RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1336
         (96 letters)



>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase
          {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
          Length = 653

 Score = 28.0 bits (62), Expect = 0.14
 Identities = 12/58 (20%), Positives = 17/58 (29%), Gaps = 7/58 (12%)

Query: 12 GGSNSCYSLSSQLDLNPLFSTPEHKLSWDDVIAFTEKMRTEWQMLSLCDIVLNHTANE 69
           GSN  Y +     +N             +     E       +  + DIV NH A  
Sbjct: 44 PGSNHGYDVIDHSRINDELGG------EKEYRRLIETAH-TIGLGIIQDIVPNHMAVN 94



 Score = 24.5 bits (53), Expect = 3.0
 Identities = 6/10 (60%), Positives = 6/10 (60%)

Query: 81 DIVLNHTANE 90
          DIV NH A  
Sbjct: 85 DIVPNHMAVN 94


>d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp.,
           ksm-k38 [TaxId: 1409]}
          Length = 390

 Score = 23.9 bits (50), Expect = 4.2
 Identities = 4/32 (12%), Positives = 11/32 (34%), Gaps = 1/32 (3%)

Query: 38  SWDDVIAFTEKMRTEWQMLSLCDIVLNHTANE 69
           +   +      ++    +    D+V+NH    
Sbjct: 79  TKAQLERAIGSLK-SNDINVYGDVVMNHKMGA 109


>d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon
           Pyrococcus woesei [TaxId: 2262]}
          Length = 361

 Score = 23.7 bits (50), Expect = 5.1
 Identities = 6/32 (18%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 38  SWDDVIAFTEKMRTEWQMLSLCDIVLNHTANE 69
           S ++++   +     + +  + D+V+NH A  
Sbjct: 85  SKEELVRLIQTAH-AYGIKVIADVVINHRAGG 115


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0490    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 336,380
Number of extensions: 11965
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 10
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.5 bits)