BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1336
(96 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2PQH8|GDE_CANFA Glycogen debranching enzyme OS=Canis familiaris GN=AGL PE=2 SV=1
Length = 1533
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/57 (56%), Positives = 40/57 (70%)
Query: 11 LGGSNSCYSLSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLNHTA 67
LG S SCYSL++QL+LNP FS P K +W DV EKM+ EW +L + D+V NHTA
Sbjct: 166 LGLSRSCYSLANQLELNPDFSRPNKKYTWSDVGQLVEKMKKEWNVLCITDVVYNHTA 222
>sp|P35573|GDE_HUMAN Glycogen debranching enzyme OS=Homo sapiens GN=AGL PE=1 SV=3
Length = 1532
Score = 72.4 bits (176), Expect = 7e-13, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 41/57 (71%)
Query: 11 LGGSNSCYSLSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLNHTA 67
LG S SCYSL++QL+LNP FS P K +W+DV EK++ EW ++ + D+V NHTA
Sbjct: 166 LGLSRSCYSLANQLELNPDFSRPNRKYTWNDVGQLVEKLKKEWNVICITDVVYNHTA 222
>sp|P35574|GDE_RABIT Glycogen debranching enzyme OS=Oryctolagus cuniculus GN=AGL PE=1
SV=1
Length = 1555
Score = 72.0 bits (175), Expect = 9e-13, Method: Composition-based stats.
Identities = 31/57 (54%), Positives = 39/57 (68%)
Query: 11 LGGSNSCYSLSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLNHTA 67
LG S SCYSL+ QL+LNP FS P K +W DV EK++ EW +L + D+V NHTA
Sbjct: 189 LGLSRSCYSLADQLELNPDFSRPHKKYTWSDVGQLVEKLKREWNVLCITDVVYNHTA 245
>sp|A8BQB4|GDE_HORSE Glycogen debranching enzyme OS=Equus caballus GN=AGL PE=2 SV=1
Length = 1533
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 11 LGGSNSCYSLSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLNHTA 67
LG S S YSL+ QL+LNP FS P K +W DV EK++ EW +L + D+V NHTA
Sbjct: 166 LGLSRSSYSLADQLELNPDFSRPNKKYTWHDVGQLVEKLKKEWDILCITDVVYNHTA 222
>sp|Q06625|GDE_YEAST Glycogen debranching enzyme OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=GDB1 PE=1 SV=1
Length = 1536
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 10 ELGGSNSCYSLSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLNHTANE 69
E G SNS YS+ QL + EH S +DV E + + MLSL DIV NHTAN
Sbjct: 179 ERGESNSPYSIYDQLQFDQ-----EHFKSPEDVKNLVEHIHRDLNMLSLTDIVFNHTANN 233
Query: 70 T 70
+
Sbjct: 234 S 234
>sp|Q60B95|Y585_METCA UPF0061 protein MCA0585 OS=Methylococcus capsulatus (strain ATCC
33009 / NCIMB 11132 / Bath) GN=MCA0585 PE=3 SV=1
Length = 504
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 33 PEHKLSW-DDVIAFTEKMRTEWQMLSLCDIVLNHTANETYLSLNM 76
PE +W +VI T ++ +WQ+L C V+N T N + L L +
Sbjct: 227 PERHAAWLGEVIERTARLIAQWQLLGFCHGVMN-TDNFSVLGLTL 270
>sp|Q47BJ0|DXS_DECAR 1-deoxy-D-xylulose-5-phosphate synthase OS=Dechloromonas
aromatica (strain RCB) GN=dxs PE=3 SV=1
Length = 618
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 3 FIIDSRLELGG--SNSCYSLSSQLDLNPLFSTPEHKLSWD 40
F+IDS + GG S++ ++ + L+ +F+TPE +L WD
Sbjct: 34 FLIDSVSKTGGHLSSNLGTVELTIALHAVFNTPEDRLVWD 73
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,240,394
Number of Sequences: 539616
Number of extensions: 1122308
Number of successful extensions: 2575
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2562
Number of HSP's gapped (non-prelim): 16
length of query: 96
length of database: 191,569,459
effective HSP length: 66
effective length of query: 30
effective length of database: 155,954,803
effective search space: 4678644090
effective search space used: 4678644090
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)