BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1336
(96 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G5V|B Chain B, Antibodies Specifically Targeting A Locally Misfolded
Region Of Tumor Associated Egfr
Length = 213
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 18 YSLSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLNHTANETYLSLNML 77
YS++S N + P +KL W I+++ R + S I + ++N+ +L LN +
Sbjct: 27 YSITSDFAWNWIRQFPGNKLEWMGYISYSGNTRYNPSLKSRISITRDTSSNQFFLQLNSV 86
Query: 78 SLCDIVLNH--TANETF 92
++ D + TA F
Sbjct: 87 TIEDTATYYCVTAGRGF 103
>pdb|3CFD|H Chain H, Purple-fluorescent Antibody Ep2-25c10 In Complex With Its
Stilbene Hapten
pdb|3CFD|B Chain B, Purple-fluorescent Antibody Ep2-25c10 In Complex With Its
Stilbene Hapten
pdb|3CFE|H Chain H, Crystal Structure Of Purple-Fluorescent Antibody Ep2-25c10
pdb|3CFE|B Chain B, Crystal Structure Of Purple-Fluorescent Antibody Ep2-25c10
Length = 220
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%)
Query: 18 YSLSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLNHTANETYLSLNML 77
YS++S N L P +KL W I+++ ++R + I + + N+ +L LN +
Sbjct: 27 YSITSDYAWNWLRQLPGNKLEWMGYISYSGRIRYNPSLKRRISITRDTSKNQFFLQLNSV 86
Query: 78 SLCDIVLNHTANETFD 93
+ D + A +
Sbjct: 87 TTEDTATYYCARSDYG 102
>pdb|3G5X|B Chain B, Antibodies Specifically Targeting A Locally Misfolded
Region Of Tumor Associated Egfr
pdb|3G5X|D Chain D, Antibodies Specifically Targeting A Locally Misfolded
Region Of Tumor Associated Egfr
Length = 216
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 18 YSLSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLNHTANETYLSLNML 77
YS++S N + P +KL W I+++ R + S I + + N+ +L LN +
Sbjct: 27 YSITSDFAWNWIRQFPGNKLEWMGYISYSGNTRYNPSLKSRISITRDTSKNQFFLQLNSV 86
Query: 78 SLCDIVLNH--TANETFD 93
++ D + TA F
Sbjct: 87 TIEDTATYYCVTAGRGFP 104
>pdb|3G5Y|B Chain B, Antibodies Specifically Targeting A Locally Misfolded
Region Of Tumor Associated Egfr
Length = 216
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 18 YSLSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLNHTANETYLSLNML 77
YS++S N + P +KL W I+++ R + S I + + N+ +L LN +
Sbjct: 27 YSITSDYAWNWIRQFPGNKLEWMGYISYSANTRYNPSLKSRISITRDTSKNQFFLQLNSV 86
Query: 78 SLCDIVLNH--TANETFD 93
++ D + TA F
Sbjct: 87 TVEDTATYYCATAGRGFP 104
>pdb|3G5Z|B Chain B, Antibodies Specifically Targeting A Locally Misfolded
Region Of Tumor Associated Egfr
Length = 217
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 18 YSLSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLNHTANETYLSLNML 77
YS++S N + P +KL W I+++ R + S I + ++N+ +L LN +
Sbjct: 27 YSITSDFAWNWIRQFPGNKLEWMGYISYSGNTRYNPSLKSRISITRDTSSNQFFLQLNSV 86
Query: 78 SLCDIVLNH--TANETFD 93
+ D + TA F
Sbjct: 87 TPEDTATYYCATAGRGFP 104
>pdb|1HQ4|B Chain B, Structure Of Native Catalytic Antibody Ha5-19a4
pdb|1HQ4|D Chain D, Structure Of Native Catalytic Antibody Ha5-19a4
Length = 218
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%)
Query: 18 YSLSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLNHTANETYLSLNML 77
YS++S N + P +KL W I ++ R + S I + + N+ +L LN +
Sbjct: 27 YSITSGYAWNWIRQFPGNKLEWMGYIRYSGDTRYNPSLKSRISITRDTSKNQFFLQLNSV 86
Query: 78 SLCDIVLNHTA 88
+ D + A
Sbjct: 87 TTEDTATYYCA 97
>pdb|1CF8|H Chain H, Convergence Of Catalytic Antibody And Terpene Cyclase
Mechanisms: Polyene Cyclization Directed By
Carbocation-pi Interactions
Length = 218
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%)
Query: 18 YSLSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLNHTANETYLSLNML 77
YS++S N + P +KL W I ++ R + S I + + N+ +L LN +
Sbjct: 27 YSITSGYAWNWIRQFPGNKLEWMGYIRYSGDTRYNPSLKSRISITRDTSKNQFFLQLNSV 86
Query: 78 SLCDIVLNHTA 88
+ D + A
Sbjct: 87 TTEDTATYYCA 97
>pdb|3B9G|A Chain A, Crystal Structure Of Loop Deletion Mutant Of Trypanosoma
Vivax Nucleoside Hydrolase (3gtvnh) In Complex With Immh
pdb|3B9G|B Chain B, Crystal Structure Of Loop Deletion Mutant Of Trypanosoma
Vivax Nucleoside Hydrolase (3gtvnh) In Complex With Immh
Length = 328
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 20 LSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLN 64
L+ +D P+ + PE+ WD + A EK E Q L L D+V+N
Sbjct: 97 LAKNMDDMPILNIPENVELWDKIKAENEKY--EGQQL-LADLVMN 138
>pdb|1R4F|A Chain A, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Trp260ala Mutant In
Complex With 3- Deaza-Adenosine
pdb|1R4F|B Chain B, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Trp260ala Mutant In
Complex With 3- Deaza-Adenosine
Length = 339
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 20 LSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLN 64
L+ +D P+ + PE+ WD + A EK E Q L L D+V+N
Sbjct: 98 LAKNMDDMPILNIPENVELWDKIKAENEKY--EGQQL-LADLVMN 139
>pdb|1KIC|A Chain A, Inosine-adenosine-guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In
Complex With Inosine
pdb|1KIC|B Chain B, Inosine-adenosine-guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In
Complex With Inosine
pdb|1KIE|A Chain A, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In
Complex With 3- Deaza-Adenosine
pdb|1KIE|B Chain B, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In
Complex With 3- Deaza-Adenosine
Length = 339
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 20 LSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLN 64
L+ +D P+ + PE+ WD + A EK E Q L L D+V+N
Sbjct: 98 LAKNMDDMPILNIPENVELWDKIKAENEKY--EGQQL-LADLVMN 139
>pdb|3UEQ|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With Turanose
Length = 632
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 12 GGSNSCYSLSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLNHTANE 69
G S+ Y++SS D+NP T +VIA E + ++ D + NHT+NE
Sbjct: 145 GKSDGGYAVSSYRDVNPALGTIG---DLREVIAALH----EAGISAVVDFIFNHTSNE 195
>pdb|1MVY|A Chain A, Amylosucrase Mutant E328q Co-Crystallized With
Maltoheptaose.
pdb|1MW0|A Chain A, Amylosucrase Mutant E328q Co-crystallized With
Maltoheptaose Then Soaked With Maltoheptaose.
pdb|1S46|A Chain A, Covalent Intermediate Of The E328q Amylosucrase Mutant
pdb|1ZS2|A Chain A, Amylosucrase Mutant E328q In A Ternary Complex With
Sucrose And Maltoheptaose
Length = 628
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 12 GGSNSCYSLSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLNHTANE 69
G S+ Y++SS D+NP T +VIA E + ++ D + NHT+NE
Sbjct: 141 GKSDGGYAVSSYRDVNPALGTIG---DLREVIAALH----EAGISAVVDFIFNHTSNE 191
>pdb|1HP0|A Chain A, Crystal Structure Of An Inosine-Adenosine-Guanosine-
Preferring Nucleoside Hydrolase From Trypanosoma Vivax
In Complex With The Substrate Analogue 3-Deaza-Adenosine
pdb|1HP0|B Chain B, Crystal Structure Of An Inosine-Adenosine-Guanosine-
Preferring Nucleoside Hydrolase From Trypanosoma Vivax
In Complex With The Substrate Analogue 3-Deaza-Adenosine
pdb|1HOZ|A Chain A, Crystal Structure Of An
Inosine-Adenosine-Guanosine-Preferring Nucleoside
Hydrolase From Trypanosoma Vivax
pdb|1HOZ|B Chain B, Crystal Structure Of An
Inosine-Adenosine-Guanosine-Preferring Nucleoside
Hydrolase From Trypanosoma Vivax
pdb|2FF1|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase Soaked With Immucillinh
pdb|2FF1|B Chain B, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase Soaked With Immucillinh
pdb|2FF2|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase Co-Crystallized With Immucillinh
pdb|2FF2|B Chain B, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase Co-Crystallized With Immucillinh
Length = 339
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 20 LSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLN 64
L+ +D P+ + PE+ WD + A EK E Q L L D+V+N
Sbjct: 98 LAKNMDDMPILNIPENVELWDKIKAENEKY--EGQQL-LADLVMN 139
>pdb|4FLS|A Chain A, Crystal Structure Of Amylosucrase Inactive Double Mutant
F290k-E328q From Neisseria Polysaccharea In Complex With
Sucrose
Length = 628
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 12 GGSNSCYSLSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLNHTANE 69
G S+ Y++SS D+NP T +VIA E + ++ D + NHT+NE
Sbjct: 141 GKSDGGYAVSSYRDVNPALGTIG---DLREVIAALH----EAGISAVVDFIFNHTSNE 191
>pdb|1JGI|A Chain A, Crystal Structure Of The Active Site Mutant Glu328gln Of
Amylosucrase From Neisseria Polysaccharea In Complex
With The Natural Substrate Sucrose
Length = 628
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 12 GGSNSCYSLSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLNHTANE 69
G S+ Y++SS D+NP T +VIA E + ++ D + NHT+NE
Sbjct: 141 GKSDGGYAVSSYRDVNPALGTIG---DLREVIAALH----EAGISAVVDFIFNHTSNE 191
>pdb|3EPW|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase In Complex With The Inhibitor
(2r,3r,4s)-1-[(4-Hydroxy-5h-Pyrrolo[3,2-
D]pyrimidin-7-Yl)methyl]-2-(Hydroxymethyl)pyrrolidin-3,
4-Diol
pdb|3EPW|B Chain B, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase In Complex With The Inhibitor
(2r,3r,4s)-1-[(4-Hydroxy-5h-Pyrrolo[3,2-
D]pyrimidin-7-Yl)methyl]-2-(Hydroxymethyl)pyrrolidin-3,
4-Diol
pdb|3EPX|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase In Complex With The Inhibitor
(2r,3r,4s)-2-(Hydroxymethyl)-1-(Quinolin-8-
Ylmethyl)pyrrolidin-3,4-Diol
pdb|3EPX|B Chain B, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase In Complex With The Inhibitor
(2r,3r,4s)-2-(Hydroxymethyl)-1-(Quinolin-8-
Ylmethyl)pyrrolidin-3,4-Diol
Length = 338
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 20 LSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLN 64
L+ +D P+ + PE+ WD + A EK E Q L L D+V+N
Sbjct: 97 LAKNMDDMPILNIPENVELWDKIKAENEKY--EGQQL-LADLVMN 138
>pdb|4FLR|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290l From Neisseria Polysaccharea
Length = 628
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 12 GGSNSCYSLSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLNHTANE 69
G S+ Y++SS D+NP T +VIA E + ++ D + NHT+NE
Sbjct: 141 GKSDGGYAVSSYRDVNPALGTIG---DLREVIAALH----EAGISAVVDFIFNHTSNE 191
>pdb|4FLQ|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290i From Neisseria Polysaccharea
Length = 628
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 12 GGSNSCYSLSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLNHTANE 69
G S+ Y++SS D+NP T +VIA E + ++ D + NHT+NE
Sbjct: 141 GKSDGGYAVSSYRDVNPALGTIG---DLREVIAALH----EAGISAVVDFIFNHTSNE 191
>pdb|4FLO|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290c From Neisseria Polysaccharea
Length = 628
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 12 GGSNSCYSLSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLNHTANE 69
G S+ Y++SS D+NP T +VIA E + ++ D + NHT+NE
Sbjct: 141 GKSDGGYAVSSYRDVNPALGTIG---DLREVIAALH----EAGISAVVDFIFNHTSNE 191
>pdb|1G5A|A Chain A, Amylosucrase From Neisseria Polysaccharea
pdb|1JG9|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With D-glucose
pdb|1MW1|A Chain A, Amylosucrase Soaked With 14mm Sucrose.
pdb|1MW2|A Chain A, Amylosucrase Soaked With 100mm Sucrose
pdb|1MW3|A Chain A, Amylosucrase Soaked With 1m Sucrose
Length = 628
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 12 GGSNSCYSLSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLNHTANE 69
G S+ Y++SS D+NP T +VIA E + ++ D + NHT+NE
Sbjct: 141 GKSDGGYAVSSYRDVNPALGTIG---DLREVIAALH----EAGISAVVDFIFNHTSNE 191
>pdb|1KCU|H Chain H, Crystal Structure Of Antibody Pc287
pdb|1KC5|H Chain H, Crystal Structure Of Antibody Pc287 In Complex With Ps1
Peptide
Length = 217
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 33/72 (45%)
Query: 18 YSLSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLNHTANETYLSLNML 77
YS++S N + P +KL W I+++ + S I + + N+ +L LN +
Sbjct: 27 YSITSDYAWNWIRQFPGNKLEWMAYISYSGSTTYNPSLKSRISITRDTSKNQFFLQLNSV 86
Query: 78 SLCDIVLNHTAN 89
+ D + + A
Sbjct: 87 TTEDTAIYYCAR 98
>pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
pdb|2ECP|B Chain B, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
Length = 796
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 8/32 (25%)
Query: 25 DLNPLFSTPE--------HKLSWDDVIAFTEK 48
D +P + PE H++SWDD A T K
Sbjct: 307 DTHPTIAIPELLRVLIDEHQMSWDDAWAITSK 338
>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1QM5|B Chain B, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|A Chain A, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|B Chain B, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
Length = 796
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 8/32 (25%)
Query: 25 DLNPLFSTPE--------HKLSWDDVIAFTEK 48
D +P + PE H++SWDD A T K
Sbjct: 307 DTHPTIAIPELLRVLIDEHQMSWDDAWAITSK 338
>pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5V|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5W|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L6I|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|1L6I|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|2ASV|A Chain A, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2ASV|B Chain B, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2AV6|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AV6|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AZD|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
pdb|2AZD|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
Length = 796
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 8/32 (25%)
Query: 25 DLNPLFSTPE--------HKLSWDDVIAFTEK 48
D +P + PE H++SWDD A T K
Sbjct: 307 DTHPTIAIPELLRVLIDEHQMSWDDAWAITSK 338
>pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
pdb|1AHP|B Chain B, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
Length = 797
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 8/32 (25%)
Query: 25 DLNPLFSTPE--------HKLSWDDVIAFTEK 48
D +P + PE H++SWDD A T K
Sbjct: 308 DTHPTIAIPELLRVLIDEHQMSWDDAWAITSK 339
>pdb|1F90|H Chain H, Fab Fragment Of Monoclonal Antibody (Lnkb-2) Against
Human Interleukin-2 In Complex With Antigenic Peptide
pdb|1F8T|H Chain H, Fab (Lnkb-2) Of Monoclonal Antibody, Crystal Structure
Length = 220
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 32/72 (44%)
Query: 18 YSLSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLNHTANETYLSLNML 77
YS++S N + P +KL W I ++ + S I + + N+ +L LN +
Sbjct: 27 YSITSDYAWNWIRQFPGNKLEWMGYITYSGSTGYNPSLKSRISITRDTSKNQFFLQLNSV 86
Query: 78 SLCDIVLNHTAN 89
+ D + A+
Sbjct: 87 TTEDTATYYCAS 98
>pdb|1S5I|H Chain H, Fab (Lnkb-2) Of Monoclonal Antibody To Human
Interleukin-2, Crystal Structure
Length = 220
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 32/72 (44%)
Query: 18 YSLSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLNHTANETYLSLNML 77
YS++S N + P +KL W I ++ + S I + + N+ +L LN +
Sbjct: 27 YSITSDYAWNWIRQFPGNKLEWMGYITYSGSTGYNPSLKSRISITRDTSKNQFFLQLNSV 86
Query: 78 SLCDIVLNHTAN 89
+ D + A+
Sbjct: 87 TTEDTATYYCAS 98
>pdb|1F58|H Chain H, Igg1 Fab Fragment (58.2) Complex With 24-Residue Peptide
(Residues 308-333 Of Hiv-1 Gp120 (Mn Isolate) With Ala
To Aib Substitution At Position 323
pdb|2F58|H Chain H, Igg1 Fab Fragment (58.2) Complex With 12-Residue Cyclic
Peptide (Including Residues 315-324 Of Hiv-1 Gp120) (Mn
Isolate)
pdb|3F58|H Chain H, Igg1 Fab Fragment (58.2) Complex With 12-Residue Cyclic
Peptide (Including Residues 315-324 Of Hiv-1 Gp120 (Mn
Isolate); H315s Mutation
Length = 228
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 32/73 (43%)
Query: 18 YSLSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLNHTANETYLSLNML 77
YS++S + + P +KL W I ++ + S I + + N+ +L LN +
Sbjct: 27 YSITSGYSWHWIRQFPGNKLEWMGYIHYSAGTNYNPSLKSRISITRDTSKNQFFLQLNSV 86
Query: 78 SLCDIVLNHTANE 90
+ D + A E
Sbjct: 87 TTEDTATYYCARE 99
>pdb|32C2|B Chain B, Structure Of An Activity Suppressing Fab Fragment To
Cytochrome P450 Aromatase
Length = 218
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 33/76 (43%)
Query: 18 YSLSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLNHTANETYLSLNML 77
YS+SS N + P +KL W I+++ + S I + + N+ +L L+ +
Sbjct: 27 YSISSDYAWNWIRQFPGNKLEWMGYISYSGSTSYNPSLKSRISITRDTSKNQFFLQLSSV 86
Query: 78 SLCDIVLNHTANETFD 93
+ D + A +
Sbjct: 87 TTEDTATYYCARGYYG 102
>pdb|1BAF|H Chain H, 2.9 Angstroms Resolution Structure Of An
Anti-Dinitrophenyl- Spin-Label Monoclonal Antibody Fab
Fragment With Bound Hapten
Length = 217
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 30/66 (45%)
Query: 18 YSLSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLNHTANETYLSLNML 77
YS++S N + P +KL W ++++ R + S I + + N+ +L L +
Sbjct: 27 YSITSDYAWNWIRQFPGNKLEWMGYMSYSGSTRYNPSLRSRISITRDTSKNQFFLQLKSV 86
Query: 78 SLCDIV 83
+ D
Sbjct: 87 TTEDTA 92
>pdb|1VJV|A Chain A, Crystal Structure Of Ubiquitin Carboxyl-terminal Hydrolase
6 (yfr010w) From Saccharomyces Cerevisiae At 1.74 A
Resolution
Length = 415
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 5 IDSRLELGGSNSCYSLSSQLDLNPLFSTPEH 35
I+ R +L G+NS YS+ ++ P F T ++
Sbjct: 200 IEKRSDLTGANSIYSVEKKISRLPKFLTVQY 230
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,750,003
Number of Sequences: 62578
Number of extensions: 90319
Number of successful extensions: 275
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 243
Number of HSP's gapped (non-prelim): 45
length of query: 96
length of database: 14,973,337
effective HSP length: 62
effective length of query: 34
effective length of database: 11,093,501
effective search space: 377179034
effective search space used: 377179034
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)