Query psy13357
Match_columns 833
No_of_seqs 280 out of 1761
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 17:24:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13357.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13357hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gfh_A DNA topoisomerase 2; to 100.0 3E-168 1E-172 1545.1 29.8 538 16-591 4-589 (1177)
2 3nuh_B DNA gyrase subunit B; t 100.0 6E-127 2E-131 1041.3 32.8 409 421-833 3-420 (420)
3 3lnu_A Topoisomerase IV subuni 100.0 6E-114 2E-118 961.3 33.5 384 17-429 22-408 (408)
4 1ei1_A DNA gyrase B, GYRB; ATP 100.0 2E-109 7E-114 925.8 37.1 388 17-425 2-390 (391)
5 1s16_A Topoisomerase IV subuni 100.0 2E-105 6E-110 894.6 37.8 382 17-424 3-387 (390)
6 1kij_A DNA gyrase subunit B; t 100.0 3E-99 1E-103 845.1 32.9 387 18-426 2-390 (390)
7 3k9f_C DNA topoisomerase 4 sub 100.0 3E-100 9E-105 789.4 18.4 242 425-833 21-266 (268)
8 1pvg_A DNA topoisomerase II; G 100.0 5E-100 2E-104 854.5 20.7 365 17-421 10-417 (418)
9 1zxm_A TOPO IIA ATPase, DNA to 100.0 2.2E-96 7E-101 821.6 21.1 361 21-416 3-394 (400)
10 3m4i_A DNA gyrase subunit B; G 100.0 3.8E-95 1.3E-99 744.0 14.9 231 443-833 11-242 (242)
11 3cwv_A DNA gyrase, B subunit, 100.0 3.1E-90 1.1E-94 766.1 27.5 343 27-414 9-363 (369)
12 2xkj_E Topoisomerase IV; type 100.0 1.4E-88 4.6E-93 795.4 17.3 258 406-833 1-259 (767)
13 3l4j_A DNA topoisomerase 2; to 100.0 9.4E-76 3.2E-80 680.1 14.9 225 434-826 3-239 (757)
14 3qx3_A DNA topoisomerase 2-bet 100.0 7.2E-76 2.5E-80 681.6 10.4 223 434-826 33-268 (803)
15 2xcs_B DNA gyrase subunit B, D 100.0 8.3E-75 2.8E-79 672.0 12.3 201 433-833 2-202 (692)
16 4duh_A DNA gyrase subunit B; s 100.0 5.6E-69 1.9E-73 556.9 16.3 217 17-249 3-220 (220)
17 4emv_A DNA topoisomerase IV, B 100.0 1.4E-67 4.9E-72 547.8 14.9 216 17-249 9-226 (226)
18 3ttz_A DNA gyrase subunit B; p 100.0 7E-58 2.4E-62 467.2 13.0 193 19-251 2-198 (198)
19 3fv5_A DNA topoisomerase 4 sub 100.0 2.4E-56 8.2E-61 457.2 17.1 199 29-247 1-201 (201)
20 2q2e_B Type 2 DNA topoisomeras 100.0 2.3E-41 7.9E-46 395.4 3.5 302 23-396 12-334 (621)
21 2zbk_B Type 2 DNA topoisomeras 99.9 8.4E-28 2.9E-32 277.5 5.0 288 22-367 5-312 (530)
22 3na3_A DNA mismatch repair pro 99.9 1.9E-24 6.4E-29 237.5 22.0 287 21-373 6-314 (348)
23 1b63_A MUTL; DNA mismatch repa 99.9 4.5E-24 1.5E-28 234.1 20.4 283 23-374 4-312 (333)
24 3h4l_A DNA mismatch repair pro 99.9 1.8E-23 6.2E-28 231.5 22.3 289 22-373 4-337 (367)
25 1h7s_A PMS1 protein homolog 2; 99.9 2E-21 6.7E-26 215.5 20.6 289 22-373 13-342 (365)
26 1mu5_A Type II DNA topoisomera 99.8 3.2E-19 1.1E-23 203.8 5.9 286 22-365 6-311 (471)
27 3t0h_A Heat shock protein HSP 98.9 3.3E-09 1.1E-13 110.3 10.2 160 49-238 32-216 (228)
28 2ior_A Chaperone protein HTPG; 98.9 3.9E-09 1.3E-13 110.3 9.0 144 50-224 48-221 (235)
29 3o0i_A HSP90AA1 protein; HSP90 98.8 9E-09 3.1E-13 108.5 9.9 160 49-238 60-244 (256)
30 2wer_A ATP-dependent molecular 98.8 1.6E-08 5.6E-13 104.4 11.2 164 49-238 26-211 (220)
31 1y4s_A Chaperone protein HTPG; 98.8 6.6E-08 2.3E-12 112.3 16.2 154 49-232 27-210 (559)
32 1yc1_A HSP 86, heat shock prot 98.7 2.7E-08 9.1E-13 105.7 8.7 161 49-238 68-252 (264)
33 2ioq_A Chaperone protein HTPG; 98.7 8.7E-08 3E-12 112.6 13.6 154 49-232 27-210 (624)
34 2gqp_A Endoplasmin; GRP94, HSP 98.7 4.9E-08 1.7E-12 102.0 10.2 163 49-238 32-221 (236)
35 3nmq_A Heat shock protein HSP 98.5 2.3E-07 7.8E-12 96.9 10.4 172 49-250 39-235 (239)
36 1qy5_A Endoplasmin; GRP94, NEC 98.4 2.8E-07 9.4E-12 98.1 7.1 163 49-238 28-217 (269)
37 3peh_A Endoplasmin homolog; st 98.4 2.3E-06 7.8E-11 91.2 13.3 163 49-238 46-232 (281)
38 2cg9_A ATP-dependent molecular 98.3 3.6E-06 1.2E-10 99.5 13.8 156 50-234 27-207 (677)
39 2o1u_A Endoplasmin; GRP94, HSP 98.2 3.8E-06 1.3E-10 99.2 12.2 157 49-236 45-232 (666)
40 3ied_A Heat shock protein; HSP 97.9 2.5E-05 8.6E-10 82.0 9.4 127 72-224 120-260 (272)
41 1th8_A Anti-sigma F factor; SP 97.8 3.1E-05 1.1E-09 73.1 7.5 83 49-153 39-125 (145)
42 1id0_A PHOQ histidine kinase; 97.6 0.00024 8.3E-09 66.7 9.5 77 48-148 43-122 (152)
43 3jz3_A Sensor protein QSEC; he 97.5 8.9E-05 3E-09 73.8 6.6 78 49-148 117-194 (222)
44 3a0y_A Sensor protein; ATP-LID 97.5 0.0002 6.9E-09 67.0 8.4 75 48-146 46-123 (152)
45 1bxd_A ENVZ(290-450), protein 97.5 0.0002 6.8E-09 68.3 8.1 79 48-148 46-127 (161)
46 3sl2_A Sensor histidine kinase 97.5 0.00024 8.1E-09 69.0 8.1 85 48-148 42-129 (177)
47 1ysr_A Sensor-type histidine k 97.4 0.0002 6.7E-09 67.5 6.9 79 48-148 45-126 (150)
48 1r62_A Nitrogen regulation pro 97.3 0.00024 8.3E-09 66.9 5.6 78 48-148 47-137 (160)
49 2e0a_A Pyruvate dehydrogenase 97.3 0.00023 7.8E-09 79.0 6.1 89 49-149 230-328 (394)
50 3zxo_A Redox sensor histidine 97.2 0.00045 1.5E-08 63.2 6.8 60 49-148 43-104 (129)
51 1gkz_A [3-methyl-2-oxobutanoat 97.2 0.00021 7.1E-09 79.0 5.4 90 48-149 237-351 (388)
52 4ew8_A Sensor protein DIVL; si 97.2 0.0007 2.4E-08 69.6 8.4 76 49-148 155-233 (268)
53 2c2a_A Sensor histidine kinase 97.2 0.00058 2E-08 70.2 7.6 85 48-148 137-225 (258)
54 3ehg_A Sensor kinase (YOCF pro 97.1 0.00077 2.6E-08 62.2 7.0 44 49-95 40-86 (128)
55 2q8g_A [pyruvate dehydrogenase 97.1 0.00028 9.6E-09 78.6 4.2 89 49-149 243-341 (407)
56 1y8o_A [pyruvate dehydrogenase 97.0 0.00021 7.3E-09 80.0 2.8 89 49-149 253-352 (419)
57 2btz_A Pyruvate dehydrogenase 97.0 0.00027 9.3E-09 78.3 3.3 89 49-149 231-328 (394)
58 3a0r_A Sensor protein; four he 97.0 0.00075 2.6E-08 71.8 6.6 74 49-146 244-320 (349)
59 3zxq_A Hypoxia sensor histidin 96.9 0.0013 4.5E-08 59.7 6.5 44 49-95 39-84 (124)
60 1i58_A Chemotaxis protein CHEA 96.9 0.00035 1.2E-08 68.5 2.7 47 50-96 48-107 (189)
61 3ehh_A Sensor kinase (YOCF pro 96.7 0.0017 5.9E-08 64.6 6.4 43 50-95 131-176 (218)
62 3d36_A Sporulation kinase B; G 96.7 0.0013 4.4E-08 66.3 4.8 77 49-148 123-202 (244)
63 1b3q_A Protein (chemotaxis pro 96.1 0.0055 1.9E-07 67.7 6.4 47 51-97 108-167 (379)
64 3ke6_A Protein RV1364C/MT1410; 96.0 0.014 4.6E-07 65.1 8.8 84 50-166 298-386 (399)
65 4fpp_A Phosphotransferase; fou 94.9 0.014 4.9E-07 60.2 3.9 76 50-147 147-225 (247)
66 1ixm_A SPO0B, protein (sporula 79.7 2 6.9E-05 43.0 5.4 40 59-98 118-163 (192)
67 1mu5_A Type II DNA topoisomera 54.5 51 0.0017 37.3 10.6 77 284-376 351-433 (471)
68 2zbk_B Type 2 DNA topoisomeras 48.4 64 0.0022 37.1 10.3 85 284-384 350-441 (530)
69 1t6t_1 Putative protein; struc 37.8 14 0.00048 34.2 2.1 26 523-548 60-86 (118)
70 2fcj_A Small toprim domain pro 24.2 25 0.00085 32.6 1.3 39 523-568 49-87 (119)
71 2q2e_B Type 2 DNA topoisomeras 21.2 3.1E+02 0.011 32.1 10.0 82 284-376 353-440 (621)
72 3hqc_A Tensin-like C1 domain-c 20.2 88 0.003 30.3 4.3 49 39-91 19-71 (157)
No 1
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-168 Score=1545.14 Aligned_cols=538 Identities=24% Similarity=0.373 Sum_probs=448.7
Q ss_pred CCCCCccCceeccchhhhhhCCCeeeecCCCc----------------------CchhHHHHHHHHHHHhhhcCCC-CCe
Q psy13357 16 ESSYSASSIQILEGLEAVRKRPEMYIGDTSDG----------------------TGLHHLVFEILDNAIDESLAGY-CTK 72 (833)
Q Consensus 16 ~~~Y~~~~I~vLeglE~VRkRPgMYIGst~~~----------------------~GL~hlv~EIVdNsiDE~~aG~-~~~ 72 (833)
+..|.+++||+|+||||||||||||||||++. +|||||||||||||+||+++|+ |+.
T Consensus 4 ~~~~~~~~yq~L~~LE~VrkRPgMYIGst~~~~~~~~v~~~~~~~~~~~~vt~v~GL~hl~~EildNsiDea~ag~~~~~ 83 (1177)
T 4gfh_A 4 EPVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKR 83 (1177)
T ss_dssp ---CHHHHSEECCHHHHHHHCGGGTTCCCSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCE
T ss_pred CCCchhhcccccccchhhhcCCCCccccCCCCCcceeeeeccccccccccccccceeeeEeeEEEEChHhHHhhCCCCCe
Confidence 34577889999999999999999999999873 3999999999999999999997 699
Q ss_pred EEEEEec-CCeEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccceeEE
Q psy13357 73 INVTIYS-DNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLT 151 (833)
Q Consensus 73 I~V~I~~-DgsIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~~Ve 151 (833)
|.|+||. ||||||+||||||||++||+ +|+|+||+|||+||||||||+++|++||||||||+|||||||++|.|+
T Consensus 84 I~V~i~~~d~sisV~DnGRGIPvd~h~~----~~~~~~Evv~t~LhAGgKFd~~~ykvSGGLHGVG~svVNALS~~~~ve 159 (1177)
T 4gfh_A 84 IDVNIHAEEHTIEVKNDGKGIPIEIHNK----ENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILE 159 (1177)
T ss_dssp EEEEEETTTTEEEEEECSSCCCCSBCTT----TCSBHHHHHHHSSSEESCCCCSSCCCCSCCSSCHHHHHHHTEEEEEEE
T ss_pred EEEEEECCCCEEEEEecCCcccccccCC----CCCEeeeeeccccccccCcCCCCCeEeccCCChhhhHHhhcCCceEEE
Confidence 9999995 99999999999999999998 999999999999999999999999999999999999999999999998
Q ss_pred EE--eCCeEEEEEEEcccccccccccccccccCCceEecc--CCCCccEEEEEeCccccccccccHHHHHHHHHHhhccC
Q psy13357 152 IN--RNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGD--TNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLN 227 (833)
Q Consensus 152 v~--r~Gk~y~q~f~~G~~~~~~~~~~~~~~~~~l~~~g~--~~~~GT~V~F~PD~~iF~~~~~~~~~l~~RlrelA~Ln 227 (833)
|. |+|+.|+|+|++| .++.++..++. ..++||+|+||||++||++..|+++++..|++++|+||
T Consensus 160 v~~~r~Gk~y~q~f~~g------------~~~~~~~~i~~~~~~~tGT~V~F~PD~~iF~~~~~~~d~l~~~~r~~~~l~ 227 (1177)
T 4gfh_A 160 TADLNVGQKYVQKWENN------------MSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDIN 227 (1177)
T ss_dssp EEETTTTEEEEEEEETT------------TTEECCCEEEECCSSCCCEEEEEEECHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCEEEEEEEECC------------cccCCCCeeecCCCCCCceEEEEEeCHHhcCCcEeCHHHHHHHHHHHHHhc
Confidence 85 8999999999999 55544444443 34689999999999999999999999999999999988
Q ss_pred CC---cEEEEeecccceEEEEEeCCCcchhhhhhhcCCCccCCc-------eEEEeeccccccCCceEEEEeeeecCCCc
Q psy13357 228 NG---VCITLIDERIKKKEIFEFKGGTSGFVSYINKSKLVVHPT-------IFQAIGNKISEKKNNINIDVSMQWNNSYN 297 (833)
Q Consensus 228 pG---l~I~l~der~~~~~~f~~~~Gl~~fv~~l~~~k~~l~~~-------~i~~~~e~~~~~~~~i~veval~~~d~~~ 297 (833)
+| +.+.+++++. ..++|++|+.+|+++++..+...+.. +..+..+. .+..||||++|++++.
T Consensus 228 ~~~~~~~~~~~g~~~---~~~~f~~gi~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~e~-----~~~~~eva~~~~d~~~ 299 (1177)
T 4gfh_A 228 GSVRDINVYLNGKSL---KIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYER-----INNRWEVAFAVSDISF 299 (1177)
T ss_dssp HHSSSCEEEESSCBC---CCCSHHHHHGGGTTTC-----------------CCSCEEEE-----EETTEEEEEEECSSSC
T ss_pred CCCceEEEEecCCee---EEeeccchhhhhhhhhccceeccccccccccCCCceEEEEe-----ccceEEEeecccCCcc
Confidence 55 6678887764 46889999999999987655433321 11111222 3466999999998764
Q ss_pred ceeEEeecceeccCCcchHHHHHHHHHHHHHHHHHHcccccccCCCCCHHHHhhcceeEEEEeecCCCCCcccccccccc
Q psy13357 298 ENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSS 377 (833)
Q Consensus 298 e~i~SFVN~I~T~~GGTHv~gf~~altr~in~y~~~~~l~Kk~k~~l~~~DIregL~avIsvki~nP~FegQTK~kL~n~ 377 (833)
.++||||+|+|++||||++||++||+++||+|+.+ +++.+++++|||+||+|||||+++||||+||||+||+|+
T Consensus 300 -~~~SFvN~I~T~~GGTHv~gfr~altr~in~~~~k-----~~~~~~~~~DIregl~avISvki~~PqFegQTK~kL~s~ 373 (1177)
T 4gfh_A 300 -QQISFVNSIATTMGGTHVNYITDQIVKKISEILKK-----KKKKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTR 373 (1177)
T ss_dssp -EEEEEESSCEETTEEHHHHHHHHHHHHHHHHHHHH-----HSSSCCCHHHHHTTEEEEEEECCSSCCBSSTTCCEECCC
T ss_pred -eeeeeeeeeecCCCchHHHHHHHHHHHHHHHHhhh-----hccccCCHHHHhCCceEEEEeeeccCccccchhhhhcCc
Confidence 46799999999999999999999999999999864 334579999999999999999999999999999999998
Q ss_pred ccchhhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHhHHhhhcccccccccccccccccC---CCCCCceEE
Q psy13357 378 EVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDDIELSTKLADCQ---EKNPELCEL 454 (833)
Q Consensus 378 ev~~~v~~~v~~~l~~~l~~np~~ak~Ii~ki~~~a~ar~aa~kar~~~r~k~~~~~~~lpgKL~dc~---~kd~~~~eL 454 (833)
.....+...+. ..|+. +.....|+++++++|++|+++++++...++|+.+ .++| ||+||+ ++||++|||
T Consensus 374 ~~~~~~~~~~~---~~~~~--~~~~~~i~~~~~~~a~~~~~~~~~k~~~~~k~~~--~~~~-KL~d~~~~~skd~~~~EL 445 (1177)
T 4gfh_A 374 VKDFGSRCEIP---LEYIN--KIMKTDLATRMFEIADANEENALKKSDGTRKSRI--TNYP-KLEDANKAGTKEGYKCTL 445 (1177)
T ss_dssp GGGSSSCCCCC---HHHHH--HHTTSHHHHHHHHHHTTCC------------CCC--CSCT-TCBCCTTTTTTTTTTCEE
T ss_pred hhcceeeccch---HHHhh--hhhhHHHHHHHHHHHHHHHHHHHHhhhhhcchhh--cccc-ccccccccCCCCccceEE
Confidence 55433322111 12332 2233468888888888877666666655555543 2344 888887 689999999
Q ss_pred EEeecCCCcccccccc---CCcceeecccCcccccccccchhHhhccHhHHHHHHHhCCCCCCCCCCcCCCCCCceeecc
Q psy13357 455 YIVEGDSAGGSVKQGR---DRRFQAVLPLRGKVLNIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMT 531 (833)
Q Consensus 455 flvEGDSAgGsak~gR---dr~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li~alG~g~~~~~~~~~~LRY~kIiImT 531 (833)
|||||||||||||+|| +|+|||||||||||||||||+.+||++|+||++|++|||||+|++.+|+++||||||||||
T Consensus 446 fiVEGDSAgGsAk~Grak~~Rd~QAIlPLRGKiLNv~ka~~~kil~N~EI~~ii~alG~g~g~~~~d~~~LRY~KIiIMT 525 (1177)
T 4gfh_A 446 VLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMT 525 (1177)
T ss_dssp EEEEHHHHHHHHHHHHHHHCSTTEEEEEECSSCCCCTTCCHHHHHHCHHHHHHHHHTTCCCSSCCCCGGGSSCSEEEEEC
T ss_pred EEecCCchhhhHhhcccccCcccEEecccCceechhhhhHHHHHhhcHHHHHHHHHhCCCcCcccCccccCCCCeEEEee
Confidence 9999999999999999 8999999999999999999999999999999999999999999654599999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHhcHhhhh-cCcEEEEcCcEEEEEeCC---cceeecCHHHHHHHHH
Q psy13357 532 DADIDGAHIRALLLTFFYRKMPKLIE-YGYIYIAQPPLYKIKYGN---NECYLRDDIEEERYML 591 (833)
Q Consensus 532 DADvDGsHI~~Llltff~r~~p~Li~-~G~vyia~pPLykv~~gk---~~~y~~~~~e~~~~~~ 591 (833)
||||||+|||||||||||||||+||+ +||||+|+||||||+.|| ...|||+++|+++|..
T Consensus 526 DADvDGsHIrtLLltfF~r~~p~Lie~~G~vyia~pPLykv~~~k~~k~~~~~y~~~e~e~~~~ 589 (1177)
T 4gfh_A 526 DQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWRE 589 (1177)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSTTSTTSTTCEEEECCCSEEEEECSSSCCEEEESSHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHhChhhEeeCCEEEEEecceEEEEEecCCcceEEEechHHHHHHHH
Confidence 99999999999999999999999999 899999999999998654 4579999999999864
No 2
>3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli}
Probab=100.00 E-value=6e-127 Score=1041.31 Aligned_cols=409 Identities=44% Similarity=0.775 Sum_probs=323.9
Q ss_pred HhHHhhhcccccccccccccccccCCCCCCceEEEEeecCCCccccccccCCcceeecccCcccccccccchhHhhccHh
Q psy13357 421 KTRELTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQ 500 (833)
Q Consensus 421 kar~~~r~k~~~~~~~lpgKL~dc~~kd~~~~eLflvEGDSAgGsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~N~E 500 (833)
+||+++|||++++.++|||||+||+++||+.|||||||||||||||||||||+||||||||||||||+|++.+||++|+|
T Consensus 3 ~are~~rrk~~~~~~~lpgKLaDc~~kd~~~~eLflvEGDSAgGsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~n~E 82 (420)
T 3nuh_B 3 AAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 82 (420)
T ss_dssp ---------------CCBTTBBCCSCCSTTSCEEEEEEHHHHHHHHHHHSCTTTEEEEEECC-------------CCCHH
T ss_pred HHHHHHHhhcccccCCCCccccccccCCccceeEEEEeccccccccccccccccccccccCCcchhHhhccHHHHhcCHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCcCCCCCCceeeccCCCCCchhHHHHHHHHHHHhcHhhhhcCcEEEEcCcEEEEEeCCcceee
Q psy13357 501 ITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYL 580 (833)
Q Consensus 501 i~~li~alG~g~~~~~~~~~~LRY~kIiImTDADvDGsHI~~Llltff~r~~p~Li~~G~vyia~pPLykv~~gk~~~y~ 580 (833)
|++||+|||||+|+++||+++||||||||||||||||+|||||||||||||||+||++||||+|+||||||++||++.||
T Consensus 83 i~~ii~alG~~~g~~~~~~~~LRY~kIiIMTDaDvDGsHIr~LLltff~r~~p~Li~~G~vyia~pPL~kv~~gk~~~y~ 162 (420)
T 3nuh_B 83 VATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYI 162 (420)
T ss_dssp HHHHHHHHC-------------CCSEEEECCCSSTTTTHHHHHHHHHHHHHCHHHHHTTCEEEECCCSEEEEETTEEEEE
T ss_pred HHHHHHHhCCCCCcCCCChhhcCcCeEEEecCCCCCcccchhHHHHHHHHHhHHHHHCCcEEEecCceEEEEcCCeEEEe
Confidence 99999999999997789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHhhcccceEeecCCCCccChHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHhcccCC---CCChHHH
Q psy13357 581 RDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILN---LDTRENA 657 (833)
Q Consensus 581 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~ 657 (833)
|||+|+++|+.+.+++++.|+..++++.++|++|.+++..+..++.++++++++++..++++++..+.+. +.+.+.+
T Consensus 163 ~~~~e~~~~~~~~al~~~~l~~~~~~~~~~g~~L~~l~~~~~~~~~~i~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 242 (420)
T 3nuh_B 163 KDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTV 242 (420)
T ss_dssp CCHHHHHHHHHHHHHTTEEEEESSSCSEEEHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHSCCCCHHHHHCHHHH
T ss_pred CCHHHHHHHHhhccccCeEEEeCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHhcccCChhhhcCHHHH
Confidence 9999999999999999999998888889999999999999999999999999999999999999888776 6777888
Q ss_pred HHHHHHHHHHhcc-----CCeEEEEEeecccceEEEEEEEe-eCceeeEEecccccCCHHHHHHHHHHHHHHhhhcCCeE
Q psy13357 658 EQFAKKIIKKLND-----SNIEIIVEFDQLNNKYLLNIKKK-FLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVI 731 (833)
Q Consensus 658 ~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (833)
.+|+..+.+++.. ..|.+.+..+++...+.+.+.+. +|+...+.++.+|+.|++|+++..+++.+.++++.++.
T Consensus 243 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~~~~~~l~~~~~~s~ey~~l~~~~~~l~~~~~~~~~ 322 (420)
T 3nuh_B 243 TRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAF 322 (420)
T ss_dssp HHHHHHHHHHHHHHCCSSCEEEEEEEECC---CEEEEEEEECSSSEEEEECCHHHHHSHHHHHHHHHHHHHHHTTTTSEE
T ss_pred HHHHHHHHHHhhhccccccceEEEEeecccCcceeEEEEEEecCcceEEEEChHHhcCHHHHHHHHHHHHHHHhhcCCcE
Confidence 9999998887642 23676665554444555666644 58888999999999999999999999999999999988
Q ss_pred EEcccccccceeeecCHHHHHHHHHHhccCCccceeeccCCCCCccchhhhccCcCceeEEeeeeccHHHHHHHHHHhcC
Q psy13357 732 IQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMG 811 (833)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iqRyKGLGEMn~~qLweTtm~P~~R~l~~v~i~da~~a~~~f~~LMG 811 (833)
+.++ + +..++.++.++++||++.+++|++||||||||||||||||||||||++|+||||+|+||++||++|++|||
T Consensus 323 i~~~--~--~~~~v~~~~~~~~~l~~~~~kG~~IQRYKGLGEMNpeQLWETTMdP~~R~LLqV~IeDa~~AD~iFt~LMG 398 (420)
T 3nuh_B 323 IERG--E--RRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMG 398 (420)
T ss_dssp EEES--S--CEEEESSHHHHHHHHHHHHTTTCEEEECSCGGGSCHHHHHHHHTCTTTCCEEECCHHHHHHHHHHHHHHCS
T ss_pred EEeC--C--cceecCCHHHHHHHHHHHhhccceeeeeccCCCCChhhhhhcccCcccceEEEEEehhHHHHHHHHHHhcC
Confidence 8887 4 56789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhhhccccCCC
Q psy13357 812 DNVELRRKFIELNALHAKNIDI 833 (833)
Q Consensus 812 ~~v~~Rr~fI~~~a~~~~~ldi 833 (833)
|+|||||+|||+||++|+||||
T Consensus 399 D~VEPRR~FIe~NAL~V~nLDi 420 (420)
T 3nuh_B 399 DAVEPRRAFIEENALKAANIDI 420 (420)
T ss_dssp CC--------------------
T ss_pred CCchHhHHHHHhhhcccccCCC
Confidence 9999999999999999999997
No 3
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=100.00 E-value=5.5e-114 Score=961.31 Aligned_cols=384 Identities=34% Similarity=0.598 Sum_probs=325.5
Q ss_pred CCCCccCceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCCeEEEEECCCCccccc
Q psy13357 17 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDI 96 (833)
Q Consensus 17 ~~Y~~~~I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~DgsIsV~DnGrGIPv~~ 96 (833)
++|+|++|++|+||||||||||||||||++ ||||||||||||||+++|+|+.|.|+|+.||+|+|+|||||||+++
T Consensus 22 ~~Y~a~~I~vL~glE~VRkRPgMYiGst~~----~hlv~EivdNsiDea~ag~~~~I~V~i~~dgsI~V~DnGrGIPv~~ 97 (408)
T 3lnu_A 22 TRYNAADIEVLSGLDPVKRRPGMYTDTARP----NHLAQEVIDNSVDEALAGHAKQIEVTLYKDGSCEVSDDGRGMPVDI 97 (408)
T ss_dssp ------------CCHHHHHCGGGTSCTTST----HHHHHHHHHHHHHHHHTTSCCEEEEEECTTSCEEEEECSSCCCCSB
T ss_pred CCcCHhHceeccccHHHhcCCccEECCCCc----chhhHHHHHHHHHHhhcCCCceEEEEEeCCCeEEEEEcCCCCCccc
Confidence 579999999999999999999999999875 9999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccceeEEEEeCCeEEEEEEEcccccccccccc
Q psy13357 97 KIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTI 176 (833)
Q Consensus 97 h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~Gk~y~q~f~~G~~~~~~~~~~ 176 (833)
||+ +|+|++|+|||+||||||||++.|++||||||||+|||||||+||+|+|+|+|+.|+|+|++|
T Consensus 98 h~~----~~~~~~e~i~t~lhaggKfd~~~ykvSgGlhGvG~svVNALS~~l~v~v~rdGk~~~q~f~~G---------- 163 (408)
T 3lnu_A 98 HPE----EKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVNALSTKVELFIKREGSEHRMEFRDG---------- 163 (408)
T ss_dssp CTT----TCSBHHHHHHHCC--------------------CHHHHHHTEEEEEEEEEETTEEEEEEEETT----------
T ss_pred ccc----cCCcchheEEEecccCCCcCCCceeecCCccccccceehhccCeEEEEEEECCEEEEEEECCC----------
Confidence 998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCceEeccC--CCCccEEEEEeCccccccccccHHHHHHHHHHhhccCCCcEEEEeecccceEEEEEeCCCcchh
Q psy13357 177 NGISVSPIKIIGDT--NKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGF 254 (833)
Q Consensus 177 ~~~~~~~l~~~g~~--~~~GT~V~F~PD~~iF~~~~~~~~~l~~RlrelA~LnpGl~I~l~der~~~~~~f~~~~Gl~~f 254 (833)
.+++|+.++|.+ .++||+|+||||+++|++..|+++.|.+||+++|||||||+|+|+|+|.+++++|+|++||++|
T Consensus 164 --~~~~~l~~ig~~~~~~~GT~V~F~PD~~iF~~~~f~~~~l~~rlrelA~Ln~Gv~I~l~der~~~~~~f~yegGi~~y 241 (408)
T 3lnu_A 164 --NAASKLEVVGTVGKKNTGTRLRFWADPKYFDTPKFNVRALRHLLRAKAVLCPGLTVKLHDEATGEQDSWYFENGLRDY 241 (408)
T ss_dssp --EECSCCEEEEECCTTCCEEEEEEEECGGGSSCSCCCHHHHHHHHHHHHHHSTTCEEEEEETTTCCEEEEECSSSHHHH
T ss_pred --EECCCceEeccCcCCCCCcEEEEEECHHHhCCCCcCHHHHHHHHHHHHhhcCCCEEEEEeccCCceeEEEcCchHHHH
Confidence 788898888766 4799999999999999988999999999999999999999999999998877899999999999
Q ss_pred hhhhhcCCCccCCceEEEeeccccccCCc-eEEEEeeeecCCCcceeEEeecceeccCCcchHHHHHHHHHHHHHHHHHH
Q psy13357 255 VSYINKSKLVVHPTIFQAIGNKISEKKNN-INIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEE 333 (833)
Q Consensus 255 v~~l~~~k~~l~~~~i~~~~e~~~~~~~~-i~veval~~~d~~~e~i~SFVN~I~T~~GGTHv~gf~~altr~in~y~~~ 333 (833)
|++++.++.++++.++ +.++. ++ +.||||+||+++|+++++||||||+|++||||++||++||+++||+|+++
T Consensus 242 v~~l~~~k~~~~~~~~-~~~~~-----~~~~~ve~Al~~~~~~~e~~~SFvN~I~T~~GGTH~~gfr~altr~in~y~~~ 315 (408)
T 3lnu_A 242 LKGEMAEHEMLPADLF-VGSLK-----KDTEIVDWAAGWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCDF 315 (408)
T ss_dssp HHHHTTTSCCEEEEEE-EEEEE-----CSSCEEEEEEEECSSSCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcCCCCCe-EeeEe-----cCceeEEEEEEEcCCCCeEEEEEeCCcCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999988887776554 34444 56 89999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCHHHHhhcceeEEEEeecCCCCCccccccccccccchhhHHHHHHHHHHHHHhCchhhHHHHHHHHHHH
Q psy13357 334 NEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAA 413 (833)
Q Consensus 334 ~~l~Kk~k~~l~~~DIregL~avIsvki~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~ak~Ii~ki~~~a 413 (833)
.+++|++ .+++++||||||+|||||++|||||+||||+||+|++++++|+++|.+.|..||++||+.|+.|++|++.+|
T Consensus 316 ~~l~kk~-~~l~~~DiregL~aviSvkv~~PqFegQTK~kL~n~ev~~~V~~~v~~~l~~~l~enp~~ak~i~~k~i~aa 394 (408)
T 3lnu_A 316 RNLLPRG-VKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAAHDAFSLYLNQNVEIGEKIAQIAIDRA 394 (408)
T ss_dssp TTCCCTT-CCCCHHHHHTTEEEEEEEECSSCCEESTTSCEECCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hCcccCC-CCCCHHHHhhCeEEEEEEEcCCCcccCcccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 9988875 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHhhhcc
Q psy13357 414 RSREAARKTRELTRKK 429 (833)
Q Consensus 414 ~ar~aa~kar~~~r~k 429 (833)
+||+ ||||+++|||
T Consensus 395 ~aR~--rkare~~rrK 408 (408)
T 3lnu_A 395 SARL--KTEKQIVRKK 408 (408)
T ss_dssp HTC-------------
T ss_pred HHHH--HHHHHHhccC
Confidence 9996 9999999876
No 4
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=2.2e-109 Score=925.80 Aligned_cols=388 Identities=55% Similarity=0.935 Sum_probs=373.8
Q ss_pred CCCCccCceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCCeEEEEECCCCccccc
Q psy13357 17 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDI 96 (833)
Q Consensus 17 ~~Y~~~~I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~DgsIsV~DnGrGIPv~~ 96 (833)
++|++++|++|+||||||||||||||||+..+||||+|||||||||||+++|+|+.|.|+|+.||+|+|+|||||||++.
T Consensus 2 ~~y~~~~i~~L~gle~vrkRPgmYiGst~~~~gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~~g~I~V~DnG~GIp~~~ 81 (391)
T 1ei1_A 2 NSSDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGI 81 (391)
T ss_dssp CCCSGGGCEECCTTHHHHHCTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTSCEEEEECSSCCCCSB
T ss_pred CCCCHHHCEECchhHHHHcCCCeEECCCCCCcCHHHHHHHHHHhHHHHHhcCCCCEEEEEEeCCCEEEEEECCCCcccCc
Confidence 36999999999999999999999999999833999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccceeEEEEeCCeEEEEEEEcccccccccccc
Q psy13357 97 KIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTI 176 (833)
Q Consensus 97 h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~Gk~y~q~f~~G~~~~~~~~~~ 176 (833)
||+ +|+|++|+|||+|||||||+++.|++||||||+|+|+|||||++|+|+++|+|+.|+|+|++|
T Consensus 82 ~~~----~~~~~~elv~~~lhagsKf~~~~~~vSgGl~GvGls~vnalS~~l~v~~~r~g~~~~~~~~~G---------- 147 (391)
T 1ei1_A 82 HPE----EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHG---------- 147 (391)
T ss_dssp CTT----TSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETT----------
T ss_pred ccc----cCcchHHHhheeccccCCcCCCcccccCCccccchHHHHHhcCeEEEEEEeCCcEEEEEEcCC----------
Confidence 998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCceEeccCCCCccEEEEEeCcccccc-ccccHHHHHHHHHHhhccCCCcEEEEeecccceEEEEEeCCCcchhh
Q psy13357 177 NGISVSPIKIIGDTNKQGTKIHFWVDEKIFSN-IEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFV 255 (833)
Q Consensus 177 ~~~~~~~l~~~g~~~~~GT~V~F~PD~~iF~~-~~~~~~~l~~RlrelA~LnpGl~I~l~der~~~~~~f~~~~Gl~~fv 255 (833)
.+++|+.+++.+.++||+|+|+||+++|.+ ..|+++.|.+||+++|||||||+|+|+|++.++++.|+|++|+.+|+
T Consensus 148 --~~~~~l~~~~~~~~~GT~V~f~Pd~~~F~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~d~~~~~~~~f~~~gGl~~~v 225 (391)
T 1ei1_A 148 --VPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDGKEDHFHYEGGIKAFV 225 (391)
T ss_dssp --EESSCCEEEEECSCCEEEEEEEECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTCCEEEECCCSHHHHHH
T ss_pred --cccccceeccCcCCCccEEEEEEChhhhCCccccCHHHHHHHHHHhcccCCCcEEEEEcCCCcceEEEEcCchHHHHH
Confidence 777888777777789999999999999988 89999999999999999999999999999977678999999999999
Q ss_pred hhhhcCCCccCCceEEEeeccccccCCceEEEEeeeecCCCcceeEEeecceeccCCcchHHHHHHHHHHHHHHHHHHcc
Q psy13357 256 SYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENE 335 (833)
Q Consensus 256 ~~l~~~k~~l~~~~i~~~~e~~~~~~~~i~veval~~~d~~~e~i~SFVN~I~T~~GGTHv~gf~~altr~in~y~~~~~ 335 (833)
.+++..+.++++++++++++. +++.|++|++|+++|.++++||||+|+|++||||++||++||+++||+|+++.+
T Consensus 226 ~~l~~~~~~~~~~~i~~~~~~-----~~i~veva~~~~~~~~e~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~ 300 (391)
T 1ei1_A 226 EYLNKNKTPIHPNIFYFSTEK-----DGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 300 (391)
T ss_dssp HHHHHTSCBSSSCCEEEEEEE-----TTEEEEEEEEEBSSCCEEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCCcccccccEEEEEec-----CCEEEEEEEEccCCCCeeEEEEEcceecCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 999988888998899998877 789999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCHHHHhhcceeEEEEeecCCCCCccccccccccccchhhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH
Q psy13357 336 FLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARS 415 (833)
Q Consensus 336 l~Kk~k~~l~~~DIregL~avIsvki~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~ak~Ii~ki~~~a~a 415 (833)
++|+.+.+++++|||+||+|||||++|||||+||||+||+|++++++|+++|.+.|..||++||+.|+.|++|++.+|+|
T Consensus 301 l~k~~~~~~~~~dvregl~avisvki~~P~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~aa~a 380 (391)
T 1ei1_A 301 YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARA 380 (391)
T ss_dssp HHHHHCCCCCHHHHTTTEEEEEEEECSSCCBSSTTCCSBCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred cccccCCccCHHHHhhccEEEEEEecCCCCcCCcccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 98887788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHh
Q psy13357 416 REAARKTREL 425 (833)
Q Consensus 416 r~aa~kar~~ 425 (833)
|+||||||++
T Consensus 381 r~aa~kare~ 390 (391)
T 1ei1_A 381 REAARRAREM 390 (391)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHhhhc
Confidence 9999999986
No 5
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=1.7e-105 Score=894.65 Aligned_cols=382 Identities=31% Similarity=0.569 Sum_probs=362.7
Q ss_pred CCCCccCceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCCeEEEEECCCCccccc
Q psy13357 17 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDI 96 (833)
Q Consensus 17 ~~Y~~~~I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~DgsIsV~DnGrGIPv~~ 96 (833)
++|++++|++|+||||||||||||||||+. ||+|+|||||||||+++|+|+.|.|+|+.||+|+|+|||||||++.
T Consensus 3 ~~y~~~~i~~L~gle~vr~RPgmYiGs~~~----~~lv~ElvdNsiD~a~~g~a~~I~V~i~~~g~I~V~DnG~GIp~~~ 78 (390)
T 1s16_A 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTRP----NHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDI 78 (390)
T ss_dssp -CCSGGGCEECCTTHHHHHCGGGTSCTTST----HHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCSB
T ss_pred CCCCHHHcEEcchhHHHhhCCceeecCCcH----HHHHHHHHHHHHHHHhcCCCCEEEEEEecCCEEEEEECCCCcCccc
Confidence 469999999999999999999999999986 9999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccceeEEEEeCCeEEEEEEEcccccccccccc
Q psy13357 97 KIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTI 176 (833)
Q Consensus 97 h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~Gk~y~q~f~~G~~~~~~~~~~ 176 (833)
||+ +|+|++|+|||+|||||||+++.|++||||||+|+|+|||||++|+|+++|+|+.|+|+|++|
T Consensus 79 ~~~----~~~~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls~vnalS~~l~v~~~r~g~~~~~~~~~G---------- 144 (390)
T 1s16_A 79 HPE----EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENG---------- 144 (390)
T ss_dssp CTT----TCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETT----------
T ss_pred ccc----cCcchhhheeeeecccCCcCCCcccccCCccccchHHHHHhhcccEEEEEECCcEEEEEEeCC----------
Confidence 998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCceEeccCC--CCccEEEEEeCccccccccccHHHHHHHHHHhhccCCCcEEEEeecccceEEEEEeCCCcchh
Q psy13357 177 NGISVSPIKIIGDTN--KQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGF 254 (833)
Q Consensus 177 ~~~~~~~l~~~g~~~--~~GT~V~F~PD~~iF~~~~~~~~~l~~RlrelA~LnpGl~I~l~der~~~~~~f~~~~Gl~~f 254 (833)
.++.++.+++.+. ++||+|+|+||+.+|.+..|+++.|.+||+++|+|||||+|+|+|++.+.++.|+|++|+.+|
T Consensus 145 --~~~~~~~~~g~~~~~~~GT~V~f~Pd~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~~~~~f~~~gGl~~~ 222 (390)
T 1s16_A 145 --EKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDY 222 (390)
T ss_dssp --EEEEEEEEEEECCTTCCEEEEEEEECGGGSSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTTEEEEECCSSCHHHH
T ss_pred --cccccceecccccCCCCceEEEEEECccccCcccccHHHHHHHHHHHHhcCCCcEEEEEeCCCceeEEEEcCCcHHHH
Confidence 7777777777655 799999999999999888999999999999999999999999999997667899999999999
Q ss_pred hhhhhcCCCccCCceEEEeeccccccCCceEEEEeeee-cCCCcceeEEeecceeccCCcchHHHHHHHHHHHHHHHHHH
Q psy13357 255 VSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQW-NNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEE 333 (833)
Q Consensus 255 v~~l~~~k~~l~~~~i~~~~e~~~~~~~~i~veval~~-~d~~~e~i~SFVN~I~T~~GGTHv~gf~~altr~in~y~~~ 333 (833)
+.+++.++.+++++++++.++. +++.|++|++| +++|.++++||||+|+|++||||++||++||+++||+|+++
T Consensus 223 v~~l~~~~~~~~~~~i~~~~~~-----~~~~ve~a~~~~~~~~~~~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~ 297 (390)
T 1s16_A 223 LAEAVNGLPTLPEKPFIGNFAG-----DTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEY 297 (390)
T ss_dssp HHHHHTTSCCEEEEEEEEEEEC-----SSEEEEEEEEECTTCCCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcccCCCcEEEEEee-----CCEEEEEEEEeccCCCCceEEEEECCEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999987777888899998877 78999999999 99999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCHHHHhhcceeEEEEeecCCCCCccccccccccccchhhHHHHHHHHHHHHHhCchhhHHHHHHHHHHH
Q psy13357 334 NEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAA 413 (833)
Q Consensus 334 ~~l~Kk~k~~l~~~DIregL~avIsvki~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~ak~Ii~ki~~~a 413 (833)
.+++| .+.+++++|||+||+|||||++|||||+||||+||+|++++++|+++|.+.|..||++||+.|+.|++|++.+|
T Consensus 298 ~~~~k-~~~~l~~~dvregl~avisvki~~P~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~aa 376 (390)
T 1s16_A 298 RNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSA 376 (390)
T ss_dssp TTCSC-TTCCCCHHHHHTTEEEEEEEEESSCCBSSTTCCCBCCTHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hCcCc-cCCccCHHHHhhccEEEEEeecCCCCccccccchhcChhHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 99988 66789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHH
Q psy13357 414 RSREAARKTRE 424 (833)
Q Consensus 414 ~ar~aa~kar~ 424 (833)
+||+||||||+
T Consensus 377 ~aR~aa~kare 387 (390)
T 1s16_A 377 QRRMRAAKKVV 387 (390)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHHHHh
Confidence 99999999998
No 6
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=3e-99 Score=845.10 Aligned_cols=387 Identities=41% Similarity=0.720 Sum_probs=366.4
Q ss_pred CCCccCceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCCeEEEEECCCCcccccc
Q psy13357 18 SYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDIK 97 (833)
Q Consensus 18 ~Y~~~~I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~DgsIsV~DnGrGIPv~~h 97 (833)
+|++++|++|+|+||||||||||||||+. +|++|+|+|+|+||+|++++++|+.|.|+++.||+|+|+|||+|||++.|
T Consensus 2 ~y~~~~i~~l~~le~vr~rpgmyiGs~~~-~g~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~~~~i~V~DnG~GIp~~~~ 80 (390)
T 1kij_A 2 SYDASAIRVLKGLEGVRHRPAMYIGGTGV-EGYHHLFKEILDNAVDEALAGYATEILVRLNEDGSLTVEDNGRGIPVDLM 80 (390)
T ss_dssp -----CCEECCTTHHHHHCTHHHHSCSSH-HHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTSCEEEEECSSCCCCSEE
T ss_pred CCCHHHCEEcchhHHHhcCCCcEEccCCc-chHHHHHHHHHHHHHHHhhhCCCCEEEEEEEcCCEEEEEEcCCCCCHHHh
Confidence 69999999999999999999999999998 89999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccceeEEEEeCCeEEEEEEEccccccccccccc
Q psy13357 98 IDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTIN 177 (833)
Q Consensus 98 ~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~Gk~y~q~f~~G~~~~~~~~~~~ 177 (833)
+. +|+|++|+||+++|+|+||+++.|++|||+||+|+++||++|++++|+++++|+.|+|+|++|
T Consensus 81 ~~----~~~~~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v~als~~~~v~t~~~g~~~~~~~~~G----------- 145 (390)
T 1kij_A 81 PE----EGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVNALSEWTVVEVFREGKHHRIAFSRG----------- 145 (390)
T ss_dssp TT----TTEEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHHHTEEEEEEEEEETTEEEEEEEETT-----------
T ss_pred hh----ccccchhhheeeeeecccccCccccccCCCCCcceeeecccccceEEEEecCCcEEEEEEcCC-----------
Confidence 98 899999999999999999999899999999999999999999999999999999999999999
Q ss_pred ccccCCceEeccC--CCCccEEEEEeCccccccccccHHHHHHHHHHhhccCCCcEEEEeecccceEEEEEeCCCcchhh
Q psy13357 178 GISVSPIKIIGDT--NKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFV 255 (833)
Q Consensus 178 ~~~~~~l~~~g~~--~~~GT~V~F~PD~~iF~~~~~~~~~l~~RlrelA~LnpGl~I~l~der~~~~~~f~~~~Gl~~fv 255 (833)
.+..++..++.+ .++||+|+|+||+.+|.+..|+++.|.+||+++|+||||++|+|+|++.+.++.|+|++|+.+|+
T Consensus 146 -~~~~~~~~~~~~~~~~~GT~V~f~Pd~~~F~~~~~~~~~l~~rl~~~A~lnpgv~i~l~d~~~~~~~~f~~~~Gl~~~v 224 (390)
T 1kij_A 146 -EVTEPLRVVGEAPRGKTGTRVTFKPDPEIFGNLRFDPSKIRARLREVAYLVAGLKLVFQDRQHGKEEVFLDKGGVASFA 224 (390)
T ss_dssp -EEEEEEEEEEECGGGCCEEEEEEEECHHHHTTCCCCHHHHHHHHHHHHHHTTTCEEEEEEGGGTEEEEECCTTHHHHHH
T ss_pred -cccccceeeccccCCCCCcEEEEEEChHHhCCccccHHHHHHHHHHhcCcCCCcEEEEEeCCCcceEEEEcCCcHHHHH
Confidence 666666666655 67999999999999998889999999999999999999999999999976678999999999999
Q ss_pred hhhhcCCCccCCceEEEeeccccccCCceEEEEeeeecCCCcceeEEeecceeccCCcchHHHHHHHHHHHHHHHHHHcc
Q psy13357 256 SYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENE 335 (833)
Q Consensus 256 ~~l~~~k~~l~~~~i~~~~e~~~~~~~~i~veval~~~d~~~e~i~SFVN~I~T~~GGTHv~gf~~altr~in~y~~~~~ 335 (833)
.+++..+.++++++++++++. +++.|++|++|+++|.++++||||+|+|++||||++||++||++++|+|+++.+
T Consensus 225 ~~l~~~~~~~~~~~i~~~~~~-----~~i~ve~a~~~~~~~~~~~~sFvN~i~t~~GGTH~~g~~~alt~~i~~~~~~~~ 299 (390)
T 1kij_A 225 KALAEGEDLLYEKPFLIRGTH-----GEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKAG 299 (390)
T ss_dssp HHHTTTSCBSCSSCEEEEEEE-----TTEEEEEEEEEBSSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCCCcCCCCcEEEEeec-----CCeEEEEEEEecCCCCceEEEEEcCeeeCCCCchhHHHHHHHHHHHHHHHHHhC
Confidence 999988888888899998877 789999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCHHHHhhcceeEEEEeecCCCCCccccccccccccchhhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH
Q psy13357 336 FLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARS 415 (833)
Q Consensus 336 l~Kk~k~~l~~~DIregL~avIsvki~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~ak~Ii~ki~~~a~a 415 (833)
++|+.+.+++++|||+||+|||||++|||||+||||+||+|++++++|+++|.+.|..||++||+.|+.|++|++.+|+|
T Consensus 300 l~k~~~~~l~~~dvregl~avisvki~~P~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~~~~a 379 (390)
T 1kij_A 300 LNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQVVYERLLEILEENPRIAKAVYEKALRAAQA 379 (390)
T ss_dssp CCCSSSCCCCTTTTTTTEEEEEEEECSSCCBCSTTCCSBCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCcCHHHHhhhcEEEEEeecCCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 99887789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHhh
Q psy13357 416 REAARKTRELT 426 (833)
Q Consensus 416 r~aa~kar~~~ 426 (833)
|+||||||+++
T Consensus 380 R~aa~kare~~ 390 (390)
T 1kij_A 380 REAARKARELV 390 (390)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHhhhcC
Confidence 99999999863
No 7
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C*
Probab=100.00 E-value=2.7e-100 Score=789.39 Aligned_cols=242 Identities=53% Similarity=0.791 Sum_probs=210.2
Q ss_pred hhhcccccccccccccccccCCCCCCceEEEEeecCCCccccccccCCcceeecccCcccccccccchhHhhccHhHHHH
Q psy13357 425 LTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQITTL 504 (833)
Q Consensus 425 ~~r~k~~~~~~~lpgKL~dc~~kd~~~~eLflvEGDSAgGsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~l 504 (833)
..|||++++.++|||||+||+++||++|||||||||||||||||||||+||||||||||||||++++.++|++|+||++|
T Consensus 21 ~~rrk~~~~~~~lpgKLaDc~~kd~~~~eLflvEGDSAgGsakqgRdr~~QailPLRGKiLNv~ka~~~ki~~N~Ei~~i 100 (268)
T 3k9f_C 21 DKHMKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTM 100 (268)
T ss_dssp ---------------CCBCCSSCCTTSCEEEEEECHHHHHHHHHSSCTTTEEEEEECSSCCCTTSSCHHHHHTCHHHHHH
T ss_pred hhhhhhccccCCCCccccCcccCCCCceeEEEeeeecccccccccCccccccccccCCcchhhhcCCHHHHhhCHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCCCCcCCCCCCceeeccCCCCCchhHHHHHHHHHHHhcHhhhhcCcEEEEcCcEEEEEeCCcc----eee
Q psy13357 505 ISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNE----CYL 580 (833)
Q Consensus 505 i~alG~g~~~~~~~~~~LRY~kIiImTDADvDGsHI~~Llltff~r~~p~Li~~G~vyia~pPLykv~~gk~~----~y~ 580 (833)
|+|||||+| ++||+++||||||||||||||||+|||||||||||||||+||++||||+|+||||||++||+. .|+
T Consensus 101 i~alG~g~g-~~~d~~~LRY~kIiIMTDADvDGsHI~~LLltff~r~~p~Li~~G~vyia~pPLykv~~gk~~~~~~~Y~ 179 (268)
T 3k9f_C 101 IYTIGAGVG-ADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 179 (268)
T ss_dssp HHHHCSCC---CCCCC-CCCSEEEEECCSSHHHHHHHHHHHHHHHHTSHHHHHTTCEEEECCCSEEEEC-CGGGCCEEEE
T ss_pred HHHhCCCCC-ccccccccccceEEEecCCCcccccchhHHHHHHHHHhHHHHhCCcEEEecCCeEEEEeCCCcccceEEE
Confidence 999999999 689999999999999999999999999999999999999999999999999999999999853 799
Q ss_pred cCHHHHHHHHHHhhcccceEeecCCCCccChHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHhcccCCCCChHHHHHH
Q psy13357 581 RDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQF 660 (833)
Q Consensus 581 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 660 (833)
|||+|+++|+.+
T Consensus 180 y~e~E~~~~~~~-------------------------------------------------------------------- 191 (268)
T 3k9f_C 180 WTDGELEELRKQ-------------------------------------------------------------------- 191 (268)
T ss_dssp CSHHHHHHHHHH--------------------------------------------------------------------
T ss_pred eCHHHHHHHHHh--------------------------------------------------------------------
Confidence 999999999741
Q ss_pred HHHHHHHhccCCeEEEEEeecccceEEEEEEEeeCceeeEEecccccCCHHHHHHHHHHHHHHhhhcCCeEEEccccccc
Q psy13357 661 AKKIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVIIQKSIGEKI 740 (833)
Q Consensus 661 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (833)
+
T Consensus 192 -------~------------------------------------------------------------------------ 192 (268)
T 3k9f_C 192 -------F------------------------------------------------------------------------ 192 (268)
T ss_dssp -------S------------------------------------------------------------------------
T ss_pred -------c------------------------------------------------------------------------
Confidence 0
Q ss_pred ceeeecCHHHHHHHHHHhccCCccceeeccCCCCCccchhhhccCcCceeEEeeeeccHHHHHHHHHHhcCCCchHHHHH
Q psy13357 741 KKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKF 820 (833)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~~~iqRyKGLGEMn~~qLweTtm~P~~R~l~~v~i~da~~a~~~f~~LMG~~v~~Rr~f 820 (833)
.++++||||||||||||+|||||||||++|+|+||+++|+.+|+++|++|||++|+|||+|
T Consensus 193 -------------------~~~~~IqryKGLGEm~~~qlweTtmdP~~R~L~~Vti~da~~a~~~f~~LMG~~v~~Rk~f 253 (268)
T 3k9f_C 193 -------------------GKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKW 253 (268)
T ss_dssp -------------------CTTCEEEECCCGGGSCHHHHHHHHTCTTTCCEEEEECSCSHHHHHHHHHHHSSCCHHHHHH
T ss_pred -------------------CCCCCceEecCCCccCHHHHHHHhcCccceeEEEEEcCcHHHHHHHHHHHcCCCcHHHHHH
Confidence 1247899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccccCCC
Q psy13357 821 IELNALHAKNIDI 833 (833)
Q Consensus 821 I~~~a~~~~~ldi 833 (833)
|++||.++.|.|+
T Consensus 254 I~~~a~~~~~~~~ 266 (268)
T 3k9f_C 254 IEDNVKFTLEEAT 266 (268)
T ss_dssp HHHHCCCC-----
T ss_pred HHHHhHHhhcccc
Confidence 9999999888774
No 8
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=100.00 E-value=5e-100 Score=854.50 Aligned_cols=365 Identities=22% Similarity=0.318 Sum_probs=309.6
Q ss_pred CCCCccCceeccchhhhhhCCCeeeecCCCc----------------------CchhHHHHHHHHHHHhhhc-CCCCCeE
Q psy13357 17 SSYSASSIQILEGLEAVRKRPEMYIGDTSDG----------------------TGLHHLVFEILDNAIDESL-AGYCTKI 73 (833)
Q Consensus 17 ~~Y~~~~I~vLeglE~VRkRPgMYIGst~~~----------------------~GL~hlv~EIVdNsiDE~~-aG~~~~I 73 (833)
+..-+++||+|+||||||||||||||||++. +||||+||||||||+||++ +|+|+.|
T Consensus 10 ~~~~e~~~~~L~glE~VrkRPgMYIGst~~~~~~~~v~e~~~~~~~~~~v~~~~GL~~lv~EivdNaiDe~~~~g~~~~I 89 (418)
T 1pvg_A 10 PVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKRI 89 (418)
T ss_dssp --CHHHHSEECCHHHHHHHCCHHHHCCSSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred ccchhhheeecchhHHHhhCCCceEcccCCCcceeeeeeccccccccccccccchHHHHHHHHHhCHHHHHHhcCCCCEE
Confidence 3466779999999999999999999999972 7999999999999999995 7999999
Q ss_pred EEEEecC-CeEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccceeEEE
Q psy13357 74 NVTIYSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTI 152 (833)
Q Consensus 74 ~V~I~~D-gsIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~~Vev 152 (833)
.|+|++| |+|+|+|||||||+++||+ +|+|+||+|||+||||||||+++|++||||||||+|||||||+||+|+|
T Consensus 90 ~V~i~~d~~sI~V~DnGrGIPv~~h~~----~g~~~~E~v~t~LhaGgKfd~~~ykvSGGLhGVG~SvVNALS~~l~V~v 165 (418)
T 1pvg_A 90 DVNIHAEEHTIEVKNDGKGIPIEIHNK----ENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILET 165 (418)
T ss_dssp EEEEETTTTEEEEEEESSCCCCSBCTT----TCSBHHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHHHHTEEEEEEEE
T ss_pred EEEEECCCCEEEEEECCCcccCccccc----CCcccceEEEEEEecccccCCCceeccCCccceeeeeeeeccceEEEEE
Confidence 9999998 5999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred E--eCCeEEEEEEEcccccccccccccccccCCceEecc-CCCCccEEEEEeCccccccccccHHH---HHHHHHHhhcc
Q psy13357 153 N--RNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGD-TNKQGTKIHFWVDEKIFSNIEFHYEI---LKKRIRELSFL 226 (833)
Q Consensus 153 ~--r~Gk~y~q~f~~G~~~~~~~~~~~~~~~~~l~~~g~-~~~~GT~V~F~PD~~iF~~~~~~~~~---l~~RlrelA~L 226 (833)
+ |+|+.|+|+|++||. .+..| .+.+. +.++||+|+||||++||++..|++++ |.+|||++|||
T Consensus 166 ~r~rdGk~y~q~f~~G~~----------~~~~p-~i~~~~~~~tGT~V~F~PD~~iF~~~~f~~d~l~~l~~RlrelA~L 234 (418)
T 1pvg_A 166 ADLNVGQKYVQKWENNMS----------ICHPP-KITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDINGS 234 (418)
T ss_dssp EETTTTEEEEEEEETTTT----------EECCC-EEEECCSSCCEEEEEEEECGGGGTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCcEEEEEEEcCCC----------ccCCC-eecccCCCCCceEEEEEEChHHcCCcccCHHHHHHHHHHHHHHHhc
Confidence 9 599999999999831 35555 33222 25799999999999999988999998 68999999999
Q ss_pred CCCcEEEEeecccceEEEEEeCCCcchhhh----hhhcCCC---------ccCCceEEEeeccccccCCceEEEEeeeec
Q psy13357 227 NNGVCITLIDERIKKKEIFEFKGGTSGFVS----YINKSKL---------VVHPTIFQAIGNKISEKKNNINIDVSMQWN 293 (833)
Q Consensus 227 npGl~I~l~der~~~~~~f~~~~Gl~~fv~----~l~~~k~---------~l~~~~i~~~~e~~~~~~~~i~veval~~~ 293 (833)
||||+|+|+|+|.+. +|+.+|++ +++.++. ++|+.|+++.++. + .||||+||+
T Consensus 235 n~Gl~I~l~der~~~-------~g~~~~v~~y~~~l~~~k~~~~~~~~~~~~~~~~i~~~~~~-----~--~vevA~~~~ 300 (418)
T 1pvg_A 235 VRDINVYLNGKSLKI-------RNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERIN-----N--RWEVAFAVS 300 (418)
T ss_dssp STTCEEEETTEECCC-------CSHHHHHHTTTTTC-----------------CCSCEEEEEE-----T--TEEEEEEEC
T ss_pred CCCCEEEEecccccc-------ccHHHHHHHHHHhhhcccccccccccccCCCCCCEEEEEec-----c--eEEEEEEEc
Confidence 999999999998542 36666664 4566665 5777888887754 2 489999999
Q ss_pred CCCcceeEEeecceeccCCcchHHHHHHHHHHHHHHHHHHcccccccCCCCCHHHHhhcceeEEEEeecCCCCCcccccc
Q psy13357 294 NSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNK 373 (833)
Q Consensus 294 d~~~e~i~SFVN~I~T~~GGTHv~gf~~altr~in~y~~~~~l~Kk~k~~l~~~DIregL~avIsvki~nP~FegQTK~k 373 (833)
+++ ++++||||||+|++||||++||++||++++++|+++ +.+.+++++||||||+|||||++|||||+||||+|
T Consensus 301 ~~~-~~~~SFvN~I~T~~GGTH~~g~~~al~~~i~~~~~k-----~~~~~l~g~Dvregl~aviSvkv~~PqFegQTK~k 374 (418)
T 1pvg_A 301 DIS-FQQISFVNSIATTMGGTHVNYITDQIVKKISEILKK-----KKKKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQ 374 (418)
T ss_dssp SSS-CEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHCC----------CCHHHHHTTEEEEEEECCSSCCBSSTTCCS
T ss_pred CCC-ceEEEEeCceeCCCCCcHHHHHHHHHHHHHHHHHHh-----cccCCCCHHHHhhCeEEEEEEecCCCcccCccchh
Confidence 986 679999999999999999999999999999998753 33468999999999999999999999999999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHH
Q psy13357 374 LVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARK 421 (833)
Q Consensus 374 L~n~ev~~~v~~~v~~~l~~~l~~np~~ak~Ii~ki~~~a~ar~aa~k 421 (833)
|+|++.+..+.+++.++|..||++ +.|+++++++|+||+||+.
T Consensus 375 L~~~~~~~v~~~~v~e~l~~~l~~-----~~iv~ki~~~a~ar~aa~l 417 (418)
T 1pvg_A 375 LTTRVKDFGSRCEIPLEYINKIMK-----TDLATRMFEIADANEENAL 417 (418)
T ss_dssp BCCCGGGSSSCCCCCHHHHHHHTT-----SHHHHHHHHHHHC------
T ss_pred hcCcccccccccchhHHHHHHHhh-----hHHHHHHHHHHHHHHHhhc
Confidence 999776544447999999999985 6899999999999998753
No 9
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=100.00 E-value=2.2e-96 Score=821.57 Aligned_cols=361 Identities=21% Similarity=0.266 Sum_probs=308.6
Q ss_pred ccCceeccchhhhhhCCCeeeecCCC---------------------cCchhHHHHHHHHHHHhhhc-CCCCCeEEEEEe
Q psy13357 21 ASSIQILEGLEAVRKRPEMYIGDTSD---------------------GTGLHHLVFEILDNAIDESL-AGYCTKINVTIY 78 (833)
Q Consensus 21 ~~~I~vLeglE~VRkRPgMYIGst~~---------------------~~GL~hlv~EIVdNsiDE~~-aG~~~~I~V~I~ 78 (833)
++.|++|+||||||||||||||||++ .+||||+|||||||||||++ +|+|+.|.|+|+
T Consensus 3 ~~~~~~L~glE~VrkRPgmYiGst~~~~~~~~v~~~~~~~~~~~~~~~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~ 82 (400)
T 1zxm_A 3 ERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTID 82 (400)
T ss_dssp HHHSEECCHHHHHHHCCHHHHCCCSCEEEEEEEEETTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE
T ss_pred hHhheecchHHHHHhCCCcEEccCCccccceeeeccccccccccccccchHHHHHHHHHhhHHhHHhhcCCCceEEEEEE
Confidence 35799999999999999999999994 37999999999999999995 899999999999
Q ss_pred cC-CeEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccceeEEEEe--C
Q psy13357 79 SD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINR--N 155 (833)
Q Consensus 79 ~D-gsIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~~Vev~r--~ 155 (833)
.| |+|+|+|||||||+++||+ +|+|++|+|||+|||||||+++.|++||||||||+|+|||||+||+|+++| +
T Consensus 83 ~~~~~I~V~DnGrGIPv~~h~~----~~~~~~e~v~t~lhagsKf~~~~ykvSgGlhGvGlsvVnAlS~~l~v~v~~~~~ 158 (400)
T 1zxm_A 83 PENNLISIWNNGKGIPVVEHKV----EKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREY 158 (400)
T ss_dssp TTTTEEEEEEESSCCCCSEETT----TTEEHHHHHHHSSSEESCCCGGGCCCCSCCSSCHHHHHHHTEEEEEEEEEETTT
T ss_pred CCCCEEEEEECCCcccCccccc----cCccchhheeeeecccCCCCCCcccccCCccccceeeeEEeccceEEEEecCCC
Confidence 96 8999999999999999998 999999999999999999999999999999999999999999999999998 5
Q ss_pred CeEEEEEEEcccccccccccccccccCCceEeccC-CCCccEEEEEeCccccccccccHHH---HHHHHHHhhccCCCcE
Q psy13357 156 KKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDT-NKQGTKIHFWVDEKIFSNIEFHYEI---LKKRIRELSFLNNGVC 231 (833)
Q Consensus 156 Gk~y~q~f~~G~~~~~~~~~~~~~~~~~l~~~g~~-~~~GT~V~F~PD~~iF~~~~~~~~~---l~~RlrelA~LnpGl~ 231 (833)
|+.|+|+|++| .+..++..++.+ .++||+|+|+||+++|.++.|++++ |.+|++++|||||||+
T Consensus 159 g~~~~~~~~~G------------~~~~~~~~ig~~~~~~GT~V~F~Pd~~iF~~~ef~~~~~~~l~~rlrelA~lnpgv~ 226 (400)
T 1zxm_A 159 KKMFKQTWMDN------------MGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVK 226 (400)
T ss_dssp TEEEEEEEETT------------TTEECCCEEEECCSCCEEEEEEEECGGGGTCSSCCHHHHHHHHHHHHHHHHHSSSCE
T ss_pred CcEEEEEEccC------------ccccCcceeccCCCCCccEEEEEEChHHhCceeecHHHHHHHHHHHHHHHhhCCCcE
Confidence 89999999999 444444555655 4689999999999999888999999 8899999999999999
Q ss_pred EEEeecccceEEEEEeCCCcchhhhhhhcCCCccCCceEEEeeccccccCCceEEEEeeeecC-CCcceeEEeecceecc
Q psy13357 232 ITLIDERIKKKEIFEFKGGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNN-SYNENILCFTNNILQV 310 (833)
Q Consensus 232 I~l~der~~~~~~f~~~~Gl~~fv~~l~~~k~~l~~~~i~~~~e~~~~~~~~i~veval~~~d-~~~e~i~SFVN~I~T~ 310 (833)
|+|+|+|.+ ++||.+||++++.++.++++.++.+..+. +++.||+|+||++ +|+ ++||||||+|+
T Consensus 227 i~l~der~~-------~~Gi~~yv~~l~~~~~~~~~~~~~~~~~~-----~~~~~eva~~~~~~~~~--~~sfvN~I~T~ 292 (400)
T 1zxm_A 227 VFLNGNKLP-------VKGFRSYVDMYLKDKLDETGNSLKVIHEQ-----VNHRWEVCLTMSEKGFQ--QISFVNSIATS 292 (400)
T ss_dssp EEETTEECC-------CCSHHHHHHHHHTTCBCSSSSBCCCEEEE-----EETTEEEEEEECSSSCE--EEEEETTEECT
T ss_pred EEEecCCCC-------CCCHHHHHHHHhcCCCccCCCCcceEEee-----cCcEEEEEEEEcCCCce--EEEEeCCccCC
Confidence 999999853 48999999999988877776543333333 4577999999995 774 79999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHcccccccCCCCCHHHHhhcceeEEEEeecCCCCCccccccccccccchhhHH-HHHH
Q psy13357 311 DGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEE-IIIK 389 (833)
Q Consensus 311 ~GGTHv~gf~~altr~in~y~~~~~l~Kk~k~~l~~~DIregL~avIsvki~nP~FegQTK~kL~n~ev~~~v~~-~v~~ 389 (833)
+||||++||++||+|+||+|+++. ++.+.+++++||||||+|||||++|||||+||||+||+|+++ .+++. ++.+
T Consensus 293 ~GGTH~~gfr~altr~i~~y~~k~---~k~~~~l~~~Dvregl~avisvkv~~PqFegQTK~kL~~~~~-~~v~~~~~~~ 368 (400)
T 1zxm_A 293 KGGRHVDYVADQIVTKLVDVVKKK---NKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPK-SFGSTCQLSE 368 (400)
T ss_dssp TEEHHHHHHHHHHHHHHHHHHTTC---C----CCCHHHHHTTEEEEEEECCSSCCBSSTTCCEECCCGG-GSSSCCCCCH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHh---cccCCCcCHHHHhhCeEEEEEEecCCCCcCcccchhhcCccc-ccccccchhH
Confidence 999999999999999999999864 333468999999999999999999999999999999999987 77877 9999
Q ss_pred HHHHHHHhCchhhHHHHHHHHHHHHHH
Q psy13357 390 TLFDFLQENPGESKLICEKIIEAARSR 416 (833)
Q Consensus 390 ~l~~~l~~np~~ak~Ii~ki~~~a~ar 416 (833)
.|..|| .||..++.|+++++.+++++
T Consensus 369 ~~~~~l-~~~~~~~~i~~~a~~~~~~~ 394 (400)
T 1zxm_A 369 KFIKAA-IGCGIVESILNWVKFKAQVQ 394 (400)
T ss_dssp HHHHHH-TTC-----------------
T ss_pred HHHHHH-cChHHHHHHHHHHHHHHHHH
Confidence 999999 88988888888887766544
No 10
>3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A*
Probab=100.00 E-value=3.8e-95 Score=743.98 Aligned_cols=231 Identities=48% Similarity=0.847 Sum_probs=175.4
Q ss_pred ccCCCCCCceEEEEeecCCCccccccccCCcceeecccCcccccccccchhHhhccHhHHHHHHHhCCCCCCCCCCcCCC
Q psy13357 443 DCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKL 522 (833)
Q Consensus 443 dc~~kd~~~~eLflvEGDSAgGsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li~alG~g~~~~~~~~~~L 522 (833)
|-.++||++|||||||||||||||||||||+||||||||||||||++++.++|++|+||++||+|||||+| ++||+++|
T Consensus 11 ~~~~~d~~~~eLflvEGDSAgGsak~gRdr~~QailPLRGKiLNv~ka~~~ki~~N~Ei~~ii~alG~~~g-~~~d~~~L 89 (242)
T 3m4i_A 11 DDDKTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIH-DEFDIGKL 89 (242)
T ss_dssp ----CCGGGEEEEEEESSSCC---------CEEEEEEECC--------CHHHHTTCHHHHHHHHHHCSCSG-GGCCGGGC
T ss_pred CccccChhheEEEEEecccccchhhhccccccccccccCCcchhhhhcCHHHHhhCHHHHHHHHHhCCCcC-cccccccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999 68999999
Q ss_pred CCCceeeccCCCCCchhHHHHHHHHHHHhcHhhhhcCcEEEEcCcEEEEEeCC-cceeecCHHHHHHHHHHhhcccceEe
Q psy13357 523 RYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGN-NECYLRDDIEEERYMLKIAFKNVKLI 601 (833)
Q Consensus 523 RY~kIiImTDADvDGsHI~~Llltff~r~~p~Li~~G~vyia~pPLykv~~gk-~~~y~~~~~e~~~~~~~~~~~~~~~~ 601 (833)
|||||||||||||||+|||||||||||||||+||++||||+|+||||||++|| ++.||||++|+++|+.+.+
T Consensus 90 RY~kIiIMTDADvDGsHI~~LLltff~r~~p~Li~~G~vyia~pPL~kv~~gk~~~~y~ys~~E~~~~~~~~~------- 162 (242)
T 3m4i_A 90 RYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGL------- 162 (242)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHHHHHCTHHHHTTCEEEECCCSEEECCTTSCCEEESSHHHHHHHHHHHH-------
T ss_pred ccceEEEecCCCcccccchhHHHHHHHHHhHHHHhcCcEEEecCceEEEEeCCccEEEeCCHHHHHHHHHHhh-------
Confidence 99999999999999999999999999999999999999999999999999999 8999999999999975200
Q ss_pred ecCCCCccChHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHhcccCCCCChHHHHHHHHHHHHHhccCCeEEEEEeec
Q psy13357 602 SIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSNIEIIVEFDQ 681 (833)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 681 (833)
..
T Consensus 163 ----------------------------------------------------------------~~-------------- 164 (242)
T 3m4i_A 163 ----------------------------------------------------------------KA-------------- 164 (242)
T ss_dssp ----------------------------------------------------------------HH--------------
T ss_pred ----------------------------------------------------------------hc--------------
Confidence 00
Q ss_pred ccceEEEEEEEeeCceeeEEecccccCCHHHHHHHHHHHHHHhhhcCCeEEEcccccccceeeecCHHHHHHHHHHhccC
Q psy13357 682 LNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAEN 761 (833)
Q Consensus 682 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (833)
+ . + -++
T Consensus 165 -----------------------------------------------------~--~--~-----------------~~k 170 (242)
T 3m4i_A 165 -----------------------------------------------------G--K--K-----------------INK 170 (242)
T ss_dssp -----------------------------------------------------T--C--C-----------------CCT
T ss_pred -----------------------------------------------------C--C--c-----------------ccc
Confidence 0 0 0 012
Q ss_pred CccceeeccCCCCCccchhhhccCcCceeEEeeeeccHHHHHHHHHHhcCCCchHHHHHHHHhhhccccCCC
Q psy13357 762 MVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 833 (833)
Q Consensus 762 ~~~iqRyKGLGEMn~~qLweTtm~P~~R~l~~v~i~da~~a~~~f~~LMG~~v~~Rr~fI~~~a~~~~~ldi 833 (833)
..+||||||||||||+|||||||||++|+|+||+++|+..|+.+|++|||++|+|||+||++||.+|.+|||
T Consensus 171 ~~~IqryKGLGEm~~~ql~ettmdp~~R~L~~V~i~d~~~a~~~f~~LMG~~v~~Rk~~I~~~~~~~~~ld~ 242 (242)
T 3m4i_A 171 EDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVDARRSFITRNAKDVRFLDV 242 (242)
T ss_dssp TTSEEECSCGGGSCHHHHHHHHTCTTTCCEEECCHHHHHHHHHHHHHHHHC---------------------
T ss_pred ccccceEcCcCCCCHHHHHHHhcCccceeeEEeccCcHHHHHHHHHHHhCCCcHHHHHHHHHHhhhhhhccC
Confidence 248999999999999999999999999999999999999999999999999999999999999999999996
No 11
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=100.00 E-value=3.1e-90 Score=766.15 Aligned_cols=343 Identities=23% Similarity=0.404 Sum_probs=317.7
Q ss_pred ccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCCeEEEEECCCCcccccccCCCCCCCC
Q psy13357 27 LEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKR 106 (833)
Q Consensus 27 LeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~DgsIsV~DnGrGIPv~~h~~~~~~~~~ 106 (833)
++.|||||||||||||||+. +||||+|||||||||||+++|+|+.|.|+|+.||+|+|+|||||||+
T Consensus 9 ~~~lE~vrkRPgmYiGs~~~-~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~~g~I~V~DnGrGIp~------------ 75 (369)
T 3cwv_A 9 GGIVENVRKRPGMYCGDVGE-YGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDGSIALFCTSRTVTA------------ 75 (369)
T ss_dssp CCHHHHHHHSTHHHHSCSSH-HHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEEEESSCCH------------
T ss_pred ccHhHHHHhCCceEEcCCCC-chHHHHHHHHHhhhHhHHhhCCCCEEEEEEeCCCEEEEEECCCCcCH------------
Confidence 44599999999999999998 89999999999999999999999999999999999999999999998
Q ss_pred cceeeeeeeccccCCCCC----CcceecCCcccccchhhhhcccceeEEEEeCCeEEEEEEEcccccccccccccccc--
Q psy13357 107 SAAEIVMTELHAGGKFNK----NSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGIS-- 180 (833)
Q Consensus 107 ~~~E~Vft~LhAGgKFdd----~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~Gk~y~q~f~~G~~~~~~~~~~~~~~-- 180 (833)
|++| +|||||||++ +.|++|| |+|+|||||+||+|+++|+|+.|+|+|++| .+
T Consensus 76 ---e~v~-~lhagsKf~~~~~~~~y~vsG-----Gls~vnalSs~l~v~t~r~g~~~~~~~~~G------------~~~~ 134 (369)
T 3cwv_A 76 ---ENLV-RVATGAGFLGRPPGDGWGWDS-----MLVVSLALSSRYQVDIWADGRQWRVMGEHG------------HPQG 134 (369)
T ss_dssp ---HHHH-HHHTTTTGGGSSCCCSTTTTS-----SHHHHHHTEEEEEEEEEETTEEEEEEEETT------------EECT
T ss_pred ---hHee-eeecCCCcCCCcccccccccC-----HHHHHHHhhceEEEEEEECCCEEEEEEeCC------------cccc
Confidence 2588 9999999998 8899995 799999999999999999999999999999 55
Q ss_pred ----cCCceEeccCCCCccEEEEEeCccccccccccHHHHHHHHHHhhccCCCcEEEEeecccceEEEEEeCCCcchhhh
Q psy13357 181 ----VSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFVS 256 (833)
Q Consensus 181 ----~~~l~~~g~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~RlrelA~LnpGl~I~l~der~~~~~~f~~~~Gl~~fv~ 256 (833)
++|++.++.+.++||+|+|+||+++|.+..++++.|.+|++++|++||||+|+|+|++.++++.|+|++|+.+|+.
T Consensus 135 ~~~~~~~l~~~g~~~~~GT~V~f~Pd~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~~~~~f~~~gGl~~~v~ 214 (369)
T 3cwv_A 135 EGAAVTPMEPMPVSAERGVRVHFVPDATIFEVLAFDRARLSRRCNELAALAPGLRVSFADLQRGERTLWHLPGGVAQWAH 214 (369)
T ss_dssp TCEEESSCCCCSSCCSEEEEEEEEECTTTCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEETTTTEEEEEECTTHHHHHHH
T ss_pred cccccCCceEecccCCCCCEEEEEECHHHhCCccccHHHHHHHHHHHcCcCCCcEEEEEeCCCCeeEEEEeCchHHHHHH
Confidence 6666666766789999999999999988899999999999999999999999999999776789999999999999
Q ss_pred hhhcCCCccCCceEEEeeccccccCCceEEEEeeeecCCCcceeEEeecceeccCCcchHHHHHHHHHHHHHHHHHHccc
Q psy13357 257 YINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEF 336 (833)
Q Consensus 257 ~l~~~k~~l~~~~i~~~~e~~~~~~~~i~veval~~~d~~~e~i~SFVN~I~T~~GGTHv~gf~~altr~in~y~~~~~l 336 (833)
+++..+.++++++++++++. +++.|++|++|+++|++.++||||+|+|++||||+.||++||++++++|+
T Consensus 215 ~l~~~~~~~~~~~i~~~~~~-----~~i~ve~a~~~~~~~~~~~~sFVN~i~t~~GGTH~~g~~~al~~a~~~~~----- 284 (369)
T 3cwv_A 215 VLTEARPQLHPEPVVFDFTW-----DGLRVQCALQWCEDEDSTLLSFANAVRTVRHGAHVKGVTQALRGALAKLS----- 284 (369)
T ss_dssp HHHTTSCBSSSSCEEEEEEE-----TTEEEEEEEEEBSSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHH-----
T ss_pred HHhcCCcccCCCcEEEEEec-----CCEEEEEEEEecCCCCeeEEEEECCEEeCCCCCHHHHHHHHHHHHHHHHH-----
Confidence 99988788888899998877 78999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCHHHHhhcceeEEEEeecCCC--CCccccccccccccchhhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Q psy13357 337 LKKSKIEIIGEDIREGLTCVLSIKIPDPK--FNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAAR 414 (833)
Q Consensus 337 ~Kk~k~~l~~~DIregL~avIsvki~nP~--FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~ak~Ii~ki~~~a~ 414 (833)
|+++.+++++|||+||+|||||+++||| |+||||+||+|++++++|+++|++.|..||++||+.|+.|++|++.+|-
T Consensus 285 -k~~~~~l~~~dvregl~avisvk~~~P~~~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~~~~ 363 (369)
T 3cwv_A 285 -GETRGAFPWARVAQGLTAIVAVSGPRRQMAFAGPTKELLAIPGLEEAIRKQLQPLFIELLREHPVTPALLARRTSGSEG 363 (369)
T ss_dssp -TCCGGGSCHHHHTTTEEEEEEEECCGGGCCBSSTTCCSBCCTTHHHHHHHHHHHHHHHHHHTCTTHHHHHTTC------
T ss_pred -hhcCCCcCHHHHhhccEEEEEeccCCcchhccccccchhcCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHhcc
Confidence 2335679999999999999999999999 9999999999999999999999999999999999999999999998763
No 12
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=100.00 E-value=1.4e-88 Score=795.37 Aligned_cols=258 Identities=38% Similarity=0.618 Sum_probs=223.3
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhcccccccccccccccccCCCCCCceEEEEeecCCCccccccccCCcceeecccCcccc
Q psy13357 406 CEKIIEAARSREAARKTRELTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVL 485 (833)
Q Consensus 406 i~ki~~~a~ar~aa~kar~~~r~k~~~~~~~lpgKL~dc~~kd~~~~eLflvEGDSAgGsak~gRdr~~qailPLrGKiL 485 (833)
+++++.+|+||++|+++ .+||++++..+|||||+||+++||++|||||||||||||||||||||+||||||||||||
T Consensus 1 ~~k~~~~~~ar~~~~~~---~~rk~~~~~~~lpgKL~dc~~~~~~~~eL~lvEGDSAgGsak~gRdr~~qailPLRGKiL 77 (767)
T 2xkj_E 1 MEMAISKAGRRLKAAKK---VERKKIVSGPALPGKLADCVGQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKIL 77 (767)
T ss_dssp ---------------------CCCCCSSSCSSTTTCBCCCC-CGGGCEEEEEEHHHHHHHHHHHSCTTTEEEEEESSCCC
T ss_pred ChHHHHHHHHHHHHHHH---hhhccccccccCcHhhHhcccCCCcceEEEEeeCCCCcchhhhcCCcccccccccccchh
Confidence 36788999999865544 246888899999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhHhhccHhHHHHHHHhCCCCCCCCCCcCCCCCCceeeccCCCCCchhHHHHHHHHHHHhcHhhhhcCcEEEEc
Q psy13357 486 NIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQ 565 (833)
Q Consensus 486 Nv~ka~~~ki~~N~Ei~~li~alG~g~~~~~~~~~~LRY~kIiImTDADvDGsHI~~Llltff~r~~p~Li~~G~vyia~ 565 (833)
|||+|+.++|++|+||++|++|||||+|. +|+++||||||||||||||||+|||||||||||||||+||++||||+|+
T Consensus 78 Nv~ka~~~ki~~n~Ei~~i~~alG~~~g~--~~~~~lRY~kiiImtDaDvDG~HI~~Llltff~r~~p~Li~~G~vy~a~ 155 (767)
T 2xkj_E 78 NTWEVSSDEVLASQEVHDIAIAIGVDPGS--DDLSELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAM 155 (767)
T ss_dssp CCTTSCTTTGGGSHHHHHHHHHHTCCTTC--CCCTTCCCSEEEEECCSSHHHHHHHHHHHHHHHHHCHHHHHTTCEEEEC
T ss_pred hhhcCCHHHHhccHHHHHHHHHhCCCccc--ccccccccceEEEeecCCCCcchhhHHHHHHHHHHhHHHHhcCcEEEec
Confidence 99999999999999999999999999984 4999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeCCcceeecCHHHHHHHHHHhhcccceEeecCCCCccChHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHh
Q psy13357 566 PPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMS 645 (833)
Q Consensus 566 pPLykv~~gk~~~y~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (833)
||||||++||++.||||++|+++|+.+
T Consensus 156 pPl~kv~~gk~~~y~~~~~e~~~~~~~----------------------------------------------------- 182 (767)
T 2xkj_E 156 PPLFRIDIGKDVHYALDDEELETILKN----------------------------------------------------- 182 (767)
T ss_dssp CCSEEEEETTEEEEESSHHHHHHHHHT-----------------------------------------------------
T ss_pred CCEEEEEECCEEEeeeCHHHHHHHHHH-----------------------------------------------------
Confidence 999999999999999999999999752
Q ss_pred cccCCCCChHHHHHHHHHHHHHhccCCeEEEEEeecccceEEEEEEEeeCceeeEEecccccCCHHHHHHHHHHHHHHhh
Q psy13357 646 DVILNLDTRENAEQFAKKIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKI 725 (833)
Q Consensus 646 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (833)
+
T Consensus 183 ----------------------~--------------------------------------------------------- 183 (767)
T 2xkj_E 183 ----------------------V--------------------------------------------------------- 183 (767)
T ss_dssp ----------------------C---------------------------------------------------------
T ss_pred ----------------------h---------------------------------------------------------
Confidence 0
Q ss_pred hcCCeEEEcccccccceeeecCHHHHHHHHHHhccCCccceeeccCCCCCccchhhhccCcCceeEEeeeeccHHHHHHH
Q psy13357 726 IGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKI 805 (833)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iqRyKGLGEMn~~qLweTtm~P~~R~l~~v~i~da~~a~~~ 805 (833)
. ++++++||||||||||||+|||||||||++|+|+||+++|+..|+++
T Consensus 184 ------------~--------------------~~~~~~IqRYKGLGEmnp~ql~ETtmdp~~R~L~~v~i~da~~ad~~ 231 (767)
T 2xkj_E 184 ------------K--------------------GNKNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDAHLTAGL 231 (767)
T ss_dssp ------------C--------------------SSCCCEEEECCCGGGSCHHHHHHHHTCTTTCCEEEEECCSHHHHHHH
T ss_pred ------------h--------------------cCCCCceecccCCCCCCHHHHhHhhcCccceEEEEEEcccHHHHHHH
Confidence 0 12358899999999999999999999999999999999999999999
Q ss_pred HHHhcCC-CchHHHHHHHHhhhccccCCC
Q psy13357 806 FMTLMGD-NVELRRKFIELNALHAKNIDI 833 (833)
Q Consensus 806 f~~LMG~-~v~~Rr~fI~~~a~~~~~ldi 833 (833)
|++|||+ +|+|||+||++|+..+ ++|+
T Consensus 232 f~~lmgkk~ve~RKewI~~~~~~~-~~d~ 259 (767)
T 2xkj_E 232 LDKLLAKKRAADRKQWLEQKGNLA-DITV 259 (767)
T ss_dssp HHHHHCGGGHHHHHHHHHHHGGGC-C---
T ss_pred HHHHhCCCCchHHHHHHHhcCccc-cchh
Confidence 9999998 6999999999999643 6653
No 13
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=100.00 E-value=9.4e-76 Score=680.11 Aligned_cols=225 Identities=25% Similarity=0.409 Sum_probs=209.2
Q ss_pred cccccccccccC---CCCCCceEEEEeecCCCccccccccC---CcceeecccCcccccccccchhHhhccHhHHHHHHH
Q psy13357 434 DIELSTKLADCQ---EKNPELCELYIVEGDSAGGSVKQGRD---RRFQAVLPLRGKVLNIEKARFEKIILSEQITTLIST 507 (833)
Q Consensus 434 ~~~lpgKL~dc~---~kd~~~~eLflvEGDSAgGsak~gRd---r~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li~a 507 (833)
..++| ||+||+ ++||++|||||||||||||||||||+ |+||||||||||||||++++.++|++|+||++|++|
T Consensus 3 i~g~~-KL~Dc~~a~~k~~~~~el~lvEGDSAggsak~gr~~~gR~~qailPLrGKiLNv~ka~~~ki~~n~Ei~~i~~a 81 (757)
T 3l4j_A 3 ITNYP-KLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKI 81 (757)
T ss_dssp CCSCS-SCBCCTTSSSTTTTTCEEEEEEHHHHHHHHHHHHHHHCSTTEEEEEECSSCCCCTTCCHHHHHHCHHHHHHHHH
T ss_pred cCCCc-CccccccccCCCccceEEEEeecccchhhHhhcccccCcccccccccCCcccchhhccHHHhhcCHHHHHHHHH
Confidence 45788 999995 89999999999999999999999995 999999999999999999999999999999999999
Q ss_pred hCCCCCCCCCCcCCCCCCceeeccCCCCCchhHHHHHHHHHHHhcHhhhh-cCcEEEEcCcEEEEE---eCCcceeecCH
Q psy13357 508 LGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIE-YGYIYIAQPPLYKIK---YGNNECYLRDD 583 (833)
Q Consensus 508 lG~g~~~~~~~~~~LRY~kIiImTDADvDGsHI~~Llltff~r~~p~Li~-~G~vyia~pPLykv~---~gk~~~y~~~~ 583 (833)
||||+|+++||+++||||||||||||||||+|||||||||||||||+||+ +||||+|+||||||+ +||++.|||++
T Consensus 82 lG~~~g~~~~~~~~lRY~kiiImtDaD~DG~HI~~Llltff~r~~p~Li~~~G~vy~~~~Pl~kv~~~~~gk~~~~~ys~ 161 (757)
T 3l4j_A 82 MGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNM 161 (757)
T ss_dssp TTCCCSSCCCCGGGSSCSEEEEECCSSHHHHHHHHHHHHHHHHHSTTSTTSTTCEEEECCCSEEEEECSSSCCEEEESSH
T ss_pred hCCCcCcccccccccCcceEEEecCcccccccchhHHHHHHHHHhHHHhccCCEEEEecCceEEEeeccCCcceEEecCH
Confidence 99999976679999999999999999999999999999999999999999 899999999999999 89999999999
Q ss_pred HHHHHHHHHhhcccceEeecCCCCccChHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHhcccCCCCChHHHHHHHHH
Q psy13357 584 IEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKK 663 (833)
Q Consensus 584 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 663 (833)
+|+++|+.+
T Consensus 162 ~E~~~~~~~----------------------------------------------------------------------- 170 (757)
T 3l4j_A 162 PDYEKWREE----------------------------------------------------------------------- 170 (757)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred HHHHHHHHH-----------------------------------------------------------------------
Confidence 999999642
Q ss_pred HHHHhccCCeEEEEEeecccceEEEEEEEeeCceeeEEecccccCCHHHHHHHHHHHHHHhhhcCCeEEEccccccccee
Q psy13357 664 IIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVIIQKSIGEKIKKY 743 (833)
Q Consensus 664 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (833)
+ +
T Consensus 171 ----~------------------------------------------------------------------~-------- 172 (757)
T 3l4j_A 171 ----E------------------------------------------------------------------S-------- 172 (757)
T ss_dssp ----T------------------------------------------------------------------G--------
T ss_pred ----h------------------------------------------------------------------c--------
Confidence 0 0
Q ss_pred eecCHHHHHHHHHHhccCCccceeeccCCCCCccchhhh--ccCcCceeEEeeeeccHHHHHHHHHHhcCCCchHHHHHH
Q psy13357 744 TANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWET--TMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFI 821 (833)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~iqRyKGLGEMn~~qLweT--tm~P~~R~l~~v~i~da~~a~~~f~~LMG~~v~~Rr~fI 821 (833)
++++++||||||||||||+||||| ||||.+|+|++|+++|+..+|.+|+. ++|+|||+||
T Consensus 173 ---------------~~~~~~iqryKGLGem~~~ql~e~f~~m~~~~r~l~~~~~~d~~~~d~~f~~---~~~~~Rk~wi 234 (757)
T 3l4j_A 173 ---------------HKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYIDLAFSK---KKADDRKEWL 234 (757)
T ss_dssp ---------------GGSCEEEEECCTTTTSCHHHHHHHHHTCTTTEEEECCCCTTHHHHHHHHHCT---TCHHHHHHHH
T ss_pred ---------------cCCCCccceecCcCcCCHHHHHHHhcCcCceeEEEEecCccHHHHHHHHhCc---CcchHHHHHH
Confidence 123588999999999999999996 67899999999999999999988887 7999999999
Q ss_pred HHhhh
Q psy13357 822 ELNAL 826 (833)
Q Consensus 822 ~~~a~ 826 (833)
++|+-
T Consensus 235 ~~~~~ 239 (757)
T 3l4j_A 235 RQYEP 239 (757)
T ss_dssp HHCCT
T ss_pred HhcCC
Confidence 99984
No 14
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=100.00 E-value=7.2e-76 Score=681.62 Aligned_cols=223 Identities=29% Similarity=0.449 Sum_probs=163.9
Q ss_pred ccccccccccc---CCCCCCceEEEEeecCCCc-----cccccccCCcceeecccCcccccccccchhHhhccHhHHHHH
Q psy13357 434 DIELSTKLADC---QEKNPELCELYIVEGDSAG-----GSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQITTLI 505 (833)
Q Consensus 434 ~~~lpgKL~dc---~~kd~~~~eLflvEGDSAg-----Gsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li 505 (833)
..++| ||+|| +++||++|||||||||||| ||||||||| |||||||||||||++|+.++|++|+||++||
T Consensus 33 ~~~lp-KL~Dan~a~~kd~~~~eLflvEGDSAg~~a~sGsak~gRdr--~ailPLRGKiLNv~ka~~~ki~~N~Ei~~ii 109 (803)
T 3qx3_A 33 IKGIP-KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVREASHKQIMENAEINNII 109 (803)
T ss_dssp -CCCT-TCBCCTTTTSTTGGGCEEEEEEHHHHHHHHHTTSTTGGGTT--EEEEEECSSCCCCTTCCHHHHHHCHHHHHHH
T ss_pred cCCCC-ccccccccccCChhheEEEEecCCcchhhhhcccceecccc--cccccccCcchhhhhccHHHHhcCHHHHHHH
Confidence 46789 99999 7899999999999999999 999999998 8999999999999999999999999999999
Q ss_pred HHhCCCCCCC---CCCcCCCCCCceeeccCCCCCchhHHHHHHHHHHHhcHhhhhcCcEEEEcCcEEEEEeCCcceeecC
Q psy13357 506 STLGIGIEQD---EFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRD 582 (833)
Q Consensus 506 ~alG~g~~~~---~~~~~~LRY~kIiImTDADvDGsHI~~Llltff~r~~p~Li~~G~vyia~pPLykv~~gk~~~y~~~ 582 (833)
+|||||+|++ .||+++||||||||||||||||+|||||||||||||||+||+.||||+|+||||||++||++.|||+
T Consensus 110 ~alG~g~g~~~~~~~d~~~LRY~kIiIMTDADvDGsHI~~LLltff~r~~p~Li~~G~vyia~pPL~kv~~gk~~~~~ys 189 (803)
T 3qx3_A 110 KIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYS 189 (803)
T ss_dssp HHHTCCTTCCCCSTTGGGGCSCSEEEEECCSSHHHHHHHHHHHHHHHHHCGGGGGTTCEEEECC----------------
T ss_pred HHhCCCcCccccccccccccccceEEEecCCCcccccchhHHHHHHHHHhHHHHhcCeEEEecCceEEEecCCeeEEEec
Confidence 9999999953 2589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccceEeecCCCCccChHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHhcccCCCCChHHHHHHHH
Q psy13357 583 DIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAK 662 (833)
Q Consensus 583 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 662 (833)
++|+++|+.+
T Consensus 190 ~~e~~~~~~~---------------------------------------------------------------------- 199 (803)
T 3qx3_A 190 IPEFDEWKKH---------------------------------------------------------------------- 199 (803)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHH----------------------------------------------------------------------
Confidence 9999998641
Q ss_pred HHHHHhccCCeEEEEEeecccceEEEEEEEeeCceeeEEecccccCCHHHHHHHHHHHHHHhhhcCCeEEEcccccccce
Q psy13357 663 KIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVIIQKSIGEKIKK 742 (833)
Q Consensus 663 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (833)
+ .
T Consensus 200 -----~---------------------------------------------------------------------~---- 201 (803)
T 3qx3_A 200 -----I---------------------------------------------------------------------E---- 201 (803)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----h---------------------------------------------------------------------c----
Confidence 0 0
Q ss_pred eeecCHHHHHHHHHHhccCCccceeeccCCCCCccchhhhccCcC-ceeEEeee-eccHHHHHHHHHHhcCCCchHHHHH
Q psy13357 743 YTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPM-IRCLLKVK-IKDAISADKIFMTLMGDNVELRRKF 820 (833)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~iqRyKGLGEMn~~qLweTtm~P~-~R~l~~v~-i~da~~a~~~f~~LMG~~v~~Rr~f 820 (833)
+.++++||||||||||||+|||||||||+ +|++++|+ .+|++.++.+|+ |++|++||+|
T Consensus 202 ----------------~~~~~~iqryKGLGem~~~el~ettmd~~~~r~~~~~~~~~d~~~~d~~F~---k~~~~~RK~w 262 (803)
T 3qx3_A 202 ----------------NQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFS---KKKIDDRKEW 262 (803)
T ss_dssp ----------------------------------CHHHHHHHTHHHHEEEEECCSHHHHHHHHHHHC---GGGHHHHHHH
T ss_pred ----------------cCCCcccccccccCCCCHHHHHHHhcCcccceEEEEeCCcchHHHHHHHhc---CCChHHHHHH
Confidence 01347899999999999999999999986 78899998 466666666666 6789999999
Q ss_pred HHHhhh
Q psy13357 821 IELNAL 826 (833)
Q Consensus 821 I~~~a~ 826 (833)
|++|+.
T Consensus 263 i~~~~~ 268 (803)
T 3qx3_A 263 LTNFME 268 (803)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 999983
No 15
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=100.00 E-value=8.3e-75 Score=672.01 Aligned_cols=201 Identities=64% Similarity=1.043 Sum_probs=185.9
Q ss_pred ccccccccccccCCCCCCceEEEEeecCCCccccccccCCcceeecccCcccccccccchhHhhccHhHHHHHHHhCCCC
Q psy13357 433 DDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQITTLISTLGIGI 512 (833)
Q Consensus 433 ~~~~lpgKL~dc~~kd~~~~eLflvEGDSAgGsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li~alG~g~ 512 (833)
+..+|||||+||+++||++|||||||||||||||||||||+|||||||||||||||+|+.++|++|+||++|++|||||+
T Consensus 2 ~~~~lpgkl~dc~~~~~~~~eL~lvEGDSA~Gsak~gRd~~~qai~PLrGKiLNv~~a~~~~i~~n~Ei~~i~~alG~~~ 81 (692)
T 2xcs_B 2 DVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGI 81 (692)
T ss_dssp -------CCBCCSCCCTTTCEEEEESSHHHHHHHHHHSCTTTEEEEECCSSCCCTTTSCHHHHHTCHHHHHHHHHHCSCC
T ss_pred CCCCCCchhhcCCCCCcccceEEEecCCcccCcccccccccccccccccCcccchhhCcHHHhhccHHHHHHHHHhCCCc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCCCCCCceeeccCCCCCchhHHHHHHHHHHHhcHhhhhcCcEEEEcCcEEEEEeCCcceeecCHHHHHHHHHH
Q psy13357 513 EQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLK 592 (833)
Q Consensus 513 ~~~~~~~~~LRY~kIiImTDADvDGsHI~~Llltff~r~~p~Li~~G~vyia~pPLykv~~gk~~~y~~~~~e~~~~~~~ 592 (833)
| .+||+++||||||||||||||||+|||||||||||||||+||++||||+|+||+
T Consensus 82 g-~~~~~~~lrY~kiiImTDaD~DGsHI~~Llltff~r~~~~Li~~g~vyia~pP~------------------------ 136 (692)
T 2xcs_B 82 G-GDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPT------------------------ 136 (692)
T ss_dssp G-GGCCGGGCSCSEEEECCCSSHHHHHHHHHHHHHHHHHCHHHHHTTCEEECCCCS------------------------
T ss_pred C-ccccccccccceEEEeecCCCCcchhhhHHHHHHHHhChHHhhcCeeEEecCch------------------------
Confidence 9 579999999999999999999999999999999999999999999999999982
Q ss_pred hhcccceEeecCCCCccChHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHhcccCCCCChHHHHHHHHHHHHHhccCC
Q psy13357 593 IAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSN 672 (833)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 672 (833)
T Consensus 137 -------------------------------------------------------------------------------- 136 (692)
T 2xcs_B 137 -------------------------------------------------------------------------------- 136 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEeecccceEEEEEEEeeCceeeEEecccccCCHHHHHHHHHHHHHHhhhcCCeEEEcccccccceeeecCHHHHH
Q psy13357 673 IEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVIIQKSIGEKIKKYTANNFYKII 752 (833)
Q Consensus 673 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (833)
T Consensus 137 -------------------------------------------------------------------------------- 136 (692)
T 2xcs_B 137 -------------------------------------------------------------------------------- 136 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhccCCccceeeccCCCCCccchhhhccCcCceeEEeeeeccHHHHHHHHHHhcCCCchHHHHHHHHhhhccccCC
Q psy13357 753 NYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNID 832 (833)
Q Consensus 753 ~~~~~~~~~~~~iqRyKGLGEMn~~qLweTtm~P~~R~l~~v~i~da~~a~~~f~~LMG~~v~~Rr~fI~~~a~~~~~ld 832 (833)
||||||||||+|||||||||++|+|+||+++|+.+|+++|++|||++|+|||+||++|+.. .+||
T Consensus 137 --------------~yKGLGem~~~ql~et~m~p~~r~l~~v~~~d~~~~~~~~~~lmg~~~~~Rk~~i~~~~~~-~~ld 201 (692)
T 2xcs_B 137 --------------GYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVY-ANLD 201 (692)
T ss_dssp --------------SCSSGGGSCHHHHHHHHTCTTTCCCEEEECCCHHHHHHHHHHHHSSCHHHHHHHHHHHCCC-CC--
T ss_pred --------------hhcccccCCHHHHHHHhcCccceeEEEEecCchhhHHHHHHHHcCCCchHHHHHHHhcCCc-cccc
Confidence 2899999999999999999999999999999999999999999999999999999999965 3676
Q ss_pred C
Q psy13357 833 I 833 (833)
Q Consensus 833 i 833 (833)
+
T Consensus 202 ~ 202 (692)
T 2xcs_B 202 F 202 (692)
T ss_dssp -
T ss_pred c
Confidence 4
No 16
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=100.00 E-value=5.6e-69 Score=556.92 Aligned_cols=217 Identities=58% Similarity=0.982 Sum_probs=188.0
Q ss_pred CCCCccCceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCCeEEEEECCCCccccc
Q psy13357 17 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDI 96 (833)
Q Consensus 17 ~~Y~~~~I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~DgsIsV~DnGrGIPv~~ 96 (833)
++|++++||+|+||||||||||||||||+..+||||+|||||||||||+++|+|+.|.|+|+.||+|+|+|||||||+++
T Consensus 3 ~~y~~~~i~~l~~le~vr~rPgmYiG~~~~~~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~~g~i~V~DnGrGIp~~~ 82 (220)
T 4duh_A 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGI 82 (220)
T ss_dssp ------------CHHHHHHSTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHHSCCCEEEEEECTTSCEEEEECSSCCCCSE
T ss_pred CccChhHcEEechhHHHHhCCceEECCCCCcccHHHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCcEEEEECCcCccccc
Confidence 36999999999999999999999999999867999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccceeEEEEeCCeEEEEEEEcccccccccccc
Q psy13357 97 KIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTI 176 (833)
Q Consensus 97 h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~Gk~y~q~f~~G~~~~~~~~~~ 176 (833)
||+ +|+|++|+|||+|||||||+++.|++||||||||+|||||||+||+|+|+|+|+.|+|+|++|
T Consensus 83 ~~~----~~~~~~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~svvNAlS~~l~v~v~r~g~~~~~~f~~G---------- 148 (220)
T 4duh_A 83 HPE----EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHG---------- 148 (220)
T ss_dssp ETT----TTEEHHHHHHHSTTCSSCCCTTC--------CCCHHHHHHTEEEEEEEEEETTEEEEEEEETT----------
T ss_pred ccc----cCcchhhheeeecccCCCcCCCccccccCccceecchhcccccceEEEEEECCEEEEEEecCC----------
Confidence 998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCceEeccCCCCccEEEEEeCccccccc-cccHHHHHHHHHHhhccCCCcEEEEeecccceEEEEEeCC
Q psy13357 177 NGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNI-EFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKG 249 (833)
Q Consensus 177 ~~~~~~~l~~~g~~~~~GT~V~F~PD~~iF~~~-~~~~~~l~~RlrelA~LnpGl~I~l~der~~~~~~f~~~~ 249 (833)
.+++++.+++.+.++||+|+|+||+++|.+. .|+++.|.+||+++|||||||+|+|+|+|.+++++|+|++
T Consensus 149 --~~~~~l~~~g~~~~~GT~V~F~Pd~~~F~~~~~~~~~~l~~rlrelA~ln~gv~i~l~der~~~~~~~~y~g 220 (220)
T 4duh_A 149 --VPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEG 220 (220)
T ss_dssp --EESSSCEEEEECSCCEEEEEEEECTTTCCSSCSCCHHHHHHHHHHHHHHCTTSEEEEEETTTCCEEEEC---
T ss_pred --cCcCCceeccccCCCCcEEEEEECHHHhCCcccCCHHHHHHHHHHHHhcCCCCEEEEEccCCCcEEEEEcCC
Confidence 7888888888888999999999999999976 8999999999999999999999999999988788999975
No 17
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=100.00 E-value=1.4e-67 Score=547.84 Aligned_cols=216 Identities=44% Similarity=0.796 Sum_probs=186.3
Q ss_pred CCCCccCceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCCeEEEEECCCCccccc
Q psy13357 17 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDI 96 (833)
Q Consensus 17 ~~Y~~~~I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~DgsIsV~DnGrGIPv~~ 96 (833)
++|++++||+|+|+||||||||||||||+. +||||+|+||||||+||+++|+|+.|.|+|+.||+|+|+|||||||++.
T Consensus 9 ~~y~~~~i~~l~~le~vr~RPgmYiGs~~~-~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~~g~i~V~DnG~GIp~~~ 87 (226)
T 4emv_A 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDG-AGLHHLVWEIVDNAVDEALSGFGDRIDVTINKDGSLTVQDHGRGMPTGM 87 (226)
T ss_dssp --------CCCBCTHHHHHCHHHHHSCSSH-HHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCSB
T ss_pred hcCChhhcEEcchhHHHhhCCceEEcCCCc-ccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCeEEEEEcCCCccccc
Confidence 469999999999999999999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccceeEEEEeCCeEEEEEEEcccccccccccc
Q psy13357 97 KIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTI 176 (833)
Q Consensus 97 h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~Gk~y~q~f~~G~~~~~~~~~~ 176 (833)
| + +|+|++|+|||+|||||||+++.|++||||||||+|||||||+||+|+|+|+|+.|+|+|++||
T Consensus 88 h-~----~~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~svvNALS~~l~v~v~r~g~~~~q~f~~Gg--------- 153 (226)
T 4emv_A 88 H-A----MGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGG--------- 153 (226)
T ss_dssp C-G----GGCBHHHHHHHCBC--------------CGGGCCHHHHHHTEEEEEEEEEETTEEEEEEEETTT---------
T ss_pred c-c----cCceehheeEEeecccCccCccceEeccccccccchhhhhcccceEEEEEeCCcEEEEEECCCC---------
Confidence 9 6 8999999999999999999999999999999999999999999999999999999999999995
Q ss_pred cccccCCceEeccC--CCCccEEEEEeCccccccccccHHHHHHHHHHhhccCCCcEEEEeecccceEEEEEeCC
Q psy13357 177 NGISVSPIKIIGDT--NKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKG 249 (833)
Q Consensus 177 ~~~~~~~l~~~g~~--~~~GT~V~F~PD~~iF~~~~~~~~~l~~RlrelA~LnpGl~I~l~der~~~~~~f~~~~ 249 (833)
.+++++++++.+ .++||+|+|+||+++|.+..|+++.|.+||+++|||||||+|+|+|+|.+++++|+|++
T Consensus 154 --~~~~~l~~ig~~~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~rlrelA~ln~gv~i~l~der~~~~~~f~y~g 226 (226)
T 4emv_A 154 --KPVTTLKKIGTALKSKTGTKVTFMPDATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAIEFHYEN 226 (226)
T ss_dssp --EESSCSEEEEECCTTCCEEEEEEEECTTTCSCCCCCHHHHHHHHHHHHHHHCSCEEEEEETTTCCEEEECCCC
T ss_pred --EEcCCceEecccCCCCCCeEEEEEECHHHcCCCCcCHHHHHHHHHHHhhcCCCCEEEEEecCCCcEEEEEcCC
Confidence 677888878776 78999999999999999889999999999999999999999999999987778999985
No 18
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=100.00 E-value=7e-58 Score=467.21 Aligned_cols=193 Identities=51% Similarity=0.841 Sum_probs=182.7
Q ss_pred CCccCceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCCeEEEEECCCCccccccc
Q psy13357 19 YSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDIKI 98 (833)
Q Consensus 19 Y~~~~I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~DgsIsV~DnGrGIPv~~h~ 98 (833)
|++++||+|+||||||||||||||||+. +||||+|+||||||+||++||+|+.|.|+|+.||+|+|+|||||||++.|+
T Consensus 2 y~~~~i~~l~~le~vr~RPgmYiGs~~~-~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~~g~i~V~DnG~Gip~~~h~ 80 (198)
T 3ttz_A 2 YGAGQIQVLEGLEAVRKRPGMYIGSTSE-RGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDNGRGIPVDIQE 80 (198)
T ss_dssp CCHHHHHHHHHHHHHHHSHHHHHSCSSH-HHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEGGGEEEEEECSSCCCCSBCT
T ss_pred CChhHeEEecchHHHhcCCCcEECCCCC-cchHHHHHHHHHHHHhHHhcCCCcEEEEEEeCCCeEEEEECCCCccccccC
Confidence 9999999999999999999999999998 899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccceeEEEEeCCeEEEEEEEcccccccccccccc
Q psy13357 99 DDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTING 178 (833)
Q Consensus 99 ~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~Gk~y~q~f~~G~~~~~~~~~~~~ 178 (833)
+ .|++++|++|| +|||||||+||+|+++|+|+.|+|+|++|
T Consensus 81 ~----~~~~~~e~i~t-----------------------~SvVNALS~~l~v~v~r~g~~~~~~f~~G------------ 121 (198)
T 3ttz_A 81 K----MGRPAVEVILT-----------------------SSVVNALSQDLEVYVHRNETIYHQAYKKG------------ 121 (198)
T ss_dssp T----TSSBHHHHHHH-----------------------TCHHHHTEEEEEEEEEETTEEEEEEEETT------------
T ss_pred c----CCCccccccce-----------------------eEehhhhcCeEEEEEEECCcEEEEEEeCC------------
Confidence 8 89999999987 99999999999999999999999999999
Q ss_pred cccCCceEeccCCCCccEEEEEeCcccc-ccccccHHHHHHHHHHhhccCCCcEEEEeecccc---eEEEEEeCCCc
Q psy13357 179 ISVSPIKIIGDTNKQGTKIHFWVDEKIF-SNIEFHYEILKKRIRELSFLNNGVCITLIDERIK---KKEIFEFKGGT 251 (833)
Q Consensus 179 ~~~~~l~~~g~~~~~GT~V~F~PD~~iF-~~~~~~~~~l~~RlrelA~LnpGl~I~l~der~~---~~~~f~~~~Gl 251 (833)
.++.++.+++.+.++||+|+|+||+++| .+..|+++.|.+||+++|||||||+|+|+|+|.+ ++++|+|++||
T Consensus 122 ~~~~~l~~i~~~~~~GT~V~F~Pd~~iF~~~~~~~~~~l~~rlrelA~ln~gv~i~l~der~~~~~~~~~f~~~gGi 198 (198)
T 3ttz_A 122 VPQFDLKEVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGI 198 (198)
T ss_dssp EESSCCEEEEECSCCEEEEEEEECTTTCCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEECSSTTSCEEEEECCC---
T ss_pred EECCCceeccCCCCCCcEEEEEECHHHhccCCccCHHHHHHHHHHHhhcCCCCEEEEEeecCCCCcceEEEEcCCCC
Confidence 7888888888888999999999999999 7889999999999999999999999999999965 46899999996
No 19
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=100.00 E-value=2.4e-56 Score=457.23 Aligned_cols=199 Identities=37% Similarity=0.719 Sum_probs=168.3
Q ss_pred chhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCCeEEEEECCCCcccccccCCCCCCCCcc
Q psy13357 29 GLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSA 108 (833)
Q Consensus 29 glE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~DgsIsV~DnGrGIPv~~h~~~~~~~~~~~ 108 (833)
|||||||||||||||+++ +|+|+|+|+||+||+++|+|+.|.|+|+.||+|+|+|||+|||++.||+ +|+|+
T Consensus 1 gle~vr~rpgmyig~~~~----~~~v~Elv~NsiDa~~~g~a~~I~V~i~~~g~i~V~DnG~GIp~~~~~~----~~~~~ 72 (201)
T 3fv5_A 1 GLEPVRRRPGMYTDTTRP----NHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPE----EGVPA 72 (201)
T ss_dssp CCHHHHHCGGGTSCTTST----HHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCSBCTT----CSSBH
T ss_pred CchhhccCCccEECCCCh----hhhhHHHHHHHHHHHhcCCCcEEEEEEeCCCEEEEEECCCCcCcccccc----cCcch
Confidence 799999999999999864 9999999999999999999999999999999999999999999999998 89999
Q ss_pred eeeeeeeccccCCCCCCcceecCCcccccchhhhhcccceeEEEEeCCeEEEEEEEcccccccccccccccccCCceEec
Q psy13357 109 AEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIG 188 (833)
Q Consensus 109 ~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~Gk~y~q~f~~G~~~~~~~~~~~~~~~~~l~~~g 188 (833)
+|++|+++||||||+++.|++|+|+||+|++++||||++|+|+++++|+.|+|+|++| .++.++..++
T Consensus 73 ~e~i~~~~hatsK~~~~~~~~s~GfrGeglssinalS~~l~v~t~~~g~~~~~~~~~G------------~~~~~~~~~g 140 (201)
T 3fv5_A 73 VELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENG------------EKVQDLQVVG 140 (201)
T ss_dssp HHHHHHCC---------------------CHHHHHTEEEEEEEEEETTEEEEEEEETT------------EEEEEEEEEE
T ss_pred hheeeeeeccccCcCCCcccccCcccceecchhhcccceEEEEEEecCceEEEEEeCC------------EEcccceecc
Confidence 9999999999999999999999999999999999999999999999999999999999 6666776666
Q ss_pred cC--CCCccEEEEEeCccccccccccHHHHHHHHHHhhccCCCcEEEEeecccceEEEEEe
Q psy13357 189 DT--NKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEF 247 (833)
Q Consensus 189 ~~--~~~GT~V~F~PD~~iF~~~~~~~~~l~~RlrelA~LnpGl~I~l~der~~~~~~f~~ 247 (833)
.+ .++||+|+|+||+++|.+..++++.|.+|++++|++||||+|+|++++.++++.|+|
T Consensus 141 ~~~~~~~GT~V~f~Pdr~~F~~~~~e~~~i~~~l~~lA~l~pgv~~~l~~~r~~~~~~~~y 201 (201)
T 3fv5_A 141 TCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY 201 (201)
T ss_dssp ECCTTCCEEEEEEEECGGGSSCCCCCHHHHHHHHHHHHHHSTTCEEEEEETTTTEEEEECC
T ss_pred cCCCCCCCeEEEEEECHHHcCCCccCHHHHHHHHHHHHHhCCCCEEEEEecCCCcEEEEEC
Confidence 55 689999999999999988899999999999999999999999999999888888886
No 20
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=100.00 E-value=2.3e-41 Score=395.44 Aligned_cols=302 Identities=19% Similarity=0.186 Sum_probs=240.4
Q ss_pred CceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhc-CCCCCeEEEEEecCC----eEEEEECCCCcccccc
Q psy13357 23 SIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESL-AGYCTKINVTIYSDN----SISISDNGRGIPIDIK 97 (833)
Q Consensus 23 ~I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~-aG~~~~I~V~I~~Dg----sIsV~DnGrGIPv~~h 97 (833)
..+.++-.++++++|+||..+++. .+|+++++|+|+||+|++. +|+|+.|.|+++.++ +|+|+|||+|||.+.+
T Consensus 12 ~~k~isi~~~~~~~~~~~~~~~D~-~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l 90 (621)
T 2q2e_B 12 KQKSISVAEFFEKNRQILGFDSAP-RSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQI 90 (621)
T ss_dssp CCCCSCSHHHHHHSTTTSSCSSHH-HHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSCCCCGGGH
T ss_pred HhhcCceEEEecCCCceeEEecCH-HHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHH
Confidence 445666678999999999666665 7999999999999999998 788999999999876 7999999999999988
Q ss_pred cCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccce-----eEEEEeCC--eEEEEEE----Ecc
Q psy13357 98 IDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFL-----QLTINRNK--KIHYMEF----RYG 166 (833)
Q Consensus 98 ~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~-----~Vev~r~G--k~y~q~f----~~G 166 (833)
+. +|+.+|+|+||.. ++.|+|.||+|++++|++|+++ .|++.++| ..|+++| ++|
T Consensus 91 ~~------------iF~~~~atskf~~--~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g 156 (621)
T 2q2e_B 91 PK------------VFAKLLYGSRFHA--LKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTN 156 (621)
T ss_dssp HH------------HHSCCCCC--CCC--CC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSC
T ss_pred HH------------HhhhhccCCcccc--ccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhcc
Confidence 75 8999999999975 6789999999999999999996 89998877 6899998 666
Q ss_pred cccccccccccccccCC-ceEeccCCCCccEEEEEeCccccccccccH---HHHHHHHHHhhccCCCcEEEEeecccceE
Q psy13357 167 VLQNRIIKTINGISVSP-IKIIGDTNKQGTKIHFWVDEKIFSNIEFHY---EILKKRIRELSFLNNGVCITLIDERIKKK 242 (833)
Q Consensus 167 ~~~~~~~~~~~~~~~~~-l~~~g~~~~~GT~V~F~PD~~iF~~~~~~~---~~l~~RlrelA~LnpGl~I~l~der~~~~ 242 (833)
.+... ....+....+||+|+|+ |. ..+.. +.|.+|++++|++|||++|+|++++.
T Consensus 157 ------------~~~~~~~~~~~~~~~~GT~V~~~-----f~-~~~~~~~~~~I~~~L~~lAllnpgv~I~L~d~~~--- 215 (621)
T 2q2e_B 157 ------------EPDILVDEVRDWFRPHGTQIELE-----MR-AAYVKGRRQSIYEYLKATAIVNPHARITLIDPDG--- 215 (621)
T ss_dssp ------------SCCCCCEEECCCSCSSCCCEEEE-----CS-CCCCCCSSSSSHHHHHHHHHHCCSCEEEECCTTS---
T ss_pred ------------cccccccccccCCCCCCCEEEEE-----ec-CccchHHHHHHHHHHHHHHhhCCCCEEEEEECCc---
Confidence 33221 11223346799999999 43 23444 78999999999999999999999983
Q ss_pred EEEEeCCCcchhhhhhhcCCCccCCceEEEeeccccccCCceEEEEeeeecCCCcceeEEeecceeccCCcchHHHHHHH
Q psy13357 243 EIFEFKGGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSG 322 (833)
Q Consensus 243 ~~f~~~~Gl~~fv~~l~~~k~~l~~~~i~~~~e~~~~~~~~i~veval~~~d~~~e~i~SFVN~I~T~~GGTHv~gf~~a 322 (833)
+.|+|++|+ .+++....+++|.++ +.. .+ .++++++|+++| ++.||||+++|++||
T Consensus 216 ~~~~~~gg~----~~L~~~~~~i~p~~~---G~~-----~~-~~eval~~~~~~--~i~sFvN~i~T~~GG--------- 271 (621)
T 2q2e_B 216 NEEVFERAT----DKMPEPAEEILPHPE---GIE-----LG-TLMKMLHYTERQ--KLAPFLRYSFCKIGL--------- 271 (621)
T ss_dssp CCEEEECCC----CCCCCCCCCCCCCST---TCC-----HH-HHHHHHHHCC-------CTTSSSSCC--C---------
T ss_pred eEEEeCCcc----cchhcccccccCCce---eec-----cC-eEEEEEeeCCCe--EEEEEeCCcccCCCH---------
Confidence 579999987 345555555665542 222 12 477899999888 589999999999999
Q ss_pred HHHHHHHHHHHcccccc-cCCCCCHHHHhhcceeEEEEeecCCCCCccccccccccccchhhHHHHHHHHHHHHH
Q psy13357 323 ITRAINKYIEENEFLKK-SKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQ 396 (833)
Q Consensus 323 ltr~in~y~~~~~l~Kk-~k~~l~~~DIregL~avIsvki~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~ 396 (833)
+++|+|+++.++.|+ .+.+++++|||+||++|+||++++|||+ .++++++.++.+.|..||.
T Consensus 272 --r~in~~~~~~~l~k~~~~~~lt~dDiregL~avisvki~~Pqtk----------~l~pige~~i~~~l~~~~~ 334 (621)
T 2q2e_B 272 --LTAEEICKAAGLDPEIDPHALGRHEARKLIEAFEKVKIMAPPTD----------CLSPIGEDLIYRGLEKETT 334 (621)
T ss_dssp --HHHHHHHHTTTCCTTSCSSSCCSSSSTTTTHHHHTSCCSCCCST----------TCCCCCHHHHHHHHHHHSC
T ss_pred --HHHHHHHHHhCccccccCCCCCHHHHHhhcEEEEEEECCCCCcc----------ccChhHHHHHHHHHHHhcC
Confidence 578999999888876 5578999999999999999999999754 6788999999999999984
No 21
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.94 E-value=8.4e-28 Score=277.55 Aligned_cols=288 Identities=15% Similarity=0.125 Sum_probs=206.6
Q ss_pred cCceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCCC-CCeEEEEEecCC------eEEEEECCCCccc
Q psy13357 22 SSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGY-CTKINVTIYSDN------SISISDNGRGIPI 94 (833)
Q Consensus 22 ~~I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG~-~~~I~V~I~~Dg------sIsV~DnGrGIPv 94 (833)
+.++.++..|.++++|+||+.+.+. ..|+++++|+|+||+|++..|. ...|.|++..++ .|+|.|||+|||.
T Consensus 5 ~~~k~isi~eff~~~~~l~i~~~d~-~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~ 83 (530)
T 2zbk_B 5 EKFTSLSPAEFFKRNPELAGFPNPA-RALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPP 83 (530)
T ss_dssp ---------CGGGTCCGGGTCSSHH-HHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCG
T ss_pred HHhhhcChhheeecCCCceEEcCcH-HHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCcCceEEEEEEECCCCCCH
Confidence 3566677789999999999887765 6899999999999999986542 237899888755 7999999999998
Q ss_pred ccccCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhccc-----ceeEEEEeCCe--EEEEEEEccc
Q psy13357 95 DIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSR-----FLQLTINRNKK--IHYMEFRYGV 167 (833)
Q Consensus 95 ~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~-----~~~Vev~r~Gk--~y~q~f~~G~ 167 (833)
+..+. +|..+++++|+. +..++|.+|+|+++++.+++ ++.|++..++. .+...+.-..
T Consensus 84 e~l~~------------iF~~f~~tsk~~---~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~ 148 (530)
T 2zbk_B 84 QEVPN------------AFGRVLYSSKYV---NRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDI 148 (530)
T ss_dssp GGSHH------------HHTSCCCSCCCC---CSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEET
T ss_pred HHHHH------------HhccccccCCcc---cccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecc
Confidence 87764 898888999983 45678889999999999998 68888877653 3333332110
Q ss_pred ccccccccccccccCCceEec-cCCCCccEEEEEeCccccccccccH-HHHHHHHHHhhccCCCcEEEEeecccceEEEE
Q psy13357 168 LQNRIIKTINGISVSPIKIIG-DTNKQGTKIHFWVDEKIFSNIEFHY-EILKKRIRELSFLNNGVCITLIDERIKKKEIF 245 (833)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~~g-~~~~~GT~V~F~PD~~iF~~~~~~~-~~l~~RlrelA~LnpGl~I~l~der~~~~~~f 245 (833)
. .......+....+ ....+||+|+|+ |....+.. ..+.++++++|++||+++|.|.+... +.|
T Consensus 149 ~-------~~~g~~~~~~~~~~~~~~~GT~V~v~-----l~~~~~e~~~~i~~~l~~~Al~~p~v~~~l~~~~~---~~~ 213 (530)
T 2zbk_B 149 N-------KNEPIIVERGSVENTRGFHGTSVAIS-----IPGDWPKAKSRIYEYIKRTYIITPYAEFIFKDPEG---NVT 213 (530)
T ss_dssp T-------TTEEEEEEEEEEECCSSCCEEEEEEE-----EECCHHHHHHHHHHHHHHHHHHCTTCCEEEECTTS---CEE
T ss_pred c-------ccCCccccccccCCCCCCCCcEEEEE-----eccchhhHHHHHHHHHHHHHHHCCCcEEEEEECCC---eEE
Confidence 0 0001112222222 225789999999 54444555 78999999999999999999998753 457
Q ss_pred EeCCCcchhhhhhhcCCCccCCceEEEeeccccccCCceEEEEeee-ecCCCcc-eeEEeecceeccCCcchHHHHHHHH
Q psy13357 246 EFKGGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQ-WNNSYNE-NILCFTNNILQVDGGTHLTGLRSGI 323 (833)
Q Consensus 246 ~~~~Gl~~fv~~l~~~k~~l~~~~i~~~~e~~~~~~~~i~veval~-~~d~~~e-~i~SFVN~I~T~~GGTHv~gf~~al 323 (833)
+|++... .+. +.+-... .|+.|+.++.+++ |+.++.+ ++.+|+|+++|..||+|.++|++++
T Consensus 214 ~~~~~~~----~lp-------~~~~~~~-----~~~~Gi~~~~~l~~~~~~~~~~~l~~fl~~~ft~~g~~~a~~~~~~~ 277 (530)
T 2zbk_B 214 YYPRLTN----KIP-------KPPQEVK-----PHPYGVDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELA 277 (530)
T ss_dssp EECCCCC----CCC-------CCCCCCC-----CCGGGCCHHHHHHHHTTCSSCCBHHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred EecCccc----ccc-------CCcceec-----cCCCChhHHHHHHHHhccCCCceeHhhhcCccccccHHHHHHHHHhh
Confidence 7775321 111 1111111 1336788888887 7777766 7899999999999999999998875
Q ss_pred HHHHHHHHHHccccccc-CCCCCHHHHhhcceeEEEEe-ecCCCCC
Q psy13357 324 TRAINKYIEENEFLKKS-KIEIIGEDIREGLTCVLSIK-IPDPKFN 367 (833)
Q Consensus 324 tr~in~y~~~~~l~Kk~-k~~l~~~DIregL~avIsvk-i~nP~Fe 367 (833)
++.++. ..+++++|++++|.++++++ +++|.=+
T Consensus 278 -----------gl~~~~~~~~l~~~~~~~ll~a~~~~k~~~~P~~~ 312 (530)
T 2zbk_B 278 -----------GLKPNKKVKNLTEEEITRLVETFKKDEDFRSPSAD 312 (530)
T ss_dssp -----------TCCSSCBSSCCCHHHHHHHHHHHHHCCCCCCCCST
T ss_pred -----------CCCCCCCcccCCHHHHHHHHHHHHhccCCCCCCcc
Confidence 666665 35899999999999999998 8887643
No 22
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.92 E-value=1.9e-24 Score=237.51 Aligned_cols=287 Identities=18% Similarity=0.186 Sum_probs=191.4
Q ss_pred ccCceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC--eEEEEECCCCccccccc
Q psy13357 21 ASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYSDN--SISISDNGRGIPIDIKI 98 (833)
Q Consensus 21 ~~~I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg--sIsV~DnGrGIPv~~h~ 98 (833)
+..|+.|+.-..-+-++|++| ..|.++++|+|+||+|+. ++.|.|.++.+| .|+|.|||+|||.+..+
T Consensus 6 ~~~I~~L~~~~~~~Iaagevi------~~~~~vv~eLv~NAidA~----a~~I~I~i~~~~~~~I~V~DnG~GI~~~~l~ 75 (348)
T 3na3_A 6 AGVIRRLDETVVNRIAAGEVI------QRPANAIKEMIENCLDAK----STSIQVIVKEGGLKLIQIQDNGTGIRKEDLD 75 (348)
T ss_dssp CCCCCCCCHHHHHHHHHHHHC------CSHHHHHHHHHHHHHHTT----CSEEEEEEEGGGTSEEEEEECSCCCCGGGGG
T ss_pred ccccccCCHHHHHhhcccCcc------cCHHHHHHHHHHHHHHcC----CCEEEEEEEeCCEEEEEEEECCcCcChHHhh
Confidence 456999999999999999997 468999999999999984 899999999876 49999999999998776
Q ss_pred CCCCCCCCcceeeeeeeccccCCCCCC--c-ceecCCcccccchhhhhcccceeEEEEeCC--eEEEEEEEccccccccc
Q psy13357 99 DDKHKPKRSAAEIVMTELHAGGKFNKN--S-YKISGGLHGIGLSCVNGLSRFLQLTINRNK--KIHYMEFRYGVLQNRII 173 (833)
Q Consensus 99 ~~~~~~~~~~~E~Vft~LhAGgKFdd~--~-ykvSgGlhGvG~svvNAlS~~~~Vev~r~G--k~y~q~f~~G~~~~~~~ 173 (833)
. + +..|+++|+++. . ...|+|+||+|++++|++| +++|+++++| ..|++.|++|
T Consensus 76 ~------------~-~~~~~tsK~~~~~dl~~i~s~GfrGeaL~Si~avs-~l~v~sr~~~~~~~~~~~~~~G------- 134 (348)
T 3na3_A 76 I------------V-CERFTTSKLQSFEDLASISTYGFRGEALASISHVA-HVTITTKTADGKCAYRASYSDG------- 134 (348)
T ss_dssp T------------T-TSTTCCSSCCCC---------CCTTCHHHHHHHSS-EEEEEEECTTCSSEEEEEEETT-------
T ss_pred h------------h-hccccccccCcchhhhccccCCcCChHHHHhhccc-EEEEEEEECCCCceEEEEEeCC-------
Confidence 4 4 478999998642 3 3689999999999999999 7999999988 4899999998
Q ss_pred ccccccccCCceEeccCCCCccEEEE------EeCccccc-cccccHHHHHHHHHHhhccCCCcEEEEeecccceEEEEE
Q psy13357 174 KTINGISVSPIKIIGDTNKQGTKIHF------WVDEKIFS-NIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFE 246 (833)
Q Consensus 174 ~~~~~~~~~~l~~~g~~~~~GT~V~F------~PD~~iF~-~~~~~~~~l~~RlrelA~LnpGl~I~l~der~~~~~~f~ 246 (833)
.+..+++.. ..++||+|+| +|++.+|- +...+++.|.++++++|++||+++|.|.+..... ..|.
T Consensus 135 -----~~~~~~~~~--~~~~GTtV~v~~LF~n~P~R~k~lk~~~~e~~~i~~~l~~~Al~~p~v~f~l~~~g~~~-~~~~ 206 (348)
T 3na3_A 135 -----KLKAPPKPC--AGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGETV-ADVR 206 (348)
T ss_dssp -----EESSCCEEE--CCCSEEEEEEESTTTTCHHHHHTSCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETTCSS-CSEE
T ss_pred -----EEeeeeeEe--cCCCCcEEEECcccccCchhhhhccccHHHHHHHHHHHHHHHhhCCCeEEEEEECCEEE-EEee
Confidence 555444333 3579999999 69999884 5567888999999999999999999999875321 1133
Q ss_pred eCC--CcchhhhhhhcCCCccCCceEEEeeccccccCCceEEEEeee---ecCCCcceeEEeecceeccCCcchHHHHHH
Q psy13357 247 FKG--GTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQ---WNNSYNENILCFTNNILQVDGGTHLTGLRS 321 (833)
Q Consensus 247 ~~~--Gl~~fv~~l~~~k~~l~~~~i~~~~e~~~~~~~~i~veval~---~~d~~~e~i~SFVN~I~T~~GGTHv~gf~~ 321 (833)
..+ .+.+-+..+-. .. +....+.++.+.. ..++.++.-+. ++.+ ...++-|||+.+-..-
T Consensus 207 ~~~~~~~~~~i~~i~G-~~-~~~~l~~v~~~~~---~~~~~i~G~is~p~~~~~-~~~q~~fVNgR~v~~~--------- 271 (348)
T 3na3_A 207 TLPNASTVDNIRSIFG-NA-VSRELIEIGCEDK---TLAFKMNGYISNANYSVK-KCIFLLFINHRLVEST--------- 271 (348)
T ss_dssp CCTTCCHHHHHHHHHC-HH-HHTTEEEEEEEEG---GGTEEEEEEEECSSCCBS-SCEEEEEETTEECCCT---------
T ss_pred cCCCCCHHHHHHHHhC-hH-hHhhcEEEEeecC---CccEEEEEEEeCCccCCC-cccEEEEECCeEecCH---------
Confidence 322 23333333221 11 1122333433220 01355544332 2211 2357999999998765
Q ss_pred HHHHHHHHHHHHcccccccCCCCCHHHHhhcceeEEEEeecCCCCC---cccccc
Q psy13357 322 GITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFN---SQTKNK 373 (833)
Q Consensus 322 altr~in~y~~~~~l~Kk~k~~l~~~DIregL~avIsvki~nP~Fe---gQTK~k 373 (833)
.|.++|++.-+ .++.+.. .=.+++++.+|.-..| ..||..
T Consensus 272 ~l~~ai~~~y~--~~l~~~~----------~P~~~L~l~~~p~~vDVNvhP~K~e 314 (348)
T 3na3_A 272 SLRKAIETVYA--AYLPKNT----------HPFLYLSLEISPQNVDVNVHPTKHE 314 (348)
T ss_dssp THHHHHHHHHH--TTSCTTC----------BCEEEEEEECC--------------
T ss_pred HHHHHHHHHHH--HhCcCCC----------ceEEEEEEEeChhheeeeeCCCcCE
Confidence 23445544332 2333221 2378899998866665 444443
No 23
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.92 E-value=4.5e-24 Score=234.09 Aligned_cols=283 Identities=20% Similarity=0.243 Sum_probs=205.9
Q ss_pred CceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC--eEEEEECCCCcccccccCC
Q psy13357 23 SIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYSDN--SISISDNGRGIPIDIKIDD 100 (833)
Q Consensus 23 ~I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg--sIsV~DnGrGIPv~~h~~~ 100 (833)
.|+.|+.-..-+-.+|..| ..++++++|+|+||+|+. ++.|.|.++.+| +|+|.|||+|||.+..+.
T Consensus 4 ~I~~L~~~~~~~I~agevi------~~~~~~v~ELi~NaidA~----a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~- 72 (333)
T 1b63_A 4 PIQVLPPQLANQIAAGEVV------ERPASVVKELVENSLDAG----ATRIDIDIERGGAKLIRIRDNGCGIKKDELAL- 72 (333)
T ss_dssp CCCCCCHHHHHHHHHHHHC------SSHHHHHHHHHHHHHHTT----CSEEEEEEEGGGTSEEEEEECSCCCCGGGHHH-
T ss_pred cceECCHHHHHHHhcCCch------hCHHHHHHHHHHHHHHCC----CCeEEEEEEeCCceEEEEEEcCCCcCHHHHHH-
Confidence 3899999988899999887 479999999999999964 789999999876 799999999999987764
Q ss_pred CCCCCCcceeeeeeeccccCCCCC--Ccc-eecCCcccccchhhhhcccceeEEEEeCCe--EEEEEEEccccccccccc
Q psy13357 101 KHKPKRSAAEIVMTELHAGGKFNK--NSY-KISGGLHGIGLSCVNGLSRFLQLTINRNKK--IHYMEFRYGVLQNRIIKT 175 (833)
Q Consensus 101 ~~~~~~~~~E~Vft~LhAGgKFdd--~~y-kvSgGlhGvG~svvNAlS~~~~Vev~r~Gk--~y~q~f~~G~~~~~~~~~ 175 (833)
+| ..|+++|+.+ +.+ ..+.|++|+|+++++++| +++|+++++|. .|++ |.+|
T Consensus 73 -----------~~-~~~~tsK~~~~~d~~~~~~~G~~G~gl~si~~vs-~l~v~s~~~~~~~~~~~-~~~g--------- 129 (333)
T 1b63_A 73 -----------AL-ARHATSKIASLDDLEAIISLGFRGEALASISSVS-RLTLTSRTAEQQEAWQA-YAEG--------- 129 (333)
T ss_dssp -----------HH-STTCCSSCCSHHHHHTCCSSCCSSCHHHHHHTTS-EEEEEEECTTCSSEEEE-EEET---------
T ss_pred -----------hh-hcccccCccccchhhhccccCccccchhhhhcCC-cEEEEEecCCCceEEEE-EEcC---------
Confidence 56 4688889864 223 358899999999999999 79999998773 5655 6666
Q ss_pred ccccccCCceEeccCCCCccEEEEE------eCccccc-cccccHHHHHHHHHHhhccCCCcEEEEeecccceEEEEEeC
Q psy13357 176 INGISVSPIKIIGDTNKQGTKIHFW------VDEKIFS-NIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFK 248 (833)
Q Consensus 176 ~~~~~~~~l~~~g~~~~~GT~V~F~------PD~~iF~-~~~~~~~~l~~RlrelA~LnpGl~I~l~der~~~~~~f~~~ 248 (833)
... .....+....+||+|+|+ |++..|. ....+++.|.++++++|+++|+++|+|.+.. +..|.++
T Consensus 130 ---~~~-~~~~~~~~~~~GT~V~v~~Lf~n~P~r~kflk~~~~e~~~i~~~~~~~al~~p~v~~~l~~ng---~~~~~~~ 202 (333)
T 1b63_A 130 ---RDM-NVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIALARFDVTINLSHNG---KIVRQYR 202 (333)
T ss_dssp ---TTT-EEEEEEECCCSEEEEEEESTTTTCHHHHHTCCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETT---EEEEEEC
T ss_pred ---Ccc-eEeeecccCCCCCEEEEecccccchhhhhhhccHHHHHHHHHHHHHHHhccCCCcEEEEEECC---EEEEecC
Confidence 220 111122345799999999 9998884 4566788999999999999999999998853 2456666
Q ss_pred C-----CcchhhhhhhcCCCccCCceEEEeeccccccCCceEEEEeeeecC---CC-cceeEEeecceeccCCcchHHHH
Q psy13357 249 G-----GTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNN---SY-NENILCFTNNILQVDGGTHLTGL 319 (833)
Q Consensus 249 ~-----Gl~~fv~~l~~~k~~l~~~~i~~~~e~~~~~~~~i~veval~~~d---~~-~e~i~SFVN~I~T~~GGTHv~gf 319 (833)
. ++.+++..+.. .. +....+.+..+. +++.++..+++.+ ++ ...++.|||+++..+-
T Consensus 203 ~~~~~~~~~~~i~~i~G-~~-~~~~li~i~~~~-----~~~~v~G~i~~p~~~~~~~~~~~~~fvNgR~V~~~------- 268 (333)
T 1b63_A 203 AVPEGGQKERRLGAICG-TA-FLEQALAIEWQH-----GDLTLRGWVADPNHTTPALAEIQYCYVNGRMMRDR------- 268 (333)
T ss_dssp CCCTTCCTHHHHHHHHC-HH-HHHHEEEEEEEE-----TTEEEEEEEECGGGCCTTGGGCEEEEETTEECCCH-------
T ss_pred CCCCCchHHHHHHHHhC-hh-hHhheEEEEecC-----CCEEEEEEEEcCccccCCCCCcEEEEECCEEecCH-------
Confidence 4 56677777652 22 223456666655 6788888888765 44 5679999999998752
Q ss_pred HHHHHHHHHHHHHHcccccccCCCCCHHHHhhcceeEEEEeecCCCCC---ccccccc
Q psy13357 320 RSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFN---SQTKNKL 374 (833)
Q Consensus 320 ~~altr~in~y~~~~~l~Kk~k~~l~~~DIregL~avIsvki~nP~Fe---gQTK~kL 374 (833)
.|.++|++.-+. ++.+.. .=.+++++.+|.-..+ ..||...
T Consensus 269 --~l~~ai~~~y~~--~l~~~~----------~P~~~l~l~~~p~~vDvNvhP~K~ev 312 (333)
T 1b63_A 269 --LINHAIRQACED--KLGADQ----------QPAFVLYLEIDPHQVDVNVHPAKHEV 312 (333)
T ss_dssp --HHHHHHHHHHHH--HSSSCC----------CCCEEEEEECCGGGEECTTSTTCCCC
T ss_pred --HHHHHHHHHHHh--hccCCC----------CcEEEEEEEeCchhccceECCCcCEE
Confidence 344445443322 122211 1267888888754444 4455443
No 24
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.8e-23 Score=231.46 Aligned_cols=289 Identities=17% Similarity=0.181 Sum_probs=188.4
Q ss_pred cCceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC--eEEEEECCCCcccccccC
Q psy13357 22 SSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYSDN--SISISDNGRGIPIDIKID 99 (833)
Q Consensus 22 ~~I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg--sIsV~DnGrGIPv~~h~~ 99 (833)
..|+.|+.--.-+-++|++| ..|+++|+|+|+||+|+. |+.|.|.++.+| +|+|.|||+|||.+.++.
T Consensus 4 ~~I~~L~~~~~~~I~agevi------~~~~~vv~eLv~NaiDA~----a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~ 73 (367)
T 3h4l_A 4 TQIHQINDIDVHRITSGQVI------TDLTTAVKELVDNSIDAN----ANQIEIIFKDYGLESIECSDNGDGIDPSNYEF 73 (367)
T ss_dssp ---------CTHHHHHHHHC------CSHHHHHHHHHHHHHHTT----CSEEEEEEETTTTSEEEEEECSCCCCGGGTTT
T ss_pred CcceeCCHHHHHHhcCCCcc------cCHHHHHHHHHHHHHHCC----CCEEEEEEEeCCEEEEEEEECCCCcChhHhcc
Confidence 35899999999999999997 468999999999999964 889999998776 899999999999998764
Q ss_pred CCCCCCCcceeeeeeeccccCCCCC---CcceecCCcccccchhhhhcccceeEEEEeCC-eEEEEEEE-cccccccccc
Q psy13357 100 DKHKPKRSAAEIVMTELHAGGKFNK---NSYKISGGLHGIGLSCVNGLSRFLQLTINRNK-KIHYMEFR-YGVLQNRIIK 174 (833)
Q Consensus 100 ~~~~~~~~~~E~Vft~LhAGgKFdd---~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~G-k~y~q~f~-~G~~~~~~~~ 174 (833)
+ +..|+++|+.+ .....|+|+||+|+++++++| +++|+++++| ..|++.|. +|
T Consensus 74 ------------~-~~~~~tsK~~~~~Dl~~i~t~GfrGeaL~Si~avS-~l~V~sr~~~~~~~~~~~~~~G-------- 131 (367)
T 3h4l_A 74 ------------L-ALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGIA-KLSVITTTSPPKADKLEYDMVG-------- 131 (367)
T ss_dssp ------------T-TCCEEC---------CCCCEEEETTHHHHHHHHSS-EEEEEEESSTTCEEEEEECTTC--------
T ss_pred ------------c-eeccccCcCCchhhhhhhhccCccchHHHHhhccC-EEEEEEEECCCCEEEEEEcCCC--------
Confidence 3 46899999754 234679999999999999999 6999999887 78999997 56
Q ss_pred cccccccCCceEeccCCCCccEEEE------EeCccc-cc-cccccHHHHHHHHHHhhccCCCcEEEEeeccc--ceEEE
Q psy13357 175 TINGISVSPIKIIGDTNKQGTKIHF------WVDEKI-FS-NIEFHYEILKKRIRELSFLNNGVCITLIDERI--KKKEI 244 (833)
Q Consensus 175 ~~~~~~~~~l~~~g~~~~~GT~V~F------~PD~~i-F~-~~~~~~~~l~~RlrelA~LnpGl~I~l~der~--~~~~~ 244 (833)
.+..+ .+...++||+|+| +|++.+ |. +...++..|.++++++|+++|+++|+|.+... .....
T Consensus 132 ----~~~~~---~~~~~~~GTtV~v~~LF~n~P~R~k~flk~~~~e~~~i~~~l~~~Al~~p~v~~~l~~~~~~~~~~~~ 204 (367)
T 3h4l_A 132 ----HITSK---TTTSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYAIINAAIKFSVWNITPKGKKNLI 204 (367)
T ss_dssp ----CEEEE---EEECCSSEEEEEEESTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTSCEEEE
T ss_pred ----cEEee---ccccCCCCeEEEEchhhccCchhhhhhccchHHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCcceEE
Confidence 43322 1234679999999 599988 84 56778899999999999999999999987432 22344
Q ss_pred EEeCC--CcchhhhhhhcCCCccCCceEEEeec--c-------------cc---ccCCceEEEEeeee-----cCCCcce
Q psy13357 245 FEFKG--GTSGFVSYINKSKLVVHPTIFQAIGN--K-------------IS---EKKNNINIDVSMQW-----NNSYNEN 299 (833)
Q Consensus 245 f~~~~--Gl~~fv~~l~~~k~~l~~~~i~~~~e--~-------------~~---~~~~~i~veval~~-----~d~~~e~ 299 (833)
|...+ .+.+-+..+-.. . +....+.+..+ . .. ....++.++.-+.- ..+....
T Consensus 205 ~~t~~~~~~~~~i~~i~G~-~-~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~is~p~~~~~r~~~~~ 282 (367)
T 3h4l_A 205 LSTMRNSSMRKNISSVFGA-G-GMRGLEEVDLVLDLNPFKNRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDR 282 (367)
T ss_dssp EECCSSCCHHHHHHHHHCT-T-TTTTEEEEEEEEECGGGCCCCC------------CCEEEEEEEEECCSTTCSBSSSSS
T ss_pred EECCCCCCHHHHHHHHhCH-H-HHhccEEEecccccccccccccccccccccccccCCcEEEEEEEeCCcccccCCCCCc
Confidence 54432 233333333211 1 11122222220 0 00 00134555544331 1122345
Q ss_pred eEEeecceeccCCcchHHHHHHHHHHHHHHHHHHcccccccCCCCCHHHHhhcceeEEEEeecCCCCC---cccccc
Q psy13357 300 ILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFN---SQTKNK 373 (833)
Q Consensus 300 i~SFVN~I~T~~GGTHv~gf~~altr~in~y~~~~~l~Kk~k~~l~~~DIregL~avIsvki~nP~Fe---gQTK~k 373 (833)
++-|||+.+-..- .|.++|++.-+. +.+ ...=.+++++.+|.-.+| ..||..
T Consensus 283 q~~fVNgR~v~~~---------~l~~ai~~~y~~--~~~-----------~~~P~~~L~l~~~p~~vDVNVhP~K~e 337 (367)
T 3h4l_A 283 QFIYVNKRPVEYS---------TLLKCCNEVYKT--FNN-----------VQFPAVFLNLELPMSLIDVNVTPDKRV 337 (367)
T ss_dssp EEEEETTEEECCH---------HHHHHHHHHHHT--TCS-----------SCBCCEEEEEECCGGGEECCCSSSTTC
T ss_pred EEEEECCCEecCH---------HHHHHHHHHHHh--cCC-----------CCCcEEEEEEEcChHHcceeECCCCCE
Confidence 8999999998652 456666654432 222 122378889998865555 455544
No 25
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.87 E-value=2e-21 Score=215.48 Aligned_cols=289 Identities=16% Similarity=0.187 Sum_probs=173.7
Q ss_pred cCceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC--eEEEEECCCCcccccccC
Q psy13357 22 SSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYSDN--SISISDNGRGIPIDIKID 99 (833)
Q Consensus 22 ~~I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg--sIsV~DnGrGIPv~~h~~ 99 (833)
..|+.|+.....+-++|++| ..++++++|+|+||+|+. ++.|.|.+..+| .|+|.|||+|||.+..+.
T Consensus 13 ~~I~~L~~~~~~~i~agevi------~~~~~vl~eLv~NAiDA~----a~~I~I~i~~~~~~~I~V~DnG~Gi~~~~l~~ 82 (365)
T 1h7s_A 13 KAIKPIDRKSVHQICSGQVV------LSLSTAVKELVENSLDAG----ATNIDLKLKDYGVDLIEVSDNGCGVEEENFEG 82 (365)
T ss_dssp ----------------CEEE------CCHHHHHHHHHHHHHHTT----CSEEEEEEEGGGTSEEEEEECSCCCCGGGSGG
T ss_pred hhhccCCHHHHHHhcCCCch------hhHHHHHHHHHHHHHHCC----CCEEEEEEEeCCcEEEEEEECCCCcCHHHHHH
Confidence 46999999999999999997 468999999999999964 789999998765 899999999999987764
Q ss_pred CCCCCCCcceeeeeeeccccCCCCC--Ccce-ecCCcccccchhhhhcccceeEEEEeCCe--EEEEEEE-ccccccccc
Q psy13357 100 DKHKPKRSAAEIVMTELHAGGKFNK--NSYK-ISGGLHGIGLSCVNGLSRFLQLTINRNKK--IHYMEFR-YGVLQNRII 173 (833)
Q Consensus 100 ~~~~~~~~~~E~Vft~LhAGgKFdd--~~yk-vSgGlhGvG~svvNAlS~~~~Vev~r~Gk--~y~q~f~-~G~~~~~~~ 173 (833)
+| ..|+++|+.+ +.|. .|.|+||+|+++++++| +++|+++++|. .|++.|. +|
T Consensus 83 ------------~f-~~~~tsK~~~~~dl~~i~s~G~rG~gl~si~~vs-~v~v~t~~~~~~~~~~~~~~~~G------- 141 (365)
T 1h7s_A 83 ------------LT-LKHHTSKIQEFADLTQVETFGFRGEALSSLCALS-DVTISTCHASAKVGTRLMFDHNG------- 141 (365)
T ss_dssp ------------GG-C----------CCTTCSEEESSSSSHHHHHHHHS-EEEEEEECTTCSSCEEEEECTTS-------
T ss_pred ------------Hh-hhccccccccccchhcccccCCCCchhhhhhhhc-cEEEEEccCCCcceEEEEEcCCC-------
Confidence 55 4578888764 3455 58999999999999999 99999998775 7999997 56
Q ss_pred ccccccccCCceEeccCCCCccEEEEE----eCcc--c-cc-cccccHHHHHHHHHHhhccCCCcEEEEeeccc--ceEE
Q psy13357 174 KTINGISVSPIKIIGDTNKQGTKIHFW----VDEK--I-FS-NIEFHYEILKKRIRELSFLNNGVCITLIDERI--KKKE 243 (833)
Q Consensus 174 ~~~~~~~~~~l~~~g~~~~~GT~V~F~----PD~~--i-F~-~~~~~~~~l~~RlrelA~LnpGl~I~l~der~--~~~~ 243 (833)
.... .......+||+|+|+ +.|. . |. ....+++.|.++++++|+++|+++|.|.+... ....
T Consensus 142 -----~~~~---~~~~~~~~GT~V~v~~LF~n~P~R~k~flk~~~~e~~~i~~~v~~~al~~p~v~f~l~~~~~~~~~~~ 213 (365)
T 1h7s_A 142 -----KIIQ---KTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQP 213 (365)
T ss_dssp -----CEEE---EEECCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTSCEEE
T ss_pred -----ceEe---ecccCCCCCcEEEEeecccccchhhhhhccchHHHHHHHHHhhhhhhhcCCceEEEEEecCCCCcEEE
Confidence 3321 112345799999997 2221 1 42 34557788999999999999999999998762 2346
Q ss_pred EEEeCC--CcchhhhhhhcCCCccCCceEEEeeccc-------------cccCCceEEEEeeee---c--CCCcceeEEe
Q psy13357 244 IFEFKG--GTSGFVSYINKSKLVVHPTIFQAIGNKI-------------SEKKNNINIDVSMQW---N--NSYNENILCF 303 (833)
Q Consensus 244 ~f~~~~--Gl~~fv~~l~~~k~~l~~~~i~~~~e~~-------------~~~~~~i~veval~~---~--d~~~e~i~SF 303 (833)
.|..++ ++.+.+..+.... .. ...+.+..+.. +....++.+..-+.- + .+....++-|
T Consensus 214 ~~~~~~~~~~~~~i~~i~G~~-~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~i~~p~~~~~r~~~~~q~~f 291 (365)
T 1h7s_A 214 VVCTGGSPSIKENIGSVFGQK-QL-QSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFF 291 (365)
T ss_dssp EEECCCCSSHHHHHHHHHCHH-HH-HTEEECCCCCCCHHHHHHHTCCTTTTTSCCCEEEEEEECCSTTTSBSSSTTEEEE
T ss_pred EEEcCCCchHHHHHHHhcChH-hH-hceEEEeccCCcccccccccccccccccccEEEEEEEeCcccccccCCCcceEEE
Confidence 677764 4666666553211 00 11222211100 000024555543322 1 1223457999
Q ss_pred ecceeccCCcchHHHHHHHHHHHHHHHHHHcccccccCCCCCHHHHhhcceeEEEEeecCCCCC---cccccc
Q psy13357 304 TNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFN---SQTKNK 373 (833)
Q Consensus 304 VN~I~T~~GGTHv~gf~~altr~in~y~~~~~l~Kk~k~~l~~~DIregL~avIsvki~nP~Fe---gQTK~k 373 (833)
||+.+-... .|.++|++.-+. ++.+ ..=.+++++.+|.-..+ ..||..
T Consensus 292 vNgR~v~~~---------~l~~ai~~~y~~--~~~~-----------~~P~~~L~l~~~p~~vDvNVhP~K~e 342 (365)
T 1h7s_A 292 INRRPCDPA---------KVCRLVNEVYHM--YNRH-----------QYPFVVLNISVDSECVDINVTPDKRQ 342 (365)
T ss_dssp ETTEEECCH---------HHHHHHHHHHHT--TCTT-----------CBCCEEEEEECCGGGEEEC------C
T ss_pred ECCeEecCH---------HHHHHHHHHHHh--hCcc-----------CCcEEEEEEEeChHHcceEECCCcCE
Confidence 999997642 355556554332 2221 23478889988755555 445544
No 26
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.75 E-value=3.2e-19 Score=203.80 Aligned_cols=286 Identities=15% Similarity=0.165 Sum_probs=182.8
Q ss_pred cCceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCC-CCCeEEEEEecCC------eEEEEECCCCccc
Q psy13357 22 SSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAG-YCTKINVTIYSDN------SISISDNGRGIPI 94 (833)
Q Consensus 22 ~~I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG-~~~~I~V~I~~Dg------sIsV~DnGrGIPv 94 (833)
+.++.++..|.++++|+||+.+++. ..|++++.|+|+||+|++..| ....|.|++..++ .|+|.|||+|||.
T Consensus 6 ~~~k~is~~eff~~~~~~~~~~~d~-~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~ 84 (471)
T 1mu5_A 6 EKFTSLSPAEFFKRNPELAGFPNPA-RALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPP 84 (471)
T ss_dssp -----CCHHHHHHHCGGGTTCSSHH-HHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCG
T ss_pred HHHhhcCHHHhhhcCCceEEEeCCH-HHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCcCcEEEEEEEECCCCCCH
Confidence 3566778889999999999988886 689999999999999998654 2237999988744 7999999999999
Q ss_pred ccccCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccc-----eeEEEEeCCe--EEEEEEEccc
Q psy13357 95 DIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRF-----LQLTINRNKK--IHYMEFRYGV 167 (833)
Q Consensus 95 ~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~-----~~Vev~r~Gk--~y~q~f~~G~ 167 (833)
+..+. +|..+++++|+. .+. +.|.+|+|+++++.+++. +.|++..++. .+...+.-..
T Consensus 85 e~l~~------------iF~~f~~tsk~~--~~~-~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~ 149 (471)
T 1mu5_A 85 QEVPN------------AFGRVLYSSKYV--NRQ-TRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDI 149 (471)
T ss_dssp GGHHH------------HHHCCCCC-CCC--CSC-CSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECT
T ss_pred HHHHH------------Hhcccccccccc--ccc-CCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccc
Confidence 87764 888888999883 223 345599999999999997 8888877653 3333332110
Q ss_pred ccccccccccccccCCceEe-ccCCCCccEEEEEeCccccccccccH-HHHHHHHHHhhccCCCcEEEEeecccceEEEE
Q psy13357 168 LQNRIIKTINGISVSPIKII-GDTNKQGTKIHFWVDEKIFSNIEFHY-EILKKRIRELSFLNNGVCITLIDERIKKKEIF 245 (833)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~~-g~~~~~GT~V~F~PD~~iF~~~~~~~-~~l~~RlrelA~LnpGl~I~l~der~~~~~~f 245 (833)
. ...+....+ ... .....+||+|+++ |....+.. +.|.++++++|++||+++|.|.+... +.|
T Consensus 150 ~------~~~g~~~~~-~~~~~~~~~~GT~V~v~-----l~~~~~e~~~~I~~~l~~~al~~p~v~i~l~~~~~---~~~ 214 (471)
T 1mu5_A 150 N------KNEPIIVER-GSVENTRGFHGTSVAIS-----IPGDWPKAKSRIYEYIKRTYIITPYAEFIFKDPEG---NVT 214 (471)
T ss_dssp T------TCCEEEEEE-EEEECCTTCCEEEEEEE-----EECCHHHHHHHHHHHHHHHHHHCTTCEEEEECTTC---CEE
T ss_pred c------ccCCccccc-ccccCCCCCCCEEEEEE-----EcCCcchHHHHHHHHHHHHHhHCCCeEEEEEECCc---eEE
Confidence 0 000022211 112 1245789999998 44333444 78999999999999999999998742 346
Q ss_pred EeCCCcchhhhhhhcCCCccCCceEEEeeccccccCCceEEEEeeeecCC-Ccc-eeEEeecceeccCCcchHHHHHHHH
Q psy13357 246 EFKGGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNS-YNE-NILCFTNNILQVDGGTHLTGLRSGI 323 (833)
Q Consensus 246 ~~~~Gl~~fv~~l~~~k~~l~~~~i~~~~e~~~~~~~~i~veval~~~d~-~~e-~i~SFVN~I~T~~GGTHv~gf~~al 323 (833)
.+..... .+++.+.... .|+.|+.++..+..... -.. .+.+|+-.-++.-|.
T Consensus 215 ~~~r~~~-----------~lp~~~~~~~-----p~~~G~~l~~~~~~~~~~~~~~~~~~fl~~~f~~v~~---------- 268 (471)
T 1mu5_A 215 YYPRLTN-----------KIPKPPQEVK-----PHPYGVDREEIKILINNLKRDYTIKEFLVNEFQSIGD---------- 268 (471)
T ss_dssp EECCCCC-----------CCCCCCCCCC-----CCGGGCCHHHHHHHSTTCSSCCBHHHHHTTSSSSCCH----------
T ss_pred Eeccccc-----------ccCCccceee-----cCCCchhHHHHHHHHHhcCCCcchHHhhhccccccCH----------
Confidence 6665311 1111010001 13355554433322111 111 467777776766663
Q ss_pred HHHHHHHHHHcccccccC-CCCCHHHHhhcceeEEEEe-ecCCC
Q psy13357 324 TRAINKYIEENEFLKKSK-IEIIGEDIREGLTCVLSIK-IPDPK 365 (833)
Q Consensus 324 tr~in~y~~~~~l~Kk~k-~~l~~~DIregL~avIsvk-i~nP~ 365 (833)
++..+++...++.++.+ ..++.+++..-+-++-..+ +..|.
T Consensus 269 -~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~ 311 (471)
T 1mu5_A 269 -TTADKILELAGLKPNKKVKNLTEEEITRLVETFKKYEDFRSPS 311 (471)
T ss_dssp -HHHHHHHHHTTCCTTSBGGGCCTTHHHHHHHHHHHCCCCCCCC
T ss_pred -HHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHHHhccCccCCC
Confidence 33445555556655433 3678888888777777665 55553
No 27
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=98.90 E-value=3.3e-09 Score=110.33 Aligned_cols=160 Identities=20% Similarity=0.238 Sum_probs=103.1
Q ss_pred chhHHHHHHHHHHHhhhcC--------------CCCCeEEEEEecC-CeEEEEECCCCcccccccCCCCCCCCcceeeee
Q psy13357 49 GLHHLVFEILDNAIDESLA--------------GYCTKINVTIYSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVM 113 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~a--------------G~~~~I~V~I~~D-gsIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vf 113 (833)
+....++|+|.||+|+... +..-.|.|.++.+ ..|+|.|||.||+.+..+. .|
T Consensus 32 ~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~DnG~GMs~edl~~------------~l 99 (228)
T 3t0h_A 32 NKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLIN------------NL 99 (228)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHT------------GG
T ss_pred CcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEeCCCCCCHHHHHH------------HH
Confidence 4578999999999998732 1122455555543 4899999999999876653 34
Q ss_pred eeccccCC--CCC----CcceecCCcccccchhhhhcccceeEEEEeCC-eEEEEEEEcccccccccccccccccCCceE
Q psy13357 114 TELHAGGK--FNK----NSYKISGGLHGIGLSCVNGLSRFLQLTINRNK-KIHYMEFRYGVLQNRIIKTINGISVSPIKI 186 (833)
Q Consensus 114 t~LhAGgK--Fdd----~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~G-k~y~q~f~~G~~~~~~~~~~~~~~~~~l~~ 186 (833)
++..++++ |.+ +.-..+-|+.|+|...+-++|.+++|.++..+ ..|..++..|.. ..+.+.
T Consensus 100 ~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~~~~~~w~~~g~~~----------~~v~~~-- 167 (228)
T 3t0h_A 100 GTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGS----------FTVRTD-- 167 (228)
T ss_dssp GSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTE----------EEEEEC--
T ss_pred HhhccccchhhhhhhcccCCcccCCCCChhHHHHhccCCEEEEEEecCCCCcEEEEEcCCce----------EEEeec--
Confidence 43333332 211 11246789999999999999999999998755 567777766610 111111
Q ss_pred eccCCCCccEEEEEeCcccccccc-ccHHHHHHHHHHhh--ccCCCcEEEEeecc
Q psy13357 187 IGDTNKQGTKIHFWVDEKIFSNIE-FHYEILKKRIRELS--FLNNGVCITLIDER 238 (833)
Q Consensus 187 ~g~~~~~GT~V~F~PD~~iF~~~~-~~~~~l~~RlrelA--~LnpGl~I~l~der 238 (833)
.+....+||+|+...-.. ..+ .+...|.+.++.+| .-+| |.+..++
T Consensus 168 ~~~~~~~GT~I~v~Lk~~---~~E~~e~~~i~~iv~~~a~~l~~P---i~~~~~~ 216 (228)
T 3t0h_A 168 TGEPMGRGTKVILHLKED---QTEYLEERRIKEIVKKHSQFIGYP---ITLFVEK 216 (228)
T ss_dssp CSSCCSSEEEEEEEECGG---GGGGGSHHHHHHHHHHHSTTCSSC---EEECCC-
T ss_pred CCCCCCCCcEEEEEECCc---hhhhhhHHHHHHHHHHHHhhCCCC---eEEeecc
Confidence 022457999999882211 112 34577888899998 4555 6665443
No 28
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=98.86 E-value=3.9e-09 Score=110.25 Aligned_cols=144 Identities=19% Similarity=0.216 Sum_probs=96.7
Q ss_pred hhHHHHHHHHHHHhhhc------------C--CCCCeEEEEEecCC-eEEEEECCCCcccccccCCCCCCCCcceeeeee
Q psy13357 50 LHHLVFEILDNAIDESL------------A--GYCTKINVTIYSDN-SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMT 114 (833)
Q Consensus 50 L~hlv~EIVdNsiDE~~------------a--G~~~~I~V~I~~Dg-sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft 114 (833)
+..+|+|+|.||+|+.. . .....|.|.++.++ .|+|.|||.||+.+..+. +|+
T Consensus 48 ~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~~~i~I~DnG~GMs~edl~~------------~~~ 115 (235)
T 2ior_A 48 KEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVID------------HLG 115 (235)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTTEEEEEECSSCCCHHHHHH------------HHT
T ss_pred HHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCceEEEEEECCCCCCHHHHHH------------HHH
Confidence 56899999999999872 0 22245777777654 799999999999876543 454
Q ss_pred eccccCC--CCC------CcceecCCcccccchhhhhcccceeEEEEeCCe----EEEEEEEcccccccccccccccccC
Q psy13357 115 ELHAGGK--FNK------NSYKISGGLHGIGLSCVNGLSRFLQLTINRNKK----IHYMEFRYGVLQNRIIKTINGISVS 182 (833)
Q Consensus 115 ~LhAGgK--Fdd------~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~Gk----~y~q~f~~G~~~~~~~~~~~~~~~~ 182 (833)
...++++ |.+ ..-...-|..|+|...+-++++.++|.++..+. .|...+..+ ...
T Consensus 116 ~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~------------~~~- 182 (235)
T 2ior_A 116 TIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGE------------GEY- 182 (235)
T ss_dssp TCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSS------------SEE-
T ss_pred HHccccccchhhhhccccccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCC------------CcE-
Confidence 4444443 311 011245689999998888899999999987653 566666544 111
Q ss_pred CceEec-cCCCCccEEEEE--eCccccccccccHHHHHHHHHHhh
Q psy13357 183 PIKIIG-DTNKQGTKIHFW--VDEKIFSNIEFHYEILKKRIRELS 224 (833)
Q Consensus 183 ~l~~~g-~~~~~GT~V~F~--PD~~iF~~~~~~~~~l~~RlrelA 224 (833)
.+.. ....+||+|+.. |+..-| ++...|.+.++.+|
T Consensus 183 --~i~~~~~~~~GT~V~v~Lk~~~~~~----~e~~~i~~lv~~ya 221 (235)
T 2ior_A 183 --TVADITKEDRGTEITLHLREGEDEF----LDDWRVRSIISKYS 221 (235)
T ss_dssp --EEEEECCCSCEEEEEEEECTTCGGG----GCHHHHHHHHHHHT
T ss_pred --EEeeCCCCCCCEEEEEEEcCchhhh----CCHHHHHHHHHHHh
Confidence 1111 235689999876 233223 46788899999998
No 29
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=98.81 E-value=9e-09 Score=108.50 Aligned_cols=160 Identities=19% Similarity=0.223 Sum_probs=104.4
Q ss_pred chhHHHHHHHHHHHhhhcC--------------CCCCeEEEEEecC-CeEEEEECCCCcccccccCCCCCCCCcceeeee
Q psy13357 49 GLHHLVFEILDNAIDESLA--------------GYCTKINVTIYSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVM 113 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~a--------------G~~~~I~V~I~~D-gsIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vf 113 (833)
+....++|+|.||.|+... +..-.|.|.++.+ ..|+|.|||.||+-+.... .|
T Consensus 60 ~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnG~GMt~edl~~------------~l 127 (256)
T 3o0i_A 60 NKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLIN------------NL 127 (256)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHT------------HH
T ss_pred CcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCceEEEEecCCCCcCHHHHHH------------HH
Confidence 4578899999999998632 1123566666653 4899999999999876653 34
Q ss_pred eeccccCC--CCC----CcceecCCcccccchhhhhcccceeEEEEeCC-eEEEEEEEcccccccccccccccccCCceE
Q psy13357 114 TELHAGGK--FNK----NSYKISGGLHGIGLSCVNGLSRFLQLTINRNK-KIHYMEFRYGVLQNRIIKTINGISVSPIKI 186 (833)
Q Consensus 114 t~LhAGgK--Fdd----~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~G-k~y~q~f~~G~~~~~~~~~~~~~~~~~l~~ 186 (833)
++..++++ |.+ +.-..+-|+.|+|...+-++|.+++|.++.++ ..|..+...|.. ..+.+.
T Consensus 128 ~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~~~g~~w~s~gg~~----------~~v~~~-- 195 (256)
T 3o0i_A 128 GTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGS----------FTVRTD-- 195 (256)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTE----------EEEEEC--
T ss_pred HhhccccccchhhhhcccCCccccCCCcchHHHhhccCCeEEEEEcCCCCceEEEEEeccce----------EEEeeC--
Confidence 33333332 211 11246889999999999999999999998755 567777666510 111111
Q ss_pred eccCCCCccEEEEEeCccccccccc-cHHHHHHHHHHhh--ccCCCcEEEEeecc
Q psy13357 187 IGDTNKQGTKIHFWVDEKIFSNIEF-HYEILKKRIRELS--FLNNGVCITLIDER 238 (833)
Q Consensus 187 ~g~~~~~GT~V~F~PD~~iF~~~~~-~~~~l~~RlrelA--~LnpGl~I~l~der 238 (833)
.+....+||+|+... .+...+| +...|.+.++.+| .-+| |++..++
T Consensus 196 ~~~~~~~GT~I~l~L---K~~~~e~~e~~~I~~iv~k~s~~l~~P---I~~~~~~ 244 (256)
T 3o0i_A 196 TGEPMGRGTKVILHL---KEDQTEYLEERRIKEIVKKHSQFIGYP---ITLFVEK 244 (256)
T ss_dssp CSSCCSSEEEEEEEE---CGGGGGGGCHHHHHHHHHHHCTTCSSC---EEECCC-
T ss_pred CCCCCCCCcEEEEEE---cCcchhhccHHHHHHHHHHHHhhCCCC---eEEeeee
Confidence 123457999999882 2332333 5678889999999 4555 5655443
No 30
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=98.80 E-value=1.6e-08 Score=104.41 Aligned_cols=164 Identities=17% Similarity=0.179 Sum_probs=100.0
Q ss_pred chhHHHHHHHHHHHhhhcC------------CCCC--eEEEEEecC-CeEEEEECCCCcccccccCCCCCCCCcceeeee
Q psy13357 49 GLHHLVFEILDNAIDESLA------------GYCT--KINVTIYSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVM 113 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~a------------G~~~--~I~V~I~~D-gsIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vf 113 (833)
+...+++|+|.||+|+... +... .|.|.++.+ ..|+|.|||.||+.+..+. .|
T Consensus 26 ~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~~~i~I~DnG~GMs~edl~~------------~l 93 (220)
T 2wer_A 26 NKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELIN------------NL 93 (220)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSCCCCHHHHHH------------HT
T ss_pred CchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCCCEEEEEEcCCCCCHHHHHH------------HH
Confidence 4478999999999998741 1123 466665543 4799999999999876543 34
Q ss_pred eeccccCC------CCCCcceecCCcccccchhhhhcccceeEEEEeCC-eEEEEEEEcccccccccccccccccCCceE
Q psy13357 114 TELHAGGK------FNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNK-KIHYMEFRYGVLQNRIIKTINGISVSPIKI 186 (833)
Q Consensus 114 t~LhAGgK------Fdd~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~G-k~y~q~f~~G~~~~~~~~~~~~~~~~~l~~ 186 (833)
+...++++ .....-...-|..|+|...+-+++++++|.++..+ ..|..++..|. . ..+.+..
T Consensus 94 ~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~~~~~~~~~~~~~--~--------~~i~~~~- 162 (220)
T 2wer_A 94 GTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGG--S--------FTVTLDE- 162 (220)
T ss_dssp TTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSS--E--------EEEEECS-
T ss_pred HhHhcccchhHHHHhhccCCcccCCccchhHHHhhhcCCeeEEEEecCCCceeEEEeCCCC--c--------eEeeccc-
Confidence 33333332 11111234678899999999999999999998755 34555555441 0 1111100
Q ss_pred eccCCCCccEEEEEeCccccccccccHHHHHHHHHHhhccCCCcEEEEeecc
Q psy13357 187 IGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDER 238 (833)
Q Consensus 187 ~g~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~RlrelA~LnpGl~I~l~der 238 (833)
.+....+||+|+....... ..-++...|.+.++.+|-.. ..-|.++.++
T Consensus 163 ~~~~~~~GT~I~l~Lk~~~--~~~~e~~~i~~~v~~~a~~l-~~PI~~~~~~ 211 (220)
T 2wer_A 163 VNERIGRGTILRLFLKDDQ--LEYLEEKRIKEVIKRHSEFV-AYPIQLVVTK 211 (220)
T ss_dssp SSCCCSSEEEEEEEECTTC--GGGGCHHHHHHHHHHHCTTC-CSCEEECCCC
T ss_pred CCCCCCCCeEEEEEECcch--HHhCCHHHHHHHHHHHHhcC-CCceEEEecc
Confidence 0123568999998732110 01136677888888887322 2346666554
No 31
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=98.77 E-value=6.6e-08 Score=112.28 Aligned_cols=154 Identities=21% Similarity=0.228 Sum_probs=100.8
Q ss_pred chhHHHHHHHHHHHhhhc-------------C-CCCCeEEEEEecCC-eEEEEECCCCcccccccCCCCCCCCcceeeee
Q psy13357 49 GLHHLVFEILDNAIDESL-------------A-GYCTKINVTIYSDN-SISISDNGRGIPIDIKIDDKHKPKRSAAEIVM 113 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~-------------a-G~~~~I~V~I~~Dg-sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vf 113 (833)
.....++|+|.||+|+.. . .....|.|.+++++ .|+|.|||.||+-+.... .|
T Consensus 27 n~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnGiGMt~edl~~------------~l 94 (559)
T 1y4s_A 27 NKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVID------------HL 94 (559)
T ss_dssp GTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTTEEEEEECSSCCCHHHHHH------------HH
T ss_pred ChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCCcEEEEEECCCCCCHHHHHH------------HH
Confidence 357889999999999972 1 22357888888754 899999999999876543 34
Q ss_pred eeccccCC--C----CC--CcceecCCcccccchhhhhcccceeEEEEeCC----eEEEEEEEccccccccccccccccc
Q psy13357 114 TELHAGGK--F----NK--NSYKISGGLHGIGLSCVNGLSRFLQLTINRNK----KIHYMEFRYGVLQNRIIKTINGISV 181 (833)
Q Consensus 114 t~LhAGgK--F----dd--~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~G----k~y~q~f~~G~~~~~~~~~~~~~~~ 181 (833)
++..++|+ | .+ ..-..+-|+.|+|...+-+++.+++|.++..| ..|..+...|. . ..+
T Consensus 95 ~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~--~--------~~i 164 (559)
T 1y4s_A 95 GTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEG--E--------YTV 164 (559)
T ss_dssp SCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSS--E--------EEE
T ss_pred hhhcccccHHHHHHhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCC--e--------eEE
Confidence 44333332 2 11 01234679999999999999999999998765 25665554441 0 111
Q ss_pred CCceEeccCCCCccEEEEEeCcccccccc-ccHHHHHHHHHHhh--ccCCCcEE
Q psy13357 182 SPIKIIGDTNKQGTKIHFWVDEKIFSNIE-FHYEILKKRIRELS--FLNNGVCI 232 (833)
Q Consensus 182 ~~l~~~g~~~~~GT~V~F~PD~~iF~~~~-~~~~~l~~RlrelA--~LnpGl~I 232 (833)
.+ . ....+||+|+...... ..+ ++...|.+.++..| .-+| +.+
T Consensus 165 ~~---~-~~~~~GT~I~L~Lk~d---~~Efle~~~I~~iv~kys~fi~~P-I~~ 210 (559)
T 1y4s_A 165 AD---I-TKEDRGTEITLHLREG---EDEFLDDWRVRSIISKYSDHIALP-VEI 210 (559)
T ss_dssp EE---E-CCCSCEEEEEEEECTT---CGGGSCHHHHHHHHHHHHTTCSSC-EEE
T ss_pred eE---C-CCCCCCeEEEEEEcch---hhhcchHHHHHHHHHHHhccCCCc-eEE
Confidence 11 1 1347899999873221 112 24678888888888 5567 655
No 32
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=98.69 E-value=2.7e-08 Score=105.67 Aligned_cols=161 Identities=18% Similarity=0.258 Sum_probs=101.3
Q ss_pred chhHHHHHHHHHHHhhhcC------------CCCCeEEEEE--ecC-CeEEEEECCCCcccccccCCCCCCCCcceeeee
Q psy13357 49 GLHHLVFEILDNAIDESLA------------GYCTKINVTI--YSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVM 113 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~a------------G~~~~I~V~I--~~D-gsIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vf 113 (833)
.....|+|+|.||+|+.-. +..+.|.|.| +.+ ..|+|.|||.||+.+..+. .|
T Consensus 68 ~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG~GMs~edL~~------------~l 135 (264)
T 1yc1_A 68 NKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLIN------------NL 135 (264)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH------------HH
T ss_pred CHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECCcCCCHHHHHH------------HH
Confidence 3578999999999998741 1124555555 433 4799999999999876543 44
Q ss_pred eeccccCC--C----CCCcceecCCcccccchhhhhcccceeEEEEeCC-eEEEEEEEcccccccccccccccccCCceE
Q psy13357 114 TELHAGGK--F----NKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNK-KIHYMEFRYGVLQNRIIKTINGISVSPIKI 186 (833)
Q Consensus 114 t~LhAGgK--F----dd~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~G-k~y~q~f~~G~~~~~~~~~~~~~~~~~l~~ 186 (833)
+..-++++ | ....-...-|..|+|...+-+++..++|.++..+ ..|..+...|. . ..+.+.
T Consensus 136 ~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~w~~~~~~--~--------~~i~~~-- 203 (264)
T 1yc1_A 136 GTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGG--S--------FTVRTD-- 203 (264)
T ss_dssp HSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHEEEEEEEEECTTSCCEEEEECSTT--E--------EEEEEC--
T ss_pred HhhccccchhhhhhhccccchhhcCCCCCCccccccCCCEEEEEEecCCCceEEEEEcCCc--e--------EEEeec--
Confidence 44333332 1 0011134678999999999999999999998755 34555554441 0 111111
Q ss_pred eccCCCCccEEEEEe--CccccccccccHHHHHHHHHHhhccCCCcEEEEeecc
Q psy13357 187 IGDTNKQGTKIHFWV--DEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDER 238 (833)
Q Consensus 187 ~g~~~~~GT~V~F~P--D~~iF~~~~~~~~~l~~RlrelA~LnpGl~I~l~der 238 (833)
.+....+||+|+... |..-| ++...|.+.++.+|-.. ..-|++++++
T Consensus 204 ~~~~~~~GT~I~l~Lk~~~~e~----~e~~~i~~lv~k~s~fi-~~PI~~~~~~ 252 (264)
T 1yc1_A 204 TGEPMGRGTKVILHLKEDQTEY----LEERRIKEIVKKHSQFI-GYPITLFVEK 252 (264)
T ss_dssp CSSCCSSEEEEEEEECGGGGGG----GSHHHHHHHHHHHTTTC-SSCEEECCCC
T ss_pred CCCCCCCCeEEEEEECCchhhh----hhHHHHHHHHHHHHhhC-CCCEEEeecc
Confidence 112357899999873 22222 46778888888888433 2457777765
No 33
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=98.68 E-value=8.7e-08 Score=112.56 Aligned_cols=154 Identities=21% Similarity=0.228 Sum_probs=99.1
Q ss_pred chhHHHHHHHHHHHhhhc-------------C-CCCCeEEEEEecCC-eEEEEECCCCcccccccCCCCCCCCcceeeee
Q psy13357 49 GLHHLVFEILDNAIDESL-------------A-GYCTKINVTIYSDN-SISISDNGRGIPIDIKIDDKHKPKRSAAEIVM 113 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~-------------a-G~~~~I~V~I~~Dg-sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vf 113 (833)
.....++|+|.||+|+.. . .....|.|.+++++ .|+|.|||.||+-+.... .|
T Consensus 27 n~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGiGMt~edl~~------------~l 94 (624)
T 2ioq_A 27 NKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVID------------HL 94 (624)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH------------HH
T ss_pred ChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCCcEEEEEECCCCCCHHHHHH------------HH
Confidence 357889999999999971 1 12246888888754 799999999999876543 34
Q ss_pred eeccccCC--C----CC--CcceecCCcccccchhhhhcccceeEEEEeCC----eEEEEEEEccccccccccccccccc
Q psy13357 114 TELHAGGK--F----NK--NSYKISGGLHGIGLSCVNGLSRFLQLTINRNK----KIHYMEFRYGVLQNRIIKTINGISV 181 (833)
Q Consensus 114 t~LhAGgK--F----dd--~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~G----k~y~q~f~~G~~~~~~~~~~~~~~~ 181 (833)
++...+++ | .+ ..-..+-|+.|+|...+-++|.+++|.++..| ..|..+...|. . ..+
T Consensus 95 ~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~--~--------~~i 164 (624)
T 2ioq_A 95 GTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEG--E--------YTV 164 (624)
T ss_dssp HHHCC---------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSS--C--------CEE
T ss_pred HhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCC--e--------EEE
Confidence 44333332 2 11 01134679999999999999999999998765 25655554441 0 111
Q ss_pred CCceEeccCCCCccEEEEEeCcccccccc-ccHHHHHHHHHHhh--ccCCCcEE
Q psy13357 182 SPIKIIGDTNKQGTKIHFWVDEKIFSNIE-FHYEILKKRIRELS--FLNNGVCI 232 (833)
Q Consensus 182 ~~l~~~g~~~~~GT~V~F~PD~~iF~~~~-~~~~~l~~RlrelA--~LnpGl~I 232 (833)
.+ . ....+||+|+...... ..+ ++...|.+.++..| .-+| +.+
T Consensus 165 ~~---~-~~~~~GT~I~L~Lk~d---~~Efl~~~~i~~ivkkys~fi~~P-I~~ 210 (624)
T 2ioq_A 165 AD---I-TKEDRGTEITLHLREG---EDEFLDDWRVRSIISKYSDHIALP-VEI 210 (624)
T ss_dssp EE---E-CCSSSEEEEEEEECTT---CGGGGCHHHHHHHHHHHHTTCSSC-EEE
T ss_pred EE---C-CCCCCCeEEEEEEcch---hhhcchHHHHHHHHHHHhccCCCc-eEE
Confidence 11 1 1347899999873221 112 34677888888888 5567 555
No 34
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=98.68 E-value=4.9e-08 Score=102.03 Aligned_cols=163 Identities=17% Similarity=0.207 Sum_probs=98.3
Q ss_pred chhHHHHHHHHHHHhhhc--------------CCCCCeEEEEEecCC-eEEEEECCCCcccccccCCCCCCCCcceeeee
Q psy13357 49 GLHHLVFEILDNAIDESL--------------AGYCTKINVTIYSDN-SISISDNGRGIPIDIKIDDKHKPKRSAAEIVM 113 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~--------------aG~~~~I~V~I~~Dg-sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vf 113 (833)
+....++|+|.||+|+.- .+....|.|.++.++ .|+|.|||.||+.+..+. .|
T Consensus 32 ~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~i~I~DnG~GMt~edl~~------------~l 99 (236)
T 2gqp_A 32 NKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVK------------NL 99 (236)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH------------HH
T ss_pred CchHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCCCEEEEEECCcCCCHHHHHH------------HH
Confidence 467899999999999863 112246777777654 799999999999876543 34
Q ss_pred eeccccCC--C----CCC-----cceecCCcccccchhhhhcccceeEEEEeCC-eEEEEEEEccccccccccccccccc
Q psy13357 114 TELHAGGK--F----NKN-----SYKISGGLHGIGLSCVNGLSRFLQLTINRNK-KIHYMEFRYGVLQNRIIKTINGISV 181 (833)
Q Consensus 114 t~LhAGgK--F----dd~-----~ykvSgGlhGvG~svvNAlS~~~~Vev~r~G-k~y~q~f~~G~~~~~~~~~~~~~~~ 181 (833)
++.-.+|+ | ... .-...-|..|+|...+-.++..++|.++..+ ..|..+...|. ..+
T Consensus 100 ~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va~~v~V~Sr~~~~~~~~w~~~gg~-----------~~i 168 (236)
T 2gqp_A 100 GTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNE-----------FSV 168 (236)
T ss_dssp HCC---------------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEESSSC-----------EEE
T ss_pred hhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcCCEEEEEEeCCCCceEEEEEeCCE-----------EEE
Confidence 33333332 2 110 1123558899999999999999999998754 33444333331 111
Q ss_pred CCceEeccCCCCccEEEEEeCccccccccccHHHHHHHHHHhhccCCCcEEEEeecc
Q psy13357 182 SPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDER 238 (833)
Q Consensus 182 ~~l~~~g~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~RlrelA~LnpGl~I~l~der 238 (833)
.+.. .+....+||+|+....... ..-++...|.+.++.+|-.. ...|.+.+++
T Consensus 169 ~~~~-~~~~~~~GT~I~l~Lk~~~--~~~le~~~i~~lv~~~s~~i-~~pI~~~~~~ 221 (236)
T 2gqp_A 169 IADP-RGNTLGRGTTITLVLKEEA--SDYLELDTIKNLVKKYSQFI-NFPIYVWSSK 221 (236)
T ss_dssp EECT-TCSCSSSEEEEEEEECGGG--GGGGCHHHHHHHHHHHHTTC-SSCEEEEEEC
T ss_pred Eecc-CCCCCCCCeEEEEEECCcc--hhhChHHHHHHHHHHHhhhC-CCceEEeeee
Confidence 1100 0123468999998732211 11136677888888877433 2457776665
No 35
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=98.54 E-value=2.3e-07 Score=96.92 Aligned_cols=172 Identities=22% Similarity=0.277 Sum_probs=100.9
Q ss_pred chhHHHHHHHHHHHhhhcC--------------CCCCeEEEEEecC-CeEEEEECCCCcccccccCCCCCCCCcceeeee
Q psy13357 49 GLHHLVFEILDNAIDESLA--------------GYCTKINVTIYSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVM 113 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~a--------------G~~~~I~V~I~~D-gsIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vf 113 (833)
.....++|+|.||.|+... +.--.|.|..+++ ..|+|.|||.||+-+.... .+
T Consensus 39 ~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~edL~~------------~L 106 (239)
T 3nmq_A 39 NKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLIN------------NL 106 (239)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHT------------HH
T ss_pred CcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCCccEEEEEeCCCCCCHHHHHH------------HH
Confidence 4578899999999998631 1223577777764 4899999999999876543 23
Q ss_pred eeccccC-C-C----CCCcceecCCcccccchhhhhcccceeEEEEeCC-eEEEEEEEcccccccccccccccccCCceE
Q psy13357 114 TELHAGG-K-F----NKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNK-KIHYMEFRYGVLQNRIIKTINGISVSPIKI 186 (833)
Q Consensus 114 t~LhAGg-K-F----dd~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~G-k~y~q~f~~G~~~~~~~~~~~~~~~~~l~~ 186 (833)
+++-.+| + | ..+.-...-|+.|||...+=.+|..++|.+++++ ..|..+...|. . -.+.+.
T Consensus 107 gtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~~~~~~W~s~~~g--~--------fti~~~-- 174 (239)
T 3nmq_A 107 GTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGG--S--------FTVRAD-- 174 (239)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSTT--E--------EEEEEC--
T ss_pred HHHhcccchhhhhhhcccCCcccccccCcccccccccCCEEEEEEeeCCCceeEEEECCCC--c--------EEEEec--
Confidence 3332222 2 1 0111135679999999999999999999998754 44554433330 0 111111
Q ss_pred eccCCCCccEEEEEeC--ccccccccccHHHHHHHHHHhh-ccCCCcEEEEeecccceEEEEEeCCC
Q psy13357 187 IGDTNKQGTKIHFWVD--EKIFSNIEFHYEILKKRIRELS-FLNNGVCITLIDERIKKKEIFEFKGG 250 (833)
Q Consensus 187 ~g~~~~~GT~V~F~PD--~~iF~~~~~~~~~l~~RlrelA-~LnpGl~I~l~der~~~~~~f~~~~G 250 (833)
.+....+||+|+.... ..-| ++...|.+.++..+ |+ +.-|.+.-++...++.|..+-|
T Consensus 175 ~~~~~~~GT~I~L~lk~d~~e~----l~~~~i~~lv~kys~fi--~~pI~~~~~~~~~~~~~~~~~~ 235 (239)
T 3nmq_A 175 HGEPIGRGTKVILHLKEDQTEY----LEERRVKEVVKKHSQFI--GYPITLYLEKEREKGEFNSKLG 235 (239)
T ss_dssp CSSCCSSEEEEEEEECGGGGGG----GSHHHHHHHHHHHCTTC--SSCEEECCCSCC----------
T ss_pred CCCcCCCCCEEEEEECCChHHh----cCHHHHHHHHHHHHhcc--CCceEEeeeeeccHHHhhhccc
Confidence 1233479999998743 3223 35566777777666 33 3447776666544556655433
No 36
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=98.40 E-value=2.8e-07 Score=98.08 Aligned_cols=163 Identities=18% Similarity=0.208 Sum_probs=96.2
Q ss_pred chhHHHHHHHHHHHhhhc--------------CCCCCeEEEEEecC-CeEEEEECCCCcccccccCCCCCCCCcceeeee
Q psy13357 49 GLHHLVFEILDNAIDESL--------------AGYCTKINVTIYSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVM 113 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~--------------aG~~~~I~V~I~~D-gsIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vf 113 (833)
+....++|+|.||+|+.- .+..-.|.|.++.+ ..|+|.|||.||+-+.... .|
T Consensus 28 n~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~I~DnGiGMt~edl~~------------~l 95 (269)
T 1qy5_A 28 NKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVK------------NL 95 (269)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH------------HH
T ss_pred CchHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCceEEEEEECCCCCCHHHHHH------------Hh
Confidence 346789999999999863 12224577777654 4899999999999876543 34
Q ss_pred eec-cccCC-CCC----C-----cceecCCcccccchhhhhcccceeEEEEeCC-eEEEEEEEccccccccccccccccc
Q psy13357 114 TEL-HAGGK-FNK----N-----SYKISGGLHGIGLSCVNGLSRFLQLTINRNK-KIHYMEFRYGVLQNRIIKTINGISV 181 (833)
Q Consensus 114 t~L-hAGgK-Fdd----~-----~ykvSgGlhGvG~svvNAlS~~~~Vev~r~G-k~y~q~f~~G~~~~~~~~~~~~~~~ 181 (833)
+++ ++|.+ |-. . .-...-|..|+|...+-.+|..++|.++..+ ..|......|. ..+
T Consensus 96 ~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~~~~~~w~s~gg~-----------~~i 164 (269)
T 1qy5_A 96 GTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNE-----------FSV 164 (269)
T ss_dssp HSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSC-----------EEE
T ss_pred hhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhccceEEEEEEecCCcEEEEEEeCCE-----------EEE
Confidence 333 33332 200 0 1122358999999999999999999998754 33443333331 111
Q ss_pred CCceEeccCCCCccEEEEEeCccccccccccHHHHHHHHHHhhccCCCcEEEEeecc
Q psy13357 182 SPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDER 238 (833)
Q Consensus 182 ~~l~~~g~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~RlrelA~LnpGl~I~l~der 238 (833)
.+.. .+....+||+|+......- ..-++...|.+.++..+-.. +.-|.|..++
T Consensus 165 ~~~~-~~~~~~~GT~I~L~Lk~d~--~e~le~~~i~~lvkkys~fi-~~PI~l~~~k 217 (269)
T 1qy5_A 165 IADP-RGNTLGRGTTITLVLKEEA--SDYLELDTIKNLVKKYSQFI-NFPIYVWSSK 217 (269)
T ss_dssp EECT-TCSCSSSEEEEEEEECGGG--GGGGSHHHHHHHHHTTCTTC-SSCEEEEEEC
T ss_pred Eecc-CCCcCCCCeEEEEEEcccc--hhhhhHHHHHHHHHhhhccc-ceeeEEeeee
Confidence 1100 0123468999998732210 11235666777777666222 2346666554
No 37
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=98.38 E-value=2.3e-06 Score=91.22 Aligned_cols=163 Identities=21% Similarity=0.229 Sum_probs=100.4
Q ss_pred chhHHHHHHHHHHHhhhcC--------------CCCCeEEEEEecC-CeEEEEECCCCcccccccCCCCCCCCcceeeee
Q psy13357 49 GLHHLVFEILDNAIDESLA--------------GYCTKINVTIYSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVM 113 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~a--------------G~~~~I~V~I~~D-gsIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vf 113 (833)
+....++|+|.||.|+... +..-.|.|.++++ +.|+|.|||.||+-+.... .|
T Consensus 46 n~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~~tLtI~DNGiGMt~edL~~------------~L 113 (281)
T 3peh_A 46 QKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKVDLIN------------NL 113 (281)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH------------HH
T ss_pred ChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCCcEEEEEeCCCCCCHHHHHH------------HH
Confidence 3467789999999999731 1234677777764 4899999999999776543 34
Q ss_pred eeccccCC--C----CC-CcceecCCcccccchhhhhcccceeEEEEeCC-eEEEEEEEcccccccccccccccccCCce
Q psy13357 114 TELHAGGK--F----NK-NSYKISGGLHGIGLSCVNGLSRFLQLTINRNK-KIHYMEFRYGVLQNRIIKTINGISVSPIK 185 (833)
Q Consensus 114 t~LhAGgK--F----dd-~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~G-k~y~q~f~~G~~~~~~~~~~~~~~~~~l~ 185 (833)
+++-.+|+ | .. ..-...-|+.|||...+=+++..++|.++..+ ..|......|. . -.+.+.
T Consensus 114 gtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~vadkV~V~Sk~~~~~~~~Wes~g~g--~--------fti~~~- 182 (281)
T 3peh_A 114 GTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNDDEQYIWESTADA--K--------FTIYKD- 182 (281)
T ss_dssp HHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGGTEEEEEEEEECTTSCCEEEEEETTS--C--------EEEEEC-
T ss_pred HHHHhHhhhhHHHhhhccccccccccccCccchhhccccCEEEEEEecCCCCEEEEEECCCc--c--------EEEEEc-
Confidence 44433332 1 00 01124679999999999999999999998755 45655554441 0 111110
Q ss_pred EeccCCCCccEEEEEeCccccccccccHHHHHHHHHHhh-ccCCCcEEEEeecc
Q psy13357 186 IIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELS-FLNNGVCITLIDER 238 (833)
Q Consensus 186 ~~g~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~RlrelA-~LnpGl~I~l~der 238 (833)
..+....+||+|+......- ..-++...|.+.++..+ |+. .-|.|..++
T Consensus 183 ~~~~~~~~GT~I~L~Lked~--~e~le~~~ik~ivkkys~fi~--~pI~l~~~k 232 (281)
T 3peh_A 183 PRGATLKRGTRISLHLKEDA--TNLLNDKKLMDLISKYSQFIQ--FPIYLLHEN 232 (281)
T ss_dssp TTCSTTSSEEEEEEEECGGG--GGGGSHHHHHHHHHHHTTTCC--SCEEEEEEE
T ss_pred CCCCCCCCCeEEEEEECCch--hhhcCHHHHHHHHHHhhccCC--cceEEeeee
Confidence 00223578999998743221 11235667777777666 443 446666554
No 38
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=98.30 E-value=3.6e-06 Score=99.49 Aligned_cols=156 Identities=19% Similarity=0.225 Sum_probs=97.8
Q ss_pred hhHHHHHHHHHHHhhhc--------------CCCCCeEEEEEecCC-eEEEEECCCCcccccccCCCCCCCCcceeeeee
Q psy13357 50 LHHLVFEILDNAIDESL--------------AGYCTKINVTIYSDN-SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMT 114 (833)
Q Consensus 50 L~hlv~EIVdNsiDE~~--------------aG~~~~I~V~I~~Dg-sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft 114 (833)
....++|+|.||+|+.- .+....|.|.++.++ .|+|.|||.||+-+.... .|+
T Consensus 27 keifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~~~I~I~DnGiGMt~edl~~------------~l~ 94 (677)
T 2cg9_A 27 KEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELIN------------NLG 94 (677)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGTEEEEEECSCCCCHHHHHG------------GGS
T ss_pred chHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCCCEEEEEECCCCCCHHHHHH------------HHH
Confidence 46789999999999972 112346888887754 899999999999876543 333
Q ss_pred ec-cccC-----CCCCCcceecCCcccccchhhhhcccceeEEEEeCCe-EEEEEEEcccccccccccccccccCCceEe
Q psy13357 115 EL-HAGG-----KFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKK-IHYMEFRYGVLQNRIIKTINGISVSPIKII 187 (833)
Q Consensus 115 ~L-hAGg-----KFdd~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~Gk-~y~q~f~~G~~~~~~~~~~~~~~~~~l~~~ 187 (833)
+. .+|. |+.+..-....|..|||...+=+++.+++|.+++.|. .|......|. . ..+.+. ..
T Consensus 95 tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~~~~~W~s~g~~--~--------~ti~~~-~~ 163 (677)
T 2cg9_A 95 TIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGG--S--------FTVTLD-EV 163 (677)
T ss_dssp SSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSSS--E--------EEEEEC-CS
T ss_pred hHhccccHHHHHhhhcccchhhcCCCCchhHHHhhcCcEEEEEEccCCCceEEEEEcCCc--e--------EEEeec-CC
Confidence 33 2332 2221112346799999999888899999999987663 4555444441 0 111110 01
Q ss_pred ccCCCCccEEEEEe--CccccccccccHHHHHHHHHHhh-ccCCCcEEEE
Q psy13357 188 GDTNKQGTKIHFWV--DEKIFSNIEFHYEILKKRIRELS-FLNNGVCITL 234 (833)
Q Consensus 188 g~~~~~GT~V~F~P--D~~iF~~~~~~~~~l~~RlrelA-~LnpGl~I~l 234 (833)
+....+||+|+... |..-| ++...|.+.++..| |+ +.-|.+
T Consensus 164 ~~~~~~GT~I~L~Lk~d~~e~----l~~~~i~~lvkkys~fi--~~PI~l 207 (677)
T 2cg9_A 164 NERIGRGTILRLFLKDDQLEY----LEEKRIKEVIKRHSEFV--AYPIQL 207 (677)
T ss_dssp SCCCSSEEEEEEEECTTGGGG----GCHHHHHHHHHHHSTTC--SSCEEE
T ss_pred CCCCCCCeEEEEEEcchhhcc----ccHHHHHHHHHHHHhhC--CCCeEE
Confidence 23457899999873 22212 35667777777776 44 334555
No 39
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=98.23 E-value=3.8e-06 Score=99.17 Aligned_cols=157 Identities=17% Similarity=0.204 Sum_probs=88.9
Q ss_pred chhHHHHHHHHHHHhhhc-------C-------CCCCeEEEEEecCC-eEEEEECCCCcccccccCCCCCCCCcceeeee
Q psy13357 49 GLHHLVFEILDNAIDESL-------A-------GYCTKINVTIYSDN-SISISDNGRGIPIDIKIDDKHKPKRSAAEIVM 113 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~-------a-------G~~~~I~V~I~~Dg-sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vf 113 (833)
.....++|+|.||+|+.. . .....|.|.++.++ .|+|.|||.||+-+.... .|
T Consensus 45 n~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGiGMt~edl~~------------~l 112 (666)
T 2o1u_A 45 NKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVK------------NL 112 (666)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH------------HT
T ss_pred CchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCCCEEEEEECCCCCCHHHHHH------------HH
Confidence 346789999999999972 0 12246888887754 799999999999876543 23
Q ss_pred eecccc-CC-C----CCC-----cceecCCcccccchhhhhcccceeEEEEeCC-eEEEEEEEccccccccccccccccc
Q psy13357 114 TELHAG-GK-F----NKN-----SYKISGGLHGIGLSCVNGLSRFLQLTINRNK-KIHYMEFRYGVLQNRIIKTINGISV 181 (833)
Q Consensus 114 t~LhAG-gK-F----dd~-----~ykvSgGlhGvG~svvNAlS~~~~Vev~r~G-k~y~q~f~~G~~~~~~~~~~~~~~~ 181 (833)
++.-.+ .+ | .+. .-...-|..|||...+=+++.+++|.++..| ..|......|. ..+
T Consensus 113 ~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~~~~~~W~s~gg~-----------~ti 181 (666)
T 2o1u_A 113 GTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNE-----------FSV 181 (666)
T ss_dssp TC-------------------------------CTTGGGGGTEEEEEEEEECTTSCCEEEEESSSC-----------CEE
T ss_pred hhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCCCceEEEEEeCCe-----------EEE
Confidence 332222 22 2 111 1123568999999999999999999998755 33443333331 111
Q ss_pred CCceEeccCCCCccEEEEEe--CccccccccccHHHHHHHHHHhh--ccCCCcEEEEee
Q psy13357 182 SPIKIIGDTNKQGTKIHFWV--DEKIFSNIEFHYEILKKRIRELS--FLNNGVCITLID 236 (833)
Q Consensus 182 ~~l~~~g~~~~~GT~V~F~P--D~~iF~~~~~~~~~l~~RlrelA--~LnpGl~I~l~d 236 (833)
.+.. .+....+||+|+... |..-| ++...|.+.++..| .-+| |.|..
T Consensus 182 ~~~~-~~~~~~~GT~I~L~Lk~d~~Ef----le~~~I~~ivkkys~fi~~P---I~~~~ 232 (666)
T 2o1u_A 182 IADP-RGNTLGRGTTITLVLKEEASDY----LELDTIKNLVKKYSQFINFP---IYVWS 232 (666)
T ss_dssp EECT-TCCSSSSEEEEEEEECTTTTTS----SSTTHHHHHHHHHSTTCCSC---EEEEE
T ss_pred Eecc-cCCCCCCCeEEEEEEccchhhh----ccHHHHHHHHHHHHhhCCCc---eEEec
Confidence 1100 011346899999873 22222 24567788888888 5556 55543
No 40
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=97.91 E-value=2.5e-05 Score=82.04 Aligned_cols=127 Identities=21% Similarity=0.254 Sum_probs=76.8
Q ss_pred eEEEEEecC-CeEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccC-C-CC----CC-cceecCCcccccchhhhh
Q psy13357 72 KINVTIYSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGG-K-FN----KN-SYKISGGLHGIGLSCVNG 143 (833)
Q Consensus 72 ~I~V~I~~D-gsIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGg-K-Fd----d~-~ykvSgGlhGvG~svvNA 143 (833)
.|.|.++++ +.|+|.|||.||+-+.... .|+++-.+| + |- .. .-...-|+.|||...+=.
T Consensus 120 ~I~I~~Dk~~~tLtI~DNGiGMTkeeL~~------------~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFm 187 (272)
T 3ied_A 120 IIKIKPDKEKKTLTITDNGIGMDKSELIN------------NLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFL 187 (272)
T ss_dssp CEEEEEETTTTEEEEEECSCCCCHHHHHH------------HTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGG
T ss_pred EEEEEEeCCCCEEEEEeCCCCCCHHHHHH------------HHHHHhhcchhhHHHHhhcccccccccCcccceeheeec
Confidence 588888875 4899999999999876653 333333332 1 20 00 112346999999999999
Q ss_pred cccceeEEEEeCCeEEEEEEEcccccccccccccccccCCce----EeccCCCCccEEEEEeC--ccccccccccHHHHH
Q psy13357 144 LSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIK----IIGDTNKQGTKIHFWVD--EKIFSNIEFHYEILK 217 (833)
Q Consensus 144 lS~~~~Vev~r~Gk~y~q~f~~G~~~~~~~~~~~~~~~~~l~----~~g~~~~~GT~V~F~PD--~~iF~~~~~~~~~l~ 217 (833)
++..++|.++.++..|..+-..+ +.+ .+.+.. ..+....+||+|..... ..-| ++...|.
T Consensus 188 VAdkV~V~Sk~dd~~~~WeS~g~--gsf--------ti~~~~~~~~~~g~~~~~GT~I~L~Lked~~e~----le~~~ik 253 (272)
T 3ied_A 188 VSNRVEVYTKKEDQIYRWSSDLK--GSF--------SVNEIKKYDQEYDDIKGSGTKIILHLKEECDEY----LEDYKLK 253 (272)
T ss_dssp TEEEEEEEEESSSCEEEEEECSS--SEE--------EEEECTTCTTCC--CCSSEEEEEEEECGGGGGG----GSHHHHH
T ss_pred cCCEEEEEEcCCCceEEEEECCC--CCE--------EEEECcccccccCCCCCCCcEEEEEECCChHHh----cCHHHHH
Confidence 99999999986666676665443 111 111110 01223578999997743 3223 2445566
Q ss_pred HHHHHhh
Q psy13357 218 KRIRELS 224 (833)
Q Consensus 218 ~RlrelA 224 (833)
+.++..+
T Consensus 254 ~likkys 260 (272)
T 3ied_A 254 ELIKKYS 260 (272)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 6666554
No 41
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.82 E-value=3.1e-05 Score=73.10 Aligned_cols=83 Identities=17% Similarity=0.280 Sum_probs=54.9
Q ss_pred chhHHHHHHHHHHHhhhcCCC-CCeEEEEEecC-C--eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGY-CTKINVTIYSD-N--SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNK 124 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~-~~~I~V~I~~D-g--sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd 124 (833)
-+..++.|+|+||+..+..+. ...|.|.+..+ + .|+|.|||.||| . .+. +|.....+..
T Consensus 39 ~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~g~~-~-~~~------------~~~~~~~~~~--- 101 (145)
T 1th8_A 39 EIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIP-D-IEE------------ARQPLFTTKP--- 101 (145)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEECSSCCS-C-HHH------------HTCCC--------
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeCCEEEEEEEECCCCcC-h-HHH------------hhcccccCCC---
Confidence 578889999999999886532 46788887653 3 589999999999 3 221 3322222111
Q ss_pred CcceecCCcccccchhhhhcccceeEEEE
Q psy13357 125 NSYKISGGLHGIGLSCVNGLSRFLQLTIN 153 (833)
Q Consensus 125 ~~ykvSgGlhGvG~svvNAlS~~~~Vev~ 153 (833)
..+-+|+|++++..+.+.+.++..
T Consensus 102 -----~~~~~GlGL~iv~~~~~~i~~~~~ 125 (145)
T 1th8_A 102 -----ELERSGMGFTIMENFMDEVIVESE 125 (145)
T ss_dssp -------CCCSCHHHHHHHHSSEEEEEEE
T ss_pred -----CCCCCcchHHHHHHHHheEEEEeC
Confidence 223479999999999985555443
No 42
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.57 E-value=0.00024 Score=66.71 Aligned_cols=77 Identities=18% Similarity=0.305 Sum_probs=55.2
Q ss_pred CchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCC
Q psy13357 48 TGLHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNK 124 (833)
Q Consensus 48 ~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd 124 (833)
.-|..++.++|+||+..+.. .|.|.+..++ .|+|.|||+|||.+..+. +|.....+.
T Consensus 43 ~~l~~il~nLl~NAi~~~~~----~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~------------~f~~~~~~~---- 102 (152)
T 1id0_A 43 NDFVEVMGNVLDNACKYCLE----FVEISARQTDEHLYIVVEDDGPGIPLSKREV------------IFDRGQRVD---- 102 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCSS----EEEEEEEECSSCEEEEEEESSSCCCGGGTTG------------GGSCCCCTT----
T ss_pred HHHHHHHHHHHHHHHHhCcC----eEEEEEEecCCEEEEEEEeCCCCcCHHHHHH------------Hhccceecc----
Confidence 45889999999999998632 7888887644 599999999999876543 443222211
Q ss_pred CcceecCCcccccchhhhhcccce
Q psy13357 125 NSYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 125 ~~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
.+.+-+|+|++++..+.+.+
T Consensus 103 ----~~~~g~GlGL~i~~~~~~~~ 122 (152)
T 1id0_A 103 ----TLRPGQGVGLAVAREITEQY 122 (152)
T ss_dssp ----CCCTTCCSCHHHHHHHHHHT
T ss_pred ----CCCCCcccCHHHHHHHHHHc
Confidence 11244899999999888765
No 43
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.55 E-value=8.9e-05 Score=73.75 Aligned_cols=78 Identities=27% Similarity=0.353 Sum_probs=42.4
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecCCeEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCCcce
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYK 128 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~DgsIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~yk 128 (833)
-|..++.++|+||+..+.. ...|.|.+..++ |+|.|||.|||.+..+. +|.....+.+
T Consensus 117 ~l~~il~nLl~NAi~~~~~--~~~i~i~~~~~~-i~V~D~G~Gi~~~~~~~------------if~~f~~~~~------- 174 (222)
T 3jz3_A 117 LLSLLVRNLLDNAVRYSPQ--GSVVDVTLNADN-FIVRDNGPGVTPEALAR------------IGERFYRPPG------- 174 (222)
T ss_dssp HHHHHHHHHHHHHHHTCCT--TCEEEEEECSSE-EEEECSCC--------------------------------------
T ss_pred HHHHHHHHHHHHHHHcCCC--CCeEEEEEccCe-EEEEECCCCCCHHHHHH------------HHhhhccCCC-------
Confidence 4778888999999987643 356888888766 99999999999876653 5544333211
Q ss_pred ecCCcccccchhhhhcccce
Q psy13357 129 ISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 129 vSgGlhGvG~svvNAlS~~~ 148 (833)
...+-+|+|+++|..+.+.+
T Consensus 175 ~~~~g~GlGL~i~~~i~~~~ 194 (222)
T 3jz3_A 175 QTATGSGLGLSIVQRIAKLH 194 (222)
T ss_dssp -------CTHHHHHHHHHHT
T ss_pred CCCCcccccHHHHHHHHHHc
Confidence 11223799999999888655
No 44
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.53 E-value=0.0002 Score=67.03 Aligned_cols=75 Identities=21% Similarity=0.355 Sum_probs=53.0
Q ss_pred CchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCC
Q psy13357 48 TGLHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNK 124 (833)
Q Consensus 48 ~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd 124 (833)
.-|..++.++++||+..+.. ...|.|.+..++ .|+|.|||.|||.+..+. +|.....
T Consensus 46 ~~l~~il~nll~NAi~~~~~--~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~------------~f~~~~~------ 105 (152)
T 3a0y_A 46 TRIKQVLINLVQNAIEATGE--NGKIKITSEDMYTKVRVSVWNSGPPIPEELKEK------------IFSPFFT------ 105 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHCT--TCEEEEEEEECSSEEEEEEEEESCCCCGGGTTG------------GGSTTCC------
T ss_pred HHHHHHHHHHHHHHHHhcCC--CCEEEEEEEecCCEEEEEEEeCCCCcCHHHHHh------------Hhhhhcc------
Confidence 35888999999999988733 357888887654 589999999999875543 3422211
Q ss_pred CcceecCCcccccchhhhhccc
Q psy13357 125 NSYKISGGLHGIGLSCVNGLSR 146 (833)
Q Consensus 125 ~~ykvSgGlhGvG~svvNAlS~ 146 (833)
...+-+|+|++.|..+.+
T Consensus 106 ----~~~~g~GlGL~i~~~~~~ 123 (152)
T 3a0y_A 106 ----TKTQGTGLGLSICRKIIE 123 (152)
T ss_dssp ----CC--CCCCSHHHHHHHHH
T ss_pred ----CCCCCCCcCHHHHHHHHH
Confidence 112348999999988776
No 45
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.51 E-value=0.0002 Score=68.35 Aligned_cols=79 Identities=18% Similarity=0.211 Sum_probs=55.8
Q ss_pred CchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCC
Q psy13357 48 TGLHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNK 124 (833)
Q Consensus 48 ~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd 124 (833)
.-|..++.++|+||+..+ ...|.|.+..++ .|+|.|||.|||.+..+. +|.....+.+-
T Consensus 46 ~~l~~il~nll~NAik~~----~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~~------------~f~~f~~~~~~-- 107 (161)
T 1bxd_A 46 LSIKRAVANMVVNAARYG----NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKH------------LFQPFVRGDSA-- 107 (161)
T ss_dssp HHHHHHHHHHHHHHHTTC----CSCEEEEEEEETTEEEEEEEEESSCSCTTGGGC------------SSCCCCCCSCC--
T ss_pred HHHHHHHHHHHHHHHhhc----CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHH------------hCCCceeCCCC--
Confidence 358888889999998876 567888877543 589999999999876653 45333332210
Q ss_pred CcceecCCcccccchhhhhcccce
Q psy13357 125 NSYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 125 ~~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
...+-+|+|+++|..+.+.+
T Consensus 108 ----~~~~g~GlGL~i~~~~~~~~ 127 (161)
T 1bxd_A 108 ----RTISGTGLGLAIVQRIVDNH 127 (161)
T ss_dssp ----CCCCCCSCCCCTTHHHHHHH
T ss_pred ----CCCCCcccCHHHHHHHHHHc
Confidence 11234899999999888766
No 46
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.45 E-value=0.00024 Score=69.03 Aligned_cols=85 Identities=21% Similarity=0.275 Sum_probs=54.7
Q ss_pred CchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCC
Q psy13357 48 TGLHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNK 124 (833)
Q Consensus 48 ~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd 124 (833)
.-|..++.++|+||+..+..+..-.|.|.+..++ .|+|.|||.|||.+..+. +|.....+..-
T Consensus 42 ~~l~~il~nLl~NAi~~~~~~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~------------lf~~~~~~~~~-- 107 (177)
T 3sl2_A 42 DKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEK------------VFDRFYRVDKA-- 107 (177)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTT------------TTSTTCCCC----
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHH------------HHhhhccCCCC--
Confidence 3588999999999999875543223444435543 589999999999875543 44333332211
Q ss_pred CcceecCCcccccchhhhhcccce
Q psy13357 125 NSYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 125 ~~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
.....+-+|+|+++|..+.+.+
T Consensus 108 --~~~~~~g~GlGL~iv~~~~~~~ 129 (177)
T 3sl2_A 108 --RTRKLGGTGLGLAIAKEMVQAH 129 (177)
T ss_dssp ------CCCCCCHHHHHHHHHHHT
T ss_pred --CCCCCCCCCcCHHHHHHHHHHc
Confidence 1222345899999999888765
No 47
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.43 E-value=0.0002 Score=67.46 Aligned_cols=79 Identities=27% Similarity=0.384 Sum_probs=51.8
Q ss_pred CchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCC
Q psy13357 48 TGLHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNK 124 (833)
Q Consensus 48 ~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd 124 (833)
.-|..++.++|+||+..+..| .|.|.+..++ .|+|.|||.|||.+..+. +|.....+..
T Consensus 45 ~~l~~il~nLl~NA~~~~~~~---~I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~------------if~~f~~~~~--- 106 (150)
T 1ysr_A 45 AGLRLAVDNAIANAVKHGGAT---LVQLSAVSSRAGVEIAIDDNGSGVPEGERQV------------VFERFSRGST--- 106 (150)
T ss_dssp HHHHHHHHHHHHHHHHTTCCS---EEEEEEEEETTEEEEEEEESSSCCCGGGHHH------------HHTSCC-------
T ss_pred HHHHHHHHHHHHHHHhcCCCc---EEEEEEEecCCEEEEEEEECCCCCCHHHHHH------------HhcccccCCC---
Confidence 358889999999999976443 7888876543 589999999999876543 4433222111
Q ss_pred CcceecCCcccccchhhhhcccce
Q psy13357 125 NSYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 125 ~~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
...+-+|+|+++|..+.+.+
T Consensus 107 ----~~~~g~GlGL~i~~~~~~~~ 126 (150)
T 1ysr_A 107 ----ASHSGSGLGLALVAQQAQLH 126 (150)
T ss_dssp -----------CCCHHHHHHHHHT
T ss_pred ----CCCCCCCcCHHHHHHHHHHc
Confidence 11234899999999998765
No 48
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=97.28 E-value=0.00024 Score=66.92 Aligned_cols=78 Identities=23% Similarity=0.352 Sum_probs=46.2
Q ss_pred CchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC-------------eEEEEECCCCcccccccCCCCCCCCcceeeeee
Q psy13357 48 TGLHHLVFEILDNAIDESLAGYCTKINVTIYSDN-------------SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMT 114 (833)
Q Consensus 48 ~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg-------------sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft 114 (833)
.-|..++.++++||+..+..+ ...|.|.+..++ .|+|.|||.|||.+..+. +|.
T Consensus 47 ~~l~~il~nLl~NAik~~~~~-~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~------------lf~ 113 (160)
T 1r62_A 47 DQIEQVLLNIVRNALQALGPE-GGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDT------------LFY 113 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHGGG-CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC----------------------
T ss_pred HHHHHHHHHHHHHHHHHhhcc-CCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHH------------hhC
Confidence 358899999999999987542 457877776432 488999999999875543 443
Q ss_pred eccccCCCCCCcceecCCcccccchhhhhcccce
Q psy13357 115 ELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 115 ~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
....+. .+-+|+|+++|..+.+.+
T Consensus 114 ~~~~~~----------~~g~GlGL~i~~~~~~~~ 137 (160)
T 1r62_A 114 PMVSGR----------EGGTGLGLSIARNLIDQH 137 (160)
T ss_dssp --------------------CHHHHHHHHHHHHT
T ss_pred ccccCC----------CCCCccCHHHHHHHHHHC
Confidence 322211 123899999999988765
No 49
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.27 E-value=0.00023 Score=78.98 Aligned_cols=89 Identities=27% Similarity=0.410 Sum_probs=62.2
Q ss_pred chhHHHHHHHHHHHhhhcCCC-----CCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccC
Q psy13357 49 GLHHLVFEILDNAIDESLAGY-----CTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGG 120 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~-----~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGg 120 (833)
-|.+++.++|+||+.....|. ...|.|++..++ .|+|.|+|.|||.+..+. +|...+.+.
T Consensus 230 ~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~------------if~~f~~~~ 297 (394)
T 2e0a_A 230 HLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDR------------LFSYTYSTA 297 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHH------------HTSTTCCSS
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHH------------HhCcCccCC
Confidence 489999999999999887654 456999987654 699999999999886654 564444433
Q ss_pred CCC--CCcceecCCcccccchhhhhccccee
Q psy13357 121 KFN--KNSYKISGGLHGIGLSCVNGLSRFLQ 149 (833)
Q Consensus 121 KFd--d~~ykvSgGlhGvG~svvNAlS~~~~ 149 (833)
+-. ++......+-.|+|+++|..+.+.+.
T Consensus 298 ~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~g 328 (394)
T 2e0a_A 298 PTPVMDNSRNAPLAGFGYGLPISRLYAKYFQ 328 (394)
T ss_dssp CCC------CCCSSCSSCHHHHHHHHHHHTT
T ss_pred CCCCcCcCCCCCCCCcccCHHHHHHHHHHhC
Confidence 210 00011122348999999999988763
No 50
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=97.24 E-value=0.00045 Score=63.21 Aligned_cols=60 Identities=27% Similarity=0.447 Sum_probs=45.2
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC--eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCCc
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSDN--SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNS 126 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg--sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ 126 (833)
-|..++.|+++||+..+ ....|.|++..++ .|+|.|||.|||.+ .
T Consensus 43 ~l~~il~nll~NA~k~~---~~~~i~i~~~~~~~~~i~v~D~G~gi~~~--------~---------------------- 89 (129)
T 3zxo_A 43 QAEAVVREAVSNAVRHA---AASTLTVRVKVDDDLCIEVTDNGRGMPDE--------F---------------------- 89 (129)
T ss_dssp HHHHHHHHHHHHCCCCS---SCCEEEEEEEESSEEEEEEEECCCCCTTT--------T----------------------
T ss_pred HHHHHHHHHHHHHHHhC---CCceEEEEEEEcCCEEEEEecCCCCCCcc--------c----------------------
Confidence 45666777777777765 3468999988765 68999999999843 1
Q ss_pred ceecCCcccccchhhhhcccce
Q psy13357 127 YKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 127 ykvSgGlhGvG~svvNAlS~~~ 148 (833)
+|+|++.+..+.+.+
T Consensus 90 -------~GlGL~i~~~~~~~~ 104 (129)
T 3zxo_A 90 -------TGSGLTNLRQRAEQA 104 (129)
T ss_dssp -------CSHHHHHHHHHHHHT
T ss_pred -------CCcCHHHHHHHHHHc
Confidence 589999998887665
No 51
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.24 E-value=0.00021 Score=78.98 Aligned_cols=90 Identities=23% Similarity=0.293 Sum_probs=61.0
Q ss_pred CchhHHHHHHHHHHHhhhcCCCC------CeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccc
Q psy13357 48 TGLHHLVFEILDNAIDESLAGYC------TKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHA 118 (833)
Q Consensus 48 ~GL~hlv~EIVdNsiDE~~aG~~------~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhA 118 (833)
.-|.+++.++|+||+.....|.. ..|.|++..++ .|+|.|+|.|||.+..+. +|....+
T Consensus 237 ~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~------------iF~~f~~ 304 (388)
T 1gkz_A 237 MPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDR------------VMDYHFT 304 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTT------------TTSTTCC
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHH------------hcCcccc
Confidence 35899999999999999876542 27999987654 599999999999876654 5544433
Q ss_pred cCC-----------CCC-----CcceecCCcccccchhhhhccccee
Q psy13357 119 GGK-----------FNK-----NSYKISGGLHGIGLSCVNGLSRFLQ 149 (833)
Q Consensus 119 GgK-----------Fdd-----~~ykvSgGlhGvG~svvNAlS~~~~ 149 (833)
+.+ |+. .......+-.|+|+++|..+.+.+-
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~g 351 (388)
T 1gkz_A 305 TAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLG 351 (388)
T ss_dssp CC-------------------------CCSCSSCHHHHHHHHHHHTT
T ss_pred cCCCcccccccccchhhcccccccCCCCcCCccCCHHHHHHHHHHhC
Confidence 322 110 0001111337999999999998763
No 52
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.18 E-value=0.0007 Score=69.58 Aligned_cols=76 Identities=21% Similarity=0.463 Sum_probs=55.2
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKN 125 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~ 125 (833)
-|..++.++|+||++.+.+| ..|.|.+..++ .|+|.|||.|||.+..+. +|....+
T Consensus 155 ~l~~il~nLl~NA~~~~~~~--~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~------------if~~~~~------- 213 (268)
T 4ew8_A 155 RLAQTLDHLVENALRQTPPG--GRVTLSARRALGEVRLDVSDTGRGVPFHVQAH------------IFDRFVG------- 213 (268)
T ss_dssp HHHHHHHHHHHHHHHHSCTT--CEEEEEEEECSSEEEEEEEESSCCCCHHHHTT------------TTSTTCC-------
T ss_pred HHHHHHHHHHHHHHHhCCCC--CEEEEEEEecCCEEEEEEEcCCCCCCHHHHHH------------HHHHHhc-------
Confidence 48889999999999987543 57888887654 699999999999876543 3422211
Q ss_pred cceecCCcccccchhhhhcccce
Q psy13357 126 SYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 126 ~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
...+-+|+|+++|..+.+.+
T Consensus 214 ---~~~~g~GlGL~i~~~~~~~~ 233 (268)
T 4ew8_A 214 ---RDRGGPGLGLALVKALVELH 233 (268)
T ss_dssp ---CSSCCCTTHHHHHHHHHHHT
T ss_pred ---CCCCCCcccHHHHHHHHHHc
Confidence 11234799999999888765
No 53
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=97.17 E-value=0.00058 Score=70.17 Aligned_cols=85 Identities=20% Similarity=0.306 Sum_probs=55.7
Q ss_pred CchhHHHHHHHHHHHhhhcCC-CCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCC
Q psy13357 48 TGLHHLVFEILDNAIDESLAG-YCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFN 123 (833)
Q Consensus 48 ~GL~hlv~EIVdNsiDE~~aG-~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFd 123 (833)
.-|..++..+|+||++....+ ....|.|.+..++ .|+|.|||.|||.+..+. +|...+.+..
T Consensus 137 ~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~------------if~~f~~~~~-- 202 (258)
T 2c2a_A 137 TRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDR------------IFEQFYRVDS-- 202 (258)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTG------------GGSTTCCCC---
T ss_pred HHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecCCCeEEEEEEecCCCCCHHHHHh------------hccccccCCC--
Confidence 358889999999999976544 2356888776533 589999999999886654 5543332211
Q ss_pred CCcceecCCcccccchhhhhcccce
Q psy13357 124 KNSYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 124 d~~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
..-...+| .|+|+++|..+.+.+
T Consensus 203 -~~~~~~~G-~GLGL~i~~~iv~~~ 225 (258)
T 2c2a_A 203 -SLTYEVPG-TGLGLAITKEIVELH 225 (258)
T ss_dssp ----------CCCTHHHHHHHHHHT
T ss_pred -CCCCCCCC-cchHHHHHHHHHHHc
Confidence 00011223 799999999887655
No 54
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=97.11 E-value=0.00077 Score=62.18 Aligned_cols=44 Identities=23% Similarity=0.157 Sum_probs=34.1
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccc
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPID 95 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~ 95 (833)
-|..++.|+++||+..+- ++.|.|.+..++ .|+|.|||+|||.+
T Consensus 40 ~l~~il~nll~Na~k~~~---~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~ 86 (128)
T 3ehg_A 40 ILSMCLKEAVTNVVKHSQ---AKTCRVDIQQLWKEVVITVSDDGTFKGEE 86 (128)
T ss_dssp HHHHHHHHHHHHHHHHTC---CSEEEEEEEEETTEEEEEEEESSCCCSCS
T ss_pred HHHHHHHHHHHHHHhcCC---CcEEEEEEEEeCCEEEEEEEECCcCcCcc
Confidence 466778888888888763 468888887643 68999999999954
No 55
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.07 E-value=0.00028 Score=78.60 Aligned_cols=89 Identities=22% Similarity=0.368 Sum_probs=62.0
Q ss_pred chhHHHHHHHHHHHhhhcCCC-----CCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccC
Q psy13357 49 GLHHLVFEILDNAIDESLAGY-----CTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGG 120 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~-----~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGg 120 (833)
-|.+++.++|+||+.....|. ...|.|++..++ .|+|.|+|.|||.+..+. +|.....+.
T Consensus 243 ~L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~------------if~~f~~~~ 310 (407)
T 2q8g_A 243 HLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDR------------LFNYMYSTA 310 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGG------------GGCTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHH------------HhCccccCC
Confidence 488999999999999887654 347888887644 599999999999886654 665444433
Q ss_pred CCCC--CcceecCCcccccchhhhhccccee
Q psy13357 121 KFNK--NSYKISGGLHGIGLSCVNGLSRFLQ 149 (833)
Q Consensus 121 KFdd--~~ykvSgGlhGvG~svvNAlS~~~~ 149 (833)
+-.. ..-....+-.|+|+++|..+.+.+.
T Consensus 311 ~~~~~~~~~~~~~~G~GLGL~Ivr~i~~~~g 341 (407)
T 2q8g_A 311 PRPRVETSRAVPLAGFGYGLPISRLYAQYFQ 341 (407)
T ss_dssp CCCCSSCCSCCCSSCTTCHHHHHHHHHHHTT
T ss_pred CCCCccccCCCCCCCcCCCHHHHHHHHHHhC
Confidence 2100 0001112348999999999987763
No 56
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.03 E-value=0.00021 Score=79.99 Aligned_cols=89 Identities=21% Similarity=0.341 Sum_probs=59.9
Q ss_pred chhHHHHHHHHHHHhhhcCCC------CCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeecccc
Q psy13357 49 GLHHLVFEILDNAIDESLAGY------CTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAG 119 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~------~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAG 119 (833)
-|.+++.++|+||+.....|. ...|.|.+..++ .|+|.|+|.|||.+..+. +|.....+
T Consensus 253 ~L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~------------iF~~f~~~ 320 (419)
T 1y8o_A 253 HLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDR------------LFNYMYST 320 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGG------------GGCTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHH------------HhCccccc
Confidence 489999999999999887654 457999887654 699999999999887664 66544443
Q ss_pred CCCC--CCcceecCCcccccchhhhhccccee
Q psy13357 120 GKFN--KNSYKISGGLHGIGLSCVNGLSRFLQ 149 (833)
Q Consensus 120 gKFd--d~~ykvSgGlhGvG~svvNAlS~~~~ 149 (833)
.+-. ++.-....+-.|+|+++|..+.+.+-
T Consensus 321 ~~~~~~~~~~~~~~~G~GLGL~I~k~iv~~~g 352 (419)
T 1y8o_A 321 APRPSLEPTRAAPLAGFGYGLPISRLYARYFQ 352 (419)
T ss_dssp ------------CC--CTTHHHHHHHHHHHTT
T ss_pred CCCCCccccCCCCcCCeecCHHHHHHHHHHhC
Confidence 3210 00011122338999999999987763
No 57
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.00 E-value=0.00027 Score=78.30 Aligned_cols=89 Identities=21% Similarity=0.338 Sum_probs=59.3
Q ss_pred chhHHHHHHHHHHHhhhcCCC-----CCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccC
Q psy13357 49 GLHHLVFEILDNAIDESLAGY-----CTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGG 120 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~-----~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGg 120 (833)
-|.+++.++|+||+.....|. ...|.|++..++ .|+|.|+|.|||.+..+. +|...+.+.
T Consensus 231 ~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~------------iF~~f~~~~ 298 (394)
T 2btz_A 231 HLYHMLFELFKNAMRATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIER------------LFSYMYSTA 298 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHH------------HTCTTTTCC
T ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHH------------HhcccccCC
Confidence 589999999999999887665 246888887654 699999999999886654 564444433
Q ss_pred CCCC-CcceecCCcccccchhhhhccccee
Q psy13357 121 KFNK-NSYKISGGLHGIGLSCVNGLSRFLQ 149 (833)
Q Consensus 121 KFdd-~~ykvSgGlhGvG~svvNAlS~~~~ 149 (833)
+-.. +.-....+-.|+|+++|..+.+.+-
T Consensus 299 ~~~~~~~~~~~~~G~GLGL~i~~~i~~~~g 328 (394)
T 2btz_A 299 PTPQPGTGGTPLAGFGYGLPISRLYAKYFQ 328 (394)
T ss_dssp C--------------CCHHHHHHHHHHHTT
T ss_pred CCCCcccCCCCCCCccCCHHHHHHHHHHhC
Confidence 2100 0001112338999999999988763
No 58
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=97.00 E-value=0.00075 Score=71.81 Aligned_cols=74 Identities=22% Similarity=0.348 Sum_probs=49.8
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKN 125 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~ 125 (833)
-|..++.++|+||+..+- ....|.|.+..++ .|+|.|||.|||.+..+. +|....+ +|
T Consensus 244 ~l~~vl~nLl~NA~k~~~--~~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~------------if~~f~~-~~---- 304 (349)
T 3a0r_A 244 RIKQVLINLVQNAIEATG--ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEK------------IFSPFFT-TK---- 304 (349)
T ss_dssp HHHHHHHHHHTHHHHTTC--TTCCEEEEEEEETTEEEEEEEEESCCCCGGGGTT------------TSSSCCC-C-----
T ss_pred HHHHHHHHHHHHHHHhcc--CCCEEEEEEEecCCEEEEEEEECCCCCChHHHhh------------cCCCCcc-CC----
Confidence 478889999999998763 2457888877643 689999999999886654 4532221 11
Q ss_pred cceecCCcccccchhhhhccc
Q psy13357 126 SYKISGGLHGIGLSCVNGLSR 146 (833)
Q Consensus 126 ~ykvSgGlhGvG~svvNAlS~ 146 (833)
.+-+|+|+++|.-+.+
T Consensus 305 -----~~g~GlGL~i~~~~v~ 320 (349)
T 3a0r_A 305 -----TQGTGLGLSICRKIIE 320 (349)
T ss_dssp ----------CCCTHHHHHHH
T ss_pred -----CCCccchHHHHHHHHH
Confidence 1237999999887764
No 59
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=96.90 E-value=0.0013 Score=59.73 Aligned_cols=44 Identities=20% Similarity=0.397 Sum_probs=33.5
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC--eEEEEECCCCcccc
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSDN--SISISDNGRGIPID 95 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg--sIsV~DnGrGIPv~ 95 (833)
-|..++.|+++||+..+- .+.|.|++..++ .|+|.|||.|||.+
T Consensus 39 ~l~~il~nll~Na~k~~~---~~~i~i~~~~~~~~~i~v~D~G~gi~~~ 84 (124)
T 3zxq_A 39 HAEAVLREAVSNAVRHAN---ATSLAINVSVEDDVRVEVVDDGVGISGD 84 (124)
T ss_dssp HHHHHHHHHHHHHHTCTT---CCEEEEEEEEEEEEEEEEEECCCSSCGG
T ss_pred HHHHHHHHHHHHHHHhCC---CCEEEEEEEeCCCEEEEEEECCCCCCcc
Confidence 466777888888877663 457888887644 68999999999853
No 60
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=96.90 E-value=0.00035 Score=68.55 Aligned_cols=47 Identities=23% Similarity=0.417 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHhhhcC----------CCCCeEEEEEecCC---eEEEEECCCCccccc
Q psy13357 50 LHHLVFEILDNAIDESLA----------GYCTKINVTIYSDN---SISISDNGRGIPIDI 96 (833)
Q Consensus 50 L~hlv~EIVdNsiDE~~a----------G~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~ 96 (833)
+..++.++|+||+..+.. .....|.|.+..++ .|+|.|||+|||.+.
T Consensus 48 l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~ 107 (189)
T 1i58_A 48 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEK 107 (189)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEEETTEEEEEEEECSSCCCHHH
T ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEecCCEEEEEEEeCCCCcCHHH
Confidence 445599999999998753 24568888887644 589999999999774
No 61
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=96.73 E-value=0.0017 Score=64.62 Aligned_cols=43 Identities=23% Similarity=0.196 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccc
Q psy13357 50 LHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPID 95 (833)
Q Consensus 50 L~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~ 95 (833)
+..++.|+++||+..+- ++.|.|.+..++ .|+|.|||+|||.+
T Consensus 131 l~~il~nll~Na~k~~~---~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~ 176 (218)
T 3ehh_A 131 LSMCLKEAVTNVVKHSQ---AKTCRVDIQQLWKEVVITVSDDGTFKGEE 176 (218)
T ss_dssp HHHHHHHHHHHHHHHTC---CSEEEEEEEEETTEEEEEEEESSCCCC--
T ss_pred HHHHHHHHHHHHHHhCC---CCEEEEEEEEeCCEEEEEEEECCcCCCCC
Confidence 56678888888888763 457888887644 69999999999954
No 62
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=96.65 E-value=0.0013 Score=66.26 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=52.6
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCeEEEEEecCC---eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCC
Q psy13357 49 GLHHLVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKN 125 (833)
Q Consensus 49 GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~ 125 (833)
-|..++.++|+||+..+.. ...|.|.+..++ .|+|.|||.|||.+..+. +|.....+.
T Consensus 123 ~l~~il~nLl~NA~~~~~~--~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~------------if~~~~~~~----- 183 (244)
T 3d36_A 123 KFRQCLLNVMKNAIEAMPN--GGTLQVYVSIDNGRVLIRIADTGVGMTKEQLER------------LGEPYFTTK----- 183 (244)
T ss_dssp HHHHHHHHHHHHHHHTCTT--CEEEEEEEEEETTEEEEEEEECSSCCCHHHHHH------------TTSTTCCSS-----
T ss_pred HHHHHHHHHHHHHHHhccC--CCeEEEEEEEeCCEEEEEEEecCCCCCHHHHHH------------HhcccccCC-----
Confidence 5788888888888887632 456777776543 689999999999875543 332221111
Q ss_pred cceecCCcccccchhhhhcccce
Q psy13357 126 SYKISGGLHGIGLSCVNGLSRFL 148 (833)
Q Consensus 126 ~ykvSgGlhGvG~svvNAlS~~~ 148 (833)
.. +-+|+|++.|..+.+.+
T Consensus 184 ---~~-~g~GlGL~i~~~i~~~~ 202 (244)
T 3d36_A 184 ---GV-KGTGLGMMVVYRIIESM 202 (244)
T ss_dssp ---GG-GCCSCHHHHHHHHHHHT
T ss_pred ---CC-CCcchhHHHHHHHHHHc
Confidence 11 23799999998888765
No 63
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=96.14 E-value=0.0055 Score=67.73 Aligned_cols=47 Identities=23% Similarity=0.382 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHhhhcC----------CCCCeEEEEEecCC---eEEEEECCCCcccccc
Q psy13357 51 HHLVFEILDNAIDESLA----------GYCTKINVTIYSDN---SISISDNGRGIPIDIK 97 (833)
Q Consensus 51 ~hlv~EIVdNsiDE~~a----------G~~~~I~V~I~~Dg---sIsV~DnGrGIPv~~h 97 (833)
...+.++|.||+|.+.. .....|.|.+..++ .|+|.|||+|||.+..
T Consensus 108 ~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~ 167 (379)
T 1b3q_A 108 GEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKI 167 (379)
T ss_dssp HHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEEeCCEEEEEEEECCCCCCHHHH
Confidence 33499999999999742 24567888887644 5899999999998754
No 64
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=96.00 E-value=0.014 Score=65.07 Aligned_cols=84 Identities=19% Similarity=0.202 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHHhhhcCC-CCCeEEEEEec--CC--eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCC
Q psy13357 50 LHHLVFEILDNAIDESLAG-YCTKINVTIYS--DN--SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNK 124 (833)
Q Consensus 50 L~hlv~EIVdNsiDE~~aG-~~~~I~V~I~~--Dg--sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd 124 (833)
+.-++.|++.||+..+... ....|.|.+.. ++ .|+|+|+|+|+|.. +.
T Consensus 298 ~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~--~~------------------------- 350 (399)
T 3ke6_A 298 IVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHR--DG------------------------- 350 (399)
T ss_dssp HHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTSEEEEEEEESCBC---------------------------------
T ss_pred HHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCCEEEEEEEECCCCCCCC--CC-------------------------
Confidence 5668899999999998643 24568777764 34 68999999999853 11
Q ss_pred CcceecCCcccccchhhhhcccceeEEEEeCCeEEEEEEEcc
Q psy13357 125 NSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYG 166 (833)
Q Consensus 125 ~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~Gk~y~q~f~~G 166 (833)
.+-+|.|+.+|..|+..+.+....+|+...++|.-.
T Consensus 351 ------~~~~G~GL~lv~~l~~~~~~~~~~~G~~v~~~~~~~ 386 (399)
T 3ke6_A 351 ------ARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLS 386 (399)
T ss_dssp ------------CHHHHHTTSSEEEEEEETTEEEEEEEEECE
T ss_pred ------CCCCCcHHHHHHHHHHheeeEECCCcEEEEEEEEcC
Confidence 124689999999999998876666777777776544
No 65
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=94.93 E-value=0.014 Score=60.18 Aligned_cols=76 Identities=21% Similarity=0.177 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCeEEEEEecC-C--eEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCCc
Q psy13357 50 LHHLVFEILDNAIDESLAGYCTKINVTIYSD-N--SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNS 126 (833)
Q Consensus 50 L~hlv~EIVdNsiDE~~aG~~~~I~V~I~~D-g--sIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ 126 (833)
+..++.-++.||++..-. ...|.|.+..+ + .|+|.|+|.|||++.+ +|-.++ +. |...
T Consensus 147 ~~qvl~NLl~NA~~a~~~--gg~I~v~~~~~~~~~~i~V~D~G~Gi~i~~~--------------~~~~~f-~~-~~~~- 207 (247)
T 4fpp_A 147 SSRAVLNIAQIAASALPA--GGVATVKGVAADGRFSIIADAKGPRARLRPE--------------VLAGLK-GE-PLAE- 207 (247)
T ss_dssp HHHHHHHHHHHHHTTCTT--CCEEEEEEEEETTEEEEEEEEESTTCCCCHH--------------HHHHHT-TC-CCCS-
T ss_pred HHHHHHHHHHHHHHhcCC--CCeEEEEEEEECCEEEEEEEEcCCCCCCCHH--------------HHHHhc-CC-CCCC-
Confidence 556667777777765433 35788887763 3 6899999999987632 232222 11 2111
Q ss_pred ceecCCcccccchhhhhcccc
Q psy13357 127 YKISGGLHGIGLSCVNGLSRF 147 (833)
Q Consensus 127 ykvSgGlhGvG~svvNAlS~~ 147 (833)
+. +| +|+|+++|-.+-+.
T Consensus 208 -~~-~G-~GLGLai~~~iv~~ 225 (247)
T 4fpp_A 208 -GL-GG-PWVQAAYLNALVRA 225 (247)
T ss_dssp -SC-HH-HHHHHHHHHHHHHH
T ss_pred -CC-CC-ccHHHHHHHHHHHH
Confidence 11 23 79999988776644
No 66
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=79.66 E-value=2 Score=43.01 Aligned_cols=40 Identities=10% Similarity=0.058 Sum_probs=28.4
Q ss_pred HHHHhhhc-CCCCCeEEEEEecC--C---eEEEEECCCCccccccc
Q psy13357 59 DNAIDESL-AGYCTKINVTIYSD--N---SISISDNGRGIPIDIKI 98 (833)
Q Consensus 59 dNsiDE~~-aG~~~~I~V~I~~D--g---sIsV~DnGrGIPv~~h~ 98 (833)
.||++++. .+....|.|+|..+ + .|+|.|+|+|||.+...
T Consensus 118 ~~Ai~~~~~~~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~ 163 (192)
T 1ixm_A 118 FHLFDQAVSRESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFD 163 (192)
T ss_dssp HHHHHHHBCTTSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC
T ss_pred HHHHHhhhccCCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHH
Confidence 44444432 23567899998876 3 69999999999987554
No 67
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=54.45 E-value=51 Score=37.34 Aligned_cols=77 Identities=14% Similarity=0.281 Sum_probs=52.1
Q ss_pred eEEEEeeeecCCC----cceeEEeecceecc-CCcchHHHHHHHHHHHHHHHHHHcccccccCCCCCHHHHh-hcceeEE
Q psy13357 284 INIDVSMQWNNSY----NENILCFTNNILQV-DGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIR-EGLTCVL 357 (833)
Q Consensus 284 i~veval~~~d~~----~e~i~SFVN~I~T~-~GGTHv~gf~~altr~in~y~~~~~l~Kk~k~~l~~~DIr-egL~avI 357 (833)
..||+++.|...- .-.++-|+|-||.. +.|. .++|+++... +. +..+.+ .. .-+.++|
T Consensus 351 f~ve~~~a~gg~~~~~~~~~~~r~anr~pl~~~~~~------~~~~~~~~~~----~w-~~y~~~-----~~~~~~~~~v 414 (471)
T 1mu5_A 351 FIVEAGVAFGGSIPVGEEPIVLRYANKIPLIYDEKS------DVIWKVVEEL----DW-KRYGIE-----SDQYQMVVMV 414 (471)
T ss_dssp EEEEEEEEESTTSCCBSSCEEEEEETTEEECSCGGG------SHHHHHHHHS----CG-GGGTCC-----SSCBCEEEEE
T ss_pred EEEEEEeeccCCCCCCCCceEEEEeccCceeecCCc------chhhhhhccC----Ch-hhcCcC-----CCCCCEEEEE
Confidence 5689999996432 23699999999987 4553 3556666321 11 111111 11 2578999
Q ss_pred EEeecCCCCCccccccccc
Q psy13357 358 SIKIPDPKFNSQTKNKLVS 376 (833)
Q Consensus 358 svki~nP~FegQTK~kL~n 376 (833)
++--++-.|.|-.|+.+..
T Consensus 415 ~i~st~vp~~~~~k~~i~~ 433 (471)
T 1mu5_A 415 HLCSTKIPYKSAGKESIAE 433 (471)
T ss_dssp EEEESSCCBSSTTCCCBCC
T ss_pred EeccCCCCcCCCCccccCC
Confidence 9999999999999999885
No 68
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=48.36 E-value=64 Score=37.09 Aligned_cols=85 Identities=14% Similarity=0.288 Sum_probs=55.5
Q ss_pred eEEEEeeeecCCC----cceeEEeecceecc-CCcchHHHHHHHHHHHHHHHHHHcccccccCCCCCHHHHh-hcceeEE
Q psy13357 284 INIDVSMQWNNSY----NENILCFTNNILQV-DGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIR-EGLTCVL 357 (833)
Q Consensus 284 i~veval~~~d~~----~e~i~SFVN~I~T~-~GGTHv~gf~~altr~in~y~~~~~l~Kk~k~~l~~~DIr-egL~avI 357 (833)
..||+++.|...- .-.++-|+|-||.. +.|. .++|+++.. -+. +..+.+ .. .-+.++|
T Consensus 350 f~vE~~~a~gg~~~~~~~~~i~r~aNrvpl~~~~~~------~~~~~~~~~----~~w-~~y~~~-----~~~~~~~~~v 413 (530)
T 2zbk_B 350 FIVEAGVAFGGSIPVGEEPIVLRYANKIPLIYDEKS------DVIWKVVEE----LDW-KRYGIE-----SDQYQMVVMV 413 (530)
T ss_dssp EEEEEEEEESTTSCCBSSCEEEEEETTEEECTTGGG------CHHHHHHHH----SCT-TSSSCC-----CSSBCEEEEE
T ss_pred EEEEEEeeccCCCCCCCCceEEEEecCCceeecCCc------chhhhhhcc----CCh-hhcCcC-----CCCCCEEEEE
Confidence 5689999996432 23699999999986 4553 355666632 111 111121 12 2578999
Q ss_pred EEeecCCCCCccccccccc-cccchhhH
Q psy13357 358 SIKIPDPKFNSQTKNKLVS-SEVRKPVE 384 (833)
Q Consensus 358 svki~nP~FegQTK~kL~n-~ev~~~v~ 384 (833)
++--++-.|.|-.|+.+.. +|+...+.
T Consensus 414 ~i~st~vp~~~~~Ke~i~~~~ei~~ei~ 441 (530)
T 2zbk_B 414 HLCSTKIPYKSAGKESIAEVENIEKEIK 441 (530)
T ss_dssp EEEESSCCBSSSSCSCBCCCHHHHHHHH
T ss_pred EeccCCCCcCCCCccccCCcHHHHHHHH
Confidence 9999999999999999885 34443333
No 69
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=37.76 E-value=14 Score=34.21 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=22.5
Q ss_pred CCCc-eeeccCCCCCchhHHHHHHHHH
Q psy13357 523 RYHR-IIIMTDADIDGAHIRALLLTFF 548 (833)
Q Consensus 523 RY~k-IiImTDADvDGsHI~~Llltff 548 (833)
||.. |||+||.|.=|-.|+.-+...|
T Consensus 60 ~~~~~VIIltD~D~aGe~ir~~i~~~l 86 (118)
T 1t6t_1 60 GKWEKVILLFDLDTHGERINQKMKELL 86 (118)
T ss_dssp TTCSEEEECCCSSHHHHHHHHHHHHHH
T ss_pred hCCCEEEEEECCChhHHHHHHHHHHhc
Confidence 4667 9999999999999998877665
No 70
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=24.23 E-value=25 Score=32.61 Aligned_cols=39 Identities=23% Similarity=0.406 Sum_probs=30.8
Q ss_pred CCCceeeccCCCCCchhHHHHHHHHHHHhcHhhhhcCcEEEEcCcE
Q psy13357 523 RYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPL 568 (833)
Q Consensus 523 RY~kIiImTDADvDGsHI~~Llltff~r~~p~Li~~G~vyia~pPL 568 (833)
.+..|||+||.|.=|--||..|...| |.- .|.|+...|.
T Consensus 49 ~~r~VIi~TD~D~~GekIRk~i~~~l----p~~---~hafi~r~~~ 87 (119)
T 2fcj_A 49 EGYDVYLLADADEAGEKLRRQFRRMF----PEA---EHLYIDRAYR 87 (119)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHC----TTS---EEECCCTTTC
T ss_pred cCCCEEEEECCCccHHHHHHHHHHHC----CCC---cEEeccCCcc
Confidence 47789999999999999998776554 443 5888888773
No 71
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=21.20 E-value=3.1e+02 Score=32.11 Aligned_cols=82 Identities=17% Similarity=0.320 Sum_probs=51.6
Q ss_pred eEEEEeeeecCCC----cceeEEeeccee-ccCCcchHHHHHHHHHHHHHHHHHHcccccccCCCCCHHHHh-hcceeEE
Q psy13357 284 INIDVSMQWNNSY----NENILCFTNNIL-QVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIR-EGLTCVL 357 (833)
Q Consensus 284 i~veval~~~d~~----~e~i~SFVN~I~-T~~GGTHv~gf~~altr~in~y~~~~~l~Kk~k~~l~~~DIr-egL~avI 357 (833)
..||+|+.|...- .-.++=|+|-|| ..+.|. .++|+++... +. +..+.+-.+..+- .-+.++|
T Consensus 353 fivE~~ia~gg~~~~~~~~~~~rfanrvpll~~~g~------~~~t~~~~~~----~w-~~y~~~~~~~~~p~~~~~~~v 421 (621)
T 2q2e_B 353 FVVEVGMAYGGNLPKEEKISIMRFANRVPLLYQQGG------CVTTHAVEDI----KW-KQYGLNQPGGGIPVGPVILLI 421 (621)
T ss_dssp EEEEEEEEESSSSCSSSCCCEEEEETTBCCCSCCTT------CHHHHHHHHS----CC-TTTTCCCCSSSSCCSSCCEEE
T ss_pred eEEEEeeecCCCCCCCCceeEEEEccCCceeecCCc------cHHHHHHHhC----Ch-hhcCcCCCCCCCCCCCEEEEE
Confidence 5689999996322 236899999999 345554 2456666421 11 1111111111111 1367899
Q ss_pred EEeecCCCCCccccccccc
Q psy13357 358 SIKIPDPKFNSQTKNKLVS 376 (833)
Q Consensus 358 svki~nP~FegQTK~kL~n 376 (833)
++--.+-.|.|--|+.+.+
T Consensus 422 ~~~st~vp~~~~~ke~ia~ 440 (621)
T 2q2e_B 422 HVASINVPFTSESKDAIAD 440 (621)
T ss_dssp EEECSSCCBSSSSSSSBCC
T ss_pred EEeecCCCcCCcchhhhcC
Confidence 9999999999999999985
No 72
>3hqc_A Tensin-like C1 domain-containing phosphatase; TENC1, phosphotyrosine binding domain, PTB, TNS2, KIAA1075, struct genomics, PSI-2; 1.80A {Homo sapiens} SCOP: b.55.1.2 PDB: 2loz_A 2dkq_A
Probab=20.18 E-value=88 Score=30.30 Aligned_cols=49 Identities=16% Similarity=0.295 Sum_probs=29.0
Q ss_pred eeeecCCCcCchhHHHHHHHHHHHhhhcC----CCCCeEEEEEecCCeEEEEECCCC
Q psy13357 39 MYIGDTSDGTGLHHLVFEILDNAIDESLA----GYCTKINVTIYSDNSISISDNGRG 91 (833)
Q Consensus 39 MYIGst~~~~GL~hlv~EIVdNsiDE~~a----G~~~~I~V~I~~DgsIsV~DnGrG 91 (833)
+|+||++. +.|-- -++|..||...+. ...+.+...+..+| |++.||-|=
T Consensus 19 ~yLgSvev-esltG--~~av~kAv~~~l~~~~~~~~t~V~fkVS~qG-ItLtD~~rK 71 (157)
T 3hqc_A 19 LYLTSVET-ESLTG--PQAVARASSAALSCSPRPTPAVVHFKVSAQG-ITLTDNQRK 71 (157)
T ss_dssp EEEEEEEC-TTCCH--HHHHHHHHHHHHHCC---CCEEEEEEEETTE-EEEEEEETT
T ss_pred EEeceEec-CCCCC--hHHHHHHHHHHHhcCCCCCCeEEEEEEeCCC-ceEEecccc
Confidence 79999876 22211 1444444444442 13456777777654 899998763
Done!