc
Q psy13357 813 NVELRRKFIELNALHA 828 (833)
Q Consensus 813 ~v~~Rr~fI~~~a~~~ 828 (833)
+|++||+||++||..+
T Consensus 613 ~~~~Rk~~i~~~~~~~ 628 (631)
T PRK05559 613 KAEPRREWIEENGDFA 628 (631)
T ss_pred CchHHHHHHHHhhhhh
Confidence 9999999999999654
No 6
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=100.00 E-value=1.5e-189 Score=1651.46 Aligned_cols=631 Identities=57% Similarity=0.935 Sum_probs=599.8
Q ss_pred CCCCccCceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCCeEEEEECCCCccccc
Q psy13357 17 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDI 96 (833)
Q Consensus 17 ~~Y~~~~I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~DgsIsV~DnGrGIPv~~ 96 (833)
++|++++|++|+|+||||+|||||||||+. +||||+|||||||||||+++|+|+.|.|+|+.||+|+|+|||||||++.
T Consensus 6 ~~Y~~~~i~~L~~lE~Vr~RPgMYiGs~~~-~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~~g~I~V~DnG~GIp~~~ 84 (638)
T PRK05644 6 QEYDASQIQVLEGLEAVRKRPGMYIGSTGE-RGLHHLVYEIVDNSIDEALAGYCDHIEVTINEDGSITVTDNGRGIPVDI 84 (638)
T ss_pred CCCCHHHCeEecchHHHhcCCCceECCCCh-hhHHhhhHHhhhcccccccCCCCCEEEEEEeCCCcEEEEEeCccccCCc
Confidence 569999999999999999999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccceeEEEEeCCeEEEEEEEcccccccccccc
Q psy13357 97 KIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTI 176 (833)
Q Consensus 97 h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~Gk~y~q~f~~G~~~~~~~~~~ 176 (833)
|+. .|+|++|+|||++|||||||++.|++|||+||+|+|+|||||++|+|+++|+|+.|+|+|++|
T Consensus 85 h~~----~ki~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~vnalS~~~~v~t~r~g~~~~~~~~~G---------- 150 (638)
T PRK05644 85 HPK----TGKPAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSTWLEVEVKRDGKIYYQEYERG---------- 150 (638)
T ss_pred cCC----CCCCchHHheeeecccCccCCCcccccCCccccchhhhhheeceEEEEEEeCCcEEEEEEECC----------
Confidence 998 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCceEeccCCCCccEEEEEeCccccccccccHHHHHHHHHHhhccCCCcEEEEeecccc--eEEEEEeCCCcchh
Q psy13357 177 NGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIK--KKEIFEFKGGTSGF 254 (833)
Q Consensus 177 ~~~~~~~l~~~g~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~RlrelA~LnpGl~I~l~der~~--~~~~f~~~~Gl~~f 254 (833)
.++.++..++.+.++||+|+|+||+++|.+..++++.|.+|++++|+|||||+|+|++++.+ +.+.|+|++|+.+|
T Consensus 151 --~~~~~~~~~~~~~~~GT~I~F~Pd~~~F~~~~~e~~~i~~rl~~~A~l~pgl~i~l~~er~~~~~~~~f~~~~Gl~dy 228 (638)
T PRK05644 151 --VPVTPLEVIGETDETGTTVTFKPDPEIFETTEFDYDTLATRLRELAFLNKGLKITLTDEREGEEKEETFHYEGGIKEY 228 (638)
T ss_pred --eEccCccccCCcCCCCcEEEEEECHHHcCCcccCHHHHHHHHHHHHhhCCCcEEEEEeccCCCcceeEEEcCCCHHHH
Confidence 66666666676678999999999999998889999999999999999999999999999843 35679999999999
Q ss_pred hhhhhcCCCccCCceEEEeeccccccCCceEEEEeeeecCCCcceeEEeecceeccCCcchHHHHHHHHHHHHHHHHHHc
Q psy13357 255 VSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEEN 334 (833)
Q Consensus 255 v~~l~~~k~~l~~~~i~~~~e~~~~~~~~i~veval~~~d~~~e~i~SFVN~I~T~~GGTHv~gf~~altr~in~y~~~~ 334 (833)
+++++.++.++++.++++.++. +++.||||++|+++|+++++||||+|+|++||||++||++||+++||+|+++.
T Consensus 229 v~~l~~~~~~~~~~~i~~~~~~-----~~~~veval~~~~~~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~l~~~~~k~ 303 (638)
T PRK05644 229 VEYLNRNKEPLHEEPIYFEGEK-----DGIEVEVAMQYNDGYSENILSFANNINTHEGGTHEEGFKTALTRVINDYARKN 303 (638)
T ss_pred HHHHhcCCCcCCCCCeEEEeec-----cCeEEEEEEEecCCCceEEEEEECcccCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999988888887788887765 67899999999999999999999999999999999999999999999999998
Q ss_pred ccccccCCCCCHHHHhhcceeEEEEeecCCCCCccccccccccccchhhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Q psy13357 335 EFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAAR 414 (833)
Q Consensus 335 ~l~Kk~k~~l~~~DIregL~avIsvki~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~ak~Ii~ki~~~a~ 414 (833)
+++|+.+.+++++|||+||++||||+++||+|+||||++|+|++++.+|++++.+.|..||++||+.|+.|+++++.+|+
T Consensus 304 ~~~Kk~~~~i~~~dIregl~~vVsv~i~nP~F~gQTKekL~~~~v~~~v~~~v~~~l~~~l~~n~~~~~~I~~~~~~~a~ 383 (638)
T PRK05644 304 KLLKEKDDNLTGEDVREGLTAVISVKHPEPQFEGQTKTKLGNSEVRGIVDSVVSEALSEFLEENPNVAKKIVEKAILAAR 383 (638)
T ss_pred CcccccCCCCChhHHhhceEEEEEEecCCCcccCcccccccCHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHH
Confidence 88877667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHhhhcccccccccccccccccCCCCCCceEEEEeecCCCccccccccCCcceeecccCcccccccccchhH
Q psy13357 415 SREAARKTRELTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEK 494 (833)
Q Consensus 415 ar~aa~kar~~~r~k~~~~~~~lpgKL~dc~~kd~~~~eLflvEGDSAgGsak~gRdr~~qailPLrGKiLNv~ka~~~k 494 (833)
+|++|+++|+++|+|+++...+|||||+||++++|++|||||||||||||||||||||+||||||||||||||++++.+|
T Consensus 384 ~r~~a~~~k~~~r~k~~~~~~~lpgKL~dc~~~~~~~~eLflvEGDSA~gsak~grdr~~qailPLrGKiLNv~~a~~~k 463 (638)
T PRK05644 384 AREAARKARELTRRKSALESSSLPGKLADCSSKDPEESELYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDK 463 (638)
T ss_pred HHHHHHHhHHHhhcccccccCCCCchhcccccCCCCccEEEEEecCCCccccccccCccceeecccCCceeccccCCHHH
Confidence 99999999999999888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccHhHHHHHHHhCCCCCCCCCCcCCCCCCceeeccCCCCCchhHHHHHHHHHHHhcHhhhhcCcEEEEcCcEEEEEeC
Q psy13357 495 IILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYG 574 (833)
Q Consensus 495 i~~N~Ei~~li~alG~g~~~~~~~~~~LRY~kIiImTDADvDGsHI~~Llltff~r~~p~Li~~G~vyia~pPLykv~~g 574 (833)
|++|+||++|++|||||++ ++||+++||||||||||||||||+|||||||||||||||+||++||||+|+||||||++|
T Consensus 464 i~~N~Ei~~l~~alG~~~~-~~~~~~~LRY~kiiImtDaD~DG~HI~~Llltff~~~~p~Li~~G~l~~~~~Pl~kv~~g 542 (638)
T PRK05644 464 ILKNEEIRALITALGTGIG-DDFDISKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYMRPLIEAGYVYIAQPPLYKIKKG 542 (638)
T ss_pred HHhCHHHHHHHHHhCCCCC-CcCChhhCccCeEEEEeCCCCCchHHHHHHHHHHHHhCHHhccCCeEEEecCCEEEEEeC
Confidence 9999999999999999998 579999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeecCHHHHHHHHHHhhcccceEeecCCCCccChHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHhcccCCCCCh
Q psy13357 575 NNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTR 654 (833)
Q Consensus 575 k~~~y~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 654 (833)
|++ ||||++|+++|+.+
T Consensus 543 k~~-~~~~~~e~~~~~~~-------------------------------------------------------------- 559 (638)
T PRK05644 543 GKE-YAYSDEELDEILAE-------------------------------------------------------------- 559 (638)
T ss_pred CeE-eecCHHHHHHHHHH--------------------------------------------------------------
Confidence 988 99999999999742
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeecccceEEEEEEEeeCceeeEEecccccCCHHHHHHHHHHHHHHhhhcCCeEEEc
Q psy13357 655 ENAEQFAKKIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVIIQK 734 (833)
Q Consensus 655 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (833)
+
T Consensus 560 -------------~------------------------------------------------------------------ 560 (638)
T PRK05644 560 -------------L------------------------------------------------------------------ 560 (638)
T ss_pred -------------h------------------------------------------------------------------
Confidence 0
Q ss_pred ccccccceeeecCHHHHHHHHHHhccCCccceeeccCCCCCccchhhhccCcCceeEEeeeeccHHHHHHHHHHhcCCCc
Q psy13357 735 SIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNV 814 (833)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iqRyKGLGEMn~~qLweTtm~P~~R~l~~v~i~da~~a~~~f~~LMG~~v 814 (833)
+ . .+.++++||||||||||||+|||||||||++|+|+||+++|++.++.+|++|||+++
T Consensus 561 ~--~-------------------~~~~~~~i~ryKGLGe~~~~~~~e~~~~~~~r~~~~v~~~d~~~~~~~f~~lmg~~~ 619 (638)
T PRK05644 561 K--L-------------------KGNPKYGIQRYKGLGEMNPEQLWETTMDPETRTLLQVTIEDAAEADEIFSILMGDDV 619 (638)
T ss_pred c--c-------------------ccCCCCceeEecCccccCHHHHHHHhcCccceeeeeeccccHHHHHHHHHHHhCCCC
Confidence 0 0 012358899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhccccCCC
Q psy13357 815 ELRRKFIELNALHAKNIDI 833 (833)
Q Consensus 815 ~~Rr~fI~~~a~~~~~ldi 833 (833)
++||+||++||..++++||
T Consensus 620 ~~Rk~~i~~~~~~~~~~d~ 638 (638)
T PRK05644 620 EPRREFIEENAKYVRNLDI 638 (638)
T ss_pred hHHHHHHHHhhhhHhhccC
Confidence 9999999999988888886
No 7
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=100.00 E-value=1e-187 Score=1631.09 Aligned_cols=616 Identities=38% Similarity=0.630 Sum_probs=573.2
Q ss_pred CCCCccCceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCCeEEEEECCCCccccc
Q psy13357 17 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDI 96 (833)
Q Consensus 17 ~~Y~~~~I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~DgsIsV~DnGrGIPv~~ 96 (833)
++|++++|++|+||||||||||||||||+ +||+|||||||||||++||+|+.|.|+|+.||+|+|+|||||||++.
T Consensus 2 ~~y~~~~i~~L~gle~VRkRPgMYigs~~----~~~lv~ElvdNsiDE~~ag~a~~I~V~i~~d~~I~V~DnGrGIp~~~ 77 (625)
T TIGR01055 2 TNYSAKDIEVLDGLEPVRKRPGMYTDTTR----PNHLVQEVIDNSVDEALAGFASIIMVILHQDQSIEVFDNGRGMPVDI 77 (625)
T ss_pred CccChhhceeecccHHhhcCCCCeeCCCC----cceeehhhhhcccchhhcCCCCEEEEEEeCCCeEEEEecCCccCccc
Confidence 45999999999999999999999999985 49999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccceeEEEEeCCeEEEEEEEcccccccccccc
Q psy13357 97 KIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTI 176 (833)
Q Consensus 97 h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~Gk~y~q~f~~G~~~~~~~~~~ 176 (833)
||+ +|+|++|++||++||||||++..|++|||+||||+|+|||||+||+|+++|+|+.|+|+|++|
T Consensus 78 h~~----~g~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vnalS~~l~v~~~r~g~~~~~~~~~G---------- 143 (625)
T TIGR01055 78 HPK----EGVSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVNALSKRVKIKVYRQGKLYSIAFENG---------- 143 (625)
T ss_pred ccc----cCCcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHHHhcCeEEEEEEECCeEEEEEEECC----------
Confidence 998 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCceEeccC--CCCccEEEEEeCccccccccccHHHHHHHHHHhhccCCCcEEEEeecccceEEEEEeCCCcchh
Q psy13357 177 NGISVSPIKIIGDT--NKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGF 254 (833)
Q Consensus 177 ~~~~~~~l~~~g~~--~~~GT~V~F~PD~~iF~~~~~~~~~l~~RlrelA~LnpGl~I~l~der~~~~~~f~~~~Gl~~f 254 (833)
.++.++..++.+ ..+||+|+|+||+++|.+..|+++.|.+|++++|||||||+|+|+|+|.+..+.|+|++|+.+|
T Consensus 144 --~~~~~~~~i~~~~~~~~GT~V~F~PD~~~F~~~~~e~~~i~~~l~~lA~lnpgi~~~l~der~~~~~~f~~~~Gi~~y 221 (625)
T TIGR01055 144 --AKVTDLISAGTCGKRLTGTSVHFTPDPEIFDSLHFSVSRLYHILRAKAVLCRGVEIEFEDEVNNTKALWNYPDGLKDY 221 (625)
T ss_pred --eEccccccccccCCCCCCeEEEEEECHHHCCCCccCHHHHHHHHHHHHhhCCCcEEEEeecCCCceeEEecCchHHHH
Confidence 666666666655 3599999999999999988999999999999999999999999999997655679999999999
Q ss_pred hhhhhcCCCccCCceEEEeeccccccCCceEEEEeeeecC-CCcceeEEeecceeccCCcchHHHHHHHHHHHHHHHHHH
Q psy13357 255 VSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNN-SYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEE 333 (833)
Q Consensus 255 v~~l~~~k~~l~~~~i~~~~e~~~~~~~~i~veval~~~d-~~~e~i~SFVN~I~T~~GGTHv~gf~~altr~in~y~~~ 333 (833)
+++++.++.++++.+++..... +++.++||++|++ +|+++++||||||+|++||||++||++||+++||+|+++
T Consensus 222 v~~l~~~~~~~~~~~~~~~~~~-----~~~~ve~al~~~~~~~~~~~~SFvN~I~T~~GGTHv~gf~~alt~~in~~~~~ 296 (625)
T TIGR01055 222 LSEAVNGDNTLPPKPFSGNFEG-----DDEAVEWALLWLPEGGELFMESYVNLIPTPQGGTHVNGLRQGLLDALREFCEM 296 (625)
T ss_pred HHHHhcCCCCCCCCceEEEEee-----CCceEEEEEEEecCCCCEEEEEeeccccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999887777776665544333 5678999999984 477889999999999999999999999999999999998
Q ss_pred cccccccCCCCCHHHHhhcceeEEEEeecCCCCCccccccccccccchhhHHHHHHHHHHHHHhCchhhHHHHHHHHHHH
Q psy13357 334 NEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAA 413 (833)
Q Consensus 334 ~~l~Kk~k~~l~~~DIregL~avIsvki~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~ak~Ii~ki~~~a 413 (833)
.++.|+ +.+++++|||+||++||||+++||+|+||||++|+|++++.+|++++.+.|..||++||..|+.|+++++.+|
T Consensus 297 ~~~~kk-~~~i~~~diregl~~vVsvki~~P~FegQTK~kL~n~~v~~~v~~~v~~~l~~~l~~n~~~a~~i~~k~~~~a 375 (625)
T TIGR01055 297 RNNLPR-GVKLTAEDIWDRCSYVLSIKMQDPQFAGQTKERLSSRQVAKFVSGVIKDAFDLWLNQNVQLAEHLAEHAISSA 375 (625)
T ss_pred hCcccc-cCCCCHHHHhhccEEEEEEeccCCcccCcccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 887665 5789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHhhhcccccccccccccccccCCCCCCceEEEEeecCCCccccccccCCcceeecccCcccccccccchh
Q psy13357 414 RSREAARKTRELTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFE 493 (833)
Q Consensus 414 ~ar~aa~kar~~~r~k~~~~~~~lpgKL~dc~~kd~~~~eLflvEGDSAgGsak~gRdr~~qailPLrGKiLNv~ka~~~ 493 (833)
++|+ ++||++.| |+.++...|||||+||+++||++|||||||||||||||||||||+|||||||||||||||+++.+
T Consensus 376 ~ar~--~~a~~~~r-k~~~~~~~lpgKL~dc~~~~~~~~eLfivEGDSA~gsak~grdr~~qailPLRGKiLNv~ka~~~ 452 (625)
T TIGR01055 376 QRRK--RAAKKVVR-KKLTSGPALPGKLADCTRQDLEGTELFLVEGDSAGGSAKQARDREYQAILPLWGKILNTWEVSLD 452 (625)
T ss_pred HHHH--HHHHHHhh-cccccCCCCCccccccccCCCCceEEEEEecCCCCccccccCCcceeEEeccCCceeecccCCHH
Confidence 9997 78888776 55777789999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccHhHHHHHHHhCCCCCCCCCCcCCCCCCceeeccCCCCCchhHHHHHHHHHHHhcHhhhhcCcEEEEcCcEEEEEe
Q psy13357 494 KIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKY 573 (833)
Q Consensus 494 ki~~N~Ei~~li~alG~g~~~~~~~~~~LRY~kIiImTDADvDGsHI~~Llltff~r~~p~Li~~G~vyia~pPLykv~~ 573 (833)
||++|+||++||+|||||+++ + ++++||||||||||||||||+|||||||||||||||+||++||||+|+||||||++
T Consensus 453 ki~~N~Ei~~li~alG~g~~~-~-~~~~LRY~kiiImTDADvDG~HI~~LLltff~r~~p~Li~~G~vy~~~~Pl~kv~~ 530 (625)
T TIGR01055 453 KVLNSQEIHDIEVALGIDPDS-N-DLSQLRYGKICILADADSDGLHIATLLCALFFLHFPKLVEEGHVYVAKPPLYRIDL 530 (625)
T ss_pred HhhcCHHHHHHHHHhCCCccc-c-cccccccceEEEEeCCCCCcchhHHHHHHHHHHhCHhhccCCeEEEEeCCEEEEec
Confidence 999999999999999999984 4 59999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeecCHHHHHHHHHHhhcccceEeecCCCCccChHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHhcccCCCCC
Q psy13357 574 GNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDT 653 (833)
Q Consensus 574 gk~~~y~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 653 (833)
||++.|+|+|.|+++++.+
T Consensus 531 gk~~~y~~~e~e~~~~~~~------------------------------------------------------------- 549 (625)
T TIGR01055 531 SKEVYYALDEEEKEKLLYK------------------------------------------------------------- 549 (625)
T ss_pred CCceEEcCCHHHHHHHHHh-------------------------------------------------------------
Confidence 9989999999998887631
Q ss_pred hHHHHHHHHHHHHHhccCCeEEEEEeecccceEEEEEEEeeCceeeEEecccccCCHHHHHHHHHHHHHHhhhcCCeEEE
Q psy13357 654 RENAEQFAKKIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVIIQ 733 (833)
Q Consensus 654 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (833)
+
T Consensus 550 --------------~----------------------------------------------------------------- 550 (625)
T TIGR01055 550 --------------L----------------------------------------------------------------- 550 (625)
T ss_pred --------------h-----------------------------------------------------------------
Confidence 0
Q ss_pred cccccccceeeecCHHHHHHHHHHhccCCccceeeccCCCCCccchhhhccCcCceeEEeeeeccHHH--HHHHHHHhcC
Q psy13357 734 KSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAIS--ADKIFMTLMG 811 (833)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iqRyKGLGEMn~~qLweTtm~P~~R~l~~v~i~da~~--a~~~f~~LMG 811 (833)
+ . ..++++||||||||||||+|||||||||++|+|+||+++|+.. |+++|++|||
T Consensus 551 -~--~--------------------~~~~~~i~ryKGLGe~~~~~~~e~~~~p~~r~l~~v~~~~~~~~~~~~~~~~lmg 607 (625)
T TIGR01055 551 -K--K--------------------KKGKPNVQRFKGLGEMNPAQLRETTMDPNTRRLVQLTLDDVQDQRVDKIMDMLLA 607 (625)
T ss_pred -c--c--------------------cCCCcceeEecccchhhHHHHHHHhhCccceecccccccchhhhhHHHHHHHHhC
Confidence 0 0 0124889999999999999999999999999999999999985 9999999999
Q ss_pred CC-chHHHHHHHHhhh
Q psy13357 812 DN-VELRRKFIELNAL 826 (833)
Q Consensus 812 ~~-v~~Rr~fI~~~a~ 826 (833)
++ |+|||+||++||.
T Consensus 608 ~~~~~~Rk~~i~~~~~ 623 (625)
T TIGR01055 608 KKRSEDRFNWLQEKGD 623 (625)
T ss_pred CCCCchhHHHHHhccc
Confidence 99 9999999999984
No 8
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=100.00 E-value=2.8e-184 Score=1616.70 Aligned_cols=648 Identities=57% Similarity=0.938 Sum_probs=600.4
Q ss_pred CCccCceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCCeEEEEECCCCccccccc
Q psy13357 19 YSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDIKI 98 (833)
Q Consensus 19 Y~~~~I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~DgsIsV~DnGrGIPv~~h~ 98 (833)
|++++|++|+|+||||+||||||||++. +||||+|+|||||||||++||+|+.|.|+|+.||+|+|+|||||||++.|+
T Consensus 1 Y~~~~i~~L~~lE~vr~RP~mYiGs~~~-~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~~g~I~V~DnG~GIp~~~h~ 79 (654)
T TIGR01059 1 YDASSIKVLEGLEAVRKRPGMYIGSTGE-TGLHHLVYEVVDNSIDEAMAGYCDTINVTINDDGSVTVEDNGRGIPVDIHP 79 (654)
T ss_pred CChHHCeEecchHHHhcCCCceeCCCCc-chHHhhhHHhhhccccccccCCCCEEEEEEeCCCcEEEEEeCCCcCccccC
Confidence 9999999999999999999999999998 899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccceeEEEEeCCeEEEEEEEcccccccccccccc
Q psy13357 99 DDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTING 178 (833)
Q Consensus 99 ~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~Gk~y~q~f~~G~~~~~~~~~~~~ 178 (833)
. .|+|.+|++||+|||||||+++.|++|||+||+|+++|||||+||+|+++++|+.|+|+|++|
T Consensus 80 ~----~ki~~~e~i~~~l~ag~kf~~~~~k~s~G~~G~gl~~inalS~~l~v~~~~~g~~~~~~~~~G------------ 143 (654)
T TIGR01059 80 E----EGISAVEVVLTVLHAGGKFDKDSYKVSGGLHGVGVSVVNALSEWLEVTVFRDGKIYRQEFERG------------ 143 (654)
T ss_pred c----CCCCchHHheeeecccCccCCCcceecCCccchhHHHHHHhcCeEEEEEEECCeEEEEEEeCC------------
Confidence 8 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceEeccCCCCccEEEEEeCccccccccccHHHHHHHHHHhhccCCCcEEEEeeccc--ceEEEEEeCCCcchhhh
Q psy13357 179 ISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERI--KKKEIFEFKGGTSGFVS 256 (833)
Q Consensus 179 ~~~~~l~~~g~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~RlrelA~LnpGl~I~l~der~--~~~~~f~~~~Gl~~fv~ 256 (833)
.++.|+++.+.+.++||+|+|+|||++|.+..++++.|.+|++++|+|||||+|+|++++. ++.+.|+|++|+.+|++
T Consensus 144 ~~~~~l~~~~~~~~~GT~V~F~pdp~~F~~~~~e~~~i~~rl~~~A~l~pgl~i~l~~er~~~~~~~~f~~~~Gl~~yv~ 223 (654)
T TIGR01059 144 IPLGPLEVVGETKKTGTTVRFWPDPEIFETTEFDFDILAKRLRELAFLNSGVKISLEDERDGKGKSVTFHYEGGIKSFVK 223 (654)
T ss_pred CcccCceeccCCCCCCcEEEEEEChHHhCCcccCHHHHHHHHHHhhccCCCeEEEEEeecCCCCceeEEEcCCcHHHHHH
Confidence 6777887788788899999999999999988999999999999999999999999999985 34678999999999999
Q ss_pred hhhcCCCccCCceEEEeeccccccCCceEEEEeeeecCCCcceeEEeecceeccCCcchHHHHHHHHHHHHHHHHHHccc
Q psy13357 257 YINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEF 336 (833)
Q Consensus 257 ~l~~~k~~l~~~~i~~~~e~~~~~~~~i~veval~~~d~~~e~i~SFVN~I~T~~GGTHv~gf~~altr~in~y~~~~~l 336 (833)
+++.+++++++++++++++. +++.||||++|+++|+++++||||+|+|++||||++||++||+++||+|+++.++
T Consensus 224 ~l~~~~~~l~~~~i~~~~~~-----~~~~veva~~~~~~~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~i~~~~~~~~l 298 (654)
T TIGR01059 224 YLNRNKEPLHEEIIYIKGEK-----EGIEVEVALQWNDGYSENILSFVNNINTREGGTHLEGFRSALTRVINSYAKNNKL 298 (654)
T ss_pred HHhcCCCcCCCCCeEEEecc-----cCeEEEEEEEecCCCceeEEEEECcccCCCCCcHHHHHHHHHHHHHHHHHHHhCc
Confidence 99988888888899998865 6789999999999999999999999999999999999999999999999999888
Q ss_pred ccccCCCCCHHHHhhcceeEEEEeecCCCCCccccccccccccchhhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHH
Q psy13357 337 LKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSR 416 (833)
Q Consensus 337 ~Kk~k~~l~~~DIregL~avIsvki~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~ak~Ii~ki~~~a~ar 416 (833)
+|+.+.+++++|||+||++||||+++||+|+||||++|+|++++.+|++++.+.|..||++||..|+.|+++++.+|++|
T Consensus 299 ~K~~~~~i~~~diregl~~vvsv~i~~P~F~gQTK~kL~~~~v~~~v~~~v~~~l~~~l~~n~~~a~~iv~k~~~~a~~r 378 (654)
T TIGR01059 299 LKESKPNLTGEDIREGLTAVISVKVPDPQFEGQTKTKLGNSEVRSIVESLVYEKLTEFFEENPQEAKAIVEKAILAAQAR 378 (654)
T ss_pred ccccCCCCCHHHHhhccEEEEEEecCCCcccCcccccccChhHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 88777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHhhhcccccccccccccccccCCCCCCceEEEEeecCCCccccccccCCcceeecccCcccccccccchhHhh
Q psy13357 417 EAARKTRELTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKII 496 (833)
Q Consensus 417 ~aa~kar~~~r~k~~~~~~~lpgKL~dc~~kd~~~~eLflvEGDSAgGsak~gRdr~~qailPLrGKiLNv~ka~~~ki~ 496 (833)
++|+++|++.|+|++...++|||||+||+++||++|||||||||||||||||||||+|||||||||||||||+++.++|+
T Consensus 379 ~~a~~~k~~~r~k~~~~~~~lpgKL~dc~~~~~~~~eL~lvEGDSA~gsak~gRd~~~qai~PLrGKiLNv~~~~~~ki~ 458 (654)
T TIGR01059 379 EAARKARELTRRKSALDSGGLPGKLADCSSKDPSKSELYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARLDKIL 458 (654)
T ss_pred HHHHHhHHHhhcccccccCCCCcCccCcccCCCCCCEEEEEecCCCCcccccccccccccccccCCccchhccCCHHHHh
Confidence 99999999999998888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHhHHHHHHHhCCCCCCCCCCcCCCCCCceeeccCCCCCchhHHHHHHHHHHHhcHhhhhcCcEEEEcCcEEEEEeCCc
Q psy13357 497 LSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNN 576 (833)
Q Consensus 497 ~N~Ei~~li~alG~g~~~~~~~~~~LRY~kIiImTDADvDGsHI~~Llltff~r~~p~Li~~G~vyia~pPLykv~~gk~ 576 (833)
+|+||++|++|||||++ ++||+++||||||||||||||||+|||||||||||||||+||++||||+|+||||||++||+
T Consensus 459 ~n~Ei~~l~~~lG~~~~-~~~~~~~LrY~kiiImtDaD~DG~HI~~Lll~ff~~~~p~Li~~g~~~~~~~Pl~kv~~g~~ 537 (654)
T TIGR01059 459 SNQEIGAIITALGCGIG-KDFDLEKLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIENGYVYIAQPPLYKVKKGKK 537 (654)
T ss_pred hChHHHHHHHHhCCCcc-ccccccccccceEEEEeCCCCCcchhHHHHHHHHHHhcHhhccCCeEEEecCCEEEEEeCCe
Confidence 99999999999999998 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCHHHHHHHHHHhhcccceEeecCCCCccChHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHhcccCCCCChHH
Q psy13357 577 ECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTREN 656 (833)
Q Consensus 577 ~~y~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 656 (833)
+.|+||+++++ +..+..+
T Consensus 538 ~~~~~~~~~~~--~~~~~~~------------------------------------------------------------ 555 (654)
T TIGR01059 538 ERYIKDDKEKE--LVGEALE------------------------------------------------------------ 555 (654)
T ss_pred eeecccchhhh--ccccccc------------------------------------------------------------
Confidence 99999999875 1100000
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeecccceEEEEEEEeeCceeeEEecccccCCHHHHHHHHHHHHHHhhhcCCeEEEccc
Q psy13357 657 AEQFAKKIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVIIQKSI 736 (833)
Q Consensus 657 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (833)
+. +
T Consensus 556 -----------~~-------------~----------------------------------------------------- 558 (654)
T TIGR01059 556 -----------DL-------------R----------------------------------------------------- 558 (654)
T ss_pred -----------cc-------------c-----------------------------------------------------
Confidence 00 0
Q ss_pred ccccceeeecCHHHHHHHHHHhc----cCCccceeeccCCCCCccchhhhccCcCceeEEeeeeccHHHHHHHHHHhcCC
Q psy13357 737 GEKIKKYTANNFYKIINYLRNEA----ENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGD 812 (833)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iqRyKGLGEMn~~qLweTtm~P~~R~l~~v~i~da~~a~~~f~~LMG~ 812 (833)
+..+.|-.++-+++.+.+ +++++||||||||||+|+|||||||||++|+|+||+++|+..++++|++|||+
T Consensus 559 -----e~Y~~dd~e~e~~l~~l~~~~~~~~~~IqryKGLGem~~~~l~ettmdp~~R~l~~v~l~d~~~~~~~f~~lmg~ 633 (654)
T TIGR01059 559 -----ALYIYSDKEKEEAKTQIPVHEGRKGIEIQRYKGLGEMNADQLWETTMDPESRTLLKVTIEDAVEADRIFSTLMGD 633 (654)
T ss_pred -----ceecCCHHHHHHHHHhccccccCCCcceeeeCchhhcCHHHHHHHhcCcccceeeeeecchHHHHHHHHHHHhCC
Confidence 000011111122221111 24688999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhhhccccCCC
Q psy13357 813 NVELRRKFIELNALHAKNIDI 833 (833)
Q Consensus 813 ~v~~Rr~fI~~~a~~~~~ldi 833 (833)
+|++||+||++||..+.+||+
T Consensus 634 ~~~~Rk~~I~~~~~~~~~ld~ 654 (654)
T TIGR01059 634 EVEPRREFIEANALDVKNLDV 654 (654)
T ss_pred CchHHHHHHHHhhhhHhhcCC
Confidence 999999999999976666875
No 9
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=100.00 E-value=1.5e-176 Score=1528.06 Aligned_cols=570 Identities=27% Similarity=0.431 Sum_probs=522.0
Q ss_pred cCceeccchhhhhhCCCeeeecCCCc----------------CchhHHHHHHHHHHHhhhcC---CCCCeEEEEEecCCe
Q psy13357 22 SSIQILEGLEAVRKRPEMYIGDTSDG----------------TGLHHLVFEILDNAIDESLA---GYCTKINVTIYSDNS 82 (833)
Q Consensus 22 ~~I~vLeglE~VRkRPgMYIGst~~~----------------~GL~hlv~EIVdNsiDE~~a---G~~~~I~V~I~~Dgs 82 (833)
++|++|+|+||||+|||||||||+.. +|||||||||||||+||+++ |+|+.|+|+|+ ||+
T Consensus 2 ~~i~~L~~lE~Vr~RPgmYIGs~~~~~~~~~~~~~~~~~~~~~GL~hi~~EIldNavDe~~~~~~g~~~~I~V~i~-dgs 80 (602)
T PHA02569 2 DEFKVLSDREHILKRPGMYIGSVAYEAHERFLFGKFTQVEYVPGLVKIIDEIIDNSVDEAIRTNFKFANKIDVTIK-NNQ 80 (602)
T ss_pred CceeEccchHHHhcCCCceeCCCCcccccceeecccccccccccceeeeehhhhhhhhhhhccCCCCCcEEEEEEc-CCE
Confidence 68999999999999999999999972 89999999999999999999 99999999999 999
Q ss_pred EEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccceeEEEEeCCeEEEEE
Q psy13357 83 ISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYME 162 (833)
Q Consensus 83 IsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~Gk~y~q~ 162 (833)
|||+||||||||++|++. ++.++|++|+|||+|||||||| ++|++||||||||+|||||||+||+|+++|+|+.|+|+
T Consensus 81 isV~dnGrGIPv~~h~~~-~g~~~~~~E~i~t~LhaGgkFd-~~ykvSGGlhGVG~svvNaLS~~~~V~v~~~~~~~~q~ 158 (602)
T PHA02569 81 VTVSDNGRGIPQAMVTTP-EGEEIPGPVAAWTRTKAGSNFD-DTNRVTGGMNGVGSSLTNFFSVLFIGETCDGKNEVTVN 158 (602)
T ss_pred EEEEECCCcccCCccccc-ccccccceEEEEEeeccccccC-CcceeeCCcCCccceeeeccchhhheEEEcCCEEEEEE
Confidence 999999999999999741 0124899999999999999995 67999999999999999999999999999999999999
Q ss_pred EEcccccccccccccccccCCceEeccCCCCccEEEEEeCcccccccccc---HHHHHHHHHHhhccCCCcEEEEeeccc
Q psy13357 163 FRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFH---YEILKKRIRELSFLNNGVCITLIDERI 239 (833)
Q Consensus 163 f~~G~~~~~~~~~~~~~~~~~l~~~g~~~~~GT~V~F~PD~~iF~~~~~~---~~~l~~RlrelA~LnpGl~I~l~der~ 239 (833)
|++| .+..++. .+.+.++||+|+||||++||++..|+ +++|.+||+++|||||||+|+|+|+|.
T Consensus 159 f~~G------------~~~~~~~-~~~~~~~GT~V~F~PD~~iF~~~~~~~~~~~~l~~Rl~elA~Ln~Gl~I~l~der~ 225 (602)
T PHA02569 159 CSNG------------AENISWS-TKPGKGKGTSVTFIPDFSHFEVNGLDQQYLDIILDRLQTLAVVFPDIKFTFNGKKV 225 (602)
T ss_pred ecCC------------cccCCcc-cCCCCCCccEEEEEECHHHhCCCccCccHHHHHHHHHHHHhcCCCCCEEEEEecCC
Confidence 9999 4555554 46667899999999999999877775 789999999999999999999999985
Q ss_pred ceEEEEEeCCCcchhhhhhhcCCCccCCceEEEeeccccccCCceEEEEeeeec-CCCcceeEEeecceeccCCcchHHH
Q psy13357 240 KKKEIFEFKGGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWN-NSYNENILCFTNNILQVDGGTHLTG 318 (833)
Q Consensus 240 ~~~~~f~~~~Gl~~fv~~l~~~k~~l~~~~i~~~~e~~~~~~~~i~veval~~~-d~~~e~i~SFVN~I~T~~GGTHv~g 318 (833)
+ +|+.+|+++++. +++++++ + .|++|++|+ ++| +++||||||+|++||||++|
T Consensus 226 ~--------~g~~~yv~~~~~-------~~i~~~~-------~--~veva~~~~~~~~--~~~SFvN~I~T~~GGTHv~g 279 (602)
T PHA02569 226 S--------GKFKKYAKQFGD-------DTIVQEN-------D--NVSIALAPSPDGF--RQLSFVNGLHTKNGGHHVDC 279 (602)
T ss_pred C--------CCHHHHHHHhCC-------CCeEEec-------C--cEEEEEEecCCCc--EEEEEECcccCCCCCCHHHH
Confidence 2 689999999853 2455543 2 388999998 777 47999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcccccccCCCCCHHHHhhcceeEEEEe-ecCCCCCcccccccccc--ccchhhHHHHHHHHHHHH
Q psy13357 319 LRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIK-IPDPKFNSQTKNKLVSS--EVRKPVEEIIIKTLFDFL 395 (833)
Q Consensus 319 f~~altr~in~y~~~~~l~Kk~k~~l~~~DIregL~avIsvk-i~nP~FegQTK~kL~n~--ev~~~v~~~v~~~l~~~l 395 (833)
|++||+++||+|+++ +.+.+++++|||+||++||||+ ++||+|+||||++|+|+ +++..| +++.+.|..||
T Consensus 280 f~~altr~in~~~~k-----k~~~~l~~~diregL~avVsvk~i~~P~FegQTK~kL~~~~~~~~~~v-~~~~~~l~~~l 353 (602)
T PHA02569 280 VMDDICEELIPMIKK-----KHKIEVTKARVKECLTIVLFVRNMSNPRFDSQTKERLTSPFGEIRNHI-DLDYKKIAKQI 353 (602)
T ss_pred HHHHHHHHHHHHHHh-----cccCCCCHHHHHhCCEEEEEEeccCCCcccCcccccccCChHHhccce-eehHHHHHHHH
Confidence 999999999999874 3346899999999999999998 99999999999999999 699999 99999999999
Q ss_pred HhCchhhHHHHHHHHHHHHHHHHHHHhH---Hhhhccccc-ccccccccccccCCCCCCceEEEEeecCCCccccccccC
Q psy13357 396 QENPGESKLICEKIIEAARSREAARKTR---ELTRKKNLI-DDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRD 471 (833)
Q Consensus 396 ~~np~~ak~Ii~ki~~~a~ar~aa~kar---~~~r~k~~~-~~~~lpgKL~dc~~kd~~~~eLflvEGDSAgGsak~gRd 471 (833)
++||..++.|+++++.+++||++++++| +..|+|... +.++|||| |++||||||||||||||||||||
T Consensus 354 ~~n~~~~~~i~~~a~~~~~ar~a~~~~k~~k~~~r~k~~~~~~a~lpGk--------~~~~eL~ivEGDSAggsAk~~Rd 425 (602)
T PHA02569 354 LKTEAIIMPIIEAALARKLAAEKAAETKAAKKAKKAKVAKHIKANLIGK--------DAETTLFLTEGDSAIGYLIEVRD 425 (602)
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccCCCCCC--------CCCceEEEEecCCCCcccccccC
Confidence 9999999999999999999999886443 777777666 57999998 78999999999999999999999
Q ss_pred CcceeecccCcccccccccchhHhhccHhHHHHHHHhCCCCCCCCCCcCCCCCCceeeccCCCCCc-hhHHHHHHHHHHH
Q psy13357 472 RRFQAVLPLRGKVLNIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDG-AHIRALLLTFFYR 550 (833)
Q Consensus 472 r~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li~alG~g~~~~~~~~~~LRY~kIiImTDADvDG-sHI~~Llltff~r 550 (833)
|+||||||||||||||++|+.+||++|+||++|++|||||+| ++| ++|||||||||||||||| |||||||||||||
T Consensus 426 R~~qaIlPLRGKiLNV~ka~~~ki~~N~Ei~~li~alG~g~g-~~~--~~LRY~kIiImTDADvDG~sHIr~LLltff~~ 502 (602)
T PHA02569 426 EELHGGYPLRGKVLNTWGMSYADILKNKELFDICAITGLVLG-EKA--ENMNYKNIAIMTDADVDGKGSIYPLLLAFFSR 502 (602)
T ss_pred ccceeecccCCcccchhhCCHHHhhcchhHHHHHHHhCCCcC-ccc--cccccCcEEEEecCCCcchHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998 467 499999999999999999 9999999999999
Q ss_pred hcHhhhhcCcEEEEcCcEEEEEeCCcceeecCHHHHHHHHHHhhcccceEeecCCCCccChHHHHHHHHHHHHHHHHHHH
Q psy13357 551 KMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHR 630 (833)
Q Consensus 551 ~~p~Li~~G~vyia~pPLykv~~gk~~~y~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (833)
||+||++||||+|+||||||++||++.||||++|+++|+.+
T Consensus 503 -~p~Li~~G~v~~~~~Pl~kv~~gk~~~~~~~~~e~~~~~~~-------------------------------------- 543 (602)
T PHA02569 503 -WPELFEQGRIRFVKTPVIIAQVGKETKWFYSLDEFEKAKDS-------------------------------------- 543 (602)
T ss_pred -chhhccCCeEEEecCCEEEEEcCCeeEEecCHHHHHHHHHh--------------------------------------
Confidence 99999999999999999999999999999999999999631
Q ss_pred HhcccCHHHHHHHHhcccCCCCChHHHHHHHHHHHHHhccCCeEEEEEeecccceEEEEEEEeeCceeeEEecccccCCH
Q psy13357 631 LKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNK 710 (833)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 710 (833)
+
T Consensus 544 -------------------------------------~------------------------------------------ 544 (602)
T PHA02569 544 -------------------------------------L------------------------------------------ 544 (602)
T ss_pred -------------------------------------c------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHhhhcCCeEEEcccccccceeeecCHHHHHHHHHHhccCCccceeeccCCCCCccchhhhccCcCcee
Q psy13357 711 DYKKLVSIISTFKKIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRC 790 (833)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iqRyKGLGEMn~~qLweTtm~P~~R~ 790 (833)
++++||||||||||||+|||||||||+
T Consensus 545 --------------------------------------------------~~~~i~~yKGLGe~~~~~~~e~~~~p~--- 571 (602)
T PHA02569 545 --------------------------------------------------KKWSIRYIKGLGSLRKSEYRRVINNPV--- 571 (602)
T ss_pred --------------------------------------------------CCcceEEeccCCCCCHHHHHHHhcCcc---
Confidence 136799999999999999999999999
Q ss_pred EEeeeeccHHHHHHHHHHhcCCCchHHHHHHHH
Q psy13357 791 LLKVKIKDAISADKIFMTLMGDNVELRRKFIEL 823 (833)
Q Consensus 791 l~~v~i~da~~a~~~f~~LMG~~v~~Rr~fI~~ 823 (833)
|++|+++| .|+++|++|||++|++||+||++
T Consensus 572 l~~~~~~d--~~~~~~~~l~g~~~~~Rk~wi~~ 602 (602)
T PHA02569 572 YDVVVLPD--DWKELFEMLFGDDADLRKDWMSQ 602 (602)
T ss_pred cEEEecCc--hHHHHHHHHhCCCchHHHHHhhC
Confidence 99999998 48999999999999999999963
No 10
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=100.00 E-value=4.5e-175 Score=1522.71 Aligned_cols=589 Identities=53% Similarity=0.847 Sum_probs=555.5
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecCCeEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCCcce
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYK 128 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~DgsIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~yk 128 (833)
||||+|||||||||||+++|+|+.|.|+|+.||+|+|+|||||||++.|++ .++|++|+|||++|||||||++.|+
T Consensus 1 GL~~~v~ElvdNAiD~~~~g~at~I~V~i~~~g~I~V~DnG~GIp~~~h~~----~~~~~~e~v~~~lhag~kfd~~~~k 76 (594)
T smart00433 1 GLHHLVDEIVDNAADEALAGYMDTIKVTIDKDNSISVEDNGRGIPVEIHPK----EKKYAPEVIFTVLHAGGKFDDDAYK 76 (594)
T ss_pred CceEEEeeehhcccchhccCCCCEEEEEEeCCCeEEEEEeCCceeCCccCc----CCCCcHHHhhhhhcccCCCCCCCcc
Confidence 899999999999999999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred ecCCcccccchhhhhcccceeEEEEeCCeEEEEEEEc-ccccccccccccccccCCceEeccCCCCccEEEEEeCccccc
Q psy13357 129 ISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRY-GVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFS 207 (833)
Q Consensus 129 vSgGlhGvG~svvNAlS~~~~Vev~r~Gk~y~q~f~~-G~~~~~~~~~~~~~~~~~l~~~g~~~~~GT~V~F~PD~~iF~ 207 (833)
+|||+||+|+|+|||||++|+|+|+|+|+.|+|+|++ | .+++++++.+.+.++||+|+|+||+++|.
T Consensus 77 ~s~G~~G~Gls~vnalS~~l~v~~~~~g~~~~~~~~~~G------------~~~~~~~~~~~~~~~GT~V~F~Pd~~~F~ 144 (594)
T smart00433 77 VSGGLHGVGASVVNALSTEFEVEVARDGKEYKQSFSNNG------------KPLSEPKIIGDTKKDGTKVTFKPDLEIFG 144 (594)
T ss_pred ccCCcccchHHHHHHhcCceEEEEEeCCcEEEEEEeCCC------------eECccceecCCCCCCCcEEEEEECHHHhC
Confidence 9999999999999999999999999999999999988 6 78888877777788999999999999998
Q ss_pred cc-cccHHHHHHHHHHhhccCCCcEEEEeecccceEEEEEeCCCcchhhhhhhcCCCccCCceEEEeeccccccCCceEE
Q psy13357 208 NI-EFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINI 286 (833)
Q Consensus 208 ~~-~~~~~~l~~RlrelA~LnpGl~I~l~der~~~~~~f~~~~Gl~~fv~~l~~~k~~l~~~~i~~~~e~~~~~~~~i~v 286 (833)
.. .++++.|.+|++++|+|||||+|+|+|++....++|+|++|+.+|+++++.++.++++.|+++.++. +++.|
T Consensus 145 ~~~~~~~~~i~~rl~~~A~l~pgl~i~l~der~~~~~~f~~~~Gl~~yv~~~~~~~~~~~~~~i~~~~~~-----~~~~v 219 (594)
T smart00433 145 MTTDDDFELLKRRLRELAFLNKGVKITLNDERSDEEETFLFEGGIKDYVELLNKNKELLSPEPTYIEGEK-----DNIRV 219 (594)
T ss_pred CcccchHHHHHHHHHHHHhcCCCcEEEEeccCCCcceEEECCCCHHHHHHHHhCCCCcccCCCeEEEEEe-----CCcEE
Confidence 65 8999999999999999999999999999966666799999999999999988888888888887765 67899
Q ss_pred EEeeeecCCCcceeEEeecceeccCCcchHHHHHHHHHHHHHHHHHHcccccccCCCCCHHHHhhcceeEEEEeecCCCC
Q psy13357 287 DVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKF 366 (833)
Q Consensus 287 eval~~~d~~~e~i~SFVN~I~T~~GGTHv~gf~~altr~in~y~~~~~l~Kk~k~~l~~~DIregL~avIsvki~nP~F 366 (833)
|||++|+++|+++++||||+|+|++||||++||++||+++||+|+++.++.|+ .+++++|||+||++||||+++||+|
T Consensus 220 eval~~~~~~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~i~~~~~~~~~~k~--~~i~~~diregl~~vIsvki~~P~F 297 (594)
T smart00433 220 EVAFQYTDGYSENIVSFVNNIATTEGGTHENGFKDALTRVINEYAKKKKKLKE--KNIKGEDVREGLTAFISVKIPEPQF 297 (594)
T ss_pred EEEEEccCCCCcEEEEEECCccCCCCCcHHHHHHHHHHHHHHHHHHHhCcccc--CCCChhhHhhCeEEEEEEEEchhee
Confidence 99999999998999999999999999999999999999999999998887764 6899999999999999999999999
Q ss_pred CccccccccccccchhhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHhHHhhhcccccccccccccccccCC
Q psy13357 367 NSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDDIELSTKLADCQE 446 (833)
Q Consensus 367 egQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~ak~Ii~ki~~~a~ar~aa~kar~~~r~k~~~~~~~lpgKL~dc~~ 446 (833)
+||||++|+|++++.+|++++++.|..||++||..|+.|+++++.+|++|++|+++|++.|+| ++....|||||+||++
T Consensus 298 egQTK~kL~n~~~~~~v~~~v~~~l~~~l~~n~~~a~~ii~k~~~~a~ar~~a~~~~~~~r~k-~~~~~~l~~KL~dc~~ 376 (594)
T smart00433 298 EGQTKEKLGTSEVRFGVEKIVSECLLSFLEENPVEASKIVEKVLLAAKARAAAKKARELTRKK-KLSKISLPGKLADASS 376 (594)
T ss_pred cccccccccChhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc-cccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999888 7777899999999999
Q ss_pred CCCCceEEEEeecCCCccccccccCCcceeecccCcccccccccchhHhhccHhHHHHHHHhCCCCCCCCCCcCCCCCCc
Q psy13357 447 KNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHR 526 (833)
Q Consensus 447 kd~~~~eLflvEGDSAgGsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li~alG~g~~~~~~~~~~LRY~k 526 (833)
+++++|||||||||||||||||||||+||||||||||||||++++.+||++|+||++|++|||||++ ++||+++|||||
T Consensus 377 ~~~~~~eL~ivEGDSA~gsak~grdr~~qailPLrGKiLNv~~~~~~ki~~N~Ei~~li~alG~~~~-~~~~~~~LRY~k 455 (594)
T smart00433 377 AGPKKCELFLVEGDSAGGSAKSGRDRDFQAILPLRGKLLNVEKASLDKILKNEEIQALITALGLGIG-KDFDIEKLRYGK 455 (594)
T ss_pred CCCCCcEEEEEecCCCccccccccCccceeecccCCeecchhhccHHHHhhCHHHHHHHHHhCCCcC-cccCccccccce
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 579999999999
Q ss_pred eeeccCCCCCchhHHHHHHHHHHHhcHhhhhcCcEEEEcCcEEEEEeCCc--ceeecCHHHHHHHHHHhhcccceEeecC
Q psy13357 527 IIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNN--ECYLRDDIEEERYMLKIAFKNVKLISIE 604 (833)
Q Consensus 527 IiImTDADvDGsHI~~Llltff~r~~p~Li~~G~vyia~pPLykv~~gk~--~~y~~~~~e~~~~~~~~~~~~~~~~~~~ 604 (833)
|||||||||||+|||||||||||||||+||++||||+|+||||||++||+ ..++|+++|+.+|+..
T Consensus 456 IiImtDaDvDG~HI~~Llltff~r~~p~Li~~G~vy~~~~Pl~ki~~g~~~~~~~~~~~~~~~~~~~~------------ 523 (594)
T smart00433 456 IIIMTDADVDGSHIKGLLLTFFYRYMPPLIEAGFVYIAIPPLYKVTKGKKKYVYSFYSLDEYEKWLET------------ 523 (594)
T ss_pred EEEEeCCCCCcchhHHHHHHHHHHhChhhhhCCeEEEecCCEEEEEeCCcceEEeehhhHHHHHHHHh------------
Confidence 99999999999999999999999999999999999999999999999986 4556666666666431
Q ss_pred CCCccChHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHhcccCCCCChHHHHHHHHHHHHHhccCCeEEEEEeecccc
Q psy13357 605 NGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSNIEIIVEFDQLNN 684 (833)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 684 (833)
..
T Consensus 524 --------------------------------------------------------------~~---------------- 525 (594)
T smart00433 524 --------------------------------------------------------------KG---------------- 525 (594)
T ss_pred --------------------------------------------------------------hh----------------
Confidence 00
Q ss_pred eEEEEEEEeeCceeeEEecccccCCHHHHHHHHHHHHHHhhhcCCeEEEcccccccceeeecCHHHHHHHHHHhccCCcc
Q psy13357 685 KYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVI 764 (833)
Q Consensus 685 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (833)
+ .+++++
T Consensus 526 --------------------------------------------------~-----------------------~~~~~~ 532 (594)
T smart00433 526 --------------------------------------------------G-----------------------NKSKYE 532 (594)
T ss_pred --------------------------------------------------c-----------------------cCCCcc
Confidence 0 023588
Q ss_pred ceeeccCCCCCccchhhhccCcCceeEEeeeeccHHHHHHHHHHhcCCCchHHHHHHHHhh
Q psy13357 765 KQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNA 825 (833)
Q Consensus 765 iqRyKGLGEMn~~qLweTtm~P~~R~l~~v~i~da~~a~~~f~~LMG~~v~~Rr~fI~~~a 825 (833)
||||||||||||+|||||||||++|+|+||+++|+..|+++|++|||++|+|||+||++||
T Consensus 533 i~ryKGLGe~~~~~~~e~~~~p~~r~l~~v~~~d~~~~~~~~~~l~g~~~~~Rk~~i~~~~ 593 (594)
T smart00433 533 IQRYKGLGEMNADQLWETTMDPERRTLLFVTLDDADEADLIFSALMGDKVEPRKEWIEENA 593 (594)
T ss_pred ceeccccccCCHHHHHHHhcCccceeEEEEEcCchhhHHHHHHHHcCCCchHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999997
No 11
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=100.00 E-value=4.3e-170 Score=1549.01 Aligned_cols=597 Identities=26% Similarity=0.362 Sum_probs=546.5
Q ss_pred ccCceeccchhhhhhCCCeeeecCCCc----------------------CchhHHHHHHHHHHHhhhc----CCCCCeEE
Q psy13357 21 ASSIQILEGLEAVRKRPEMYIGDTSDG----------------------TGLHHLVFEILDNAIDESL----AGYCTKIN 74 (833)
Q Consensus 21 ~~~I~vLeglE~VRkRPgMYIGst~~~----------------------~GL~hlv~EIVdNsiDE~~----aG~~~~I~ 74 (833)
++.||+|+|+||||+|||||||||+.. +|||||||||||||+||++ +|+|+.|+
T Consensus 7 ~~~yq~L~~lEhVr~RP~mYIGS~~~~~~~~wv~~~~~~~m~~~~v~~vpGL~ki~dEIldNAvDe~~r~~~~g~~~~I~ 86 (1388)
T PTZ00108 7 EERYQKKTQIEHILLRPDTYIGSIETQTEDMWVYDEEKNRMVYKTITYVPGLYKIFDEILVNAADNKARDKGGHRMTYIK 86 (1388)
T ss_pred HHhhhcccchhHHhcCCCceeCCCCccccceeeecccccccccccccccchhhhhHHHHhhhhhhhhcccCCCCCccEEE
Confidence 467999999999999999999999873 6999999999999999999 68999999
Q ss_pred EEEecC-CeEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccceeEEEE
Q psy13357 75 VTIYSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTIN 153 (833)
Q Consensus 75 V~I~~D-gsIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~~Vev~ 153 (833)
|+|++| |+|||+||||||||++|++ +|+|+||+|||+||||||||++.|++||||||||+|||||||+||+|+|+
T Consensus 87 V~i~~d~g~IsV~dnGrGIPv~~h~~----~~~~~pElIft~L~aGgkfdd~~yKvSGGlhGVGasvvNalS~~f~Vev~ 162 (1388)
T PTZ00108 87 VTIDEENGEISVYNDGEGIPVQIHKE----HKIYVPEMIFGHLLTSSNYDDTEKRVTGGRNGFGAKLTNIFSTKFTVECV 162 (1388)
T ss_pred EEEeccCCeEEEEecCCcccCCCCCC----CCCccceEEEEEeeccccCCCCceeeecccccCCccccccccceEEEEEE
Confidence 999998 9999999999999999998 89999999999999999999999999999999999999999999999999
Q ss_pred eC--CeEEEEEEEcccccccccccccccccCCceEeccC-C-CCccEEEEEeCccccccccccHHH---HHHHHHHhhcc
Q psy13357 154 RN--KKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDT-N-KQGTKIHFWVDEKIFSNIEFHYEI---LKKRIRELSFL 226 (833)
Q Consensus 154 r~--Gk~y~q~f~~G~~~~~~~~~~~~~~~~~l~~~g~~-~-~~GT~V~F~PD~~iF~~~~~~~~~---l~~RlrelA~L 226 (833)
|+ |+.|+|+|++||. .+..| +++.+ . ++||+|+|+||+++|++..|++++ |.+|++++|||
T Consensus 163 r~~~gk~y~q~f~~Gm~----------~~~~p--~i~~~~~~~~GT~VtF~PD~~iF~~~~fd~d~~~ll~~Rl~dlA~l 230 (1388)
T PTZ00108 163 DSKSGKKFKMTWTDNMS----------KKSEP--RITSYDGKKDYTKVTFYPDYAKFGMTEFDDDMLRLLKKRVYDLAGC 230 (1388)
T ss_pred ECCCCCEEEEEecCCCc----------CCCCC--ccCCCCCCCCceEEEEEeCHHHcCCCccChHHHHHHHHHHHHHhcC
Confidence 99 9999999999952 34444 34444 3 799999999999999988999998 99999999999
Q ss_pred CCCcEEEEeecccceEEEEEeCCCcchhhhhhh---cCCCccCCceEEEeeccccccCCceEEEEeeeecCCCcceeEEe
Q psy13357 227 NNGVCITLIDERIKKKEIFEFKGGTSGFVSYIN---KSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCF 303 (833)
Q Consensus 227 npGl~I~l~der~~~~~~f~~~~Gl~~fv~~l~---~~k~~l~~~~i~~~~e~~~~~~~~i~veval~~~d~~~e~i~SF 303 (833)
||||+|+|+|++. |+.+|++|++ .+..++++.++.+.++. .+..||||++|++ ++++++||
T Consensus 231 n~GLkI~lnder~----------gi~~F~~y~~ly~~~~~~~~~~~~~~~~~~-----~~~~~eVal~~s~-~~~~~~SF 294 (1388)
T PTZ00108 231 FGKLKVYLNGERI----------AIKSFKDYVDLYLPDGEEGKKPPYPFVYTS-----VNGRWEVVVSLSD-GQFQQVSF 294 (1388)
T ss_pred CCCcEEEEeCccc----------cHHHHHHHHHhhccCCccCCCCceeeeccc-----cCceEEEEEEEeC-CCceEEEE
Confidence 9999999999872 7899999983 34444433233355554 5688999999998 67889999
Q ss_pred ecceeccCCcchHHHHHHHHHHHHHHHHHHcccccccCCCCCHHHHhhcceeEEEEeecCCCCCccccccccccccchhh
Q psy13357 304 TNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPV 383 (833)
Q Consensus 304 VN~I~T~~GGTHv~gf~~altr~in~y~~~~~l~Kk~k~~l~~~DIregL~avIsvki~nP~FegQTK~kL~n~ev~~~v 383 (833)
||+|+|++|||||+||++||+++|++|+++. |+.+.+++++|||+||++||||+|+||+|+||||++|+|++++..+
T Consensus 295 VN~I~T~~GGTHv~g~~~alt~~i~~~~k~k---kk~~~~i~~~dIregl~~~Vs~~i~nP~FdsQTKekL~~~~~~~~~ 371 (1388)
T PTZ00108 295 VNSICTTKGGTHVNYILDQLISKLQEKAKKK---KKKGKEIKPNQIKNHLWVFVNCLIVNPSFDSQTKETLTTKPSKFGS 371 (1388)
T ss_pred EcccccCCCCCHHHHHHHHHHHHHHHHHHHh---cccCCCCCHHHHHhCcEEEEEEecCCCccCCcccccccChhhHHHH
Confidence 9999999999999999999999999999862 4445789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHhHHhhhcccccccccccccccccC---CCCCCceEEEEeecC
Q psy13357 384 EEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDDIELSTKLADCQ---EKNPELCELYIVEGD 460 (833)
Q Consensus 384 ~~~v~~~l~~~l~~np~~ak~Ii~ki~~~a~ar~aa~kar~~~r~k~~~~~~~lpgKL~dc~---~kd~~~~eLflvEGD 460 (833)
.+++.++|..||+++ .|+++++.+|++|++|+++|++.++| .....++| ||+||+ ++++++|||||||||
T Consensus 372 ~~~v~e~l~~~l~~~-----~Ivekil~~a~aR~aa~~ak~~~~~K-~~~~~~ip-KL~Dc~~aG~k~~~~ceL~lvEGD 444 (1388)
T PTZ00108 372 TCELSEKLIKYVLKS-----PILENIVEWAQAKLAAELNKKMKAGK-KSRILGIP-KLDDANDAGGKNSEECTLILTEGD 444 (1388)
T ss_pred HHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHhhhh-hhcccCch-hhhhcccccCCChhhcEEEEEecC
Confidence 999999999999974 59999999999999999999988877 34444555 999999 689999999999999
Q ss_pred CCccccccc---cCCcceeecccCcccccccccchhHhhccHhHHHHHHHhCCCCCCCCCCcCCCCCCceeeccCCCCCc
Q psy13357 461 SAGGSVKQG---RDRRFQAVLPLRGKVLNIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDG 537 (833)
Q Consensus 461 SAgGsak~g---Rdr~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li~alG~g~~~~~~~~~~LRY~kIiImTDADvDG 537 (833)
||||||+|| |||+||||||||||||||++|+.++|++|+||++|++|||||+|+++||+++||||||||||||||||
T Consensus 445 SAggsAk~Gl~vrdR~~qaVfPLRGKiLNV~kas~~ki~~N~EI~~li~aLGlg~g~~y~d~~~LRYgkIiIMTDADvDG 524 (1388)
T PTZ00108 445 SAKALALAGLSVVGRDYYGVFPLRGKLLNVRDASLKQLMNNKEIQNLFKILGLDIGKKYEDPKGLRYGSLMIMTDQDHDG 524 (1388)
T ss_pred cccchhhhcccccCccceeeeccCCcccccccccHhhhhccHHHHHHHHHhCCCcCccccccccCCCCeEEEEeCCCCCc
Confidence 999999999 79999999999999999999999999999999999999999999666899999999999999999999
Q ss_pred hhHHHHHHHHHHHhcHhhhh-cCcEEEEcCcEEEEEe-CCcceeecCHHHHHHHHHHhhcccceEeecCCCCccChHHHH
Q psy13357 538 AHIRALLLTFFYRKMPKLIE-YGYIYIAQPPLYKIKY-GNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFF 615 (833)
Q Consensus 538 sHI~~Llltff~r~~p~Li~-~G~vyia~pPLykv~~-gk~~~y~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (833)
+|||||||||||||||+||+ .||||+|+||||||++ ||+++||||++|+++|+.+
T Consensus 525 sHIr~LLlnff~~~~p~Li~~~Gfl~~~~tPl~kv~k~gk~~~~fys~~E~e~~~~~----------------------- 581 (1388)
T PTZ00108 525 SHIKGLLINMIHHFWPSLLKNPGFLKEFITPIVKATKKGNQVISFFTIPDFEKWKQT----------------------- 581 (1388)
T ss_pred cHHHHHHHHHHHHhhHHhcccCCEEEEecCCEEEEEECCceeEEecCHHHHHHHHHH-----------------------
Confidence 99999999999999999999 9999999999999999 9999999999999999741
Q ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHhcccCCCCChHHHHHHHHHHHHHhccCCeEEEEEeecccceEEEEEEEeeC
Q psy13357 616 KLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFL 695 (833)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 695 (833)
+
T Consensus 582 ----------------------------------------------------~--------------------------- 582 (1388)
T PTZ00108 582 ----------------------------------------------------V--------------------------- 582 (1388)
T ss_pred ----------------------------------------------------c---------------------------
Confidence 0
Q ss_pred ceeeEEecccccCCHHHHHHHHHHHHHHhhhcCCeEEEcccccccceeeecCHHHHHHHHHHhccCCccceeeccCCCCC
Q psy13357 696 KKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMN 775 (833)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iqRyKGLGEMn 775 (833)
+.++++||||||||||+
T Consensus 583 ---------------------------------------------------------------~~~~~~IkyyKGLGe~~ 599 (1388)
T PTZ00108 583 ---------------------------------------------------------------GLKGWKIKYYKGLGTST 599 (1388)
T ss_pred ---------------------------------------------------------------CCCCCccccccchhhcC
Confidence 01248899999999999
Q ss_pred ccchhhhccCcCceeEEeeeeccHHHHHHHHHHhcCCC-chHHHHHHHHhhh
Q psy13357 776 PGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDN-VELRRKFIELNAL 826 (833)
Q Consensus 776 ~~qLweTtm~P~~R~l~~v~i~da~~a~~~f~~LMG~~-v~~Rr~fI~~~a~ 826 (833)
|+|||||||||+ |.|++|+++|+ .++++|++|||++ +++||+||++|+-
T Consensus 600 ~~e~~eyf~~~~-r~~i~~~~~~~-~~~~~idl~fgk~~a~~RK~wi~~~~~ 649 (1388)
T PTZ00108 600 DKEGKEYFSNID-KHRIRFVYVDD-SDDDSIDLAFSKKRVEDRKEWITNYKG 649 (1388)
T ss_pred HHHHHHHhcccC-ceEEEEecCCc-cHHHHHHHHhCCCChHHHHHHHHhhCc
Confidence 999999999999 99999999988 7999999999987 9999999999984
No 12
>PLN03128 DNA topoisomerase 2; Provisional
Probab=100.00 E-value=2.2e-163 Score=1481.56 Aligned_cols=527 Identities=25% Similarity=0.376 Sum_probs=480.8
Q ss_pred ccCceeccchhhhhhCCCeeeecCCCc--------------------CchhHHHHHHHHHHHhhhc-CCCCCeEEEEEec
Q psy13357 21 ASSIQILEGLEAVRKRPEMYIGDTSDG--------------------TGLHHLVFEILDNAIDESL-AGYCTKINVTIYS 79 (833)
Q Consensus 21 ~~~I~vLeglE~VRkRPgMYIGst~~~--------------------~GL~hlv~EIVdNsiDE~~-aG~~~~I~V~I~~ 79 (833)
++.+|+|+++||||+|||||||||+.. +||||+||||||||+||++ +|+|+.|.|+||+
T Consensus 4 ~~~yqk~s~lEhV~~RP~mYIGS~~~~~~~~wv~~~~~~~~~~v~~vpGL~ki~dEIldNAvDe~~~~g~~~~I~V~i~~ 83 (1135)
T PLN03128 4 EETYQKKTQLEHILLRPDTYIGSTEKHTQTLWVYEGGEMVNREVTYVPGLYKIFDEILVNAADNKQRDPSMDSLKVDIDV 83 (1135)
T ss_pred HHhhhhhcchhHHhcCCCCeeCCCCCccceeeEecccceeeeccccchhHHHHHHHHHHHHHHHhhhcCCCcEEEEEEEc
Confidence 456899999999999999999999974 6999999999999999996 6999999999999
Q ss_pred -CCeEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccceeEEEE--eCC
Q psy13357 80 -DNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTIN--RNK 156 (833)
Q Consensus 80 -DgsIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~~Vev~--r~G 156 (833)
||+|||+||||||||++||+ +|+|+||+|||+||||||||+++|++||||||||+|||||||+||+|+|+ |+|
T Consensus 84 ~dgsIsV~DnGrGIPv~ih~~----~g~~~~ElIft~LhaGgkFdd~~ykvSGGlhGvGasvvNaLS~~f~Vev~d~r~g 159 (1135)
T PLN03128 84 EQNTISVYNNGKGIPVEIHKE----EGVYVPELIFGHLLTSSNFDDNEKKTTGGRNGYGAKLANIFSTEFTVETADGNRG 159 (1135)
T ss_pred CCCeEEEEecCccccCCCCCC----CCCccceEEEEeeccccccCCccceeeccccCCCCeEEEeecCeEEEEEEECCCC
Confidence 79999999999999999998 89999999999999999999999999999999999999999999999999 899
Q ss_pred eEEEEEEEcccccccccccccccccCCceEeccC--CCCccEEEEEeCccccccccccHH---HHHHHHHHhh-ccCCCc
Q psy13357 157 KIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDT--NKQGTKIHFWVDEKIFSNIEFHYE---ILKKRIRELS-FLNNGV 230 (833)
Q Consensus 157 k~y~q~f~~G~~~~~~~~~~~~~~~~~l~~~g~~--~~~GT~V~F~PD~~iF~~~~~~~~---~l~~RlrelA-~LnpGl 230 (833)
+.|+|+|++| .++.++.+++.+ +.+||+|+|+||+++|++..|+++ .+.+|++++| ||||||
T Consensus 160 k~y~q~f~~G------------~~~~~~p~i~~~~~~~~GT~ItF~PD~~iF~~~~fd~d~~~~l~kRl~elAa~Ln~Gl 227 (1135)
T PLN03128 160 KKYKQVFTNN------------MSVKSEPKITSCKASENWTKITFKPDLAKFNMTRLDEDVVALMSKRVYDIAGCLGKKL 227 (1135)
T ss_pred eEEEEEeCCC------------cccCCCceeccCCCCCCceEEEEEECHHHcCCCccChHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999 444444455554 469999999999999998889877 4889999999 999999
Q ss_pred EEEEeecccceEEEEEeCCCcchhhhh-hhcCCCccCCceEEEeeccccccCCceEEEEeeeecCCCcceeEEeecceec
Q psy13357 231 CITLIDERIKKKEIFEFKGGTSGFVSY-INKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQ 309 (833)
Q Consensus 231 ~I~l~der~~~~~~f~~~~Gl~~fv~~-l~~~k~~l~~~~i~~~~e~~~~~~~~i~veval~~~d~~~e~i~SFVN~I~T 309 (833)
+|+|+|+|.. .+|+.+|+++ ++..+.+. +.+++++++ +..||||++|+++ +++++||||||+|
T Consensus 228 kI~Lnder~~-------~~G~~dyv~~~~~~~~~~~-~~~i~~~~~-------~~~~eva~~~s~~-~~~~~SFVN~I~T 291 (1135)
T PLN03128 228 KVELNGKKLP-------VKSFQDYVGLYLGPNSRED-PLPRIYEKV-------NDRWEVCVSLSDG-SFQQVSFVNSIAT 291 (1135)
T ss_pred EEEEecCCCC-------CCCHHHHHHHHhcCCCCCC-CCCeEEEec-------CceEEEEEEEcCC-CceEEEEECcEec
Confidence 9999999843 4799999994 55444333 335666553 2459999999987 5779999999999
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHcccccccCCCCCHHHHhhcceeEEEEeecCCCCCccccccccccccchhhHHHHHH
Q psy13357 310 VDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIK 389 (833)
Q Consensus 310 ~~GGTHv~gf~~altr~in~y~~~~~l~Kk~k~~l~~~DIregL~avIsvki~nP~FegQTK~kL~n~ev~~~v~~~v~~ 389 (833)
++|||||+||+++|++.+++++++.+ | ...+++++|||+||++||||+++||+|+||||++|+|++++.+|++++.+
T Consensus 292 ~~GGTHv~g~~~~i~~~i~~~~~kk~--K-~~~~l~~~diregL~~vIs~ki~nP~FesQTKekL~s~~~~~~v~~~v~e 368 (1135)
T PLN03128 292 IKGGTHVDYVADQIVKHIQEKVKKKN--K-NATHVKPFQIKNHLWVFVNCLIENPTFDSQTKETLTTRPSSFGSKCELSE 368 (1135)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHcc--C-CCCCCCHHHHHhCcEEEEEEecCCCcccCcccccccChhHHHHHHHHHHH
Confidence 99999999999999999999987632 2 13579999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHhHHhhhcccccccccccccccccC---CCCCCceEEEEeecCCCcccc
Q psy13357 390 TLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDDIELSTKLADCQ---EKNPELCELYIVEGDSAGGSV 466 (833)
Q Consensus 390 ~l~~~l~~np~~ak~Ii~ki~~~a~ar~aa~kar~~~r~k~~~~~~~lpgKL~dc~---~kd~~~~eLflvEGDSAgGsa 466 (833)
+|..||+ ++.|+++++.+|+||++|+++|+..++|+. ..++| ||+||+ +++|++|||||||||||||||
T Consensus 369 ~~~~~l~-----~~~Ivekil~~a~aR~aa~~~k~~~~kk~~--~~~ip-KL~Dc~~ag~k~~~~ceLflvEGDSAggsA 440 (1135)
T PLN03128 369 EFLKKVE-----KCGVVENILSWAQFKQQKELKKKDGAKRQR--LTGIP-KLDDANDAGGKKSKDCTLILTEGDSAKALA 440 (1135)
T ss_pred HHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHHhhccCC--CCCCc-ccccccccCCCChhHcEEEEEecCCCCcch
Confidence 9999995 458999999999999999999988777654 23444 999997 899999999999999999999
Q ss_pred ccc---cCCcceeecccCcccccccccchhHhhccHhHHHHHHHhCCCCCCCCC---CcCCCCCCceeeccCCCCCchhH
Q psy13357 467 KQG---RDRRFQAVLPLRGKVLNIEKARFEKIILSEQITTLISTLGIGIEQDEF---NLEKLRYHRIIIMTDADIDGAHI 540 (833)
Q Consensus 467 k~g---Rdr~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li~alG~g~~~~~~---~~~~LRY~kIiImTDADvDGsHI 540 (833)
||| |||+||||||||||||||++|+.+||++|+||++|++|||||+|+ +| |+++|||||||||||||||||||
T Consensus 441 k~Gl~~rdR~~qaIlPLRGKiLNV~ka~~~ki~~N~EI~~li~alG~~~g~-~~~~~d~~~LRYgkIiIMTDaDvDGsHI 519 (1135)
T PLN03128 441 MSGLSVVGRDHYGVFPLRGKLLNVREASHKQIMKNAEITNIKQILGLQFGK-TYDEENTKSLRYGHLMIMTDQDHDGSHI 519 (1135)
T ss_pred hhcccccCccceeeeccCCceeccccCCHHHHhcchHHHHHHHHhCCCcCc-cccccChhhcccCeEEEEeCCCCCcchh
Confidence 999 999999999999999999999999999999999999999999994 56 99999999999999999999999
Q ss_pred HHHHHHHHHHhcHhhhhc-CcEEEEcCcEEEEEeCCcceeecCHHHHHHHHH
Q psy13357 541 RALLLTFFYRKMPKLIEY-GYIYIAQPPLYKIKYGNNECYLRDDIEEERYML 591 (833)
Q Consensus 541 ~~Llltff~r~~p~Li~~-G~vyia~pPLykv~~gk~~~y~~~~~e~~~~~~ 591 (833)
|||||||||||||+||+. ||||+|+||||||++||++.||||++|+++|+.
T Consensus 520 r~LLltff~~~~p~Li~~~G~l~~~~tPl~kv~~gk~~~~~~s~~e~~~~~~ 571 (1135)
T PLN03128 520 KGLIINFFHSFWPSLLKIPGFLVEFITPIVKATKGGKSLSFYTMPEYEAWKE 571 (1135)
T ss_pred HHHHHHHHHHhCHHhhccCCeEEEccCCEEEEEcCCeeEecCCHHHHHHHHH
Confidence 999999999999999997 999999999999999999999999999999974
No 13
>PLN03237 DNA topoisomerase 2; Provisional
Probab=100.00 E-value=1.7e-159 Score=1447.96 Aligned_cols=523 Identities=26% Similarity=0.387 Sum_probs=463.1
Q ss_pred ccCceeccchhhhhhCCCeeeecCCC--------------------cCchhHHHHHHHHHHHhhhc-CCCCCeEEEEEe-
Q psy13357 21 ASSIQILEGLEAVRKRPEMYIGDTSD--------------------GTGLHHLVFEILDNAIDESL-AGYCTKINVTIY- 78 (833)
Q Consensus 21 ~~~I~vLeglE~VRkRPgMYIGst~~--------------------~~GL~hlv~EIVdNsiDE~~-aG~~~~I~V~I~- 78 (833)
++.+|+|+||||||+|||||||||+. .+|||||||||||||+||++ +|+|+.|+|+||
T Consensus 29 ~~~Yqkls~lEhVr~RP~mYIGSt~~~~~~~wv~~~~~m~~~~v~~vpGL~kifdEIldNAvDe~~r~g~~~~I~V~I~~ 108 (1465)
T PLN03237 29 EEMYQKKSQLEHILLRPDTYIGSIEKHTQTLWVYETDKMVQRSVTYVPGLYKIFDEILVNAADNKQRDPKMDSLRVVIDV 108 (1465)
T ss_pred HHhhhccccchHHhcCCCCEeCCCCcccceeeeeccccceeeeccccchhhhhHHHHhhhhHhHHhhcCCCCEEEEEEEc
Confidence 45789999999999999999999993 38999999999999999995 699999999999
Q ss_pred cCCeEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccceeEEEE--eCC
Q psy13357 79 SDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTIN--RNK 156 (833)
Q Consensus 79 ~DgsIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~~Vev~--r~G 156 (833)
.||+|||+||||||||++|++ +|+|+||+|||+||||||||++.|++||||||||+|||||||+||+|+|+ ++|
T Consensus 109 ~~gsIsV~DnGRGIPV~iH~~----eg~~~pElIft~LhAGgkFdd~~yKvSGGlhGVGasvvNaLS~~f~Vev~Dg~~g 184 (1465)
T PLN03237 109 EQNLISVYNNGDGVPVEIHQE----EGVYVPEMIFGHLLTSSNYDDNEKKTTGGRNGYGAKLTNIFSTEFVIETADGKRQ 184 (1465)
T ss_pred CCCEEEEEecCccccCCCCCC----CCCccceEEEEeeeccccCCCCcceeeccccccCccccccccCeeEEEEEECCCC
Confidence 569999999999999999998 99999999999999999999999999999999999999999999999999 568
Q ss_pred eEEEEEEEcccccccccccccccccCCceEeccCCCCccEEEEEeCccccccccccHHHH---HHHHHHhh-ccCCCcEE
Q psy13357 157 KIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEIL---KKRIRELS-FLNNGVCI 232 (833)
Q Consensus 157 k~y~q~f~~G~~~~~~~~~~~~~~~~~l~~~g~~~~~GT~V~F~PD~~iF~~~~~~~~~l---~~RlrelA-~LnpGl~I 232 (833)
+.|+|+|++|| +.+..|+.....+..+||+|+||||++||++..|++++| .+|++++| ||||||+|
T Consensus 185 k~y~Q~f~~nm----------G~~~~p~i~~~~~~~~GT~VtF~PD~eiF~~~~fd~D~l~~~~rRlrdLAa~LnkGlkI 254 (1465)
T PLN03237 185 KKYKQVFSNNM----------GKKSEPVITKCKKSENWTKVTFKPDLAKFNMTHLEDDVVALMKKRVVDIAGCLGKTVKV 254 (1465)
T ss_pred eEEEEEEeCCC----------CccCCceeccCCCCCCceEEEEEECHHHhCCceEcHHHHHHHHHHHHHHHhccCCCcEE
Confidence 99999999953 156666422222347999999999999999889999987 48899999 99999999
Q ss_pred EEeecccceEEEEEeCCCcchhhhh-hhcC---CCccCCceEEEeeccccccCCceEEEEeeeecCCCcceeEEeeccee
Q psy13357 233 TLIDERIKKKEIFEFKGGTSGFVSY-INKS---KLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNIL 308 (833)
Q Consensus 233 ~l~der~~~~~~f~~~~Gl~~fv~~-l~~~---k~~l~~~~i~~~~e~~~~~~~~i~veval~~~d~~~e~i~SFVN~I~ 308 (833)
+|+|+|.+ .+|+.+||++ ++.. +...++ ++ +++ .+..||||++|+++ +++++||||||+
T Consensus 255 ~LndeR~~-------~~G~kdYV~~yl~~~~k~k~~~~~-~i-~e~-------~~~~~EVAl~~sd~-~~~~~SFVNnI~ 317 (1465)
T PLN03237 255 ELNGKRIP-------VKSFSDYVDLYLESANKSRPENLP-RI-YEK-------VNDRWEVCVSLSEG-QFQQVSFVNSIA 317 (1465)
T ss_pred EEEecCCC-------CCCHHHHHHHHhhcccccCCCCCC-cc-Eec-------CCCeEEEEEEEeCC-CceEEEEECccc
Confidence 99999854 3699999995 4321 122332 33 333 34679999999998 488999999999
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHHcccccccCCCCCHHHHhhcceeEEEEeecCCCCCccccccccccccchhhHHHHH
Q psy13357 309 QVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIII 388 (833)
Q Consensus 309 T~~GGTHv~gf~~altr~in~y~~~~~l~Kk~k~~l~~~DIregL~avIsvki~nP~FegQTK~kL~n~ev~~~v~~~v~ 388 (833)
|++|||||+||+++|++.|++|+++ |+++.+++++|||+||++||||+|+||+|+||||++|+|+++. +.
T Consensus 318 T~~GGTHv~g~~~aIt~~l~~~~~k----K~k~~~l~~~DIregL~a~IsvkI~nP~FesQTKekLtn~~~~------f~ 387 (1465)
T PLN03237 318 TIKGGTHVDYVTNQIANHVMEAVNK----KNKNANIKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSS------FG 387 (1465)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHh----ccCCCCCCHHHHHhCcEEEEEEeCCCCccCCcccCcccChHHH------HH
Confidence 9999999999999999999999874 3334689999999999999999999999999999999998753 55
Q ss_pred HHHH---HHHHhCchhhHHHHHHHHHHHHHHHHHHHhHHhhhcccc--cccccccccccccC---CCCCCceEEEEeecC
Q psy13357 389 KTLF---DFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNL--IDDIELSTKLADCQ---EKNPELCELYIVEGD 460 (833)
Q Consensus 389 ~~l~---~~l~~np~~ak~Ii~ki~~~a~ar~aa~kar~~~r~k~~--~~~~~lpgKL~dc~---~kd~~~~eLflvEGD 460 (833)
..+. .|+.. ..++.|+++++.+|++ ++++++.|+|++ ....++| ||+||+ +++|++|||||||||
T Consensus 388 s~l~l~~~flk~--~~~~~Ivekil~~A~a----k~arel~k~k~~k~~~~~~ip-KL~Dc~~aG~kd~~~ceLfLvEGD 460 (1465)
T PLN03237 388 SKCELSEDFLKK--VMKSGIVENLLSWADF----KQSKELKKTDGAKTTRVTGIP-KLEDANEAGGKNSEKCTLILTEGD 460 (1465)
T ss_pred HHhccCHHHHhH--HHHHHHHHHHHHHHHH----HHHHHHHhhhcccccccCCCc-ccccccccccCCccccEEEEEecC
Confidence 5665 77763 4678899999999877 455666666654 3444556 999998 699999999999999
Q ss_pred CCcccccccc---CCcceeecccCcccccccccchhHhhccHhHHHHHHHhCCCCCCCCCCcCCCCCCceeeccCCCCCc
Q psy13357 461 SAGGSVKQGR---DRRFQAVLPLRGKVLNIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDG 537 (833)
Q Consensus 461 SAgGsak~gR---dr~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li~alG~g~~~~~~~~~~LRY~kIiImTDADvDG 537 (833)
|||||||||| ||+||||||||||||||++++.++|++|+||++||+|||||+|+++||+++||||||||||||||||
T Consensus 461 SAgGsAk~GR~vvdR~~qaIlPLRGKILNV~kAs~~kil~N~EI~~ii~aLGlgig~~y~d~~~LRYgkIiIMTDADvDG 540 (1465)
T PLN03237 461 SAKALAVAGLSVVGRNYYGVFPLRGKLLNVREASHKQIMNNAEIENIKQILGLQHGKQYESVKSLRYGHLMIMTDQDHDG 540 (1465)
T ss_pred cCCchhhhhhcccCccceeeeccCCceehhccCcHHhhhcchHHHHHHHHhCCCcCcccCcccccccCcEEEEeCCCCCc
Confidence 9999999999 7999999999999999999999999999999999999999999655799999999999999999999
Q ss_pred hhHHHHHHHHHHHhcHhhhh-cCcEEEEcCcEEEEEe-CCcceeecCHHHHHHHHH
Q psy13357 538 AHIRALLLTFFYRKMPKLIE-YGYIYIAQPPLYKIKY-GNNECYLRDDIEEERYML 591 (833)
Q Consensus 538 sHI~~Llltff~r~~p~Li~-~G~vyia~pPLykv~~-gk~~~y~~~~~e~~~~~~ 591 (833)
||||||||||||||||+||+ .||||+|+||||||++ ||++.||||++|+++|+.
T Consensus 541 sHIrgLLLtFF~r~~P~Li~~~Gfl~~~~tPL~Kv~~~gk~~~~fys~~E~e~w~~ 596 (1465)
T PLN03237 541 SHIKGLLINFIHSFWPSLLKVPSFLVEFITPIVKATRRGKKVLSFYSMPEYEEWKE 596 (1465)
T ss_pred cHHHHHHHHHHHHhhHHhcccCCEEEEecCCeEEEEECCCeeEeecCHHHHHHHHH
Confidence 99999999999999999999 8999999999999999 999999999999999975
No 14
>KOG0355|consensus
Probab=100.00 E-value=3.9e-104 Score=908.44 Aligned_cols=597 Identities=24% Similarity=0.337 Sum_probs=508.3
Q ss_pred ccCceeccchhhhhhCCCeeeecCCCc--------------------CchhHHHHHHHHHHHhhhcCC-CCCeEEEEEec
Q psy13357 21 ASSIQILEGLEAVRKRPEMYIGDTSDG--------------------TGLHHLVFEILDNAIDESLAG-YCTKINVTIYS 79 (833)
Q Consensus 21 ~~~I~vLeglE~VRkRPgMYIGst~~~--------------------~GL~hlv~EIVdNsiDE~~aG-~~~~I~V~I~~ 79 (833)
++.++..+.+||++.||+.||||+++. |||+|+++||++||+| ..++ .++.|.|+||+
T Consensus 5 ~~~yqkks~~ehiL~rPdtyig~ve~~~~~~wv~~~e~~k~~~~t~~pGl~ki~dEilvNaad-k~rd~~m~~i~v~i~~ 83 (842)
T KOG0355|consen 5 EDIYQKKSQLEHILLRPDTYIGSVEPTEQLMWVYDMEKRKMVQRTYVPGLYKIFDEILVNAAD-KQRDPKMNTIKVTIDK 83 (842)
T ss_pred HHHHhhhhhhhhhhcCCcccccccccceeEEeeeccccCceeEeecCCcHHHHHHHHhhcccc-cccCCCcceeEEEEcc
Confidence 356788999999999999999999762 7999999999999999 6654 58899999997
Q ss_pred -CCeEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccceeEEEE--eCC
Q psy13357 80 -DNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTIN--RNK 156 (833)
Q Consensus 80 -DgsIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~~Vev~--r~G 156 (833)
+++|+|+|||+|||++.||. +++|.||++||+|||+|||++++.|++||+||+|++++|+||..|.++|. +.+
T Consensus 84 e~~~isv~nnGkGIPv~~H~~----ek~yvpelifg~Lltssny~d~ekK~tggrngygakLcniFs~~f~~Et~d~~~~ 159 (842)
T KOG0355|consen 84 EKNEISVYNNGKGIPVTIHKV----EKVYVPELIFGNLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFTVETADREYK 159 (842)
T ss_pred CCCEEEEEeCCCcceeeeccc----ccccchHHHHhhhhhccccCCCccccccCCCccceeeeeeccccceeeeeehHhH
Confidence 68999999999999999999 99999999999999999999999999999999999999999999999986 577
Q ss_pred eEEEEEEEcccccccccccccccccCCceEeccCCCCccEEEEEeCccccccccccHHH---HHHHHHHhhccCCCcEEE
Q psy13357 157 KIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEI---LKKRIRELSFLNNGVCIT 233 (833)
Q Consensus 157 k~y~q~f~~G~~~~~~~~~~~~~~~~~l~~~g~~~~~GT~V~F~PD~~iF~~~~~~~~~---l~~RlrelA~LnpGl~I~ 233 (833)
+.|+|+|.+|| ...+++.++...++.||+|+|+||.+.|.+.+++-++ +.+|+.++|....++++.
T Consensus 160 ~~~kQ~w~~nm-----------~~~~~~~i~~~~~~~yTkitF~PDl~~F~m~eLD~Div~l~~rr~~d~a~~~~~vkv~ 228 (842)
T KOG0355|consen 160 MAFKQTWINNM-----------TRDEEPKIVPSTDEDYTKITFSPDLEKFKMKELDDDIVALMARRAYDLAGSVKSVKVE 228 (842)
T ss_pred HHHHHhhhcCC-----------cccCCceeecCCCCCcceEEeCcChHhcCchhhcchHHHhHHhhhhhhcccccceeee
Confidence 89999999996 3445666666667779999999999999999998876 568889999877999999
Q ss_pred EeecccceEEEEEeCCCcchhhhhhhcCCCccC--CceEEEeeccccccCCceEEEEeeeecC-CCcceeEEeecceecc
Q psy13357 234 LIDERIKKKEIFEFKGGTSGFVSYINKSKLVVH--PTIFQAIGNKISEKKNNINIDVSMQWNN-SYNENILCFTNNILQV 310 (833)
Q Consensus 234 l~der~~~~~~f~~~~Gl~~fv~~l~~~k~~l~--~~~i~~~~e~~~~~~~~i~veval~~~d-~~~e~i~SFVN~I~T~ 310 (833)
+++++.+. +|+.+|++.+.. ..... ..+++ +. .+-.||++++-++ +|+ ++||||+|+|.
T Consensus 229 ln~~~~~~-------~~f~~yv~~~~~-~~~~~~~~~~ih---e~-----~~~RwEv~~a~s~~~fq--qisfvNsI~T~ 290 (842)
T KOG0355|consen 229 LNGKNIPV-------KGFYDYVKMYLE-VLWLNDDLKPLH---EV-----LNFRWEVALALSDVGFQ--QVSFVNSIATT 290 (842)
T ss_pred ecCCCCcc-------chHHHHHhhccc-cccccCcchhhh---cc-----cchHHHHhhhccccccc--eeeeecceeec
Confidence 99998642 477888887764 21111 12222 11 2445788887776 454 59999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHcccccccCCCCCHHHHhhcceeEEEEeecCCCCCccccccccccccchhhHHHHHHH
Q psy13357 311 DGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKT 390 (833)
Q Consensus 311 ~GGTHv~gf~~altr~in~y~~~~~l~Kk~k~~l~~~DIregL~avIsvki~nP~FegQTK~kL~n~ev~~~v~~~v~~~ 390 (833)
+||||++++++++++.|+..+++.... .+.++++..|+++|+++|+|.|+||.|+||||+.|+++..+..+.+.+.+.
T Consensus 291 kGGThVd~V~D~iv~~l~~vvkKk~~~--~~~svk~f~vkn~L~vfVN~lIENPtFesQTke~lt~~~~~fgs~~elsek 368 (842)
T KOG0355|consen 291 KGGTHVDYVVDQIVAKLIDVVKKKKVK--KDISVKPFQVKNHLWVFVNCLIENPTFESQTKERLTLRPKRFGSDCELSEK 368 (842)
T ss_pred CCCcccchhhhhHHHHHHHHhcccccc--cccccchhhhhcceEEEEEEEecCccccccchhhcccccccccceEeehhH
Confidence 999999999999999999988764322 246899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCchhhHHHHHHHHHHHHHHHHHHHhHHhhhcccccccccccccccccC---CCCCCceEEEEeecCCCccccc
Q psy13357 391 LFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDDIELSTKLADCQ---EKNPELCELYIVEGDSAGGSVK 467 (833)
Q Consensus 391 l~~~l~~np~~ak~Ii~ki~~~a~ar~aa~kar~~~r~k~~~~~~~lpgKL~dc~---~kd~~~~eLflvEGDSAgGsak 467 (833)
+..++.+++ ....|++.+..+++...+.+++++..+.+ .+| ||-|+. .+.+..|+|+++|||||...|.
T Consensus 369 ~~k~~~~~~-i~esils~s~~~~~~dL~kk~~~~~s~~e------~I~-KleDa~~ag~k~s~kctlIltEgdsaksLav 440 (842)
T KOG0355|consen 369 FTKAIELKG-VVESILSKSLNKYKDDLAKKRGKLTSRSK------GIP-KLEDANDAGTKTSEKCTLILTEGDSAKSLAV 440 (842)
T ss_pred HHHHHHhCc-hHHHHHHHHHHHHHHhhhhhhhhhhcccc------chh-HhhhcccccccccccceeEEeccccchhhee
Confidence 999999998 66666666666555555555555444333 333 666653 3578899999999999976554
Q ss_pred c---ccCCcceeecccCcccccccccchhHhhccHhHHHHHHHhCCCCCCCCCCcCCCCCCceeeccCCCCCchhHHHHH
Q psy13357 468 Q---GRDRRFQAVLPLRGKVLNIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALL 544 (833)
Q Consensus 468 ~---gRdr~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li~alG~g~~~~~~~~~~LRY~kIiImTDADvDGsHI~~Ll 544 (833)
. ..+|++++|||||||+|||++++.+++++|+||++|+.+||+...+.+|+.++|||||+|||||||+|||||++||
T Consensus 441 sGl~vvgRd~~gVfplrgklLNv~e~s~kqilkn~EI~aIikIlgl~~~~~y~~~eslryg~~mimtDQd~dgshikgll 520 (842)
T KOG0355|consen 441 SGLSVVGRDYYGVFPLRGKLLNVREASHKQILKNAEINAIIKILGLQYKKKYFDVESLRYGKLMIMTDQDHDGSHIKGLL 520 (842)
T ss_pred cccccccceeEeecccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhheEeeeccccccchHHHHH
Confidence 4 4569999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred HHHHHHhcHhhhhcCcEEEEcCcEEEEEeCCcceeecCHHHHHHHHHHhhcccceEeecCCCCccChHHHHHHHHHHHHH
Q psy13357 545 LTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKT 624 (833)
Q Consensus 545 ltff~r~~p~Li~~G~vyia~pPLykv~~gk~~~y~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (833)
|||||+|||+|+..+||+.+.||++|+++|++..+|||++|+++|+..
T Consensus 521 Inf~~~~~psl~~~~fleefitpi~k~~~~~~~~~fys~pey~kw~~~-------------------------------- 568 (842)
T KOG0355|consen 521 INFIHHFWPSLLQIPFLEEFITPIVKATKGKQEVSFYSLPEYEKWKKN-------------------------------- 568 (842)
T ss_pred HHHHHHhhHHhhcCCcceecCCcceEeccCCcceeeeccHHHHHHHhc--------------------------------
Confidence 999999999999999999999999999999999999999999999751
Q ss_pred HHHHHHHhcccCHHHHHHHHhcccCCCCChHHHHHHHHHHHHHhccCCeEEEEEeecccceEEEEEEEeeCceeeEEecc
Q psy13357 625 IEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDI 704 (833)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 704 (833)
+
T Consensus 569 -------------------------------------------------------~------------------------ 569 (842)
T KOG0355|consen 569 -------------------------------------------------------T------------------------ 569 (842)
T ss_pred -------------------------------------------------------C------------------------
Confidence 0
Q ss_pred cccCCHHHHHHHHHHHHHHhhhcCCeEEEcccccccceeeecCHHHHHHHHHHhccCCccceeeccCCCCCccchhhhcc
Q psy13357 705 NFINNKDYKKLVSIISTFKKIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTM 784 (833)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iqRyKGLGEMn~~qLweTtm 784 (833)
+ +.+++.|++|||||+|.|+|+||++|
T Consensus 570 ---------------------------------~--------------------~~~~~~ikyykglgts~~~e~keyf~ 596 (842)
T KOG0355|consen 570 ---------------------------------D--------------------NWKSWKIKYYKGLGTSTSKEAKEYFS 596 (842)
T ss_pred ---------------------------------c--------------------cccccceEEeecCCcccHHHHHHHhc
Confidence 0 12347799999999999999999999
Q ss_pred CcCceeEEeeeeccHHHHHHHHHHhcCCCchHHHHHHHHhhh
Q psy13357 785 NPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNAL 826 (833)
Q Consensus 785 ~P~~R~l~~v~i~da~~a~~~f~~LMG~~v~~Rr~fI~~~a~ 826 (833)
|+++++++.....+-+.+.--+...|+ ..+.||+|+.+++.
T Consensus 597 ~~~~h~~~F~~~~~~d~~~i~~af~k~-k~~~rk~wL~~~~~ 637 (842)
T KOG0355|consen 597 DLDRHRILFKYDGGIDDEAIDMAFSKK-KIDARKEWLRKYMP 637 (842)
T ss_pred CcchheEEEeccCcchHHHHhhhcccc-cHHHHHHHHHHHhH
Confidence 999999888877665555555566555 46789999998864
No 15
>cd03366 TOPRIM_TopoIIA_GyrB TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit. TopoIIA enzymes cut both strands of the duplex DNA to remove (relax) both positive and negative supercoils in DNA. These enzymes covalently attach to the 5' ends of the cut DNA, separate the free ends of the cleaved strands, pass another region of the duplex through this gap, then rejoin the ends. These proteins also catenate/ decatenate duplex rings. DNA gyrase is more effective at relaxing supercoils than decatentating DNA. DNA gyrase in addition inserts negative supercoils in the presence of ATP. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in strand joining and as a general acid in strand cleava
Probab=100.00 E-value=9.1e-58 Score=421.13 Aligned_cols=114 Identities=74% Similarity=1.197 Sum_probs=112.8
Q ss_pred eEEEEeecCCCccccccccCCcceeecccCcccccccccchhHhhccHhHHHHHHHhCCCCCCCCCCcCCCCCCceeecc
Q psy13357 452 CELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMT 531 (833)
Q Consensus 452 ~eLflvEGDSAgGsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li~alG~g~~~~~~~~~~LRY~kIiImT 531 (833)
|||||||||||||||||||||+||||||||||||||||++.+|+++|+||++|++|||||++ ++||+++||||||||||
T Consensus 1 ~eL~lvEGDSAggsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~n~Ei~~li~alG~g~~-~~~~~~~lrY~kiiimt 79 (114)
T cd03366 1 SELYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKILKNEEIRALITALGTGIG-EDFDLEKLRYHKIIIMT 79 (114)
T ss_pred CEEEEEeCCCCccccccccCcCceEEeccCCccchHhhccHHHHhcChHHHHHHHHhCCCCC-CCCChhhCCcCeEEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999998 68999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHhcHhhhhcCcEEEEcC
Q psy13357 532 DADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQP 566 (833)
Q Consensus 532 DADvDGsHI~~Llltff~r~~p~Li~~G~vyia~p 566 (833)
||||||+||++|||||||||||+||++||||+|+|
T Consensus 80 DaD~DG~hI~~Llltff~~~~p~Li~~G~vyia~p 114 (114)
T cd03366 80 DADVDGAHIRTLLLTFFFRYMRPLIENGHVYIAQP 114 (114)
T ss_pred CCCCCchHHHHHHHHHHHHHhHHHHhCCeEEEecC
Confidence 99999999999999999999999999999999998
No 16
>cd01030 TOPRIM_TopoIIA_like TOPRIM_TopoIIA_like: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II. TopoIIA enzymes cut both strands of the duplex DNA to remove (relax) both positive and negative supercoils in DNA. These enzymes covalently attach to the 5' ends of the cut DNA, separate the free ends of the cleaved strands, pass another region of the duplex through this gap, then rejoin the ends. These proteins also catenate/ decatenate duplex rings. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in strand joining and as a general acid in strand cleavage by topisomerases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=100.00 E-value=2.2e-56 Score=414.06 Aligned_cols=115 Identities=67% Similarity=1.145 Sum_probs=113.6
Q ss_pred eEEEEeecCCCccccccccCCcceeecccCcccccccccchhHhhccHhHHHHHHHhCCCCCCCCCCcCCCCCCceeecc
Q psy13357 452 CELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMT 531 (833)
Q Consensus 452 ~eLflvEGDSAgGsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li~alG~g~~~~~~~~~~LRY~kIiImT 531 (833)
|||||||||||||||||||||.||||||||||||||||++.+|+++|+||.+|++||||++++++||+++||||||||||
T Consensus 1 ~eL~lvEGDSA~gsak~gR~~~~qailPLrGKiLNv~ka~~~k~~~n~Ei~~l~~alG~~~~~~~~~~~~lrY~kiiimt 80 (115)
T cd01030 1 CELILVEGDSAGGSAKQGRDRVFQAVFPLRGKILNVEKASLKKILKNEEIQNIIKALGLGIGKDDFDLDKLRYGKIIIMT 80 (115)
T ss_pred CEEEEEecCCcchhhhhhcCcccEEEeccCCeeccHhcCCHHHHhcChHHHHHHHHhCCCCCcccCChhhcCcCeEEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999778999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHhcHhhhhcCcEEEEcC
Q psy13357 532 DADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQP 566 (833)
Q Consensus 532 DADvDGsHI~~Llltff~r~~p~Li~~G~vyia~p 566 (833)
|||+||+||++|||||||||||+||++||||+|+|
T Consensus 81 DaD~DG~hI~~Llltff~~~~p~Li~~G~v~~~~~ 115 (115)
T cd01030 81 DADVDGSHIRTLLLTFFYRFWPSLLENGFLYIAQT 115 (115)
T ss_pred CCCCCccHhHHHHHHHHHHHhhHhhhCCEEEEeeC
Confidence 99999999999999999999999999999999997
No 17
>cd03365 TOPRIM_TopoIIA TOPRIM_TopoIIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II. TopoIIA enzymes cut both strands of the duplex DNA to remove (relax) both positive and negative supercoils in DNA. These enzymes covalently attach to the 5' ends of the cut DNA, separate the free ends of the cleaved strands, pass another region of the duplex through this gap, then rejoin the ends. These proteins also catenate/ decatenate duplex rings. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in strand joining and as a general acid in strand cleavage by topisomerases. The DXD motif may co-ordinate Mg2+, a cofact
Probab=100.00 E-value=7e-53 Score=393.02 Aligned_cols=115 Identities=37% Similarity=0.637 Sum_probs=110.5
Q ss_pred eEEEEeecCCCcccccccc---CCcceeecccCcccccccccchhHhhccHhHHHHHHHhCCCCCC-CCCCcCCCCCCce
Q psy13357 452 CELYIVEGDSAGGSVKQGR---DRRFQAVLPLRGKVLNIEKARFEKIILSEQITTLISTLGIGIEQ-DEFNLEKLRYHRI 527 (833)
Q Consensus 452 ~eLflvEGDSAgGsak~gR---dr~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li~alG~g~~~-~~~~~~~LRY~kI 527 (833)
||||||||||||||||||| ||+||||||||||||||+|++.+|+++|+||++|++|||||++. ++||+++|||+||
T Consensus 1 ~eLflvEGDSA~gsak~gr~~~dr~~qailPLrGKiLNv~ka~~~ki~~n~Ei~~li~alG~g~~~~~~~~~~~lrY~ki 80 (120)
T cd03365 1 CTLILTEGDSAKALAVAGLSVVGRDYYGVFPLRGKLLNVREASHKQIMENAEIQNIKKILGLQHGKSDYESTKSLRYGRL 80 (120)
T ss_pred CEEEEEeCCCchhhHHhhhccCCCceEEEeccCCccchhhcCCHHHHhcCHHHHHHHHHhCCCCCcccccccccCCcCeE
Confidence 8999999999999999999 89999999999999999999999999999999999999999985 3599999999999
Q ss_pred eeccCCCCCchhHHHHHHHHHHHhcHhhhhc-CcEEEEcC
Q psy13357 528 IIMTDADIDGAHIRALLLTFFYRKMPKLIEY-GYIYIAQP 566 (833)
Q Consensus 528 iImTDADvDGsHI~~Llltff~r~~p~Li~~-G~vyia~p 566 (833)
|||||||+||+||++|||||||||||+||++ |||+.+.|
T Consensus 81 iimtDaD~DG~hI~~Llltff~r~~p~Li~~~~fi~~~~t 120 (120)
T cd03365 81 MIMTDQDHDGSHIKGLLINFIHSFWPSLLKIPGFLVEFIT 120 (120)
T ss_pred EEEeCCCCCccHHHHHHHHHHHHHhHHHhcCCCHHHHhcC
Confidence 9999999999999999999999999999997 99987654
No 18
>cd00822 TopoII_Trans_DNA_gyrase TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E. coli DNA gyrase and E. coli Topoisomerase IV which are heterodimers composed of two subunits. The type IIA enzymes are the predominant form of topoisomerase and are found in some bacteriophages, viruses and archaea, and in all bacteria and eukaryotes. All type IIA topoisomerases are related to each other at amino acid sequence level, though their oligomeric organization sometimes differs. TopoIIA enzymes cut both strands of the duplex DNA to remove (relax) both positive and negative supercoils in DNA. These enzymes covalently attach to the 5' ends of the cut DNA, separate the free ends of the cleaved strands, pass another region of the duplex through this gap, then rejoin the ends. TopoIIA enzymes also catenate/ decatenate duplex rings. E.coli DNA gyrase is a
Probab=100.00 E-value=8.5e-42 Score=342.85 Aligned_cols=172 Identities=51% Similarity=0.812 Sum_probs=164.3
Q ss_pred CCcchhhhhhhcCCCccCCceEEEeeccccccCCceEEEEeeeecCCCcceeEEeecceeccCCcchHHHHHHHHHHHHH
Q psy13357 249 GGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAIN 328 (833)
Q Consensus 249 ~Gl~~fv~~l~~~k~~l~~~~i~~~~e~~~~~~~~i~veval~~~d~~~e~i~SFVN~I~T~~GGTHv~gf~~altr~in 328 (833)
+||.+|+++++.+++++||+|++++++. +++.||||++|+++|+++++||||+|+|++||||++||+++|+++|+
T Consensus 1 gGl~~fl~~l~~~~~~l~~~~i~~~~~~-----~~~~veva~~~~~~~~~~~~sfvN~i~T~~GGTH~~g~~~~l~~~i~ 75 (172)
T cd00822 1 GGLKDFVEELNKDKEPLHEEPIYIEGEK-----DGVEVEVALQWTDSYSENILSFVNNIPTPEGGTHETGFRAALTRAIN 75 (172)
T ss_pred CCHHHHHHHHhCCCCcCCCCCeEEEEEe-----cceEEEEEEEEeCCCCeEEEEeECcccCCCCCCHHHHHHHHHHHHHH
Confidence 5999999999998888988899998875 67899999999999999999999999999999999999999999999
Q ss_pred HHHHHcccccccCCCCCHHHHhhcceeEEEEeecCCCCCccccccccccccchhhHHHHHHHHHHHHHhCchhhHHHHHH
Q psy13357 329 KYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEK 408 (833)
Q Consensus 329 ~y~~~~~l~Kk~k~~l~~~DIregL~avIsvki~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~ak~Ii~k 408 (833)
.|+++.+++|+.+.+++++||++||++||||++++|+|+||||++|+|++++++|+++|.+.|..||++||..|+.|+++
T Consensus 76 ~~~~~~~~~k~~~~~~~~~di~~~l~~vvsv~~~~P~F~gQTK~kL~~~~v~~~v~~~v~~~l~~~l~~n~~~a~~i~~k 155 (172)
T cd00822 76 DYAKKNNLLKKKDVKLTGDDIREGLTAVISVKVPEPQFEGQTKDKLGNSEVRSIVESAVREALEEWLEENPEEAKKILEK 155 (172)
T ss_pred HHHHHhCcccccCCCCCHHHHHhCcEEEEEEEcCCCccCCcccccccCHhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
Confidence 99999998887667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHh
Q psy13357 409 IIEAARSREAARKTREL 425 (833)
Q Consensus 409 i~~~a~ar~aa~kar~~ 425 (833)
++.++++|++|+++|++
T Consensus 156 ~~~~~~aR~aa~~ar~~ 172 (172)
T cd00822 156 AILAAKAREAARKAREL 172 (172)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 99999999999999863
No 19
>PF00204 DNA_gyraseB: DNA gyrase B; InterPro: IPR013506 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions, domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents the second domain found in subunit B (gyrB and parE) of bacterial gyrase and topoisomerase IV, and the equivalent N-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 3LPS_A 3LNU_A 1KIJ_B 1EI1_B 1S16_B 1QZR_B 1PVG_A 3CWV_B 1ZXN_A 1ZXM_B ....
Probab=100.00 E-value=4.2e-39 Score=323.73 Aligned_cols=173 Identities=43% Similarity=0.713 Sum_probs=155.4
Q ss_pred CcchhhhhhhcCCCccCCceEEEeeccccccCCceEEEEeeeecCCCcceeEEeecceeccCCcchHHHHHHHHHHHHHH
Q psy13357 250 GTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINK 329 (833)
Q Consensus 250 Gl~~fv~~l~~~k~~l~~~~i~~~~e~~~~~~~~i~veval~~~d~~~e~i~SFVN~I~T~~GGTHv~gf~~altr~in~ 329 (833)
|+.+|+++++.++.++|++++++.++... .+.+.|++|++|++++.+.++||||+|+|++||||++||+++|+++|++
T Consensus 1 G~~dyv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~va~~~~~~~~~~~~SfvN~i~T~~GGtHv~g~~~~i~~~i~~ 78 (173)
T PF00204_consen 1 GFKDYVKLLNKDKEPLHPEPIYFEGEDKE--NDRWEVEVAFQWTSGYDEKIVSFVNNIPTPEGGTHVDGFKDAITKAIND 78 (173)
T ss_dssp SHHHHHHHHCTTS-BSSSSEEEEEEEEE---TTTEEEEEEEEEBSSSSCEEEEEETTEE-TTEBHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCcCCCCCeEEEEEecc--CCcEEEEEEEEecCCCceeeeeeeccccccccccHHHHHHHHHHHHHHH
Confidence 78999999999888999999999876410 0239999999999888889999999999999999999999999999999
Q ss_pred HHHHcccccccCCCCCHHHHhhcceeEEEEeecCCCCCccccccccccccchhhHHHHHHHHHHHHHhCchhhHHHHHHH
Q psy13357 330 YIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKI 409 (833)
Q Consensus 330 y~~~~~l~Kk~k~~l~~~DIregL~avIsvki~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~ak~Ii~ki 409 (833)
|+++.+++|++. +++++||++||++||||+++||+|+||||++|+|++++..|..++.+.|..||++||+.++.|++++
T Consensus 79 ~~~k~~~~k~~~-~i~~~di~~~l~~vv~~~i~nP~F~gQTK~~L~~~~~~~~v~~~v~~~l~~~l~~n~~~~~~i~~~~ 157 (173)
T PF00204_consen 79 YAKKKNKLKKKD-KITPEDIREGLTAVVSVKIPNPQFEGQTKEKLTNPEVRSIVEKAVSEKLEKWLEKNPEIAKAIIEKA 157 (173)
T ss_dssp HHHHTTCCCTTT-GSSHHHHHTTEEEEEEEEESSG-BSSTTTTSB--HHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHH
T ss_pred hHhhhCcccccc-ccchhhcccccEEEEEEEEecccccccccceeeHHHhhhhhhhhhHHHHHHHHHHCHHHHHHHHHHH
Confidence 999998887765 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHh
Q psy13357 410 IEAARSREAARKTREL 425 (833)
Q Consensus 410 ~~~a~ar~aa~kar~~ 425 (833)
+.++++|++|++||++
T Consensus 158 ~~~~~~r~~ak~are~ 173 (173)
T PF00204_consen 158 LQAAKAREAAKKARET 173 (173)
T ss_dssp HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999999974
No 20
>PF00986 DNA_gyraseB_C: DNA gyrase B subunit, carboxyl terminus The Prosite motif does not match this Pfam entry.; InterPro: IPR002288 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions, domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents the C-terminal region (C-terminal part of domain 2) of subunit B found in topoisomerase II (gyrB) and topoisomerase IV (parE), which are primarily of bacterial origin. It does not include the topoisomerase II enzymes composed of a single polypeptide, as are found in most eukaryotes. This region is involved in subunit interaction, which accounts for the difference between subunit B and single polypeptide topoisomerase II. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 3LTN_D 3RAF_C 3FOF_C 3RAE_C 3KSA_D 3RAD_C 3FOE_D 3KSB_D 3K9F_D 2XCT_D ....
Probab=99.98 E-value=2.4e-33 Score=234.72 Aligned_cols=63 Identities=62% Similarity=0.964 Sum_probs=60.2
Q ss_pred cCCccceeeccCCCCCccchhhhccCcCceeEEeeeeccHHHHHHHHHHhcCCCchHHHHHHH
Q psy13357 760 ENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIE 822 (833)
Q Consensus 760 ~~~~~iqRyKGLGEMn~~qLweTtm~P~~R~l~~v~i~da~~a~~~f~~LMG~~v~~Rr~fI~ 822 (833)
+++++||||||||||||+|||||||||++|+|+||+|+|+.+|+++|++|||++|+|||+||+
T Consensus 3 ~~~~~I~RfKGLGEM~p~qL~eTTmdP~~R~L~~V~i~d~~~~~~~~~~LMG~~v~~Rr~fIe 65 (65)
T PF00986_consen 3 KKKVEIQRFKGLGEMNPDQLWETTMDPETRRLIRVTIEDAEEADELFEMLMGKNVEPRREFIE 65 (65)
T ss_dssp TTTTEEEESSSGGGS-HHHHHHHHTSTTTTEEEEEEHCCHHHHHHHHHHHHSSTHHHHHHHHH
T ss_pred CCCceeEEecccccCCHHHHHHHccCccceEEEEEEECCHHHHHHHHHHHcCCCcHHHHHHhC
Confidence 456999999999999999999999999999999999999999999999999999999999997
No 21
>cd03481 TopoIIA_Trans_ScTopoIIA TopoIIA_Trans_ScTopoIIA: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topo IIA. S. cerevisiae Topo IIA is a homodimer encoded by a single gene. The type IIA enzymes are the predominant form of topoisomerase and are found in some bacteriophages, viruses and archaea, and in all bacteria and eukaryotes. All type IIA topoisomerases are related to each other at amino acid sequence level, though their oligomeric organization sometimes differs. TopoIIA enzymes cut both strands of the duplex DNA to remove (relax) both positive and negative supercoils in DNA. These enzymes covalently attach to the 5' ends of the cut DNA, separate the free ends of the cleaved strands, pass another region of the duplex through this gap, then rejoin the ends. TopoIIA enzymes also catenate/ decatenate duplex rings. This transducer domain is homologous to t
Probab=99.96 E-value=5.2e-29 Score=245.27 Aligned_cols=121 Identities=19% Similarity=0.305 Sum_probs=108.9
Q ss_pred EEEEeeeecCCCcceeEEeecceeccCCcchHHHHHHHHHHHHHHHHHHcccccccCCCCCHHHHhhcceeEEEEeecCC
Q psy13357 285 NIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDP 364 (833)
Q Consensus 285 ~veval~~~d~~~e~i~SFVN~I~T~~GGTHv~gf~~altr~in~y~~~~~l~Kk~k~~l~~~DIregL~avIsvki~nP 364 (833)
.||||++|+++ +++++||||+|+|++||||++||+++|+++|++|+++.+ | .+.+++++|||+||++||+|+++||
T Consensus 32 ~veva~~~s~~-~~~~~SFvN~I~T~~GGTHv~g~~~~lt~~i~~~~~kk~--k-~~~~i~~~dire~l~~vvs~~i~~P 107 (153)
T cd03481 32 RWEVAVALSDG-QFQQVSFVNSIATTKGGTHVDYVADQIVKKLDEVVKKKN--K-GGINVKPFQVKNHLWIFVNCLIENP 107 (153)
T ss_pred cEEEEEEEcCC-CcEEEEEECCcCCCCCCchHHHHHHHHHHHHHHHHHHcC--C-CCCCcCHHHHhcCeEEEEEEecCCC
Confidence 59999999986 788999999999999999999999999999999998754 3 2468999999999999999999999
Q ss_pred CCCccccccccccccchhhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Q psy13357 365 KFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAAR 414 (833)
Q Consensus 365 ~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~ak~Ii~ki~~~a~ 414 (833)
+|+||||++|+|++........+.+.|..|+.++ .|+++++.+|+
T Consensus 108 ~FegQTK~kL~s~~~~~~~~~~~~~~~~~~~~k~-----~ii~~i~~~a~ 152 (153)
T cd03481 108 SFDSQTKETLTTKPKSFGSKCELSEKFLKKAVKS-----GIVESVLSWAK 152 (153)
T ss_pred ccCCcccccccCcccccccccccCHHHHHHHHHc-----hHHHHHHHHHc
Confidence 9999999999999865555558899999999987 78999988764
No 22
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.92 E-value=6.8e-24 Score=251.08 Aligned_cols=303 Identities=18% Similarity=0.250 Sum_probs=212.3
Q ss_pred ceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC--eEEEEECCCCcccccccCCC
Q psy13357 24 IQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYSDN--SISISDNGRGIPIDIKIDDK 101 (833)
Q Consensus 24 I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg--sIsV~DnGrGIPv~~h~~~~ 101 (833)
|+.|+.--.-+-+.|-.| ..+..+|+|+|+||+| || |+.|.|+++.+| +|+|.|||+|||.+..+.
T Consensus 3 I~~L~~~v~~~IaAgevI------~~~~svvkElveNsiD---Ag-at~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~-- 70 (617)
T PRK00095 3 IQLLPPQLANQIAAGEVV------ERPASVVKELVENALD---AG-ATRIDIEIEEGGLKLIRVRDNGCGISKEDLAL-- 70 (617)
T ss_pred ceECCHHHHHHhcCcCcc------cCHHHHHHHHHHHHHh---CC-CCEEEEEEEeCCeEEEEEEEcCCCCCHHHHHH--
Confidence 555554444444444443 5799999999999999 45 999999999888 899999999999987653
Q ss_pred CCCCCcceeeeeeeccccCCCCC--Ccce-ecCCcccccchhhhhcccceeEEEEeC--CeEEEEEEEcccccccccccc
Q psy13357 102 HKPKRSAAEIVMTELHAGGKFNK--NSYK-ISGGLHGIGLSCVNGLSRFLQLTINRN--KKIHYMEFRYGVLQNRIIKTI 176 (833)
Q Consensus 102 ~~~~~~~~E~Vft~LhAGgKFdd--~~yk-vSgGlhGvG~svvNAlS~~~~Vev~r~--Gk~y~q~f~~G~~~~~~~~~~ 176 (833)
++ ..|++||+.. +.|. .|.|++|.|+++++++| +++|+++++ +..|++.|++|
T Consensus 71 ----------~~-~~~~tsKi~~~~dl~~~~t~GfrGeAL~sI~~vs-~l~i~s~~~~~~~~~~~~~~~G---------- 128 (617)
T PRK00095 71 ----------AL-ARHATSKIASLDDLEAIRTLGFRGEALPSIASVS-RLTLTSRTADAAEGWQIVYEGG---------- 128 (617)
T ss_pred ----------Hh-hccCCCCCCChhHhhccccCCcchhHHHhhhhce-EEEEEEecCCCCceEEEEecCC----------
Confidence 55 4899999976 3454 68999999999999999 799999986 56899999999
Q ss_pred cccccCCceEeccCCCCccEEEEE------eCccccc-cccccHHHHHHHHHHhhccCCCcEEEEeecccceEEEEEeCC
Q psy13357 177 NGISVSPIKIIGDTNKQGTKIHFW------VDEKIFS-NIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKG 249 (833)
Q Consensus 177 ~~~~~~~l~~~g~~~~~GT~V~F~------PD~~iF~-~~~~~~~~l~~RlrelA~LnpGl~I~l~der~~~~~~f~~~~ 249 (833)
.+.. ......++||+|+|+ |++.+|. ....++..|.++++++|++||+++|.|.++. +..|++++
T Consensus 129 --~~~~---~~~~~~~~GT~V~v~~LF~n~P~Rrkflk~~~~e~~~i~~~v~~~Al~~p~i~f~l~~~~---~~~~~~~~ 200 (617)
T PRK00095 129 --EIVE---VKPAAHPVGTTIEVRDLFFNTPARRKFLKSEKTELGHIDDVVNRLALAHPDVAFTLTHNG---KLVLQTRG 200 (617)
T ss_pred --cCcc---eecccCCCCCEEEechhhccCcHHHHhccCcHHHHHHHHHHHHHHhhcCCCcEEEEEECC---EEEEEeCC
Confidence 3321 122235799999997 9999995 4567888999999999999999999999875 35688874
Q ss_pred --CcchhhhhhhcCCCccCCceEEEeeccccccCCceEEE--Eee-eecCCCcceeEEeecceeccCCcchHHHHHHHHH
Q psy13357 250 --GTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINID--VSM-QWNNSYNENILCFTNNILQVDGGTHLTGLRSGIT 324 (833)
Q Consensus 250 --Gl~~fv~~l~~~k~~l~~~~i~~~~e~~~~~~~~i~ve--val-~~~d~~~e~i~SFVN~I~T~~GGTHv~gf~~alt 324 (833)
++.+++..+- +.... +..+.+..+. +++.++ ++. .|+.+....++.|||+.++..- .|.
T Consensus 201 ~~~~~~~i~~i~-g~~~~-~~l~~~~~~~-----~~~~i~g~is~p~~~~~~~~~~~~fvN~R~v~~~---------~l~ 264 (617)
T PRK00095 201 AGQLLQRLAAIL-GREFA-ENALPIDAEH-----GDLRLSGYVGLPTLSRANRDYQYLFVNGRYVRDK---------LLN 264 (617)
T ss_pred CCCHHHHHHHHh-CHHhH-hheEEEeccC-----CCEEEEEEEeCcccccCCCcceEEEECCcEecCH---------HHH
Confidence 4666665553 22222 3455665544 567777 444 4555656678999999998742 344
Q ss_pred HHHHHHHHHcccccccCCCCCHHHHhhcceeEEEEeecCCCCC---ccccccccccccchhhHHHHHHHHHHHHHh
Q psy13357 325 RAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFN---SQTKNKLVSSEVRKPVEEIIIKTLFDFLQE 397 (833)
Q Consensus 325 r~in~y~~~~~l~Kk~k~~l~~~DIregL~avIsvki~nP~Fe---gQTK~kL~n~ev~~~v~~~v~~~l~~~l~~ 397 (833)
++|++.-+. +..+.. .=.+|+++.+|.-.+| ..+|...--.. ...+...+.+.+..+|.+
T Consensus 265 ~ai~~~y~~--~~~~~~----------~P~~~l~i~~~~~~~DvNvhP~K~ev~f~~-e~~i~~~i~~~i~~~l~~ 327 (617)
T PRK00095 265 HAIRQAYHD--LLPRGR----------YPAFVLFLELDPHQVDVNVHPAKHEVRFRD-ERLVHDLIVQAIQEALAQ 327 (617)
T ss_pred HHHHHHHHH--hccCCC----------CcEEEEEEEeChHhcccccCCCcCEEEeCC-HHHHHHHHHHHHHHHHhc
Confidence 444433322 112111 1278899998766565 34454433222 234445555666666643
No 23
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.88 E-value=1.4e-22 Score=230.82 Aligned_cols=282 Identities=20% Similarity=0.252 Sum_probs=210.1
Q ss_pred CceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhc-CCCCCeEEEEEecC--C--eEEEEECCCCcccccc
Q psy13357 23 SIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESL-AGYCTKINVTIYSD--N--SISISDNGRGIPIDIK 97 (833)
Q Consensus 23 ~I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~-aG~~~~I~V~I~~D--g--sIsV~DnGrGIPv~~h 97 (833)
+.+.++..|..+|++.|- |..++.++|.++++|+|+||+|++. .|....|.|.+... + .|+|.|||+|||.+..
T Consensus 3 ~~~~~s~aEFF~kN~~~~-Gf~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl 81 (488)
T TIGR01052 3 KFREMSVAEFFRKNKHML-GYSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYI 81 (488)
T ss_pred cccccCHHHHHHhCCccc-cccCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCceEEEEEEECCCCCCHHHH
Confidence 346788899999999997 9999878999999999999999986 46677899998752 2 6999999999999988
Q ss_pred cCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccc-----eeEEEEeCCeE--EEEEEE------
Q psy13357 98 IDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRF-----LQLTINRNKKI--HYMEFR------ 164 (833)
Q Consensus 98 ~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~-----~~Vev~r~Gk~--y~q~f~------ 164 (833)
+. +|+.+|+|+||... ..+.|++|+|+++++++|+. ++|+++++|.. |+++|.
T Consensus 82 ~~------------iF~rf~~tsK~~~~--~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n 147 (488)
T TIGR01052 82 PK------------VFGKMLAGSKFHRI--IQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKN 147 (488)
T ss_pred Hh------------hhhhccccCccccc--cccCCCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEeccccc
Confidence 75 89999999999743 57889999999999999986 88988888864 588885
Q ss_pred cccccccccccccccccCCceEeccCCCCccEEEEEeCccccccccccHHHHHHHHHHhhccCCCcEEEEeecccceEEE
Q psy13357 165 YGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEI 244 (833)
Q Consensus 165 ~G~~~~~~~~~~~~~~~~~l~~~g~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~RlrelA~LnpGl~I~l~der~~~~~~ 244 (833)
.| ....... .+...++||+|+++|+.... .+....+.++|+++|++||+++|+|.++.. +.
T Consensus 148 ~G------------~i~~~~~-~~~~~~~GT~V~v~f~~~~~---r~~k~~i~e~l~~~Al~nP~~~i~l~~~~~---~~ 208 (488)
T TIGR01052 148 EG------------EIVEKGE-WNKPGWRGTRIELEFKGVSY---RRSKQGVYEYLRRTAVANPHAKIVLVDPDG---EI 208 (488)
T ss_pred CC------------eecceee-cCCCCCCceEEEEEECCcee---eccHHHHHHHHHHHHhhCCCeEEEEEeCCC---CE
Confidence 34 3333322 23333589999999655432 234578999999999999999999999763 34
Q ss_pred EEeCCCcchhhhhhhcCCCccCCceEEEeeccccccCCceEEEEeeeecC-CCcceeEEeecceeccCCcchHHHHHHHH
Q psy13357 245 FEFKGGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNN-SYNENILCFTNNILQVDGGTHLTGLRSGI 323 (833)
Q Consensus 245 f~~~~Gl~~fv~~l~~~k~~l~~~~i~~~~e~~~~~~~~i~veval~~~d-~~~e~i~SFVN~I~T~~GGTHv~gf~~al 323 (833)
+.|+.- ...+++.|..+++ ||.|++++...+.-. +-..++.+|..+-++.-|..+.+
T Consensus 209 ~~f~R~-----------~~~~P~~p~e~kp-----HP~gv~~~~l~~m~~~t~~~~l~~fL~~~f~~v~~~~a~------ 266 (488)
T TIGR01052 209 YVFPRS-----------TDEIPKPPKEMKP-----HPHGVTIDDLKSMARSTRASTLRSFLVSEFSRIGEKKIK------ 266 (488)
T ss_pred EEeecc-----------cccCCCCCccCCC-----CCCccCHHHHHHHHHhcCcccHHHHHHHhhcccCHHHHH------
Confidence 666642 2234455555555 558877665443321 11235889999988888865443
Q ss_pred HHHHHHHHHHcccc----cccCCCCCHHHHhhcceeEEEEeecCCC
Q psy13357 324 TRAINKYIEENEFL----KKSKIEIIGEDIREGLTCVLSIKIPDPK 365 (833)
Q Consensus 324 tr~in~y~~~~~l~----Kk~k~~l~~~DIregL~avIsvki~nP~ 365 (833)
++++..|+. .+...+++.+++..-+-++-+.++..|.
T Consensus 267 -----~~~~~~g~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~P~ 307 (488)
T TIGR01052 267 -----ELLEKYGIDVDPLDKKPKELTWDEAEKIVNAFKEMKFMAPP 307 (488)
T ss_pred -----HHHHHhCCCccccCCChhhCCHHHHHHHHHHHHhcCCCCCC
Confidence 333443433 2233578999999999998888888775
No 24
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.86 E-value=1.9e-22 Score=221.58 Aligned_cols=285 Identities=19% Similarity=0.225 Sum_probs=202.9
Q ss_pred CceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhc-CCCCCeEEEEEecCC----eEEEEECCCCcccccc
Q psy13357 23 SIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESL-AGYCTKINVTIYSDN----SISISDNGRGIPIDIK 97 (833)
Q Consensus 23 ~I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~-aG~~~~I~V~I~~Dg----sIsV~DnGrGIPv~~h 97 (833)
..+.++..|..||++.|- |.+++.++|...|+|+|+||+|++. +|..+.|.|.|..-| .|.|.|||+|||.+..
T Consensus 11 ~~re~SvAEFF~kNk~ml-Gf~~p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~I 89 (538)
T COG1389 11 KFRELSVAEFFRKNKEML-GFDGPIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQI 89 (538)
T ss_pred hhhhcCHHHHHHhCHHhc-CCCCchhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecCCceEEEEEecCCCCCChhHh
Confidence 367889999999999998 9999999999999999999999998 899999999998743 7999999999999999
Q ss_pred cCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccce-----eEEEEeC--CeEEEEEEEcccccc
Q psy13357 98 IDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFL-----QLTINRN--KKIHYMEFRYGVLQN 170 (833)
Q Consensus 98 ~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~-----~Vev~r~--Gk~y~q~f~~G~~~~ 170 (833)
|+ |||++++||||+ ..++|.|+.|+|+|.+-.+|+.. +|.+... +..|.+...-+.
T Consensus 90 Pk------------vFGk~LygSKfh--~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~--- 152 (538)
T COG1389 90 PK------------VFGKMLYGSKFH--RNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDV--- 152 (538)
T ss_pred HH------------HHHHHhccchhh--hhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecC---
Confidence 97 999999999997 56899999999999999999876 4555443 567777766551
Q ss_pred ccccccccccc--CCceEeccCCCCccEEEEEeCcccccccccc--HHHHHHHHHHhhccCCCcEEEEeecccceEEEEE
Q psy13357 171 RIIKTINGISV--SPIKIIGDTNKQGTKIHFWVDEKIFSNIEFH--YEILKKRIRELSFLNNGVCITLIDERIKKKEIFE 246 (833)
Q Consensus 171 ~~~~~~~~~~~--~~l~~~g~~~~~GT~V~F~PD~~iF~~~~~~--~~~l~~RlrelA~LnpGl~I~l~der~~~~~~f~ 246 (833)
++|+|. ..-.......++||+|+.. |....+. ..-+.++|+++|..||+.+|.|.|+.. +.+.
T Consensus 153 -----~kNEp~Iv~r~~~~~~~~~hGT~Vel~-----~~~~~~~~~~qgi~eYlkrtaiinPhA~I~l~dPdG---~~~v 219 (538)
T COG1389 153 -----QKNEPEIVERGEVENPGGWHGTRVELE-----LKGVWYRAKRQGIYEYLKRTAIINPHARIVLKDPDG---NLVV 219 (538)
T ss_pred -----CCCcchhhhcccccCCCCCCceEEEEE-----ecccchhhcccCHHHHHHHHhhcCCceEEEEECCCC---cEEE
Confidence 122321 1111111235799999988 4432222 223889999999999999999999875 3344
Q ss_pred eCCCcchhhhhhhcCCCccCCceEEEeeccccccCCceEEEEeee---ecCCCcceeEEeecceeccCCcchHHHHHHHH
Q psy13357 247 FKGGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQ---WNNSYNENILCFTNNILQVDGGTHLTGLRSGI 323 (833)
Q Consensus 247 ~~~Gl~~fv~~l~~~k~~l~~~~i~~~~e~~~~~~~~i~veval~---~~d~~~e~i~SFVN~I~T~~GGTHv~gf~~al 323 (833)
|+. ....+++.|-.+++ ||.|++++-.++ .++. .++.+|.-+-++.-|
T Consensus 220 f~r-----------~t~~lP~pP~E~kP-----HP~gvd~~~L~~M~~~T~~--~tv~~fL~sef~rig----------- 270 (538)
T COG1389 220 FPR-----------STDKLPKPPKEIKP-----HPHGVDLDTLKKMAHRTRR--STVREFLVSEFSRIG----------- 270 (538)
T ss_pred ecc-----------chhhCCCCccccCC-----CCccccHHHHHHHHHHhhh--hhHHHHHHHHHHHhh-----------
Confidence 543 12234444555544 557776554332 2233 235666666666555
Q ss_pred HHHHHHHHHHcccccccC-CCCC----HHHHhhcceeEEEEeecCCCCC
Q psy13357 324 TRAINKYIEENEFLKKSK-IEII----GEDIREGLTCVLSIKIPDPKFN 367 (833)
Q Consensus 324 tr~in~y~~~~~l~Kk~k-~~l~----~~DIregL~avIsvki~nP~Fe 367 (833)
.+++.++++..++....+ ..++ +++...-+-||-++++..|.=+
T Consensus 271 ~~ta~e~~e~~g~~~~~~p~~L~~~~~~eea~~lv~a~~~~~fm~Pptd 319 (538)
T COG1389 271 EKTADELLEYAGFDPDKKPRELTKKKTREEAEKLVEAFKKMKFMAPPTD 319 (538)
T ss_pred hhhHHHHHHHhcCCcccCHHHhhcccCHHHHHHHHHHHHhCcccCCCcc
Confidence 344556666655433222 1233 7777777777777777666533
No 25
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.82 E-value=4.7e-20 Score=212.32 Aligned_cols=304 Identities=18% Similarity=0.243 Sum_probs=216.3
Q ss_pred ceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhc-CCCCCeEEEEEecC----C--eEEEEECCCCccccc
Q psy13357 24 IQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESL-AGYCTKINVTIYSD----N--SISISDNGRGIPIDI 96 (833)
Q Consensus 24 I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~-aG~~~~I~V~I~~D----g--sIsV~DnGrGIPv~~ 96 (833)
.+.++..|..+|++.|. |..++.++|.+++.|+|+||+|++- .|....|.|.+..+ + .|+|.|||+|||.+.
T Consensus 12 ~~~~s~aEfF~kn~~~~-gf~~p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~ 90 (535)
T PRK04184 12 FREISVAEFFEKNKELL-GFDNPARALYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEE 90 (535)
T ss_pred hhhCCHHHHHHhCccce-eecCCHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHH
Confidence 67889999999999998 8877768999999999999999985 46667899988742 2 689999999999988
Q ss_pred ccCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccc-----eeEEEEeCCe--EEEEEEEccccc
Q psy13357 97 KIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRF-----LQLTINRNKK--IHYMEFRYGVLQ 169 (833)
Q Consensus 97 h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~-----~~Vev~r~Gk--~y~q~f~~G~~~ 169 (833)
.+. +|+.+++++||... ..+.|.+|+|+++++.+|+. +.|++..++. .|++++.-....
T Consensus 91 l~~------------iF~~f~~~SK~~~~--~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~k 156 (535)
T PRK04184 91 IPK------------VFGKLLYGSKFHNL--RQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKK 156 (535)
T ss_pred HHH------------Hhhhhhcccccccc--ccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEecccc
Confidence 875 89999999998642 45778999999999999985 5677776543 688887532000
Q ss_pred ccccccccccccCCceEeccCCCCccEEEEEeCccccccccccHHHHHHHHHHhhccCCCcEEEEeecccceEEEEEeCC
Q psy13357 170 NRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKG 249 (833)
Q Consensus 170 ~~~~~~~~~~~~~~l~~~g~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~RlrelA~LnpGl~I~l~der~~~~~~f~~~~ 249 (833)
| .+..... ........+||+|++.++...+. ....+.++++++|++||+++|+|.+... +.+.|+.
T Consensus 157 n------~g~i~~~-~~~~~~~~~GT~V~V~l~~~~~~----~~~~I~e~i~r~Al~nP~~~~~l~~~~g---~~~~f~R 222 (535)
T PRK04184 157 N------EPIILER-EEVDWDRWHGTRVELEIEGDWYR----AKQRIYEYLKRTAIVNPHARITFKDPDG---EILVFPR 222 (535)
T ss_pred c------CCeeccc-cccCCCCCCCEEEEEEECCcChh----hHHHHHHHHHHHHHhCCCeEEEEEeCCC---eEEEEec
Confidence 0 0011111 11122457999999997765552 3788999999999999999999998653 3366654
Q ss_pred CcchhhhhhhcCCCccCCceEEEeeccccccCCceEEEEeeeecC-CCcceeEEeecceeccCCcchHHHHHHHHHHHHH
Q psy13357 250 GTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNN-SYNENILCFTNNILQVDGGTHLTGLRSGITRAIN 328 (833)
Q Consensus 250 Gl~~fv~~l~~~k~~l~~~~i~~~~e~~~~~~~~i~veval~~~d-~~~e~i~SFVN~I~T~~GGTHv~gf~~altr~in 328 (833)
- ...+++.|..+++ ||.|++++...+... +-..++.+|..+-++.-|..+ ..
T Consensus 223 ~-----------~~~~P~~p~e~kp-----HP~gv~~~~l~~m~~~t~~~~l~~fL~~~f~~v~~~~-----------a~ 275 (535)
T PRK04184 223 A-----------TDKLPKPPKEIKP-----HPHGVDLGTLKRMAARTKRRTLKEFLVEEFSRVGDKT-----------AD 275 (535)
T ss_pred c-----------cccCCCCCccCCC-----CCCccCHHHHHHHHHhcccCCHHHHHHHhhcccCHHH-----------HH
Confidence 2 2234445555554 558877665544321 112468899999999888554 44
Q ss_pred HHHHHccccccc-CCCCCHHHHhhcceeEEEEeecCCCCCccccccccccccchhhHHHHHHHHHH
Q psy13357 329 KYIEENEFLKKS-KIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFD 393 (833)
Q Consensus 329 ~y~~~~~l~Kk~-k~~l~~~DIregL~avIsvki~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~ 393 (833)
++++..++..+. ..+++.+++..-+-++-++++..|.=+ . +.++-+..+...|..
T Consensus 276 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~pp~~-----~-----lspige~~i~~gl~~ 331 (535)
T PRK04184 276 EILEKAGLDPNKKPKELTREELERLVEAFKKYKFMAPPTA-----C-----LSPIGEELIEKGLKK 331 (535)
T ss_pred HHHHHcCCCCCCChhhCCHHHHHHHHHHHHhccCcCCCCc-----c-----CCCCCHHHHHHHHHH
Confidence 555666764333 357999999999999999988877522 2 344555555555554
No 26
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=7.7e-16 Score=168.89 Aligned_cols=275 Identities=18% Similarity=0.191 Sum_probs=177.4
Q ss_pred ceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC--eEEEEECCCCcccccccCCC
Q psy13357 24 IQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYSDN--SISISDNGRGIPIDIKIDDK 101 (833)
Q Consensus 24 I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg--sIsV~DnGrGIPv~~h~~~~ 101 (833)
|+.|+.--.=+-+.+-.| ..+..++.|+|+||+|+. ++.|.|.+..++ +|+|.|||.|||.+..+.
T Consensus 3 I~~l~~~~~~~i~s~~~i------~~~~~~l~eLi~Na~dA~----a~~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~-- 70 (312)
T TIGR00585 3 IKPLPPELVNKIAAGEVI------ERPASVVKELVENSLDAG----ATRIDVEIEEGGLKLIEVSDNGSGIDKEDLPL-- 70 (312)
T ss_pred CeECCHHHHHHHhCcCch------hhHHHHHHHHHHHHHHCC----CCEEEEEEEeCCEEEEEEEecCCCCCHHHHHH--
Confidence 555555333333444333 568999999999999964 689999998776 599999999999886553
Q ss_pred CCCCCcceeeeeeeccccCCCCCC---cceecCCcccccchhhhhcccceeEEEEe---CCeEEEEEEEccccccccccc
Q psy13357 102 HKPKRSAAEIVMTELHAGGKFNKN---SYKISGGLHGIGLSCVNGLSRFLQLTINR---NKKIHYMEFRYGVLQNRIIKT 175 (833)
Q Consensus 102 ~~~~~~~~E~Vft~LhAGgKFdd~---~ykvSgGlhGvG~svvNAlS~~~~Vev~r---~Gk~y~q~f~~G~~~~~~~~~ 175 (833)
+ +..|+++|+.+. ....+-|++|+|++.++++| +++|+++. ++..|++. .+|
T Consensus 71 ----------~-~~~~~tsk~~~~~~~~~~~~~G~rG~al~si~~~s-~~~i~S~~~~~~~~~~~~~-~~g--------- 128 (312)
T TIGR00585 71 ----------A-CERHATSKIQSFEDLERIETLGFRGEALASISSVS-RLTITTKTSAADGLAWQAL-LEG--------- 128 (312)
T ss_pred ----------H-hhCCCcCCCCChhHhhcccccCccchHHHHHHhhC-cEEEEEeecCCCcceEEEE-ECC---------
Confidence 4 367788887642 34578899999999999999 79999875 33567776 556
Q ss_pred ccccccCCceEeccCCCCccEEEEE------eCccccc-cccccHHHHHHHHHHhhccCCCcEEEEeecccceEEEEEeC
Q psy13357 176 INGISVSPIKIIGDTNKQGTKIHFW------VDEKIFS-NIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFK 248 (833)
Q Consensus 176 ~~~~~~~~l~~~g~~~~~GT~V~F~------PD~~iF~-~~~~~~~~l~~RlrelA~LnpGl~I~l~der~~~~~~f~~~ 248 (833)
....+. .+...++||+|++. |++..|. .....++.+.++++.+|.++|+++|.|.+.. + ..+.+.
T Consensus 129 ---~~~~~~--~~~~~~~GTtV~v~~lf~n~p~r~~~~~~~~~~~~~i~~~l~~~al~~p~i~f~l~~~~--~-~~~~~~ 200 (312)
T TIGR00585 129 ---GMIEEI--KPAPRPVGTTVEVRDLFYNLPVRRKFLKSPKKEFRKILDLLNRYALIHPDVSFSLTHDG--K-KVLQLS 200 (312)
T ss_pred ---CcCccc--ccccCCCccEEEEchhhccCchhhhhccCcHHHHHHHHHHHHHHhhcCCCeEEEEEECC--E-EEEEEc
Confidence 322222 23345799999999 9998875 3455678899999999999999999999873 2 233333
Q ss_pred -CCcchhhhh-hhc--CCCccCCceEEEe-eccccccCCceEEEEeeeec---CCCcce-eEEeecceeccCCcchHHHH
Q psy13357 249 -GGTSGFVSY-INK--SKLVVHPTIFQAI-GNKISEKKNNINIDVSMQWN---NSYNEN-ILCFTNNILQVDGGTHLTGL 319 (833)
Q Consensus 249 -~Gl~~fv~~-l~~--~k~~l~~~~i~~~-~e~~~~~~~~i~veval~~~---d~~~e~-i~SFVN~I~T~~GGTHv~gf 319 (833)
++-.+..+. +.. +.. +....+.+. .+. .++.++.-+... .+.... ++-|||+.+-..-
T Consensus 201 ~~~~~~~~~~~i~~v~G~~-~~~~l~~~~~~~~-----~~~~v~G~is~p~~~~~~~~~~q~ifvNgR~v~~~------- 267 (312)
T TIGR00585 201 TKPNQSLKERRIRSVFGTA-VLSKLFPLLEWED-----GDLQLEGFISEPNVTRSRRSGWQFLFINGRPVELK------- 267 (312)
T ss_pred CCCCCCHHHHHHHHHhChH-hHhhceeeecccC-----CCEEEEEEEcCcccccCCCCcceEEEECCcEecch-------
Confidence 232233331 211 111 111223333 122 456666544322 122223 7999999886532
Q ss_pred HHHHHHHHHHHHHHcccccccCCCCCHHHHhhcceeEEEEeecCCCCC
Q psy13357 320 RSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFN 367 (833)
Q Consensus 320 ~~altr~in~y~~~~~l~Kk~k~~l~~~DIregL~avIsvki~nP~Fe 367 (833)
.|.++|++.-+... .+. ..-.+++++.+|.-..|
T Consensus 268 --~l~k~I~~~y~~~~--~~~----------~~P~~vL~i~~p~~~iD 301 (312)
T TIGR00585 268 --LLLKAIREVYHEYL--PKG----------QYPVFVLNLEIDPELVD 301 (312)
T ss_pred --HHHHHHHHHHHHhc--cCC----------CCcEEEEEEEEChHHcc
Confidence 24555655443321 111 12388899998866555
No 27
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.64 E-value=6.3e-16 Score=181.38 Aligned_cols=191 Identities=26% Similarity=0.307 Sum_probs=140.4
Q ss_pred cCceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhc-CCCCCeEEEEEecCC----eEEEEECCCCccccc
Q psy13357 22 SSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESL-AGYCTKINVTIYSDN----SISISDNGRGIPIDI 96 (833)
Q Consensus 22 ~~I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~-aG~~~~I~V~I~~Dg----sIsV~DnGrGIPv~~ 96 (833)
++.+.++..|..+|++.|+ |..+..++|.+++.|+|+||+|++. .|....|.|.+..++ .|+|.|||+|||.+.
T Consensus 10 ~~~~~~S~aEFF~kNk~~l-Gf~~~~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~ 88 (659)
T PRK14867 10 DEFKEHSISEFFRKNKHML-GYSGKLRSMTTIIHELVTNSLDACEEAEILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEF 88 (659)
T ss_pred HHHHHhHHHHHHhhCCeee-echhHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCcEEEEEEEeeCeeCCHHH
Confidence 3456778889999999998 8877767899999999999999986 456678999998643 499999999999988
Q ss_pred ccCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccce-----eEEEEe-CCeEEEEEEEcccccc
Q psy13357 97 KIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFL-----QLTINR-NKKIHYMEFRYGVLQN 170 (833)
Q Consensus 97 h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~-----~Vev~r-~Gk~y~q~f~~G~~~~ 170 (833)
.+. +|..+|+|+||.. +..|.|.+|+|++++.++|+.+ .++++. +|..|.+.+.-...
T Consensus 89 l~~------------iFerF~atSK~~~--~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~i~-- 152 (659)
T PRK14867 89 VPK------------VFGKMLAGSKMHR--LIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMSVE-- 152 (659)
T ss_pred Hhh------------hhccccccCcccc--eeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEEec--
Confidence 775 9999999999963 5689999999999999999875 566654 56666666544200
Q ss_pred cccccccccccCCceEeccCCCCccEEEEEeCccccccccccHHHHHHHHHHhhccCCCcEEEEeecc
Q psy13357 171 RIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDER 238 (833)
Q Consensus 171 ~~~~~~~~~~~~~l~~~g~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~RlrelA~LnpGl~I~l~der 238 (833)
++.+..... + .....++||+|+|.-. ..|-+.. .. .+.++++++|..||+++|.|.+..
T Consensus 153 ----~n~G~I~~~-~-~~~~~~~GT~Ie~~V~-dLFynR~-E~-~i~e~l~r~ALanP~i~f~l~~~~ 211 (659)
T PRK14867 153 ----KNEGDIVSH-K-VREGFWRGTRVEGEFK-EVTYNRR-EQ-GPFEYLRRISLSTPHAKITLKDPE 211 (659)
T ss_pred ----ccCCeeccc-c-cCCCCCCCcEEEEEEe-eceechh-hH-HHHHHHHHHHHhCCCcEEEEEeCC
Confidence 000022111 0 1223478999995210 1221211 11 289999999999999999999874
No 28
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.56 E-value=6.6e-14 Score=166.28 Aligned_cols=291 Identities=15% Similarity=0.227 Sum_probs=184.3
Q ss_pred CchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC--eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCC
Q psy13357 48 TGLHHLVFEILDNAIDESLAGYCTKINVTIYSDN--SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKN 125 (833)
Q Consensus 48 ~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg--sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~ 125 (833)
..+..+|+|+|+||||+. |++|.|.+...| +|.|.|||.||+.+..+ +...-||+||..+.
T Consensus 22 erPaSVVKELVENSlDAG----At~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~-------------la~~rHaTSKI~~~ 84 (638)
T COG0323 22 ERPASVVKELVENSLDAG----ATRIDIEVEGGGLKLIRVRDNGSGIDKEDLP-------------LALLRHATSKIASL 84 (638)
T ss_pred ecHHHHHHHHHhcccccC----CCEEEEEEccCCccEEEEEECCCCCCHHHHH-------------HHHhhhccccCCch
Confidence 468999999999999997 999999999887 69999999999998776 34579999997664
Q ss_pred c---ceecCCcccccchhhhhcccceeEEEEeCC-e-EEEEEEEcccccccccccccccccCCceEeccCCCCccEEEEE
Q psy13357 126 S---YKISGGLHGIGLSCVNGLSRFLQLTINRNK-K-IHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFW 200 (833)
Q Consensus 126 ~---ykvSgGlhGvG~svvNAlS~~~~Vev~r~G-k-~y~q~f~~G~~~~~~~~~~~~~~~~~l~~~g~~~~~GT~V~F~ 200 (833)
. -..|-|+.|..++.+..+| +++++++..+ . .|++..+.|. ..+ .+.+...+.||+|+..
T Consensus 85 ~DL~~I~TlGFRGEAL~SIasVs-rlti~Srt~~~~~~~~~~~~g~~-----------~~~---~~~p~a~~~GTtVeV~ 149 (638)
T COG0323 85 EDLFRIRTLGFRGEALASIASVS-RLTITSRTAEASEGTQIYAEGGG-----------MEV---TVKPAAHPVGTTVEVR 149 (638)
T ss_pred hHHHHhhccCccHHHHHHHHhhh-eeEEEeecCCcCceEEEEecCCc-----------ccc---cccCCCCCCCCEEEeh
Confidence 3 3679999999999999999 8999888543 3 4555556552 111 1223345669999976
Q ss_pred ------eCccccc-cccccHHHHHHHHHHhhccCCCcEEEEeecccceEEEEEeCC-C-cchhhhhhhcCCCccCCceEE
Q psy13357 201 ------VDEKIFS-NIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKG-G-TSGFVSYINKSKLVVHPTIFQ 271 (833)
Q Consensus 201 ------PD~~iF~-~~~~~~~~l~~RlrelA~LnpGl~I~l~der~~~~~~f~~~~-G-l~~fv~~l~~~k~~l~~~~i~ 271 (833)
|-+..|. +..-++..|.+.++++|..+|.+.++|........+....++ | ...-+..+.... .....+.
T Consensus 150 dLF~NtPaRrKflks~~~E~~~i~~vv~r~ALahp~I~F~l~~~gk~~~~~~~~~~~~~~~~ri~~i~G~~--~~~~~l~ 227 (638)
T COG0323 150 DLFYNTPARRKFLKSEKTEFGHITELINRYALAHPDISFSLSHNGKLRIELLKLPGTGDLEERIAAVYGTE--FLKNALP 227 (638)
T ss_pred HhhccChHHHHhhcccHHHHHHHHHHHHHHHhcCCCeEEEEEECCceeeEEEecCCCCcHHHHHHHHhCHH--HHHhhcc
Confidence 7777775 445678889999999999999999999886421112222221 1 222233332111 0012233
Q ss_pred EeeccccccCCceEEEEee---eecCCCcceeEEeecceeccCCcchHHHHHHHHHHHHHHHHHHcccccccCCCCCHHH
Q psy13357 272 AIGNKISEKKNNINIDVSM---QWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGED 348 (833)
Q Consensus 272 ~~~e~~~~~~~~i~veval---~~~d~~~e~i~SFVN~I~T~~GGTHv~gf~~altr~in~y~~~~~l~Kk~k~~l~~~D 348 (833)
++.+. .++.+..-+ .++.+-...++.|||+.+-.+- .|.++|.+--. .++....
T Consensus 228 i~~~~-----~~~~l~G~v~~P~~~r~~~~~q~~fVNgR~V~~~---------~l~~Ai~~aY~--~~L~~~r------- 284 (638)
T COG0323 228 IENEH-----EDLRLSGYVSLPEFTRASRDYQYLFVNGRPVRDK---------LLNHALREAYA--DYLPRGR------- 284 (638)
T ss_pred cccCC-----CceEEEEEecccccccCCccceEEEECCCEeccH---------HHHHHHHHHHH--hhccCCC-------
Confidence 33332 344432211 2233445678999999997765 33444433221 1122111
Q ss_pred HhhcceeEEEEeecCCCCC---ccccccccccccchhhHHHHHHHHHHHHHhCc
Q psy13357 349 IREGLTCVLSIKIPDPKFN---SQTKNKLVSSEVRKPVEEIIIKTLFDFLQENP 399 (833)
Q Consensus 349 IregL~avIsvki~nP~Fe---gQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np 399 (833)
.-++|+.+.++.-.-| -.+|...-=.. ...|...+.+.+..+|.+..
T Consensus 285 ---~P~~vL~l~l~p~~vDVNVHP~K~EVrf~~-~~~i~~~I~~~I~~~L~~~~ 334 (638)
T COG0323 285 ---YPVFVLFLELDPELVDVNVHPAKKEVRFSD-ERLVHDLIYEAIKEALAQQG 334 (638)
T ss_pred ---CcEEEEEEeeChhhcccccCCCcceEEecC-HHHHHHHHHHHHHHHHHhcc
Confidence 2378888887643222 34443321111 13455666667777776654
No 29
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.55 E-value=1.6e-14 Score=169.94 Aligned_cols=252 Identities=20% Similarity=0.227 Sum_probs=177.1
Q ss_pred cCceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcC-CCCCeEEEEEecCC---eEEEEECCCCcccccc
Q psy13357 22 SSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLA-GYCTKINVTIYSDN---SISISDNGRGIPIDIK 97 (833)
Q Consensus 22 ~~I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~a-G~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h 97 (833)
++.+.++.-|.+.+++.|. |...+.+.|..++.|+|+||+|.+.. |....|.|.+..++ .|+|.|||.|||.+..
T Consensus 20 ~~~~~iS~aEfF~kN~~~l-gfD~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdL 98 (795)
T PRK14868 20 ESQREISIAEFFEKNKHML-GFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEEVGDYYRLVVEDNGPGITKEQI 98 (795)
T ss_pred hhccccceeeecccCccee-eccCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEECCCEEEEEEEEcCCCCCHHHH
Confidence 3557788889999999888 65554478999999999999998753 33347888887654 5899999999999877
Q ss_pred cCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccc-----eeEEEEeCC--eE--EEEEEEcccc
Q psy13357 98 IDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRF-----LQLTINRNK--KI--HYMEFRYGVL 168 (833)
Q Consensus 98 ~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~-----~~Vev~r~G--k~--y~q~f~~G~~ 168 (833)
+. +|..++.++||... ..+.|..|.|++++-++|+. +.|+++..+ .. |.+....|
T Consensus 99 p~------------IFerf~~tSKf~~~--~~srG~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~g-- 162 (795)
T PRK14868 99 PK------------VFGKLLYGSRFHAR--EQSRGQQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTD-- 162 (795)
T ss_pred HH------------Hhhhhccccccccc--ccCCCCCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecC--
Confidence 75 89888889998642 35778899999999999975 678877544 23 35555555
Q ss_pred ccccccccccccc-CCceEeccCCCCccEEEEEeCccccccccccHHHHHHHHHHhhccCCCcEEEEeecccceEEEEEe
Q psy13357 169 QNRIIKTINGISV-SPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEF 247 (833)
Q Consensus 169 ~~~~~~~~~~~~~-~~l~~~g~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~RlrelA~LnpGl~I~l~der~~~~~~f~~ 247 (833)
++.|. ...........+||+|+.. +|.+.. ....+.++++.+|..||.++|.|.+.+ +.|+|
T Consensus 163 --------kNep~I~~~~~~~~~~~~GT~IeV~----Lf~N~p-AR~kI~eyl~r~Al~nP~a~f~l~~~~----~~~~~ 225 (795)
T PRK14868 163 --------TNEPEISVEETTTWDRPHGTRIELE----MEANMR-ARQQLHDYIKHTAVVNPHARIELREPD----ESLKF 225 (795)
T ss_pred --------CCccceecceecccCCCCceEEEEE----EEccCc-hhhhHHHHHHHHHhhCCCeEEEEEECC----EEEEe
Confidence 11221 0011112235799999997 576542 245599999999999999999999983 45888
Q ss_pred CCCcchhhhhhhcCCCccCCceEEEeeccccccCCceEEEEeeeecC-CCcceeEEeecceeccCCcchHHHHHHHH
Q psy13357 248 KGGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNN-SYNENILCFTNNILQVDGGTHLTGLRSGI 323 (833)
Q Consensus 248 ~~Gl~~fv~~l~~~k~~l~~~~i~~~~e~~~~~~~~i~veval~~~d-~~~e~i~SFVN~I~T~~GGTHv~gf~~al 323 (833)
+.+..+ +++.|..+++ ||.|+.++-.+.... .-..++.+|++.-.+.-|..+.+-+.+.+
T Consensus 226 ~r~t~~-----------lp~~p~eIkP-----HP~Gve~~~L~~m~~~t~~~~l~gFL~~efsRVg~k~a~~ii~~~ 286 (795)
T PRK14868 226 ERATDQ-----------LPAETEEIRP-----HPHGVELGTLLKMLEATDSYSVSGFLQEEFTRVGKKTADSVIDNF 286 (795)
T ss_pred cccccc-----------cccCchhccC-----CCCCcCHHHHHHHHhccCCcEeHHhhhhhhccccHHHHHHHHHHH
Confidence 765321 3333444444 446665533332221 11246899999999999988888776544
No 30
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=99.08 E-value=1.2e-11 Score=148.54 Aligned_cols=79 Identities=11% Similarity=0.069 Sum_probs=68.8
Q ss_pred eEEEcccccccceeeecCHHHHHHHHHHhcc--------CCccceeeccCCCCCccchh-hhccCcCceeEEeeeeccHH
Q psy13357 730 VIIQKSIGEKIKKYTANNFYKIINYLRNEAE--------NMVIKQRYKGLGEMNPGQLW-ETTMNPMIRCLLKVKIKDAI 800 (833)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~iqRyKGLGEMn~~qLw-eTtm~P~~R~l~~v~i~da~ 800 (833)
+++.+| . +...+.|-.|+-+|+.+.+. .+..||| ||||||||+||| ||||||.+|+|+||.++|+.
T Consensus 536 ykv~~g--k--~~~y~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 610 (756)
T PRK14939 536 YKVKKG--K--QEQYLKDDEALDDYLIELALEGATLHLADGPAISG-EALEKLVKEYRAVRKIIDRLERRYPRAVLEALI 610 (756)
T ss_pred EEEecC--C--eeEecCCHHHHHHHHHHhCcCCceeecCCCCcccH-HHHHHHHHHHHHHHHHHhHHhccccHHHHHHHH
Confidence 666654 3 45568889999999998753 3578999 999999999999 99999999999999999999
Q ss_pred HHHHHHHHhcCCC
Q psy13357 801 SADKIFMTLMGDN 813 (833)
Q Consensus 801 ~a~~~f~~LMG~~ 813 (833)
+|+.+|+.|||+.
T Consensus 611 ~~~~~~~~~~~~~ 623 (756)
T PRK14939 611 YAPALDLDDLADE 623 (756)
T ss_pred hccccchhhhcch
Confidence 9999999999954
No 31
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=99.07 E-value=1.3e-10 Score=106.75 Aligned_cols=98 Identities=26% Similarity=0.309 Sum_probs=87.7
Q ss_pred EEEEeecCCCccccccccCCcceeecccCcccccccccchhH-hhccHhHHHHHHHhCCCCCCCCCCcCCCCCCceeecc
Q psy13357 453 ELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEK-IILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMT 531 (833)
Q Consensus 453 eLflvEGDSAgGsak~gRdr~~qailPLrGKiLNv~ka~~~k-i~~N~Ei~~li~alG~g~~~~~~~~~~LRY~kIiImT 531 (833)
+|+||||+|+..+..++.+.....|+|+.|+++|....+... ..+++.++.|.+.+ .+|+.|||+|
T Consensus 1 ~liIvE~ps~a~~i~~~l~~~~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~-------------~~~~~iiiat 67 (100)
T PF01751_consen 1 ELIIVEKPSDAKAIAKALGGEEYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLL-------------KKADEIIIAT 67 (100)
T ss_dssp EEEEESSHHHHHHHHHHSSTTTEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHH-------------HSCSEEEEEC
T ss_pred CEEEEeCHHHHHHHHHHcCCCCEEEEEeCCcccccccccccccccccccchhhHHHh-------------hhccEeeecC
Confidence 699999999999999999988899999999999999876655 78889999999988 4689999999
Q ss_pred CCCCCchhHHHHHHHHHHHhcHhhhhcCcEEEEc
Q psy13357 532 DADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQ 565 (833)
Q Consensus 532 DADvDGsHI~~Llltff~r~~p~Li~~G~vyia~ 565 (833)
|+|.+|.||...++.++...+|.+ .+++|+-.
T Consensus 68 D~D~EGe~Ia~~i~~~~~~~~~~~--~~R~~~~~ 99 (100)
T PF01751_consen 68 DPDREGELIAWEIIELLGKNNPKL--IKRVWFSS 99 (100)
T ss_dssp -SSHHHHHHHHHHHHHHHHHSHHH--TTEEEEES
T ss_pred CCChHHHHHHHHHHHHHhHhCCCc--CCEEEEec
Confidence 999999999999999999999999 77777643
No 32
>KOG1978|consensus
Probab=98.88 E-value=3.5e-09 Score=123.02 Aligned_cols=175 Identities=23% Similarity=0.271 Sum_probs=125.0
Q ss_pred CchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC--eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCC---C
Q psy13357 48 TGLHHLVFEILDNAIDESLAGYCTKINVTIYSDN--SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGK---F 122 (833)
Q Consensus 48 ~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg--sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgK---F 122 (833)
.+|...|+|+||||||+. |+.|.|.+..-| +|+|.|||.||.....+ .++.-|..+| |
T Consensus 19 ~sl~sAVKELvENSiDAG----AT~I~I~~kdyG~d~IEV~DNG~GI~~~n~~-------------~l~lkh~TSKi~~f 81 (672)
T KOG1978|consen 19 TSLVSAVKELVENSIDAG----ATAIDIKVKDYGSDSIEVSDNGSGISATDFE-------------GLALKHTTSKIVSF 81 (672)
T ss_pred ccHHHHHHHHHhcCcccC----CceeeEecCCCCcceEEEecCCCCCCccchh-------------hhhhhhhhhcccch
Confidence 578999999999999997 999999998766 89999999999866443 4778888888 6
Q ss_pred CCCcceecCCcccccchhhhhcccceeEEEEeC-CeEEEEEEEcccccccccccccccccCCceEeccCCCCccEEEEE-
Q psy13357 123 NKNSYKISGGLHGIGLSCVNGLSRFLQLTINRN-KKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFW- 200 (833)
Q Consensus 123 dd~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~-Gk~y~q~f~~G~~~~~~~~~~~~~~~~~l~~~g~~~~~GT~V~F~- 200 (833)
.|-.-..|-|++|..+|...|+|.-+..+.+.+ -...+..|.+-. ... .....+...||+|...
T Consensus 82 ~Dl~~l~T~GFRGEALSsLCa~~dv~I~Trt~~~~vgt~l~~Dh~G-----------~I~---~k~~~ar~~GTTV~v~~ 147 (672)
T KOG1978|consen 82 ADLAVLFTLGFRGEALSSLCALGDVMISTRSHSAKVGTRLVYDHDG-----------HII---QKKPVARGRGTTVMVRQ 147 (672)
T ss_pred hhhhhhhhhhhHHHHHHhhhhccceEEEEeeccCccceeEEEccCC-----------cee---eeccccCCCCCEEEHhh
Confidence 666678899999999999999997666665433 344666665430 121 2233457899999965
Q ss_pred -----eCc-cccc-cccccHHHHHHHHHHhhccCCCcEEEEeeccc-ceEEEEEeCCCcch
Q psy13357 201 -----VDE-KIFS-NIEFHYEILKKRIRELSFLNNGVCITLIDERI-KKKEIFEFKGGTSG 253 (833)
Q Consensus 201 -----PD~-~iF~-~~~~~~~~l~~RlrelA~LnpGl~I~l~der~-~~~~~f~~~~Gl~~ 253 (833)
|=+ .-|. +.+=.++.+..-++.+|.+++++++.....-. +++..-.-.+|-.+
T Consensus 148 LF~tLPVR~kef~r~~Kref~k~i~li~~y~li~~~ir~~~~n~t~~~~k~iil~t~~~~~ 208 (672)
T KOG1978|consen 148 LFSTLPVRRKEFQRNIKRKFVKLISLIQAYALISTAIKFLVSNSTLAGKKNIILKTGGYGS 208 (672)
T ss_pred hcccCCCchHHhhcchhhhhhhHHhhHHHHHhhcccceeeeeeccccCCceeEEecCCcch
Confidence 221 2232 22335667888999999999999998766542 22333444455433
No 33
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.79 E-value=4.4e-09 Score=97.15 Aligned_cols=86 Identities=37% Similarity=0.546 Sum_probs=67.5
Q ss_pred CchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCC
Q psy13357 48 TGLHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNK 124 (833)
Q Consensus 48 ~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd 124 (833)
..|+++++|+++||+|.+..+ ..|.|.+..++ .|+|+|||.|||.+..+. +|..+.++.+
T Consensus 4 ~~l~~il~~ll~Na~~~~~~~--~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~------------~~~~~~~~~~--- 66 (111)
T PF02518_consen 4 DRLRQILSELLDNAIKHSPEG--GKIDITIEEDDDHLSIEISDNGVGIPPEELEK------------LFEPFFTSDK--- 66 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--SEEEEEEEEETTEEEEEEEESSSSTTHHHHHH------------HCSTTSHSSS---
T ss_pred HHHHHHHHHHHHHHHHHhcCC--CEEEEEEEEecCeEEEEEEecccccccccccc------------chhhcccccc---
Confidence 469999999999999999766 78999988753 799999999999876653 5655555554
Q ss_pred CcceecCCcccccchhhhhcccceeEEE
Q psy13357 125 NSYKISGGLHGIGLSCVNGLSRFLQLTI 152 (833)
Q Consensus 125 ~~ykvSgGlhGvG~svvNAlS~~~~Vev 152 (833)
..... +| ||+|+++++.+++.+..++
T Consensus 67 ~~~~~-~g-~GlGL~~~~~~~~~~~g~l 92 (111)
T PF02518_consen 67 SETSI-SG-HGLGLYIVKQIAERHGGEL 92 (111)
T ss_dssp SSGGS-SS-SSHHHHHHHHHHHHTTEEE
T ss_pred ccccc-CC-CChHHHHHHHHHHHCCCEE
Confidence 22222 23 9999999999999987764
No 34
>KOG1979|consensus
Probab=98.79 E-value=1.2e-08 Score=116.19 Aligned_cols=157 Identities=22% Similarity=0.270 Sum_probs=119.9
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC--eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCC---CC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSDN--SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGK---FN 123 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg--sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgK---Fd 123 (833)
-+...++|+|+||+|+. ++.|.|.+..+| -+.|+|||-||--+..| ++++.|+.|| |.
T Consensus 27 RP~NAlKEliENSLDA~----ST~I~V~vk~GGLKLlQisDnG~GI~reDl~-------------ilCeRftTSKL~kFE 89 (694)
T KOG1979|consen 27 RPVNALKELIENSLDAN----STSIDVLVKDGGLKLLQISDNGSGIRREDLP-------------ILCERFTTSKLTKFE 89 (694)
T ss_pred chHHHHHHHHhccccCC----CceEEEEEecCCeEEEEEecCCCccchhhhH-------------HHHHHhhhhhcchhH
Confidence 47889999999999986 899999998777 57899999999987776 7889999988 44
Q ss_pred CCcceecCCcccccchhhhhcccceeEEEEe-CCe-EEEEEEEcccccccccccccccccCCceEeccCCCCccEEEEE-
Q psy13357 124 KNSYKISGGLHGIGLSCVNGLSRFLQLTINR-NKK-IHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFW- 200 (833)
Q Consensus 124 d~~ykvSgGlhGvG~svvNAlS~~~~Vev~r-~Gk-~y~q~f~~G~~~~~~~~~~~~~~~~~l~~~g~~~~~GT~V~F~- 200 (833)
|-.--.|-|++|..++.+--.+ +.+|++++ +|+ .|+..|.+| +...++ .+...+.||.|+..
T Consensus 90 DL~~lsTyGFRGEALASiShVA-~VtV~TK~~~~~cayrasY~DG------------km~~~p--KpcAgk~GT~I~ved 154 (694)
T KOG1979|consen 90 DLFSLSTYGFRGEALASISHVA-HVTVTTKTAEGKCAYRASYRDG------------KMIATP--KPCAGKQGTIITVED 154 (694)
T ss_pred HHHhhhhcCccHHHHhhhhhee-EEEEEEeecCceeeeEEEeecc------------ccccCC--CCccCCCceEEEehH
Confidence 4444567899999999888777 66777665 444 699999999 333232 24457899999965
Q ss_pred -----eCc-cccccccccHHHHHHHHHHhhccCCCcEEEEeec
Q psy13357 201 -----VDE-KIFSNIEFHYEILKKRIRELSFLNNGVCITLIDE 237 (833)
Q Consensus 201 -----PD~-~iF~~~~~~~~~l~~RlrelA~LnpGl~I~l~de 237 (833)
|.+ .-|.+..=++..|...+-..|.-||++.+.+.-.
T Consensus 155 LFYN~~~Rrkal~~~~EE~~ki~dlv~ryAIHn~~VsFs~rk~ 197 (694)
T KOG1979|consen 155 LFYNMPTRRKALRNHAEEYRKIMDLVGRYAIHNPRVSFSLRKQ 197 (694)
T ss_pred hhccCHHHHHHhcCcHHHHHHHHHHHHHHheeCCCcceEEeec
Confidence 111 1112222356678899999999999999998764
No 35
>PRK05218 heat shock protein 90; Provisional
Probab=98.77 E-value=3.6e-07 Score=109.12 Aligned_cols=146 Identities=18% Similarity=0.174 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHHHhhhcC--------------CCCCeEEEEEecCC-eEEEEECCCCcccccccCCCCCCCCcceeeeee
Q psy13357 50 LHHLVFEILDNAIDESLA--------------GYCTKINVTIYSDN-SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMT 114 (833)
Q Consensus 50 L~hlv~EIVdNsiDE~~a--------------G~~~~I~V~I~~Dg-sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft 114 (833)
....++|+|.||.|+..+ ..-..|.|.++.++ .|+|.|||.||..+.... .|+
T Consensus 27 ~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG~GMt~eel~~------------~l~ 94 (613)
T PRK05218 27 KEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEARTLTISDNGIGMTREEVIE------------NLG 94 (613)
T ss_pred chHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCCeEEEEECCCCCCHHHHHH------------HHH
Confidence 467899999999999631 22347888888765 799999999999876543 333
Q ss_pred eccccC------CCCC--CcceecCCcccccchhhhhcccceeEEEEeCC---eEEEEEEEcccccccccccccccccCC
Q psy13357 115 ELHAGG------KFNK--NSYKISGGLHGIGLSCVNGLSRFLQLTINRNK---KIHYMEFRYGVLQNRIIKTINGISVSP 183 (833)
Q Consensus 115 ~LhAGg------KFdd--~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~G---k~y~q~f~~G~~~~~~~~~~~~~~~~~ 183 (833)
+.-++| +..+ ..-.-.-|.+|+|.-.+=+++.+++|+++..| ..|..+.+.| ..
T Consensus 95 ~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g~------------~~--- 159 (613)
T PRK05218 95 TIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDGE------------GE--- 159 (613)
T ss_pred hhccccchhHHHHhhcccccccccccccCcCchhhhhccCEEEEEEcCCCCCCceEEEEEeCC------------ce---
Confidence 222222 2211 11124568999999999899999999998755 3566666554 11
Q ss_pred ceEeccC-CCCccEEEEEeCccccccccccHHHHHHHHHHhh
Q psy13357 184 IKIIGDT-NKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELS 224 (833)
Q Consensus 184 l~~~g~~-~~~GT~V~F~PD~~iF~~~~~~~~~l~~RlrelA 224 (833)
..+.... ..+||+|+..+.++- ..-++...|.+.++.+|
T Consensus 160 ~~i~~~~~~~~GT~I~l~Lk~~~--~e~~e~~~i~~li~kys 199 (613)
T PRK05218 160 YTIEEIEKEERGTEITLHLKEDE--DEFLDEWRIRSIIKKYS 199 (613)
T ss_pred eEEeECCCCCCCcEEEEEECcch--hhhcCHHHHHHHHHHHH
Confidence 1111112 378999998754431 11135677888888888
No 36
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=98.71 E-value=2.5e-09 Score=103.90 Aligned_cols=97 Identities=24% Similarity=0.329 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCeEEEEEecC----CeEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCC
Q psy13357 50 LHHLVFEILDNAIDESLAGYCTKINVTIYSD----NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKN 125 (833)
Q Consensus 50 L~hlv~EIVdNsiDE~~aG~~~~I~V~I~~D----gsIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~ 125 (833)
+.+++.|+|+||+|+. ++.|.|.|+.+ ..|.|.|||.|||.+.... + ..+..++|...
T Consensus 3 ~~~al~ElI~Ns~DA~----a~~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~------------~-~~~g~s~k~~~- 64 (137)
T PF13589_consen 3 PEDALRELIDNSIDAG----ATNIKISIDEDKKGERYIVIEDNGEGMSREDLES------------F-FRIGRSSKKSE- 64 (137)
T ss_dssp CTHHHHHHHHHHHHHH----HHHEEEEEEEETTTTTEEEEEESSS---HHHHHH------------H-TTCHHTHHHHH-
T ss_pred HHHHHHHHHHHHHHcc----CCEEEEEEEcCCCCCcEEEEEECCcCCCHHHHHH------------h-ccccCCCCCch-
Confidence 4789999999999987 78899999986 4899999999999886542 2 35666665421
Q ss_pred cceecCCccccc-chhhhhcccceeEEEEeCCe--EEEEEEE
Q psy13357 126 SYKISGGLHGIG-LSCVNGLSRFLQLTINRNKK--IHYMEFR 164 (833)
Q Consensus 126 ~ykvSgGlhGvG-~svvNAlS~~~~Vev~r~Gk--~y~q~f~ 164 (833)
.-..+-|.+|+| ...+.+++..++|+++..|. .+...+.
T Consensus 65 ~~~~~~G~~G~G~k~A~~~~~~~~~v~S~~~~~~~~~~~~~~ 106 (137)
T PF13589_consen 65 KDRQSIGRFGIGLKLAIFSLGDRVEVISKTNGESFTYTIDYD 106 (137)
T ss_dssp HHGGGGGGGTSGCGGGGGGTEEEEEEEEESTTSSSEEEEEEE
T ss_pred hhhhcCCCcceEHHHHHHHhcCEEEEEEEECCCCcEEEEEEe
Confidence 124578999999 55677899999999998775 3444443
No 37
>cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. The GyrB dimerizes in response to ATP binding, and is homologous to the N-terminal half of eukaryotic Topo II and the ATPase fragment of MutL. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. Included in this group are proteins similar to human MLH1 and PMS2. MLH1 forms a heterodimer with PMS2 which functions in meiosis and in DNA mismatch
Probab=98.65 E-value=5.5e-08 Score=88.83 Aligned_cols=98 Identities=28% Similarity=0.461 Sum_probs=75.8
Q ss_pred hhhhhhhcCCCccCCceEEEeeccccccCCceEEEEeeeecCC---CcceeEEeecceeccCCcchHHHHHHHHHHHHHH
Q psy13357 253 GFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNS---YNENILCFTNNILQVDGGTHLTGLRSGITRAINK 329 (833)
Q Consensus 253 ~fv~~l~~~k~~l~~~~i~~~~e~~~~~~~~i~veval~~~d~---~~e~i~SFVN~I~T~~GGTHv~gf~~altr~in~ 329 (833)
+++..+...+. .+.++.++.+. .++.++++++|.+. ....+++|||++++..||+|..++.+++.+.++
T Consensus 3 ~~i~~~~g~~~--~~~~~~~~~~~-----~~~~v~g~l~~~~~~~~~~~~~~~fvN~r~v~~~~~~~~~i~~~~~~~~~- 74 (107)
T cd00329 3 DRLAEILGDKV--ADKLIYVEGES-----DGFRVEGAISYPDSGRSSKDRQFSFVNGRPVREGGTHVKAVREAYTRALN- 74 (107)
T ss_pred hHHHHHhCHHh--HhhcEEEeccC-----CCEEEEEEEeCCccCcccCCcEEEEEcCeEEcCCHHHHHHHHHHHHHHhc-
Confidence 44444443222 23456665544 56889999999864 457799999999998899999999999987764
Q ss_pred HHHHcccccccCCCCCHHHHhhcceeEEEEeecC--CCCC-ccccccc
Q psy13357 330 YIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPD--PKFN-SQTKNKL 374 (833)
Q Consensus 330 y~~~~~l~Kk~k~~l~~~DIregL~avIsvki~n--P~Fe-gQTK~kL 374 (833)
+++......++|+++++. |.|. +|||+++
T Consensus 75 ----------------~~~~~~~p~~vl~i~~~~~~~d~nv~p~K~~v 106 (107)
T cd00329 75 ----------------GDDVRRYPVAVLSLKIPPSLVDVNVHPTKEEV 106 (107)
T ss_pred ----------------ccCCCCCCEEEEEEEeChHHeeeCCCCCcccc
Confidence 455677889999999999 9999 9999876
No 38
>PRK14083 HSP90 family protein; Provisional
Probab=98.15 E-value=4.6e-06 Score=99.21 Aligned_cols=158 Identities=19% Similarity=0.229 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHHhhhcC------CCCCeEEEEE-ec-CCeEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCC
Q psy13357 50 LHHLVFEILDNAIDESLA------GYCTKINVTI-YS-DNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGK 121 (833)
Q Consensus 50 L~hlv~EIVdNsiDE~~a------G~~~~I~V~I-~~-DgsIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgK 121 (833)
....+.|+|.||.|+... +....|.|++ +. ...++|.|||.||+.+.... .|+.+-+++|
T Consensus 24 ~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~d~~~~~l~I~DnGiGmt~eel~~------------~l~~ig~S~k 91 (601)
T PRK14083 24 PRVYVRELLQNAVDAITARRALDPTAPGRIRIELTDAGGGTLIVEDNGIGLTEEEVHE------------FLATIGRSSK 91 (601)
T ss_pred cHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEccCCCcEEEEEeCCCCCCHHHHHH------------HHhhhccchh
Confidence 578899999999999753 1234789988 54 35899999999999876653 5566666666
Q ss_pred CCCC---cceecCCcccccchhhhhcccceeEEEEeCCeEEEEEEEc-ccccccccccccccccCCceEe-ccCCCCccE
Q psy13357 122 FNKN---SYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRY-GVLQNRIIKTINGISVSPIKII-GDTNKQGTK 196 (833)
Q Consensus 122 Fdd~---~ykvSgGlhGvG~svvNAlS~~~~Vev~r~Gk~y~q~f~~-G~~~~~~~~~~~~~~~~~l~~~-g~~~~~GT~ 196 (833)
-+.. .-..--|..|||...+=++|..++|+++..+......|+. |. +.. .+... +....+||+
T Consensus 92 ~~~~~~~~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W~~~~~----------g~y--~i~~~~~~~~~~GT~ 159 (601)
T PRK14083 92 RDENLGFARNDFLGQFGIGLLSCFLVADEIVVVSRSAKDGPAVEWRGKAD----------GTY--SVRKLETERAEPGTT 159 (601)
T ss_pred hhhhhcccccccccccccceEEEEEecCEEEEEeccCCCCceEEEEECCC----------Cce--EEEeCCCCCCCCCCE
Confidence 4321 1112359999999999999999999987653222334432 20 011 11111 234579999
Q ss_pred EEEEe--CccccccccccHHHHHHHHHHhhccCCCcEEEEee
Q psy13357 197 IHFWV--DEKIFSNIEFHYEILKKRIRELSFLNNGVCITLID 236 (833)
Q Consensus 197 V~F~P--D~~iF~~~~~~~~~l~~RlrelA~LnpGl~I~l~d 236 (833)
|+..+ |..-| ++.+.+.+-++..+-.- ..-|.+++
T Consensus 160 I~L~l~~d~~~~----~~~~~i~~li~~ys~~i-~~pI~l~~ 196 (601)
T PRK14083 160 VYLRPRPDAEEW----LERETVEELAKKYGSLL-PVPIRVEG 196 (601)
T ss_pred EEEEecCchhhh----ccHHHHHHHHHHHhccC-CCCcccCC
Confidence 99885 33333 34455666665554222 23455554
No 39
>KOG1977|consensus
Probab=97.99 E-value=3.9e-06 Score=97.44 Aligned_cols=170 Identities=18% Similarity=0.280 Sum_probs=117.1
Q ss_pred hhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCCCCCeEEEEEecC-CeEEEEECCCCcccccccCCCCCCCCcceeee
Q psy13357 34 RKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIV 112 (833)
Q Consensus 34 RkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~D-gsIsV~DnGrGIPv~~h~~~~~~~~~~~~E~V 112 (833)
+.|.|.-| ..|..+|.|+|-||||+. |+.|.|.++-. -+|.|.|||.|+.-+... .
T Consensus 12 ~lrSg~~~------~sla~~VeElv~NSiDA~----At~V~v~V~~~t~sv~ViDdG~G~~rdDl~-------------~ 68 (1142)
T KOG1977|consen 12 KLRSGLAI------SSLAQCVEELVLNSIDAE----ATCVAVRVNMETFSVQVIDDGFGMGRDDLE-------------K 68 (1142)
T ss_pred HHhccchH------HHHHHHHHHHHhhccccC----ceEEEEEecCceeEEEEEecCCCccHHHHH-------------H
Confidence 44555554 368999999999999986 89999998854 489999999999987654 4
Q ss_pred eeeccccCCCCCC---cceecCCcccccchhhhhcccceeEEEEeCCeE--E-EEEEEcccccccccccccccccCCceE
Q psy13357 113 MTELHAGGKFNKN---SYKISGGLHGIGLSCVNGLSRFLQLTINRNKKI--H-YMEFRYGVLQNRIIKTINGISVSPIKI 186 (833)
Q Consensus 113 ft~LhAGgKFdd~---~ykvSgGlhGvG~svvNAlS~~~~Vev~r~Gk~--y-~q~f~~G~~~~~~~~~~~~~~~~~l~~ 186 (833)
+|...+.+||..- .---+-|++|..+..+.-.|. +.|.++..|+. | .-.|..| ....-+.+
T Consensus 69 lg~ry~TSK~h~~ndl~~~~tyGfRGeALasIsd~s~-l~v~skkk~r~~~~~~kk~~~g------------s~~~~l~i 135 (1142)
T KOG1977|consen 69 LGNRYFTSKCHSVNDLENPRTYGFRGEALASISDMSS-LVVISKKKNRTMKTFVKKFQSG------------SALKALEI 135 (1142)
T ss_pred HHhhhhhhhceeccccccccccccchhhhhhhhhhhh-hhhhhhhcCCchhHHHHHHhcc------------ccceeccc
Confidence 6788888988532 224466999999988877774 44444433321 1 1123334 22222222
Q ss_pred eccCCCCccEEEEE------eCccccc-c-ccccHHHHHHHHHHhhccCCCcEEEEeeccc
Q psy13357 187 IGDTNKQGTKIHFW------VDEKIFS-N-IEFHYEILKKRIRELSFLNNGVCITLIDERI 239 (833)
Q Consensus 187 ~g~~~~~GT~V~F~------PD~~iF~-~-~~~~~~~l~~RlrelA~LnpGl~I~l~der~ 239 (833)
--.-...||+|+.. |=+.++. + ..-.++.|++|+..+|.+.|.+.+.+.+...
T Consensus 136 D~~R~~sGTtVtV~dlfY~lPVRRr~k~~~P~k~fe~Ik~~i~~i~lmHp~iSfsv~~~~s 196 (1142)
T KOG1977|consen 136 DVTRASSGTTVTVYDLFYQLPVRRRLKCMDPRKEFEKIKQRIEAISLMHPSISFSVRNDVS 196 (1142)
T ss_pred ccccccCCcEEEeHHhhhcchhhhhhhcCCHHHHHHHHHHHHHHHHhhccceeEEEEeccC
Confidence 11235689999965 5444443 2 2346788999999999999999999887654
No 40
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.89 E-value=3e-05 Score=67.73 Aligned_cols=80 Identities=29% Similarity=0.478 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCCc
Q psy13357 50 LHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNS 126 (833)
Q Consensus 50 L~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ 126 (833)
|.+++.|+++||++.... ....|.|.+..++ .|+|.|+|+|+|....+. .+..+ ....
T Consensus 1 l~~~~~~ll~Na~~~~~~-~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~------------~~~~~------~~~~ 61 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPE-GGGRITISVERDGDHLEIRVEDNGPGIPEEDLER------------IFERF------SDGS 61 (103)
T ss_pred CHHHHHHHHHHHHHhCcC-CCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHH------------Hhhhh------hcCC
Confidence 568999999999998754 2356777777653 688999999998765543 12111 1112
Q ss_pred ceecCCcccccchhhhhcccce
Q psy13357 127 YKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 127 ykvSgGlhGvG~svvNAlS~~~ 148 (833)
.+...+.+|+|+++++.++..+
T Consensus 62 ~~~~~~~~g~gl~~~~~~~~~~ 83 (103)
T cd00075 62 RSRKGGGTGLGLSIVKKLVELH 83 (103)
T ss_pred CCCCCCccccCHHHHHHHHHHc
Confidence 3445667999999999999843
No 41
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=97.85 E-value=2.7e-05 Score=93.87 Aligned_cols=156 Identities=21% Similarity=0.300 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHhhhcC------------CCCCeEEEEEe--cC-CeEEEEECCCCcccccccCCCCCCCCcceeeeeee
Q psy13357 51 HHLVFEILDNAIDESLA------------GYCTKINVTIY--SD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTE 115 (833)
Q Consensus 51 ~hlv~EIVdNsiDE~~a------------G~~~~I~V~I~--~D-gsIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~ 115 (833)
.-.++|+|.||.|++.. +....+.|.|. .+ ..++|.|||.||+-+.... -..|.
T Consensus 27 ~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~DnGiGMt~edl~~-----------~LgtI 95 (701)
T PTZ00272 27 EIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLVN-----------NLGTI 95 (701)
T ss_pred cHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEECCCCCCHHHHHH-----------Hhhhh
Confidence 44578999999999631 22234445544 43 3799999999999876543 12233
Q ss_pred ccccCC-CC----CCcceecCCcccccchhhhhcccceeEEEEeCC-eEEEEEEEcccccccccccccccccCCceEecc
Q psy13357 116 LHAGGK-FN----KNSYKISGGLHGIGLSCVNGLSRFLQLTINRNK-KIHYMEFRYGVLQNRIIKTINGISVSPIKIIGD 189 (833)
Q Consensus 116 LhAGgK-Fd----d~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~G-k~y~q~f~~G~~~~~~~~~~~~~~~~~l~~~g~ 189 (833)
.++|++ |- .+.-....|..|||.-.+=.+++..+|+++..+ ..|..+...+ +. -.+++. ...
T Consensus 96 a~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~~~~~~W~s~~~--g~--------y~i~~~--~~~ 163 (701)
T PTZ00272 96 ARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSDESYVWESSAG--GT--------FTITST--PES 163 (701)
T ss_pred hhcchHHHHHHhhccCCccccCCCCcceEEEEEeccEEEEEEecCCCceEEEEECCC--Cc--------EEEEeC--CCC
Confidence 344444 31 111134679999999999999999999887543 3454444332 00 111111 011
Q ss_pred CCCCccEEEEEe--CccccccccccHHHHHHHHHHhh-ccCCCcEEEEe
Q psy13357 190 TNKQGTKIHFWV--DEKIFSNIEFHYEILKKRIRELS-FLNNGVCITLI 235 (833)
Q Consensus 190 ~~~~GT~V~F~P--D~~iF~~~~~~~~~l~~RlrelA-~LnpGl~I~l~ 235 (833)
...+||+|+..+ |..-| ++...|...++..+ |+. .-|++.
T Consensus 164 ~~~~GT~I~L~Lk~d~~ef----~~~~~i~~li~kYs~fi~--~PI~l~ 206 (701)
T PTZ00272 164 DMKRGTRITLHLKEDQMEY----LEPRRLKELIKKHSEFIG--YDIELM 206 (701)
T ss_pred CCCCCCEEEEEECCchHHh----ccHHHHHHHHHHhccccC--cceEEe
Confidence 246999999775 33334 34556777777766 443 335553
No 42
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.56 E-value=0.00017 Score=63.97 Aligned_cols=84 Identities=30% Similarity=0.402 Sum_probs=58.6
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKN 125 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~ 125 (833)
-|.+++.|+++|+++.+..+ ..|.|.+..++ .|.|.|+|+|++....+. ++..++.+..
T Consensus 5 ~l~~~~~~l~~n~~~~~~~~--~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~------------~~~~~~~~~~---- 66 (111)
T smart00387 5 RLRQVLSNLLDNAIKYTPEG--GRITVTLERDGDHLEITVEDNGPGIPPEDLEK------------IFEPFFRTDG---- 66 (111)
T ss_pred HHHHHHHHHHHHHHhcCCCC--CeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHH------------HhcCeEECCC----
Confidence 47899999999999987553 45667766542 689999999998765443 3333332221
Q ss_pred cceecCCcccccchhhhhcccceeEE
Q psy13357 126 SYKISGGLHGIGLSCVNGLSRFLQLT 151 (833)
Q Consensus 126 ~ykvSgGlhGvG~svvNAlS~~~~Ve 151 (833)
.....+.+|+|+++++.++..+...
T Consensus 67 -~~~~~~~~g~gl~~~~~~~~~~~g~ 91 (111)
T smart00387 67 -RSRKIGGTGLGLSIVKKLVELHGGE 91 (111)
T ss_pred -CCCCCCcccccHHHHHHHHHHcCCE
Confidence 1234456899999999999887443
No 43
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=8.1e-05 Score=87.57 Aligned_cols=135 Identities=19% Similarity=0.261 Sum_probs=81.9
Q ss_pred HHHHHHHHHhhhcC-------C---C----CCeEEEEEecC-CeEEEEECCCCcccccccCCCCCCCCcceeeeeeeccc
Q psy13357 54 VFEILDNAIDESLA-------G---Y----CTKINVTIYSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHA 118 (833)
Q Consensus 54 v~EIVdNsiDE~~a-------G---~----~~~I~V~I~~D-gsIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhA 118 (833)
++|+|.||.|++.. + . -..|.|..++| ..++|.|||.||.-+.....-..=.+|.-.-.+..++.
T Consensus 32 LRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~kTLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~ 111 (623)
T COG0326 32 LRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDNKTLTISDNGIGMTKDEVIENLGTIAKSGTKEFLESLSE 111 (623)
T ss_pred HHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccCCEEEEEeCCCCCCHHHHHHHHHHhhhccHHHHHHHhcc
Confidence 58999999998842 1 1 25688888887 48999999999987654321000012222222222232
Q ss_pred cCCCCCCcceecCCcccccchhhhhcccceeEEEEeCC--eEEEEEEE-cccccccccccccccccCCceEeccCCCCcc
Q psy13357 119 GGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNK--KIHYMEFR-YGVLQNRIIKTINGISVSPIKIIGDTNKQGT 195 (833)
Q Consensus 119 GgKFdd~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~G--k~y~q~f~-~G~~~~~~~~~~~~~~~~~l~~~g~~~~~GT 195 (833)
+. .++ .-.|+.|||.-.+=++|.+.+|.++..| ..| .|+ .| ...-.+..+.....+||
T Consensus 112 ~~--~~~---~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~--~W~S~g------------~g~ytv~~~~~~~~~GT 172 (623)
T COG0326 112 DQ--KDS---DLIGQFGVGFYSAFMVADKVTVITRSAGEDEAY--HWESDG------------EGEYTVEDIDKEPRRGT 172 (623)
T ss_pred cc--ccc---cccccccchhhheeeeeeeEEEEeccCCCCcce--EEEEcC------------CCceEEeeccCCCCCCc
Confidence 22 121 2369999999999999999999998866 345 564 34 22212222222222599
Q ss_pred EEEEEe--Cccccc
Q psy13357 196 KIHFWV--DEKIFS 207 (833)
Q Consensus 196 ~V~F~P--D~~iF~ 207 (833)
+|+..+ |-.-|.
T Consensus 173 ~I~L~Lk~~e~efl 186 (623)
T COG0326 173 EITLHLKEEEDEFL 186 (623)
T ss_pred EEEEEECCchHHHh
Confidence 999774 444453
No 44
>PTZ00130 heat shock protein 90; Provisional
Probab=97.16 E-value=0.0016 Score=79.34 Aligned_cols=155 Identities=22% Similarity=0.251 Sum_probs=91.4
Q ss_pred HHHHHHHHHhhhcC------------C--CCCeEEEEEecC-CeEEEEECCCCcccccccCCCCCCCCcceeeeeeeccc
Q psy13357 54 VFEILDNAIDESLA------------G--YCTKINVTIYSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHA 118 (833)
Q Consensus 54 v~EIVdNsiDE~~a------------G--~~~~I~V~I~~D-gsIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhA 118 (833)
++|+|.||.|+... + .--.|.|..+.+ +.++|.|||-||.-+.... -..|..++
T Consensus 93 LRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI~DnGIGMT~eEl~~-----------nLgTIA~S 161 (814)
T PTZ00130 93 LRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKEDLIN-----------NLGTIAKS 161 (814)
T ss_pred eehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEEEECCCCCCHHHHHH-----------Hhhhhccc
Confidence 47999999998741 1 122566666553 4799999999998775543 12233333
Q ss_pred cCC-C----CC-CcceecCCcccccchhhhhcccceeEEEEeCC-eEEEEEEEcccccccccccccccccCCceEeccCC
Q psy13357 119 GGK-F----NK-NSYKISGGLHGIGLSCVNGLSRFLQLTINRNK-KIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTN 191 (833)
Q Consensus 119 GgK-F----dd-~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~G-k~y~q~f~~G~~~~~~~~~~~~~~~~~l~~~g~~~ 191 (833)
|++ | .. ..-..--|+.|||.-.+=.++...+|+++..| ..|..+- .|. +. -.+.+.. .+.+.
T Consensus 162 gt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~~~~~~W~s-~g~-g~--------y~I~e~~-~~~~~ 230 (814)
T PTZ00130 162 GTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNNDEQYIWES-TAD-AK--------FTIYKDP-RGSTL 230 (814)
T ss_pred ccHHHHHHhhccCCCcccccccccchhheeeecCEEEEEEcCCCCceEEEEE-CCC-Cc--------EEEEECC-CCCCC
Confidence 322 3 11 11123579999999999999999999988644 3444332 230 00 1111110 02234
Q ss_pred CCccEEEEEeC--ccccccccccHHHHHHHHHHhh-ccCCCcEEEEee
Q psy13357 192 KQGTKIHFWVD--EKIFSNIEFHYEILKKRIRELS-FLNNGVCITLID 236 (833)
Q Consensus 192 ~~GT~V~F~PD--~~iF~~~~~~~~~l~~RlrelA-~LnpGl~I~l~d 236 (833)
.+||+|+..+. ..-| ++...|...++..+ |+. .-|.+..
T Consensus 231 ~rGT~I~LhLked~~ef----l~~~~ik~likkYS~fI~--~PI~l~~ 272 (814)
T PTZ00130 231 KRGTRISLHLKEDATNL----MNDKKLVDLISKYSQFIQ--YPIYLLH 272 (814)
T ss_pred CCCcEEEEEECCchhhh----ccHHHHHHHHHHhhccCC--CCEEEcc
Confidence 79999998753 3333 35667777777776 443 2355543
No 45
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=97.10 E-value=0.0023 Score=60.36 Aligned_cols=89 Identities=25% Similarity=0.237 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHHhhhcCCCC-CeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCC
Q psy13357 50 LHHLVFEILDNAIDESLAGYC-TKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKN 125 (833)
Q Consensus 50 L~hlv~EIVdNsiDE~~aG~~-~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~ 125 (833)
+.-++.|++.||+..+..+.. ..|.|.+..+. .|+|+|+|.|+|....+. .... +.
T Consensus 32 ~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~----~~~~--~~-------------- 91 (125)
T PF13581_consen 32 LELAVSEALTNAVEHGYPGDPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQ----PDPW--EP-------------- 91 (125)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcCCEEEEEEEECCCCCChhhccC----cccc--cC--------------
Confidence 667789999999999986543 56777766543 689999999988775543 1100 00
Q ss_pred cceecCCcccccchhhhhcccceeEEEEeCCeEEEEE
Q psy13357 126 SYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYME 162 (833)
Q Consensus 126 ~ykvSgGlhGvG~svvNAlS~~~~Vev~r~Gk~y~q~ 162 (833)
......|.|+.++..|+..+.+ ...+|...+++
T Consensus 92 ---~~~~~~G~Gl~li~~l~D~~~~-~~~~gn~v~l~ 124 (125)
T PF13581_consen 92 ---DSLREGGRGLFLIRSLMDEVDY-REDGGNTVTLR 124 (125)
T ss_pred ---CCCCCCCcCHHHHHHHHcEEEE-ECCCeEEEEEE
Confidence 2234578999999999999988 33444444443
No 46
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=97.00 E-value=0.0026 Score=63.61 Aligned_cols=91 Identities=15% Similarity=0.080 Sum_probs=59.6
Q ss_pred chhHHHHHHHHHHHhhhcCCC-CCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGY-CTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNK 124 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~-~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd 124 (833)
.+.-++.|++.|||..+..+. ...|.|++..++ .|.|.|+|.|+|.+..+. .+. .+..++.
T Consensus 42 ~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~------------~~~-p~~~~~~-- 106 (161)
T PRK04069 42 DMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKS------------KLG-PYDISKP-- 106 (161)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEECCEEEEEEEECCcCCChHHhcc------------ccC-CCCCCCc--
Confidence 478889999999999997543 346777766433 699999999998664432 111 0110110
Q ss_pred CcceecCCcccccchhhhhcccceeEEEEeCCeE
Q psy13357 125 NSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKI 158 (833)
Q Consensus 125 ~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~Gk~ 158 (833)
....--+|.|+.++..|+..+.+.. .+|..
T Consensus 107 ---~~~~~~~G~GL~li~~l~d~v~~~~-~~G~~ 136 (161)
T PRK04069 107 ---IEDLREGGLGLFLIETLMDDVTVYK-DSGVT 136 (161)
T ss_pred ---ccccCCCceeHHHHHHHHHhEEEEc-CCCcE
Confidence 0111235899999999999877764 35543
No 47
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.92 E-value=0.0021 Score=75.41 Aligned_cols=82 Identities=23% Similarity=0.374 Sum_probs=57.2
Q ss_pred CchhHHHHHHHHHHHhhhcCC--CCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCC
Q psy13357 48 TGLHHLVFEILDNAIDESLAG--YCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKF 122 (833)
Q Consensus 48 ~GL~hlv~EIVdNsiDE~~aG--~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKF 122 (833)
..|..++.++++||++.+... ....|.|.+..++ .|+|.|||.|||.+..+. +|...++ +|
T Consensus 431 ~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~------------iF~~~~~-tk- 496 (545)
T PRK15053 431 TEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDK------------IFEQGVS-TR- 496 (545)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHH------------HhCCCCC-CC-
Confidence 358889999999999987532 2467888887643 589999999999876553 5543332 11
Q ss_pred CCCcceecCCcccccchhhhhcccce
Q psy13357 123 NKNSYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 123 dd~~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
-+-.|| ||+|++.|.-+.+.+
T Consensus 497 ----~~~~~g-~GlGL~ivk~iv~~~ 517 (545)
T PRK15053 497 ----ADEPGE-HGIGLYLIASYVTRC 517 (545)
T ss_pred ----CCCCCC-ceeCHHHHHHHHHHc
Confidence 011233 899999998877553
No 48
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=96.84 E-value=0.0013 Score=79.24 Aligned_cols=77 Identities=25% Similarity=0.406 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhhhc--CCCCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCCc
Q psy13357 52 HLVFEILDNAIDESL--AGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNS 126 (833)
Q Consensus 52 hlv~EIVdNsiDE~~--aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ 126 (833)
.|+-.++-|-+|+|. ++.+++|.|....++ .++|+|||+|||.+..+. ||-....++|+++
T Consensus 774 ~LieQVLiNLleNA~Kyap~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~------------IFD~F~r~~~~~~-- 839 (890)
T COG2205 774 PLIEQVLINLLENALKYAPPGSEIRINAGVERENVVFSVIDEGPGIPEGELER------------IFDKFYRGNKESA-- 839 (890)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEEEEEecceEEEEEEeCCCCCChhHHHH------------hhhhhhcCCCCCC--
Confidence 466777778888877 688898888887655 589999999999887664 9999999999876
Q ss_pred ceecCCcccccchhhhhccc
Q psy13357 127 YKISGGLHGIGLSCVNGLSR 146 (833)
Q Consensus 127 ykvSgGlhGvG~svvNAlS~ 146 (833)
+.| -|+|+++|-.+=+
T Consensus 840 ---~~G-~GLGLsIc~~iv~ 855 (890)
T COG2205 840 ---TRG-VGLGLAICRGIVE 855 (890)
T ss_pred ---CCC-ccccHHHHHHHHH
Confidence 333 4789998877654
No 49
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.75 E-value=0.0038 Score=70.93 Aligned_cols=80 Identities=26% Similarity=0.351 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHHhhhcCCCC--CeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCC
Q psy13357 50 LHHLVFEILDNAIDESLAGYC--TKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNK 124 (833)
Q Consensus 50 L~hlv~EIVdNsiDE~~aG~~--~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd 124 (833)
|..++..++.||++....+.. ..|.|....++ .++|.|||.|||.+..+. +|....+ +|-.
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~------------iF~~f~~-~~~~- 453 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTALNGDLIVVSILDSGPGIPQDLRYK------------VFEPFFT-TKGG- 453 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHH------------hcCCCcc-cCCC-
Confidence 788999999999998765532 35777665433 689999999999887664 6643322 2211
Q ss_pred CcceecCCcccccchhhhhcccce
Q psy13357 125 NSYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 125 ~~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
. ..| .|+|+++|.-+.+.+
T Consensus 454 ---~-~~G-~GlGL~i~~~iv~~~ 472 (494)
T TIGR02938 454 ---S-RKH-IGMGLSVAQEIVADH 472 (494)
T ss_pred ---C-CCC-CcccHHHHHHHHHHc
Confidence 0 123 899999999888654
No 50
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.63 E-value=0.002 Score=75.01 Aligned_cols=77 Identities=22% Similarity=0.299 Sum_probs=55.3
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKN 125 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~ 125 (833)
-|..++.++++||++.+..+....|.|++..++ .|+|.|||.|||.+..+. +|... |
T Consensus 433 ~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~------------iF~~~-----~--- 492 (542)
T PRK11086 433 ELITILGNLIENALEAVGGEEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDA------------IFDKG-----Y--- 492 (542)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHH------------HHhCC-----C---
Confidence 377889999999999765444567888887644 589999999999875543 45321 1
Q ss_pred cceecCCcccccchhhhhcccc
Q psy13357 126 SYKISGGLHGIGLSCVNGLSRF 147 (833)
Q Consensus 126 ~ykvSgGlhGvG~svvNAlS~~ 147 (833)
...++-+|+|++.|.-+.+.
T Consensus 493 --~~~~~g~GlGL~iv~~iv~~ 512 (542)
T PRK11086 493 --STKGSNRGVGLYLVKQSVEN 512 (542)
T ss_pred --ccCCCCCcCcHHHHHHHHHH
Confidence 11233489999998887654
No 51
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=96.60 E-value=0.0093 Score=57.27 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=52.3
Q ss_pred CchhHHHHHHHHHHHhhhcC-CCCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCC
Q psy13357 48 TGLHHLVFEILDNAIDESLA-GYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFN 123 (833)
Q Consensus 48 ~GL~hlv~EIVdNsiDE~~a-G~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFd 123 (833)
..+..++.|++.||+..+.. .....|.|++..++ .++|.|+|.|||.. +. +|.....+ +
T Consensus 38 ~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~~~~~i~I~D~G~gi~~~--~~------------~~~~~~~~-~-- 100 (137)
T TIGR01925 38 TDIKTAVSEAVTNAIIHGYEENCEGVVYISATIEDHEVYITVRDEGIGIENL--EE------------AREPLYTS-K-- 100 (137)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeCCEEEEEEEEcCCCcCch--hH------------hhCCCccc-C--
Confidence 35778899999999976543 22456888877533 58899999999831 11 12111111 0
Q ss_pred CCcceecCCcccccchhhhhcccceeEE
Q psy13357 124 KNSYKISGGLHGIGLSCVNGLSRFLQLT 151 (833)
Q Consensus 124 d~~ykvSgGlhGvG~svvNAlS~~~~Ve 151 (833)
-..+-+|.|+++++.+...+.++
T Consensus 101 -----~~~~~~GlGL~lv~~~~~~l~~~ 123 (137)
T TIGR01925 101 -----PELERSGMGFTVMENFMDDVSVD 123 (137)
T ss_pred -----CCCCCCcccHHHHHHhCCcEEEE
Confidence 11234799999998877654443
No 52
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=96.58 E-value=0.0054 Score=69.52 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=52.9
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKN 125 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~ 125 (833)
-|..++.++++||+..+.+ ...|.|.+..++ .|+|.|||.|||.+..+. +|-..+.+.+=. .
T Consensus 353 ~l~~~~~nll~Nai~~~~~--~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~------------~~~~~~~~~~~~-~ 417 (457)
T TIGR01386 353 MFRRAISNLLSNALRHTPD--GGTITVRIERRSDEVRVSVSNPGPGIPPEHLSR------------LFDRFYRVDPAR-S 417 (457)
T ss_pred HHHHHHHHHHHHHHHcCCC--CceEEEEEEecCCEEEEEEEeCCCCCCHHHHHH------------hccccccCCccc-C
Confidence 3666677777777776533 357889888765 699999999999875543 443333321100 0
Q ss_pred cceecCCcccccchhhhhcccce
Q psy13357 126 SYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 126 ~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
.. .+-+|+|++.|.-+.+.+
T Consensus 418 --~~-~~g~GlGL~i~~~~~~~~ 437 (457)
T TIGR01386 418 --NS-GEGTGLGLAIVRSIMEAH 437 (457)
T ss_pred --CC-CCCccccHHHHHHHHHHC
Confidence 11 233899999988877654
No 53
>PRK10604 sensor protein RstB; Provisional
Probab=96.53 E-value=0.0046 Score=70.97 Aligned_cols=80 Identities=20% Similarity=0.389 Sum_probs=51.6
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKN 125 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~ 125 (833)
-+..++..+|+||+..+ ...|.|++..++ .|+|.|||.|||.+..+. +|-....+. ..
T Consensus 319 ~l~~vl~NLl~NAik~~----~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~------------if~~f~r~~---~~ 379 (433)
T PRK10604 319 LMERVLDNLLNNALRYA----HSRVRVSLLLDGNQACLIVEDDGPGIPPEERER------------VFEPFVRLD---PS 379 (433)
T ss_pred HHHHHHHHHHHHHHHhC----CCeEEEEEEEECCEEEEEEEEcCCCCCHHHHhh------------cCCCCccCC---CC
Confidence 36667777777777654 356777766533 689999999999876653 553322211 11
Q ss_pred cceecCCcccccchhhhhcccce
Q psy13357 126 SYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 126 ~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
.-+.++ -+|+|++.|.-+.+++
T Consensus 380 ~~~~~~-g~GLGL~ivk~i~~~~ 401 (433)
T PRK10604 380 RDRATG-GCGLGLAIVHSIALAM 401 (433)
T ss_pred CCCCCC-CccchHHHHHHHHHHC
Confidence 111233 4799999998888765
No 54
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=96.50 E-value=0.0031 Score=73.26 Aligned_cols=79 Identities=28% Similarity=0.425 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHHhhhcCCC-CCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCC
Q psy13357 50 LHHLVFEILDNAIDESLAGY-CTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKN 125 (833)
Q Consensus 50 L~hlv~EIVdNsiDE~~aG~-~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~ 125 (833)
+..++--++|||+|+..++. -..|.+.|+.+| -|+|.|+|+|||.+..+. +|- .
T Consensus 428 litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~------------iFe---------~- 485 (537)
T COG3290 428 LVTILGNLIDNALEALLAPEENKEIELSLSDRGDELVIEVADTGPGIPPEVRDK------------IFE---------K- 485 (537)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHH------------HHh---------c-
Confidence 56677899999999998544 478999999876 589999999999875542 331 1
Q ss_pred cceec-CCcccccchhhhhcccceeE
Q psy13357 126 SYKIS-GGLHGIGLSCVNGLSRFLQL 150 (833)
Q Consensus 126 ~ykvS-gGlhGvG~svvNAlS~~~~V 150 (833)
.|-+- .+-||+|+.+|-.+-+.+.-
T Consensus 486 G~Stk~~~~rGiGL~Lvkq~V~~~~G 511 (537)
T COG3290 486 GVSTKNTGGRGIGLYLVKQLVERLGG 511 (537)
T ss_pred CccccCCCCCchhHHHHHHHHHHcCc
Confidence 22222 36699999999988877643
No 55
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=96.38 E-value=0.013 Score=61.95 Aligned_cols=95 Identities=20% Similarity=0.341 Sum_probs=66.5
Q ss_pred CeeeecCCCcCchhHHHHHHHHHHHhhhcC-CCCCeEEEEEec--CC---eEEEEECCCCcccccccCCCCCCCCcceee
Q psy13357 38 EMYIGDTSDGTGLHHLVFEILDNAIDESLA-GYCTKINVTIYS--DN---SISISDNGRGIPIDIKIDDKHKPKRSAAEI 111 (833)
Q Consensus 38 gMYIGst~~~~GL~hlv~EIVdNsiDE~~a-G~~~~I~V~I~~--Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~ 111 (833)
..+++.... -.|.-+|.|++.||+-.+-- +....|.|++.. ++ ..+|||||.|+|++.-+
T Consensus 112 ~~~l~~d~A-~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~~~~------------- 177 (221)
T COG3920 112 NVFLDPDTA-VPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVEAPL------------- 177 (221)
T ss_pred ceEECchhh-HHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCCCCC-------------
Confidence 344444333 47889999999999999864 355677777664 44 58999999999986321
Q ss_pred eeeeccccCCCCCCcceecCCcccccchhhhhcc-cceeEE--EE-eCCeEEEEEEEcc
Q psy13357 112 VMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLS-RFLQLT--IN-RNKKIHYMEFRYG 166 (833)
Q Consensus 112 Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS-~~~~Ve--v~-r~Gk~y~q~f~~G 166 (833)
...|+|..+|+.+. +.+.-. .+ .+|-.|.++|...
T Consensus 178 --------------------~~~g~G~~Lv~~lv~~q~~g~~~~~~~~Gt~~~i~~~~~ 216 (221)
T COG3920 178 --------------------SRGGFGLQLVERLVPEQLGGELEDERPDGTEFRLRFPLS 216 (221)
T ss_pred --------------------CCCCcHHHHHHHHHHHHcCCeEEEEcCCCEEEEEEEecc
Confidence 13689999999998 455333 33 3577788877654
No 56
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=96.36 E-value=0.0062 Score=69.31 Aligned_cols=79 Identities=25% Similarity=0.376 Sum_probs=51.9
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKN 125 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~ 125 (833)
-|.+++.++|+||+..+ .+.|.|.+..++ .++|.|||.|||.+..+. +|...+.+.+-
T Consensus 353 ~l~~~l~nli~NA~~~~----~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~------------if~~~~~~~~~--- 413 (461)
T PRK09470 353 ALASALENIVRNALRYS----HTKIEVAFSVDKDGLTITVDDDGPGVPEEEREQ------------IFRPFYRVDEA--- 413 (461)
T ss_pred HHHHHHHHHHHHHHHhC----CCcEEEEEEEECCEEEEEEEECCCCCCHHHHHH------------hcCCCccCCcc---
Confidence 37788888888888765 345777766433 589999999999875543 55444332221
Q ss_pred cceecCCcccccchhhhhcccc
Q psy13357 126 SYKISGGLHGIGLSCVNGLSRF 147 (833)
Q Consensus 126 ~ykvSgGlhGvG~svvNAlS~~ 147 (833)
.....+-.|+|++.|+-+-+.
T Consensus 414 -~~~~~~g~GlGL~iv~~~v~~ 434 (461)
T PRK09470 414 -RDRESGGTGLGLAIVENAIQQ 434 (461)
T ss_pred -cCCCCCCcchhHHHHHHHHHH
Confidence 111223469999998877653
No 57
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=96.30 E-value=0.0047 Score=70.60 Aligned_cols=81 Identities=15% Similarity=0.278 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCCc
Q psy13357 50 LHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNS 126 (833)
Q Consensus 50 L~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ 126 (833)
+..++..+|+||+.....+ ..|.|.+..++ .|+|.|||+|||.+..+. +|...+.+.+ ..
T Consensus 353 l~qvl~nll~NAi~~~~~~--~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~------------lf~~~~~~~~---~~ 415 (466)
T PRK10549 353 LMQLFNNLLENSLRYTDSG--GSLHISAEQRDKTLRLTFADSAPGVSDEQLQK------------LFERFYRTEG---SR 415 (466)
T ss_pred HHHHHHHHHHHHHHhCCCC--CEEEEEEEEcCCEEEEEEEecCCCcCHHHHHH------------hccCcccCCC---Cc
Confidence 6677777888887765433 46788777543 588999999999775543 5543332211 11
Q ss_pred ceecCCcccccchhhhhcccce
Q psy13357 127 YKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 127 ykvSgGlhGvG~svvNAlS~~~ 148 (833)
.+.+ |-+|+|+++|..+.+.+
T Consensus 416 ~~~~-~g~GlGL~iv~~i~~~~ 436 (466)
T PRK10549 416 NRAS-GGSGLGLAICLNIVEAH 436 (466)
T ss_pred CCCC-CCCcHHHHHHHHHHHHc
Confidence 1223 34799999998887664
No 58
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=96.30 E-value=0.0074 Score=68.90 Aligned_cols=82 Identities=23% Similarity=0.274 Sum_probs=54.3
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKN 125 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~ 125 (833)
-|.+++..+++||++..-.| ..|.|.+..++ .|+|.|||.|||.+..+. +|-......+
T Consensus 317 ~l~~vl~NLl~NAik~~~~~--~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~------------if~~f~~~~~---- 378 (430)
T PRK11006 317 QLRSAISNLVYNAVNHTPEG--THITVRWQRVPQGAEFSVEDNGPGIAPEHIPR------------LTERFYRVDK---- 378 (430)
T ss_pred HHHHHHHHHHHHHHhcCCCC--CeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHH------------hccCcccccC----
Confidence 48888999999999876443 45777765533 699999999999876654 4433322211
Q ss_pred cceecCCcccccchhhhhcccce
Q psy13357 126 SYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 126 ~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
......|-.|+|+++|..+.+.+
T Consensus 379 ~~~~~~~G~GLGL~ivk~iv~~~ 401 (430)
T PRK11006 379 ARSRQTGGSGLGLAIVKHALSHH 401 (430)
T ss_pred CCCCCCCCCchHHHHHHHHHHHC
Confidence 11111233799999998777543
No 59
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=96.29 E-value=0.029 Score=56.13 Aligned_cols=95 Identities=17% Similarity=0.168 Sum_probs=60.9
Q ss_pred chhHHHHHHHHHHHhhhcCCC-CCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGY-CTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNK 124 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~-~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd 124 (833)
.+.-++.|++.||+-.+..+. ...|.|++..++ .|+|+|+|.|+|....+. .+........-
T Consensus 42 ~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~------------~~~~~~~~~~~-- 107 (159)
T TIGR01924 42 DLKIAVSEACTNAVKHAYKEGENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQ------------SLGPYDGSEPI-- 107 (159)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeCCEEEEEEEEcccccCchhhcc------------ccCCCCCCCCc--
Confidence 467789999999999987542 356777766533 688999999998765432 11110000000
Q ss_pred CcceecCCcccccchhhhhcccceeEEEEeCCeEEEEE
Q psy13357 125 NSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYME 162 (833)
Q Consensus 125 ~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~Gk~y~q~ 162 (833)
... .-+|.|+.++..|+..+.++. .+|...++.
T Consensus 108 ~~~----~~~G~GL~Li~~L~D~v~~~~-~~G~~l~l~ 140 (159)
T TIGR01924 108 DDL----REGGLGLFLIETLMDEVEVYE-DSGVTVAMT 140 (159)
T ss_pred ccC----CCCccCHHHHHHhccEEEEEe-CCCEEEEEE
Confidence 011 125899999999999888764 455443333
No 60
>PRK03660 anti-sigma F factor; Provisional
Probab=96.16 E-value=0.034 Score=53.84 Aligned_cols=83 Identities=17% Similarity=0.230 Sum_probs=53.1
Q ss_pred chhHHHHHHHHHHHhhhcCCCC-CeEEEEEecC-C--eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYC-TKINVTIYSD-N--SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNK 124 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~-~~I~V~I~~D-g--sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd 124 (833)
-+.-++.|++.||+..+..+.. ..|.|.+..+ + .++|.|+|.|||.... ++.....+..
T Consensus 39 ~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~~~~--------------~~~~~~~~~~--- 101 (146)
T PRK03660 39 EIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIEEEELEITVRDEGKGIEDIEE--------------AMQPLYTTKP--- 101 (146)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEECCCEEEEEEEEccCCCChHHH--------------hhCCCcccCC---
Confidence 4677889999999987654333 5677776643 3 5899999999984211 1111111110
Q ss_pred CcceecCCcccccchhhhhcccceeEEEE
Q psy13357 125 NSYKISGGLHGIGLSCVNGLSRFLQLTIN 153 (833)
Q Consensus 125 ~~ykvSgGlhGvG~svvNAlS~~~~Vev~ 153 (833)
..+.+|+|++++..+...+.++..
T Consensus 102 -----~~~~~GlGL~i~~~~~~~i~~~~~ 125 (146)
T PRK03660 102 -----ELERSGMGFTVMESFMDEVEVESE 125 (146)
T ss_pred -----CCCCccccHHHHHHhCCeEEEEec
Confidence 112369999999988876665543
No 61
>PRK10364 sensor protein ZraS; Provisional
Probab=96.15 E-value=0.0083 Score=69.00 Aligned_cols=76 Identities=25% Similarity=0.342 Sum_probs=52.8
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKN 125 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~ 125 (833)
-|.+++..+++||++.+-. ...|.|.+..++ .|+|.|||+|||.+..+. +|...++ +
T Consensus 348 ~l~~il~NLl~NA~k~~~~--~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~------------if~~~~~-~----- 407 (457)
T PRK10364 348 RLTQVLLNLYLNAIQAIGQ--HGVISVTASESGAGVKISVTDSGKGIAADQLEA------------IFTPYFT-T----- 407 (457)
T ss_pred HHHHHHHHHHHHHHHhcCC--CCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHH------------HhCcccc-C-----
Confidence 3677788888888887533 456888877543 699999999999876543 4432221 1
Q ss_pred cceecCCcccccchhhhhcccce
Q psy13357 126 SYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 126 ~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
.++-+|+|++.|..+.+.+
T Consensus 408 ----k~~g~GlGL~iv~~~v~~~ 426 (457)
T PRK10364 408 ----KAEGTGLGLAVVHNIVEQH 426 (457)
T ss_pred ----CCCCCcccHHHHHHHHHHC
Confidence 1223899999999888764
No 62
>PRK10337 sensor protein QseC; Provisional
Probab=96.01 E-value=0.0094 Score=68.00 Aligned_cols=77 Identities=27% Similarity=0.406 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCeEEEEEecCCeEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCCccee
Q psy13357 50 LHHLVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKI 129 (833)
Q Consensus 50 L~hlv~EIVdNsiDE~~aG~~~~I~V~I~~DgsIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykv 129 (833)
++.++..+|+||+..+.. ...|.|.+..+ .|+|.|||.|||.+..+. +|...+.+.. ..
T Consensus 353 l~~vl~Nli~NA~k~~~~--~~~i~i~~~~~-~i~i~D~G~Gi~~~~~~~------------if~~f~~~~~------~~ 411 (449)
T PRK10337 353 LSLLVRNLLDNAIRYSPQ--GSVVDVTLNAR-NFTVRDNGPGVTPEALAR------------IGERFYRPPG------QE 411 (449)
T ss_pred HHHHHHHHHHHHHhhCCC--CCeEEEEEEee-EEEEEECCCCCCHHHHHH------------hcccccCCCC------CC
Confidence 555666677777666433 24578877654 799999999999775543 4433322111 11
Q ss_pred cCCcccccchhhhhcccce
Q psy13357 130 SGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 130 SgGlhGvG~svvNAlS~~~ 148 (833)
++| +|+|++.|..+.+..
T Consensus 412 ~~g-~GlGL~iv~~i~~~~ 429 (449)
T PRK10337 412 ATG-SGLGLSIVRRIAKLH 429 (449)
T ss_pred CCc-cchHHHHHHHHHHHc
Confidence 233 899999999988765
No 63
>PRK09303 adaptive-response sensory kinase; Validated
Probab=95.97 E-value=0.013 Score=66.29 Aligned_cols=80 Identities=26% Similarity=0.468 Sum_probs=51.2
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEe--cCC--eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIY--SDN--SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNK 124 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~--~Dg--sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd 124 (833)
-+.+++..+|+||+.....| ..|.|.+. .++ .|+|.|||.|||.+..+. +|........ +
T Consensus 272 ~l~qvl~NLl~NAik~~~~~--~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~------------iF~pf~~~~~-~- 335 (380)
T PRK09303 272 RIRQVLLNLLDNAIKYTPEG--GTITLSMLHRTTQKVQVSICDTGPGIPEEEQER------------IFEDRVRLPR-D- 335 (380)
T ss_pred HHHHHHHHHHHHHHhcCCCC--ceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHH------------HccCceeCCC-C-
Confidence 47788888888888865443 45777653 233 589999999999876543 4532222111 1
Q ss_pred CcceecCCcccccchhhhhcccce
Q psy13357 125 NSYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 125 ~~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
...+| .|+|+++|.-+.+.+
T Consensus 336 ---~~~~G-~GLGL~i~~~iv~~~ 355 (380)
T PRK09303 336 ---EGTEG-YGIGLSVCRRIVRVH 355 (380)
T ss_pred ---CCCCc-ccccHHHHHHHHHHc
Confidence 01123 899999988877644
No 64
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=95.95 E-value=0.021 Score=62.79 Aligned_cols=76 Identities=24% Similarity=0.334 Sum_probs=51.0
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecC-------------CeEEEEECCCCcccccccCCCCCCCCcceeeeeee
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSD-------------NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTE 115 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~D-------------gsIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~ 115 (833)
-|.+++..+++||++... .....|.|.+... -.|+|.|||.|||.+..+. +|..
T Consensus 237 ~l~~vl~nLl~NA~~~~~-~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~------------iF~~ 303 (348)
T PRK11073 237 QIEQVLLNIVRNALQALG-PEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDT------------LFYP 303 (348)
T ss_pred HHHHHHHHHHHHHHHHhc-cCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhh------------ccCC
Confidence 478888899999998753 2345677765431 1488999999999876543 4432
Q ss_pred ccccCCCCCCcceecCCcccccchhhhhcccc
Q psy13357 116 LHAGGKFNKNSYKISGGLHGIGLSCVNGLSRF 147 (833)
Q Consensus 116 LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~ 147 (833)
.++ ...+-+|+|+++|.-+.+.
T Consensus 304 ~~~----------~~~~g~GlGL~i~~~iv~~ 325 (348)
T PRK11073 304 MVS----------GREGGTGLGLSIARNLIDQ 325 (348)
T ss_pred ccc----------CCCCCccCCHHHHHHHHHH
Confidence 221 1123379999999887754
No 65
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=95.68 E-value=0.02 Score=64.95 Aligned_cols=77 Identities=19% Similarity=0.280 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCCc
Q psy13357 50 LHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNS 126 (833)
Q Consensus 50 L~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ 126 (833)
|..++..+++||+..+ ...|.|++..++ .|+|.|||.|||.+..+. +|...+.+.. .
T Consensus 332 l~~il~NLl~NA~k~~----~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~------------~~~~f~~~~~----~ 391 (435)
T PRK09467 332 IKRALANLVVNAARYG----NGWIKVSSGTEGKRAWFQVEDDGPGIPPEQLKH------------LFQPFTRGDS----A 391 (435)
T ss_pred HHHHHHHHHHHHHHhC----CCeEEEEEEecCCEEEEEEEecCCCcCHHHHHH------------hcCCcccCCC----C
Confidence 5667777777777653 456888887644 599999999999765543 4433222111 1
Q ss_pred ceecCCcccccchhhhhcccce
Q psy13357 127 YKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 127 ykvSgGlhGvG~svvNAlS~~~ 148 (833)
..+ +-+|+|++.|..+.+.+
T Consensus 392 -~~~-~g~GlGL~iv~~i~~~~ 411 (435)
T PRK09467 392 -RGS-SGTGLGLAIVKRIVDQH 411 (435)
T ss_pred -CCC-CCeehhHHHHHHHHHHC
Confidence 112 33899999999888654
No 66
>PRK09835 sensor kinase CusS; Provisional
Probab=95.50 E-value=0.027 Score=64.62 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=51.6
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecC--C-eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSD--N-SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKN 125 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~D--g-sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~ 125 (833)
-+.+++..+|+||+..+..| ..|.|.+..+ + .|+|.|||.|||.+..+. +|.....+. ..
T Consensus 375 ~l~~vl~nll~Na~~~~~~~--~~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~------------if~~f~~~~---~~ 437 (482)
T PRK09835 375 MLRRAISNLLSNALRYTPAG--EAITVRCQEVDHQVQLVVENPGTPIAPEHLPR------------LFDRFYRVD---PS 437 (482)
T ss_pred HHHHHHHHHHHHHHhcCCCC--CeEEEEEEEeCCEEEEEEEECCCCcCHHHHHH------------HhCCcccCC---CC
Confidence 47888888888888875433 4577777653 2 589999999999775542 443222211 11
Q ss_pred cceecCCcccccchhhhhcccce
Q psy13357 126 SYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 126 ~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
. ....+-+|+|++.|..+-+.+
T Consensus 438 ~-~~~~~g~GlGL~i~~~i~~~~ 459 (482)
T PRK09835 438 R-QRKGEGSGIGLAIVKSIVVAH 459 (482)
T ss_pred C-CCCCCCcchHHHHHHHHHHHC
Confidence 1 112233799999887776553
No 67
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=95.44 E-value=0.031 Score=65.77 Aligned_cols=51 Identities=20% Similarity=0.376 Sum_probs=41.6
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccccccC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKID 99 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~ 99 (833)
-|.+++--+|.||+|+--.---..|.|.+-.++ .|+|.|||+|||.+..+.
T Consensus 497 RLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~ 550 (603)
T COG4191 497 RLEQVLVNLLQNALDAMAGQEDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPH 550 (603)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHh
Confidence 388999999999999654444567999888755 799999999999987664
No 68
>PRK10815 sensor protein PhoQ; Provisional
Probab=95.43 E-value=0.023 Score=66.63 Aligned_cols=75 Identities=20% Similarity=0.359 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCeEEEEEecC-C--eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCCc
Q psy13357 50 LHHLVFEILDNAIDESLAGYCTKINVTIYSD-N--SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNS 126 (833)
Q Consensus 50 L~hlv~EIVdNsiDE~~aG~~~~I~V~I~~D-g--sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ 126 (833)
+..++..+++||+..+ ...|.|.+..+ + .|+|.|||.|||.+..+. +|...+.+.
T Consensus 379 l~~vl~NLi~NAik~~----~~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~------------iF~~f~~~~------ 436 (485)
T PRK10815 379 FMEVMGNVLDNACKYC----LEFVEISARQTDEHLHIVVEDDGPGIPESKREL------------IFDRGQRAD------ 436 (485)
T ss_pred HHHHHHHHHHHHHHhc----CCcEEEEEEEeCCEEEEEEEECCCCcCHHHHHH------------HhCCcccCC------
Confidence 5556666666666654 23466666543 3 589999999999876543 553322111
Q ss_pred ceecCCcccccchhhhhcccce
Q psy13357 127 YKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 127 ykvSgGlhGvG~svvNAlS~~~ 148 (833)
...+| +|+|+++|.-+.+..
T Consensus 437 -~~~~G-~GLGL~Ivk~iv~~~ 456 (485)
T PRK10815 437 -TLRPG-QGLGLSVAREITEQY 456 (485)
T ss_pred -CCCCC-cchhHHHHHHHHHHc
Confidence 11123 799999998887654
No 69
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=95.28 E-value=0.03 Score=68.65 Aligned_cols=82 Identities=18% Similarity=0.258 Sum_probs=54.1
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKN 125 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~ 125 (833)
-|..++..+++||++....+ ..|.|.+..++ .|+|.|||.|||.+..+. +|....++..-.
T Consensus 597 ~L~~il~NLI~NAik~s~~~--~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~------------IFe~F~t~~~~~-- 660 (703)
T TIGR03785 597 LIAQMLDKLVDNAREFSPED--GLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQ------------LFDSMVSVRDQG-- 660 (703)
T ss_pred HHHHHHHHHHHHHHHHCCCC--CeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHH------------HhCCCeecCCCC--
Confidence 47777888888888765433 44888877643 589999999999876653 554333322111
Q ss_pred cceecCCcccccchhhhhcccce
Q psy13357 126 SYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 126 ~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
...++-+|+|+++|.-+.+.+
T Consensus 661 --~~~~~g~GLGL~Ivr~Iv~~~ 681 (703)
T TIGR03785 661 --AQDQPHLGLGLYIVRLIADFH 681 (703)
T ss_pred --CCCCCCccHHHHHHHHHHHHc
Confidence 111223799999998888654
No 70
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=95.27 E-value=0.039 Score=67.27 Aligned_cols=76 Identities=16% Similarity=0.317 Sum_probs=52.3
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecC-C--eEEEEECCCCccccc-ccCCCCCCCCcceeeeeeeccccCCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSD-N--SISISDNGRGIPIDI-KIDDKHKPKRSAAEIVMTELHAGGKFNK 124 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~D-g--sIsV~DnGrGIPv~~-h~~~~~~~~~~~~E~Vft~LhAGgKFdd 124 (833)
-+.+++.++++||++....+ ..|.|.+..+ + .|+|.|||+|||.+. .+. +|...+++.
T Consensus 579 ~l~~vl~nLl~NAik~~~~~--~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~------------lF~pf~~~~---- 640 (679)
T TIGR02916 579 RLERVLGHLVQNALEATPGE--GRVAIRVERECGAARIEIEDSGCGMSPAFIRER------------LFKPFDTTK---- 640 (679)
T ss_pred HHHHHHHHHHHHHHHhCCCC--CcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHh------------cCCCCCCCC----
Confidence 47889999999999976432 4577877753 3 589999999999875 332 443222211
Q ss_pred CcceecCCcccccchhhhhcccce
Q psy13357 125 NSYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 125 ~~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
++-+|+|++.+.-+.+.+
T Consensus 641 ------~~G~GLGL~i~~~iv~~~ 658 (679)
T TIGR02916 641 ------GAGMGIGVYECRQYVEEI 658 (679)
T ss_pred ------CCCcchhHHHHHHHHHHc
Confidence 133799999988776543
No 71
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=95.27 E-value=0.029 Score=62.05 Aligned_cols=77 Identities=21% Similarity=0.323 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCCc
Q psy13357 50 LHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNS 126 (833)
Q Consensus 50 L~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ 126 (833)
+..++..+|+||+..+.. ...|.|.+..++ .|+|+|||.|||.+..+. +|..... ++
T Consensus 248 l~~il~nLi~NA~k~~~~--~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~------------if~~f~~---~~--- 307 (356)
T PRK10755 248 LRLLLRNLVENAHRYSPE--GSTITIKLSQEDGGAVLAVEDEGPGIDESKCGE------------LSKAFVR---MD--- 307 (356)
T ss_pred HHHHHHHHHHHHHhhCCC--CCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHH------------hCCCeEe---CC---
Confidence 566777777777766432 356888876543 589999999999876553 3322111 11
Q ss_pred ceecCCcccccchhhhhcccce
Q psy13357 127 YKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 127 ykvSgGlhGvG~svvNAlS~~~ 148 (833)
..++-.|+|++.|.-+.+.+
T Consensus 308 --~~~~g~GlGL~i~~~i~~~~ 327 (356)
T PRK10755 308 --SRYGGIGLGLSIVSRITQLH 327 (356)
T ss_pred --CCCCCcCHHHHHHHHHHHHC
Confidence 11233689999888777543
No 72
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=95.24 E-value=0.03 Score=65.07 Aligned_cols=46 Identities=33% Similarity=0.501 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCeEEEEEecC-C--eEEEEECCCCccccccc
Q psy13357 50 LHHLVFEILDNAIDESLAGYCTKINVTIYSD-N--SISISDNGRGIPIDIKI 98 (833)
Q Consensus 50 L~hlv~EIVdNsiDE~~aG~~~~I~V~I~~D-g--sIsV~DnGrGIPv~~h~ 98 (833)
+..+|.|.+-|++-++. ++.|+|+++.. | .++|+|||+|||...+|
T Consensus 482 lLqIvREAlsNa~KHa~---As~i~V~~~~~~g~~~~~VeDnG~Gi~~~~e~ 530 (574)
T COG3850 482 LLQIVREALSNAIKHAQ---ASEIKVTVSQNDGQVTLTVEDNGVGIDEAAEP 530 (574)
T ss_pred HHHHHHHHHHHHHHhcc---cCeEEEEEEecCCeEEEEEeeCCcCCCCccCC
Confidence 34668999999999984 78999998864 5 78999999999987655
No 73
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=95.20 E-value=0.026 Score=59.43 Aligned_cols=47 Identities=30% Similarity=0.512 Sum_probs=38.3
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCccccccc
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKI 98 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~ 98 (833)
-+.+++..+++||++... ...|.|.+..++ .++|.|||.|||.+..+
T Consensus 228 ~l~~vl~nLi~NAi~~~~---~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~ 277 (336)
T COG0642 228 RLRQVLVNLLSNAIKYTP---GGEITISVRQDDEQVTISVEDTGPGIPEEELE 277 (336)
T ss_pred HHHHHHHHHHHHHhccCC---CCeEEEEEEecCCeEEEEEEcCCCCCCHHHHH
Confidence 477788888888888765 578999988754 68999999999987644
No 74
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=95.07 E-value=0.037 Score=63.02 Aligned_cols=81 Identities=26% Similarity=0.296 Sum_probs=52.4
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKN 125 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~ 125 (833)
-|..++.+++.||+..+. ....|.|++..++ .|+|+|||.|||.+..+. +|.........+
T Consensus 368 ~l~~vl~nli~Na~~~~~--~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~------------i~~~~~~~~~~~-- 431 (475)
T PRK11100 368 LLRQALGNLLDNAIDFSP--EGGTITLSAEVDGEQVALSVEDQGPGIPDYALPR------------IFERFYSLPRPA-- 431 (475)
T ss_pred HHHHHHHHHHHHHHHhCC--CCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHH------------HHHHHccCCCCC--
Confidence 366777888888887642 2357888887543 599999999999765443 443322221111
Q ss_pred cceecCCcccccchhhhhcccce
Q psy13357 126 SYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 126 ~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
...+-+|+|+..|+-+.+.+
T Consensus 432 ---~~~~~~GlGL~i~~~~~~~~ 451 (475)
T PRK11100 432 ---NGRKSTGLGLAFVREVARLH 451 (475)
T ss_pred ---CCCCCcchhHHHHHHHHHHC
Confidence 11233799999999888654
No 75
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=95.04 E-value=0.041 Score=59.02 Aligned_cols=82 Identities=23% Similarity=0.235 Sum_probs=53.1
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecC-C--eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSD-N--SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKN 125 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~D-g--sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~ 125 (833)
-|..++.+++.||++..-. ...|.|.+..+ + .++|.|||.|||.+..+. +|.......+
T Consensus 229 ~l~~vl~nll~Nai~~~~~--~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~------------if~~~~~~~~---- 290 (333)
T TIGR02966 229 ELRSAFSNLVSNAIKYTPE--GGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPR------------LTERFYRVDK---- 290 (333)
T ss_pred HHHHHHHHHHHHhheeCCC--CCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhh------------hccCceecCc----
Confidence 4778889999999887543 35677777643 2 589999999999886653 4433322111
Q ss_pred cceecCCcccccchhhhhcccce
Q psy13357 126 SYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 126 ~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
......+-.|+|++.++-+.+.+
T Consensus 291 ~~~~~~~g~glGL~~~~~~~~~~ 313 (333)
T TIGR02966 291 SRSRDTGGTGLGLAIVKHVLSRH 313 (333)
T ss_pred ccccCCCCCcccHHHHHHHHHHC
Confidence 01111223699999988877543
No 76
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=95.02 E-value=0.037 Score=69.13 Aligned_cols=77 Identities=21% Similarity=0.433 Sum_probs=52.7
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKN 125 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~ 125 (833)
-|.+++..+|.||+.....| .|.|.+..++ .|+|.|||.|||.+..+. +|.....+.
T Consensus 513 ~l~~il~NLl~NAik~~~~g---~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~------------if~~f~~~~----- 572 (921)
T PRK15347 513 RLRQILVNLLGNAVKFTETG---GIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQ------------IFTPFYQAD----- 572 (921)
T ss_pred HHHHHHHHHHHHHhhcCCCC---CEEEEEEEcCCEEEEEEEEcCCCCCHHHHHH------------HhcCcccCC-----
Confidence 37788888888888865443 4777776543 589999999999876543 453322211
Q ss_pred cceecCCcccccchhhhhcccce
Q psy13357 126 SYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 126 ~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
...|-.|+|+++|+-+.+.+
T Consensus 573 ---~~~~g~GLGL~i~~~~~~~~ 592 (921)
T PRK15347 573 ---THSQGTGLGLTIASSLAKMM 592 (921)
T ss_pred ---CCCCCCchHHHHHHHHHHHc
Confidence 11233799999999888665
No 77
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=94.92 E-value=0.039 Score=69.05 Aligned_cols=78 Identities=18% Similarity=0.277 Sum_probs=53.4
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKN 125 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~ 125 (833)
-|..++..+|+||+..... ..|.|.+..++ .|+|.|||+|||.+..+. +|.......
T Consensus 561 ~l~qil~NLl~NAik~~~~---g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~------------if~~f~~~~----- 620 (914)
T PRK11466 561 RIRQVITNLLSNALRFTDE---GSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAE------------IFQPFVQVS----- 620 (914)
T ss_pred HHHHHHHHHHHHHHHhCCC---CeEEEEEEEcCCEEEEEEEECCCCCCHHHHHH------------HhchhhcCC-----
Confidence 3777888888888886533 36888777654 589999999999876543 443222110
Q ss_pred cceecCCcccccchhhhhccccee
Q psy13357 126 SYKISGGLHGIGLSCVNGLSRFLQ 149 (833)
Q Consensus 126 ~ykvSgGlhGvG~svvNAlS~~~~ 149 (833)
...|-+|+|+++|.-+.+.+.
T Consensus 621 ---~~~~g~GLGL~i~~~l~~~~g 641 (914)
T PRK11466 621 ---GKRGGTGLGLTISSRLAQAMG 641 (914)
T ss_pred ---CCCCCCcccHHHHHHHHHHcC
Confidence 112347999999998887764
No 78
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=94.77 E-value=0.078 Score=62.43 Aligned_cols=43 Identities=21% Similarity=0.431 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccc
Q psy13357 50 LHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPID 95 (833)
Q Consensus 50 L~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~ 95 (833)
+.+++.|+++||+..+. ++.|.|++..++ .++|.|||.|||.+
T Consensus 411 L~ril~nlL~NAiKha~---~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 411 LFRVCQEGLNNIVKHAD---ASAVTLQGWQQDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHHHHhCC---CCEEEEEEEEcCCEEEEEEEECCCCCCcC
Confidence 66788888899888763 356888877543 58999999999853
No 79
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=94.59 E-value=0.079 Score=61.74 Aligned_cols=76 Identities=25% Similarity=0.375 Sum_probs=50.3
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEec--CC--eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYS--DN--SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNK 124 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~--Dg--sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd 124 (833)
-|..++.++++||+..+.. ...|.|.+.. ++ .|+|.|||+|||.+.... +|-...
T Consensus 500 ~l~~~~~nli~na~~~~~~--~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~------------~f~~~~------- 558 (607)
T PRK11360 500 LLKQVLLNILINAVQAISA--RGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKK------------IFDPFF------- 558 (607)
T ss_pred HHHHHHHHHHHHHHHHhcC--CCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhh------------hcCCce-------
Confidence 3777888888888886543 3467777653 22 699999999999875432 332111
Q ss_pred CcceecCCcccccchhhhhcccce
Q psy13357 125 NSYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 125 ~~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
....+-.|+|+..++-+-+.+
T Consensus 559 ---~~~~~g~glGL~~~~~~~~~~ 579 (607)
T PRK11360 559 ---TTKAKGTGLGLALSQRIINAH 579 (607)
T ss_pred ---eCCCCCCchhHHHHHHHHHHc
Confidence 111233799999998877654
No 80
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=94.37 E-value=0.063 Score=67.03 Aligned_cols=76 Identities=18% Similarity=0.375 Sum_probs=51.9
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecC---------------C---eEEEEECCCCcccccccCCCCCCCCccee
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSD---------------N---SISISDNGRGIPIDIKIDDKHKPKRSAAE 110 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~D---------------g---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E 110 (833)
-|.+++..+++||+...-.+ ..|.|++..+ + .|+|.|||+|||.+..+.
T Consensus 560 ~L~qvl~NLl~NAik~~~~~--g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~----------- 626 (828)
T PRK13837 560 ELQQVLMNLCSNAAQAMDGA--GRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPH----------- 626 (828)
T ss_pred HHHHHHHHHHHHHHHHcccC--CeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHH-----------
Confidence 47788888888888875433 4566666532 2 589999999999876543
Q ss_pred eeeeeccccCCCCCCcceecCCcccccchhhhhcccce
Q psy13357 111 IVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 111 ~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
+|...+++. . +-.|+|+++|..+.+.+
T Consensus 627 -iFe~F~~~~--------~--~G~GLGL~i~~~iv~~~ 653 (828)
T PRK13837 627 -IFEPFFTTR--------A--GGTGLGLATVHGIVSAH 653 (828)
T ss_pred -hhCCcccCC--------C--CCCcchHHHHHHHHHHC
Confidence 553332211 1 33799999988877665
No 81
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=94.18 E-value=0.17 Score=60.33 Aligned_cols=43 Identities=30% Similarity=0.557 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccc
Q psy13357 50 LHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPID 95 (833)
Q Consensus 50 L~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~ 95 (833)
+.+++.|+|.||+-.+. ++.|.|.+..++ .++|.|||.|||.+
T Consensus 470 l~~il~ell~NA~kha~---a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 470 LLQIAREALSNALKHAQ---ASEVVVTVAQNQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred HHHHHHHHHHHHHHhCC---CCeEEEEEEEcCCEEEEEEEECCCCCCcc
Confidence 56778888888887763 356888876543 58999999999854
No 82
>PRK10490 sensor protein KdpD; Provisional
Probab=94.04 E-value=0.086 Score=66.51 Aligned_cols=80 Identities=21% Similarity=0.383 Sum_probs=54.1
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKN 125 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~ 125 (833)
-|.+++..+|+||+...-. ...|.|.+..++ .|+|.|||.|||.+..+. +|...+.+.+ .
T Consensus 778 ~L~qVL~NLL~NAik~s~~--g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~------------IFepF~~~~~-~-- 840 (895)
T PRK10490 778 LFERVLINLLENAVKYAGA--QAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQL------------IFDKFARGNK-E-- 840 (895)
T ss_pred HHHHHHHHHHHHHHHhCCC--CCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHH------------hcCCCccCCC-C--
Confidence 4778888888888887533 356777776543 589999999999876553 6644333221 1
Q ss_pred cceecCCcccccchhhhhcccce
Q psy13357 126 SYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 126 ~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
....| .|+|+++|..+.+.+
T Consensus 841 --~~~~G-~GLGL~Ivk~ive~h 860 (895)
T PRK10490 841 --SAIPG-VGLGLAICRAIVEVH 860 (895)
T ss_pred --CCCCC-ccHHHHHHHHHHHHc
Confidence 11123 799999998887654
No 83
>PRK13560 hypothetical protein; Provisional
Probab=93.85 E-value=0.16 Score=62.01 Aligned_cols=46 Identities=24% Similarity=0.492 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHhhhcCC-CCCeEEEEEecC--C--eEEEEECCCCcccc
Q psy13357 50 LHHLVFEILDNAIDESLAG-YCTKINVTIYSD--N--SISISDNGRGIPID 95 (833)
Q Consensus 50 L~hlv~EIVdNsiDE~~aG-~~~~I~V~I~~D--g--sIsV~DnGrGIPv~ 95 (833)
+..++.+++.||+..+..+ ....|.|.+... + .|+|.|||.|||.+
T Consensus 712 ~~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 712 CGLIISELLSNALKHAFPDGAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred hHHHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 4568899999999987643 456788888754 3 58999999999965
No 84
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=93.65 E-value=0.1 Score=58.63 Aligned_cols=47 Identities=32% Similarity=0.469 Sum_probs=38.8
Q ss_pred CchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccccc
Q psy13357 48 TGLHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIK 97 (833)
Q Consensus 48 ~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h 97 (833)
..|..++.|.|.|++=++ .++++.|++..++ .++|.|||+|.+++..
T Consensus 278 ~~l~rivQEaltN~~rHa---~A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~~ 327 (365)
T COG4585 278 DALFRIVQEALTNAIRHA---QATEVRVTLERTDDELRLEVIDNGVGFDPDKE 327 (365)
T ss_pred HHHHHHHHHHHHHHHhcc---CCceEEEEEEEcCCEEEEEEEECCcCCCcccc
Confidence 358899999999998887 5788889888643 6899999999998743
No 85
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=93.56 E-value=0.089 Score=66.22 Aligned_cols=82 Identities=18% Similarity=0.355 Sum_probs=54.6
Q ss_pred CchhHHHHHHHHHHHhhhcCCCCCeEEEEEe--cCC--eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCC
Q psy13357 48 TGLHHLVFEILDNAIDESLAGYCTKINVTIY--SDN--SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFN 123 (833)
Q Consensus 48 ~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~--~Dg--sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFd 123 (833)
.-|..++..+|+||+.....| .|.|.+. .++ .|+|.|+|.|||.+..+. +|.....+. .
T Consensus 578 ~~l~~il~nLi~NAik~~~~g---~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~------------if~~f~~~~--~ 640 (968)
T TIGR02956 578 PRIRQVLINLVGNAIKFTDRG---SVVLRVSLNDDSSLLFEVEDTGCGIAEEEQAT------------LFDAFTQAD--G 640 (968)
T ss_pred HHHHHHHHHHHHHHHhhCCCC---eEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHH------------HHhhhhccC--C
Confidence 358889999999999875433 4666554 333 489999999999876543 553333222 1
Q ss_pred CCcceecCCcccccchhhhhcccceeE
Q psy13357 124 KNSYKISGGLHGIGLSCVNGLSRFLQL 150 (833)
Q Consensus 124 d~~ykvSgGlhGvG~svvNAlS~~~~V 150 (833)
. ..+ |-.|+|+++|.-+.+.+-.
T Consensus 641 ~---~~~-~g~GLGL~i~~~l~~~~gG 663 (968)
T TIGR02956 641 R---RRS-GGTGLGLAISQRLVEAMDG 663 (968)
T ss_pred C---CCC-CCccHHHHHHHHHHHHcCC
Confidence 0 111 3379999999988877643
No 86
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=93.37 E-value=0.29 Score=61.73 Aligned_cols=81 Identities=23% Similarity=0.328 Sum_probs=53.6
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEec--C--C--eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYS--D--N--SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKF 122 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~--D--g--sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKF 122 (833)
-|.+++.-+|.||+.....| .|.|.+.. + + .|+|.|+|.|||.+..+. +|...... +-
T Consensus 565 ~L~QVL~NLL~NAik~t~~G---~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~------------IFePF~t~-~~ 628 (894)
T PRK10618 565 ALRKILLLLLNYAITTTAYG---KITLEVDQDESSPDRLTIRILDTGAGVSIKELDN------------LHFPFLNQ-TQ 628 (894)
T ss_pred HHHHHHHHHHHHHHHhCCCC---eEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHH------------hcCccccC-CC
Confidence 48889999999999865333 56666653 2 2 589999999999886653 44332221 11
Q ss_pred CCCcceecCCcccccchhhhhccccee
Q psy13357 123 NKNSYKISGGLHGIGLSCVNGLSRFLQ 149 (833)
Q Consensus 123 dd~~ykvSgGlhGvG~svvNAlS~~~~ 149 (833)
. ...++-.|+|+++|.-+.+.+.
T Consensus 629 ~----~~~~~GtGLGLaI~k~Lve~~G 651 (894)
T PRK10618 629 G----DRYGKASGLTFFLCNQLCRKLG 651 (894)
T ss_pred C----CCCCCCcChhHHHHHHHHHHcC
Confidence 1 1122237999999998887763
No 87
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=93.36 E-value=0.11 Score=64.09 Aligned_cols=82 Identities=20% Similarity=0.329 Sum_probs=53.3
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecC--C--eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSD--N--SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNK 124 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~D--g--sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd 124 (833)
-|.+++..+++||++.... ..|.|.+..+ + .++|.|||.|||.+..+. +|........ .
T Consensus 398 ~l~qvl~NLl~NAik~~~~---g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~------------iF~~f~~~~~--~ 460 (779)
T PRK11091 398 RLRQILWNLISNAVKFTQQ---GGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDK------------IFAMYYQVKD--S 460 (779)
T ss_pred HHHHHHHHHHHHHHHhCCC---CcEEEEEEEccCCEEEEEEEecCCCCCHHHHHH------------HHHHhhcccC--C
Confidence 4888999999999987633 3466665543 2 689999999999876653 5543333210 0
Q ss_pred CcceecCCcccccchhhhhcccce
Q psy13357 125 NSYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 125 ~~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
..-.. +|-.|+|+++|.-+-+.+
T Consensus 461 ~~~~~-~~GtGLGL~i~~~iv~~~ 483 (779)
T PRK11091 461 HGGKP-ATGTGIGLAVSKRLAQAM 483 (779)
T ss_pred CCCCC-CCCcchHHHHHHHHHHHc
Confidence 01111 233799999988887665
No 88
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=93.24 E-value=0.11 Score=56.97 Aligned_cols=58 Identities=31% Similarity=0.543 Sum_probs=40.0
Q ss_pred CCeeeecCCCcCchhHHHHHHHHHHHhhhcCCCC-----------CeEEEEEecC-----CeEEEEECCCCcccccccC
Q psy13357 37 PEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYC-----------TKINVTIYSD-----NSISISDNGRGIPIDIKID 99 (833)
Q Consensus 37 PgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG~~-----------~~I~V~I~~D-----gsIsV~DnGrGIPv~~h~~ 99 (833)
|..| |+.+ -|...|+-+|-||+.+. ++.+ +.+.++|+.. -.+.|.|||+|||.+..+.
T Consensus 233 P~v~-~d~D---qliQv~LNlVrNAaqA~-~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~ 306 (363)
T COG3852 233 PEVL-GDRD---QLIQVFLNLVRNAAQAL-GGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDH 306 (363)
T ss_pred cccc-CCHH---HHHHHHHHHHHHHHHHh-cCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhh
Confidence 5566 5544 38999999999999754 3211 2245555531 1688999999999987764
No 89
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=93.15 E-value=0.45 Score=47.23 Aligned_cols=84 Identities=24% Similarity=0.224 Sum_probs=57.4
Q ss_pred chhHHHHHHHHHHHhhhcCCCC----CeEEEEEecCC-eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYC----TKINVTIYSDN-SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFN 123 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~----~~I~V~I~~Dg-sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFd 123 (833)
-+...+.|.+.|+|-.+.++-. -.|.++++.+. .|+|+|.|.||+.-.- .+...
T Consensus 40 ~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~~~~i~i~D~G~~~~~~~~--------------~~~~~------- 98 (146)
T COG2172 40 DLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDGKLEIRIWDQGPGIEDLEE--------------SLGPG------- 98 (146)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCCeEEEEEEeCCCCCCCHHH--------------hcCCC-------
Confidence 3678899999999999987433 34555555444 6999999988763211 11111
Q ss_pred CCcceecCCc--ccccchhhhhcccceeEEEEeCC
Q psy13357 124 KNSYKISGGL--HGIGLSCVNGLSRFLQLTINRNK 156 (833)
Q Consensus 124 d~~ykvSgGl--hGvG~svvNAlS~~~~Vev~r~G 156 (833)
|...+++ .|+|+.++.-+...|+++...+|
T Consensus 99 ---~~~~~~~~~~G~Gl~l~~~~~D~~~~~~~~~~ 130 (146)
T COG2172 99 ---DTTAEGLQEGGLGLFLAKRLMDEFSYERSEDG 130 (146)
T ss_pred ---CCCCcccccccccHHHHhhhheeEEEEeccCC
Confidence 2223333 48999999999999999877776
No 90
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=92.78 E-value=0.093 Score=66.43 Aligned_cols=81 Identities=23% Similarity=0.372 Sum_probs=52.1
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecC-C--eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSD-N--SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKN 125 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~D-g--sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~ 125 (833)
-|.+++..+|+||+.....| .|.|.+..+ + .|+|.|+|.|||.+..+. +|........
T Consensus 562 ~L~qvl~NLl~NAik~t~~G---~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~------------lFepF~~~~~---- 622 (924)
T PRK10841 562 RLQQVISNLLSNAIKFTDTG---CIVLHVRVDGDYLSFRVRDTGVGIPAKEVVR------------LFDPFFQVGT---- 622 (924)
T ss_pred HHHHHHHHHHHHHHhhCCCC---cEEEEEEEeCCEEEEEEEEcCcCCCHHHHHH------------HhcccccCCC----
Confidence 37788888999998875443 466655543 3 588999999999875543 4433322211
Q ss_pred cceecCCcccccchhhhhcccce
Q psy13357 126 SYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 126 ~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
......+-.|+|+++|.-+.+.+
T Consensus 623 ~~~~~~~GtGLGL~I~k~lv~~~ 645 (924)
T PRK10841 623 GVQRNFQGTGLGLAICEKLINMM 645 (924)
T ss_pred CCCCCCCCeehhHHHHHHHHHHC
Confidence 11111223799999999887665
No 91
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=92.54 E-value=0.16 Score=63.41 Aligned_cols=82 Identities=22% Similarity=0.348 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCeEEEEEec--CC----eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCC
Q psy13357 50 LHHLVFEILDNAIDESLAGYCTKINVTIYS--DN----SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFN 123 (833)
Q Consensus 50 L~hlv~EIVdNsiDE~~aG~~~~I~V~I~~--Dg----sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFd 123 (833)
|..++..+|+||+.....|. -.|.|.+.. ++ .|+|.|||.|||.+..+. +|-....+.
T Consensus 409 l~~vl~NLl~NAik~~~~g~-v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~------------if~~f~~~~--- 472 (919)
T PRK11107 409 LQQIITNLVGNAIKFTESGN-IDILVELRALSNTKVQLEVQIRDTGIGISERQQSQ------------LFQAFRQAD--- 472 (919)
T ss_pred HHHHHHHHHHHHhhcCCCCc-EEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHH------------HhhhhccCC---
Confidence 67788888888887654432 133443332 22 489999999999875543 443222111
Q ss_pred CCcceecCCcccccchhhhhcccce
Q psy13357 124 KNSYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 124 d~~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
.+.....|-.|+|+++|.-+.+.+
T Consensus 473 -~~~~~~~~g~GLGL~i~~~i~~~~ 496 (919)
T PRK11107 473 -ASISRRHGGTGLGLVITQKLVNEM 496 (919)
T ss_pred -CCCCCCCCCcchhHHHHHHHHHHh
Confidence 111111234899999988877654
No 92
>PRK10547 chemotaxis protein CheA; Provisional
Probab=92.39 E-value=0.21 Score=60.93 Aligned_cols=43 Identities=16% Similarity=0.388 Sum_probs=32.0
Q ss_pred HHHHHHHHhhhcC--------C--CCCeEEEEEecCC---eEEEEECCCCcccccc
Q psy13357 55 FEILDNAIDESLA--------G--YCTKINVTIYSDN---SISISDNGRGIPIDIK 97 (833)
Q Consensus 55 ~EIVdNsiDE~~a--------G--~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h 97 (833)
..+|.||+|.... | ....|.|....+| .|+|.|||+|||.+..
T Consensus 391 ~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i 446 (670)
T PRK10547 391 THLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERI 446 (670)
T ss_pred HHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHH
Confidence 4789999998643 1 2346888877544 5899999999997643
No 93
>PRK13557 histidine kinase; Provisional
Probab=92.39 E-value=0.34 Score=56.15 Aligned_cols=78 Identities=27% Similarity=0.423 Sum_probs=50.8
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEe----------------cCC--eEEEEECCCCcccccccCCCCCCCCccee
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIY----------------SDN--SISISDNGRGIPIDIKIDDKHKPKRSAAE 110 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~----------------~Dg--sIsV~DnGrGIPv~~h~~~~~~~~~~~~E 110 (833)
-|.+++..++.||++....+ ..|.|... .++ .|+|.|||+|||.+..+.
T Consensus 277 ~l~~vl~nll~NA~~~~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~----------- 343 (540)
T PRK13557 277 QAEVALLNVLINARDAMPEG--GRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILAR----------- 343 (540)
T ss_pred HHHHHHHHHHHHHHHhcccC--CeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHh-----------
Confidence 47788999999999876543 34555543 122 589999999999876553
Q ss_pred eeeeeccccCCCCCCcceecCCcccccchhhhhcccce
Q psy13357 111 IVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 111 ~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
+|...++.. ..++--|+|+++|.-+-+.+
T Consensus 344 -if~~~~~~~--------~~~~g~GlGL~i~~~~v~~~ 372 (540)
T PRK13557 344 -VMDPFFTTK--------EEGKGTGLGLSMVYGFAKQS 372 (540)
T ss_pred -ccCCCcccC--------CCCCCCCccHHHHHHHHHHC
Confidence 554433321 11223588888887666554
No 94
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=92.22 E-value=0.23 Score=64.32 Aligned_cols=83 Identities=19% Similarity=0.367 Sum_probs=52.2
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEE---ecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTI---YSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKF 122 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I---~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKF 122 (833)
-|.+++..+|+||++....|. -.|.+.. ..++ .|+|.|||.|||.+..+. +|.....+ +.
T Consensus 828 ~l~qvl~NLl~NAik~~~~g~-i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~------------iF~~f~~~-~~ 893 (1197)
T PRK09959 828 AFKQVLSNLLSNALKFTTEGA-VKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQ------------LFKRYSQT-SA 893 (1197)
T ss_pred HHHHHHHHHHHHHHHhCCCCC-EEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHH------------hhcccccc-cc
Confidence 488999999999999765442 2333322 1222 478999999999876543 45333222 11
Q ss_pred CCCcceecCCcccccchhhhhcccceeE
Q psy13357 123 NKNSYKISGGLHGIGLSCVNGLSRFLQL 150 (833)
Q Consensus 123 dd~~ykvSgGlhGvG~svvNAlS~~~~V 150 (833)
. ...+| +|+|+++|.-+.+.+..
T Consensus 894 ~----~~~~G-~GLGL~i~~~iv~~~gG 916 (1197)
T PRK09959 894 G----RQQTG-SGLGLMICKELIKNMQG 916 (1197)
T ss_pred C----CCCCC-cCchHHHHHHHHHHcCC
Confidence 1 11223 89999999888876643
No 95
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=92.10 E-value=0.2 Score=59.32 Aligned_cols=79 Identities=30% Similarity=0.419 Sum_probs=54.1
Q ss_pred eecCCCcCchhHHHHHHHHHHHhhhcC-----CCCCeEEEEEec-CC--eEEEEECCCCcccccccCCCCCCCCcceeee
Q psy13357 41 IGDTSDGTGLHHLVFEILDNAIDESLA-----GYCTKINVTIYS-DN--SISISDNGRGIPIDIKIDDKHKPKRSAAEIV 112 (833)
Q Consensus 41 IGst~~~~GL~hlv~EIVdNsiDE~~a-----G~~~~I~V~I~~-Dg--sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~V 112 (833)
+|.-|. +-|.+.+.-++-||.++..+ +....|.++.+. || .+.|.|||.|.|.+.... +.|-.
T Consensus 593 ~~~~D~-~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r--------~~EPY 663 (712)
T COG5000 593 IGMADA-TLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHR--------ALEPY 663 (712)
T ss_pred eeecCH-HHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhh--------hccCc
Confidence 444455 67889999999999887653 223367888774 66 688999999999886532 45555
Q ss_pred eeeccccCCCCCCcceecCCcccccchhhh
Q psy13357 113 MTELHAGGKFNKNSYKISGGLHGIGLSCVN 142 (833)
Q Consensus 113 ft~LhAGgKFdd~~ykvSgGlhGvG~svvN 142 (833)
+|.--.| -|+|+.+|-
T Consensus 664 vTtr~KG--------------TGLGLAiVK 679 (712)
T COG5000 664 VTTREKG--------------TGLGLAIVK 679 (712)
T ss_pred eeccccc--------------ccccHHHHH
Confidence 5533222 378888763
No 96
>PRK13559 hypothetical protein; Provisional
Probab=91.83 E-value=0.54 Score=52.05 Aligned_cols=46 Identities=20% Similarity=0.246 Sum_probs=33.8
Q ss_pred chhHHHHHHHHHHHhhhc-CCCCCeEEEEE--ec-CC--eEEEEECCCCccc
Q psy13357 49 GLHHLVFEILDNAIDESL-AGYCTKINVTI--YS-DN--SISISDNGRGIPI 94 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~-aG~~~~I~V~I--~~-Dg--sIsV~DnGrGIPv 94 (833)
.|..++.|++.||+..+. ......|.|.+ .. ++ .|+|.|||.|+|.
T Consensus 267 ~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~ 318 (361)
T PRK13559 267 PLGLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPP 318 (361)
T ss_pred HHHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCC
Confidence 478899999999998742 22346788888 33 33 6888999988764
No 97
>cd00188 TOPRIM Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA, type IIA and type IIB topoisomerases, bacterial DnaG-type primases, small primase-like proteins from bacteria and archaea, OLD family nucleases from bacterial and archaea, and bacterial DNA repair proteins of the RecR/M family. This domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases and in strand joining in topoisomerases and, as a general acid in strand cleavage by topisomerases and nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=91.49 E-value=0.43 Score=40.19 Aligned_cols=71 Identities=37% Similarity=0.411 Sum_probs=48.9
Q ss_pred EEEEeecCCCccccccccCCcceeecccCcccccccccchhHhhccHhHHHHHHHhCCCCCCCCCCcCCCCCCceeeccC
Q psy13357 453 ELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTD 532 (833)
Q Consensus 453 eLflvEGDSAgGsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li~alG~g~~~~~~~~~~LRY~kIiImTD 532 (833)
.++||||++-.-+..+.... ...++++.|+..+ .-...+...++. +.+|+|++|
T Consensus 2 ~viivEg~~d~~~l~~~~~~-~~~~~~~~G~~~~------------~~~~~~~~~~~~-------------~~~v~i~~D 55 (83)
T cd00188 2 KLIIVEGPSDALALAQAGGY-GGAVVALGGHALN------------KTRELLKRLLGE-------------AKEVIIATD 55 (83)
T ss_pred EEEEEecHHHHHHHHHHcCC-CEEEEEEccEEcH------------HHHHHHHHHhcC-------------CCEEEEEcC
Confidence 58999999988777666554 3578899998776 222223333221 678999999
Q ss_pred CCCCchhHHHHHHHHHH
Q psy13357 533 ADIDGAHIRALLLTFFY 549 (833)
Q Consensus 533 ADvDGsHI~~Llltff~ 549 (833)
.|..|..+...+.....
T Consensus 56 ~D~~g~~~~~~~~~~~~ 72 (83)
T cd00188 56 ADREGEAIALRLLELLK 72 (83)
T ss_pred CChhHHHHHHHHHHHHH
Confidence 99999966665555443
No 98
>KOG0787|consensus
Probab=89.94 E-value=0.41 Score=53.79 Aligned_cols=105 Identities=23% Similarity=0.299 Sum_probs=67.6
Q ss_pred ccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCC-----C-CCeEEEEEec---CCeEEEEECCCCcccccc
Q psy13357 27 LEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAG-----Y-CTKINVTIYS---DNSISISDNGRGIPIDIK 97 (833)
Q Consensus 27 LeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG-----~-~~~I~V~I~~---DgsIsV~DnGrGIPv~~h 97 (833)
|.--++.-++|+.|| + .=|+|++.|+.-||.-+.++- . -..|+|++-. |-+|.|.|-|-|||-+..
T Consensus 243 l~i~~~~a~~~~vyv----P-shL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~ 317 (414)
T KOG0787|consen 243 LIIEGHNALSFTVYV----P-SHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDEDLLIKISDRGGGVPHRDI 317 (414)
T ss_pred eEecCcccccCcccc----c-hHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcceEEEEecCCCCcChhHH
Confidence 333445566676776 3 569999999999999887742 2 3458888765 348999999999997755
Q ss_pred cCCCCCCCCcceeeeeeeccccCC---CCCC-cceecCCcccccchhhhhcccceeE
Q psy13357 98 IDDKHKPKRSAAEIVMTELHAGGK---FNKN-SYKISGGLHGIGLSCVNGLSRFLQL 150 (833)
Q Consensus 98 ~~~~~~~~~~~~E~Vft~LhAGgK---Fdd~-~ykvSgGlhGvG~svvNAlS~~~~V 150 (833)
+. +|.-..+... -|+. .-..+| -|.|++..-++.++|.-
T Consensus 318 dr------------lf~Y~ySTa~~~~~d~~~~~plaG--fG~GLPisrlYa~yf~G 360 (414)
T KOG0787|consen 318 DR------------LFSYMYSTAPAPSSDNNRTAPLAG--FGFGLPISRLYARYFGG 360 (414)
T ss_pred HH------------HHhhhcccCCCCCCCCCCcCcccc--cccCCcHHHHHHHHhCC
Confidence 42 3322222211 1111 112222 47889999999988743
No 99
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=88.19 E-value=0.75 Score=51.60 Aligned_cols=44 Identities=23% Similarity=0.523 Sum_probs=38.6
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecCCe---EEEEECCCCcccc
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSDNS---ISISDNGRGIPID 95 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dgs---IsV~DnGrGIPv~ 95 (833)
-|+.++.|.+.|-+-.|. ++.|+|.++.++. .+|.|||.|+|.+
T Consensus 410 TLyRl~QE~LNNI~KHA~---AS~V~i~l~~~~e~l~Lei~DdG~Gl~~~ 456 (497)
T COG3851 410 TLYRLCQELLNNICKHAD---ASAVTIQLWQQDERLMLEIEDDGSGLPPG 456 (497)
T ss_pred eHHHHHHHHHHHHHhccc---cceEEEEEeeCCcEEEEEEecCCcCCCCC
Confidence 489999999999998884 6889999998774 7899999999987
No 100
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=87.64 E-value=0.43 Score=53.29 Aligned_cols=92 Identities=25% Similarity=0.367 Sum_probs=58.2
Q ss_pred hhhhCCC--eeeecCCCcCchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCC
Q psy13357 32 AVRKRPE--MYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKR 106 (833)
Q Consensus 32 ~VRkRPg--MYIGst~~~~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~ 106 (833)
.||+-|. .|+- .|+ .-+.+++.-|+.||+-=.-+ ..+|.|.+..-+ .|||.|.|-|||-...++
T Consensus 325 ~vR~~p~~~~~ve-iD~-DK~tQVldNii~NA~KYsP~--Gg~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~------- 393 (459)
T COG5002 325 FVRDIPKQDIWVE-IDP-DKMTQVLDNIISNALKYSPD--GGRITVSVKQRETWVEISISDQGLGIPKEDLEK------- 393 (459)
T ss_pred HHhcCCCCceEEE-eCh-hHHHHHHHHHHHHHhhcCCC--CCeEEEEEeeeCcEEEEEEccCCCCCCchhHHH-------
Confidence 5777774 3432 222 34666666666666654434 467888887644 699999999999876664
Q ss_pred cceeeeeeeccccCCCCCCcceecCCcccccchhhhh
Q psy13357 107 SAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNG 143 (833)
Q Consensus 107 ~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNA 143 (833)
+|-...-..| +-.-++|--|+|++.+--
T Consensus 394 -----iFdrfyRvdk----ARsR~~gGTGLGLaIake 421 (459)
T COG5002 394 -----IFDRFYRVDK----ARSRKMGGTGLGLAIAKE 421 (459)
T ss_pred -----HHHHHhhhhh----hhhhcCCCCchhHHHHHH
Confidence 7754444333 223356668999887643
No 101
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=86.96 E-value=1.5 Score=48.80 Aligned_cols=66 Identities=24% Similarity=0.333 Sum_probs=46.2
Q ss_pred hhhhhhCCCeeeecCCCc----------CchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCccccc
Q psy13357 30 LEAVRKRPEMYIGDTSDG----------TGLHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDI 96 (833)
Q Consensus 30 lE~VRkRPgMYIGst~~~----------~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~ 96 (833)
++..+.||||-|---..+ ..|+.++.|.+.|-=-.+ .+++|.|-+..++ ..+|.|||+|.|+..
T Consensus 330 ~~~f~~~tg~~itle~~~~p~~l~~e~~talyRv~QEaltNIErHa---~Atrv~ill~~~~d~vql~vrDnG~GF~~~~ 406 (459)
T COG4564 330 LEDFKERTGIEITLEFDTQPGKLKPEVATALYRVVQEALTNIERHA---GATRVTILLQQMGDMVQLMVRDNGVGFSVKE 406 (459)
T ss_pred HHHhhhccCeEEEEEecCCcccCCcHHHHHHHHHHHHHHHHHHhhc---CCeEEEEEeccCCcceEEEEecCCCCccchh
Confidence 355668999987543221 246777777776643332 4889999998865 578999999999875
Q ss_pred cc
Q psy13357 97 KI 98 (833)
Q Consensus 97 h~ 98 (833)
..
T Consensus 407 ~~ 408 (459)
T COG4564 407 AL 408 (459)
T ss_pred hc
Confidence 44
No 102
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=86.12 E-value=1.3 Score=52.07 Aligned_cols=43 Identities=33% Similarity=0.424 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCeEEEEEec--CC--eEEEEECCCCcccc
Q psy13357 50 LHHLVFEILDNAIDESLAGYCTKINVTIYS--DN--SISISDNGRGIPID 95 (833)
Q Consensus 50 L~hlv~EIVdNsiDE~~aG~~~~I~V~I~~--Dg--sIsV~DnGrGIPv~ 95 (833)
+..++.+++.||+..+ .+..|.|.+.. ++ .++|.|||+|||.+
T Consensus 472 l~qv~~nll~NA~k~~---~~~~i~i~~~~~~~~~~~i~V~D~G~Gi~~~ 518 (565)
T PRK10935 472 LLQIIREATLNAIKHA---NASEIAVSCVTNPDGEHTVSIRDDGIGIGEL 518 (565)
T ss_pred HHHHHHHHHHHHHhcC---CCCeEEEEEEEcCCCEEEEEEEECCcCcCCC
Confidence 4567778888887754 34568888764 34 58999999999953
No 103
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=85.47 E-value=1.1 Score=51.64 Aligned_cols=79 Identities=25% Similarity=0.400 Sum_probs=56.2
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC----eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSDN----SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNK 124 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg----sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd 124 (833)
-+..++--++.||+|++.. +++-|+|+...+. .|.|.|||.|-|++..++ .| +.++++|-
T Consensus 564 ~ieQVlvNl~~NaldA~~h-~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dk------------Ll-~PFttsK~-- 627 (673)
T COG4192 564 SIEQVLVNLIVNALDASTH-FAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDK------------LL-TPFTTSKE-- 627 (673)
T ss_pred hHHHHHHHHHHHHHhhhcc-CCceEEEEeecCcccceEEEEecCCCCCchhHHHH------------hc-CCcccccc--
Confidence 3678888899999997642 3477888877643 799999999999887765 34 34444542
Q ss_pred CcceecCCcccccchhhhhcccceeE
Q psy13357 125 NSYKISGGLHGIGLSCVNGLSRFLQL 150 (833)
Q Consensus 125 ~~ykvSgGlhGvG~svvNAlS~~~~V 150 (833)
-| =|+|+|....+-+.+.-
T Consensus 628 ------vg-LGlGLSIsqSlmeqmqG 646 (673)
T COG4192 628 ------VG-LGLGLSISQSLMEQMQG 646 (673)
T ss_pred ------cc-cccchhHHHHHHHHhcC
Confidence 22 37899988877666543
No 104
>PF14501 HATPase_c_5: GHKL domain
Probab=84.99 E-value=6.3 Score=35.92 Aligned_cols=72 Identities=26% Similarity=0.312 Sum_probs=48.3
Q ss_pred chhHHHHHHHHHHHhhhcCCC-CCeEEEEEecC-C--eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGY-CTKINVTIYSD-N--SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNK 124 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~-~~~I~V~I~~D-g--sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd 124 (833)
-|..++--++|||++++..-. ...|.|.+... | .|+|.+.-.. +. . .+.
T Consensus 5 dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~~~~~~i~i~N~~~~---~~--~---------------~~~------- 57 (100)
T PF14501_consen 5 DLCRILGNLLDNAIEACKKYEDKRFISISIREENGFLVIIIENSCEK---EI--E---------------KLE------- 57 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCEEEEEEEECCCC---cc--c---------------ccc-------
Confidence 367888999999999987433 67788888863 4 5667775221 10 0 011
Q ss_pred CcceecCCcccccchhhhhcccce
Q psy13357 125 NSYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 125 ~~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
..+..++-||.|++.|..+-+..
T Consensus 58 -~~~~~~~~~G~GL~~v~~i~~~y 80 (100)
T PF14501_consen 58 -SSSSKKKGHGIGLKNVKKILEKY 80 (100)
T ss_pred -ccccCCCCCCcCHHHHHHHHHHC
Confidence 11345667999999998887665
No 105
>KOG0020|consensus
Probab=82.59 E-value=2.2 Score=49.46 Aligned_cols=163 Identities=20% Similarity=0.246 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhhhc-----C-------CCCCeEEEEEecC---CeEEEEECCCCcccccccCCCCCC-CCcceeeeeeec
Q psy13357 53 LVFEILDNAIDESL-----A-------GYCTKINVTIYSD---NSISISDNGRGIPIDIKIDDKHKP-KRSAAEIVMTEL 116 (833)
Q Consensus 53 lv~EIVdNsiDE~~-----a-------G~~~~I~V~I~~D---gsIsV~DnGrGIPv~~h~~~~~~~-~~~~~E~Vft~L 116 (833)
.++|+|.||-|+-- + |......|.|..| ....|.|.|-||.-+..-+. -|+ -+|.---.+.++
T Consensus 99 FLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~DtGiGMT~edLi~N-LGTIAkSGTs~Fl~Km 177 (785)
T KOG0020|consen 99 FLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDTGIGMTREDLIKN-LGTIAKSGTSEFLEKM 177 (785)
T ss_pred HHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEecccCCccHHHHHHh-hhhhhcccHHHHHHHh
Confidence 35799999988642 1 2233444554443 36899999999976543320 000 011111122222
Q ss_pred cccCCCCCCcceecCCcccccchhhhhcccceeEEEEeCC-eEEEEEEEcccccccccccccccccCCceEeccCCCCcc
Q psy13357 117 HAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNK-KIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGT 195 (833)
Q Consensus 117 hAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~G-k~y~q~f~~G~~~~~~~~~~~~~~~~~l~~~g~~~~~GT 195 (833)
...+.-.+ .-.--.|+.|||.-.+=.++.+..|+++.+. ..|..+-.-+. +.....+ -|.+-.+||
T Consensus 178 ~~~~~~~~-~~~dlIGQFGVGFYsAfLVAD~vvVtsKhNdD~QyiWESdan~----------FsvseDp--rg~tL~RGt 244 (785)
T KOG0020|consen 178 QDSGDSEG-LMNDLIGQFGVGFYSAFLVADRVVVTSKHNDDSQYIWESDANS----------FSVSEDP--RGNTLGRGT 244 (785)
T ss_pred hccccchh-hHHHHHHhcchhhhhhhhhcceEEEEeccCCccceeeeccCcc----------eeeecCC--CCCcccCcc
Confidence 22222111 1123458899999999999999999987644 34443322221 1111111 356678999
Q ss_pred EEEEEeCccccccccccHHHHHHHHHHhh-ccCCCcE
Q psy13357 196 KIHFWVDEKIFSNIEFHYEILKKRIRELS-FLNNGVC 231 (833)
Q Consensus 196 ~V~F~PD~~iF~~~~~~~~~l~~RlrelA-~LnpGl~ 231 (833)
.|+...--+- ..-+..++|...++..+ |+|--+.
T Consensus 245 ~ItL~LkeEA--~dyLE~dtlkeLvkkYSqFINFpI~ 279 (785)
T KOG0020|consen 245 EITLYLKEEA--GDYLEEDTLKELVKKYSQFINFPIS 279 (785)
T ss_pred EEEEEehhhh--hhhcchhHHHHHHHHHHHhcCCcee
Confidence 9998721110 11246778888888776 6664443
No 106
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=77.96 E-value=2.3 Score=49.61 Aligned_cols=47 Identities=28% Similarity=0.404 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHhhhcC--CCCCeEEEEEecC-C--eEEEEECCCCccccc
Q psy13357 50 LHHLVFEILDNAIDESLA--GYCTKINVTIYSD-N--SISISDNGRGIPIDI 96 (833)
Q Consensus 50 L~hlv~EIVdNsiDE~~a--G~~~~I~V~I~~D-g--sIsV~DnGrGIPv~~ 96 (833)
|--++-=+||||+-++.. -.+..|.|.+... + .++|.|||.||.-..
T Consensus 351 p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~ 402 (456)
T COG2972 351 PKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNGPGIDEEK 402 (456)
T ss_pred chHHHhHHHHHHHHHhcccCCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhH
Confidence 456677899999999873 3455788877654 4 588999999998543
No 107
>KOG0019|consensus
Probab=70.08 E-value=6.9 Score=46.75 Aligned_cols=155 Identities=19% Similarity=0.152 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhhhcC------------CCCCeEEEEEecC-CeEEEEECCCCcccccccCCCCCCCCcceeeeeeecccc
Q psy13357 53 LVFEILDNAIDESLA------------GYCTKINVTIYSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAG 119 (833)
Q Consensus 53 lv~EIVdNsiDE~~a------------G~~~~I~V~I~~D-gsIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAG 119 (833)
.++|+|-||-|+... +.--.|.++-+++ +.+++.|.|.||.-+..... .=|....|
T Consensus 61 FlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~nk~~~tlti~DtGIGMTk~dLvnn-----------LGTIAkSG 129 (656)
T KOG0019|consen 61 FLRELISNASDALEKLRYLELKGDEKALPELEIRIITNKDKRTITIQDTGIGMTKEDLVNN-----------LGTIAKSG 129 (656)
T ss_pred HHHhhhccccchHHHHHHHhhcCccccccceeEEeccCCCcceEEEEecCCCcCHHHHHhh-----------hhhhhhcc
Confidence 467999999887531 1122355555553 58999999999876654430 11233444
Q ss_pred CC-CCC-----CcceecCCcccccchhhhhcccceeEEEEeCC-eEEEEEEEcccccccccccccccccCCceEec-cCC
Q psy13357 120 GK-FNK-----NSYKISGGLHGIGLSCVNGLSRFLQLTINRNK-KIHYMEFRYGVLQNRIIKTINGISVSPIKIIG-DTN 191 (833)
Q Consensus 120 gK-Fdd-----~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~G-k~y~q~f~~G~~~~~~~~~~~~~~~~~l~~~g-~~~ 191 (833)
+| |-. ++-.---|+.|||.-.+...+.+..|+++.+. ..|..++..|. .- .+.. ..-
T Consensus 130 tK~Fmealkea~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~~~e~y~Wes~~~g-----------s~----~v~~~~~~ 194 (656)
T KOG0019|consen 130 SKAFLEALKEAEAESNLIGQFGVGFYSAFMVADRVVVTTRHPADEGLQWTSNGRG-----------SY----EIAEASGL 194 (656)
T ss_pred cHHHHHHHHhcccchhhhhhcccchhhhhhhhheeEEeeccCCCcceeeecCCCC-----------ce----EEeeccCc
Confidence 44 211 11223568999999999999999999887544 34555555541 11 1111 125
Q ss_pred CCccEEEEEe--CccccccccccHHHHHHHHHHhhccCCCcEEEEeecc
Q psy13357 192 KQGTKIHFWV--DEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDER 238 (833)
Q Consensus 192 ~~GT~V~F~P--D~~iF~~~~~~~~~l~~RlrelA~LnpGl~I~l~der 238 (833)
.+||+|...- |..- -.+.+.|.+-+..-+. +=|..|+|+.++
T Consensus 195 ~rGTki~l~lKe~~~e----y~ee~rikeiVKK~S~-Fv~yPI~l~~ek 238 (656)
T KOG0019|consen 195 RTGTKIVIHLKEGDCE----FLEEKRIKEVVKKYSN-FVSYPIYLNGER 238 (656)
T ss_pred cccceEEeeehhhhhh----hccHhHHHHHHhhccc-cccccchhhhhh
Confidence 7899988651 1111 1234445554444332 124446666555
No 108
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=69.40 E-value=7.8 Score=45.30 Aligned_cols=46 Identities=22% Similarity=0.419 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHhhhcCCC--CCeEEEEEec-CC--eEEEEECCCCcccc
Q psy13357 50 LHHLVFEILDNAIDESLAGY--CTKINVTIYS-DN--SISISDNGRGIPID 95 (833)
Q Consensus 50 L~hlv~EIVdNsiDE~~aG~--~~~I~V~I~~-Dg--sIsV~DnGrGIPv~ 95 (833)
++=++.=+|+|||-++...- ...|.|++.. |+ .|.|+|||+||+.+
T Consensus 457 P~filQPLVENAIKHG~~~~~~~g~V~I~V~~~d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 457 PSFILQPLVENAIKHGISQLKDTGRVTISVEKEDADLRIEVEDNGGLIQPD 507 (557)
T ss_pred chhhhhHHHHHHHHhcccchhcCCceEEEEEEeCCeEEEEEecCCCCcCCC
Confidence 45567889999999998431 2234444444 33 68899999999975
No 109
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=68.91 E-value=3.1 Score=49.93 Aligned_cols=84 Identities=24% Similarity=0.344 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCeEEEEEec--CC-eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCCc
Q psy13357 50 LHHLVFEILDNAIDESLAGYCTKINVTIYS--DN-SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNS 126 (833)
Q Consensus 50 L~hlv~EIVdNsiDE~~aG~~~~I~V~I~~--Dg-sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ 126 (833)
|..++.-++.|||--...+ ...|.|..+. |. +++|.|||-||....... .=.+|-.||+-..|.
T Consensus 637 l~qv~~NLi~Naik~~~~e-~~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~r---------iF~iFqRl~s~~~y~--- 703 (750)
T COG4251 637 LGQVFQNLIANAIKFGGPE-NPDIEISAERQEDEWTFSVRDNGIGIDPAYFER---------IFVIFQRLHSRDEYL--- 703 (750)
T ss_pred HHHHHHHHHhhheecCCCC-CCceEEeeeccCCceEEEecCCCCCcCHHHHHH---------HHHHHHhcCchhhhc---
Confidence 5566777777777655444 5789999775 44 799999999998765432 123688888877663
Q ss_pred ceecCCcccccchhhhhcccceeEEE
Q psy13357 127 YKISGGLHGIGLSCVNGLSRFLQLTI 152 (833)
Q Consensus 127 ykvSgGlhGvG~svvNAlS~~~~Vev 152 (833)
| +|.|+.++-.+.+.-...+
T Consensus 704 -----g-tG~GL~I~kkI~e~H~G~i 723 (750)
T COG4251 704 -----G-TGLGLAICKKIAERHQGRI 723 (750)
T ss_pred -----C-CCccHHHHHHHHHHhCceE
Confidence 3 8999999888877654443
No 110
>cd00823 TopoIIB_Trans TopoIIB_Trans: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIB family of DNA topoisomerases similar to Sulfolobus shibatae topoisomerase VI (topoVI). The sole representative of the Type IIB family is topo VI. Topo VI enzymes are heterotetramers found in archaea and plants. S. shibatae topoVI relaxes both positive and negative supercoils, and in addition has a strong decatenase activity. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes.
Probab=63.34 E-value=53 Score=32.99 Aligned_cols=79 Identities=20% Similarity=0.390 Sum_probs=51.5
Q ss_pred eEEEEeeeecCCC----cceeEEeeccee-ccCCcchHHHHHHHHHHHHHHHHHHcccccccCCCCCHHHHhhcceeEEE
Q psy13357 284 INIDVSMQWNNSY----NENILCFTNNIL-QVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLS 358 (833)
Q Consensus 284 i~veval~~~d~~----~e~i~SFVN~I~-T~~GGTHv~gf~~altr~in~y~~~~~l~Kk~k~~l~~~DIregL~avIs 358 (833)
..||+++.|...- .-+++=|+|-|| ..+.|. .++|+++... +. +..+.+..+ ..-+.++|+
T Consensus 33 FiVEagiayGG~~~~~~~~~i~RfANRVPLlf~~g~------cvit~av~~i----~W-~~Ygi~~~~---~~p~~v~Vh 98 (151)
T cd00823 33 FIVEVGIAYGGDIPADEKVELLRFANRVPLLYDAGA------CVITKAVESI----NW-KRYGLEQPG---QGPLVVLVH 98 (151)
T ss_pred eEEEEeeeecCccCCCCCceEEEEcccCceeecccc------hHHHHHHHhC----Ch-hhcCcCCCC---CCCEEEEEE
Confidence 6689999886332 246899999998 345554 3456555421 11 111111111 235788999
Q ss_pred EeecCCCCCccccccccc
Q psy13357 359 IKIPDPKFNSQTKNKLVS 376 (833)
Q Consensus 359 vki~nP~FegQTK~kL~n 376 (833)
+--.+-.|.|-.|+...+
T Consensus 99 i~St~VPfts~~KeaIad 116 (151)
T cd00823 99 VASTKVPFTSEGKEAIAD 116 (151)
T ss_pred EeecCCCcCCcchhhhcC
Confidence 999999999999999987
No 111
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=63.05 E-value=7.4 Score=48.14 Aligned_cols=85 Identities=24% Similarity=0.407 Sum_probs=47.7
Q ss_pred HHHHHHhhhcC--------C--CCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeee--------eee
Q psy13357 57 ILDNAIDESLA--------G--YCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIV--------MTE 115 (833)
Q Consensus 57 IVdNsiDE~~a--------G--~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~V--------ft~ 115 (833)
+|-||+|+.+. | -..+|.+.-...| .|+|.|||+||..+....+--+.|.-..+.+ +--
T Consensus 440 LvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~Ei~~L 519 (716)
T COG0643 440 LVRNAVDHGIETPEERRAAGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDEEILNL 519 (716)
T ss_pred HHhcchhccCCCHHHHHHcCCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCHHHHHHH
Confidence 45589988862 4 2446777765544 5899999999998765421011243333221 111
Q ss_pred ccccCCCCCCc--ceecCCcccccchhhhhc
Q psy13357 116 LHAGGKFNKNS--YKISGGLHGIGLSCVNGL 144 (833)
Q Consensus 116 LhAGgKFdd~~--ykvSgGlhGvG~svvNAl 144 (833)
+++ .-|.... --+|| +|||+=||.--
T Consensus 520 IF~-PGFSTa~~VtdvSG--RGVGMDVVk~~ 547 (716)
T COG0643 520 IFA-PGFSTAEQVTDVSG--RGVGMDVVKTN 547 (716)
T ss_pred Hhc-CCCCcchhhhcccC--CccCHHHHHHH
Confidence 222 2243321 24566 79999988543
No 112
>PF09239 Topo-VIb_trans: Topoisomerase VI B subunit, transducer; InterPro: IPR015320 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. This entry represents subunit B of topoisomerase VI, an ATP-dependent type IIB enzyme. Members of this family adopt a structure consisting of a four-stranded beta-sheet backed by three alpha-helices, the last of which is over 50 amino acids long and extends from the body of the protein by several turns. This domain has been proposed to mediate intersubunit communication by structurally transducing signals from the ATP binding and hydrolysis domains to the DNA binding and cleavage domains of the gyrase holoenzyme []. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0006265 DNA topological change, 0005694 chromosome; PDB: 2ZBK_F 2HKJ_A 1Z5B_A 1Z5C_B 1MX0_F 1Z5A_A 1MU5_A 1Z59_A 2Q2E_B.
Probab=57.18 E-value=61 Score=32.85 Aligned_cols=79 Identities=19% Similarity=0.305 Sum_probs=47.7
Q ss_pred eEEEEeeeecC----CCcceeEEeecceec-cCCcchHHHHHHHHHHHHHHHHHHcccccccCCCCCHHHHhhcceeEEE
Q psy13357 284 INIDVSMQWNN----SYNENILCFTNNILQ-VDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLS 358 (833)
Q Consensus 284 i~veval~~~d----~~~e~i~SFVN~I~T-~~GGTHv~gf~~altr~in~y~~~~~l~Kk~k~~l~~~DIregL~avIs 358 (833)
..||+++.|.. .-.-.++=|+|-||- .+.|. .++|+++.+. +. +..+ ++..+ ..-+.++|+
T Consensus 42 FiVEagiayGG~~~~~~~~~ilRfANRVPLly~~g~------cvit~av~~i----~W-~~Y~--l~~~~-~~p~~v~Vh 107 (160)
T PF09239_consen 42 FIVEAGIAYGGEIPPEGKIEILRFANRVPLLYDQGS------CVITKAVKSI----NW-KRYG--LDQPG-NGPLVVFVH 107 (160)
T ss_dssp EEEEEEEEESTTS-SCSS-EEEEEETTEEE-STGCC------SHHHHHHHHS-----G-CCCT----SSS--CSEEEEEE
T ss_pred EEEEEehhhccCCCCCCCceEEEEccCCceeecCCc------hHHHHHHHhC----Cc-hhcC--cCCCC-CCCEEEEEE
Confidence 56899999862 123468999999983 45554 2456666532 11 1122 22222 345788999
Q ss_pred EeecCCCCCccccccccc
Q psy13357 359 IKIPDPKFNSQTKNKLVS 376 (833)
Q Consensus 359 vki~nP~FegQTK~kL~n 376 (833)
+--.+-.|.|-.|+...+
T Consensus 108 i~ST~VPfts~~KeaIa~ 125 (160)
T PF09239_consen 108 IASTKVPFTSEGKEAIAD 125 (160)
T ss_dssp EEESS--BSSTTSSSB--
T ss_pred EeecccCccccchhhhcC
Confidence 999999999999999983
No 113
>PRK04017 hypothetical protein; Provisional
Probab=55.19 E-value=2.3 Score=41.61 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=25.3
Q ss_pred CCCceeeccCCCCCchhHHHHHHHHHHHh
Q psy13357 523 RYHRIIIMTDADIDGAHIRALLLTFFYRK 551 (833)
Q Consensus 523 RY~kIiImTDADvDGsHI~~Llltff~r~ 551 (833)
.+..|||+||.|-=|..||..|...|..+
T Consensus 64 ~~r~VIILTD~D~~GekIr~~l~~~l~~~ 92 (132)
T PRK04017 64 RGKEVIILTDFDRKGEELAKKLSEYLQGY 92 (132)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhC
Confidence 46789999999999999999998887653
No 114
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=45.69 E-value=17 Score=35.48 Aligned_cols=25 Identities=40% Similarity=0.639 Sum_probs=21.7
Q ss_pred CCCCceeeccCCCCCchhHHHHHHH
Q psy13357 522 LRYHRIIIMTDADIDGAHIRALLLT 546 (833)
Q Consensus 522 LRY~kIiImTDADvDGsHI~~Lllt 546 (833)
++|..|||+||.|.=|.-||--|.-
T Consensus 53 ~~~k~VIILTD~D~~Ge~Irk~l~~ 77 (127)
T COG1658 53 QKYKGVIILTDPDRKGERIRKKLKE 77 (127)
T ss_pred hccCCEEEEeCCCcchHHHHHHHHH
Confidence 5788899999999999999987543
No 115
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=44.87 E-value=5.2 Score=35.16 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=14.8
Q ss_pred CCceeeccCCCCCchhHHH
Q psy13357 524 YHRIIIMTDADIDGAHIRA 542 (833)
Q Consensus 524 Y~kIiImTDADvDGsHI~~ 542 (833)
+.+|||++|.|..|--...
T Consensus 46 ~~~Vii~~D~D~~G~~~a~ 64 (81)
T PF13662_consen 46 VKEVIIAFDNDKAGEKAAQ 64 (81)
T ss_dssp -SEEEEEEESSHHHHHHHH
T ss_pred CceEEEEeCcCHHHHHHHH
Confidence 5899999999999964443
No 116
>PRK04031 DNA primase; Provisional
Probab=41.49 E-value=31 Score=39.85 Aligned_cols=121 Identities=25% Similarity=0.324 Sum_probs=65.2
Q ss_pred HHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHhHHhhhcccccccccccccccccCCCCCCceEEEEeecCC-Ccccc
Q psy13357 388 IKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDS-AGGSV 466 (833)
Q Consensus 388 ~~~l~~~l~~np~~ak~Ii~ki~~~a~ar~aa~kar~~~r~k~~~~~~~lpgKL~dc~~kd~~~~eLflvEGDS-AgGsa 466 (833)
++.|..||++.--..+.|++.+-++.+ . .+.+- .. |-|| +|...=...-++++|||=. .-...
T Consensus 122 keil~~~~~e~~~~s~ei~~ev~e~vr------~-~ei~e----yg----~ekL-~Agp~i~k~~~iIVVEG~~DVi~L~ 185 (408)
T PRK04031 122 KEILKKWFDEKVPDSKEIIEEVREAVR------V-EEITE----YG----PEKL-PAGPNVDDSDAIIVVEGRADVLNLL 185 (408)
T ss_pred HHHHHHHhhccCccHHHHHHHHHHHhh------h-cccee----ec----cccc-ccCcccccCCeEEEEeCHHHHHHHH
Confidence 566888998875567777776644322 1 12221 11 2233 3544334556899999943 12222
Q ss_pred ccccCCcceeecccCcccccccccchhHhhccHhHHHHHHHhCCCCCCCCCCcCCCCCCceeeccCCCCCchhHHHHHHH
Q psy13357 467 KQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLT 546 (833)
Q Consensus 467 k~gRdr~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li~alG~g~~~~~~~~~~LRY~kIiImTDADvDGsHI~~Lllt 546 (833)
+.| +.|.+..+|+.+.. + =.+-++-.+||+++|-|.-|--|+--|+.
T Consensus 186 ~aG-------------------------------i~nvVAt~GT~l~~-~-i~~l~k~~~Vil~~DgD~aGe~I~k~l~~ 232 (408)
T PRK04031 186 RYG-------------------------------IKNAIAVEGTNVPE-T-IIELSKKKTVTAFLDGDRGGELILKELLQ 232 (408)
T ss_pred hcc-------------------------------cceEEEeCCcccHH-H-HHHHhcCCCEEEEECCCHHHHHHHHHHHh
Confidence 222 22333334443321 0 01112356899999999999877554433
Q ss_pred HHHHhcHhhhhcCcEEEEcCc
Q psy13357 547 FFYRKMPKLIEYGYIYIAQPP 567 (833)
Q Consensus 547 ff~r~~p~Li~~G~vyia~pP 567 (833)
. .-+.|++.-|
T Consensus 233 v----------~~~d~VaraP 243 (408)
T PRK04031 233 V----------ADIDYVARAP 243 (408)
T ss_pred h----------cceeEEecCC
Confidence 1 2267888888
No 117
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=39.04 E-value=3.3 Score=37.01 Aligned_cols=27 Identities=37% Similarity=0.630 Sum_probs=24.0
Q ss_pred CCceeeccCCCCCchhHHHHHHHHHHH
Q psy13357 524 YHRIIIMTDADIDGAHIRALLLTFFYR 550 (833)
Q Consensus 524 Y~kIiImTDADvDGsHI~~Llltff~r 550 (833)
+.+|||+||.|-=|..|+.-+...+-.
T Consensus 45 ~~~VIiltD~D~aG~~i~~~~~~~l~~ 71 (81)
T cd01027 45 YRGVIILTDPDRKGEKIRKKLSEYLSG 71 (81)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHhcc
Confidence 789999999999999999988877743
No 118
>cd01028 TOPRIM_TopoIA TOPRIM_TopoIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IA family of DNA topoisomerases (TopoIA). This subgroup contains proteins similar to the Type I DNA topoisomerases: E. coli topisomerases I and III, eukaryotic topoisomerase III and, ATP-dependent reverse gyrase found in archaea and thermophilic bacteria. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA. These enzymes cleave one strand of the DNA duplex, covalently link to the 5' phosphoryl end of the DNA break and allow the other strand of the duplex to pass through the gap. Reverse gyrase is also able to insert positive supercoils in the presence of ATP and negative supercoils in the presence of AMPPNP. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general b
Probab=38.35 E-value=26 Score=34.32 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.6
Q ss_pred CCceeeccCCCCCchhHHHHHHHHHH
Q psy13357 524 YHRIIIMTDADIDGAHIRALLLTFFY 549 (833)
Q Consensus 524 Y~kIiImTDADvDGsHI~~Llltff~ 549 (833)
...|||+||+|--|-+|--.++.++-
T Consensus 91 ~d~iiiAtD~DrEGE~I~~~i~~~~~ 116 (142)
T cd01028 91 ADEIVLATDPDREGELIAWEILEVLK 116 (142)
T ss_pred CCEEEEcCCCCcchHHHHHHHHHHhC
Confidence 46899999999999999988877663
No 119
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=37.07 E-value=2.4e+02 Score=33.66 Aligned_cols=86 Identities=17% Similarity=0.383 Sum_probs=53.8
Q ss_pred eEEEEeeeecCCC----cceeEEeecceec-cCCcchHHHHHHHHHHHHHHHHHHcccccccCCCCCHHHHhh-cceeEE
Q psy13357 284 INIDVSMQWNNSY----NENILCFTNNILQ-VDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIRE-GLTCVL 357 (833)
Q Consensus 284 i~veval~~~d~~----~e~i~SFVN~I~T-~~GGTHv~gf~~altr~in~y~~~~~l~Kk~k~~l~~~DIre-gL~avI 357 (833)
..||+++.|...- .-.++=|+|-||- .+.|. .++|+++... +. +.. .+. +.-. =+.++|
T Consensus 348 fiVE~~iayGg~~~~~~~~~i~RfaNrvPLl~~~g~------~~~t~~v~~i----~w-~~Y--~~~--~~~~~p~~v~v 412 (488)
T TIGR01052 348 FIVEVGIAYGGNIGRRSEPEILRYANKVPLLYDAGS------CVLTKAVKSI----NW-KRY--GIR--DFPSAPLVVLV 412 (488)
T ss_pred eEEEEeeecCCcCCCCCceeEEEecccCceeecccc------cHHHHHHHhC----Ch-hhc--CCC--CCCCCCEEEEE
Confidence 5689999996321 2458999999984 44554 3556666421 11 111 121 1222 378899
Q ss_pred EEeecCCCCCccccccccc-cccchhhH
Q psy13357 358 SIKIPDPKFNSQTKNKLVS-SEVRKPVE 384 (833)
Q Consensus 358 svki~nP~FegQTK~kL~n-~ev~~~v~ 384 (833)
++--.+-.|.|--|+.+.+ ||+..-++
T Consensus 413 hi~St~vPf~s~~Ke~ia~~~ei~~ei~ 440 (488)
T TIGR01052 413 NLASTNVPYTSTGKQSVADIPEIYNEIR 440 (488)
T ss_pred EEeecCCCCCCcchhhhcCCHHHHHHHH
Confidence 9999999999999999964 44444333
No 120
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=33.41 E-value=3e+02 Score=33.33 Aligned_cols=98 Identities=16% Similarity=0.308 Sum_probs=59.7
Q ss_pred eEEEEeeeecCCC----cceeEEeeccee-ccCCcchHHHHHHHHHHHHHHHH-HHcccccccCCCCCHHHHhhcceeEE
Q psy13357 284 INIDVSMQWNNSY----NENILCFTNNIL-QVDGGTHLTGLRSGITRAINKYI-EENEFLKKSKIEIIGEDIREGLTCVL 357 (833)
Q Consensus 284 i~veval~~~d~~----~e~i~SFVN~I~-T~~GGTHv~gf~~altr~in~y~-~~~~l~Kk~k~~l~~~DIregL~avI 357 (833)
..||+++.|...- .-.++=|+|-|| ..+.|. .++|+++...= +..++.. . =..-+.++|
T Consensus 353 fiVE~~iayGg~~~~~~~~~i~RfANrvPLl~~~g~------~~~t~~v~~i~w~~Y~~~~------~---~~~p~~v~v 417 (535)
T PRK04184 353 FIVEVGIAYGGEIPPDDKPELLRFANRVPLLYDEGS------CVITKAVESIDWKRYGIEQ------P---PQAPLVVLV 417 (535)
T ss_pred eEEEEEeeecCCCCCCCCceEEEEccCCceeecCCc------cHHHHHHHhCChhhcCcCC------C---CCCCEEEEE
Confidence 6689999996322 236899999998 445554 34566554210 1112211 1 012368888
Q ss_pred EEeecCCCCCccccccccc-cccchhhHHHHH---HHHHHHHH
Q psy13357 358 SIKIPDPKFNSQTKNKLVS-SEVRKPVEEIII---KTLFDFLQ 396 (833)
Q Consensus 358 svki~nP~FegQTK~kL~n-~ev~~~v~~~v~---~~l~~~l~ 396 (833)
+|--.+-.|.|--|+...+ ||+..-++..+. ..|..|+.
T Consensus 418 hi~St~vP~~s~~Ke~ia~~~ei~~ei~~al~~~~r~L~~~l~ 460 (535)
T PRK04184 418 HVASTKVPYTSEGKEAIADVPEIEKEIRLALQEVARKLKKYLS 460 (535)
T ss_pred EEeecCCCCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999986 454444443332 34555554
No 121
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=32.16 E-value=74 Score=28.19 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=23.1
Q ss_pred cchhhHHHHHHHHHHHHHhCchhhHHHHHHHHHH
Q psy13357 379 VRKPVEEIIIKTLFDFLQENPGESKLICEKIIEA 412 (833)
Q Consensus 379 v~~~v~~~v~~~l~~~l~~np~~ak~Ii~ki~~~ 412 (833)
+...|.+.+...|.+||.+| .-.+|++++..
T Consensus 35 lE~lvremLRPmLkeWLD~n---LP~lVErlVr~ 65 (73)
T PF10691_consen 35 LEDLVREMLRPMLKEWLDEN---LPGLVERLVRE 65 (73)
T ss_pred HHHHHHHHHHHHHHHHHHhc---cHHHHHHHHHH
Confidence 55678899999999999999 22455655553
No 122
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=30.01 E-value=3.4e+02 Score=33.70 Aligned_cols=98 Identities=13% Similarity=0.352 Sum_probs=60.5
Q ss_pred eEEEEeeeecCC--------CcceeEEeecceec-cCCcchHHHHHHHHHHHHHHHHHHcccccccCCCCCHHHHhh-cc
Q psy13357 284 INIDVSMQWNNS--------YNENILCFTNNILQ-VDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIRE-GL 353 (833)
Q Consensus 284 i~veval~~~d~--------~~e~i~SFVN~I~T-~~GGTHv~gf~~altr~in~y~~~~~l~Kk~k~~l~~~DIre-gL 353 (833)
..||+++.|... ..-.++=|+|-||- .+.|. .++|++++.. +. +..+ +.. .-. =+
T Consensus 498 FiVE~giayGG~~~~~~~~~~~~~i~RfANrvPLly~~g~------c~~t~~v~~i----~W-~~Y~--l~~--~~~~p~ 562 (659)
T PRK14867 498 FAVEVGLAYGGNAGRQGDEGRKMEIMRFSNHVPLLFDTSG------CGLTNAVKSV----NW-RRYG--LRS--DEDAPI 562 (659)
T ss_pred EEEEEeeecCCcCCCCCccCCcceEEEeeccCceeecCcc------cHHHHHHHhC----Ch-hhcC--cCC--CCCCCE
Confidence 458999998632 12368999999984 34444 3456666431 11 1111 111 112 27
Q ss_pred eeEEEEeecCCCCCcccccccc-----ccccchhhHHHHH---HHHHHHHH
Q psy13357 354 TCVLSIKIPDPKFNSQTKNKLV-----SSEVRKPVEEIII---KTLFDFLQ 396 (833)
Q Consensus 354 ~avIsvki~nP~FegQTK~kL~-----n~ev~~~v~~~v~---~~l~~~l~ 396 (833)
+++|+|--.+-.|.|--|+.+. +||+..-++.++. ..|..|+.
T Consensus 563 ~v~vhv~St~vPfts~~Keaia~~~~~~~eI~~Ei~lAl~~~~r~L~~~l~ 613 (659)
T PRK14867 563 TVFVNLISTHIPYTSAGKQAIACSEEENEEIFNEIRQALMICARELEKYIS 613 (659)
T ss_pred EEEEEEeecCCCCCCccHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999998 6666555554443 23555554
No 123
>cd03363 TOPRIM_TopoIA_TopoI TOPRIM_TopoIA_TopoI: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to Escherichia coli DNA topoisomerase I. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving one strand of the DNA duplex, covalently linking to the 5' phosphoryl end of the DNA break and, allowing the other strand of the duplex to pass through the gap. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general base in strand joining and, as a general acid in strand cleavage. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=26.28 E-value=48 Score=31.85 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.1
Q ss_pred CceeeccCCCCCchhHHHHHHHHH
Q psy13357 525 HRIIIMTDADIDGAHIRALLLTFF 548 (833)
Q Consensus 525 ~kIiImTDADvDGsHI~~Llltff 548 (833)
.-|||.||+|..|.+|.-.++..+
T Consensus 74 ~eiiiAtD~drEGe~i~~~i~~~~ 97 (123)
T cd03363 74 DEIYLATDPDREGEAIAWHLAEVL 97 (123)
T ss_pred CEEEEcCCCCcchHHHHHHHHHHc
Confidence 369999999999999987666554
No 124
>PF14484 FISNA: Fish-specific NACHT associated domain
Probab=25.21 E-value=41 Score=29.67 Aligned_cols=15 Identities=47% Similarity=0.558 Sum_probs=12.6
Q ss_pred CceEEEEeecCCCcc
Q psy13357 450 ELCELYIVEGDSAGG 464 (833)
Q Consensus 450 ~~~eLflvEGDSAgG 464 (833)
--++||||||+|.+-
T Consensus 29 iYTeLyIteg~~~~v 43 (73)
T PF14484_consen 29 IYTELYITEGGSGEV 43 (73)
T ss_pred hceeeeEeccCCCcc
Confidence 358999999999864
No 125
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains.; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....
Probab=23.57 E-value=1.4e+02 Score=28.35 Aligned_cols=59 Identities=20% Similarity=0.205 Sum_probs=38.6
Q ss_pred eeeecCCCcCch--------hHHHHHHHHHHHhh---------hcCCCCCeEEEEEecCCeEEEEECCCCcccccccC
Q psy13357 39 MYIGDTSDGTGL--------HHLVFEILDNAIDE---------SLAGYCTKINVTIYSDNSISISDNGRGIPIDIKID 99 (833)
Q Consensus 39 MYIGst~~~~GL--------~hlv~EIVdNsiDE---------~~aG~~~~I~V~I~~DgsIsV~DnGrGIPv~~h~~ 99 (833)
-|+|++.. +.. .+++.+.+.....+ ........+.+.|..+ .|.|.|.-.+-.+..||-
T Consensus 4 kYLGs~~V-~~~~~~~~~~g~~~v~~ai~~~~~~~~~~~~~~~~~~~~~~~V~l~vs~~-gI~v~~~~t~~~l~~~~i 79 (140)
T PF00640_consen 4 KYLGSVEV-SSSRRGDKSRGSDVVREAIQRLKAEKIAKSKKSKSNKKKPQKVTLNVSSD-GIKVIDPDTGEVLMSHPI 79 (140)
T ss_dssp EEEEEEEE-SSSSSTCHHHHHHHHHHHHHHHHHHCCCSHHHHHTTTSTSEEEEEEEETT-EEEEEETTTTCEEEEEEG
T ss_pred EEEEEEEE-CCccCCCcchhHHHHHHHHHHHHhhhhhhhhccccccccCeEEEEEEcCC-eEEEecCccccccccCCc
Confidence 59999865 333 34566666666555 1234567788888766 588999777777766663
No 126
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=22.44 E-value=1.3e+02 Score=35.62 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHhhhcCCC-CCeEEEEEecCCeEEEEECCCCcccccccC
Q psy13357 50 LHHLVFEILDNAIDESLAGY-CTKINVTIYSDNSISISDNGRGIPIDIKID 99 (833)
Q Consensus 50 L~hlv~EIVdNsiDE~~aG~-~~~I~V~I~~DgsIsV~DnGrGIPv~~h~~ 99 (833)
+...+.|+|.|||=+----. ...|.|.+..| .|.|++.| |.|.++-+.
T Consensus 271 P~~alREai~NAv~HRDYs~~~~~v~I~iydD-RieI~NPG-gl~~gi~~~ 319 (467)
T COG2865 271 PLEALREAIINAVIHRDYSIRGRNVHIEIYDD-RIEITNPG-GLPPGITPE 319 (467)
T ss_pred CHHHHHHHHHHHHHhhccccCCCceEEEEECC-eEEEECCC-CCCCCCChh
Confidence 45689999999986543222 23788888854 79999988 677666553
No 127
>cd03362 TOPRIM_TopoIA_TopoIII TOPRIM_TopoIA_TopoIII: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to topoisomerase III. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving one strand of the DNA duplex, covalently linking to the 5' phosphoryl end of the DNA break and, allowing the other strand of the duplex to pass through the gap. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general base in strand joining and, as a general acid in strand cleavage. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=20.27 E-value=89 Score=30.91 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=21.9
Q ss_pred CCceeeccCCCCCchhHHHHHHHHHH
Q psy13357 524 YHRIIIMTDADIDGAHIRALLLTFFY 549 (833)
Q Consensus 524 Y~kIiImTDADvDGsHI~~Llltff~ 549 (833)
...||++||+|--|.+|--.++..+-
T Consensus 99 ad~ii~atD~DrEGE~I~~~i~~~~~ 124 (151)
T cd03362 99 ADEIVIATDADREGELIGREILEYAK 124 (151)
T ss_pred CCeEEEccCCCccccHHHHHHHHHhC
Confidence 36799999999999999887776653
Done!