Query psy13360
Match_columns 1161
No_of_seqs 441 out of 3060
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 17:30:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13360.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13360hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gfh_A DNA topoisomerase 2; to 100.0 3E-163 9E-168 1562.7 27.0 538 344-919 4-589 (1177)
2 3nuh_B DNA gyrase subunit B; t 100.0 2E-124 7E-129 1049.0 33.8 410 748-1161 2-420 (420)
3 3lnu_A Topoisomerase IV subuni 100.0 2E-111 6E-116 975.0 30.5 385 344-757 21-408 (408)
4 1ei1_A DNA gyrase B, GYRB; ATP 100.0 6E-106 2E-110 934.2 33.7 388 345-753 2-390 (391)
5 1s16_A Topoisomerase IV subuni 100.0 5E-102 2E-106 901.7 34.3 382 345-752 3-387 (390)
6 1pvg_A DNA topoisomerase II; G 100.0 1.6E-98 5E-103 874.5 18.0 365 345-749 10-417 (418)
7 3k9f_C DNA topoisomerase 4 sub 100.0 6.1E-98 2E-102 790.1 18.7 242 753-1161 21-266 (268)
8 1kij_A DNA gyrase subunit B; t 100.0 8.2E-96 3E-100 851.6 29.5 387 346-754 2-390 (390)
9 1zxm_A TOPO IIA ATPase, DNA to 100.0 3.3E-94 1.1E-98 835.0 17.7 360 350-744 4-394 (400)
10 3m4i_A DNA gyrase subunit B; G 100.0 6.8E-93 2.3E-97 744.8 15.2 231 771-1161 11-242 (242)
11 3cwv_A DNA gyrase, B subunit, 100.0 7.6E-88 2.6E-92 776.9 23.9 349 355-742 9-363 (369)
12 2xkj_E Topoisomerase IV; type 100.0 9.4E-86 3.2E-90 797.4 17.8 258 734-1161 1-259 (767)
13 3l4j_A DNA topoisomerase 2; to 100.0 1.7E-73 5.9E-78 681.8 15.4 225 762-1154 3-239 (757)
14 3qx3_A DNA topoisomerase 2-bet 100.0 1.2E-73 4E-78 683.3 11.2 223 762-1154 33-268 (803)
15 2xcs_B DNA gyrase subunit B, D 100.0 3E-72 1E-76 672.0 12.1 201 761-1161 2-202 (692)
16 4duh_A DNA gyrase subunit B; s 100.0 5.3E-67 1.8E-71 561.5 12.7 217 345-577 3-220 (220)
17 4emv_A DNA topoisomerase IV, B 100.0 5.5E-66 1.9E-70 554.6 11.4 216 345-577 9-226 (226)
18 3t0p_A DNA polymerase III, bet 100.0 1.7E-57 5.8E-62 528.4 40.2 333 1-341 2-339 (371)
19 3p16_A DNA polymerase III subu 100.0 8.6E-57 2.9E-61 526.4 40.2 332 1-341 19-360 (408)
20 3d1g_A DNA polymerase III subu 100.0 1.3E-56 4.6E-61 520.6 40.6 335 1-341 1-338 (366)
21 2avt_A DNA polymerase III beta 100.0 5.8E-56 2E-60 517.4 42.4 335 1-341 2-348 (378)
22 3ttz_A DNA gyrase subunit B; p 100.0 2.4E-56 8.2E-61 472.4 10.7 193 347-579 2-198 (198)
23 1vpk_A DNA polymerase III, bet 100.0 1.1E-51 3.6E-56 482.4 42.6 334 1-341 13-349 (378)
24 3fv5_A DNA topoisomerase 4 sub 100.0 9.7E-55 3.3E-59 462.3 13.7 199 357-575 1-201 (201)
25 2q2e_B Type 2 DNA topoisomeras 100.0 6.1E-40 2.1E-44 398.5 -2.1 301 352-724 13-334 (621)
26 2zbk_B Type 2 DNA topoisomeras 99.9 3.4E-25 1.2E-29 266.3 0.4 285 351-693 6-310 (530)
27 3aiz_C DNA polymerase sliding 99.9 3.4E-22 1.1E-26 219.8 20.4 191 134-341 7-217 (246)
28 3na3_A DNA mismatch repair pro 99.9 9.8E-22 3.4E-26 224.0 19.5 287 350-701 7-314 (348)
29 1rwz_A DNA polymerase sliding 99.9 9.5E-22 3.2E-26 216.1 18.5 193 133-342 6-214 (245)
30 1b63_A MUTL; DNA mismatch repa 99.9 6.4E-22 2.2E-26 226.5 17.3 283 351-702 4-312 (333)
31 1ud9_A DNA polymerase sliding 99.9 2E-21 6.7E-26 213.6 18.3 191 134-342 7-217 (245)
32 2ijx_A DNA polymerase sliding 99.9 2.3E-21 7.7E-26 212.9 18.5 190 134-341 7-216 (244)
33 3h4l_A DNA mismatch repair pro 99.9 4.8E-21 1.7E-25 220.3 21.4 176 351-565 5-195 (367)
34 1iz5_A Proliferating cell nucl 99.9 3.7E-21 1.3E-25 211.9 19.5 191 134-341 9-219 (249)
35 3aiz_A DNA polymerase sliding 99.8 7.5E-21 2.6E-25 209.3 16.7 191 134-341 8-220 (248)
36 1vpk_A DNA polymerase III, bet 99.8 1.4E-19 4.7E-24 211.2 24.1 204 129-341 13-227 (378)
37 3k4x_A PCNA, proliferating cel 99.8 4.6E-19 1.6E-23 224.1 29.2 305 4-342 409-768 (798)
38 2zvv_A PCNA 1, proliferating c 99.8 1.4E-18 4.6E-23 194.4 20.2 190 134-341 28-247 (276)
39 1h7s_A PMS1 protein homolog 2; 99.8 6.7E-19 2.3E-23 203.3 15.1 289 350-701 13-342 (365)
40 1plq_A Proliferating cell nucl 99.8 9.6E-18 3.3E-22 185.6 19.6 190 134-341 8-227 (258)
41 3fds_D DNA polymerase sliding 99.7 2E-17 6.9E-22 181.6 19.5 192 134-342 8-218 (245)
42 1u7b_A PCNA, cyclin, prolifera 99.7 2.1E-17 7.3E-22 183.1 19.6 190 134-341 8-227 (261)
43 3ifv_A PCNA; processivity fact 99.7 1.6E-17 5.6E-22 182.6 16.5 194 132-341 5-215 (247)
44 1mu5_A Type II DNA topoisomera 99.7 4.2E-17 1.4E-21 194.1 17.0 181 351-565 7-209 (471)
45 3lx2_A DNA polymerase sliding 99.6 4.9E-15 1.7E-19 164.0 21.7 190 134-341 9-220 (259)
46 3k4x_A PCNA, proliferating cel 99.6 9E-13 3.1E-17 166.8 42.2 378 3-418 141-584 (798)
47 3p91_A Proliferating cell nucl 99.6 2E-14 6.7E-19 159.6 22.2 194 131-341 9-230 (265)
48 3p16_A DNA polymerase III subu 99.6 4.1E-14 1.4E-18 165.7 23.9 203 128-341 18-232 (408)
49 3t0p_A DNA polymerase III, bet 99.6 2.7E-14 9.3E-19 165.7 22.2 203 129-341 2-217 (371)
50 3d1g_A DNA polymerase III subu 99.6 1.1E-13 3.7E-18 160.6 24.4 173 130-307 2-181 (366)
51 2avt_A DNA polymerase III beta 99.6 1.7E-13 5.7E-18 159.7 22.8 169 129-302 2-183 (378)
52 3aiz_C DNA polymerase sliding 98.9 1.5E-07 5.2E-12 102.9 25.6 209 1-231 1-229 (246)
53 1iz5_A Proliferating cell nucl 98.9 9.3E-07 3.2E-11 96.8 28.6 209 1-231 1-231 (249)
54 1rwz_A DNA polymerase sliding 98.7 2.3E-06 7.7E-11 93.5 25.8 207 1-230 1-224 (245)
55 2zvv_A PCNA 1, proliferating c 98.7 4.5E-06 1.5E-10 92.9 28.3 197 8-226 28-253 (276)
56 2ijx_A DNA polymerase sliding 98.7 2.2E-06 7.4E-11 93.6 24.7 202 7-231 6-228 (244)
57 3fds_D DNA polymerase sliding 98.6 5.4E-06 1.9E-10 90.6 25.8 202 7-230 7-228 (245)
58 3aiz_A DNA polymerase sliding 98.6 3.1E-06 1.1E-10 92.5 23.3 189 29-231 20-232 (248)
59 3lx2_A DNA polymerase sliding 98.6 1.2E-05 4.2E-10 88.5 28.0 204 1-226 1-226 (259)
60 1ud9_A DNA polymerase sliding 98.6 2.2E-06 7.4E-11 93.6 20.2 201 8-231 7-228 (245)
61 1plq_A Proliferating cell nucl 98.5 4.4E-05 1.5E-09 83.8 29.5 202 8-231 8-239 (258)
62 1u7b_A PCNA, cyclin, prolifera 98.5 6.7E-05 2.3E-09 82.5 29.4 201 8-230 8-238 (261)
63 2ior_A Chaperone protein HTPG; 98.5 2.3E-07 7.8E-12 100.8 8.8 144 379-552 49-221 (235)
64 3t0h_A Heat shock protein HSP 98.5 2.6E-07 8.9E-12 99.5 9.1 159 377-566 32-216 (228)
65 2wer_A ATP-dependent molecular 98.5 5.3E-07 1.8E-11 97.0 11.1 162 377-566 26-211 (220)
66 3fds_C DNA polymerase sliding 98.4 2.8E-05 9.4E-10 85.2 22.2 192 132-341 5-221 (249)
67 3o0i_A HSP90AA1 protein; HSP90 98.4 6.8E-07 2.3E-11 97.4 9.0 158 378-566 61-244 (256)
68 3p91_A Proliferating cell nucl 98.4 0.00012 4E-09 81.0 27.2 198 8-226 13-236 (265)
69 3ifv_A PCNA; processivity fact 98.3 4.4E-05 1.5E-09 83.4 21.6 197 6-226 5-221 (247)
70 1yc1_A HSP 86, heat shock prot 98.3 1.9E-06 6.6E-11 94.8 9.5 161 378-567 69-253 (264)
71 2gqp_A Endoplasmin; GRP94, HSP 98.2 1.9E-06 6.5E-11 93.5 9.2 161 377-566 32-221 (236)
72 2ioq_A Chaperone protein HTPG; 98.2 5.7E-06 2E-10 101.0 13.1 154 378-560 28-210 (624)
73 1y4s_A Chaperone protein HTPG; 98.2 7.4E-06 2.5E-10 98.8 13.3 154 378-560 28-210 (559)
74 3nmq_A Heat shock protein HSP 98.1 5.8E-06 2E-10 89.2 8.5 172 378-576 40-233 (239)
75 3peh_A Endoplasmin homolog; st 98.0 2.6E-05 8.9E-10 85.8 11.2 163 377-567 46-233 (281)
76 1qy5_A Endoplasmin; GRP94, NEC 97.9 1.2E-05 4.1E-10 88.6 7.0 162 378-566 29-217 (269)
77 3fds_C DNA polymerase sliding 97.7 0.0091 3.1E-07 65.1 26.5 198 8-226 8-227 (249)
78 2cg9_A ATP-dependent molecular 97.7 0.00014 4.8E-09 89.3 12.8 157 379-562 28-207 (677)
79 2o1u_A Endoplasmin; GRP94, HSP 97.7 0.00012 4.2E-09 89.7 11.3 158 378-564 46-232 (666)
80 1th8_A Anti-sigma F factor; SP 97.5 0.00016 5.6E-09 71.5 7.4 93 377-491 39-136 (145)
81 3ied_A Heat shock protein; HSP 97.3 0.00039 1.3E-08 75.1 8.2 129 400-552 120-260 (272)
82 3jz3_A Sensor protein QSEC; he 97.2 0.00024 8.1E-09 74.8 4.7 78 377-476 117-194 (222)
83 3a1j_A Cell cycle checkpoint c 97.1 0.019 6.5E-07 63.2 19.1 213 1-232 1-252 (266)
84 3a0y_A Sensor protein; ATP-LID 97.1 0.0013 4.4E-08 64.9 8.6 74 377-474 47-123 (152)
85 1gkz_A [3-methyl-2-oxobutanoat 97.0 0.00067 2.3E-08 78.8 6.3 89 376-476 237-350 (388)
86 1id0_A PHOQ histidine kinase; 96.9 0.002 7E-08 63.5 8.6 77 376-476 43-122 (152)
87 1r62_A Nitrogen regulation pro 96.9 0.0012 4.1E-08 65.6 6.3 76 377-475 48-136 (160)
88 1bxd_A ENVZ(290-450), protein 96.8 0.0011 3.8E-08 66.5 5.7 78 377-476 47-127 (161)
89 1ysr_A Sensor-type histidine k 96.8 0.001 3.5E-08 65.7 5.3 79 376-476 45-126 (150)
90 3a1j_C Cell cycle checkpoint p 96.7 0.26 9E-06 53.9 24.6 199 8-226 11-237 (263)
91 3zxo_A Redox sensor histidine 96.7 0.002 6.9E-08 61.8 6.7 43 377-422 43-87 (129)
92 2c2a_A Sensor histidine kinase 96.7 0.0018 6.2E-08 70.1 6.8 84 376-475 137-224 (258)
93 3sl2_A Sensor histidine kinase 96.6 0.0028 9.4E-08 64.6 7.2 81 377-475 43-128 (177)
94 2e0a_A Pyruvate dehydrogenase 96.6 0.0017 5.8E-08 75.6 5.6 88 377-476 230-327 (394)
95 2btz_A Pyruvate dehydrogenase 96.5 0.0015 5E-08 76.2 4.8 89 376-476 230-327 (394)
96 3ehg_A Sensor kinase (YOCF pro 96.5 0.0054 1.9E-07 59.1 8.1 44 377-423 40-86 (128)
97 2q8g_A [pyruvate dehydrogenase 96.5 0.0025 8.7E-08 74.5 6.3 88 377-476 243-340 (407)
98 1y8o_A [pyruvate dehydrogenase 96.3 0.002 6.9E-08 75.7 4.5 88 377-476 253-351 (419)
99 3g65_A Cell cycle checkpoint c 96.3 0.15 5E-06 57.0 19.1 215 1-233 1-253 (296)
100 3zxq_A Hypoxia sensor histidin 96.3 0.0057 1.9E-07 58.3 6.5 44 377-423 39-84 (124)
101 3a1j_A Cell cycle checkpoint c 96.2 0.074 2.5E-06 58.4 16.2 167 157-330 23-223 (266)
102 3a0r_A Sensor protein; four he 96.0 0.0041 1.4E-07 70.1 4.7 74 377-474 244-320 (349)
103 4ew8_A Sensor protein DIVL; si 96.0 0.0075 2.6E-07 65.4 6.6 76 377-476 155-233 (268)
104 3a1j_C Cell cycle checkpoint p 96.0 0.14 4.7E-06 56.1 16.7 178 134-330 11-217 (263)
105 3d36_A Sporulation kinase B; G 95.9 0.0071 2.4E-07 64.3 5.7 77 376-475 122-201 (244)
106 1i58_A Chemotaxis protein CHEA 95.9 0.0034 1.2E-07 64.6 3.0 47 378-424 48-107 (189)
107 3ehh_A Sensor kinase (YOCF pro 95.8 0.012 4E-07 61.8 7.0 43 378-423 131-176 (218)
108 1b77_A GP45, protein (sliding 95.4 1 3.5E-05 47.6 19.5 203 1-238 1-218 (228)
109 3ke6_A Protein RV1364C/MT1410; 95.2 0.032 1.1E-06 65.0 8.5 85 377-494 297-386 (399)
110 1b3q_A Protein (chemotaxis pro 94.0 0.039 1.3E-06 63.8 5.1 48 378-425 107-167 (379)
111 3a1j_B HHUS1, checkpoint prote 93.6 2.6 8.9E-05 46.4 18.7 208 1-226 2-260 (281)
112 4fpp_A Phosphotransferase; fou 91.9 0.12 4.1E-06 55.8 4.9 45 378-424 147-194 (247)
113 3g65_A Cell cycle checkpoint c 90.5 5.5 0.00019 44.2 16.7 138 158-301 24-183 (296)
114 3a1j_B HHUS1, checkpoint prote 81.0 23 0.00078 38.8 15.1 167 159-334 29-245 (281)
115 1ixm_A SPO0B, protein (sporula 67.3 5.6 0.00019 41.2 5.3 43 384-426 115-163 (192)
116 2zbk_B Type 2 DNA topoisomeras 49.0 62 0.0021 38.7 10.7 86 611-711 349-440 (530)
117 1t6t_1 Putative protein; struc 27.9 19 0.00065 34.3 1.2 26 851-876 60-86 (118)
118 2q2e_B Type 2 DNA topoisomeras 23.0 3.6E+02 0.012 32.8 11.5 82 612-704 353-440 (621)
119 3hqc_A Tensin-like C1 domain-c 20.8 89 0.003 31.1 4.5 50 367-420 19-72 (157)
No 1
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-163 Score=1562.73 Aligned_cols=538 Identities=24% Similarity=0.372 Sum_probs=448.8
Q ss_pred ccccCcchhhccccccceeeccceEEeecCCC----------------------CccchhHHhHHHhhHhhhcCCC-CCe
Q psy13360 344 ESSYSASSIQILEGLEAVRKRPEMYIGDTSDG----------------------TGLHHFVFEILDNAIDESLAGY-CTK 400 (1161)
Q Consensus 344 ~~~y~~~~i~~L~~~e~vrkRP~mYiGs~~~~----------------------~gl~hlv~EivdNsiDe~~~g~-~~~ 400 (1161)
+..|.++.||+|+||||||||||||||||+.. +|||||||||||||+||++||+ |+.
T Consensus 4 ~~~~~~~~yq~L~~LE~VrkRPgMYIGst~~~~~~~~v~~~~~~~~~~~~vt~v~GL~hl~~EildNsiDea~ag~~~~~ 83 (1177)
T 4gfh_A 4 EPVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKR 83 (1177)
T ss_dssp ---CHHHHSEECCHHHHHHHCGGGTTCCCSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCE
T ss_pred CCCchhhcccccccchhhhcCCCCccccCCCCCcceeeeeccccccccccccccceeeeEeeEEEEChHhHHhhCCCCCe
Confidence 34567778999999999999999999999873 3999999999999999999997 699
Q ss_pred EEEEEec-CCcEEEEECCCccccccccCCCCCCCCcceEEEEeeecccCCCCCCceeeecccccchhhHhhhhccEEEEE
Q psy13360 401 INVTIYS-DNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLT 479 (1161)
Q Consensus 401 I~V~i~~-dgsisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t~l~ag~kfd~~~yk~sgGlhGvG~svvNalS~~~~V~ 479 (1161)
|+|+||. ||||+|+||||||||++||+ +|+|+||+|||+||||||||+++|++||||||||+|||||||+||.|+
T Consensus 84 I~V~i~~~d~sisV~DnGRGIPvd~h~~----~~~~~~Evv~t~LhAGgKFd~~~ykvSGGLHGVG~svVNALS~~~~ve 159 (1177)
T 4gfh_A 84 IDVNIHAEEHTIEVKNDGKGIPIEIHNK----ENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILE 159 (1177)
T ss_dssp EEEEEETTTTEEEEEECSSCCCCSBCTT----TCSBHHHHHHHSSSEESCCCCSSCCCCSCCSSCHHHHHHHTEEEEEEE
T ss_pred EEEEEECCCCEEEEEecCCcccccccCC----CCCEeeeeeccccccccCcCCCCCeEeccCCChhhhHHhhcCCceEEE
Confidence 9999995 99999999999999999999 999999999999999999999999999999999999999999999998
Q ss_pred EE--eCCEEEEEEEEcCccccccccccCCccccCcEEecc--CCCCCcEEEEEeCccccccCCCCHHHHHHHHHhhhccC
Q psy13360 480 IN--RNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGD--TNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLN 555 (1161)
Q Consensus 480 v~--r~g~~~~q~f~~G~~~~~~~~~~~~~~~~~~~~~g~--~~~~GT~V~F~PD~~iF~~~~~~~~~l~~Rl~elA~ln 555 (1161)
|+ |+|+.|+|+|++| .++.++..++. ..++||+|+||||++||++..|+++++..|++++|+||
T Consensus 160 v~~~r~Gk~y~q~f~~g------------~~~~~~~~i~~~~~~~tGT~V~F~PD~~iF~~~~~~~d~l~~~~r~~~~l~ 227 (1177)
T 4gfh_A 160 TADLNVGQKYVQKWENN------------MSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDIN 227 (1177)
T ss_dssp EEETTTTEEEEEEEETT------------TTEECCCEEEECCSSCCCEEEEEEECHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCEEEEEEEECC------------cccCCCCeeecCCCCCCceEEEEEeCHHhcCCcEeCHHHHHHHHHHHHHhc
Confidence 85 8999999999999 44444444443 34689999999999999999999999999999999987
Q ss_pred C---CcEEEEeecccceEEEEEeCCchhhhhhhhhcCCcccCCc-------eEEEeeccccccCCceEEEEEEeecCCCc
Q psy13360 556 N---GVCITLIDERIKKKEIFEFKGGTSGFVSYINKSKLVVHPT-------IFQAIGNKISEKKNNINIDVSMQWNNSYN 625 (1161)
Q Consensus 556 p---gl~i~l~d~r~~~~~~f~~~~Gi~~fv~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~veva~~~~~~~~ 625 (1161)
+ ++.+.+++++. ..++|++|+.+|+++++..+...+.. +..+..+. .+..||||++|++++.
T Consensus 228 ~~~~~~~~~~~g~~~---~~~~f~~gi~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~e~-----~~~~~eva~~~~d~~~ 299 (1177)
T 4gfh_A 228 GSVRDINVYLNGKSL---KIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYER-----INNRWEVAFAVSDISF 299 (1177)
T ss_dssp HHSSSCEEEESSCBC---CCCSHHHHHGGGTTTC-----------------CCSCEEEE-----EETTEEEEEEECSSSC
T ss_pred CCCceEEEEecCCee---EEeeccchhhhhhhhhccceeccccccccccCCCceEEEEe-----ccceEEEeecccCCcc
Confidence 5 46788888764 35789999999999988665433321 11112222 3456999999998775
Q ss_pred ceeeeeecccccCCCCchhHHHHHHHHHHHHHHHHHhcccccccccCChhhHhcceEEEEEEeecCCCcccccccccccc
Q psy13360 626 ENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSS 705 (1161)
Q Consensus 626 e~~~SFvN~I~T~~GGtHv~g~~~alt~~in~~~~~~~l~Kk~~~~~~~~diregL~~vvsv~i~~P~FegQTK~kL~n~ 705 (1161)
+ ++||||||+|++||||++||++||+++||+|+.+ +++.+++++|||+||++||||+++||||+||||+||+|+
T Consensus 300 ~-~~SFvN~I~T~~GGTHv~gfr~altr~in~~~~k-----~~~~~~~~~DIregl~avISvki~~PqFegQTK~kL~s~ 373 (1177)
T 4gfh_A 300 Q-QISFVNSIATTMGGTHVNYITDQIVKKISEILKK-----KKKKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTR 373 (1177)
T ss_dssp E-EEEEESSCEETTEEHHHHHHHHHHHHHHHHHHHH-----HSSSCCCHHHHHTTEEEEEEECCSSCCBSSTTCCEECCC
T ss_pred e-eeeeeeeeecCCCchHHHHHHHHHHHHHHHHhhh-----hccccCCHHHHhCCceEEEEeeeccCccccchhhhhcCc
Confidence 4 5799999999999999999999999999999854 334679999999999999999999999999999999998
Q ss_pred cccchhHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccCccccCC---CCCCCcceE
Q psy13360 706 EVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDDIELSTKLADCQ---EKNPELCEL 782 (1161)
Q Consensus 706 ~v~~~v~~~v~~~l~~~l~~n~~~~~~i~~~~~~~~~ar~aa~~a~~~~r~k~~~~~~~lpgKl~dc~---~~~~~~~eL 782 (1161)
.........+. ..|+. +...+.|+++++++|++|+++++++...++|+.+ .++| ||+||+ ++||++|||
T Consensus 374 ~~~~~~~~~~~---~~~~~--~~~~~~i~~~~~~~a~~~~~~~~~k~~~~~k~~~--~~~~-KL~d~~~~~skd~~~~EL 445 (1177)
T 4gfh_A 374 VKDFGSRCEIP---LEYIN--KIMKTDLATRMFEIADANEENALKKSDGTRKSRI--TNYP-KLEDANKAGTKEGYKCTL 445 (1177)
T ss_dssp GGGSSSCCCCC---HHHHH--HHTTSHHHHHHHHHHTTCC------------CCC--CSCT-TCBCCTTTTTTTTTTCEE
T ss_pred hhcceeeccch---HHHhh--hhhhHHHHHHHHHHHHHHHHHHHHhhhhhcchhh--cccc-ccccccccCCCCccceEE
Confidence 55433322221 12222 2223468888898888877666666555555543 3344 898887 689999999
Q ss_pred EEEeccCCCccccccc---CCcceEeeccCCccccccccchhHHhccHhHHHHHHHhCCCCCCCCCcccccccceEEEee
Q psy13360 783 YIVEGDSAGGSVKQGR---DRRFQAVLPLRGKVLNIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMT 859 (1161)
Q Consensus 783 ~ivEGDSA~gsak~gr---dr~~qailPLrGKilNv~ka~~~ki~~n~Ei~~l~~alG~~~~~~~~~~~~lRY~kiiimt 859 (1161)
|||||||||||||+|| +|+|||||||||||||||||+.+||++|+||++|++|||||+|.+.+|+++||||||||||
T Consensus 446 fiVEGDSAgGsAk~Grak~~Rd~QAIlPLRGKiLNv~ka~~~kil~N~EI~~ii~alG~g~g~~~~d~~~LRY~KIiIMT 525 (1177)
T 4gfh_A 446 VLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMT 525 (1177)
T ss_dssp EEEEHHHHHHHHHHHHHHHCSTTEEEEEECSSCCCCTTCCHHHHHHCHHHHHHHHHTTCCCSSCCCCGGGSSCSEEEEEC
T ss_pred EEecCCchhhhHhhcccccCcccEEecccCceechhhhhHHHHHhhcHHHHHHHHHhCCCcCcccCccccCCCCeEEEee
Confidence 9999999999999999 8999999999999999999999999999999999999999999655599999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHhcHhhhh-cCcEEEEcCcEEEEEeCC---cceeecCHHHHHHHHH
Q psy13360 860 DADIDGAHIRALLLTFFYRKMPKLIE-YGYIYIAQPPLYKIKYGN---NECYLRDDIEEERYML 919 (1161)
Q Consensus 860 DaD~DG~HI~~Llltff~~~~p~Li~-~g~v~~~~~Pl~kv~~gk---~~~y~~~~~e~~~~~~ 919 (1161)
||||||+|||||||||||||||+||+ +||||+|+||||||+.|| ...|||+++|+++|..
T Consensus 526 DADvDGsHIrtLLltfF~r~~p~Lie~~G~vyia~pPLykv~~~k~~k~~~~~y~~~e~e~~~~ 589 (1177)
T 4gfh_A 526 DQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWRE 589 (1177)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSTTSTTSTTCEEEECCCSEEEEECSSSCCEEEESSHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHhChhhEeeCCEEEEEecceEEEEEecCCcceEEEechHHHHHHHH
Confidence 99999999999999999999999999 899999999999998654 4579999999999964
No 2
>3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.9e-124 Score=1048.97 Aligned_cols=410 Identities=44% Similarity=0.773 Sum_probs=324.5
Q ss_pred HHhhhhhhcccccccccccCccccCCCCCCCcceEEEEeccCCCcccccccCCcceEeeccCCccccccccchhHHhccH
Q psy13360 748 RKTRELTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSE 827 (1161)
Q Consensus 748 ~~a~~~~r~k~~~~~~~lpgKl~dc~~~~~~~~eL~ivEGDSA~gsak~grdr~~qailPLrGKilNv~ka~~~ki~~n~ 827 (1161)
-+||+++|||++++.++|||||+||+++||+.|||||||||||||||||||||+||||||||||||||+|++.+||++|+
T Consensus 2 ~~are~~rrk~~~~~~~lpgKLaDc~~kd~~~~eLflvEGDSAgGsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~n~ 81 (420)
T 3nuh_B 2 NAAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 81 (420)
T ss_dssp ----------------CCBTTBBCCSCCSTTSCEEEEEEHHHHHHHHHHHSCTTTEEEEEECC-------------CCCH
T ss_pred cHHHHHHHhhcccccCCCCccccccccCCccceeEEEEeccccccccccccccccccccccCCcchhHhhccHHHHhcCH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhCCCCCCCCCcccccccceEEEeecCCCCChhhHHHHHHHHHHhcHhhhhcCcEEEEcCcEEEEEeCCccee
Q psy13360 828 QITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECY 907 (1161)
Q Consensus 828 Ei~~l~~alG~~~~~~~~~~~~lRY~kiiimtDaD~DG~HI~~Llltff~~~~p~Li~~g~v~~~~~Pl~kv~~gk~~~y 907 (1161)
||++||+|||||+|+++||+++||||||||||||||||+|||||||||||||||+||++||||+|+||||||++||++.|
T Consensus 82 Ei~~ii~alG~~~g~~~~~~~~LRY~kIiIMTDaDvDGsHIr~LLltff~r~~p~Li~~G~vyia~pPL~kv~~gk~~~y 161 (420)
T 3nuh_B 82 EVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQY 161 (420)
T ss_dssp HHHHHHHHHC-------------CCSEEEECCCSSTTTTHHHHHHHHHHHHHCHHHHHTTCEEEECCCSEEEEETTEEEE
T ss_pred HHHHHHHHhCCCCCcCCCChhhcCcCeEEEecCCCCCcccchhHHHHHHHHHhHHHHHCCcEEEecCceEEEEcCCeEEE
Confidence 99999999999999778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCHHHHHHHHHHhcccceEEEEcCCCcccChHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHhcccCC---cCChHH
Q psy13360 908 LRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILN---LDTREN 984 (1161)
Q Consensus 908 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 984 (1161)
||||+|+++|+.+.++++++++...++..++|++|.+++..+..++.++++++++++..++++++..+.+. +.+++.
T Consensus 162 ~~~~~e~~~~~~~~al~~~~l~~~~~~~~~~g~~L~~l~~~~~~~~~~i~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 241 (420)
T 3nuh_B 162 IKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQT 241 (420)
T ss_dssp ECCHHHHHHHHHHHHHTTEEEEESSSCSEEEHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHSCCCCHHHHHCHHH
T ss_pred eCCHHHHHHHHhhccccCeEEEeCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHhcccCChhhhcCHHH
Confidence 99999999999999999999998888889999999999999999999999999999999999999888776 677888
Q ss_pred HHHHHHHHHHHhcc-----CceEEEEEeecccceEEEEEEEe-ecceeeEEecccccCCHHHHHHHHHHHHHHhhhcCCe
Q psy13360 985 AEQFAKKIIKKLND-----SNIEIIVEFDQLNNKYLLNIKKK-FLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGV 1058 (1161)
Q Consensus 985 ~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1058 (1161)
+.+|++.+..++.. ..|.+.+..+++...+.+.+.+. +|....+.++.+|++|++|+++..+++.+.++++.++
T Consensus 242 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~~~~~~l~~~~~~s~ey~~l~~~~~~l~~~~~~~~ 321 (420)
T 3nuh_B 242 VTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDA 321 (420)
T ss_dssp HHHHHHHHHHHHHHHCCSSCEEEEEEEECC---CEEEEEEEECSSSEEEEECCHHHHHSHHHHHHHHHHHHHHHTTTTSE
T ss_pred HHHHHHHHHHHhhhccccccceEEEEeecccCcceeEEEEEEecCcceEEEEChHHhcCHHHHHHHHHHHHHHHhhcCCc
Confidence 89999998887642 24776665554555566666655 4988889999999999999999999999999999888
Q ss_pred EEEeccccccceeeecCHHHHHHHHHHhccCCceeeEEecCCCCChhhhhhhccCcCceeEEEeeeccHHHHHHHHHHhc
Q psy13360 1059 IIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLM 1138 (1161)
Q Consensus 1059 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iqr~KGLGEmn~~qlwettm~p~~r~l~~v~~~d~~~a~~~~~~lm 1138 (1161)
.+.++ + +..++.++.++++||++.+++|++||||||||||||||||||||||++|+||||+|+||++||++|++||
T Consensus 322 ~i~~~--~--~~~~v~~~~~~~~~l~~~~~kG~~IQRYKGLGEMNpeQLWETTMdP~~R~LLqV~IeDa~~AD~iFt~LM 397 (420)
T 3nuh_B 322 FIERG--E--RRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLM 397 (420)
T ss_dssp EEEES--S--CEEEESSHHHHHHHHHHHHTTTCEEEECSCGGGSCHHHHHHHHTCTTTCCEEECCHHHHHHHHHHHHHHC
T ss_pred EEEeC--C--cceecCCHHHHHHHHHHHhhccceeeeeccCCCCChhhhhhcccCcccceEEEEEehhHHHHHHHHHHhc
Confidence 88887 4 5778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhhcccccCCC
Q psy13360 1139 GDNVELRRKFIELNALHAKNIDI 1161 (1161)
Q Consensus 1139 g~~v~~Rr~fi~~~a~~~~~ld~ 1161 (1161)
||+|||||+||++||++|+||||
T Consensus 398 GD~VEPRR~FIe~NAL~V~nLDi 420 (420)
T 3nuh_B 398 GDAVEPRRAFIEENALKAANIDI 420 (420)
T ss_dssp SCC--------------------
T ss_pred CCCchHhHHHHHhhhcccccCCC
Confidence 99999999999999999999997
No 3
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=100.00 E-value=1.7e-111 Score=975.04 Aligned_cols=385 Identities=33% Similarity=0.596 Sum_probs=325.9
Q ss_pred ccccCcchhhccccccceeeccceEEeecCCCCccchhHHhHHHhhHhhhcCCCCCeEEEEEecCCcEEEEECCCccccc
Q psy13360 344 ESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPID 423 (1161)
Q Consensus 344 ~~~y~~~~i~~L~~~e~vrkRP~mYiGs~~~~~gl~hlv~EivdNsiDe~~~g~~~~I~V~i~~dgsisV~DnGrGIPv~ 423 (1161)
+..|++++|++|+||||||||||||||||+. |||||||||||+||++||+|+.|.|+|+.||+|+|+|||||||++
T Consensus 21 ~~~Y~a~~I~vL~glE~VRkRPgMYiGst~~----~hlv~EivdNsiDea~ag~~~~I~V~i~~dgsI~V~DnGrGIPv~ 96 (408)
T 3lnu_A 21 NTRYNAADIEVLSGLDPVKRRPGMYTDTARP----NHLAQEVIDNSVDEALAGHAKQIEVTLYKDGSCEVSDDGRGMPVD 96 (408)
T ss_dssp -------------CCHHHHHCGGGTSCTTST----HHHHHHHHHHHHHHHHTTSCCEEEEEECTTSCEEEEECSSCCCCS
T ss_pred cCCcCHhHceeccccHHHhcCCccEECCCCc----chhhHHHHHHHHHHhhcCCCceEEEEEeCCCeEEEEEcCCCCCcc
Confidence 3579999999999999999999999999874 999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcceEEEEeeecccCCCCCCceeeecccccchhhHhhhhccEEEEEEEeCCEEEEEEEEcCccccccccc
Q psy13360 424 IKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKT 503 (1161)
Q Consensus 424 ~~~~~~~~~~~~~~e~v~t~l~ag~kfd~~~yk~sgGlhGvG~svvNalS~~~~V~v~r~g~~~~q~f~~G~~~~~~~~~ 503 (1161)
+||+ +|+|++|+|||+||||||||+++|++||||||||+|||||||+||+|+++|+|+.|+|+|++|
T Consensus 97 ~h~~----~~~~~~e~i~t~lhaggKfd~~~ykvSgGlhGvG~svVNALS~~l~v~v~rdGk~~~q~f~~G--------- 163 (408)
T 3lnu_A 97 IHPE----EKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVNALSTKVELFIKREGSEHRMEFRDG--------- 163 (408)
T ss_dssp BCTT----TCSBHHHHHHHCC--------------------CHHHHHHTEEEEEEEEEETTEEEEEEEETT---------
T ss_pred cccc----cCCcchheEEEecccCCCcCCCceeecCCccccccceehhccCeEEEEEEECCEEEEEEECCC---------
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccCcEEeccC--CCCCcEEEEEeCccccccCCCCHHHHHHHHHhhhccCCCcEEEEeecccceEEEEEeCCchhh
Q psy13360 504 INGISVSPIKIIGDT--NKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSG 581 (1161)
Q Consensus 504 ~~~~~~~~~~~~g~~--~~~GT~V~F~PD~~iF~~~~~~~~~l~~Rl~elA~lnpgl~i~l~d~r~~~~~~f~~~~Gi~~ 581 (1161)
.|+.|+.++|.+ .++||+|+||||+++|++..|++++|.+|||++|||||||+|+|+|+|.++++.|+|++||++
T Consensus 164 ---~~~~~l~~ig~~~~~~~GT~V~F~PD~~iF~~~~f~~~~l~~rlrelA~Ln~Gv~I~l~der~~~~~~f~yegGi~~ 240 (408)
T 3lnu_A 164 ---NAASKLEVVGTVGKKNTGTRLRFWADPKYFDTPKFNVRALRHLLRAKAVLCPGLTVKLHDEATGEQDSWYFENGLRD 240 (408)
T ss_dssp ---EECSCCEEEEECCTTCCEEEEEEEECGGGSSCSCCCHHHHHHHHHHHHHHSTTCEEEEEETTTCCEEEEECSSSHHH
T ss_pred ---EECCCceEeccCcCCCCCcEEEEEECHHHhCCCCcCHHHHHHHHHHHHhhcCCCEEEEEeccCCceeEEEcCchHHH
Confidence 788888888866 479999999999999999999999999999999999999999999999888889999999999
Q ss_pred hhhhhhcCCcccCCceEEEeeccccccCCc-eEEEEEEeecCCCcceeeeeecccccCCCCchhHHHHHHHHHHHHHHHH
Q psy13360 582 FVSYINKSKLVVHPTIFQAIGNKISEKKNN-INIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIE 660 (1161)
Q Consensus 582 fv~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~veva~~~~~~~~e~~~SFvN~I~T~~GGtHv~g~~~alt~~in~~~~ 660 (1161)
|+++++.+++++++.++ +.++. ++ +.||||+||+++|+++++||||||+|++||||++||++|||++||+|++
T Consensus 241 yv~~l~~~k~~~~~~~~-~~~~~-----~~~~~ve~Al~~~~~~~e~~~SFvN~I~T~~GGTH~~gfr~altr~in~y~~ 314 (408)
T 3lnu_A 241 YLKGEMAEHEMLPADLF-VGSLK-----KDTEIVDWAAGWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCD 314 (408)
T ss_dssp HHHHHTTTSCCEEEEEE-EEEEE-----CSSCEEEEEEEECSSSCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCCCCCe-EeeEe-----cCceeEEEEEEEcCCCCeEEEEEeCCcCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999988877776554 44554 55 8999999999999999999999999999999999999999999999999
Q ss_pred HhcccccccccCChhhHhcceEEEEEEeecCCCcccccccccccccccchhHHHHHHHHHHHHhhCchhHHHHHHHHHHH
Q psy13360 661 ENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEA 740 (1161)
Q Consensus 661 ~~~l~Kk~~~~~~~~diregL~~vvsv~i~~P~FegQTK~kL~n~~v~~~v~~~v~~~l~~~l~~n~~~~~~i~~~~~~~ 740 (1161)
+.+++|++ .+++++||||||++||||+++||||+||||+||+|++++++|+++|++.|..||++||+.|+.|++|++++
T Consensus 315 ~~~l~kk~-~~l~~~DiregL~aviSvkv~~PqFegQTK~kL~n~ev~~~V~~~v~~~l~~~l~enp~~ak~i~~k~i~a 393 (408)
T 3lnu_A 315 FRNLLPRG-VKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAAHDAFSLYLNQNVEIGEKIAQIAIDR 393 (408)
T ss_dssp HTTCCCTT-CCCCHHHHHTTEEEEEEEECSSCCEESTTSCEECCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HhCcccCC-CCCCHHHHhhCeEEEEEEEcCCCcccCcccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 99988875 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcc
Q psy13360 741 ARSREAARKTRELTRKK 757 (1161)
Q Consensus 741 ~~ar~aa~~a~~~~r~k 757 (1161)
|+||+ ||||+++|||
T Consensus 394 a~aR~--rkare~~rrK 408 (408)
T 3lnu_A 394 ASARL--KTEKQIVRKK 408 (408)
T ss_dssp HHTC-------------
T ss_pred HHHHH--HHHHHHhccC
Confidence 99996 9999999876
No 4
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=6e-106 Score=934.18 Aligned_cols=388 Identities=55% Similarity=0.934 Sum_probs=374.4
Q ss_pred cccCcchhhccccccceeeccceEEeecCCCCccchhHHhHHHhhHhhhcCCCCCeEEEEEecCCcEEEEECCCcccccc
Q psy13360 345 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDI 424 (1161)
Q Consensus 345 ~~y~~~~i~~L~~~e~vrkRP~mYiGs~~~~~gl~hlv~EivdNsiDe~~~g~~~~I~V~i~~dgsisV~DnGrGIPv~~ 424 (1161)
..|++++|++|+|+||||||||||||||+..+||||+||||||||+||+++|+|+.|.|+|+.||+|+|+|||||||++.
T Consensus 2 ~~y~~~~i~~L~gle~vrkRPgmYiGst~~~~gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~~g~I~V~DnG~GIp~~~ 81 (391)
T 1ei1_A 2 NSSDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGI 81 (391)
T ss_dssp CCCSGGGCEECCTTHHHHHCTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTSCEEEEECSSCCCCSB
T ss_pred CCCCHHHCEECchhHHHHcCCCeEECCCCCCcCHHHHHHHHHHhHHHHHhcCCCCEEEEEEeCCCEEEEEECCCCcccCc
Confidence 46999999999999999999999999999833999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcceEEEEeeecccCCCCCCceeeecccccchhhHhhhhccEEEEEEEeCCEEEEEEEEcCcccccccccc
Q psy13360 425 KIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTI 504 (1161)
Q Consensus 425 ~~~~~~~~~~~~~e~v~t~l~ag~kfd~~~yk~sgGlhGvG~svvNalS~~~~V~v~r~g~~~~q~f~~G~~~~~~~~~~ 504 (1161)
||. +|+|++|+|||+|||||||+++.|++||||||+|+|+|||||++|+|+++|+|+.|+|+|++|
T Consensus 82 ~~~----~~~~~~elv~~~lhagsKf~~~~~~vSgGl~GvGls~vnalS~~l~v~~~r~g~~~~~~~~~G---------- 147 (391)
T 1ei1_A 82 HPE----EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHG---------- 147 (391)
T ss_dssp CTT----TSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETT----------
T ss_pred ccc----cCcchHHHhheeccccCCcCCCcccccCCccccchHHHHHhcCeEEEEEEeCCcEEEEEEcCC----------
Confidence 999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCcEEeccCCCCCcEEEEEeCcccccc-CCCCHHHHHHHHHhhhccCCCcEEEEeecccceEEEEEeCCchhhhh
Q psy13360 505 NGISVSPIKIIGDTNKQGTKIHFWVDEKIFSN-IEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFV 583 (1161)
Q Consensus 505 ~~~~~~~~~~~g~~~~~GT~V~F~PD~~iF~~-~~~~~~~l~~Rl~elA~lnpgl~i~l~d~r~~~~~~f~~~~Gi~~fv 583 (1161)
.+..|+.+++.+.++||+|+|+||+++|++ ..|+++.|.+||+++|||||||+|+|+|++.++++.|+|++|+++|+
T Consensus 148 --~~~~~l~~~~~~~~~GT~V~f~Pd~~~F~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~d~~~~~~~~f~~~gGl~~~v 225 (391)
T 1ei1_A 148 --VPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDGKEDHFHYEGGIKAFV 225 (391)
T ss_dssp --EESSCCEEEEECSCCEEEEEEEECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTCCEEEECCCSHHHHHH
T ss_pred --cccccceeccCcCCCccEEEEEEChhhhCCccccCHHHHHHHHHHhcccCCCcEEEEEcCCCcceEEEEcCchHHHHH
Confidence 677788777777789999999999999988 89999999999999999999999999999977778999999999999
Q ss_pred hhhhcCCcccCCceEEEeeccccccCCceEEEEEEeecCCCcceeeeeecccccCCCCchhHHHHHHHHHHHHHHHHHhc
Q psy13360 584 SYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENE 663 (1161)
Q Consensus 584 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~veva~~~~~~~~e~~~SFvN~I~T~~GGtHv~g~~~alt~~in~~~~~~~ 663 (1161)
++++..+.++++++++++++. +++.||+|++|+++|+++++||||+|+|++||||++||++||+++||+|+++++
T Consensus 226 ~~l~~~~~~~~~~~i~~~~~~-----~~i~veva~~~~~~~~e~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~ 300 (391)
T 1ei1_A 226 EYLNKNKTPIHPNIFYFSTEK-----DGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 300 (391)
T ss_dssp HHHHHTSCBSSSCCEEEEEEE-----TTEEEEEEEEEBSSCCEEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCCcccccccEEEEEec-----CCEEEEEEEEccCCCCeeEEEEEcceecCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 999998888998899999887 789999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCChhhHhcceEEEEEEeecCCCcccccccccccccccchhHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q psy13360 664 FLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARS 743 (1161)
Q Consensus 664 l~Kk~~~~~~~~diregL~~vvsv~i~~P~FegQTK~kL~n~~v~~~v~~~v~~~l~~~l~~n~~~~~~i~~~~~~~~~a 743 (1161)
++|+.+.+++++||||||++||||+++||||+||||+||+|++++++|++++++.|..||++||..|+.|++|++.+|+|
T Consensus 301 l~k~~~~~~~~~dvregl~avisvki~~P~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~aa~a 380 (391)
T 1ei1_A 301 YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARA 380 (391)
T ss_dssp HHHHHCCCCCHHHHTTTEEEEEEEECSSCCBSSTTCCSBCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred cccccCCccCHHHHhhccEEEEEEecCCCCcCCcccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 98887788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh
Q psy13360 744 REAARKTREL 753 (1161)
Q Consensus 744 r~aa~~a~~~ 753 (1161)
|+||||||++
T Consensus 381 r~aa~kare~ 390 (391)
T 1ei1_A 381 REAARRAREM 390 (391)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHhhhc
Confidence 9999999986
No 5
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=5.4e-102 Score=901.74 Aligned_cols=382 Identities=31% Similarity=0.567 Sum_probs=363.5
Q ss_pred cccCcchhhccccccceeeccceEEeecCCCCccchhHHhHHHhhHhhhcCCCCCeEEEEEecCCcEEEEECCCcccccc
Q psy13360 345 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDI 424 (1161)
Q Consensus 345 ~~y~~~~i~~L~~~e~vrkRP~mYiGs~~~~~gl~hlv~EivdNsiDe~~~g~~~~I~V~i~~dgsisV~DnGrGIPv~~ 424 (1161)
+.|++++|++|+|+||||||||||||||+. ||+||||||||+||+++|+|+.|.|+|+.||+|+|+|||||||++.
T Consensus 3 ~~y~~~~i~~L~gle~vr~RPgmYiGs~~~----~~lv~ElvdNsiD~a~~g~a~~I~V~i~~~g~I~V~DnG~GIp~~~ 78 (390)
T 1s16_A 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTRP----NHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDI 78 (390)
T ss_dssp -CCSGGGCEECCTTHHHHHCGGGTSCTTST----HHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCSB
T ss_pred CCCCHHHcEEcchhHHHhhCCceeecCCcH----HHHHHHHHHHHHHHHhcCCCCEEEEEEecCCEEEEEECCCCcCccc
Confidence 469999999999999999999999999986 9999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcceEEEEeeecccCCCCCCceeeecccccchhhHhhhhccEEEEEEEeCCEEEEEEEEcCcccccccccc
Q psy13360 425 KIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTI 504 (1161)
Q Consensus 425 ~~~~~~~~~~~~~e~v~t~l~ag~kfd~~~yk~sgGlhGvG~svvNalS~~~~V~v~r~g~~~~q~f~~G~~~~~~~~~~ 504 (1161)
||+ +|+|++|+|||+|||||||+++.|++|||+||+|+|+|||||++|+|+++|+|+.|+|+|++|
T Consensus 79 ~~~----~~~~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls~vnalS~~l~v~~~r~g~~~~~~~~~G---------- 144 (390)
T 1s16_A 79 HPE----EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENG---------- 144 (390)
T ss_dssp CTT----TCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETT----------
T ss_pred ccc----cCcchhhheeeeecccCCcCCCcccccCCccccchHHHHHhhcccEEEEEECCcEEEEEEeCC----------
Confidence 999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCcEEeccCC--CCCcEEEEEeCccccccCCCCHHHHHHHHHhhhccCCCcEEEEeecccceEEEEEeCCchhhh
Q psy13360 505 NGISVSPIKIIGDTN--KQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGF 582 (1161)
Q Consensus 505 ~~~~~~~~~~~g~~~--~~GT~V~F~PD~~iF~~~~~~~~~l~~Rl~elA~lnpgl~i~l~d~r~~~~~~f~~~~Gi~~f 582 (1161)
.++.++..+|.+. ++||+|+|+||+++|++..|+++.|.+||+++|||||||+|+|+|++.+.++.|+|++|+.+|
T Consensus 145 --~~~~~~~~~g~~~~~~~GT~V~f~Pd~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~~~~~f~~~gGl~~~ 222 (390)
T 1s16_A 145 --EKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDY 222 (390)
T ss_dssp --EEEEEEEEEEECCTTCCEEEEEEEECGGGSSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTTEEEEECCSSCHHHH
T ss_pred --cccccceecccccCCCCceEEEEEECccccCcccccHHHHHHHHHHHHhcCCCcEEEEEeCCCceeEEEEcCCcHHHH
Confidence 7777777777665 799999999999999888999999999999999999999999999997767889999999999
Q ss_pred hhhhhcCCcccCCceEEEeeccccccCCceEEEEEEee-cCCCcceeeeeecccccCCCCchhHHHHHHHHHHHHHHHHH
Q psy13360 583 VSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQW-NNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEE 661 (1161)
Q Consensus 583 v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~veva~~~-~~~~~e~~~SFvN~I~T~~GGtHv~g~~~alt~~in~~~~~ 661 (1161)
+.+++.++.++++++++++++. +++.||+|++| +++|+++++||||+|+|++||||++||++||+++||+|+++
T Consensus 223 v~~l~~~~~~~~~~~i~~~~~~-----~~~~ve~a~~~~~~~~~~~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~ 297 (390)
T 1s16_A 223 LAEAVNGLPTLPEKPFIGNFAG-----DTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEY 297 (390)
T ss_dssp HHHHHTTSCCEEEEEEEEEEEC-----SSEEEEEEEEECTTCCCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcccCCCcEEEEEee-----CCEEEEEEEEeccCCCCceEEEEECCEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999988777888899999887 78999999999 99999999999999999999999999999999999999999
Q ss_pred hcccccccccCChhhHhcceEEEEEEeecCCCcccccccccccccccchhHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q psy13360 662 NEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAA 741 (1161)
Q Consensus 662 ~~l~Kk~~~~~~~~diregL~~vvsv~i~~P~FegQTK~kL~n~~v~~~v~~~v~~~l~~~l~~n~~~~~~i~~~~~~~~ 741 (1161)
++++| .+.+++++||||||++||||+++||||+||||+||+|++++++|++++++.|..||++||..|+.|++|++.+|
T Consensus 298 ~~~~k-~~~~l~~~dvregl~avisvki~~P~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~aa 376 (390)
T 1s16_A 298 RNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSA 376 (390)
T ss_dssp TTCSC-TTCCCCHHHHHTTEEEEEEEEESSCCBSSTTCCCBCCTHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hCcCc-cCCccCHHHHhhccEEEEEeecCCCCccccccchhcChhHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 99988 56789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q psy13360 742 RSREAARKTRE 752 (1161)
Q Consensus 742 ~ar~aa~~a~~ 752 (1161)
+||+||||||+
T Consensus 377 ~aR~aa~kare 387 (390)
T 1s16_A 377 QRRMRAAKKVV 387 (390)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHHHHh
Confidence 99999999998
No 6
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=100.00 E-value=1.6e-98 Score=874.52 Aligned_cols=365 Identities=22% Similarity=0.319 Sum_probs=310.4
Q ss_pred cccCcchhhccccccceeeccceEEeecCCC----------------------CccchhHHhHHHhhHhhhc-CCCCCeE
Q psy13360 345 SSYSASSIQILEGLEAVRKRPEMYIGDTSDG----------------------TGLHHFVFEILDNAIDESL-AGYCTKI 401 (1161)
Q Consensus 345 ~~y~~~~i~~L~~~e~vrkRP~mYiGs~~~~----------------------~gl~hlv~EivdNsiDe~~-~g~~~~I 401 (1161)
...-++.|++|+++||||||||||||||+.. +||||+||||||||+||++ +|+|+.|
T Consensus 10 ~~~~e~~~~~L~glE~VrkRPgMYIGst~~~~~~~~v~e~~~~~~~~~~v~~~~GL~~lv~EivdNaiDe~~~~g~~~~I 89 (418)
T 1pvg_A 10 PVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKRI 89 (418)
T ss_dssp --CHHHHSEECCHHHHHHHCCHHHHCCSSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred ccchhhheeecchhHHHhhCCCceEcccCCCcceeeeeeccccccccccccccchHHHHHHHHHhCHHHHHHhcCCCCEE
Confidence 4456679999999999999999999999972 6999999999999999995 6999999
Q ss_pred EEEEecC-CcEEEEECCCccccccccCCCCCCCCcceEEEEeeecccCCCCCCceeeecccccchhhHhhhhccEEEEEE
Q psy13360 402 NVTIYSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTI 480 (1161)
Q Consensus 402 ~V~i~~d-gsisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t~l~ag~kfd~~~yk~sgGlhGvG~svvNalS~~~~V~v 480 (1161)
.|+|++| |+|+|+|||||||+++||+ +|+|+||+|||+||||||||+++|++||||||||+|||||||+||+|+|
T Consensus 90 ~V~i~~d~~sI~V~DnGrGIPv~~h~~----~g~~~~E~v~t~LhaGgKfd~~~ykvSGGLhGVG~SvVNALS~~l~V~v 165 (418)
T 1pvg_A 90 DVNIHAEEHTIEVKNDGKGIPIEIHNK----ENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILET 165 (418)
T ss_dssp EEEEETTTTEEEEEEESSCCCCSBCTT----TCSBHHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHHHHTEEEEEEEE
T ss_pred EEEEECCCCEEEEEECCCcccCccccc----CCcccceEEEEEEecccccCCCceeccCCccceeeeeeeeccceEEEEE
Confidence 9999998 6999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred E--eCCEEEEEEEEcCccccccccccCCccccCcEEeccC-CCCCcEEEEEeCccccccCCCCHHH---HHHHHHhhhcc
Q psy13360 481 N--RNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDT-NKQGTKIHFWVDEKIFSNIEFHYEI---LKKRIRELSFL 554 (1161)
Q Consensus 481 ~--r~g~~~~q~f~~G~~~~~~~~~~~~~~~~~~~~~g~~-~~~GT~V~F~PD~~iF~~~~~~~~~---l~~Rl~elA~l 554 (1161)
+ |+|+.|+|+|++|| +.|..| .+.+.. .++||+|+||||++||++..|++++ |.+|||++|||
T Consensus 166 ~r~rdGk~y~q~f~~G~----------~~~~~p-~i~~~~~~~tGT~V~F~PD~~iF~~~~f~~d~l~~l~~RlrelA~L 234 (418)
T 1pvg_A 166 ADLNVGQKYVQKWENNM----------SICHPP-KITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDINGS 234 (418)
T ss_dssp EETTTTEEEEEEEETTT----------TEECCC-EEEECCSSCCEEEEEEEECGGGGTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCcEEEEEEEcCC----------CccCCC-eecccCCCCCceEEEEEEChHHcCCcccCHHHHHHHHHHHHHHHhc
Confidence 9 59999999999994 146666 333222 5799999999999999999999999 68999999999
Q ss_pred CCCcEEEEeecccceEEEEEeCCchhhhhh----hhhcCCc---------ccCCceEEEeeccccccCCceEEEEEEeec
Q psy13360 555 NNGVCITLIDERIKKKEIFEFKGGTSGFVS----YINKSKL---------VVHPTIFQAIGNKISEKKNNINIDVSMQWN 621 (1161)
Q Consensus 555 npgl~i~l~d~r~~~~~~f~~~~Gi~~fv~----~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~veva~~~~ 621 (1161)
||||+|+|+|+|.+. +|+.+|++ +++.++. ++|++|++++++. + .||||+||+
T Consensus 235 n~Gl~I~l~der~~~-------~g~~~~v~~y~~~l~~~k~~~~~~~~~~~~~~~~i~~~~~~-----~--~vevA~~~~ 300 (418)
T 1pvg_A 235 VRDINVYLNGKSLKI-------RNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERIN-----N--RWEVAFAVS 300 (418)
T ss_dssp STTCEEEETTEECCC-------CSHHHHHHTTTTTC-----------------CCSCEEEEEE-----T--TEEEEEEEC
T ss_pred CCCCEEEEecccccc-------ccHHHHHHHHHHhhhcccccccccccccCCCCCCEEEEEec-----c--eEEEEEEEc
Confidence 999999999999642 36666554 4676665 6778888888754 3 499999999
Q ss_pred CCCcceeeeeecccccCCCCchhHHHHHHHHHHHHHHHHHhcccccccccCChhhHhcceEEEEEEeecCCCcccccccc
Q psy13360 622 NSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNK 701 (1161)
Q Consensus 622 ~~~~e~~~SFvN~I~T~~GGtHv~g~~~alt~~in~~~~~~~l~Kk~~~~~~~~diregL~~vvsv~i~~P~FegQTK~k 701 (1161)
+++ ++++||||||+|++||||++||+++|++.+++|+++ +.+.+++++||||||+|||||++|||||+||||+|
T Consensus 301 ~~~-~~~~SFvN~I~T~~GGTH~~g~~~al~~~i~~~~~k-----~~~~~l~g~Dvregl~aviSvkv~~PqFegQTK~k 374 (418)
T 1pvg_A 301 DIS-FQQISFVNSIATTMGGTHVNYITDQIVKKISEILKK-----KKKKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQ 374 (418)
T ss_dssp SSS-CEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHCC----------CCHHHHHTTEEEEEEECCSSCCBSSTTCCS
T ss_pred CCC-ceEEEEeCceeCCCCCcHHHHHHHHHHHHHHHHHHh-----cccCCCCHHHHhhCeEEEEEEecCCCcccCccchh
Confidence 986 679999999999999999999999999999998753 33468999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHH
Q psy13360 702 LVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARK 749 (1161)
Q Consensus 702 L~n~~v~~~v~~~v~~~l~~~l~~n~~~~~~i~~~~~~~~~ar~aa~~ 749 (1161)
|+|++.+..+++++.+.|..||++ +.|+++++++|+||+||+.
T Consensus 375 L~~~~~~~v~~~~v~e~l~~~l~~-----~~iv~ki~~~a~ar~aa~l 417 (418)
T 1pvg_A 375 LTTRVKDFGSRCEIPLEYINKIMK-----TDLATRMFEIADANEENAL 417 (418)
T ss_dssp BCCCGGGSSSCCCCCHHHHHHHTT-----SHHHHHHHHHHHC------
T ss_pred hcCcccccccccchhHHHHHHHhh-----hHHHHHHHHHHHHHHHhhc
Confidence 999776544447999999999985 6899999999999998763
No 7
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C*
Probab=100.00 E-value=6.1e-98 Score=790.14 Aligned_cols=242 Identities=53% Similarity=0.791 Sum_probs=210.2
Q ss_pred hhhcccccccccccCccccCCCCCCCcceEEEEeccCCCcccccccCCcceEeeccCCccccccccchhHHhccHhHHHH
Q psy13360 753 LTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQITTL 832 (1161)
Q Consensus 753 ~~r~k~~~~~~~lpgKl~dc~~~~~~~~eL~ivEGDSA~gsak~grdr~~qailPLrGKilNv~ka~~~ki~~n~Ei~~l 832 (1161)
..|||++++.++|||||+||+++||++|||||||||||||||||||||+|||||||||||||||+|+.+||++|+||++|
T Consensus 21 ~~rrk~~~~~~~lpgKLaDc~~kd~~~~eLflvEGDSAgGsakqgRdr~~QailPLRGKiLNv~ka~~~ki~~N~Ei~~i 100 (268)
T 3k9f_C 21 DKHMKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTM 100 (268)
T ss_dssp ---------------CCBCCSSCCTTSCEEEEEECHHHHHHHHHSSCTTTEEEEEECSSCCCTTSSCHHHHHTCHHHHHH
T ss_pred hhhhhhccccCCCCccccCcccCCCCceeEEEeeeecccccccccCccccccccccCCcchhhhcCCHHHHhhCHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCCCcccccccceEEEeecCCCCChhhHHHHHHHHHHhcHhhhhcCcEEEEcCcEEEEEeCCcc----eee
Q psy13360 833 ISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNE----CYL 908 (1161)
Q Consensus 833 ~~alG~~~~~~~~~~~~lRY~kiiimtDaD~DG~HI~~Llltff~~~~p~Li~~g~v~~~~~Pl~kv~~gk~~----~y~ 908 (1161)
++|||||+| ++||+++||||||||||||||||+|||||||||||||||+||++||||+|+||||||++||+. .|+
T Consensus 101 i~alG~g~g-~~~d~~~LRY~kIiIMTDADvDGsHI~~LLltff~r~~p~Li~~G~vyia~pPLykv~~gk~~~~~~~Y~ 179 (268)
T 3k9f_C 101 IYTIGAGVG-ADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 179 (268)
T ss_dssp HHHHCSCC---CCCCC-CCCSEEEEECCSSHHHHHHHHHHHHHHHHTSHHHHHTTCEEEECCCSEEEEC-CGGGCCEEEE
T ss_pred HHHhCCCCC-ccccccccccceEEEecCCCcccccchhHHHHHHHHHhHHHHhCCcEEEecCCeEEEEeCCCcccceEEE
Confidence 999999999 689999999999999999999999999999999999999999999999999999999999853 799
Q ss_pred cCHHHHHHHHHHhcccceEEEEcCCCcccChHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHhcccCCcCChHHHHHH
Q psy13360 909 RDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQF 988 (1161)
Q Consensus 909 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 988 (1161)
|||+|+++|+.+
T Consensus 180 y~e~E~~~~~~~-------------------------------------------------------------------- 191 (268)
T 3k9f_C 180 WTDGELEELRKQ-------------------------------------------------------------------- 191 (268)
T ss_dssp CSHHHHHHHHHH--------------------------------------------------------------------
T ss_pred eCHHHHHHHHHh--------------------------------------------------------------------
Confidence 999999999641
Q ss_pred HHHHHHHhccCceEEEEEeecccceEEEEEEEeecceeeEEecccccCCHHHHHHHHHHHHHHhhhcCCeEEEecccccc
Q psy13360 989 AKKIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVIIQKSIGEKI 1068 (1161)
Q Consensus 989 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1161)
+
T Consensus 192 -------~------------------------------------------------------------------------ 192 (268)
T 3k9f_C 192 -------F------------------------------------------------------------------------ 192 (268)
T ss_dssp -------S------------------------------------------------------------------------
T ss_pred -------c------------------------------------------------------------------------
Confidence 0
Q ss_pred ceeeecCHHHHHHHHHHhccCCceeeEEecCCCCChhhhhhhccCcCceeEEEeeeccHHHHHHHHHHhcCCCchHHHHH
Q psy13360 1069 KKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKF 1148 (1161)
Q Consensus 1069 ~~~~~~~~~~~~~~~~~~~~~~~~iqr~KGLGEmn~~qlwettm~p~~r~l~~v~~~d~~~a~~~~~~lmg~~v~~Rr~f 1148 (1161)
.++++||||||||||||+|||||||||++|+|+||+++|+.+|+++|++|||++|+|||+|
T Consensus 193 -------------------~~~~~IqryKGLGEm~~~qlweTtmdP~~R~L~~Vti~da~~a~~~f~~LMG~~v~~Rk~f 253 (268)
T 3k9f_C 193 -------------------GKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKW 253 (268)
T ss_dssp -------------------CTTCEEEECCCGGGSCHHHHHHHHTCTTTCCEEEEECSCSHHHHHHHHHHHSSCCHHHHHH
T ss_pred -------------------CCCCCceEecCCCccCHHHHHHHhcCccceeEEEEEcCcHHHHHHHHHHHcCCCcHHHHHH
Confidence 1248899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccCCC
Q psy13360 1149 IELNALHAKNIDI 1161 (1161)
Q Consensus 1149 i~~~a~~~~~ld~ 1161 (1161)
|++||.++.|.|+
T Consensus 254 I~~~a~~~~~~~~ 266 (268)
T 3k9f_C 254 IEDNVKFTLEEAT 266 (268)
T ss_dssp HHHHCCCC-----
T ss_pred HHHHhHHhhcccc
Confidence 9999999888774
No 8
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=8.2e-96 Score=851.64 Aligned_cols=387 Identities=40% Similarity=0.718 Sum_probs=367.2
Q ss_pred ccCcchhhccccccceeeccceEEeecCCCCccchhHHhHHHhhHhhhcCCCCCeEEEEEecCCcEEEEECCCccccccc
Q psy13360 346 SYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDIK 425 (1161)
Q Consensus 346 ~y~~~~i~~L~~~e~vrkRP~mYiGs~~~~~gl~hlv~EivdNsiDe~~~g~~~~I~V~i~~dgsisV~DnGrGIPv~~~ 425 (1161)
.|++++|++|+++||||||||||||||+. +|++|+++|+|+||+||+++++|+.|.|+++.||+|+|+|||+|||++.|
T Consensus 2 ~y~~~~i~~l~~le~vr~rpgmyiGs~~~-~g~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~~~~i~V~DnG~GIp~~~~ 80 (390)
T 1kij_A 2 SYDASAIRVLKGLEGVRHRPAMYIGGTGV-EGYHHLFKEILDNAVDEALAGYATEILVRLNEDGSLTVEDNGRGIPVDLM 80 (390)
T ss_dssp -----CCEECCTTHHHHHCTHHHHSCSSH-HHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTSCEEEEECSSCCCCSEE
T ss_pred CCCHHHCEEcchhHHHhcCCCcEEccCCc-chHHHHHHHHHHHHHHHhhhCCCCEEEEEEEcCCEEEEEEcCCCCCHHHh
Confidence 59999999999999999999999999998 89999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcceEEEEeeecccCCCCCCceeeecccccchhhHhhhhccEEEEEEEeCCEEEEEEEEcCccccccccccC
Q psy13360 426 IDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTIN 505 (1161)
Q Consensus 426 ~~~~~~~~~~~~e~v~t~l~ag~kfd~~~yk~sgGlhGvG~svvNalS~~~~V~v~r~g~~~~q~f~~G~~~~~~~~~~~ 505 (1161)
+. +|+|++|+||+++|+|+||+++.|++|||+||+|+++||++|++++|+++++|+.|.|+|++|
T Consensus 81 ~~----~~~~~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v~als~~~~v~t~~~g~~~~~~~~~G----------- 145 (390)
T 1kij_A 81 PE----EGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVNALSEWTVVEVFREGKHHRIAFSRG----------- 145 (390)
T ss_dssp TT----TTEEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHHHTEEEEEEEEEETTEEEEEEEETT-----------
T ss_pred hh----ccccchhhheeeeeecccccCccccccCCCCCcceeeecccccceEEEEecCCcEEEEEEcCC-----------
Confidence 98 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCcEEeccC--CCCCcEEEEEeCccccccCCCCHHHHHHHHHhhhccCCCcEEEEeecccceEEEEEeCCchhhhh
Q psy13360 506 GISVSPIKIIGDT--NKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFV 583 (1161)
Q Consensus 506 ~~~~~~~~~~g~~--~~~GT~V~F~PD~~iF~~~~~~~~~l~~Rl~elA~lnpgl~i~l~d~r~~~~~~f~~~~Gi~~fv 583 (1161)
.+..++..++.+ .++||+|+|+||+++|++..|+++.|.+||+++|+||||++|+|+|++.+.++.|+|++|+++|+
T Consensus 146 -~~~~~~~~~~~~~~~~~GT~V~f~Pd~~~F~~~~~~~~~l~~rl~~~A~lnpgv~i~l~d~~~~~~~~f~~~~Gl~~~v 224 (390)
T 1kij_A 146 -EVTEPLRVVGEAPRGKTGTRVTFKPDPEIFGNLRFDPSKIRARLREVAYLVAGLKLVFQDRQHGKEEVFLDKGGVASFA 224 (390)
T ss_dssp -EEEEEEEEEEECGGGCCEEEEEEEECHHHHTTCCCCHHHHHHHHHHHHHHTTTCEEEEEEGGGTEEEEECCTTHHHHHH
T ss_pred -cccccceeeccccCCCCCcEEEEEEChHHhCCccccHHHHHHHHHHhcCcCCCcEEEEEeCCCcceEEEEcCCcHHHHH
Confidence 666666666755 57999999999999998889999999999999999999999999999977678999999999999
Q ss_pred hhhhcCCcccCCceEEEeeccccccCCceEEEEEEeecCCCcceeeeeecccccCCCCchhHHHHHHHHHHHHHHHHHhc
Q psy13360 584 SYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENE 663 (1161)
Q Consensus 584 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~veva~~~~~~~~e~~~SFvN~I~T~~GGtHv~g~~~alt~~in~~~~~~~ 663 (1161)
++++..+.++++++++++++. +++.||+|++|+++|.++++||||+|+|.+||||++||++||++++|+|+++++
T Consensus 225 ~~l~~~~~~~~~~~i~~~~~~-----~~i~ve~a~~~~~~~~~~~~sFvN~i~t~~GGTH~~g~~~alt~~i~~~~~~~~ 299 (390)
T 1kij_A 225 KALAEGEDLLYEKPFLIRGTH-----GEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKAG 299 (390)
T ss_dssp HHHTTTSCBSCSSCEEEEEEE-----TTEEEEEEEEEBSSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCCCcCCCCcEEEEeec-----CCeEEEEEEEecCCCCceEEEEEcCeeeCCCCchhHHHHHHHHHHHHHHHHHhC
Confidence 999988888888899999887 789999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCChhhHhcceEEEEEEeecCCCcccccccccccccccchhHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q psy13360 664 FLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARS 743 (1161)
Q Consensus 664 l~Kk~~~~~~~~diregL~~vvsv~i~~P~FegQTK~kL~n~~v~~~v~~~v~~~l~~~l~~n~~~~~~i~~~~~~~~~a 743 (1161)
++|+.+.+++++|||+||++||||+++||||+||||+||+|++++++|+++|.+.|..||++||+.|+.|++|++.+|+|
T Consensus 300 l~k~~~~~l~~~dvregl~avisvki~~P~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~~~~a 379 (390)
T 1kij_A 300 LNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQVVYERLLEILEENPRIAKAVYEKALRAAQA 379 (390)
T ss_dssp CCCSSSCCCCTTTTTTTEEEEEEEECSSCCBCSTTCCSBCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCcCHHHHhhhcEEEEEeecCCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 99887789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhh
Q psy13360 744 REAARKTRELT 754 (1161)
Q Consensus 744 r~aa~~a~~~~ 754 (1161)
|+||||||+++
T Consensus 380 R~aa~kare~~ 390 (390)
T 1kij_A 380 REAARKARELV 390 (390)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHhhhcC
Confidence 99999999863
No 9
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=100.00 E-value=3.3e-94 Score=834.96 Aligned_cols=360 Identities=21% Similarity=0.265 Sum_probs=308.4
Q ss_pred chhhccccccceeeccceEEeecCC---------------------CCccchhHHhHHHhhHhhhc-CCCCCeEEEEEec
Q psy13360 350 SSIQILEGLEAVRKRPEMYIGDTSD---------------------GTGLHHFVFEILDNAIDESL-AGYCTKINVTIYS 407 (1161)
Q Consensus 350 ~~i~~L~~~e~vrkRP~mYiGs~~~---------------------~~gl~hlv~EivdNsiDe~~-~g~~~~I~V~i~~ 407 (1161)
+.|++|+++||||||||||||||+. .+||||+||||||||+||++ +|+|+.|.|+|+.
T Consensus 4 ~~~~~L~glE~VrkRPgmYiGst~~~~~~~~v~~~~~~~~~~~~~~~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~ 83 (400)
T 1zxm_A 4 RIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDP 83 (400)
T ss_dssp HHSEECCHHHHHHHCCHHHHCCCSCEEEEEEEEETTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET
T ss_pred HhheecchHHHHHhCCCcEEccCCccccceeeeccccccccccccccchHHHHHHHHHhhHHhHHhhcCCCceEEEEEEC
Confidence 4799999999999999999999993 27999999999999999995 7999999999999
Q ss_pred C-CcEEEEECCCccccccccCCCCCCCCcceEEEEeeecccCCCCCCceeeecccccchhhHhhhhccEEEEEEEe--CC
Q psy13360 408 D-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINR--NK 484 (1161)
Q Consensus 408 d-gsisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t~l~ag~kfd~~~yk~sgGlhGvG~svvNalS~~~~V~v~r--~g 484 (1161)
| |+|+|+|||||||++.||+ +|+|++|+|||+|||||||+++.|++||||||||+|+|||||+||+|+++| +|
T Consensus 84 ~~~~I~V~DnGrGIPv~~h~~----~~~~~~e~v~t~lhagsKf~~~~ykvSgGlhGvGlsvVnAlS~~l~v~v~~~~~g 159 (400)
T 1zxm_A 84 ENNLISIWNNGKGIPVVEHKV----EKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYK 159 (400)
T ss_dssp TTTEEEEEEESSCCCCSEETT----TTEEHHHHHHHSSSEESCCCGGGCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTT
T ss_pred CCCEEEEEECCCcccCccccc----cCccchhheeeeecccCCCCCCcccccCCccccceeeeEEeccceEEEEecCCCC
Confidence 6 8999999999999999999 999999999999999999999999999999999999999999999999998 59
Q ss_pred EEEEEEEEcCccccccccccCCccccCcEEeccC-CCCCcEEEEEeCccccccCCCCHHH---HHHHHHhhhccCCCcEE
Q psy13360 485 KIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDT-NKQGTKIHFWVDEKIFSNIEFHYEI---LKKRIRELSFLNNGVCI 560 (1161)
Q Consensus 485 ~~~~q~f~~G~~~~~~~~~~~~~~~~~~~~~g~~-~~~GT~V~F~PD~~iF~~~~~~~~~---l~~Rl~elA~lnpgl~i 560 (1161)
+.|+|.|++| .+..++..++.+ .++||+|+|+||+++|++..|++++ |.+|++++|||||||+|
T Consensus 160 ~~~~~~~~~G------------~~~~~~~~ig~~~~~~GT~V~F~Pd~~iF~~~ef~~~~~~~l~~rlrelA~lnpgv~i 227 (400)
T 1zxm_A 160 KMFKQTWMDN------------MGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKV 227 (400)
T ss_dssp EEEEEEEETT------------TTEECCCEEEECCSCCEEEEEEEECGGGGTCSSCCHHHHHHHHHHHHHHHHHSSSCEE
T ss_pred cEEEEEEccC------------ccccCcceeccCCCCCccEEEEEEChHHhCceeecHHHHHHHHHHHHHHHhhCCCcEE
Confidence 9999999999 444444556655 4689999999999999888999999 88999999999999999
Q ss_pred EEeecccceEEEEEeCCchhhhhhhhhcCCcccCCceEEEeeccccccCCceEEEEEEeecC-CCcceeeeeecccccCC
Q psy13360 561 TLIDERIKKKEIFEFKGGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNN-SYNENILCFTNNILQVD 639 (1161)
Q Consensus 561 ~l~d~r~~~~~~f~~~~Gi~~fv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~veva~~~~~-~~~e~~~SFvN~I~T~~ 639 (1161)
+|+|+|.+ ++||++|+++++.++.++++.++.+..+. +++.||+|+||++ +|+ ++||||||+|++
T Consensus 228 ~l~der~~-------~~Gi~~yv~~l~~~~~~~~~~~~~~~~~~-----~~~~~eva~~~~~~~~~--~~sfvN~I~T~~ 293 (400)
T 1zxm_A 228 FLNGNKLP-------VKGFRSYVDMYLKDKLDETGNSLKVIHEQ-----VNHRWEVCLTMSEKGFQ--QISFVNSIATSK 293 (400)
T ss_dssp EETTEECC-------CCSHHHHHHHHHTTCBCSSSSBCCCEEEE-----EETTEEEEEEECSSSCE--EEEEETTEECTT
T ss_pred EEecCCCC-------CCCHHHHHHHHhcCCCccCCCCcceEEee-----cCcEEEEEEEEcCCCce--EEEEeCCccCCC
Confidence 99999853 48999999999988877776443333333 4567999999995 784 699999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhcccccccccCChhhHhcceEEEEEEeecCCCcccccccccccccccchhHH-HHHHH
Q psy13360 640 GGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEE-IIIKT 718 (1161)
Q Consensus 640 GGtHv~g~~~alt~~in~~~~~~~l~Kk~~~~~~~~diregL~~vvsv~i~~P~FegQTK~kL~n~~v~~~v~~-~v~~~ 718 (1161)
||||++||++||||+||+|++++ ||.+.+++++||||||++||||+++||||+||||+||+|+++ .+++. ++.+.
T Consensus 294 GGTH~~gfr~altr~i~~y~~k~---~k~~~~l~~~Dvregl~avisvkv~~PqFegQTK~kL~~~~~-~~v~~~~~~~~ 369 (400)
T 1zxm_A 294 GGRHVDYVADQIVTKLVDVVKKK---NKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPK-SFGSTCQLSEK 369 (400)
T ss_dssp EEHHHHHHHHHHHHHHHHHHTTC---C----CCCHHHHHTTEEEEEEECCSSCCBSSTTCCEECCCGG-GSSSCCCCCHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHh---cccCCCcCHHHHhhCeEEEEEEecCCCCcCcccchhhcCccc-ccccccchhHH
Confidence 99999999999999999999864 334568999999999999999999999999999999999987 77777 99999
Q ss_pred HHHHHhhCchhHHHHHHHHHHHHHHH
Q psy13360 719 LFDFLQENPGESKLICEKIIEAARSR 744 (1161)
Q Consensus 719 l~~~l~~n~~~~~~i~~~~~~~~~ar 744 (1161)
|..|| +||..++.|++++..+++++
T Consensus 370 ~~~~l-~~~~~~~~i~~~a~~~~~~~ 394 (400)
T 1zxm_A 370 FIKAA-IGCGIVESILNWVKFKAQVQ 394 (400)
T ss_dssp HHHHH-TTC-----------------
T ss_pred HHHHH-cChHHHHHHHHHHHHHHHHH
Confidence 99999 78988888888777665544
No 10
>3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A*
Probab=100.00 E-value=6.8e-93 Score=744.78 Aligned_cols=231 Identities=48% Similarity=0.847 Sum_probs=175.3
Q ss_pred cCCCCCCCcceEEEEeccCCCcccccccCCcceEeeccCCccccccccchhHHhccHhHHHHHHHhCCCCCCCCCccccc
Q psy13360 771 DCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKL 850 (1161)
Q Consensus 771 dc~~~~~~~~eL~ivEGDSA~gsak~grdr~~qailPLrGKilNv~ka~~~ki~~n~Ei~~l~~alG~~~~~~~~~~~~l 850 (1161)
|-.++||++|||||||||||||||||||||+|||||||||||||||+|+.+||++|+||++|++|||||+| ++||+++|
T Consensus 11 ~~~~~d~~~~eLflvEGDSAgGsak~gRdr~~QailPLRGKiLNv~ka~~~ki~~N~Ei~~ii~alG~~~g-~~~d~~~L 89 (242)
T 3m4i_A 11 DDDKTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIH-DEFDIGKL 89 (242)
T ss_dssp ----CCGGGEEEEEEESSSCC---------CEEEEEEECC--------CHHHHTTCHHHHHHHHHHCSCSG-GGCCGGGC
T ss_pred CccccChhheEEEEEecccccchhhhccccccccccccCCcchhhhhcCHHHHhhCHHHHHHHHHhCCCcC-cccccccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999 68999999
Q ss_pred ccceEEEeecCCCCChhhHHHHHHHHHHhcHhhhhcCcEEEEcCcEEEEEeCC-cceeecCHHHHHHHHHHhcccceEEE
Q psy13360 851 RYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGN-NECYLRDDIEEERYMLKIAFKNVKLI 929 (1161)
Q Consensus 851 RY~kiiimtDaD~DG~HI~~Llltff~~~~p~Li~~g~v~~~~~Pl~kv~~gk-~~~y~~~~~e~~~~~~~~~~~~~~~~ 929 (1161)
|||||||||||||||+|||||||||||||||+||++||||+|+||||||++|| ++.||||++|+++|+.+.+
T Consensus 90 RY~kIiIMTDADvDGsHI~~LLltff~r~~p~Li~~G~vyia~pPL~kv~~gk~~~~y~ys~~E~~~~~~~~~------- 162 (242)
T 3m4i_A 90 RYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGL------- 162 (242)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHHHHHCTHHHHTTCEEEECCCSEEECCTTSCCEEESSHHHHHHHHHHHH-------
T ss_pred ccceEEEecCCCcccccchhHHHHHHHHHhHHHHhcCcEEEecCceEEEEeCCccEEEeCCHHHHHHHHHHhh-------
Confidence 99999999999999999999999999999999999999999999999999999 8999999999999975200
Q ss_pred EcCCCcccChHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHhcccCCcCChHHHHHHHHHHHHHhccCceEEEEEeec
Q psy13360 930 SIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSNIEIIVEFDQ 1009 (1161)
Q Consensus 930 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1009 (1161)
..
T Consensus 163 ----------------------------------------------------------------~~-------------- 164 (242)
T 3m4i_A 163 ----------------------------------------------------------------KA-------------- 164 (242)
T ss_dssp ----------------------------------------------------------------HH--------------
T ss_pred ----------------------------------------------------------------hc--------------
Confidence 00
Q ss_pred ccceEEEEEEEeecceeeEEecccccCCHHHHHHHHHHHHHHhhhcCCeEEEeccccccceeeecCHHHHHHHHHHhccC
Q psy13360 1010 LNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAEN 1089 (1161)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1089 (1161)
+ . + -++
T Consensus 165 -----------------------------------------------------~--~--~-----------------~~k 170 (242)
T 3m4i_A 165 -----------------------------------------------------G--K--K-----------------INK 170 (242)
T ss_dssp -----------------------------------------------------T--C--C-----------------CCT
T ss_pred -----------------------------------------------------C--C--c-----------------ccc
Confidence 0 0 0 012
Q ss_pred CceeeEEecCCCCChhhhhhhccCcCceeEEEeeeccHHHHHHHHHHhcCCCchHHHHHHHHhhcccccCCC
Q psy13360 1090 MVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 1161 (1161)
Q Consensus 1090 ~~~iqr~KGLGEmn~~qlwettm~p~~r~l~~v~~~d~~~a~~~~~~lmg~~v~~Rr~fi~~~a~~~~~ld~ 1161 (1161)
..+||||||||||||+|||||||||++|+|+||+++|+..|+++|++|||++|+|||+||++||.+|.+|||
T Consensus 171 ~~~IqryKGLGEm~~~ql~ettmdp~~R~L~~V~i~d~~~a~~~f~~LMG~~v~~Rk~~I~~~~~~~~~ld~ 242 (242)
T 3m4i_A 171 EDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVDARRSFITRNAKDVRFLDV 242 (242)
T ss_dssp TTSEEECSCGGGSCHHHHHHHHTCTTTCCEEECCHHHHHHHHHHHHHHHHC---------------------
T ss_pred ccccceEcCcCCCCHHHHHHHhcCccceeeEEeccCcHHHHHHHHHHHhCCCcHHHHHHHHHHhhhhhhccC
Confidence 248999999999999999999999999999999999999999999999999999999999999999999996
No 11
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=100.00 E-value=7.6e-88 Score=776.87 Aligned_cols=349 Identities=23% Similarity=0.403 Sum_probs=318.3
Q ss_pred cccccceeeccceEEeecCCCCccchhHHhHHHhhHhhhcCCCCCeEEEEEecCCcEEEEECCCccccccccCCCCCCCC
Q psy13360 355 LEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKR 434 (1161)
Q Consensus 355 L~~~e~vrkRP~mYiGs~~~~~gl~hlv~EivdNsiDe~~~g~~~~I~V~i~~dgsisV~DnGrGIPv~~~~~~~~~~~~ 434 (1161)
++.+||||||||||||||+. +||||+||||||||+||+++|+|++|.|+|+.||+|+|+|||||||+
T Consensus 9 ~~~lE~vrkRPgmYiGs~~~-~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~~g~I~V~DnGrGIp~------------ 75 (369)
T 3cwv_A 9 GGIVENVRKRPGMYCGDVGE-YGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDGSIALFCTSRTVTA------------ 75 (369)
T ss_dssp CCHHHHHHHSTHHHHSCSSH-HHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEEEESSCCH------------
T ss_pred ccHhHHHHhCCceEEcCCCC-chHHHHHHHHHhhhHhHHhhCCCCEEEEEEeCCCEEEEEECCCCcCH------------
Confidence 45599999999999999998 89999999999999999999999999999999999999999999998
Q ss_pred cceEEEEeeecccCCCCC----CceeeecccccchhhHhhhhccEEEEEEEeCCEEEEEEEEcCccccccccccCCcccc
Q psy13360 435 SAAEIVMTELHAGGKFNK----NSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVS 510 (1161)
Q Consensus 435 ~~~e~v~t~l~ag~kfd~----~~yk~sgGlhGvG~svvNalS~~~~V~v~r~g~~~~q~f~~G~~~~~~~~~~~~~~~~ 510 (1161)
|++| +|||||||++ +.|++|| |+|+|||||+||+|+++|+|+.|+|+|++|+++. ++.+..
T Consensus 76 ---e~v~-~lhagsKf~~~~~~~~y~vsG-----Gls~vnalSs~l~v~t~r~g~~~~~~~~~G~~~~------~~~~~~ 140 (369)
T 3cwv_A 76 ---ENLV-RVATGAGFLGRPPGDGWGWDS-----MLVVSLALSSRYQVDIWADGRQWRVMGEHGHPQG------EGAAVT 140 (369)
T ss_dssp ---HHHH-HHHTTTTGGGSSCCCSTTTTS-----SHHHHHHTEEEEEEEEEETTEEEEEEEETTEECT------TCEEES
T ss_pred ---hHee-eeecCCCcCCCcccccccccC-----HHHHHHHhhceEEEEEEECCCEEEEEEeCCcccc------cccccC
Confidence 2478 9999999998 8899995 7999999999999999999999999999993200 000166
Q ss_pred CcEEeccCCCCCcEEEEEeCccccccCCCCHHHHHHHHHhhhccCCCcEEEEeecccceEEEEEeCCchhhhhhhhhcCC
Q psy13360 511 PIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFVSYINKSK 590 (1161)
Q Consensus 511 ~~~~~g~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~Rl~elA~lnpgl~i~l~d~r~~~~~~f~~~~Gi~~fv~~l~~~~ 590 (1161)
|++.+|.+.++||+|+|+||+++|++..|+++.|.+|++++|+|||||+|+|+|++.++++.|+|++|+++|+++++..+
T Consensus 141 ~l~~~g~~~~~GT~V~f~Pd~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~~~~~f~~~gGl~~~v~~l~~~~ 220 (369)
T 3cwv_A 141 PMEPMPVSAERGVRVHFVPDATIFEVLAFDRARLSRRCNELAALAPGLRVSFADLQRGERTLWHLPGGVAQWAHVLTEAR 220 (369)
T ss_dssp SCCCCSSCCSEEEEEEEEECTTTCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEETTTTEEEEEECTTHHHHHHHHHHTTS
T ss_pred CceEecccCCCCCEEEEEECHHHhCCccccHHHHHHHHHHHcCcCCCcEEEEEeCCCCeeEEEEeCchHHHHHHHHhcCC
Confidence 66667766789999999999999988899999999999999999999999999999777789999999999999999888
Q ss_pred cccCCceEEEeeccccccCCceEEEEEEeecCCCcceeeeeecccccCCCCchhHHHHHHHHHHHHHHHHHhcccccccc
Q psy13360 591 LVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKI 670 (1161)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~veva~~~~~~~~e~~~SFvN~I~T~~GGtHv~g~~~alt~~in~~~~~~~l~Kk~~~ 670 (1161)
.++++++++++++. +++.||+|++|+++|+++++||||+|+|.+||||++||++||++++++|+ ||.+.
T Consensus 221 ~~~~~~~i~~~~~~-----~~i~ve~a~~~~~~~~~~~~sFVN~i~t~~GGTH~~g~~~al~~a~~~~~------k~~~~ 289 (369)
T 3cwv_A 221 PQLHPEPVVFDFTW-----DGLRVQCALQWCEDEDSTLLSFANAVRTVRHGAHVKGVTQALRGALAKLS------GETRG 289 (369)
T ss_dssp CBSSSSCEEEEEEE-----TTEEEEEEEEEBSSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHH------TCCGG
T ss_pred cccCCCcEEEEEec-----CCEEEEEEEEecCCCCeeEEEEECCEEeCCCCCHHHHHHHHHHHHHHHHH------hhcCC
Confidence 88888899999887 78999999999999999999999999999999999999999999999998 33456
Q ss_pred cCChhhHhcceEEEEEEeecCCC--cccccccccccccccchhHHHHHHHHHHHHhhCchhHHHHHHHHHHHHH
Q psy13360 671 EIIGEDIREGLTCVLSIKIPDPK--FNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAAR 742 (1161)
Q Consensus 671 ~~~~~diregL~~vvsv~i~~P~--FegQTK~kL~n~~v~~~v~~~v~~~l~~~l~~n~~~~~~i~~~~~~~~~ 742 (1161)
+++++||||||++||||+++||| |+||||+||+|++++++|++++++.|..||++||+.|+.|++|++.+|-
T Consensus 290 ~l~~~dvregl~avisvk~~~P~~~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~~~~ 363 (369)
T 3cwv_A 290 AFPWARVAQGLTAIVAVSGPRRQMAFAGPTKELLAIPGLEEAIRKQLQPLFIELLREHPVTPALLARRTSGSEG 363 (369)
T ss_dssp GSCHHHHTTTEEEEEEEECCGGGCCBSSTTCCSBCCTTHHHHHHHHHHHHHHHHHHTCTTHHHHHTTC------
T ss_pred CcCHHHHhhccEEEEEeccCCcchhccccccchhcCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHhcc
Confidence 89999999999999999999999 9999999999999999999999999999999999999999999998763
No 12
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=100.00 E-value=9.4e-86 Score=797.38 Aligned_cols=258 Identities=38% Similarity=0.618 Sum_probs=223.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccccccccccCccccCCCCCCCcceEEEEeccCCCcccccccCCcceEeeccCCccc
Q psy13360 734 CEKIIEAARSREAARKTRELTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVL 813 (1161)
Q Consensus 734 ~~~~~~~~~ar~aa~~a~~~~r~k~~~~~~~lpgKl~dc~~~~~~~~eL~ivEGDSA~gsak~grdr~~qailPLrGKil 813 (1161)
+++++.+|+||++++++ ++||++++..+|||||+||+++||++|||||||||||||||||||||+||||||||||||
T Consensus 1 ~~k~~~~~~ar~~~~~~---~~rk~~~~~~~lpgKL~dc~~~~~~~~eL~lvEGDSAgGsak~gRdr~~qailPLRGKiL 77 (767)
T 2xkj_E 1 MEMAISKAGRRLKAAKK---VERKKIVSGPALPGKLADCVGQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKIL 77 (767)
T ss_dssp ---------------------CCCCCSSSCSSTTTCBCCCC-CGGGCEEEEEEHHHHHHHHHHHSCTTTEEEEEESSCCC
T ss_pred ChHHHHHHHHHHHHHHH---hhhccccccccCcHhhHhcccCCCcceEEEEeeCCCCcchhhhcCCcccccccccccchh
Confidence 36788999999865554 236888899999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhHHhccHhHHHHHHHhCCCCCCCCCcccccccceEEEeecCCCCChhhHHHHHHHHHHhcHhhhhcCcEEEEc
Q psy13360 814 NIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQ 893 (1161)
Q Consensus 814 Nv~ka~~~ki~~n~Ei~~l~~alG~~~~~~~~~~~~lRY~kiiimtDaD~DG~HI~~Llltff~~~~p~Li~~g~v~~~~ 893 (1161)
|||||+.+||++|+||++|++|||||+|. +|+++||||||||||||||||+|||||||||||||||+||++||||+|+
T Consensus 78 Nv~ka~~~ki~~n~Ei~~i~~alG~~~g~--~~~~~lRY~kiiImtDaDvDG~HI~~Llltff~r~~p~Li~~G~vy~a~ 155 (767)
T 2xkj_E 78 NTWEVSSDEVLASQEVHDIAIAIGVDPGS--DDLSELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAM 155 (767)
T ss_dssp CCTTSCTTTGGGSHHHHHHHHHHTCCTTC--CCCTTCCCSEEEEECCSSHHHHHHHHHHHHHHHHHCHHHHHTTCEEEEC
T ss_pred hhhcCCHHHHhccHHHHHHHHHhCCCccc--ccccccccceEEEeecCCCCcchhhHHHHHHHHHHhHHHHhcCcEEEec
Confidence 99999999999999999999999999984 4999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeCCcceeecCHHHHHHHHHHhcccceEEEEcCCCcccChHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHh
Q psy13360 894 PPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMS 973 (1161)
Q Consensus 894 ~Pl~kv~~gk~~~y~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1161)
||||||++||++.||||++|+++|+.+
T Consensus 156 pPl~kv~~gk~~~y~~~~~e~~~~~~~----------------------------------------------------- 182 (767)
T 2xkj_E 156 PPLFRIDIGKDVHYALDDEELETILKN----------------------------------------------------- 182 (767)
T ss_dssp CCSEEEEETTEEEEESSHHHHHHHHHT-----------------------------------------------------
T ss_pred CCEEEEEECCEEEeeeCHHHHHHHHHH-----------------------------------------------------
Confidence 999999999999999999999999742
Q ss_pred cccCCcCChHHHHHHHHHHHHHhccCceEEEEEeecccceEEEEEEEeecceeeEEecccccCCHHHHHHHHHHHHHHhh
Q psy13360 974 DVILNLDTRENAEQFAKKIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKI 1053 (1161)
Q Consensus 974 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1053 (1161)
+
T Consensus 183 ----------------------~--------------------------------------------------------- 183 (767)
T 2xkj_E 183 ----------------------V--------------------------------------------------------- 183 (767)
T ss_dssp ----------------------C---------------------------------------------------------
T ss_pred ----------------------h---------------------------------------------------------
Confidence 0
Q ss_pred hcCCeEEEeccccccceeeecCHHHHHHHHHHhccCCceeeEEecCCCCChhhhhhhccCcCceeEEEeeeccHHHHHHH
Q psy13360 1054 IGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKI 1133 (1161)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iqr~KGLGEmn~~qlwettm~p~~r~l~~v~~~d~~~a~~~ 1133 (1161)
. ++++++||||||||||||+|||||||||++|+|+||+++|+..|+++
T Consensus 184 ------------~--------------------~~~~~~IqRYKGLGEmnp~ql~ETtmdp~~R~L~~v~i~da~~ad~~ 231 (767)
T 2xkj_E 184 ------------K--------------------GNKNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDAHLTAGL 231 (767)
T ss_dssp ------------C--------------------SSCCCEEEECCCGGGSCHHHHHHHHTCTTTCCEEEEECCSHHHHHHH
T ss_pred ------------h--------------------cCCCCceecccCCCCCCHHHHhHhhcCccceEEEEEEcccHHHHHHH
Confidence 0 12358999999999999999999999999999999999999999999
Q ss_pred HHHhcCC-CchHHHHHHHHhhcccccCCC
Q psy13360 1134 FMTLMGD-NVELRRKFIELNALHAKNIDI 1161 (1161)
Q Consensus 1134 ~~~lmg~-~v~~Rr~fi~~~a~~~~~ld~ 1161 (1161)
|++|||+ +|+|||+||++||..+ ++|+
T Consensus 232 f~~lmgkk~ve~RKewI~~~~~~~-~~d~ 259 (767)
T 2xkj_E 232 LDKLLAKKRAADRKQWLEQKGNLA-DITV 259 (767)
T ss_dssp HHHHHCGGGHHHHHHHHHHHGGGC-C---
T ss_pred HHHHhCCCCchHHHHHHHhcCccc-cchh
Confidence 9999998 6999999999999644 6653
No 13
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=100.00 E-value=1.7e-73 Score=681.85 Aligned_cols=225 Identities=25% Similarity=0.409 Sum_probs=209.6
Q ss_pred cccccCccccCC---CCCCCcceEEEEeccCCCcccccccC---CcceEeeccCCccccccccchhHHhccHhHHHHHHH
Q psy13360 762 DIELSTKLADCQ---EKNPELCELYIVEGDSAGGSVKQGRD---RRFQAVLPLRGKVLNIEKARFEKIILSEQITTLIST 835 (1161)
Q Consensus 762 ~~~lpgKl~dc~---~~~~~~~eL~ivEGDSA~gsak~grd---r~~qailPLrGKilNv~ka~~~ki~~n~Ei~~l~~a 835 (1161)
..++| ||+||+ ++||++|||||||||||||||||||+ |+|||||||||||||||+|+.+||++|+||++|++|
T Consensus 3 i~g~~-KL~Dc~~a~~k~~~~~el~lvEGDSAggsak~gr~~~gR~~qailPLrGKiLNv~ka~~~ki~~n~Ei~~i~~a 81 (757)
T 3l4j_A 3 ITNYP-KLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKI 81 (757)
T ss_dssp CCSCS-SCBCCTTSSSTTTTTCEEEEEEHHHHHHHHHHHHHHHCSTTEEEEEECSSCCCCTTCCHHHHHHCHHHHHHHHH
T ss_pred cCCCc-CccccccccCCCccceEEEEeecccchhhHhhcccccCcccccccccCCcccchhhccHHHhhcCHHHHHHHHH
Confidence 45788 999995 89999999999999999999999995 889999999999999999999999999999999999
Q ss_pred hCCCCCCCCCcccccccceEEEeecCCCCChhhHHHHHHHHHHhcHhhhh-cCcEEEEcCcEEEEE---eCCcceeecCH
Q psy13360 836 LGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIE-YGYIYIAQPPLYKIK---YGNNECYLRDD 911 (1161)
Q Consensus 836 lG~~~~~~~~~~~~lRY~kiiimtDaD~DG~HI~~Llltff~~~~p~Li~-~g~v~~~~~Pl~kv~---~gk~~~y~~~~ 911 (1161)
||||+|+++||+++||||||||||||||||+|||||||||||||||+||+ +||||+|+||||||+ +||+++|||++
T Consensus 82 lG~~~g~~~~~~~~lRY~kiiImtDaD~DG~HI~~Llltff~r~~p~Li~~~G~vy~~~~Pl~kv~~~~~gk~~~~~ys~ 161 (757)
T 3l4j_A 82 MGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNM 161 (757)
T ss_dssp TTCCCSSCCCCGGGSSCSEEEEECCSSHHHHHHHHHHHHHHHHHSTTSTTSTTCEEEECCCSEEEEECSSSCCEEEESSH
T ss_pred hCCCcCcccccccccCcceEEEecCcccccccchhHHHHHHHHHhHHHhccCCEEEEecCceEEEeeccCCcceEEecCH
Confidence 99999976679999999999999999999999999999999999999999 899999999999999 89999999999
Q ss_pred HHHHHHHHHhcccceEEEEcCCCcccChHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHhcccCCcCChHHHHHHHHH
Q psy13360 912 IEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKK 991 (1161)
Q Consensus 912 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 991 (1161)
+|+++|+.+
T Consensus 162 ~E~~~~~~~----------------------------------------------------------------------- 170 (757)
T 3l4j_A 162 PDYEKWREE----------------------------------------------------------------------- 170 (757)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred HHHHHHHHH-----------------------------------------------------------------------
Confidence 999999642
Q ss_pred HHHHhccCceEEEEEeecccceEEEEEEEeecceeeEEecccccCCHHHHHHHHHHHHHHhhhcCCeEEEecccccccee
Q psy13360 992 IIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVIIQKSIGEKIKKY 1071 (1161)
Q Consensus 992 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1161)
+ +
T Consensus 171 ----~------------------------------------------------------------------~-------- 172 (757)
T 3l4j_A 171 ----E------------------------------------------------------------------S-------- 172 (757)
T ss_dssp ----T------------------------------------------------------------------G--------
T ss_pred ----h------------------------------------------------------------------c--------
Confidence 0 0
Q ss_pred eecCHHHHHHHHHHhccCCceeeEEecCCCCChhhhhhh--ccCcCceeEEEeeeccHHHHHHHHHHhcCCCchHHHHHH
Q psy13360 1072 TANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWET--TMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFI 1149 (1161)
Q Consensus 1072 ~~~~~~~~~~~~~~~~~~~~~iqr~KGLGEmn~~qlwet--tm~p~~r~l~~v~~~d~~~a~~~~~~lmg~~v~~Rr~fi 1149 (1161)
+.++++||||||||||||+||||| ||||.+|+|++|+++|+..++.+|+. ++|+|||+||
T Consensus 173 ---------------~~~~~~iqryKGLGem~~~ql~e~f~~m~~~~r~l~~~~~~d~~~~d~~f~~---~~~~~Rk~wi 234 (757)
T 3l4j_A 173 ---------------HKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYIDLAFSK---KKADDRKEWL 234 (757)
T ss_dssp ---------------GGSCEEEEECCTTTTSCHHHHHHHHHTCTTTEEEECCCCTTHHHHHHHHHCT---TCHHHHHHHH
T ss_pred ---------------cCCCCccceecCcCcCCHHHHHHHhcCcCceeEEEEecCccHHHHHHHHhCc---CcchHHHHHH
Confidence 123589999999999999999996 67899999999999999999998887 8999999999
Q ss_pred HHhhc
Q psy13360 1150 ELNAL 1154 (1161)
Q Consensus 1150 ~~~a~ 1154 (1161)
++|+-
T Consensus 235 ~~~~~ 239 (757)
T 3l4j_A 235 RQYEP 239 (757)
T ss_dssp HHCCT
T ss_pred HhcCC
Confidence 99985
No 14
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=100.00 E-value=1.2e-73 Score=683.29 Aligned_cols=223 Identities=29% Similarity=0.444 Sum_probs=164.7
Q ss_pred cccccCccccC---CCCCCCcceEEEEeccCCC-----cccccccCCcceEeeccCCccccccccchhHHhccHhHHHHH
Q psy13360 762 DIELSTKLADC---QEKNPELCELYIVEGDSAG-----GSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQITTLI 833 (1161)
Q Consensus 762 ~~~lpgKl~dc---~~~~~~~~eL~ivEGDSA~-----gsak~grdr~~qailPLrGKilNv~ka~~~ki~~n~Ei~~l~ 833 (1161)
..++| ||+|| +++||++|||||||||||| ||||||||| ||||||||||||||+|+.+||++|+||++|+
T Consensus 33 ~~~lp-KL~Dan~a~~kd~~~~eLflvEGDSAg~~a~sGsak~gRdr--~ailPLRGKiLNv~ka~~~ki~~N~Ei~~ii 109 (803)
T 3qx3_A 33 IKGIP-KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVREASHKQIMENAEINNII 109 (803)
T ss_dssp -CCCT-TCBCCTTTTSTTGGGCEEEEEEHHHHHHHHHTTSTTGGGTT--EEEEEECSSCCCCTTCCHHHHHHCHHHHHHH
T ss_pred cCCCC-ccccccccccCChhheEEEEecCCcchhhhhcccceecccc--cccccccCcchhhhhccHHHHhcCHHHHHHH
Confidence 56789 99999 7899999999999999999 999999998 8999999999999999999999999999999
Q ss_pred HHhCCCCCCC---CCcccccccceEEEeecCCCCChhhHHHHHHHHHHhcHhhhhcCcEEEEcCcEEEEEeCCcceeecC
Q psy13360 834 STLGIGIEQD---EFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRD 910 (1161)
Q Consensus 834 ~alG~~~~~~---~~~~~~lRY~kiiimtDaD~DG~HI~~Llltff~~~~p~Li~~g~v~~~~~Pl~kv~~gk~~~y~~~ 910 (1161)
+|||||+|++ .+|+++||||||||||||||||+|||||||||||||||+||+.||||+|+||||||++||+++|||+
T Consensus 110 ~alG~g~g~~~~~~~d~~~LRY~kIiIMTDADvDGsHI~~LLltff~r~~p~Li~~G~vyia~pPL~kv~~gk~~~~~ys 189 (803)
T 3qx3_A 110 KIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYS 189 (803)
T ss_dssp HHHTCCTTCCCCSTTGGGGCSCSEEEEECCSSHHHHHHHHHHHHHHHHHCGGGGGTTCEEEECC----------------
T ss_pred HHhCCCcCccccccccccccccceEEEecCCCcccccchhHHHHHHHHHhHHHHhcCeEEEecCceEEEecCCeeEEEec
Confidence 9999999953 2589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccceEEEEcCCCcccChHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHhcccCCcCChHHHHHHHH
Q psy13360 911 DIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAK 990 (1161)
Q Consensus 911 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 990 (1161)
++|+++|+.+
T Consensus 190 ~~e~~~~~~~---------------------------------------------------------------------- 199 (803)
T 3qx3_A 190 IPEFDEWKKH---------------------------------------------------------------------- 199 (803)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHH----------------------------------------------------------------------
Confidence 9999998631
Q ss_pred HHHHHhccCceEEEEEeecccceEEEEEEEeecceeeEEecccccCCHHHHHHHHHHHHHHhhhcCCeEEEeccccccce
Q psy13360 991 KIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVIIQKSIGEKIKK 1070 (1161)
Q Consensus 991 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1161)
+ +
T Consensus 200 -----~------------------------------------------------------------------~------- 201 (803)
T 3qx3_A 200 -----I------------------------------------------------------------------E------- 201 (803)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----h------------------------------------------------------------------c-------
Confidence 0 0
Q ss_pred eeecCHHHHHHHHHHhccCCceeeEEecCCCCChhhhhhhccCcC-ceeEEEee-eccHHHHHHHHHHhcCCCchHHHHH
Q psy13360 1071 YTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPM-IRCLLKVK-IKDAISADKIFMTLMGDNVELRRKF 1148 (1161)
Q Consensus 1071 ~~~~~~~~~~~~~~~~~~~~~~iqr~KGLGEmn~~qlwettm~p~-~r~l~~v~-~~d~~~a~~~~~~lmg~~v~~Rr~f 1148 (1161)
+.++++||||||||||||+|||||||||+ +|++++|+ .+|+..++.+|+ |++|++||+|
T Consensus 202 ----------------~~~~~~iqryKGLGem~~~el~ettmd~~~~r~~~~~~~~~d~~~~d~~F~---k~~~~~RK~w 262 (803)
T 3qx3_A 202 ----------------NQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFS---KKKIDDRKEW 262 (803)
T ss_dssp ----------------------------------CHHHHHHHTHHHHEEEEECCSHHHHHHHHHHHC---GGGHHHHHHH
T ss_pred ----------------cCCCcccccccccCCCCHHHHHHHhcCcccceEEEEeCCcchHHHHHHHhc---CCChHHHHHH
Confidence 01348899999999999999999999986 88899998 467777777776 6789999999
Q ss_pred HHHhhc
Q psy13360 1149 IELNAL 1154 (1161)
Q Consensus 1149 i~~~a~ 1154 (1161)
|++|+.
T Consensus 263 i~~~~~ 268 (803)
T 3qx3_A 263 LTNFME 268 (803)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 999983
No 15
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=100.00 E-value=3e-72 Score=672.01 Aligned_cols=201 Identities=64% Similarity=1.043 Sum_probs=185.8
Q ss_pred ccccccCccccCCCCCCCcceEEEEeccCCCcccccccCCcceEeeccCCccccccccchhHHhccHhHHHHHHHhCCCC
Q psy13360 761 DDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQITTLISTLGIGI 840 (1161)
Q Consensus 761 ~~~~lpgKl~dc~~~~~~~~eL~ivEGDSA~gsak~grdr~~qailPLrGKilNv~ka~~~ki~~n~Ei~~l~~alG~~~ 840 (1161)
+..+|||||+||+++||++|||||||||||||||||||||+|||||||||||||||+|+.+||++|+||++|++|||||+
T Consensus 2 ~~~~lpgkl~dc~~~~~~~~eL~lvEGDSA~Gsak~gRd~~~qai~PLrGKiLNv~~a~~~~i~~n~Ei~~i~~alG~~~ 81 (692)
T 2xcs_B 2 DVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGI 81 (692)
T ss_dssp -------CCBCCSCCCTTTCEEEEESSHHHHHHHHHHSCTTTEEEEECCSSCCCTTTSCHHHHHTCHHHHHHHHHHCSCC
T ss_pred CCCCCCchhhcCCCCCcccceEEEecCCcccCcccccccccccccccccCcccchhhCcHHHhhccHHHHHHHHHhCCCc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccceEEEeecCCCCChhhHHHHHHHHHHhcHhhhhcCcEEEEcCcEEEEEeCCcceeecCHHHHHHHHHH
Q psy13360 841 EQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLK 920 (1161)
Q Consensus 841 ~~~~~~~~~lRY~kiiimtDaD~DG~HI~~Llltff~~~~p~Li~~g~v~~~~~Pl~kv~~gk~~~y~~~~~e~~~~~~~ 920 (1161)
| .+||+++||||||||||||||||+|||||||||||||||+||++||||+|+||+
T Consensus 82 g-~~~~~~~lrY~kiiImTDaD~DGsHI~~Llltff~r~~~~Li~~g~vyia~pP~------------------------ 136 (692)
T 2xcs_B 82 G-GDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPT------------------------ 136 (692)
T ss_dssp G-GGCCGGGCSCSEEEECCCSSHHHHHHHHHHHHHHHHHCHHHHHTTCEEECCCCS------------------------
T ss_pred C-ccccccccccceEEEeecCCCCcchhhhHHHHHHHHhChHHhhcCeeEEecCch------------------------
Confidence 9 579999999999999999999999999999999999999999999999999982
Q ss_pred hcccceEEEEcCCCcccChHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHhcccCCcCChHHHHHHHHHHHHHhccCc
Q psy13360 921 IAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSN 1000 (1161)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 1000 (1161)
T Consensus 137 -------------------------------------------------------------------------------- 136 (692)
T 2xcs_B 137 -------------------------------------------------------------------------------- 136 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEeecccceEEEEEEEeecceeeEEecccccCCHHHHHHHHHHHHHHhhhcCCeEEEeccccccceeeecCHHHHH
Q psy13360 1001 IEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVIIQKSIGEKIKKYTANNFYKII 1080 (1161)
Q Consensus 1001 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1080 (1161)
T Consensus 137 -------------------------------------------------------------------------------- 136 (692)
T 2xcs_B 137 -------------------------------------------------------------------------------- 136 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhccCCceeeEEecCCCCChhhhhhhccCcCceeEEEeeeccHHHHHHHHHHhcCCCchHHHHHHHHhhcccccCC
Q psy13360 1081 NYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNID 1160 (1161)
Q Consensus 1081 ~~~~~~~~~~~~iqr~KGLGEmn~~qlwettm~p~~r~l~~v~~~d~~~a~~~~~~lmg~~v~~Rr~fi~~~a~~~~~ld 1160 (1161)
||||||||||+|||||||||++|+|+||+++|+.+|+++|++|||++|+|||+||++||.. .+||
T Consensus 137 --------------~yKGLGem~~~ql~et~m~p~~r~l~~v~~~d~~~~~~~~~~lmg~~~~~Rk~~i~~~~~~-~~ld 201 (692)
T 2xcs_B 137 --------------GYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVY-ANLD 201 (692)
T ss_dssp --------------SCSSGGGSCHHHHHHHHTCTTTCCCEEEECCCHHHHHHHHHHHHSSCHHHHHHHHHHHCCC-CC--
T ss_pred --------------hhcccccCCHHHHHHHhcCccceeEEEEecCchhhHHHHHHHHcCCCchHHHHHHHhcCCc-cccc
Confidence 1899999999999999999999999999999999999999999999999999999999966 3676
Q ss_pred C
Q psy13360 1161 I 1161 (1161)
Q Consensus 1161 ~ 1161 (1161)
+
T Consensus 202 ~ 202 (692)
T 2xcs_B 202 F 202 (692)
T ss_dssp -
T ss_pred c
Confidence 4
No 16
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=100.00 E-value=5.3e-67 Score=561.48 Aligned_cols=217 Identities=58% Similarity=0.980 Sum_probs=188.2
Q ss_pred cccCcchhhccccccceeeccceEEeecCCCCccchhHHhHHHhhHhhhcCCCCCeEEEEEecCCcEEEEECCCcccccc
Q psy13360 345 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDI 424 (1161)
Q Consensus 345 ~~y~~~~i~~L~~~e~vrkRP~mYiGs~~~~~gl~hlv~EivdNsiDe~~~g~~~~I~V~i~~dgsisV~DnGrGIPv~~ 424 (1161)
+.|++++|++|+++||||||||||||||+..+||||+||||||||+||+++|+|++|.|+|+.||+|+|+|||||||++.
T Consensus 3 ~~y~~~~i~~l~~le~vr~rPgmYiG~~~~~~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~~g~i~V~DnGrGIp~~~ 82 (220)
T 4duh_A 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGI 82 (220)
T ss_dssp ------------CHHHHHHSTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHHSCCCEEEEEECTTSCEEEEECSSCCCCSE
T ss_pred CccChhHcEEechhHHHHhCCceEECCCCCcccHHHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCcEEEEECCcCccccc
Confidence 46999999999999999999999999999767999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcceEEEEeeecccCCCCCCceeeecccccchhhHhhhhccEEEEEEEeCCEEEEEEEEcCcccccccccc
Q psy13360 425 KIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTI 504 (1161)
Q Consensus 425 ~~~~~~~~~~~~~e~v~t~l~ag~kfd~~~yk~sgGlhGvG~svvNalS~~~~V~v~r~g~~~~q~f~~G~~~~~~~~~~ 504 (1161)
||+ +|+|++|+|||+||||||||++.|++||||||||+|||||||+||+|+++|+|+.|+|+|++|
T Consensus 83 ~~~----~~~~~~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~svvNAlS~~l~v~v~r~g~~~~~~f~~G---------- 148 (220)
T 4duh_A 83 HPE----EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHG---------- 148 (220)
T ss_dssp ETT----TTEEHHHHHHHSTTCSSCCCTTC--------CCCHHHHHHTEEEEEEEEEETTEEEEEEEETT----------
T ss_pred ccc----cCcchhhheeeecccCCCcCCCccccccCccceecchhcccccceEEEEEECCEEEEEEecCC----------
Confidence 998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCcEEeccCCCCCcEEEEEeCccccccC-CCCHHHHHHHHHhhhccCCCcEEEEeecccceEEEEEeCC
Q psy13360 505 NGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNI-EFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKG 577 (1161)
Q Consensus 505 ~~~~~~~~~~~g~~~~~GT~V~F~PD~~iF~~~-~~~~~~l~~Rl~elA~lnpgl~i~l~d~r~~~~~~f~~~~ 577 (1161)
.++.|+..++.+.++||+|+||||+++|.+. .|++++|.+||+++|||||||+|+|+|+|.+++++|||+|
T Consensus 149 --~~~~~l~~~g~~~~~GT~V~F~Pd~~~F~~~~~~~~~~l~~rlrelA~ln~gv~i~l~der~~~~~~~~y~g 220 (220)
T 4duh_A 149 --VPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEG 220 (220)
T ss_dssp --EESSSCEEEEECSCCEEEEEEEECTTTCCSSCSCCHHHHHHHHHHHHHHCTTSEEEEEETTTCCEEEEC---
T ss_pred --cCcCCceeccccCCCCcEEEEEECHHHhCCcccCCHHHHHHHHHHHHhcCCCCEEEEEccCCCcEEEEEcCC
Confidence 7778888888888999999999999999877 8999999999999999999999999999988888999985
No 17
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=100.00 E-value=5.5e-66 Score=554.59 Aligned_cols=216 Identities=44% Similarity=0.793 Sum_probs=186.7
Q ss_pred cccCcchhhccccccceeeccceEEeecCCCCccchhHHhHHHhhHhhhcCCCCCeEEEEEecCCcEEEEECCCcccccc
Q psy13360 345 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDI 424 (1161)
Q Consensus 345 ~~y~~~~i~~L~~~e~vrkRP~mYiGs~~~~~gl~hlv~EivdNsiDe~~~g~~~~I~V~i~~dgsisV~DnGrGIPv~~ 424 (1161)
..|++++|++|+++||||||||||||||+. +||||+||||||||+||+++|+|+.|.|+|+.||+|+|+|||||||++.
T Consensus 9 ~~y~~~~i~~l~~le~vr~RPgmYiGs~~~-~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~~g~i~V~DnG~GIp~~~ 87 (226)
T 4emv_A 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDG-AGLHHLVWEIVDNAVDEALSGFGDRIDVTINKDGSLTVQDHGRGMPTGM 87 (226)
T ss_dssp --------CCCBCTHHHHHCHHHHHSCSSH-HHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCSB
T ss_pred hcCChhhcEEcchhHHHhhCCceEEcCCCc-ccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCeEEEEEcCCCccccc
Confidence 579999999999999999999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcceEEEEeeecccCCCCCCceeeecccccchhhHhhhhccEEEEEEEeCCEEEEEEEEcCcccccccccc
Q psy13360 425 KIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTI 504 (1161)
Q Consensus 425 ~~~~~~~~~~~~~e~v~t~l~ag~kfd~~~yk~sgGlhGvG~svvNalS~~~~V~v~r~g~~~~q~f~~G~~~~~~~~~~ 504 (1161)
| + +|+|++|+|||+||||||||+++|++||||||||+|||||||+||+|+++|+|+.|+|+|++||
T Consensus 88 h-~----~~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~svvNALS~~l~v~v~r~g~~~~q~f~~Gg--------- 153 (226)
T 4emv_A 88 H-A----MGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGG--------- 153 (226)
T ss_dssp C-G----GGCBHHHHHHHCBC--------------CGGGCCHHHHHHTEEEEEEEEEETTEEEEEEEETTT---------
T ss_pred c-c----cCceehheeEEeecccCccCccceEeccccccccchhhhhcccceEEEEEeCCcEEEEEECCCC---------
Confidence 9 7 8999999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCccccCcEEeccC--CCCCcEEEEEeCccccccCCCCHHHHHHHHHhhhccCCCcEEEEeecccceEEEEEeCC
Q psy13360 505 NGISVSPIKIIGDT--NKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKG 577 (1161)
Q Consensus 505 ~~~~~~~~~~~g~~--~~~GT~V~F~PD~~iF~~~~~~~~~l~~Rl~elA~lnpgl~i~l~d~r~~~~~~f~~~~ 577 (1161)
.++.+++++|.+ .++||+|+||||+++|++..|++++|.+||+++|||||||+|+|+|+|.+++++|||+|
T Consensus 154 --~~~~~l~~ig~~~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~rlrelA~ln~gv~i~l~der~~~~~~f~y~g 226 (226)
T 4emv_A 154 --KPVTTLKKIGTALKSKTGTKVTFMPDATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAIEFHYEN 226 (226)
T ss_dssp --EESSCSEEEEECCTTCCEEEEEEEECTTTCSCCCCCHHHHHHHHHHHHHHHCSCEEEEEETTTCCEEEECCCC
T ss_pred --EEcCCceEecccCCCCCCeEEEEEECHHHcCCCCcCHHHHHHHHHHHhhcCCCCEEEEEecCCCcEEEEEcCC
Confidence 677788888876 68999999999999999999999999999999999999999999999988788999985
No 18
>3t0p_A DNA polymerase III, beta subunit; DNA clamp, structural genomics, joint center for structural JCSG, protein structure initiative; HET: DNA MSE; 2.26A {Eubacterium rectale}
Probab=100.00 E-value=1.7e-57 Score=528.40 Aligned_cols=333 Identities=24% Similarity=0.438 Sum_probs=311.7
Q ss_pred CceEEEccHHHHHHHHHHhhccccCCCchhhhccEEEEEECCeEEEEEecceeEEEEEeeecccCCceEEEEechhHHHH
Q psy13360 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDI 80 (1161)
Q Consensus 1 Mk~~v~i~k~~L~~aL~~v~~~v~~k~~~piL~~Iliea~~~~L~ltatD~e~~i~~~i~a~~~~~~G~v~V~ak~l~~I 80 (1161)
||| .|+|++|+++|+++++++++|++.|||+||+|++++++|+|+|||++++++++++++. .++|+++||||+|.+|
T Consensus 2 Mkf--~i~r~~L~~~l~~v~~~v~~r~t~pIL~~ili~a~~~~L~ltatD~ei~i~~~i~a~v-~~~G~~~v~ak~l~di 78 (371)
T 3t0p_A 2 MKL--ICSKANLLKGVNIVSKAVPTRTTMAILECILIDASANEIKLMANDMELGIETIIDGTI-EERGIIALDAKIFSEI 78 (371)
T ss_dssp CEE--EEEHHHHHHHHHHHGGGSCSSCSSGGGGEEEEEESSSSEEEEEECSSEEEEEEECCEE-EECEEEEEEHHHHHHH
T ss_pred eEE--EEEHHHHHHHHHHHHhhcCCCCChHHhCCEEEEEECCEEEEEEeCcEEEEEEEEEEEE-ccCeEEEEEHHHHHHH
Confidence 999 4569999999999999999999999999999999999999999999999999999876 4689999999999999
Q ss_pred HhcCCCCccEEEEEeCc-EEEEEECcEEEEEccCCCCCCCCccCCCCcceEEEEcHHHHHHHHHhhccccccccccccee
Q psy13360 81 LRSLPETEKVTIYIENK-HMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLN 159 (1161)
Q Consensus 81 vk~Lp~~~~I~ie~~~~-~l~I~sG~~~~~l~~~~~edfP~~~~~~~~~~~~~i~~~~L~~aI~~v~~a~s~~~trpiL~ 159 (1161)
+|+||++ +|+++.+++ ++.|+||+++|+|+++++++||.+|..+. ...+.+++..|+++|++|.+|++++++||+|+
T Consensus 79 vr~Lp~~-~i~l~~~~~~~l~I~~g~s~f~l~~~~~~dfP~lp~~~~-~~~~~i~~~~L~~~I~~t~fA~s~de~r~~L~ 156 (371)
T 3t0p_A 79 VRKLPDN-DVTIETDASFKTVISCEKAKFNIIGKSGDDFSYIPYVER-NESIVLSQFTLKEVIRQTIFSIADNDNNKLMT 156 (371)
T ss_dssp HHHSCSS-EEEEEECTTCEEEEEETTEEEEEECBCGGGSCCCCCCCC-CSEEEEEHHHHHHHHHTTGGGSCSSSSSTGGG
T ss_pred HHhCCCC-cEEEEECCCCeEEEEECCEEEEEccCCHHHCCCCCCCCC-CeEEEECHHHHHHHHhheeEEeeCCCCchhce
Confidence 9999998 699998765 99999999999999999999999997654 56899999999999999999999999999999
Q ss_pred eEEEEEECCEEEEEEecceEEEEEEEecCCCCCCcceEEEehhhHHHHHhhhcC-CCCcEEEEEeCcEEEEEECcEEEEE
Q psy13360 160 GLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLEN-KENPVELKISNNQIKIIFSNIEIIS 238 (1161)
Q Consensus 160 GV~~~~~~~~L~lvATDg~RLa~~~i~~~~~~~~~~~viIP~k~L~eL~klL~~-~~~~V~i~~~~~~l~f~~~~~~~~~ 238 (1161)
||+|+++++.|+++|||||||++++.+++... .+++++||+|.+.+|.|+|++ .+++|+|.++++++.|.+++..+.|
T Consensus 157 Gv~~~~~~~~l~~vATDg~RLa~~~~~~~~~~-~~~~~iIP~k~l~el~kll~~~~~~~V~i~~~~~~i~f~~~~~~~~s 235 (371)
T 3t0p_A 157 GELFEIEENKLRVVSLDGHRISIRYIEMKNHY-DSKKVVVPGKTLQEISKIIPGSADEDVVIYITNNHIVFEFENTTVVS 235 (371)
T ss_dssp EEEEEEEEEEEEEEEECSSEEEEEEEEEEEEE-EEEEEEEEHHHHHHHHHHCCCCTTSEEEEEEETTEEEEEETTEEEEE
T ss_pred EEEEEEECCEEEEEEecceEEEEEEeccCCCC-CceEEEEEHHHHHHHHHhcCcCCCceEEEEEcCCEEEEEECCEEEEE
Confidence 99999999999999999999999998876432 246899999999999999973 4578999999999999999999999
Q ss_pred eecCCCCCCccccccCCcceEEEEeHHHHHHHHHHhhccccCC-cceEEEEEeCCEEEEEEEcCCccccceeeeeeeeCC
Q psy13360 239 KLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDK-LKGVRLVIKPNYLKITVSSSNREKASEELEINYNGK 317 (1161)
Q Consensus 239 rli~g~fPdy~~vip~~~~~~i~v~r~~L~~aL~Rv~~~s~~~-~~~V~l~~~~~~L~isa~d~~~g~~~E~i~~~~~Ge 317 (1161)
||++|+||||++++|.+++..++++|++|++||+|++++++++ .+.|+|+++++.|++++.+ +.|+++|+++|+++|+
T Consensus 236 rLidG~fPdy~~viP~~~~~~~~v~r~~l~~al~Rvs~ls~e~~~~~V~l~~~~~~l~i~~~~-~~g~a~E~i~~~~~Ge 314 (371)
T 3t0p_A 236 RLIEGEYFKIDQMLSSDYDTKVRINKRELLDCIDRATLLVKEGDKKPIIMNITDGNMELRINS-FIGSMNEDIDIDKDGK 314 (371)
T ss_dssp ECCCSCCCCCGGGCCCCCSEEEEEEHHHHHHHHHHHHTTCCC-CCCCEEEEEETTEEEEEEEC-SSEEEEEEEECEEEEC
T ss_pred EEecccCCChhhhccccCCEEEEEEHHHHHHHHHHHHHhhccCCCceEEEEEeCCEEEEEEeC-CCCcEEEEEEEEecCC
Confidence 9999999999999999999999999999999999999999875 4789999999999999976 7899999999999999
Q ss_pred ccceeeechhhhh--hcccCcccccc
Q psy13360 318 DKNFIKFLIKIML--LKNKNSYDIQD 341 (1161)
Q Consensus 318 ~~~ii~fn~~yLl--L~~~~~d~i~l 341 (1161)
+++ ++||++||+ |+++++++|.|
T Consensus 315 ~~~-I~FN~~yLld~L~~~~~~~v~l 339 (371)
T 3t0p_A 315 DIM-IGFNPKFFIDALRVIDEEEVNL 339 (371)
T ss_dssp CEE-EEECHHHHHHHHTTCCCSEEEE
T ss_pred cEE-EEEchHHHHHHHhCCCCCeEEE
Confidence 999 999999999 99999999988
No 19
>3p16_A DNA polymerase III subunit beta; DNA polymerase III sliding clamp, transferase; HET: DNA; 2.89A {Mycobacterium tuberculosis} PDB: 3rb9_A*
Probab=100.00 E-value=8.6e-57 Score=526.45 Aligned_cols=332 Identities=16% Similarity=0.302 Sum_probs=312.0
Q ss_pred CceEEEccHHHHHHHHHHhhccccCCCchhhhccEEEEEECCeEEEEEecceeEEEEEeeecccCCceEEEEechhHHHH
Q psy13360 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDI 80 (1161)
Q Consensus 1 Mk~~v~i~k~~L~~aL~~v~~~v~~k~~~piL~~Iliea~~~~L~ltatD~e~~i~~~i~a~~~~~~G~v~V~ak~l~~I 80 (1161)
||| .|+|++|+++|+++++++++|++.|||+||+|++++++|+|+|||++++++++++++. .++|+++||+|+|.+|
T Consensus 19 Mkf--~i~r~~L~~aL~~v~~~v~~r~t~PIL~~ili~a~~~~L~ltatDlei~i~~~i~a~v-~e~G~i~v~ak~l~dI 95 (408)
T 3p16_A 19 LTF--RLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEI-VSPGSVLVSGRLLSDI 95 (408)
T ss_dssp CEE--EEEHHHHHHHHHHHTTSSCSCCSSGGGSEEEEEECSSEEEEEECCSSCCEEEEEECCC-SBCEEEEEEHHHHHHH
T ss_pred eEE--EEEHHHHHHHHHHHHhhhCCCCChHHhCcEEEEEECCEEEEEEECCceEEEEEEEEEe-cCCeEEEEEHHHHHHH
Confidence 888 5569999999999999999999999999999999999999999999999999999975 5689999999999999
Q ss_pred HhcCCCCccEEEEEeCcEEEEEECcEEEEEccCCCCCCCCccCCCCcceEEEEcHHHHHHHHHhhcccccccccccceee
Q psy13360 81 LRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNG 160 (1161)
Q Consensus 81 vk~Lp~~~~I~ie~~~~~l~I~sG~~~~~l~~~~~edfP~~~~~~~~~~~~~i~~~~L~~aI~~v~~a~s~~~trpiL~G 160 (1161)
+|+||++ +|+++.+++++.|+||+++|+|+++++++||.+|..+. ..+.|++..|+++|++|.+|++++++||+|+|
T Consensus 96 vr~Lp~~-~I~l~~~~~~l~I~~g~s~f~L~~l~~~dfP~lp~~~~--~~~~i~~~~L~~~I~~t~fA~s~de~rp~L~G 172 (408)
T 3p16_A 96 TRALPNK-PVDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPTLPE--ETGLLPAELFAEAISQVAIAAGRDDTLPMLTG 172 (408)
T ss_dssp HHHSCSS-EEEEEEETTEEEEEBTTEEEEEEEECTTTSCCCCCCCC--EEEEECHHHHHHHHHHHTTSSCCSSSCCCSCE
T ss_pred HHhCCCC-cEEEEEeCCEEEEEECCEEEEEecCCHHHCCCCCCCCC--cEEEEcHHHHHHHHhhheecccCccchhhceE
Confidence 9999998 69999999999999999999999999999999997653 37999999999999999999999999999999
Q ss_pred EEEEEECCEEEEEEecceEEEEEEEecCCCCC-CcceEEEehhhHHHHHhhhcCCCCcEEEEEeCc-------EEEEEEC
Q psy13360 161 LLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFS-SCSDIIIPRKTVFTLQRLLENKENPVELKISNN-------QIKIIFS 232 (1161)
Q Consensus 161 V~~~~~~~~L~lvATDg~RLa~~~i~~~~~~~-~~~~viIP~k~L~eL~klL~~~~~~V~i~~~~~-------~l~f~~~ 232 (1161)
|+|+++++.|+++|||||||+++.++++.... .+++++||+|.+.+|.|+|.+ +++|+|.++++ ++.|.++
T Consensus 173 v~~~~~~~~l~~VATDghRLA~~~~~~~~~~~~~~~~~iIP~k~l~el~kll~~-~~~V~i~~~~~~~~~~~~~i~f~~~ 251 (408)
T 3p16_A 173 IRVEILGETVVLAATDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIG-GSDVRLSLGTGPGVGKDGLLGISGN 251 (408)
T ss_dssp EEEEEETTEEEEEEECSSEEEEEEEECBCSSSSCEEEEEEEHHHHHHHHHTCCS-SSCEEEESCSSSSCCSSCCCEEECS
T ss_pred EEEEEECCEEEEEEcCcceEEEEeccccccCCCCceeEEEEHHHHHHHHHhcCC-CCcEEEEEcCCcccccceEEEEEEC
Confidence 99999999999999999999999998764322 246899999999999999964 57899999985 8999999
Q ss_pred cEEEEEeecCCCCCCccccccCCcceEEEEeHHHHHHHHHHhhccccCCcceEEEEEeCCEEEEEEEcCCccccceeeee
Q psy13360 233 NIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASEELEI 312 (1161)
Q Consensus 233 ~~~~~~rli~g~fPdy~~vip~~~~~~i~v~r~~L~~aL~Rv~~~s~~~~~~V~l~~~~~~L~isa~d~~~g~~~E~i~~ 312 (1161)
+..+.|||++|+||||++|+|.+++..++++|++|++||+|+++++ ++++.|+|+++++.|++++.+++.|+++|+++|
T Consensus 252 ~~~~~srLIdG~fPdy~~vIP~~~~~~v~v~r~~l~~al~Rvslls-~~~~~V~l~~~~~~l~i~a~~~e~g~a~E~i~~ 330 (408)
T 3p16_A 252 GKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVA-DRGAQVRMEFADGSVRLSAGADDVGRAEEDLVV 330 (408)
T ss_dssp SEEEECCCCSSCCCCGGGTCCSSCSEEEEEEHHHHHHHHHHHHTTC-CSSCCEEEEEETTEEEEEEECSSSCEEEEEEEC
T ss_pred CEEEEEEecccCCCChhhhCCCCCCEEEEEEHHHHHHHHHHHHhhh-cCCceEEEEEeCCEEEEEEeCCCCceEEEEEEE
Confidence 9999999999999999999999999999999999999999999996 567889999999999999999999999999999
Q ss_pred eeeCCccceeeechhhhh--hcccCcccccc
Q psy13360 313 NYNGKDKNFIKFLIKIML--LKNKNSYDIQD 341 (1161)
Q Consensus 313 ~~~Ge~~~ii~fn~~yLl--L~~~~~d~i~l 341 (1161)
+|+|++++ ++||++||+ |+++++++|.|
T Consensus 331 ~~~Ge~l~-I~FN~~YLlD~L~~i~~e~V~l 360 (408)
T 3p16_A 331 DYAGEPLT-IAFNPTYLTDGLSSLRSERVSF 360 (408)
T ss_dssp EEEESCCE-EEECHHHHHHHHHHSCSSEEEE
T ss_pred EEeCCcEE-EEEeHHHHHHHHhccCCCeEEE
Confidence 99999999 999999999 99999999988
No 20
>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A* 1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 3q4j_A* 3q4k_A* 3qsb_A* 3q4l_A* 2xur_A* 1jql_A* 1jqj_A* 3f1v_A* 3pwe_A*
Probab=100.00 E-value=1.3e-56 Score=520.62 Aligned_cols=335 Identities=34% Similarity=0.605 Sum_probs=315.4
Q ss_pred CceEEEccHHHHHHHHHHhhccccCCCchhhhccEEEEEECCeEEEEEecceeEEEEEeee-cccCCceEEEEechhHHH
Q psy13360 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAV-GYGNSSINIIVAARKFID 79 (1161)
Q Consensus 1 Mk~~v~i~k~~L~~aL~~v~~~v~~k~~~piL~~Iliea~~~~L~ltatD~e~~i~~~i~a-~~~~~~G~v~V~ak~l~~ 79 (1161)
|||+ |+|++|+++|+++++++++|++.|||+||+|++++++|+|+|||+++++++.+++ +. .++|+++||||.|.+
T Consensus 1 Mkf~--i~~~~L~~~l~~v~~~v~~r~t~piL~~ili~a~~~~L~l~atD~ei~i~~~i~~~~v-~~~G~~~v~ak~l~d 77 (366)
T 3d1g_A 1 MKFT--VEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQP-HEPGATTVPARKFFD 77 (366)
T ss_dssp CEEE--EEHHHHHHHHHHHSTTCSSCCCSGGGGEEEEEEETTEEEEEEECSSEEEEEEEECCSC-CBCEEEEEEHHHHHH
T ss_pred CEEE--EEHHHHHHHHHHHHhhcCCCCChhHhcCeEEEEeCCcEEEEEecceEEEEEEEEccee-ccCeEEEEEhHHHHH
Confidence 9994 5699999999999999999999999999999999999999999999999999998 54 578999999999999
Q ss_pred HHhcCCCCccEEEEEeCcEEEEEECcEEEEEccCCCCCCCCccCCCCcceEEEEcHHHHHHHHHhhccccccccccccee
Q psy13360 80 ILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLN 159 (1161)
Q Consensus 80 Ivk~Lp~~~~I~ie~~~~~l~I~sG~~~~~l~~~~~edfP~~~~~~~~~~~~~i~~~~L~~aI~~v~~a~s~~~trpiL~ 159 (1161)
|+|+||++++|+++.+++.+.|+||+++|+|+++++++||.+|..+. ...+.+++..|+++|++|.||++++++||+|+
T Consensus 78 ivr~Lp~~~~i~~~~~~~~l~I~~g~s~f~l~~~~~~~fP~~~~~~~-~~~~~i~~~~l~~~i~~t~fA~s~de~r~~L~ 156 (366)
T 3d1g_A 78 ICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQS-EVEFTLPQATMKRLIEATQFSMAHQDVRYYLN 156 (366)
T ss_dssp HHHHSCTTCEEEEEEETTEEEEEETTEEEEEECBCGGGSCCCCCCCC-SEEEEECHHHHHHHHHHHGGGSCSSCSSGGGS
T ss_pred HHHcCCCCCcEEEEEeCCEEEEEECCEEEEEcCCCHHHCCCCCCCCC-ceEEEECHHHHHHHHhheeEEeccCCCccceE
Confidence 99999986569999888899999999999999999999999997643 46899999999999999999999999999999
Q ss_pred eEEEEEECCEEEEEEecceEEEEEEEecCCCCCCcceEEEehhhHHHHHhhhcCCCCcEEEEEeCcEEEEEECcEEEEEe
Q psy13360 160 GLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISK 239 (1161)
Q Consensus 160 GV~~~~~~~~L~lvATDg~RLa~~~i~~~~~~~~~~~viIP~k~L~eL~klL~~~~~~V~i~~~~~~l~f~~~~~~~~~r 239 (1161)
||+|+++++.|+++|||||||+++.++++...+ +++++||+|.+.+|.|+|.+.++.|.|.++++++.|.+++..+.+|
T Consensus 157 Gv~~~~~~~~l~~vATDg~RLa~~~~~~~~~~~-~~~~iiP~k~l~el~kll~~~~~~v~i~~~~~~i~f~~~~~~~~sr 235 (366)
T 3d1g_A 157 GMLFETEGEELRTVATDGHRLAVCSMPIGQSLP-SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSK 235 (366)
T ss_dssp EEEEEEEEEEEEEEEECSSEEEEEEEEEEEEEE-EEEEEEEHHHHHHHHHTCCSSSCCEEEEECSSEEEEEETTEEEEEE
T ss_pred EEEEEEeCCEEEEEEeCCccEEEEEeccCCCCc-ccEEEEEHHHHHHHHHhcccCCccEEEEEcCCEEEEEECCEEEEEE
Confidence 999999999999999999999999988754322 3689999999999999997645679999999999999999999999
Q ss_pred ecCCCCCCccccccCCcceEEEEeHHHHHHHHHHhhccccCCcceEEEEEeCCEEEEEEEcCCccccceeeeeeeeCCcc
Q psy13360 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASEELEINYNGKDK 319 (1161)
Q Consensus 240 li~g~fPdy~~vip~~~~~~i~v~r~~L~~aL~Rv~~~s~~~~~~V~l~~~~~~L~isa~d~~~g~~~E~i~~~~~Ge~~ 319 (1161)
+++|+||||++++|.+++..++++|++|++||+|++++++++.+.|+|.++++.|++++.+++.|+++|+++++++|+++
T Consensus 236 Lidg~fPdy~~viP~~~~~~~~v~~~~l~~al~Rvsils~~~~~~v~l~~~~~~l~i~a~~~e~g~a~e~l~~~~~Ge~~ 315 (366)
T 3d1g_A 236 LVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEM 315 (366)
T ss_dssp CCSSCCCCHHHHSCSCCCEEEEEEHHHHHHHHHHHHHTSCTTTCEEEEEEETTEEEEEEECTTCCEEEEEEECBCCSCCE
T ss_pred EecccCCChhhcCCCCCCeEEEEEHHHHHHHHHHHHHHhcCCCceEEEEEeCCEEEEEEcCCCCceEEEEEEEEecCCcE
Confidence 99999999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred ceeeechhhhh--hcccCcccccc
Q psy13360 320 NFIKFLIKIML--LKNKNSYDIQD 341 (1161)
Q Consensus 320 ~ii~fn~~yLl--L~~~~~d~i~l 341 (1161)
+ ++||++||+ |+++++++|.|
T Consensus 316 ~-I~fN~~YL~d~L~~~~~~~v~l 338 (366)
T 3d1g_A 316 E-IGFNVSYVLDVLNALKCENVRM 338 (366)
T ss_dssp E-EEEEHHHHHHHHHHCCSSEEEE
T ss_pred E-EEEcHHHHHHHHhcCCCCEEEE
Confidence 9 999999999 99999999888
No 21
>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A*
Probab=100.00 E-value=5.8e-56 Score=517.40 Aligned_cols=335 Identities=25% Similarity=0.400 Sum_probs=312.7
Q ss_pred CceEEEccHHHHHHHHHHhhccccCCCchhhhccEEEEEECCeEEEEEecceeEEEEEeeec------ccCCceEEEEec
Q psy13360 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVG------YGNSSINIIVAA 74 (1161)
Q Consensus 1 Mk~~v~i~k~~L~~aL~~v~~~v~~k~~~piL~~Iliea~~~~L~ltatD~e~~i~~~i~a~------~~~~~G~v~V~a 74 (1161)
||| .|+|++|+++|+++++++++|++.|||+||+|++++++|+|+|||++++++++++++ ...++|+++|||
T Consensus 2 Mkf--~i~~~~L~~~l~~v~~~v~~r~t~PiL~~ill~a~~~~L~ltatD~ei~i~~~i~~~~~~~~~~v~~~G~~~v~a 79 (378)
T 2avt_A 2 IQF--SINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVSNENAGLLITSPGAILLEA 79 (378)
T ss_dssp CEE--EEEHHHHHHHHHHHGGGCCSSCSSGGGGEEEEEEETTEEEEEEECSSEEEEEEEEC-----CEEEEECEEEEEEH
T ss_pred EEE--EEEHHHHHHHHHHHHhhcCCCCChhHhcCeEEEEECCEEEEEEECCeEEEEEEEecccccccceeccCeEEEEEh
Confidence 888 556999999999999999999999999999999999999999999999999999883 234689999999
Q ss_pred hhHHHHHhcCCCCccEEEEEeC-cEEEEEECcEEEEEccCCCCCCCCccCCCCcceEEEEcHHHHHHHHHhhcccccccc
Q psy13360 75 RKFIDILRSLPETEKVTIYIEN-KHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQD 153 (1161)
Q Consensus 75 k~l~~Ivk~Lp~~~~I~ie~~~-~~l~I~sG~~~~~l~~~~~edfP~~~~~~~~~~~~~i~~~~L~~aI~~v~~a~s~~~ 153 (1161)
|.|.+|+|+||++ +|+++.++ +.+.|+||+++|+|+++++++||.+|..+. ...+.+++..|+++|++|.+|+++++
T Consensus 80 k~l~divr~Lp~~-~v~~~~~~~~~l~I~~g~s~f~l~~~~~~~fP~l~~~~~-~~~~~i~~~~l~~~i~~t~fA~s~de 157 (378)
T 2avt_A 80 SFFINIISSLPDI-SINVKEIEQHQVVLTSGKSEITLKGKDVDQYPRLQEVST-ENPLILKTKLLKSIIAETAFAASLQE 157 (378)
T ss_dssp HHHHHHHHHCSSS-EEEEEEETTTEEEEEETTEEEEEECBCGGGSCCCCCCCC-SSCEEEEHHHHHHHHHHHGGGSCCCT
T ss_pred HHHHHHHHhCCCC-cEEEEECCCCEEEEEECCEEEEEccCCHHHCCCCCCCCC-CeEEEECHHHHHHHHhheEEEEECCC
Confidence 9999999999997 79998764 489999999999999999999999987643 45799999999999999999999999
Q ss_pred cccceeeEEEEEECC-EEEEEEecceEEEEEEEecCCCCCCcceEEEehhhHHHHHhhhcCCCCcEEEEEeCcEEEEEEC
Q psy13360 154 IRYYLNGLLLSFQKK-NIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFS 232 (1161)
Q Consensus 154 trpiL~GV~~~~~~~-~L~lvATDg~RLa~~~i~~~~~~~~~~~viIP~k~L~eL~klL~~~~~~V~i~~~~~~l~f~~~ 232 (1161)
+||+|+||+|+++++ .|+++|||||||+.+.++++... .+++++||+|.+.+|.|+|.+.++.|.|.++++++.|.++
T Consensus 158 ~r~~L~Gv~~~~~~~~~l~~vATDg~RLa~~~~~~~~~~-~~~~~iiP~k~l~el~kll~~~~~~v~i~~~~~~i~f~~~ 236 (378)
T 2avt_A 158 SRPILTGVHIVLSNHKDFKAVATDSHRMSQRLITLDNTS-ADFMVVLPSKSLREFSAVFTDDIETVEVFFSPSQILFRSE 236 (378)
T ss_dssp TSGGGGEEEEEEETTTEEEEEEECSSEEEEEEEECSSCC-CCEEEEEEHHHHHHHHHHSCTTCCEEEEEECSSEEEEECS
T ss_pred CcceeEEEEEEECCCCeEEEEEecCeeEEEEEeccCCCC-CccEEEEEhHHHHHHHHhcccCCceEEEEEcCCEEEEEEC
Confidence 999999999999999 99999999999999999886543 3579999999999999999854667999999999999999
Q ss_pred cEEEEEeecCCCCCCccccccCCcceEEEEeHHHHHHHHHHhhccccC-CcceEEEEEeCCEEEEEEEcCCccccceeee
Q psy13360 233 NIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISND-KLKGVRLVIKPNYLKITVSSSNREKASEELE 311 (1161)
Q Consensus 233 ~~~~~~rli~g~fPdy~~vip~~~~~~i~v~r~~L~~aL~Rv~~~s~~-~~~~V~l~~~~~~L~isa~d~~~g~~~E~i~ 311 (1161)
+..+.+||++|+||||++++|.+++..++++|++|++||+|+++++++ +.+.|+|.++++.|++++.+++.|+++|+++
T Consensus 237 ~~~~~srLidg~fPdy~~viP~~~~~~~~v~~~~l~~al~Rvs~ls~~~~~~~v~l~~~~~~l~l~a~~~e~g~a~e~l~ 316 (378)
T 2avt_A 237 HISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQNHISAHVNSPEVGKVNEDLD 316 (378)
T ss_dssp SEEEEEECCCSCCCCCGGGSCCCCSEEEEEEHHHHHHHHHHHHHHHTTSTTCCEEEEEETTEEEEEEEETTTEEEEEECC
T ss_pred CEEEEEEEecccCCChhhcCCCCCCEEEEEEHHHHHHHHHHHHHHhccCCCceEEEEEeCCEEEEEEeCCCCceeEEEEe
Confidence 999999999999999999999999999999999999999999999987 7788999999999999999999999999999
Q ss_pred e-eeeCCccceeeechhhhh--hcccCcccccc
Q psy13360 312 I-NYNGKDKNFIKFLIKIML--LKNKNSYDIQD 341 (1161)
Q Consensus 312 ~-~~~Ge~~~ii~fn~~yLl--L~~~~~d~i~l 341 (1161)
+ +++|++++ ++||++||+ |+++++++|.|
T Consensus 317 ~~~~~Ge~~~-I~FN~~YL~d~L~~~~~~~v~l 348 (378)
T 2avt_A 317 IVSQSGSDLT-ISFNPTYLIESLKAIKSETVKI 348 (378)
T ss_dssp CSEEEECCEE-EEECHHHHHHHHHTCCSSEEEE
T ss_pred eeeecCCeEE-EEEcHHHHHHHHhcCCCCEEEE
Confidence 9 79999999 999999999 99999999888
No 22
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=100.00 E-value=2.4e-56 Score=472.35 Aligned_cols=193 Identities=50% Similarity=0.838 Sum_probs=182.8
Q ss_pred cCcchhhccccccceeeccceEEeecCCCCccchhHHhHHHhhHhhhcCCCCCeEEEEEecCCcEEEEECCCcccccccc
Q psy13360 347 YSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDIKI 426 (1161)
Q Consensus 347 y~~~~i~~L~~~e~vrkRP~mYiGs~~~~~gl~hlv~EivdNsiDe~~~g~~~~I~V~i~~dgsisV~DnGrGIPv~~~~ 426 (1161)
|++++|++|+|+||||||||||||||+. +||||+|+||||||+||++||||+.|.|+|+.||+|+|+|||||||++.|+
T Consensus 2 y~~~~i~~l~~le~vr~RPgmYiGs~~~-~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~~g~i~V~DnG~Gip~~~h~ 80 (198)
T 3ttz_A 2 YGAGQIQVLEGLEAVRKRPGMYIGSTSE-RGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDNGRGIPVDIQE 80 (198)
T ss_dssp CCHHHHHHHHHHHHHHHSHHHHHSCSSH-HHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEGGGEEEEEECSSCCCCSBCT
T ss_pred CChhHeEEecchHHHhcCCCcEECCCCC-cchHHHHHHHHHHHHhHHhcCCCcEEEEEEeCCCeEEEEECCCCccccccC
Confidence 9999999999999999999999999998 899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcceEEEEeeecccCCCCCCceeeecccccchhhHhhhhccEEEEEEEeCCEEEEEEEEcCccccccccccCC
Q psy13360 427 DDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTING 506 (1161)
Q Consensus 427 ~~~~~~~~~~~e~v~t~l~ag~kfd~~~yk~sgGlhGvG~svvNalS~~~~V~v~r~g~~~~q~f~~G~~~~~~~~~~~~ 506 (1161)
. +|++++|++|| +|||||||+||+|+++|+|+.|+|+|++|
T Consensus 81 ~----~~~~~~e~i~t-----------------------~SvVNALS~~l~v~v~r~g~~~~~~f~~G------------ 121 (198)
T 3ttz_A 81 K----MGRPAVEVILT-----------------------SSVVNALSQDLEVYVHRNETIYHQAYKKG------------ 121 (198)
T ss_dssp T----TSSBHHHHHHH-----------------------TCHHHHTEEEEEEEEEETTEEEEEEEETT------------
T ss_pred c----CCCccccccce-----------------------eEehhhhcCeEEEEEEECCcEEEEEEeCC------------
Confidence 8 89999999887 99999999999999999999999999999
Q ss_pred ccccCcEEeccCCCCCcEEEEEeCcccc-ccCCCCHHHHHHHHHhhhccCCCcEEEEeecccc---eEEEEEeCCch
Q psy13360 507 ISVSPIKIIGDTNKQGTKIHFWVDEKIF-SNIEFHYEILKKRIRELSFLNNGVCITLIDERIK---KKEIFEFKGGT 579 (1161)
Q Consensus 507 ~~~~~~~~~g~~~~~GT~V~F~PD~~iF-~~~~~~~~~l~~Rl~elA~lnpgl~i~l~d~r~~---~~~~f~~~~Gi 579 (1161)
.++.++.+++.+.++||+|+|+||+++| ++..|+++.|.+||+++|||||||+|+|+|+|.+ ++++|||+|||
T Consensus 122 ~~~~~l~~i~~~~~~GT~V~F~Pd~~iF~~~~~~~~~~l~~rlrelA~ln~gv~i~l~der~~~~~~~~~f~~~gGi 198 (198)
T 3ttz_A 122 VPQFDLKEVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGI 198 (198)
T ss_dssp EESSCCEEEEECSCCEEEEEEEECTTTCCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEECSSTTSCEEEEECCC---
T ss_pred EECCCceeccCCCCCCcEEEEEECHHHhccCCccCHHHHHHHHHHHhhcCCCCEEEEEeecCCCCcceEEEEcCCCC
Confidence 7778888888888999999999999999 8889999999999999999999999999999975 56899999996
No 23
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomic center for structural genomics, JCSG, protein structure INI PSI, transferase; HET: DNA; 2.00A {Thermotoga maritima} SCOP: d.131.1.1 d.131.1.1 d.131.1.1
Probab=100.00 E-value=1.1e-51 Score=482.44 Aligned_cols=334 Identities=22% Similarity=0.401 Sum_probs=312.9
Q ss_pred CceEEEccHHHHHHHHHHhhccccCCCchhhhccEEEEEECCeEEEEEecceeEEEEEeeecccCCceEEEEechhHHHH
Q psy13360 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDI 80 (1161)
Q Consensus 1 Mk~~v~i~k~~L~~aL~~v~~~v~~k~~~piL~~Iliea~~~~L~ltatD~e~~i~~~i~a~~~~~~G~v~V~ak~l~~I 80 (1161)
|+| +|++++|+++|+++.++++++++.|+|+||+|++++++|+++|||+++.+++.++++...++|+++||+|.|.+|
T Consensus 13 ~~~--~i~~~~L~~~l~~v~~av~~~~t~piL~gvll~~~~~~L~l~aTD~~~~~~~~i~~~~~~~~g~i~vpak~l~ei 90 (378)
T 1vpk_A 13 MKV--TVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAAEISGEARFVVPGDVIQKM 90 (378)
T ss_dssp EEE--EEEHHHHHHHHHHHGGGCCCSSSCGGGGEEEEEEETTEEEEEEECSSEEEEEECCCSEEEECEEEEEEC-CHHHH
T ss_pred EEE--EEEHHHHHHHHHHHHhhcCCCCChhHhCCEEEEEECCEEEEEEEcCceEEEEEEEEEEccCceEEEEEhHHHHHH
Confidence 667 567999999999999999999999999999999999999999999999999999876423579999999999999
Q ss_pred HhcCCCCccEEEEEeCcEEEEEECcEEEEEccCCCCCCCCccCCCCcceEEEEcHHHHHHHHHhhcccccccccccceee
Q psy13360 81 LRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNG 160 (1161)
Q Consensus 81 vk~Lp~~~~I~ie~~~~~l~I~sG~~~~~l~~~~~edfP~~~~~~~~~~~~~i~~~~L~~aI~~v~~a~s~~~trpiL~G 160 (1161)
+|+||++ +|+++.+++++.|++|+++|+++++++++||.++..+. ...+.+++..|.++|++|.+|++++++||+|+|
T Consensus 91 ~r~Lp~~-~V~i~~~~~~l~i~~g~~~f~l~~l~~~~fP~~~~~~~-~~~~~i~~~~L~~~I~r~~~a~s~~e~r~~l~G 168 (378)
T 1vpk_A 91 VKVLPDE-ITELSLEGDALVISSGSTVFRITTMPADEFPEITPAES-GITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNG 168 (378)
T ss_dssp HTTCCSS-EEEEEEETTEEEEEETTEEEEEECBCCTTSCCCCCCCS-SEEEEEEHHHHHHHHHHHGGGSCCCTTCTTTSE
T ss_pred HHhCCCC-cEEEEEeCCEEEEEECCEEEEEcccChHHCCCCCCCCC-ceEEEECHHHHHHHHhheEEEEECCCCcceeeE
Confidence 9999987 79999988899999999999999999999999987643 568999999999999999999999999999999
Q ss_pred EEEEEECCEEEEEEecceEEEEEEEecCCCCCCcceEEEehhhHHHHHhhhcCCCC-cEEEEEeCcEEEEEECcEEEEEe
Q psy13360 161 LLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKEN-PVELKISNNQIKIIFSNIEIISK 239 (1161)
Q Consensus 161 V~~~~~~~~L~lvATDg~RLa~~~i~~~~~~~~~~~viIP~k~L~eL~klL~~~~~-~V~i~~~~~~l~f~~~~~~~~~r 239 (1161)
|+|+++++.|+++||||||++....+++... ++++++|++.+.++.++|.+.++ +|.|.++++++.|.+++..+.+|
T Consensus 169 V~l~~~~~~l~~vAtDg~rla~~~~~~~~~~--~~~~iip~k~l~el~k~L~~~~~~~V~i~~~~~~i~f~~~~~~~~sr 246 (378)
T 1vpk_A 169 VFWELHKNLLRLVASDGFRLALAEEQIENEE--EASFLLSLKSMKEVQNVLDNTTEPTITVRYDGRRVSLSTNDVETVMR 246 (378)
T ss_dssp EEEEEETTEEEEEEECSSEEEEEEEECCCCS--CEEEEEEHHHHHHHHHHHHTCCCSEEEEEECSSEEEEECSSEEEEEE
T ss_pred EEEEEECCEEEEEEeCcccEEEEEEecCCCC--cceEEEEchHHHHHHHhhccCCCceEEEEEcCCEEEEEECCEEEEEE
Confidence 9999999999999999999999998876542 27999999999999999986445 79999999999999999999999
Q ss_pred ecCCCCCCccccccCCcceEEEEeHHHHHHHHHHhhccccCCcceEEEEEeCCEEEEEEEcCCccccceeeeeeeeCCcc
Q psy13360 240 LIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASEELEINYNGKDK 319 (1161)
Q Consensus 240 li~g~fPdy~~vip~~~~~~i~v~r~~L~~aL~Rv~~~s~~~~~~V~l~~~~~~L~isa~d~~~g~~~E~i~~~~~Ge~~ 319 (1161)
+++|+||||++++|.+++..++++|++|++||+|++++++++.+.|+|.++++.|++++.+++.|+++|+++++++|+++
T Consensus 247 Lidg~fPdy~~vip~~~~~~~~v~~~~l~~al~Rv~~~s~~~~~~v~l~~~~~~l~i~a~~~d~g~a~e~l~~~~~G~~~ 326 (378)
T 1vpk_A 247 VVDAEFPDYKRVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMRLVSKSPDYGEVVDEVEVQKEGEDL 326 (378)
T ss_dssp CCSSCCCCGGGGSCSCCSEEEEEEHHHHHHHHHHHHHHHTTTTCCEEEEECSSEEEEEEEETTTEEEEEEEECEEEECCE
T ss_pred eccccCCCHHHhcccCCCeEEEEEHHHHHHHHHHHHHHhcCCCceEEEEEeCCEEEEEEcCCccceeEEEEEEEecCCeE
Confidence 99999999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred ceeeechhhhh--hcccCcccccc
Q psy13360 320 NFIKFLIKIML--LKNKNSYDIQD 341 (1161)
Q Consensus 320 ~ii~fn~~yLl--L~~~~~d~i~l 341 (1161)
+ ++||++||+ |+++++++|.|
T Consensus 327 ~-i~fN~~yL~d~L~~~~~~~v~l 349 (378)
T 1vpk_A 327 V-IAFNPKFIEDVLKHIETEEIEM 349 (378)
T ss_dssp E-EEECHHHHHHHHHHCCSSEEEE
T ss_pred E-EEEcHHHHHHHHhcCCCCEEEE
Confidence 9 999999999 99999999888
No 24
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=100.00 E-value=9.7e-55 Score=462.26 Aligned_cols=199 Identities=37% Similarity=0.716 Sum_probs=168.9
Q ss_pred cccceeeccceEEeecCCCCccchhHHhHHHhhHhhhcCCCCCeEEEEEecCCcEEEEECCCccccccccCCCCCCCCcc
Q psy13360 357 GLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSA 436 (1161)
Q Consensus 357 ~~e~vrkRP~mYiGs~~~~~gl~hlv~EivdNsiDe~~~g~~~~I~V~i~~dgsisV~DnGrGIPv~~~~~~~~~~~~~~ 436 (1161)
|||||||||||||||++. ||+|+|+|+||+|++++|+|+.|.|+|+.||+|+|+|||+|||++.||+ +|+|+
T Consensus 1 gle~vr~rpgmyig~~~~----~~~v~Elv~NsiDa~~~g~a~~I~V~i~~~g~i~V~DnG~GIp~~~~~~----~~~~~ 72 (201)
T 3fv5_A 1 GLEPVRRRPGMYTDTTRP----NHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPE----EGVPA 72 (201)
T ss_dssp CCHHHHHCGGGTSCTTST----HHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCSBCTT----CSSBH
T ss_pred CchhhccCCccEECCCCh----hhhhHHHHHHHHHHHhcCCCcEEEEEEeCCCEEEEEECCCCcCcccccc----cCcch
Confidence 799999999999999874 9999999999999999999999999999999999999999999999998 89999
Q ss_pred eEEEEeeecccCCCCCCceeeecccccchhhHhhhhccEEEEEEEeCCEEEEEEEEcCccccccccccCCccccCcEEec
Q psy13360 437 AEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIG 516 (1161)
Q Consensus 437 ~e~v~t~l~ag~kfd~~~yk~sgGlhGvG~svvNalS~~~~V~v~r~g~~~~q~f~~G~~~~~~~~~~~~~~~~~~~~~g 516 (1161)
+|++|+++||||||+++.|++|||+||+|++++||||++|+|+++++|+.|+|+|++| .++.++..++
T Consensus 73 ~e~i~~~~hatsK~~~~~~~~s~GfrGeglssinalS~~l~v~t~~~g~~~~~~~~~G------------~~~~~~~~~g 140 (201)
T 3fv5_A 73 VELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENG------------EKVQDLQVVG 140 (201)
T ss_dssp HHHHHHCC---------------------CHHHHHTEEEEEEEEEETTEEEEEEEETT------------EEEEEEEEEE
T ss_pred hheeeeeeccccCcCCCcccccCcccceecchhhcccceEEEEEEecCceEEEEEeCC------------EEcccceecc
Confidence 9999999999999999999999999999999999999999999999999999999999 6666777677
Q ss_pred cC--CCCCcEEEEEeCccccccCCCCHHHHHHHHHhhhccCCCcEEEEeecccceEEEEEe
Q psy13360 517 DT--NKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEF 575 (1161)
Q Consensus 517 ~~--~~~GT~V~F~PD~~iF~~~~~~~~~l~~Rl~elA~lnpgl~i~l~d~r~~~~~~f~~ 575 (1161)
.+ .++||+|+|+||+++|++..++++.|.+|++++|++||||+|+|+|+|.++++.|||
T Consensus 141 ~~~~~~~GT~V~f~Pdr~~F~~~~~e~~~i~~~l~~lA~l~pgv~~~l~~~r~~~~~~~~y 201 (201)
T 3fv5_A 141 TCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY 201 (201)
T ss_dssp ECCTTCCEEEEEEEECGGGSSCCCCCHHHHHHHHHHHHHHSTTCEEEEEETTTTEEEEECC
T ss_pred cCCCCCCCeEEEEEECHHHcCCCccCHHHHHHHHHHHHHhCCCCEEEEEecCCCcEEEEEC
Confidence 65 679999999999999988899999999999999999999999999999988888987
No 25
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=100.00 E-value=6.1e-40 Score=398.54 Aligned_cols=301 Identities=19% Similarity=0.185 Sum_probs=240.3
Q ss_pred hhccccccceeeccceEEeecCCCCccchhHHhHHHhhHhhhc-CCCCCeEEEEEecCC----cEEEEECCCcccccccc
Q psy13360 352 IQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESL-AGYCTKINVTIYSDN----SISISDNGRGIPIDIKI 426 (1161)
Q Consensus 352 i~~L~~~e~vrkRP~mYiGs~~~~~gl~hlv~EivdNsiDe~~-~g~~~~I~V~i~~dg----sisV~DnGrGIPv~~~~ 426 (1161)
.+.++-.++++++|+||..+++. .+|+|+++|+|+||+|++. +|+|..|.|+++.++ +|+|.|||+|||.+.++
T Consensus 13 ~k~isi~~~~~~~~~~~~~~~D~-~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~ 91 (621)
T 2q2e_B 13 QKSISVAEFFEKNRQILGFDSAP-RSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIP 91 (621)
T ss_dssp CCCSCSHHHHHHSTTTSSCSSHH-HHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHH
T ss_pred hhcCceEEEecCCCceeEEecCH-HHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHH
Confidence 34455567899999999666665 7999999999999999998 688999999998876 69999999999999887
Q ss_pred CCCCCCCCcceEEEEeeecccCCCCCCceeeecccccchhhHhhhhccEE-----EEEEEeCC--EEEEEEE----EcCc
Q psy13360 427 DDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFL-----QLTINRNK--KIHYMEF----RYGV 495 (1161)
Q Consensus 427 ~~~~~~~~~~~e~v~t~l~ag~kfd~~~yk~sgGlhGvG~svvNalS~~~-----~V~v~r~g--~~~~q~f----~~G~ 495 (1161)
. +|+.+|+|+||.. ++.++|.||+|++++|++|+++ .|++.++| ..|.++| ++|
T Consensus 92 ~------------iF~~~~atskf~~--~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g- 156 (621)
T 2q2e_B 92 K------------VFAKLLYGSRFHA--LKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTN- 156 (621)
T ss_dssp H------------HHSCCCCC--CCC--CC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSC-
T ss_pred H------------HhhhhccCCcccc--ccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhcc-
Confidence 6 8999999999976 6789999999999999999996 99998877 6899998 666
Q ss_pred cccccccccCCccccC-cEEeccCCCCCcEEEEEeCccccccCCCCH---HHHHHHHHhhhccCCCcEEEEeecccceEE
Q psy13360 496 LQNRIIKTINGISVSP-IKIIGDTNKQGTKIHFWVDEKIFSNIEFHY---EILKKRIRELSFLNNGVCITLIDERIKKKE 571 (1161)
Q Consensus 496 ~~~~~~~~~~~~~~~~-~~~~g~~~~~GT~V~F~PD~~iF~~~~~~~---~~l~~Rl~elA~lnpgl~i~l~d~r~~~~~ 571 (1161)
.+... ....+....+||+|+|+ |. ..++. +.|.+|++++|++|||++|+|+|++. .
T Consensus 157 -----------~~~~~~~~~~~~~~~~GT~V~~~-----f~-~~~~~~~~~~I~~~L~~lAllnpgv~I~L~d~~~---~ 216 (621)
T 2q2e_B 157 -----------EPDILVDEVRDWFRPHGTQIELE-----MR-AAYVKGRRQSIYEYLKATAIVNPHARITLIDPDG---N 216 (621)
T ss_dssp -----------SCCCCCEEECCCSCSSCCCEEEE-----CS-CCCCCCSSSSSHHHHHHHHHHCCSCEEEECCTTS---C
T ss_pred -----------cccccccccccCCCCCCCEEEEE-----ec-CccchHHHHHHHHHHHHHHhhCCCCEEEEEECCc---e
Confidence 23221 12223345799999999 43 34444 78999999999999999999999974 5
Q ss_pred EEEeCCchhhhhhhhhcCCcccCCceEEEeeccccccCCceEEEEEEeecCCCcceeeeeecccccCCCCchhHHHHHHH
Q psy13360 572 IFEFKGGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGI 651 (1161)
Q Consensus 572 ~f~~~~Gi~~fv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~veva~~~~~~~~e~~~SFvN~I~T~~GGtHv~g~~~al 651 (1161)
.|+|++|+ .++++...+++|.++ |.. .+ .++++++|+++| ++.||||+|+|.+||
T Consensus 217 ~~~~~gg~----~~L~~~~~~i~p~~~---G~~-----~~-~~eval~~~~~~--~i~sFvN~i~T~~GG---------- 271 (621)
T 2q2e_B 217 EEVFERAT----DKMPEPAEEILPHPE---GIE-----LG-TLMKMLHYTERQ--KLAPFLRYSFCKIGL---------- 271 (621)
T ss_dssp CEEEECCC----CCCCCCCCCCCCCST---TCC-----HH-HHHHHHHHCC-------CTTSSSSCC--C----------
T ss_pred EEEeCCcc----cchhcccccccCCce---eec-----cC-eEEEEEeeCCCe--EEEEEeCCcccCCCH----------
Confidence 69999997 455655566665552 322 12 478899999998 489999999999999
Q ss_pred HHHHHHHHHHhccccc-ccccCChhhHhcceEEEEEEeecCCCcccccccccccccccchhHHHHHHHHHHHHh
Q psy13360 652 TRAINKYIEENEFLKK-SKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQ 724 (1161)
Q Consensus 652 t~~in~~~~~~~l~Kk-~~~~~~~~diregL~~vvsv~i~~P~FegQTK~kL~n~~v~~~v~~~v~~~l~~~l~ 724 (1161)
+++|+|+++.++.|+ .+.+++++|||+||++|+||+++||||+ .++++++..+.+.|..||.
T Consensus 272 -r~in~~~~~~~l~k~~~~~~lt~dDiregL~avisvki~~Pqtk----------~l~pige~~i~~~l~~~~~ 334 (621)
T 2q2e_B 272 -LTAEEICKAAGLDPEIDPHALGRHEARKLIEAFEKVKIMAPPTD----------CLSPIGEDLIYRGLEKETT 334 (621)
T ss_dssp -HHHHHHHHTTTCCTTSCSSSCCSSSSTTTTHHHHTSCCSCCCST----------TCCCCCHHHHHHHHHHHSC
T ss_pred -HHHHHHHHHhCccccccCCCCCHHHHHhhcEEEEEEECCCCCcc----------ccChhHHHHHHHHHHHhcC
Confidence 678899999888876 5578999999999999999999999754 7788999999999999984
No 26
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.89 E-value=3.4e-25 Score=266.27 Aligned_cols=285 Identities=15% Similarity=0.141 Sum_probs=202.2
Q ss_pred hhhccccccceeeccceEEeecCCCCccchhHHhHHHhhHhhhcCCC-CCeEEEEEecCC------cEEEEECCCccccc
Q psy13360 351 SIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGY-CTKINVTIYSDN------SISISDNGRGIPID 423 (1161)
Q Consensus 351 ~i~~L~~~e~vrkRP~mYiGs~~~~~gl~hlv~EivdNsiDe~~~g~-~~~I~V~i~~dg------sisV~DnGrGIPv~ 423 (1161)
.++.++..|.++++|+||+.+.+. ..|+++++|+|+||+|....|. ...|.|++..++ .|+|.|||+|||.+
T Consensus 6 ~~k~isi~eff~~~~~l~i~~~d~-~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e 84 (530)
T 2zbk_B 6 KFTSLSPAEFFKRNPELAGFPNPA-RALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQ 84 (530)
T ss_dssp --------CGGGTCCGGGTCSSHH-HHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGG
T ss_pred HhhhcChhheeecCCCceEEcCcH-HHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCcCceEEEEEEECCCCCCHH
Confidence 455666778999999999887765 5899999999999999886542 227889888755 79999999999988
Q ss_pred cccCCCCCCCCcceEEEEeeecccCCCCCCceeeecccccchhhHhhhhcc-----EEEEEEEeCCE--EEEEEEEcCcc
Q psy13360 424 IKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSR-----FLQLTINRNKK--IHYMEFRYGVL 496 (1161)
Q Consensus 424 ~~~~~~~~~~~~~~e~v~t~l~ag~kfd~~~yk~sgGlhGvG~svvNalS~-----~~~V~v~r~g~--~~~q~f~~G~~ 496 (1161)
..+. +|..+++++|+. ++.++|.+|+|+++++.+++ ++.|++..++. .+...+.-...
T Consensus 85 ~l~~------------iF~~f~~tsk~~---~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~ 149 (530)
T 2zbk_B 85 EVPN------------AFGRVLYSSKYV---NRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDIN 149 (530)
T ss_dssp GSHH------------HHTSCCCSCCCC---CSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETT
T ss_pred HHHH------------HhccccccCCcc---cccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEeccc
Confidence 7765 788888999983 44677899999999999998 79998887653 33333211000
Q ss_pred ccccccccCCccccCcEEec-cCCCCCcEEEEEeCccccccCCCCH-HHHHHHHHhhhccCCCcEEEEeecccceEEEEE
Q psy13360 497 QNRIIKTINGISVSPIKIIG-DTNKQGTKIHFWVDEKIFSNIEFHY-EILKKRIRELSFLNNGVCITLIDERIKKKEIFE 574 (1161)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~g-~~~~~GT~V~F~PD~~iF~~~~~~~-~~l~~Rl~elA~lnpgl~i~l~d~r~~~~~~f~ 574 (1161)
.+ +....+....+ ....+||+|+++ |....+.. ..+.++++.+|++||+++|.|.+... ..|+
T Consensus 150 ~~-------~g~~~~~~~~~~~~~~~GT~V~v~-----l~~~~~e~~~~i~~~l~~~Al~~p~v~~~l~~~~~---~~~~ 214 (530)
T 2zbk_B 150 KN-------EPIIVERGSVENTRGFHGTSVAIS-----IPGDWPKAKSRIYEYIKRTYIITPYAEFIFKDPEG---NVTY 214 (530)
T ss_dssp TT-------EEEEEEEEEEECCSSCCEEEEEEE-----EECCHHHHHHHHHHHHHHHHHHCTTCCEEEECTTS---CEEE
T ss_pred cc-------CCccccccccCCCCCCCCcEEEEE-----eccchhhHHHHHHHHHHHHHHHCCCcEEEEEECCC---eEEE
Confidence 00 01112222332 225689999998 44444455 78999999999999999999998642 3466
Q ss_pred eCCchhhhhhhhhcCCcccCCceEEEeeccccccCCceEEEEEEe-ecCCCcc-eeeeeecccccCCCCchhHHHHHHHH
Q psy13360 575 FKGGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQ-WNNSYNE-NILCFTNNILQVDGGTHLTGLRSGIT 652 (1161)
Q Consensus 575 ~~~Gi~~fv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~veva~~-~~~~~~e-~~~SFvN~I~T~~GGtHv~g~~~alt 652 (1161)
+++.. +.+...... ++. +..++.++.+++ |+.++.+ ++.+|+|++.|..||+|.++|++++
T Consensus 215 ~~~~~----~~lp~~~~~----~~~--------~~~Gi~~~~~l~~~~~~~~~~~l~~fl~~~ft~~g~~~a~~~~~~~- 277 (530)
T 2zbk_B 215 YPRLT----NKIPKPPQE----VKP--------HPYGVDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELA- 277 (530)
T ss_dssp ECCCC----CCCCCCCCC----CCC--------CGGGCCHHHHHHHHTTCSSCCBHHHHHHTTSTTCCHHHHHHHHHHT-
T ss_pred ecCcc----ccccCCcce----ecc--------CCCChhHHHHHHHHhccCCCceeHhhhcCccccccHHHHHHHHHhh-
Confidence 66532 111111010 111 114566777777 7777777 7999999999999999999998875
Q ss_pred HHHHHHHHHhccccccc-ccCChhhHhcceEEEEEEe-ecCCC
Q psy13360 653 RAINKYIEENEFLKKSK-IEIIGEDIREGLTCVLSIK-IPDPK 693 (1161)
Q Consensus 653 ~~in~~~~~~~l~Kk~~-~~~~~~diregL~~vvsv~-i~~P~ 693 (1161)
++.++.+ .+++++|++++|.++.+++ +++|.
T Consensus 278 ----------gl~~~~~~~~l~~~~~~~ll~a~~~~k~~~~P~ 310 (530)
T 2zbk_B 278 ----------GLKPNKKVKNLTEEEITRLVETFKKDEDFRSPS 310 (530)
T ss_dssp ----------TCCSSCBSSCCCHHHHHHHHHHHHHCCCCCCCC
T ss_pred ----------CCCCCCCcccCCHHHHHHHHHHHHhccCCCCCC
Confidence 5666553 5899999999999999998 77764
No 27
>3aiz_C DNA polymerase sliding clamp C; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_A*
Probab=99.89 E-value=3.4e-22 Score=219.79 Aligned_cols=191 Identities=13% Similarity=0.187 Sum_probs=169.7
Q ss_pred cHHHHHHHHHhhcccccccccccceeeEEEEEECCEEEEEEecceEEEEEEEecCCCCCCcceE---EEehhhHHHHHhh
Q psy13360 134 SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDI---IIPRKTVFTLQRL 210 (1161)
Q Consensus 134 ~~~~L~~aI~~v~~a~s~~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~~~~~~~~v---iIP~k~L~eL~kl 210 (1161)
++..|+++++.+ +|+++|++|+++++.|+++||||||++.+...++...-.++.+ ++|.+.+.+|.|+
T Consensus 7 ~~~~lk~~i~~~---------~~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~i~~~~~l~~l~ki 77 (246)
T 3aiz_C 7 DADAFSYIFRTL---------EEFIDEITLDFTSDGLKIRGIDPSRVTFIDILIPAGYFEEYNVEKEEKVGVKLEDFTDV 77 (246)
T ss_dssp CHHHHHHHHHHH---------TTTCSEEEEEECSSEEEEEEECTTSCEEEEEEEEGGGSSEEECSSCEEEEEEHHHHHHH
T ss_pred cHHHHHHHHHHH---------HHHhcEEEEEEcCCeEEEEEECCCcEEEEEEEEChHhCcEEEcCCCeEEEEEHHHHHHH
Confidence 788899999888 7899999999999999999999999999998876432123344 7899999999999
Q ss_pred hc--CCCCcEEEEEeC-cEEEEEECc---EEEEEeecCCCCCCccccccC-CcceEEEEeHHHHHHHHHHhhcc-ccCCc
Q psy13360 211 LE--NKENPVELKISN-NQIKIIFSN---IEIISKLIDGKFLDYKYVISN-KYEKSFLVNRNKLLRSLQRISII-SNDKL 282 (1161)
Q Consensus 211 L~--~~~~~V~i~~~~-~~l~f~~~~---~~~~~rli~g~fPdy~~vip~-~~~~~i~v~r~~L~~aL~Rv~~~-s~~~~ 282 (1161)
|. +.++.|+|.+++ +++.|.+++ ..+.+|+++|+||+|+ +|. +++..+.+++++|.++++|++.+ +++
T Consensus 78 L~~~~~~~~v~i~~~~~~~l~~~~~~~~~~~~~~rlidg~~p~~~--iP~~~~~~~i~i~~~~l~~a~~r~~~l~s~~-- 153 (246)
T 3aiz_C 78 LKTVTKNDSLYLETDENQNIKVTLDGVYERTFTFPSIVASEIETP--NLNLEFPFKAKALTVTFTDIIDEIEDIGGDS-- 153 (246)
T ss_dssp HTTCCTTCEEEEEECSSSCEEEEEESSSEEEEEECCCCCCCCCCS--CSCCCCSEEEEEEHHHHHHHHHHHHHHCCSE--
T ss_pred HhhCCCCCEEEEEECCCCeEEEEEecCcEEEEEEEcccCCcccCC--CCCCcccEEEEEEHHHHHHHHHHHhhCCCCE--
Confidence 96 335679999987 599999999 9999999999999999 786 89999999999999999999999 543
Q ss_pred ceEEEEEeCCEEEEEEEcCCccccceeee------eeeeCCccceeeechhhhh--hcccC-cccccc
Q psy13360 283 KGVRLVIKPNYLKITVSSSNREKASEELE------INYNGKDKNFIKFLIKIML--LKNKN-SYDIQD 341 (1161)
Q Consensus 283 ~~V~l~~~~~~L~isa~d~~~g~~~E~i~------~~~~Ge~~~ii~fn~~yLl--L~~~~-~d~i~l 341 (1161)
|.|.++++.+++++.+ +.|+++++++ +.++|++.+ ++||.+||+ |++++ +++|.+
T Consensus 154 --V~l~~~~~~l~ls~~~-d~g~~~~~l~~~~~~~~~~~ge~~~-i~Fn~~yL~d~lk~~~~s~~V~l 217 (246)
T 3aiz_C 154 --ITFKAEGGKLYLSANS-DMGSSTIELSTENGGLLESEGGDAE-SVYGLEYVVNTSKMRKPSDTVEI 217 (246)
T ss_dssp --EEEEEETTEEEEEEEC-SSCEEEEEECTTTTSCSEEEECCEE-EEEEHHHHHTTGGGTTTCSEEEE
T ss_pred --EEEEEECCEEEEEEEc-CCceEEEEEecCCCccEEEEEeeEE-EEEEHHHHHHHhhhccCCCeEEE
Confidence 9999999999999866 9999999998 899999999 999999998 99998 998888
No 28
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.87 E-value=9.8e-22 Score=224.00 Aligned_cols=287 Identities=18% Similarity=0.184 Sum_probs=185.3
Q ss_pred chhhccccccceeeccceEEeecCCCCccchhHHhHHHhhHhhhcCCCCCeEEEEEecCCc--EEEEECCCccccccccC
Q psy13360 350 SSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYSDNS--ISISDNGRGIPIDIKID 427 (1161)
Q Consensus 350 ~~i~~L~~~e~vrkRP~mYiGs~~~~~gl~hlv~EivdNsiDe~~~g~~~~I~V~i~~dgs--isV~DnGrGIPv~~~~~ 427 (1161)
..|+.|+.-..-+-++|++| ..+.++++|+|+||+|+. ++.|.|.++.+|. |+|.|||+|||.+..+.
T Consensus 7 ~~I~~L~~~~~~~Iaagevi------~~~~~vv~eLv~NAidA~----a~~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~ 76 (348)
T 3na3_A 7 GVIRRLDETVVNRIAAGEVI------QRPANAIKEMIENCLDAK----STSIQVIVKEGGLKLIQIQDNGTGIRKEDLDI 76 (348)
T ss_dssp CCCCCCCHHHHHHHHHHHHC------CSHHHHHHHHHHHHHHTT----CSEEEEEEEGGGTSEEEEEECSCCCCGGGGGT
T ss_pred cccccCCHHHHHhhcccCcc------cCHHHHHHHHHHHHHHcC----CCEEEEEEEeCCEEEEEEEECCcCcChHHhhh
Confidence 35889999989999999998 468999999999999984 7899999988764 99999999999987765
Q ss_pred CCCCCCCcceEEEEeeecccCCCCC---CceeeecccccchhhHhhhhccEEEEEEEeCCE--EEEEEEEcCcccccccc
Q psy13360 428 DKHKPKRSAAEIVMTELHAGGKFNK---NSYKISGGLHGIGLSCVNGLSRFLQLTINRNKK--IHYMEFRYGVLQNRIIK 502 (1161)
Q Consensus 428 ~~~~~~~~~~e~v~t~l~ag~kfd~---~~yk~sgGlhGvG~svvNalS~~~~V~v~r~g~--~~~q~f~~G~~~~~~~~ 502 (1161)
++..|+++|+++ .....|+|+||+|++++|++| +++|+++++|. .|++.|++|
T Consensus 77 -------------~~~~~~tsK~~~~~dl~~i~s~GfrGeaL~Si~avs-~l~v~sr~~~~~~~~~~~~~~G-------- 134 (348)
T 3na3_A 77 -------------VCERFTTSKLQSFEDLASISTYGFRGEALASISHVA-HVTITTKTADGKCAYRASYSDG-------- 134 (348)
T ss_dssp -------------TTSTTCCSSCCCC---------CCTTCHHHHHHHSS-EEEEEEECTTCSSEEEEEEETT--------
T ss_pred -------------hhccccccccCcchhhhccccCCcCChHHHHhhccc-EEEEEEEECCCCceEEEEEeCC--------
Confidence 346899999864 344689999999999999999 89999999884 799999998
Q ss_pred ccCCccccCcEEeccCCCCCcEEEE------EeCcccc-ccCCCCHHHHHHHHHhhhccCCCcEEEEeecccceEEEEEe
Q psy13360 503 TINGISVSPIKIIGDTNKQGTKIHF------WVDEKIF-SNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEF 575 (1161)
Q Consensus 503 ~~~~~~~~~~~~~g~~~~~GT~V~F------~PD~~iF-~~~~~~~~~l~~Rl~elA~lnpgl~i~l~d~r~~~~~~f~~ 575 (1161)
.+..+++.. ..++||+|+| +|++.+| +....+++.|.++++++|++|||++|+|.+..... ..|..
T Consensus 135 ----~~~~~~~~~--~~~~GTtV~v~~LF~n~P~R~k~lk~~~~e~~~i~~~l~~~Al~~p~v~f~l~~~g~~~-~~~~~ 207 (348)
T 3na3_A 135 ----KLKAPPKPC--AGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGETV-ADVRT 207 (348)
T ss_dssp ----EESSCCEEE--CCCSEEEEEEESTTTTCHHHHHTSCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETTCSS-CSEEC
T ss_pred ----EEeeeeeEe--cCCCCcEEEECcccccCchhhhhccccHHHHHHHHHHHHHHHhhCCCeEEEEEECCEEE-EEeec
Confidence 554444433 3578999999 6999888 55567788999999999999999999999864321 11322
Q ss_pred C--CchhhhhhhhhcCCcccCCceEEEeeccccccCCceEEEEEEeecC--CCcceeeeeecccccCCCCchhHHHHHHH
Q psy13360 576 K--GGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNN--SYNENILCFTNNILQVDGGTHLTGLRSGI 651 (1161)
Q Consensus 576 ~--~Gi~~fv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~veva~~~~~--~~~e~~~SFvN~I~T~~GGtHv~g~~~al 651 (1161)
. +.+.+=+..+-... .....+.++.+.. ..++.++.-+.-.+ .-...++-|||+-+-..- . |
T Consensus 208 ~~~~~~~~~i~~i~G~~--~~~~l~~v~~~~~---~~~~~i~G~is~p~~~~~~~~q~~fVNgR~v~~~-----~----l 273 (348)
T 3na3_A 208 LPNASTVDNIRSIFGNA--VSRELIEIGCEDK---TLAFKMNGYISNANYSVKKCIFLLFINHRLVEST-----S----L 273 (348)
T ss_dssp CTTCCHHHHHHHHHCHH--HHTTEEEEEEEEG---GGTEEEEEEEECSSCCBSSCEEEEEETTEECCCT-----T----H
T ss_pred CCCCCHHHHHHHHhChH--hHhhcEEEEeecC---CccEEEEEEEeCCccCCCcccEEEEECCeEecCH-----H----H
Confidence 2 12333222221110 1112233333220 01345544333211 112346899999775432 3 3
Q ss_pred HHHHHHHHHHhcccccccccCChhhHhcceEEEEEEeecCCCcc---cccccc
Q psy13360 652 TRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFN---SQTKNK 701 (1161)
Q Consensus 652 t~~in~~~~~~~l~Kk~~~~~~~~diregL~~vvsv~i~~P~Fe---gQTK~k 701 (1161)
.++|++..+ .++.+. ..=.+++++.+|.-..| ..||..
T Consensus 274 ~~ai~~~y~--~~l~~~----------~~P~~~L~l~~~p~~vDVNvhP~K~e 314 (348)
T 3na3_A 274 RKAIETVYA--AYLPKN----------THPFLYLSLEISPQNVDVNVHPTKHE 314 (348)
T ss_dssp HHHHHHHHH--TTSCTT----------CBCEEEEEEECC--------------
T ss_pred HHHHHHHHH--HhCcCC----------CceEEEEEEEeChhheeeeeCCCcCE
Confidence 444443222 123221 12378899998866666 445543
No 29
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A* 3p83_A*
Probab=99.87 E-value=9.5e-22 Score=216.10 Aligned_cols=193 Identities=13% Similarity=0.155 Sum_probs=167.0
Q ss_pred EcHHHHHHHHHhhcccccccccccceeeEEEEEECCEEEEEEecceEEEEEEEecCCCCCCcceE---EEehhhHHHHHh
Q psy13360 133 LSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDI---IIPRKTVFTLQR 209 (1161)
Q Consensus 133 i~~~~L~~aI~~v~~a~s~~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~~~~~~~~v---iIP~k~L~eL~k 209 (1161)
.++..|+++++. .+|+++|++|+++++.|+++||||||++.+...++...-.+..+ ++|.+.+.+|.|
T Consensus 6 ~~~~~~~~i~~~---------i~~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~i~~~~~l~el~k 76 (245)
T 1rwz_A 6 MTGELLKTVTRA---------IVALVSEARIHFLEKGLHSRAVDPANVAMVIVDIPKDSFEVYNIDEEKTIGVDMDRIFD 76 (245)
T ss_dssp EEHHHHHHHHHH---------HHTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHH
T ss_pred cchHHHHHHHHH---------HHHHhceEEEEEcCCeEEEEEECCCcEEEEEEEEChHhCceEEcCCCeEEEEEHHHHHH
Confidence 356666665544 46889999999999999999999999999998876532234455 889999999999
Q ss_pred hhc--CCCCcEEEEEeCc-EEEEEECc--EEEEEeecCCCCCCccccccC-CcceEEEEeHHHHHHHHHHhhccccCCcc
Q psy13360 210 LLE--NKENPVELKISNN-QIKIIFSN--IEIISKLIDGKFLDYKYVISN-KYEKSFLVNRNKLLRSLQRISIISNDKLK 283 (1161)
Q Consensus 210 lL~--~~~~~V~i~~~~~-~l~f~~~~--~~~~~rli~g~fPdy~~vip~-~~~~~i~v~r~~L~~aL~Rv~~~s~~~~~ 283 (1161)
+|. +.++.|.|.++++ ++.|.+++ ..+.+|+++|+||+|+ +|. +++..+.+++.+|+++++|++.++++
T Consensus 77 iL~~~~~~~~v~i~~~~~~~l~~~~~~~~~~~~~rlidg~~p~~~--iP~~~~~~~v~~~~~~l~~av~r~~~ls~~--- 151 (245)
T 1rwz_A 77 ISKSISTKDLVELIVEDESTLKVKFGSVEYKVALIDPSAIRKEPR--IPELELPAKIVMDAGEFKKAIAAADKISDQ--- 151 (245)
T ss_dssp HHTTSCTTSEEEEEESSSSEEEEEETTEEEEEECBCGGGSCCCCC--CCCCCCSEEEEEEHHHHHHHHHHHHTTCSE---
T ss_pred HHhhCCCCCEEEEEECCCCeEEEEEeeeEEEEEEEccccCccCCC--CCCCcccEEEEEEHHHHHHHHHHHHhcCCE---
Confidence 996 3356799999999 99999999 9999999999999998 786 89999999999999999999999744
Q ss_pred eEEEEEeCCEEEEEEEcCCccccce----eeeeeeeCCccceeeechhhhh--hcccC-ccccccc
Q psy13360 284 GVRLVIKPNYLKITVSSSNREKASE----ELEINYNGKDKNFIKFLIKIML--LKNKN-SYDIQDT 342 (1161)
Q Consensus 284 ~V~l~~~~~~L~isa~d~~~g~~~E----~i~~~~~Ge~~~ii~fn~~yLl--L~~~~-~d~i~l~ 342 (1161)
|.|.++++.+++++.+ +.|++++ ++.+.++|++.+ ++||.+||+ |++++ +++|.+.
T Consensus 152 -V~l~~~~~~l~ls~~~-d~g~~~~~~~~e~~~~~~g~~~~-i~Fn~~yL~d~lk~~~~s~~V~l~ 214 (245)
T 1rwz_A 152 -VIFRSDKEGFRIEAKG-DVDSIVFHMTETELIEFNGGEAR-SMFSVDYLKEFCKVAGSGDLLTIH 214 (245)
T ss_dssp -EEEEEETTEEEEEEEC-SSCEEEEEECGGGSSEECCCCEE-EEEEHHHHHHHGGGCCTTCEEEEE
T ss_pred -EEEEEECCEEEEEEEc-cCcEEEEecCCCccEEEEEeeEE-EEEeHHHHHHHhhhccCCCeEEEE
Confidence 9999999999999865 8898875 667889998888 999999998 99999 9998883
No 30
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.87 E-value=6.4e-22 Score=226.54 Aligned_cols=283 Identities=20% Similarity=0.248 Sum_probs=201.7
Q ss_pred hhhccccccceeeccceEEeecCCCCccchhHHhHHHhhHhhhcCCCCCeEEEEEecCC--cEEEEECCCccccccccCC
Q psy13360 351 SIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYSDN--SISISDNGRGIPIDIKIDD 428 (1161)
Q Consensus 351 ~i~~L~~~e~vrkRP~mYiGs~~~~~gl~hlv~EivdNsiDe~~~g~~~~I~V~i~~dg--sisV~DnGrGIPv~~~~~~ 428 (1161)
.|+.|+.-..-+-++|..| ..++++++|+|+||+|.. ++.|.|.++.+| +|+|.|||.|||.+..+.
T Consensus 4 ~I~~L~~~~~~~I~agevi------~~~~~~v~ELi~NaidA~----a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~- 72 (333)
T 1b63_A 4 PIQVLPPQLANQIAAGEVV------ERPASVVKELVENSLDAG----ATRIDIDIERGGAKLIRIRDNGCGIKKDELAL- 72 (333)
T ss_dssp CCCCCCHHHHHHHHHHHHC------SSHHHHHHHHHHHHHHTT----CSEEEEEEEGGGTSEEEEEECSCCCCGGGHHH-
T ss_pred cceECCHHHHHHHhcCCch------hCHHHHHHHHHHHHHHCC----CCeEEEEEEeCCceEEEEEEcCCCcCHHHHHH-
Confidence 4777777777777888887 468999999999999953 689999999876 799999999999987765
Q ss_pred CCCCCCcceEEEEeeecccCCCCC--Ccee-eecccccchhhHhhhhccEEEEEEEeCCE--EEEEEEEcCccccccccc
Q psy13360 429 KHKPKRSAAEIVMTELHAGGKFNK--NSYK-ISGGLHGIGLSCVNGLSRFLQLTINRNKK--IHYMEFRYGVLQNRIIKT 503 (1161)
Q Consensus 429 ~~~~~~~~~e~v~t~l~ag~kfd~--~~yk-~sgGlhGvG~svvNalS~~~~V~v~r~g~--~~~q~f~~G~~~~~~~~~ 503 (1161)
+|+ .|+++|+.+ +.+. .+.|+||+|+++++++| +++|+++++|. .|.+ |.+|
T Consensus 73 -----------~~~-~~~tsK~~~~~d~~~~~~~G~~G~gl~si~~vs-~l~v~s~~~~~~~~~~~-~~~g--------- 129 (333)
T 1b63_A 73 -----------ALA-RHATSKIASLDDLEAIISLGFRGEALASISSVS-RLTLTSRTAEQQEAWQA-YAEG--------- 129 (333)
T ss_dssp -----------HHS-TTCCSSCCSHHHHHTCCSSCCSSCHHHHHHTTS-EEEEEEECTTCSSEEEE-EEET---------
T ss_pred -----------hhh-cccccCccccchhhhccccCccccchhhhhcCC-cEEEEEecCCCceEEEE-EEcC---------
Confidence 443 577889864 2233 58899999999999999 79999998773 3554 6677
Q ss_pred cCCccccCcEEeccCCCCCcEEEEE------eCcccc-ccCCCCHHHHHHHHHhhhccCCCcEEEEeecccceEEEEEeC
Q psy13360 504 INGISVSPIKIIGDTNKQGTKIHFW------VDEKIF-SNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFK 576 (1161)
Q Consensus 504 ~~~~~~~~~~~~g~~~~~GT~V~F~------PD~~iF-~~~~~~~~~l~~Rl~elA~lnpgl~i~l~d~r~~~~~~f~~~ 576 (1161)
... .........++||+|+|+ |++..| +....+++.|.++++.+|+++|+++|+|.+.. + ..|+++
T Consensus 130 ---~~~-~~~~~~~~~~~GT~V~v~~Lf~n~P~r~kflk~~~~e~~~i~~~~~~~al~~p~v~~~l~~ng--~-~~~~~~ 202 (333)
T 1b63_A 130 ---RDM-NVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIALARFDVTINLSHNG--K-IVRQYR 202 (333)
T ss_dssp ---TTT-EEEEEEECCCSEEEEEEESTTTTCHHHHHTCCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETT--E-EEEEEC
T ss_pred ---Ccc-eEeeecccCCCCCEEEEecccccchhhhhhhccHHHHHHHHHHHHHHHhccCCCcEEEEEECC--E-EEEecC
Confidence 220 111222345799999999 998888 44456778999999999999999999998753 2 345655
Q ss_pred C-----chhhhhhhhhcCCcccCCceEEEeeccccccCCceEEEEEEeecC---CC-cceeeeeecccccCCCCchhHHH
Q psy13360 577 G-----GTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNN---SY-NENILCFTNNILQVDGGTHLTGL 647 (1161)
Q Consensus 577 ~-----Gi~~fv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~veva~~~~~---~~-~e~~~SFvN~I~T~~GGtHv~g~ 647 (1161)
+ ++.+++..+... . .....+.+..+. +++.++..+++.+ ++ ...++.|||+.+..+ .
T Consensus 203 ~~~~~~~~~~~i~~i~G~-~-~~~~li~i~~~~-----~~~~v~G~i~~p~~~~~~~~~~~~~fvNgR~V~~-----~-- 268 (333)
T 1b63_A 203 AVPEGGQKERRLGAICGT-A-FLEQALAIEWQH-----GDLTLRGWVADPNHTTPALAEIQYCYVNGRMMRD-----R-- 268 (333)
T ss_dssp CCCTTCCTHHHHHHHHCH-H-HHHHEEEEEEEE-----TTEEEEEEEECGGGCCTTGGGCEEEEETTEECCC-----H--
T ss_pred CCCCCchHHHHHHHHhCh-h-hHhheEEEEecC-----CCEEEEEEEEcCccccCCCCCcEEEEECCEEecC-----H--
Confidence 4 677777776532 1 123456666655 6788998888876 44 567899999999864 3
Q ss_pred HHHHHHHHHHHHHHhcccccccccCChhhHhcceEEEEEEeecCCCcc---ccccccc
Q psy13360 648 RSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFN---SQTKNKL 702 (1161)
Q Consensus 648 ~~alt~~in~~~~~~~l~Kk~~~~~~~~diregL~~vvsv~i~~P~Fe---gQTK~kL 702 (1161)
.|.++|++..+. ++.+. ..=.+++++.+|.-..| ..||...
T Consensus 269 --~l~~ai~~~y~~--~l~~~----------~~P~~~l~l~~~p~~vDvNvhP~K~ev 312 (333)
T 1b63_A 269 --LINHAIRQACED--KLGAD----------QQPAFVLYLEIDPHQVDVNVHPAKHEV 312 (333)
T ss_dssp --HHHHHHHHHHHH--HSSSC----------CCCCEEEEEECCGGGEECTTSTTCCCC
T ss_pred --HHHHHHHHHHHh--hccCC----------CCcEEEEEEEeCchhccceECCCcCEE
Confidence 344444432222 12211 12267888888755555 4556543
No 31
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2
Probab=99.86 E-value=2e-21 Score=213.56 Aligned_cols=191 Identities=10% Similarity=0.139 Sum_probs=163.2
Q ss_pred cHHHHHHHHHhhcccccccccccceeeEEEEEECCEEEEEEecceEEEEEEEecCCCCCCcceE---EEehhhHHHHHhh
Q psy13360 134 SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDI---IIPRKTVFTLQRL 210 (1161)
Q Consensus 134 ~~~~L~~aI~~v~~a~s~~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~~~~~~~~v---iIP~k~L~eL~kl 210 (1161)
++..|+++++. .+|+++|++|+++++.|+++||||||++.+...++...-.+..+ ++|.+.+.+|.|+
T Consensus 7 ~~~~~k~i~~~---------i~~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~i~~~~~l~~l~ki 77 (245)
T 1ud9_A 7 DVRDLKAIIQA---------LLKLVDEALFDIKPEGIQLVAIDKAHISLIKIELPKEMFKEYDVPEEFKFGFNTQYMSKL 77 (245)
T ss_dssp CHHHHHHHHHH---------HHHHCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEECSSCEEEEEEHHHHHHH
T ss_pred chHHHHHHHHH---------HHHHhceEEEEEcCCeEEEEEECCCcEEEEEEEEChHhCeEEEcCCCeEEEEEHHHHHHH
Confidence 45556555544 46889999999999999999999999999998876432123344 7899999999999
Q ss_pred hc--CCCCcEEEEEeCc--EEEEEECc--EEEEEeecCCCCCCccccccC-CcceEEEEeHHHHHHHHHHhhccccCCcc
Q psy13360 211 LE--NKENPVELKISNN--QIKIIFSN--IEIISKLIDGKFLDYKYVISN-KYEKSFLVNRNKLLRSLQRISIISNDKLK 283 (1161)
Q Consensus 211 L~--~~~~~V~i~~~~~--~l~f~~~~--~~~~~rli~g~fPdy~~vip~-~~~~~i~v~r~~L~~aL~Rv~~~s~~~~~ 283 (1161)
|. +.++.|.|.++++ ++.|.+++ ..+.+|+++|+||+|+ +|. +++..+.+++++|.++++|++.++++
T Consensus 78 L~~~~~~~~v~i~~~~~~~~l~~~~~~~~~~~~~rlidg~~p~~~--ip~~~~~~~i~i~~~~l~~a~~r~~~~s~~--- 152 (245)
T 1ud9_A 78 LKAAKRKEEIIIDADSPEVVKLTLSGALNRVFNVNNIEVLPPEVP--EVNLEFDIKATINASGLKNAIGEIAEVADT--- 152 (245)
T ss_dssp HTTCCSCCCEEEEEEETTEEEEEECSSSCEEEEEECCCCCCCCCC-----CCCSEEEEEEHHHHHHHHHHHHHHCSE---
T ss_pred HhcCCCCCEEEEEEcCCCCEEEEEECCEEEEEEEECcccCcccCC--CCCCCccEEEEEeHHHHHHHHHHHHhcCCE---
Confidence 96 3356799999988 99999999 9999999999999998 786 89999999999999999999999744
Q ss_pred eEEEEEeCCEEEEEEEcCCccccceeee------eeee-CCccceeeechhhhh--hcccC-ccccccc
Q psy13360 284 GVRLVIKPNYLKITVSSSNREKASEELE------INYN-GKDKNFIKFLIKIML--LKNKN-SYDIQDT 342 (1161)
Q Consensus 284 ~V~l~~~~~~L~isa~d~~~g~~~E~i~------~~~~-Ge~~~ii~fn~~yLl--L~~~~-~d~i~l~ 342 (1161)
|.|.++++.+++++.+ +.|+ +++++ ++++ |++.+ ++||.+||+ |++++ +++|.+.
T Consensus 153 -V~l~~~~~~l~ls~~~-d~g~-~~~l~~~~~~~~~~~~ge~~~-i~Fn~~yL~d~lk~~~~s~~V~l~ 217 (245)
T 1ud9_A 153 -LLISGNEEKVVVKGEG-ENKV-EVEFSKDTGSLADIEFNKESS-SAYDVEYLNDIISLTKLSDYVKVA 217 (245)
T ss_dssp -EEEEECSSEEEEEESS-SSCC-CEEEEGGGTCEEEEEESSCEE-EEEEHHHHHHTGGGGGGCSEEEEE
T ss_pred -EEEEEECCEEEEEEEc-cCce-EEEEecCCCccEEEEeCCcee-EEEEHHHHHHHhhhcccCCEEEEE
Confidence 9999999999999755 9999 99998 8999 99999 999999998 99998 9988883
No 32
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotr binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C*
Probab=99.86 E-value=2.3e-21 Score=212.94 Aligned_cols=190 Identities=14% Similarity=0.205 Sum_probs=165.0
Q ss_pred cHHHHHHHHHhhcccccccccccceeeEEEEEECCEEEEEEecceEEEEEEEecCCCCCCcceE---EEehhhHHHHHhh
Q psy13360 134 SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDI---IIPRKTVFTLQRL 210 (1161)
Q Consensus 134 ~~~~L~~aI~~v~~a~s~~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~~~~~~~~v---iIP~k~L~eL~kl 210 (1161)
++..|+++++. .+|+++|++|+++++.|+++||||||++.+...++...-.++.+ ++|.+.+.+|.|+
T Consensus 7 ~a~~~~~i~~~---------i~~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~i~~~~~l~~l~ki 77 (244)
T 2ijx_A 7 DVRVLKDIIQA---------LARLVDEAVLKFKQDSVELVALDRAHISLISVNLPREMFKEYDVNDEFKFGFNTQYLMKI 77 (244)
T ss_dssp CHHHHHHHHHH---------HHHHCSEEEEEECSSEEEEEEECTTSSEEEEEEEEGGGCSEEECSSCEEEEEEHHHHHHH
T ss_pred chHHHHHHHHH---------HHHHhceEEEEEecCeEEEEEECCCcEEEEEEEECHHhCceEEcCCCEEEEEEHHHHHHH
Confidence 45556555544 46889999999999999999999999999998876432123344 7899999999999
Q ss_pred hc--CCCCcEEEEEeC--cEEEEEECc--EEEEEeecCCCCCCccccccC-CcceEEEEeHHHHHHHHHHhhccccCCcc
Q psy13360 211 LE--NKENPVELKISN--NQIKIIFSN--IEIISKLIDGKFLDYKYVISN-KYEKSFLVNRNKLLRSLQRISIISNDKLK 283 (1161)
Q Consensus 211 L~--~~~~~V~i~~~~--~~l~f~~~~--~~~~~rli~g~fPdy~~vip~-~~~~~i~v~r~~L~~aL~Rv~~~s~~~~~ 283 (1161)
|. +.++.|.|.+++ +++.|.+++ ..+.+|+++|+||+|+ +|. +++..+.+++++|.++++|++.++++
T Consensus 78 L~~~~~~~~v~i~~~~~~~~l~~~~~~~~~~~~~rlidg~~p~~~--iP~~~~~~~i~i~~~~l~~a~~r~~~~s~~--- 152 (244)
T 2ijx_A 78 LKVAKRKEAIEIASESPDSVIINIIGSTNREFNVRNLEVSEQEIP--EINLQFDISATISSDGFKSAISEVSTVTDN--- 152 (244)
T ss_dssp HTTCCSSCEEEEEEEETTEEEEEEESSSEEEEEEECCCCCCCCCC--CCCCCCSEEEEEEHHHHHHHHHHHTTTCSE---
T ss_pred HhhCCCCCEEEEEecCCCCEEEEEECCEEEEEEEECCccCcccCC--CCCCcccEEEEEEHHHHHHHHHHHHhcCCE---
Confidence 96 335679999998 899999999 9999999999999998 886 89999999999999999999999744
Q ss_pred eEEEEEeCCEEEEEEEcCCccccceeee------eeee-CCccceeeechhhhh--hcccC-cccccc
Q psy13360 284 GVRLVIKPNYLKITVSSSNREKASEELE------INYN-GKDKNFIKFLIKIML--LKNKN-SYDIQD 341 (1161)
Q Consensus 284 ~V~l~~~~~~L~isa~d~~~g~~~E~i~------~~~~-Ge~~~ii~fn~~yLl--L~~~~-~d~i~l 341 (1161)
|.|.++++.+++++.+ +.|+ +++++ ++++ |++.+ ++||.+||+ |++++ +++|.+
T Consensus 153 -V~l~~~~~~l~ls~~~-d~g~-~~~l~~~~~~~~~~~~ge~~~-i~Fn~~yL~d~lk~~~~s~~V~l 216 (244)
T 2ijx_A 153 -VVVEGHEDRILIKAEG-ESEV-EVEFSKDTGGLQDLEFSKESK-NSYSAEYLDDVLSLTKLSDYVKI 216 (244)
T ss_dssp -EEEEEETTEEEEEETT-CTTS-EEEEETTTTCEEEEEESSCEE-EEEEHHHHHHTGGGGGGCSEEEE
T ss_pred -EEEEEECCEEEEEEEe-cCce-EEEEeCCCCccEEEEcCCceE-EEEEHHHHHHHhhhccCCCEEEE
Confidence 9999999999999754 9999 99998 8999 99999 999999998 99998 998888
No 33
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.86 E-value=4.8e-21 Score=220.26 Aligned_cols=176 Identities=21% Similarity=0.273 Sum_probs=137.1
Q ss_pred hhhccccccceeeccceEEeecCCCCccchhHHhHHHhhHhhhcCCCCCeEEEEEecCC--cEEEEECCCccccccccCC
Q psy13360 351 SIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYSDN--SISISDNGRGIPIDIKIDD 428 (1161)
Q Consensus 351 ~i~~L~~~e~vrkRP~mYiGs~~~~~gl~hlv~EivdNsiDe~~~g~~~~I~V~i~~dg--sisV~DnGrGIPv~~~~~~ 428 (1161)
.|+.|+.--.-+-++|++| ..++|+|+|+|+||+|+. ++.|.|++..+| +|+|.|||+|||.+.++.
T Consensus 5 ~I~~L~~~~~~~I~agevi------~~~~~vv~eLv~NaiDA~----a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~- 73 (367)
T 3h4l_A 5 QIHQINDIDVHRITSGQVI------TDLTTAVKELVDNSIDAN----ANQIEIIFKDYGLESIECSDNGDGIDPSNYEF- 73 (367)
T ss_dssp --------CTHHHHHHHHC------CSHHHHHHHHHHHHHHTT----CSEEEEEEETTTTSEEEEEECSCCCCGGGTTT-
T ss_pred cceeCCHHHHHHhcCCCcc------cCHHHHHHHHHHHHHHCC----CCEEEEEEEeCCEEEEEEEECCCCcChhHhcc-
Confidence 5888888888888999998 468999999999999953 789999998776 799999999999998765
Q ss_pred CCCCCCcceEEEEeeecccCCCC---CCceeeecccccchhhHhhhhccEEEEEEEeCC-EEEEEEEE-cCccccccccc
Q psy13360 429 KHKPKRSAAEIVMTELHAGGKFN---KNSYKISGGLHGIGLSCVNGLSRFLQLTINRNK-KIHYMEFR-YGVLQNRIIKT 503 (1161)
Q Consensus 429 ~~~~~~~~~e~v~t~l~ag~kfd---~~~yk~sgGlhGvG~svvNalS~~~~V~v~r~g-~~~~q~f~-~G~~~~~~~~~ 503 (1161)
++..|+++|+. |.....|+|+||+|++++|++| +++|+++++| ..|++.|. +|
T Consensus 74 ------------~~~~~~tsK~~~~~Dl~~i~t~GfrGeaL~Si~avS-~l~V~sr~~~~~~~~~~~~~~G--------- 131 (367)
T 3h4l_A 74 ------------LALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGIA-KLSVITTTSPPKADKLEYDMVG--------- 131 (367)
T ss_dssp ------------TTCCEEC---------CCCCEEEETTHHHHHHHHSS-EEEEEEESSTTCEEEEEECTTC---------
T ss_pred ------------ceeccccCcCCchhhhhhhhccCccchHHHHhhccC-EEEEEEEECCCCEEEEEEcCCC---------
Confidence 24578888874 3445679999999999999999 6999999887 77999997 56
Q ss_pred cCCccccCcEEeccCCCCCcEEEE------EeCccc-c-ccCCCCHHHHHHHHHhhhccCCCcEEEEeec
Q psy13360 504 INGISVSPIKIIGDTNKQGTKIHF------WVDEKI-F-SNIEFHYEILKKRIRELSFLNNGVCITLIDE 565 (1161)
Q Consensus 504 ~~~~~~~~~~~~g~~~~~GT~V~F------~PD~~i-F-~~~~~~~~~l~~Rl~elA~lnpgl~i~l~d~ 565 (1161)
.+..+ .+...++||+|+| +|++.+ | +....+++.|.++++++|+++||++|+|.+.
T Consensus 132 ---~~~~~---~~~~~~~GTtV~v~~LF~n~P~R~k~flk~~~~e~~~i~~~l~~~Al~~p~v~~~l~~~ 195 (367)
T 3h4l_A 132 ---HITSK---TTTSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYAIINAAIKFSVWNI 195 (367)
T ss_dssp ---CEEEE---EEECCSSEEEEEEESTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred ---cEEee---ccccCCCCeEEEEchhhccCchhhhhhccchHHHHHHHHHHHHHHHhhCCCeEEEEEEc
Confidence 33322 2234679999999 699888 8 4556778899999999999999999999874
No 34
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A 3lx1_A*
Probab=99.86 E-value=3.7e-21 Score=211.90 Aligned_cols=191 Identities=11% Similarity=0.215 Sum_probs=158.6
Q ss_pred cHHHHHHHHHhhcccccccccccceeeEEEEEECCEEEEEEecceEEEEEEEecCCCCCCcceE---EEehhhHHHHHhh
Q psy13360 134 SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDI---IIPRKTVFTLQRL 210 (1161)
Q Consensus 134 ~~~~L~~aI~~v~~a~s~~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~~~~~~~~v---iIP~k~L~eL~kl 210 (1161)
++..|+++++. .+|+++|++|+++++.|+++||||||++.+...++...-.++.+ +.|...+.+|.++
T Consensus 9 ~~~~~~~i~~~---------i~~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~~~~~~~l~~l~ki 79 (249)
T 1iz5_A 9 GAKEFAQLIDT---------ASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNLDHLKKI 79 (249)
T ss_dssp CHHHHHHHHHH---------HTSSCSEEEEEECSSEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHH
T ss_pred chHHHHHHHHH---------HHHHhcEEEEEEeCCeEEEEEECCCcEEEEEEEECHHhCcEEEcCCCeEEEEEHHHHHHH
Confidence 56666666554 46889999999999999999999999999998876432122222 5566677777777
Q ss_pred hc--CCCCcEEEEEeCc-EEEEEECc---EEEEEeecCCCCCCccccccC-CcceEEEEeHHHHHHHHHHhhccccCCcc
Q psy13360 211 LE--NKENPVELKISNN-QIKIIFSN---IEIISKLIDGKFLDYKYVISN-KYEKSFLVNRNKLLRSLQRISIISNDKLK 283 (1161)
Q Consensus 211 L~--~~~~~V~i~~~~~-~l~f~~~~---~~~~~rli~g~fPdy~~vip~-~~~~~i~v~r~~L~~aL~Rv~~~s~~~~~ 283 (1161)
|. +.++.|+|.++++ ++.|.+++ ..+.+|+++|+||+|+ +|. +++..+.+++++|+++++|++.++++
T Consensus 80 l~~~~~~~~v~i~~~~~~~l~f~~~~~~~~~~~~rlidg~~p~~~--iP~~~~~~~v~i~~~~l~~a~~r~~~ls~~--- 154 (249)
T 1iz5_A 80 LKRGKAKDTLILKKGEENFLEITIQGTATRTFRVPLIDVEEMEVD--LPELPFTAKVVVLGEVLKAAVKAASLVSDS--- 154 (249)
T ss_dssp HTTCCTTCEEEEEECSSSEEEEEEESSSEEEEEEECBCCCC-------CCCCCCEEEEEEHHHHHHHHHHHTTTCSE---
T ss_pred HHhCCCCCEEEEEECCCCeEEEEEecCCEEEEEEEcccCCccCCC--CCCCcceEEEEEEHHHHHHHHHHHHhcCCE---
Confidence 75 3356799999999 99999999 9999999999999997 786 89999999999999999999999744
Q ss_pred eEEEEEeCCEEEEEEEcCCccccceeee------eeee-CCccceeeechhhhh--hcccC-cccccc
Q psy13360 284 GVRLVIKPNYLKITVSSSNREKASEELE------INYN-GKDKNFIKFLIKIML--LKNKN-SYDIQD 341 (1161)
Q Consensus 284 ~V~l~~~~~~L~isa~d~~~g~~~E~i~------~~~~-Ge~~~ii~fn~~yLl--L~~~~-~d~i~l 341 (1161)
|.|.++++.+++++.+ +.|+++++++ +.++ |++.+ ++||.+||+ |++++ +++|.+
T Consensus 155 -V~l~~~~~~l~ls~~~-d~g~~~~~l~~~~~~~~~~~~ge~~~-i~Fn~~yL~d~lk~~~~s~~V~l 219 (249)
T 1iz5_A 155 -IKFIARENEFIMKAEG-ETQEVEIKLTLEDEGLLDIEVQEETK-SAYGVSYLSDMVKGLGKADEVTI 219 (249)
T ss_dssp -EEEEEETTEEEEEEEC-SSCEEEEEEETTTTSSSEEEESSCEE-EEEEHHHHHHHHTTSCTTCEEEE
T ss_pred -EEEEEECCEEEEEEEe-cCceEEEEEccCCCccEEEEcCCceE-EEEeHHHHHHHhhhccCCCeEEE
Confidence 9999999999999866 9999999998 8999 99999 999999998 99998 998888
No 35
>3aiz_A DNA polymerase sliding clamp B; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_B*
Probab=99.85 E-value=7.5e-21 Score=209.29 Aligned_cols=191 Identities=13% Similarity=0.211 Sum_probs=161.9
Q ss_pred cHHHHHHHHHhhcccccccccccceeeEEEEEECCEEEEEEecceEEEEEEEecCCCCCCcceE---EEehhhHHHHHhh
Q psy13360 134 SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDI---IIPRKTVFTLQRL 210 (1161)
Q Consensus 134 ~~~~L~~aI~~v~~a~s~~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~~~~~~~~v---iIP~k~L~eL~kl 210 (1161)
++..|++++ +..+|+++|++|++++++|+++||||||++.+...++...-.+..+ +.|...+.+|.++
T Consensus 8 ~~~~~k~i~---------~~i~~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~i~~~~~l~~l~ki 78 (248)
T 3aiz_A 8 SAKDFYSLL---------SGLLKVTDEIILNFTEDSIFSRYLTDDKVLMVIFKIPKEYLEDYTIDKPLGIKININDLKKI 78 (248)
T ss_dssp CHHHHHHHH---------TTCTTCCSEEEEEECSSEEEEEEECTTSSEEEEEEEEGGGCEEEECSSCEEEEEEHHHHHHH
T ss_pred chHHHHHHH---------HHHHHHHheEEEEEccCcEEEEEECCCCEEEEEEEECHHhCceEEcCCCeEEEEEHHHHHHH
Confidence 455555554 3456899999999999999999999999999998876432122233 5566667777777
Q ss_pred hcC-CCCcEEEEEeC--cEEEEEECc------EEEEEeecCCCCCCccccccC-CcceEEEEeHHHHHHHHHHhhccccC
Q psy13360 211 LEN-KENPVELKISN--NQIKIIFSN------IEIISKLIDGKFLDYKYVISN-KYEKSFLVNRNKLLRSLQRISIISND 280 (1161)
Q Consensus 211 L~~-~~~~V~i~~~~--~~l~f~~~~------~~~~~rli~g~fPdy~~vip~-~~~~~i~v~r~~L~~aL~Rv~~~s~~ 280 (1161)
|.. .++.|.|.+++ +++.|.+++ ..+.+|+++|+||+|+ +|. +++..+.+++.+|.++++|++.++++
T Consensus 79 l~~~~~~~v~i~~~~~~~~l~~~~~~~~~~~~~~~~~rlidg~~p~~~--iP~~~~~~~v~~~~~~l~~av~r~~~~s~~ 156 (248)
T 3aiz_A 79 LGKAKSKSATVTLEETEAGLKVTVRDEKTGTRSNIYIKGEKTSIDQLT--EPKVNLSVTFTTDGDVLKDIARDLSLVGEE 156 (248)
T ss_dssp HHTCSSTTCEEEEEECSSEEEEEEEETTTTEEEEEEEECEEECCCCCC--CCCCCCSEEEEECHHHHHHHHHHHTTSCSE
T ss_pred HhhcCCCEEEEEEeCCCCeEEEEEEeCCCCEEEEEEEEccccCcccCC--CCCCCccEEEEEeHHHHHHHHHHHHhcCCE
Confidence 764 25668898887 899999988 9999999999999999 886 89999999999999999999999744
Q ss_pred CcceEEEEEeCCEEEEEEEcCCccccceeee-----eeee-CCccceeeechhhhh--hcccC-cccccc
Q psy13360 281 KLKGVRLVIKPNYLKITVSSSNREKASEELE-----INYN-GKDKNFIKFLIKIML--LKNKN-SYDIQD 341 (1161)
Q Consensus 281 ~~~~V~l~~~~~~L~isa~d~~~g~~~E~i~-----~~~~-Ge~~~ii~fn~~yLl--L~~~~-~d~i~l 341 (1161)
|.|.++++.+++++.+ +.|+++++++ +.++ |++.+ ++||.+||+ |++++ +++|.+
T Consensus 157 ----V~i~~~~~~l~ls~~~-d~g~~~~~~~~~~~~~~~~~ge~~~-i~fn~~yL~d~lk~~~~s~~V~l 220 (248)
T 3aiz_A 157 ----VEISADENTVTLSTEE-AGRTYKSLLKQDKPLKSLNVESPSK-AVYSIEVLKDVFKVTSISQNVTV 220 (248)
T ss_dssp ----EEEEECSSEEEEEEEE-TTEEEEEEEEETBEESEEEESSCEE-EEEEHHHHHHHHHHGGGCSSEEE
T ss_pred ----EEEEEeCCEEEEEEEc-cCceEEEEEcCCCcceEEecCCceE-EEEEHHHHHHHhhhccCCCeEEE
Confidence 9999999999999975 8999999998 8999 99999 999999998 99998 998888
No 36
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomic center for structural genomics, JCSG, protein structure INI PSI, transferase; HET: DNA; 2.00A {Thermotoga maritima} SCOP: d.131.1.1 d.131.1.1 d.131.1.1
Probab=99.83 E-value=1.4e-19 Score=211.21 Aligned_cols=204 Identities=16% Similarity=0.213 Sum_probs=170.8
Q ss_pred eEEEEcHHHHHHHHHhhcccccccccccceeeEEEEEECCEEEEEEecceEEEEEEEecCCCCCCcceEEEehhhHHHHH
Q psy13360 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQ 208 (1161)
Q Consensus 129 ~~~~i~~~~L~~aI~~v~~a~s~~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~~~~~~~~viIP~k~L~eL~ 208 (1161)
.+|.|+.+.|.++|++|.+++++++++|+|+||+|+++++.|+++|||++|++...++++.. .++++++||+|.+.++.
T Consensus 13 ~~~~i~~~~L~~~l~~v~~av~~~~t~piL~gvll~~~~~~L~l~aTD~~~~~~~~i~~~~~-~~~g~i~vpak~l~ei~ 91 (378)
T 1vpk_A 13 MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAAEI-SGEARFVVPGDVIQKMV 91 (378)
T ss_dssp EEEEEEHHHHHHHHHHHGGGCCCSSSCGGGGEEEEEEETTEEEEEEECSSEEEEEECCCSEE-EECEEEEEEC-CHHHHH
T ss_pred EEEEEEHHHHHHHHHHHHhhcCCCCChhHhCCEEEEEECCEEEEEEEcCceEEEEEEEEEEc-cCceEEEEEhHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999876531 23579999999999999
Q ss_pred hhhcCCCCcEEEEEeCcEEEEEECcEEEEEeecC-CCCCCccccccCCcceEEEEeHHHHHHHHHHhhccccCCc-----
Q psy13360 209 RLLENKENPVELKISNNQIKIIFSNIEIISKLID-GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKL----- 282 (1161)
Q Consensus 209 klL~~~~~~V~i~~~~~~l~f~~~~~~~~~rli~-g~fPdy~~vip~~~~~~i~v~r~~L~~aL~Rv~~~s~~~~----- 282 (1161)
|.|++ ++|++..+++++.|++++..|.+++++ ++||++..+ +....+++++.+|.++|+|++++++++.
T Consensus 92 r~Lp~--~~V~i~~~~~~l~i~~g~~~f~l~~l~~~~fP~~~~~---~~~~~~~i~~~~L~~~I~r~~~a~s~~e~r~~l 166 (378)
T 1vpk_A 92 KVLPD--EITELSLEGDALVISSGSTVFRITTMPADEFPEITPA---ESGITFEVDTSLLEEMVEKVIFAAAKDEFMRNL 166 (378)
T ss_dssp TTCCS--SEEEEEEETTEEEEEETTEEEEEECBCCTTSCCCCCC---CSSEEEEEEHHHHHHHHHHHGGGSCCCTTCTTT
T ss_pred HhCCC--CcEEEEEeCCEEEEEECCEEEEEcccChHHCCCCCCC---CCceEEEECHHHHHHHHhheEEEEECCCCccee
Confidence 99985 469999999999999999999999865 789988764 4567899999999999999999986543
Q ss_pred ceEEEEEeCCEEEEEEEcCCccccceeeeeeeeCCccceeeechhhhh--hcccCc--c-cccc
Q psy13360 283 KGVRLVIKPNYLKITVSSSNREKASEELEINYNGKDKNFIKFLIKIML--LKNKNS--Y-DIQD 341 (1161)
Q Consensus 283 ~~V~l~~~~~~L~isa~d~~~g~~~E~i~~~~~Ge~~~ii~fn~~yLl--L~~~~~--d-~i~l 341 (1161)
++|.|+++++.|+++|+|+... +..++++...++ .. +.++.+|+. ++.+++ + .|.+
T Consensus 167 ~GV~l~~~~~~l~~vAtDg~rl-a~~~~~~~~~~~-~~-~iip~k~l~el~k~L~~~~~~~V~i 227 (378)
T 1vpk_A 167 NGVFWELHKNLLRLVASDGFRL-ALAEEQIENEEE-AS-FLLSLKSMKEVQNVLDNTTEPTITV 227 (378)
T ss_dssp SEEEEEEETTEEEEEEECSSEE-EEEEEECCCCSC-EE-EEEEHHHHHHHHHHHHTCCCSEEEE
T ss_pred eEEEEEEECCEEEEEEeCcccE-EEEEEecCCCCc-ce-EEEEchHHHHHHHhhccCCCceEEE
Confidence 7899999999999999997643 444445544455 55 778888876 444432 3 5666
No 37
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae}
Probab=99.83 E-value=4.6e-19 Score=224.12 Aligned_cols=305 Identities=15% Similarity=0.247 Sum_probs=243.5
Q ss_pred EEEccHHHHHHHHHHhhccccCCCchhhhccEEEEEECCeEEEEEe----cceeEEEEEeeecc--------cCCceEEE
Q psy13360 4 VVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLST----DTEVQITTYTAVGY--------GNSSINII 71 (1161)
Q Consensus 4 ~v~i~k~~L~~aL~~v~~~v~~k~~~piL~~Iliea~~~~L~ltat----D~e~~i~~~i~a~~--------~~~~G~v~ 71 (1161)
+|.++++.|.++|+.+.+ ++. +|.|.+.+++++++|. +.++.+...++.+. ..++++++
T Consensus 409 k~~i~~~~f~~al~~v~~-vsd--------~Iki~~~~~~l~l~asgd~g~~~i~i~~~i~~~~~~~~~~~~v~e~~~~~ 479 (798)
T 3k4x_A 409 TLSLPSSEFSKIVRDLSQ-LSD--------SINIMITKETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLT 479 (798)
T ss_dssp EEEEEHHHHHHHHHHHHT-TCS--------EEEEEEETTEEEEEEECSSCEEEEEECCBCCSSSGGGCBEEEESSCEEEE
T ss_pred EEEEEHHHHHHHHHHHHH-hCC--------eEEEEEeCCEEEEEEEecCCceEEEEeeccccCCCcceEEEEcCCceEEE
Confidence 467889999999999999 443 7999999999999999 55555554344321 24679999
Q ss_pred EechhHHHHHhcCCCCccEEEEEe-CcEEEEEECcEEEEEccCCCCCCCCccCCCCcceEEEE-----------c-HHHH
Q psy13360 72 VAARKFIDILRSLPETEKVTIYIE-NKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTL-----------S-QKTL 138 (1161)
Q Consensus 72 V~ak~l~~Ivk~Lp~~~~I~ie~~-~~~l~I~sG~~~~~l~~~~~edfP~~~~~~~~~~~~~i-----------~-~~~L 138 (1161)
.+++.|.+++|.+|..+.|+++.. +..+.|+ |.+++ ....||..|...+ ...+.+ + +..|
T Consensus 480 f~~~YL~di~K~l~~s~~V~i~~~~~~Pl~i~-----f~i~g-g~~~y~laPri~~-~~~~~~~~~~~mfea~l~~~~~l 552 (798)
T 3k4x_A 480 FGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQ-----FDLKS-GFLQFFLAPKFND-EGSNSQASNSGALEAKFEEASLF 552 (798)
T ss_dssp EEHHHHHHHGGGGGTCSEEEEEECSSSCEEEE-----EEETT-EEEEEEECCCCC--------------CEEEESSHHHH
T ss_pred EEHHHHHHHHhhcCCCCEEEEEECCCCCEEEE-----EEEcC-cEEEEEEcCCCCC-ccceeeccccceEEEEcCchHHH
Confidence 999999999999994447999985 5567776 88887 6788999987754 566777 7 8888
Q ss_pred HHHHHhhcccccccccccceeeEEEEEECCEEEEEEecceEEEEEEEecCCCCCCcc----eEEEehhhHHHHHhhh--c
Q psy13360 139 KCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCS----DIIIPRKTVFTLQRLL--E 212 (1161)
Q Consensus 139 ~~aI~~v~~a~s~~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~~~~~~~----~viIP~k~L~eL~klL--~ 212 (1161)
+++|+. .+|++++++|++++++|.++|+|.+|++.+.+.++...-+++ +++| ...|.+|.++| .
T Consensus 553 k~ii~a---------i~~iv~~~~~~~~~~Gi~~~a~D~s~valv~~~L~~~~F~~y~cd~~i~i-G~nL~~L~kiLk~~ 622 (798)
T 3k4x_A 553 KRIIDG---------FKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTL-GMDLTSLSKILRCG 622 (798)
T ss_dssp HHHHHT---------TTTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGEEEEECSSCEEE-EEEHHHHHHHHHHS
T ss_pred HHHHHH---------HHHHhCcEEEEEECCeEEEEEECCCcEEEEEEEeccccCceEEcCCCeEE-EEEHHHHHHHHhcc
Confidence 888882 779999999999999999999999999999988875421122 4556 77777777777 3
Q ss_pred CCCCcEEEEEeCcE--EEEEECcE------EEEEeecCCCCCCcccccc-CCcceEEEEeHHHHHHHHHHhhccccCCcc
Q psy13360 213 NKENPVELKISNNQ--IKIIFSNI------EIISKLIDGKFLDYKYVIS-NKYEKSFLVNRNKLLRSLQRISIISNDKLK 283 (1161)
Q Consensus 213 ~~~~~V~i~~~~~~--l~f~~~~~------~~~~rli~g~fPdy~~vip-~~~~~~i~v~r~~L~~aL~Rv~~~s~~~~~ 283 (1161)
++++.|+|..++++ +.|.+++. .|.+||++++||+ ..+| .++...+.++..+|.++++|++.+++
T Consensus 623 ~~~d~v~l~~~d~~~~l~~~~e~~~~~~~~~f~lkL~d~~~~~--~~iP~~e~~~~i~m~s~~f~~~~~~l~~~sd---- 696 (798)
T 3k4x_A 623 NNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADF--LKIEELQYDSTLSLPSSEFSKIVRDLSQLSD---- 696 (798)
T ss_dssp CSSSEEEEECCSSCSEEEEEEECSSCCCEEEEEEECCCCCCCC--CCCCCCCCSEEEEEEHHHHHHHHHHHHTTCS----
T ss_pred CCCCEEEEEEcCCCCeEEEEEecCCCceEEEEEEEeecCCCCC--CCCCCccceEEEEEEHHHHHHHHHHHHhcCC----
Confidence 44678999998776 88888765 8999999999997 5678 58899999999999999999999973
Q ss_pred eEEEEEeCCEEEEEEEcCCccccceeee-----------eeee-CCccceeeechhhhh--hcccC-ccccccc
Q psy13360 284 GVRLVIKPNYLKITVSSSNREKASEELE-----------INYN-GKDKNFIKFLIKIML--LKNKN-SYDIQDT 342 (1161)
Q Consensus 284 ~V~l~~~~~~L~isa~d~~~g~~~E~i~-----------~~~~-Ge~~~ii~fn~~yLl--L~~~~-~d~i~l~ 342 (1161)
.|.+.++++.+.+++.+ +.|.+.+.+. +.++ |++.+ +.|+.+||. ++++. ++.|.+.
T Consensus 697 ~v~i~~~~~~v~~s~~g-d~G~~~~~l~~~~~~~~~~~~~~i~~~e~~~-~~f~l~YL~~~~Ka~~ls~~V~i~ 768 (798)
T 3k4x_A 697 SINIMITKETIKFVADG-DIGSGSVIIKPFVDMEHPETSIKLEMDQPVD-LTFGAKYLLDIIKGSSLSDRVGIR 768 (798)
T ss_dssp EEEEEEETTEEEEEEEC-SSCEEEEEECCBCCSSCGGGCBEEEESSCEE-EEEEHHHHHHHGGGGGTCSEEEEE
T ss_pred EEEEEEeCCEEEEEEEc-ccceEEEEecCCCCCCCccccEEEEcCCceE-EEEEHHHHHHHhhhccCCCeEEEE
Confidence 59999999999999887 8898887774 2444 88888 999999998 88887 8888773
No 38
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A
Probab=99.79 E-value=1.4e-18 Score=194.35 Aligned_cols=190 Identities=14% Similarity=0.179 Sum_probs=163.2
Q ss_pred cHHHHHHHHHhhcccccccccccceeeEEEEEECCEEEEEEecceEEEEEEEecCCCCCCc------ceEEEehhhHHHH
Q psy13360 134 SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSC------SDIIIPRKTVFTL 207 (1161)
Q Consensus 134 ~~~~L~~aI~~v~~a~s~~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~~~~~~------~~viIP~k~L~eL 207 (1161)
++..|+++++. .+|+++|++|++++++|+++|||+||++.+.+.++...-.+ ..+.+|.+.+.++
T Consensus 28 ~~~~lk~ii~~---------~~~il~~v~~~~~~~gl~~vAtD~~rla~~~~~l~~~~f~~y~~~~~i~~~i~l~~l~ki 98 (276)
T 2zvv_A 28 QGSLLKKVLES---------IKDLVNDANFDCSSTGFSLQAMDSSHVALVSLLLRSEGFEHYRCDRNLSMGMNLGNMSKM 98 (276)
T ss_dssp CTHHHHHHHHH---------HTTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHH
T ss_pred ChHHHHHHHHH---------HHHHhceEEEEEECCeEEEEEECCCCEEEEEEEEChhhCcEEEcCCCEEEEEEHHHHHHH
Confidence 78888888888 56899999999999999999999999999998876432122 3566777777777
Q ss_pred HhhhcCCCCcEEEEEe--CcEEEEEECc------EEEEEeecCCCCCCccccccC-CcceEEEEeHHHHHHHHHHhhccc
Q psy13360 208 QRLLENKENPVELKIS--NNQIKIIFSN------IEIISKLIDGKFLDYKYVISN-KYEKSFLVNRNKLLRSLQRISIIS 278 (1161)
Q Consensus 208 ~klL~~~~~~V~i~~~--~~~l~f~~~~------~~~~~rli~g~fPdy~~vip~-~~~~~i~v~r~~L~~aL~Rv~~~s 278 (1161)
++.+.+ ++.|+|.++ ++++.|.+++ ..+.+|+++|+||+|. +|. +++..+.+++++|.++++|++.++
T Consensus 99 lk~~~~-~d~v~i~~~~~~~~l~~~~~~~~~~~~~~~~~rLid~~~p~~~--iP~~~~~~~i~~~~~~l~~av~r~~~~s 175 (276)
T 2zvv_A 99 LKCAGN-DDIITIKADDGGDTVTFMFESPTQDKIADFEMKLMDIDSEHLG--IPDAEYHSIVRMPSNEFSRICKDLSSIG 175 (276)
T ss_dssp HHTSCT-TCEEEEEECTTCSEEEEEEECTTSSCEEEEEEECCCEECCCCC--CCCCCCSEEEEEEHHHHHHHHHHHHTTC
T ss_pred HhhCCC-CCeEEEEEcCCCCeEEEEEEeCCCceEEEEEEEcccCCcccCC--CCCCcccEEEEEEHHHHHHHHHHHHhhC
Confidence 766543 567999998 6889999988 8999999999999995 886 899999999999999999999997
Q ss_pred cCCcceEEEEEeCCEEEEEEEcCCccccceeee-----------eeee-CCccceeeechhhhh--hcccC-cccccc
Q psy13360 279 NDKLKGVRLVIKPNYLKITVSSSNREKASEELE-----------INYN-GKDKNFIKFLIKIML--LKNKN-SYDIQD 341 (1161)
Q Consensus 279 ~~~~~~V~l~~~~~~L~isa~d~~~g~~~E~i~-----------~~~~-Ge~~~ii~fn~~yLl--L~~~~-~d~i~l 341 (1161)
+ .|.|.++++.+++++.+ +.|++.++++ +.++ |++.+ ++||.+||+ |++++ +++|.+
T Consensus 176 d----~V~i~~~~~~l~lsa~g-d~g~~~~~l~~~~~~~~~~~~~~~~~ge~~~-i~fn~~YL~d~lka~~ls~~V~i 247 (276)
T 2zvv_A 176 D----TVVISVTKEGVKFSTAG-DIGTANIVLRQNTTVDKPEDAIVIEMKEPVS-LSFALRYMNSFTKATPLSDTVTI 247 (276)
T ss_dssp S----EEEEEEETTEEEEEEEE-TTEEEEEEECCCSSCCSGGGCCEEEESSCEE-EEEEHHHHHHHGGGGGGCSEEEE
T ss_pred C----EEEEEEeCCEEEEEEEe-eccEEEEEEccCCCCCCccccEEEecCCcEE-EEEEHHHHHHHhccccCCCEEEE
Confidence 4 39999999999999974 8999999987 6788 89999 999999998 99998 888888
No 39
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.78 E-value=6.7e-19 Score=203.29 Aligned_cols=289 Identities=16% Similarity=0.185 Sum_probs=170.4
Q ss_pred chhhccccccceeeccceEEeecCCCCccchhHHhHHHhhHhhhcCCCCCeEEEEEecCC--cEEEEECCCccccccccC
Q psy13360 350 SSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYSDN--SISISDNGRGIPIDIKID 427 (1161)
Q Consensus 350 ~~i~~L~~~e~vrkRP~mYiGs~~~~~gl~hlv~EivdNsiDe~~~g~~~~I~V~i~~dg--sisV~DnGrGIPv~~~~~ 427 (1161)
..|+.|+....-+-++|++| ..++++++|+|+||+|.. ++.|.|.+..+| .|+|.|||+|||.+..+.
T Consensus 13 ~~I~~L~~~~~~~i~agevi------~~~~~vl~eLv~NAiDA~----a~~I~I~i~~~~~~~I~V~DnG~Gi~~~~l~~ 82 (365)
T 1h7s_A 13 KAIKPIDRKSVHQICSGQVV------LSLSTAVKELVENSLDAG----ATNIDLKLKDYGVDLIEVSDNGCGVEEENFEG 82 (365)
T ss_dssp ----------------CEEE------CCHHHHHHHHHHHHHHTT----CSEEEEEEEGGGTSEEEEEECSCCCCGGGSGG
T ss_pred hhhccCCHHHHHHhcCCCch------hhHHHHHHHHHHHHHHCC----CCEEEEEEEeCCcEEEEEEECCCCcCHHHHHH
Confidence 36999999999999999998 568999999999999953 678999998765 799999999999987765
Q ss_pred CCCCCCCcceEEEEeeecccCCCCC--Ccee-eecccccchhhHhhhhccEEEEEEEeCCE--EEEEEEE-cCccccccc
Q psy13360 428 DKHKPKRSAAEIVMTELHAGGKFNK--NSYK-ISGGLHGIGLSCVNGLSRFLQLTINRNKK--IHYMEFR-YGVLQNRII 501 (1161)
Q Consensus 428 ~~~~~~~~~~e~v~t~l~ag~kfd~--~~yk-~sgGlhGvG~svvNalS~~~~V~v~r~g~--~~~q~f~-~G~~~~~~~ 501 (1161)
+|. .|+++|+.+ +.|+ .++|+||+|+++++++| +++|+++++|. .|++.|. +|
T Consensus 83 ------------~f~-~~~tsK~~~~~dl~~i~s~G~rG~gl~si~~vs-~v~v~t~~~~~~~~~~~~~~~~G------- 141 (365)
T 1h7s_A 83 ------------LTL-KHHTSKIQEFADLTQVETFGFRGEALSSLCALS-DVTISTCHASAKVGTRLMFDHNG------- 141 (365)
T ss_dssp ------------GGC-----------CCTTCSEEESSSSSHHHHHHHHS-EEEEEEECTTCSSCEEEEECTTS-------
T ss_pred ------------Hhh-hccccccccccchhcccccCCCCchhhhhhhhc-cEEEEEccCCCcceEEEEEcCCC-------
Confidence 333 467778753 3455 58999999999999999 99999998876 6999997 56
Q ss_pred cccCCccccCcEEeccCCCCCcEEEEE----eCccc---c-ccCCCCHHHHHHHHHhhhccCCCcEEEEeeccc--ceEE
Q psy13360 502 KTINGISVSPIKIIGDTNKQGTKIHFW----VDEKI---F-SNIEFHYEILKKRIRELSFLNNGVCITLIDERI--KKKE 571 (1161)
Q Consensus 502 ~~~~~~~~~~~~~~g~~~~~GT~V~F~----PD~~i---F-~~~~~~~~~l~~Rl~elA~lnpgl~i~l~d~r~--~~~~ 571 (1161)
.... .......+||+|+|+ +.|.+ | +....+++.+.++++++|+++||++|.|.+... ....
T Consensus 142 -----~~~~---~~~~~~~~GT~V~v~~LF~n~P~R~k~flk~~~~e~~~i~~~v~~~al~~p~v~f~l~~~~~~~~~~~ 213 (365)
T 1h7s_A 142 -----KIIQ---KTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQP 213 (365)
T ss_dssp -----CEEE---EEECCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTSCEEE
T ss_pred -----ceEe---ecccCCCCCcEEEEeecccccchhhhhhccchHHHHHHHHHhhhhhhhcCCceEEEEEecCCCCcEEE
Confidence 3221 122345789999997 22221 3 233446788999999999999999999998762 2245
Q ss_pred EEEeCC--chhhhhhhhhcCCcccCCceEEEeeccc-------------cccCCceEEEEEEeecC-----CCcceeeee
Q psy13360 572 IFEFKG--GTSGFVSYINKSKLVVHPTIFQAIGNKI-------------SEKKNNINIDVSMQWNN-----SYNENILCF 631 (1161)
Q Consensus 572 ~f~~~~--Gi~~fv~~l~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~veva~~~~~-----~~~e~~~SF 631 (1161)
.|+.++ ++.+.+..+-..... ...+.+..+.. +....++.+..-+.-.+ +-...++-|
T Consensus 214 ~~~~~~~~~~~~~i~~i~G~~~~--~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~i~~p~~~~~r~~~~~q~~f 291 (365)
T 1h7s_A 214 VVCTGGSPSIKENIGSVFGQKQL--QSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFF 291 (365)
T ss_dssp EEECCCCSSHHHHHHHHHCHHHH--HTEEECCCCCCCHHHHHHHTCCTTTTTSCCCEEEEEEECCSTTTSBSSSTTEEEE
T ss_pred EEEcCCCchHHHHHHHhcChHhH--hceEEEeccCCcccccccccccccccccccEEEEEEEeCcccccccCCCcceEEE
Confidence 677664 677766655321100 01122211100 00002344554333211 112347899
Q ss_pred ecccccCCCCchhHHHHHHHHHHHHHHHHHhcccccccccCChhhHhcceEEEEEEeecCCCcc---cccccc
Q psy13360 632 TNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFN---SQTKNK 701 (1161)
Q Consensus 632 vN~I~T~~GGtHv~g~~~alt~~in~~~~~~~l~Kk~~~~~~~~diregL~~vvsv~i~~P~Fe---gQTK~k 701 (1161)
||+-+-.. ..|.++|++..+. ++.+ ..=.+++++.+|.-..| ..||..
T Consensus 292 vNgR~v~~---------~~l~~ai~~~y~~--~~~~-----------~~P~~~L~l~~~p~~vDvNVhP~K~e 342 (365)
T 1h7s_A 292 INRRPCDP---------AKVCRLVNEVYHM--YNRH-----------QYPFVVLNISVDSECVDINVTPDKRQ 342 (365)
T ss_dssp ETTEEECC---------HHHHHHHHHHHHT--TCTT-----------CBCCEEEEEECCGGGEEEC------C
T ss_pred ECCeEecC---------HHHHHHHHHHHHh--hCcc-----------CCcEEEEEEEeChHHcceEECCCcCE
Confidence 99977542 2455555543332 2211 34478899998765655 455554
No 40
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity; 2.30A {Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2 PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3v60_B 3v61_B 3v62_B* 3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3pge_B 3l0x_B
Probab=99.76 E-value=9.6e-18 Score=185.55 Aligned_cols=190 Identities=16% Similarity=0.236 Sum_probs=155.9
Q ss_pred cHHHHHHHHHhhcccccccccccceeeEEEEEECCEEEEEEecceEEEEEEEecCCCCCCc------ceEEEehhhHHHH
Q psy13360 134 SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSC------SDIIIPRKTVFTL 207 (1161)
Q Consensus 134 ~~~~L~~aI~~v~~a~s~~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~~~~~~------~~viIP~k~L~eL 207 (1161)
++..|+++++.+ +|+++|++|++++++|+++|||+||++.+.+.++...-.+ ..+.+|.+.+..+
T Consensus 8 ~~~~~~~i~~~i---------~~i~~~v~~~~~~~gl~~~a~D~~rla~~~~~l~~~~F~~y~~~~~~~~~i~l~~l~ki 78 (258)
T 1plq_A 8 EASLFKRIIDGF---------KDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKI 78 (258)
T ss_dssp SHHHHHHHHHHH---------TTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEECCSSCEEEEEEHHHHHHH
T ss_pred chHHHHHHHHHH---------HHHhceEEEEEcCCceEEEEECCCcEEEEEEEECHHhCcEEEeCCCeEEEEEHHHHHHH
Confidence 556666555444 6889999999999999999999999999988876432112 2345555555544
Q ss_pred HhhhcCCCCcEEEEEeC--cEEEEEECc------EEEEEeecCCCCCCccccccC-CcceEEEEeHHHHHHHHHHhhccc
Q psy13360 208 QRLLENKENPVELKISN--NQIKIIFSN------IEIISKLIDGKFLDYKYVISN-KYEKSFLVNRNKLLRSLQRISIIS 278 (1161)
Q Consensus 208 ~klL~~~~~~V~i~~~~--~~l~f~~~~------~~~~~rli~g~fPdy~~vip~-~~~~~i~v~r~~L~~aL~Rv~~~s 278 (1161)
++...+ ++.|+|.+++ +++.|.+++ ..+.+|+++++||+| .+|. +++..+.+++.+|.++++|++.++
T Consensus 79 l~~~~~-~d~v~i~~~~~~~~l~~~~~~~~~~~~~~~~~rlie~~~~~~--~ip~~~~~~~i~~~~~~l~~av~r~~~~s 155 (258)
T 1plq_A 79 LRCGNN-TDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFL--KIEELQYDSTLSLPSSEFSKIVRDLSQLS 155 (258)
T ss_dssp TTCSTT-TSEEEEEECSSCSEEEEEEECSSSSCEEEEEEECBCCCCCCC--CCCCSCCSEEEEEEHHHHHHHHHHHHTTC
T ss_pred HhcCCC-CCEEEEEecCCCCeEEEEEEcCCCCeEEEEEEEcccCCcccC--CCCCCCccEEEEEeHHHHHHHHHHHHhcC
Confidence 444432 5679999987 799999988 899999999999999 3675 899999999999999999999996
Q ss_pred cCCcceEEEEEeCCEEEEEEEcCCccccceeee-----------eeee-CCccceeeechhhhh--hcccC-cccccc
Q psy13360 279 NDKLKGVRLVIKPNYLKITVSSSNREKASEELE-----------INYN-GKDKNFIKFLIKIML--LKNKN-SYDIQD 341 (1161)
Q Consensus 279 ~~~~~~V~l~~~~~~L~isa~d~~~g~~~E~i~-----------~~~~-Ge~~~ii~fn~~yLl--L~~~~-~d~i~l 341 (1161)
+ .|.|.++++.+++++.+ +.|.+.++++ +.++ |++.+ ++||.+||+ |++++ ++.|.+
T Consensus 156 ~----~v~i~~~~~~l~ls~~~-d~g~~~~~l~~~~~~~~~~~~~~~~~ge~~~-i~f~~~yL~~~lka~~~s~~V~i 227 (258)
T 1plq_A 156 D----SINIMITKETIKFVADG-DIGSGSVIIKPFVDMEHPETSIKLEMDQPVD-LTFGAKYLLDIIKGSSLSDRVGI 227 (258)
T ss_dssp S----EEEEEEETTEEEEEEEC-SSCEEEEEECCBCCTTCGGGCBEEEESSCEE-EEEEHHHHHHHGGGGGTCSEEEE
T ss_pred C----EEEEEEECCEEEEEEEc-cCceEEEEEecCCCCCCCccceEEecCCcEE-EEEEHHHHHHHhccccCCceEEE
Confidence 3 39999999999999966 9999999987 6788 99999 999999998 99998 888888
No 41
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=99.75 E-value=2e-17 Score=181.60 Aligned_cols=192 Identities=14% Similarity=0.140 Sum_probs=160.1
Q ss_pred cHHHHHHHHHhhcccccccccccceeeEEEEEECCEEEEEEecceEEEEEEEecCCCCCCcc----eEEEehhhHHHHHh
Q psy13360 134 SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCS----DIIIPRKTVFTLQR 209 (1161)
Q Consensus 134 ~~~~L~~aI~~v~~a~s~~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~~~~~~~----~viIP~k~L~eL~k 209 (1161)
++..|+++++.+. .+++|++|++++++|+++|||+||++.+.+.++...-+++ ++.||...+.+|.+
T Consensus 8 ~a~~~k~i~~ai~---------~i~~~~~~~~~~~gl~~~A~D~~rval~~~~l~~~~F~~y~~~~~~~i~gi~l~~l~k 78 (245)
T 3fds_D 8 DAVSFSYILRTVG---------DFLSEANFIVTKEGIRVSGIDPSRVVFLDIFLPSSYFEGFEVSQEKEIIGFKLEDVND 78 (245)
T ss_dssp CHHHHHHHHHHHH---------TTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGEEEEEESSSCEEEEEEHHHHHH
T ss_pred cHHHHHHHHHHHH---------HHhceEEEEEcCCeEEEEEECCCCEEEEEEEEChHhCEEEEeCCccEEEEEEHHHHHH
Confidence 5666777666653 4789999999999999999999999999988764321111 34557778888888
Q ss_pred hhc--CCCCcEEEEEeCcEEEEEECcE---EEEEeecCCCCCCcccccc-CCcceEEEEeHHHHHHHHHHhhccccCCcc
Q psy13360 210 LLE--NKENPVELKISNNQIKIIFSNI---EIISKLIDGKFLDYKYVIS-NKYEKSFLVNRNKLLRSLQRISIISNDKLK 283 (1161)
Q Consensus 210 lL~--~~~~~V~i~~~~~~l~f~~~~~---~~~~rli~g~fPdy~~vip-~~~~~~i~v~r~~L~~aL~Rv~~~s~~~~~ 283 (1161)
+|. +.++.|++.++++++.|.+++. .|.+|+++++||+|+ +| .+++..+.+++.+|.++++|++.+++
T Consensus 79 iL~~~~~~d~v~i~~~~~~l~~~~~~~~~~~~~~rLid~~~~~~~--iP~~~~~~~v~~~s~~f~~~i~~~~~~s~---- 152 (245)
T 3fds_D 79 ILKRVLKDDTLILSSNESKLTLTFDGEFTRSFELPLIQVESTQPP--SVNLEFPFKAQLLTITFADIIDELSDLGE---- 152 (245)
T ss_dssp HHTTCCTTCEEEEEECSSEEEEEEESSSEEEEEEECCCCCCCCC------CCCSEEEEEEHHHHHHHHHHHTTTCS----
T ss_pred HHHhcCCCCEEEEEEeCCEEEEEEecCceEEEEEEeecCCcccCC--CCCcceEEEEEEEHHHHHHHHHHHHhcCC----
Confidence 885 2356799999999999999987 899999999999998 77 48999999999999999999999974
Q ss_pred eEEEEEeCCEEEEEEEcCCccccceeee------eeeeCCccceeeechhhhh--hcccC-ccccccc
Q psy13360 284 GVRLVIKPNYLKITVSSSNREKASEELE------INYNGKDKNFIKFLIKIML--LKNKN-SYDIQDT 342 (1161)
Q Consensus 284 ~V~l~~~~~~L~isa~d~~~g~~~E~i~------~~~~Ge~~~ii~fn~~yLl--L~~~~-~d~i~l~ 342 (1161)
.|.|.++++++++++.+ +.|+++++++ ++++|++.+ ++||.+||. +++++ ++.|++.
T Consensus 153 ~V~i~~~~~~l~~s~~g-d~g~~~~~l~~~~~~~~~~~~e~~~-~~F~~~YL~~~~ka~~~s~~V~i~ 218 (245)
T 3fds_D 153 VLNIHSKENKLYFEVIG-DLSTAKVELSTDNGTLLEASGADVS-SSYGMEYVANTTKMRRASDSMELY 218 (245)
T ss_dssp EEEEEEETTEEEEEEEC-SSCEEEEEECTTSSSCSEEEECCCE-EEEEHHHHHHGGGGGGTCSEEEEE
T ss_pred EEEEEEeCCEEEEEEEe-cCcEEEEEEcCCCCceEEEecceEE-EEEEHHHHHHHhhhcccCCEEEEE
Confidence 69999999999999977 8999999987 577799999 999999998 99987 7888883
No 42
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A* 3p87_A 3vkx_A*
Probab=99.75 E-value=2.1e-17 Score=183.05 Aligned_cols=190 Identities=14% Similarity=0.195 Sum_probs=157.5
Q ss_pred cHHHHHHHHHhhcccccccccccceeeEEEEEECCEEEEEEecceEEEEEEEecCCCCCCc------ceEEEehhhHHHH
Q psy13360 134 SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSC------SDIIIPRKTVFTL 207 (1161)
Q Consensus 134 ~~~~L~~aI~~v~~a~s~~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~~~~~~------~~viIP~k~L~eL 207 (1161)
++..|+++++.+ +|+++|++|++++++|+++|||+||++.+.+.++...-.+ ..+.+|.+.+..+
T Consensus 8 ~~~~~k~i~~~i---------~~il~~v~~~~~~~gl~~~a~D~~rla~~~~~l~~~~f~~y~~~~~i~~~i~l~~l~ki 78 (261)
T 1u7b_A 8 QGSILKKVLEAL---------KDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKI 78 (261)
T ss_dssp CTHHHHHHHHHH---------HTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHH
T ss_pred chHHHHHHHHHH---------HHHhcEEEEEEeCCceEEEEECCCCEEEEEEEECHHhCeEEEeCCCeEEEEEHHHHHHH
Confidence 455565555544 4689999999999999999999999999988876432122 2456666666666
Q ss_pred HhhhcCCCCcEEEEEe--CcEEEEEECc------EEEEEeecCCCCCCccccccC-CcceEEEEeHHHHHHHHHHhhccc
Q psy13360 208 QRLLENKENPVELKIS--NNQIKIIFSN------IEIISKLIDGKFLDYKYVISN-KYEKSFLVNRNKLLRSLQRISIIS 278 (1161)
Q Consensus 208 ~klL~~~~~~V~i~~~--~~~l~f~~~~------~~~~~rli~g~fPdy~~vip~-~~~~~i~v~r~~L~~aL~Rv~~~s 278 (1161)
++.+.+ ++.|+|.++ ++++.|.+++ ..+.+|+++|+||+|+ +|. +++..+.+++.+|.++++|++.++
T Consensus 79 l~~~~~-~d~v~i~~~~~~~~l~~~~~~~~~~~~~~~~~rlie~~~~~~~--iP~~~~~~~i~~~~~~l~~ai~r~~~~s 155 (261)
T 1u7b_A 79 LKCAGN-EDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLG--IPEQEYSCVVKMPSGEFARICRDLSHIG 155 (261)
T ss_dssp HTTSCT-TCEEEEEECTTCSEEEEEEECTTSSCEEEEEEECCCCCCCCCB--CCCCCCSEEEEEEHHHHHHHHHHHHTTC
T ss_pred HhcCCC-CCEEEEEecCCCCEEEEEEEcCCCCeEEEEEEECccCCcccCC--CCCCcccEEEEEEHHHHHHHHHHHHhcC
Confidence 665533 567999998 5889999988 8999999999999997 886 899999999999999999999996
Q ss_pred cCCcceEEEEEeCCEEEEEEEcCCccccceeee-----------eeee-CCccceeeechhhhh--hcccC-cccccc
Q psy13360 279 NDKLKGVRLVIKPNYLKITVSSSNREKASEELE-----------INYN-GKDKNFIKFLIKIML--LKNKN-SYDIQD 341 (1161)
Q Consensus 279 ~~~~~~V~l~~~~~~L~isa~d~~~g~~~E~i~-----------~~~~-Ge~~~ii~fn~~yLl--L~~~~-~d~i~l 341 (1161)
+. |.|.++++.+++++. ++.|.+.++++ +.++ |++.. ++||.+||+ |++++ ++.|.+
T Consensus 156 ~~----v~i~~~~~~l~ls~~-~d~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~-i~f~~~yL~~~lka~~~s~~V~i 227 (261)
T 1u7b_A 156 DA----VVISCAKDGVKFSAS-GELGNGNIKLSQTSNVDKEEEAVTIEMNEPVQ-LTFALRYLNFFTKATPLSSTVTL 227 (261)
T ss_dssp SE----EEEEEETTEEEEEEE-ETTEEEEEEECCCC----CCSCCEEEESSCEE-EEEEHHHHHHHGGGGGGCSEEEE
T ss_pred CE----EEEEEECCEEEEEEE-ecCceEEEEEecCCCCCCCccceEEecCCcEE-EEEeHHHHHHHhCcccCCCeEEE
Confidence 43 999999999999996 49999999987 5788 89999 999999998 99998 888887
No 43
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A
Probab=99.74 E-value=1.6e-17 Score=182.57 Aligned_cols=194 Identities=12% Similarity=0.181 Sum_probs=152.1
Q ss_pred EEcHHHHHHHHHhhcccccccccccceeeEEEEEECCEEEEEEecceEEEEEEEecCCCCCCcc---eEEEehhhHHHHH
Q psy13360 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCS---DIIIPRKTVFTLQ 208 (1161)
Q Consensus 132 ~i~~~~L~~aI~~v~~a~s~~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~~~~~~~---~viIP~k~L~eL~ 208 (1161)
.+++..|+++++.+. .+++|++|++++++|+++|+|+||++.+.+.++...-+++ ..+ |+..+.+|.
T Consensus 5 ~~~a~~~k~i~~ai~---------~i~~~v~~~~~~~gl~~~A~D~~rvalv~~~l~~~~F~~y~~~~~v-~g~~l~~l~ 74 (247)
T 3ifv_A 5 IVSAATLRDALDSVS---------VLVDECKIRLNEESLSIRAVDPANVGMVDLTLDAAAFESYEAHGGV-IGVNLSRLE 74 (247)
T ss_dssp EECHHHHHHHHHHHH---------TTCSSEEEC---CEEEEEEECTTSSEEEEEEEEGGGSSBC-----C-EEECHHHHH
T ss_pred EEcHHHHHHHHHHHH---------HHhcEEEEEEeCCeEEEEEECCccEEEEEEEEchhcCeEEEccCcE-EEEEHHHHH
Confidence 458899988888775 6899999999999999999999999999888764421122 235 888999999
Q ss_pred hhhcC--CCCcEEEEEeC--cEEEEEECcEEEEEeecCCCCCCcccccc-CCcceEEEEeHHHHHHHHHHhhccccCCcc
Q psy13360 209 RLLEN--KENPVELKISN--NQIKIIFSNIEIISKLIDGKFLDYKYVIS-NKYEKSFLVNRNKLLRSLQRISIISNDKLK 283 (1161)
Q Consensus 209 klL~~--~~~~V~i~~~~--~~l~f~~~~~~~~~rli~g~fPdy~~vip-~~~~~~i~v~r~~L~~aL~Rv~~~s~~~~~ 283 (1161)
++|.. .++.|+|.+++ +++.|.+++..|.+|+++++||+|+..+| .+++..+++++.+|.++++|++.+++
T Consensus 75 kiL~~~~~~d~v~i~~~~~~~~l~~~~~~~~~~~rLid~~~~~~~~~iP~~e~~~~v~~~s~~f~~~i~~~~~~sd---- 150 (247)
T 3ifv_A 75 EVAGMAGAGDLIHLTLDEETRKLNIRIDGLSYTLALIDPDSIRQEPDIPDLDLAANIVLEGTHLDRGIKAADMVSD---- 150 (247)
T ss_dssp HHHTTC----CEEECC-------EEEETTEEEEC---CTTC----CCCCCCCCSEEEEEEHHHHHHHHHHHHHHCS----
T ss_pred HHHhcCCCCCEEEEEEcCCCCEEEEEEeCcEEEEEeecccccccCCCCCCCCceEEEEEEHHHHHHHHHHHHhhCC----
Confidence 98873 35679999877 78999999999999999999999999999 68999999999999999999999973
Q ss_pred eEEEEEe--CCEEEEEEEcCCccccceeee----eeeeCCccceeeechhhhh--hcccC-cccccc
Q psy13360 284 GVRLVIK--PNYLKITVSSSNREKASEELE----INYNGKDKNFIKFLIKIML--LKNKN-SYDIQD 341 (1161)
Q Consensus 284 ~V~l~~~--~~~L~isa~d~~~g~~~E~i~----~~~~Ge~~~ii~fn~~yLl--L~~~~-~d~i~l 341 (1161)
.|.|.++ ++.+++++.+ +.|.++++++ ++++|++.+ ++||.+||. +++++ ++.|.+
T Consensus 151 ~V~i~~~~~~~~~~~s~~g-d~g~~~~~l~~~~~~~~~~e~~~-~~F~~~YL~~~~Ka~~~s~~V~i 215 (247)
T 3ifv_A 151 HIRLRVDGAEETFHIEAEG-DTDDVDLSLPPADLISIEAGAAD-SLFSLDYLKDMNKAIPTDAEVTV 215 (247)
T ss_dssp EEEEEEETTTTEEEEEEEC-SSCEEEEEECGGGCSEEEECCCE-EEEEHHHHHHHHHHSCTTCEEEE
T ss_pred EEEEEEECCCCEEEEEEEe-cceEEEEEECCCceEEEecCeEE-EEEeHHHHHHhhhhccCCCEEEE
Confidence 5999999 8899999976 8999999887 577899999 999999998 99987 788888
No 44
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.72 E-value=4.2e-17 Score=194.14 Aligned_cols=181 Identities=17% Similarity=0.202 Sum_probs=133.5
Q ss_pred hhhccccccceeeccceEEeecCCCCccchhHHhHHHhhHhhhcCCC-CCeEEEEEecCC------cEEEEECCCccccc
Q psy13360 351 SIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGY-CTKINVTIYSDN------SISISDNGRGIPID 423 (1161)
Q Consensus 351 ~i~~L~~~e~vrkRP~mYiGs~~~~~gl~hlv~EivdNsiDe~~~g~-~~~I~V~i~~dg------sisV~DnGrGIPv~ 423 (1161)
.++.++..|.++++|+||+.+.+. ..|++++.|+|+||+|....|. ...|.|++..++ .|+|.|||+|||.+
T Consensus 7 ~~k~is~~eff~~~~~~~~~~~d~-~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e 85 (471)
T 1mu5_A 7 KFTSLSPAEFFKRNPELAGFPNPA-RALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQ 85 (471)
T ss_dssp ----CCHHHHHHHCGGGTTCSSHH-HHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGG
T ss_pred HHhhcCHHHhhhcCCceEEEeCCH-HHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCcCcEEEEEEEECCCCCCHH
Confidence 455566778899999999988886 6899999999999999886541 227999988754 69999999999998
Q ss_pred cccCCCCCCCCcceEEEEeeecccCCCCCCceeeecccccchhhHhhhhccE-----EEEEEEeCCE--EEEEEEE----
Q psy13360 424 IKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRF-----LQLTINRNKK--IHYMEFR---- 492 (1161)
Q Consensus 424 ~~~~~~~~~~~~~~e~v~t~l~ag~kfd~~~yk~sgGlhGvG~svvNalS~~-----~~V~v~r~g~--~~~q~f~---- 492 (1161)
..+. +|..+++++|+. .+. +.|.+|+|+++++.+++. +.|++..++. .+...+.
T Consensus 86 ~l~~------------iF~~f~~tsk~~--~~~-~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~ 150 (471)
T 1mu5_A 86 EVPN------------AFGRVLYSSKYV--NRQ-TRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDIN 150 (471)
T ss_dssp GHHH------------HHHCCCCC-CCC--CSC-CSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTT
T ss_pred HHHH------------Hhcccccccccc--ccc-CCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEecccc
Confidence 7765 788888999873 223 335599999999999987 8998887653 3333322
Q ss_pred --cCccccccccccCCccccCcEEe-ccCCCCCcEEEEEeCccccccCCCCH-HHHHHHHHhhhccCCCcEEEEeec
Q psy13360 493 --YGVLQNRIIKTINGISVSPIKII-GDTNKQGTKIHFWVDEKIFSNIEFHY-EILKKRIRELSFLNNGVCITLIDE 565 (1161)
Q Consensus 493 --~G~~~~~~~~~~~~~~~~~~~~~-g~~~~~GT~V~F~PD~~iF~~~~~~~-~~l~~Rl~elA~lnpgl~i~l~d~ 565 (1161)
.| .+..+ ... .....+||+|+++ |....++. +.+.++++++|+++|+++|.|.+.
T Consensus 151 ~~~g------------~~~~~-~~~~~~~~~~GT~V~v~-----l~~~~~e~~~~I~~~l~~~al~~p~v~i~l~~~ 209 (471)
T 1mu5_A 151 KNEP------------IIVER-GSVENTRGFHGTSVAIS-----IPGDWPKAKSRIYEYIKRTYIITPYAEFIFKDP 209 (471)
T ss_dssp TCCE------------EEEEE-EEEECCTTCCEEEEEEE-----EECCHHHHHHHHHHHHHHHHHHCTTCEEEEECT
T ss_pred ccCC------------ccccc-ccccCCCCCCCEEEEEE-----EcCCcchHHHHHHHHHHHHHhHCCCeEEEEEEC
Confidence 22 22222 222 1235789999998 43333344 689999999999999999999975
No 45
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis}
Probab=99.65 E-value=4.9e-15 Score=163.96 Aligned_cols=190 Identities=13% Similarity=0.225 Sum_probs=159.6
Q ss_pred cHHHHHHHHHhhcccccccccccceeeEEEEEECCEEEEEEecceEEEEEEEecCCCC------CCcceEEEehhhHHHH
Q psy13360 134 SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF------SSCSDIIIPRKTVFTL 207 (1161)
Q Consensus 134 ~~~~L~~aI~~v~~a~s~~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~~~------~~~~~viIP~k~L~eL 207 (1161)
++..|+++++.+. .+++|++|++++++|+++|+|++|++...+.++... +.+..+.|+.+.|..+
T Consensus 9 ~a~~lk~ii~ai~---------~i~~~v~~~~~~~gl~~~A~D~~rvalv~~~l~~~~F~~y~~~~~~~igi~l~~L~ki 79 (259)
T 3lx2_A 9 SAREFESLIATLE---------KFFDEAVFQVNMEGIQMRAIDPSRVVLVDLNLPEMLFSKYSVESEEAIAFDLKRFLKV 79 (259)
T ss_dssp CHHHHHHHHHHHH---------TTCSEEEEEECSSEEEEEEECTTSCEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHH
T ss_pred cHHHHHHHHHHHH---------HHhceEEEEEecCeEEEEEECCCCEEEEEEEEChHhcEEEEcCCCEEEEEEHHHHHHH
Confidence 4666766666653 468999999999999999999999999988776432 2234577887777777
Q ss_pred HhhhcCCCCcEEEEEe-CcEEEEEECc---EEEEEeecCCCCCCcccccc-CCcceEEEEeHHHHHHHHHHhhccccCCc
Q psy13360 208 QRLLENKENPVELKIS-NNQIKIIFSN---IEIISKLIDGKFLDYKYVIS-NKYEKSFLVNRNKLLRSLQRISIISNDKL 282 (1161)
Q Consensus 208 ~klL~~~~~~V~i~~~-~~~l~f~~~~---~~~~~rli~g~fPdy~~vip-~~~~~~i~v~r~~L~~aL~Rv~~~s~~~~ 282 (1161)
++..++ ++.|+|..+ ++++.|.+++ ..|.+|+++++||+|. +| .+++..+.+++.+|.++++|++.+++
T Consensus 80 Lk~~~~-~d~v~i~~~~~~~l~~~~e~~~~~~~~~rLid~~~~~~~--iP~~e~~~~v~~~s~~f~~~i~~~~~~sd--- 153 (259)
T 3lx2_A 80 LKLARS-RDTLVLRKGGENFLEVGLLGDENTWFKLPLIDANTPEIE--IPSLPWTVKAVVLAGALKRAVKAAKLVSD--- 153 (259)
T ss_dssp HTTCCT-TCEEEEEECSSSEEEEEEESSSEEEEEEECCCCCCCCCC--CCCCCCCEEEEEEHHHHHHHHHHHHHHCS---
T ss_pred HHhcCC-CCEEEEEECCCCEEEEEEecCceEEEEEEeeccCcccCC--CCCCceeEEEEEEHHHHHHHHHHHHhcCC---
Confidence 776653 567899866 4889999999 9999999999999985 67 68999999999999999999999974
Q ss_pred ceEEEEEeCCEEEEEEEcCCccccceeee------eeee-C-Cccceeeechhhhh--hccc-Ccccccc
Q psy13360 283 KGVRLVIKPNYLKITVSSSNREKASEELE------INYN-G-KDKNFIKFLIKIML--LKNK-NSYDIQD 341 (1161)
Q Consensus 283 ~~V~l~~~~~~L~isa~d~~~g~~~E~i~------~~~~-G-e~~~ii~fn~~yLl--L~~~-~~d~i~l 341 (1161)
.|.|.++++.+++++.+ +.|.++++++ +.++ | ++.+ +.||.+||. ++++ .++.|.+
T Consensus 154 -~V~i~~~~~~v~~ss~g-d~G~~~~~l~~~~~~~~~~~~~~e~~~-~~F~~~YL~~~~Ka~~~s~~V~l 220 (259)
T 3lx2_A 154 -SIYFMATPEKLTFKAEG-NDSEVRTVLTMEDPGLLDLEHKMTKAK-SAYGVAYLEDILRSLADADEVII 220 (259)
T ss_dssp -EEEEEECSSCEEEEEEC-SSCEEEEEECTTSTTEEEEEESSSCEE-EEEEHHHHHHHHSSSCTTSEEEE
T ss_pred -EEEEEEECCEEEEEEEe-cCcEEEEEEcCCCCceEEEEecCceEE-EEEEHHHHHhhhccccCCCeEEE
Confidence 59999999999999976 8999999995 6788 8 9999 999999998 9998 4778887
No 46
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae}
Probab=99.63 E-value=9e-13 Score=166.83 Aligned_cols=378 Identities=14% Similarity=0.185 Sum_probs=250.6
Q ss_pred eEEEccHHHHHHHHHHhhccccCCCchhhhccEEEEEECCeEEEEEecceeEEEEEeeecc------------cCCceEE
Q psy13360 3 LVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGY------------GNSSINI 70 (1161)
Q Consensus 3 ~~v~i~k~~L~~aL~~v~~~v~~k~~~piL~~Iliea~~~~L~ltatD~e~~i~~~i~a~~------------~~~~G~v 70 (1161)
.+|.+...+|.++++-+..+- ..|.|.+.++++.+++....-.....++... ..++.+.
T Consensus 141 ~~v~m~s~~f~~~~~dl~~~s---------d~v~i~~~~~~~~~s~~Gd~g~~~v~~~~~~~~~~~~~~~~i~~~e~~~~ 211 (798)
T 3k4x_A 141 STLSLPSSEFSKIVRDLSQLS---------DSINIMITKETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDL 211 (798)
T ss_dssp EEEEEEHHHHHHHHHHHTTTC---------SEEEEEEETTEEEEEEECSSEEEEEEECCBCCSSCGGGCBEEEESSCEEE
T ss_pred EEEEEEHHHHHHHHHHHHhhC---------CEEEEEEECCEEEEEEEecCcEEEEEEcCCCCCCCccceEEEEeCCceeE
Confidence 456788899999998888553 4699999999999998843222333332110 1346678
Q ss_pred EEechhHHHHHhcCCCCccEEEEEeCc-EEEE--EECcEEEEEccCC---CCCCC-CccCCCCcceEE-EEcHHHHHHHH
Q psy13360 71 IVAARKFIDILRSLPETEKVTIYIENK-HMFI--KSGKSKFTLQTLD---AKEYP-IMTLNSKYDFEF-TLSQKTLKCIL 142 (1161)
Q Consensus 71 ~V~ak~l~~Ivk~Lp~~~~I~ie~~~~-~l~I--~sG~~~~~l~~~~---~edfP-~~~~~~~~~~~~-~i~~~~L~~aI 142 (1161)
..+-+.|..+.|.++-.+.|++...++ -|.+ .-+.+..++-..| .++=. .+. ..+ .-.. --++..|+.++
T Consensus 212 ~ysl~yL~~~~Ka~~ls~~V~l~~~~~~PL~l~y~i~~G~l~f~lAPri~~~~~~~~~~-~~~-~~~a~~~~a~~~k~ii 289 (798)
T 3k4x_A 212 TFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKSGFLQFFLAPKFNDEGSNSQSN-GSG-ALEAKFEEASLFKRII 289 (798)
T ss_dssp EEEHHHHHHHGGGGGTCSEEEEEECSSSCEEEEEEETTEEEEEEECCC-----------------CEEEESCHHHHHHHH
T ss_pred EEEHHHHHHhhcccccCCEEEEEeCCCCcEEEEEEECCeEEEEEEccCCCCccchhhhc-chh-eEEEEeccHHHHHHHH
Confidence 889999999999988555799988643 2322 2244433332222 12111 000 000 0011 11244444444
Q ss_pred HhhcccccccccccceeeEEEEEECCEEEEEEecceEEEEEEEecCCC------CCCcceEEEehhhHHHHHhhhcCCCC
Q psy13360 143 NMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKK------FSSCSDIIIPRKTVFTLQRLLENKEN 216 (1161)
Q Consensus 143 ~~v~~a~s~~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~~------~~~~~~viIP~k~L~eL~klL~~~~~ 216 (1161)
+.+ ..++.+++|++.+++|+++|+|++|++...+.++.. .+++..+.||.+.|..+++.... ++
T Consensus 290 ~ai---------~~lvde~~f~~~~~Gl~~~A~D~~rvalv~l~l~~~aF~ey~~~~~~~igv~l~~L~kil~~~~~-~d 359 (798)
T 3k4x_A 290 DGF---------KDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNN-TD 359 (798)
T ss_dssp HHH---------TTTCSEEEEEEETTEEEEEEECTTSCEEEEEEEEGGGSSEEECSSCEEEEEEHHHHHHHTTSSCT-TS
T ss_pred HHH---------HHHhccEEEEEcCCeEEEEEECCCcEEEEEEECCHHHCceEecCCCEEEEEEHHHHHHHHhhCCC-CC
Confidence 443 467899999999999999999999999998877532 22345799998888888887754 56
Q ss_pred cEEEEEeC--cEEEEEECcE------EEEEeecCCCCCCccccccC-CcceEEEEeHHHHHHHHHHhhccccCCcceEEE
Q psy13360 217 PVELKISN--NQIKIIFSNI------EIISKLIDGKFLDYKYVISN-KYEKSFLVNRNKLLRSLQRISIISNDKLKGVRL 287 (1161)
Q Consensus 217 ~V~i~~~~--~~l~f~~~~~------~~~~rli~g~fPdy~~vip~-~~~~~i~v~r~~L~~aL~Rv~~~s~~~~~~V~l 287 (1161)
.+.+.+++ +++.|.+++. .|.+++++++||+ ..+|. +++..+++++.+|.++|+++..+++ .|.|
T Consensus 360 ~l~l~~~~~~~~l~~~~~~~~~~~~~~~~~~lid~~~~~--~~iP~~e~~~k~~i~~~~f~~al~~v~~vsd----~Iki 433 (798)
T 3k4x_A 360 TLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADF--LKIEELQYDSTLSLPSSEFSKIVRDLSQLSD----SINI 433 (798)
T ss_dssp BEEEECCSSCSEEEEEEECSSSSCEEEEEEECBCCCCCC--CCCCCCCCSEEEEEEHHHHHHHHHHHHTTCS----EEEE
T ss_pred eEEEEEeCCCCEEEEEEccCCceeEEEEEEecccCCCCC--CCCCCccccEEEEEEHHHHHHHHHHHHHhCC----eEEE
Confidence 79998886 8899988775 8999999999997 67786 8999999999999999999999764 6999
Q ss_pred EEeCCEEEEEEEcCCccccceeee--e---------eee-CCccceeeechhhhh--hcccC-ccccccccccccCcchh
Q psy13360 288 VIKPNYLKITVSSSNREKASEELE--I---------NYN-GKDKNFIKFLIKIML--LKNKN-SYDIQDTQESSYSASSI 352 (1161)
Q Consensus 288 ~~~~~~L~isa~d~~~g~~~E~i~--~---------~~~-Ge~~~ii~fn~~yLl--L~~~~-~d~i~l~~~~~y~~~~i 352 (1161)
.++++++++++. ++.|.+.++++ + ++. +++.. +.|+.+||. ++.++ +++|++...+++.. .|
T Consensus 434 ~~~~~~l~l~as-gd~g~~~i~i~~~i~~~~~~~~~~~~v~e~~~-~~f~~~YL~di~K~l~~s~~V~i~~~~~~Pl-~i 510 (798)
T 3k4x_A 434 MITKETIKFVAD-GDIGSGSVIIKPFVDMEHPETSIKLEMDQPVD-LTFGAKYLLDIIKGSSLSDRVGIRLSSEAPA-LF 510 (798)
T ss_dssp EEETTEEEEEEE-CSSCEEEEEECCBCCSSSGGGCBEEEESSCEE-EEEEHHHHHHHGGGGGTCSEEEEEECSSSCE-EE
T ss_pred EEeCCEEEEEEE-ecCCceEEEEeeccccCCCcceEEEEcCCceE-EEEEHHHHHHHHhhcCCCCEEEEEECCCCCE-EE
Confidence 999999999997 57888777765 1 122 56666 999999997 88888 68888832222111 11
Q ss_pred h-cccc-ccceeeccceEEeecCCCCcc-------------chhHHhHHHhhHhhhcCCCCCeEEEEEecCC-cEEEEEC
Q psy13360 353 Q-ILEG-LEAVRKRPEMYIGDTSDGTGL-------------HHFVFEILDNAIDESLAGYCTKINVTIYSDN-SISISDN 416 (1161)
Q Consensus 353 ~-~L~~-~e~vrkRP~mYiGs~~~~~gl-------------~hlv~EivdNsiDe~~~g~~~~I~V~i~~dg-sisV~Dn 416 (1161)
+ .+.| ...--.=|-+ +..+. --+ -.+++.|++ |+....+.+.+.+.++| ++...|+
T Consensus 511 ~f~i~gg~~~y~laPri--~~~~~-~~~~~~~~mfea~l~~~~~lk~ii~-----ai~~iv~~~~~~~~~~Gi~~~a~D~ 582 (798)
T 3k4x_A 511 QFDLKSGFLQFFLAPKF--NDEGS-NSQASNSGALEAKFEEASLFKRIID-----GFKDCVQLVNFQCKEDGIIAQAVDD 582 (798)
T ss_dssp EEEETTEEEEEEECCCC--C--------------CEEEESSHHHHHHHHH-----TTTTTCSEEEEEEETTEEEEEEECT
T ss_pred EEEEcCcEEEEEEcCCC--CCccc-eeeccccceEEEEcCchHHHHHHHH-----HHHHHhCcEEEEEECCeEEEEEECC
Confidence 1 1111 1111111111 10000 012 344555655 57788899999998888 4666676
Q ss_pred CC
Q psy13360 417 GR 418 (1161)
Q Consensus 417 Gr 418 (1161)
.|
T Consensus 583 s~ 584 (798)
T 3k4x_A 583 SR 584 (798)
T ss_dssp TS
T ss_pred Cc
Confidence 54
No 47
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica}
Probab=99.62 E-value=2e-14 Score=159.60 Aligned_cols=194 Identities=12% Similarity=0.147 Sum_probs=161.9
Q ss_pred EEE-cHHHHHHHHHhhcccccccccccceeeEEEEEECCEEEEEEecceEEEEEEEecCCCC------CCcceEEEehhh
Q psy13360 131 FTL-SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF------SSCSDIIIPRKT 203 (1161)
Q Consensus 131 ~~i-~~~~L~~aI~~v~~a~s~~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~~~------~~~~~viIP~k~ 203 (1161)
..+ ++..|+++++.+. |+++|++|++++++|+++|+|++|++.+.+.++... +.+..+.++.+.
T Consensus 9 a~~~~a~~lk~ii~ai~---------~i~~~v~~~~~~~gl~~~A~D~~rvalv~~~l~~~~F~~y~~d~~~~igi~l~~ 79 (265)
T 3p91_A 9 AKFKEAALFKRVVESLK---------STIDKTNFDCSDAGIAVQCMDNSHVSLVSLLIETDAFDEFQCLKPITLGINLTH 79 (265)
T ss_dssp EEESCHHHHHHHHHHHH---------TTCSEEEEEEETTEEEEEEECTTSSSEEEEEECGGGEEEEECSSCEEEEEEHHH
T ss_pred EEECchHHHHHHHHHHH---------HHhceEEEEEeCCeEEEEEECCCcEEEEEEEEChhhceEEEeCCCeEEEEEHHH
Confidence 344 6888888887764 689999999999999999999999999988876432 223457777777
Q ss_pred HHHHHhhhcCCCCcEEEEEeCc--EEEEEECc-----EEEEEeecCCCCCCcccccc-CCcceEEEEeHHHHHHHHHHhh
Q psy13360 204 VFTLQRLLENKENPVELKISNN--QIKIIFSN-----IEIISKLIDGKFLDYKYVIS-NKYEKSFLVNRNKLLRSLQRIS 275 (1161)
Q Consensus 204 L~eL~klL~~~~~~V~i~~~~~--~l~f~~~~-----~~~~~rli~g~fPdy~~vip-~~~~~~i~v~r~~L~~aL~Rv~ 275 (1161)
|..+++...+ ++.|+|.++++ ++.|.+++ ..|.+|+++++||++ .+| .+++..+.+++.+|.++++|++
T Consensus 80 L~kiLk~~~~-~d~v~i~~~~~~~~l~~~~e~~~~~~i~~~lrLid~~~~~~--~iP~~e~~~~v~~~s~~f~~~i~~~~ 156 (265)
T 3p91_A 80 LSKILKALDN-DCGLILDVKKVDDAVLSITSEGTNKTMKFGLNLVDIEAESV--EIPELQSDAIITLSSAEFLKITKDFS 156 (265)
T ss_dssp HHHHHTTSCT-TSEEEEEECSSSSEEEEEEEC--CCEEEEEEECCCCCCCCC--CCCCCCCSEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHhhcCC-CCEEEEEEcCCCCeEEEEEEeCCCceEEEEEEecccCcccC--CCCCCCccEEEEEEHHHHHHHHHHHH
Confidence 7777776643 56799999875 88888876 489999999999985 577 6899999999999999999999
Q ss_pred ccccCCcceEEEEEeCCEEEEEEEcCCccccceeee---------eeee-CCccceeeechhhhh--hcccC-cccccc
Q psy13360 276 IISNDKLKGVRLVIKPNYLKITVSSSNREKASEELE---------INYN-GKDKNFIKFLIKIML--LKNKN-SYDIQD 341 (1161)
Q Consensus 276 ~~s~~~~~~V~l~~~~~~L~isa~d~~~g~~~E~i~---------~~~~-Ge~~~ii~fn~~yLl--L~~~~-~d~i~l 341 (1161)
.++.+ .|.|.++++.+++++.+ +.|.+.++++ +.++ |++.+ +.||.+||. ++++. ++.|.+
T Consensus 157 ~~s~d---~V~i~~~~~~v~~ss~g-d~G~~~~~l~~~~~~~~~~~~~~~~e~~~-~~F~~~YL~~~~Ka~~ls~~V~i 230 (265)
T 3p91_A 157 ALGDD---SITIGCTKNEVTLTTKG-AMCETCMTLSALENVDSNGLQIEHNKDVT-ASFALKQISEFAKSAPLADNVKL 230 (265)
T ss_dssp HHCCS---EEEEEECSSEEEEEEEC-SSCEEEEEEEC-------CCEEEESSCEE-EEEEHHHHHHHGGGGGGCSEEEE
T ss_pred hCCCC---EEEEEEECCEEEEEEEe-cCceEEEEEecCCCCCCceEEEEcCCcEE-EEEEHHHHHHhhcccccCCEEEE
Confidence 99843 59999999999999976 8999999886 4567 89999 999999998 99987 888887
No 48
>3p16_A DNA polymerase III subunit beta; DNA polymerase III sliding clamp, transferase; HET: DNA; 2.89A {Mycobacterium tuberculosis} PDB: 3rb9_A*
Probab=99.60 E-value=4.1e-14 Score=165.66 Aligned_cols=203 Identities=15% Similarity=0.207 Sum_probs=163.7
Q ss_pred ceEEEEcHHHHHHHHHhhcccccccccccceeeEEEEEECCEEEEEEecceEEEEEEEecCCCCCCcceEEEehhhHHHH
Q psy13360 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTL 207 (1161)
Q Consensus 128 ~~~~~i~~~~L~~aI~~v~~a~s~~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~~~~~~~~viIP~k~L~eL 207 (1161)
..+|.|+.+.|.++|+.+..+++++.+.|+|+||+|+++++.|+++|||...-....++.+. ++++.++||++.+.++
T Consensus 18 ~Mkf~i~r~~L~~aL~~v~~~v~~r~t~PIL~~ili~a~~~~L~ltatDlei~i~~~i~a~v--~e~G~i~v~ak~l~dI 95 (408)
T 3p16_A 18 DLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEI--VSPGSVLVSGRLLSDI 95 (408)
T ss_dssp CCEEEEEHHHHHHHHHHHTTSSCSCCSSGGGSEEEEEECSSEEEEEECCSSCCEEEEEECCC--SBCEEEEEEHHHHHHH
T ss_pred CeEEEEEHHHHHHHHHHHHhhhCCCCChHHhCcEEEEEECCEEEEEEECCceEEEEEEEEEe--cCCeEEEEEHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999877777777643 4567999999999999
Q ss_pred HhhhcCCCCcEEEEEeCcEEEEEECcEEEEEeecC-CCCCCccccccCCcceEEEEeHHHHHHHHHHhhccccCCc----
Q psy13360 208 QRLLENKENPVELKISNNQIKIIFSNIEIISKLID-GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKL---- 282 (1161)
Q Consensus 208 ~klL~~~~~~V~i~~~~~~l~f~~~~~~~~~rli~-g~fPdy~~vip~~~~~~i~v~r~~L~~aL~Rv~~~s~~~~---- 282 (1161)
+|.|++ ++|++..+++++.+++++..|....++ .+||.+..+ + ...++++...|.++|+++.++++.+.
T Consensus 96 vr~Lp~--~~I~l~~~~~~l~I~~g~s~f~L~~l~~~dfP~lp~~-~---~~~~~i~~~~L~~~I~~t~fA~s~de~rp~ 169 (408)
T 3p16_A 96 TRALPN--KPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPTL-P---EETGLLPAELFAEAISQVAIAAGRDDTLPM 169 (408)
T ss_dssp HHHSCS--SEEEEEEETTEEEEEBTTEEEEEEEECTTTSCCCCCC-C---CEEEEECHHHHHHHHHHHTTSSCCSSSCCC
T ss_pred HHhCCC--CcEEEEEeCCEEEEEECCEEEEEecCCHHHCCCCCCC-C---CcEEEEcHHHHHHHHhhheecccCccchhh
Confidence 999985 359999999999999999999999777 789988663 2 23789999999999999999886654
Q ss_pred -ceEEEEEeCCEEEEEEEcCC-ccccceeeeeeeeCC--ccceeeechhhhh--hcccC-cccccc
Q psy13360 283 -KGVRLVIKPNYLKITVSSSN-REKASEELEINYNGK--DKNFIKFLIKIML--LKNKN-SYDIQD 341 (1161)
Q Consensus 283 -~~V~l~~~~~~L~isa~d~~-~g~~~E~i~~~~~Ge--~~~ii~fn~~yLl--L~~~~-~d~i~l 341 (1161)
++|.|+++++.|+++|+|+. .+.. +++...... +.. +-+-.+.|. .+.++ ++.|.+
T Consensus 170 L~Gv~~~~~~~~l~~VATDghRLA~~--~~~~~~~~~~~~~~-~iIP~k~l~el~kll~~~~~V~i 232 (408)
T 3p16_A 170 LTGIRVEILGETVVLAATDRFRLAVR--ELKWSASSPDIEAA-VLVPAKTLAEAAKAGIGGSDVRL 232 (408)
T ss_dssp SCEEEEEEETTEEEEEEECSSEEEEE--EEECBCSSSSCEEE-EEEEHHHHHHHHHTCCSSSCEEE
T ss_pred ceEEEEEEECCEEEEEEcCcceEEEE--eccccccCCCCcee-EEEEHHHHHHHHHhcCCCCcEEE
Confidence 68999999999999999976 4433 333321111 223 445556554 44443 455655
No 49
>3t0p_A DNA polymerase III, beta subunit; DNA clamp, structural genomics, joint center for structural JCSG, protein structure initiative; HET: DNA MSE; 2.26A {Eubacterium rectale}
Probab=99.60 E-value=2.7e-14 Score=165.73 Aligned_cols=203 Identities=15% Similarity=0.093 Sum_probs=163.6
Q ss_pred eEEEEcHHHHHHHHHhhcccccccccccceeeEEEEEECCEEEEEEecceEEEEEEEecCCCCCCcceEEEehhhHHHHH
Q psy13360 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQ 208 (1161)
Q Consensus 129 ~~~~i~~~~L~~aI~~v~~a~s~~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~~~~~~~~viIP~k~L~eL~ 208 (1161)
.+|.|+.+.|.++++.|..+++++.+.|+|+||+|+++++.|+++|||...-....++.+. ++++.++||++.+.+++
T Consensus 2 Mkf~i~r~~L~~~l~~v~~~v~~r~t~pIL~~ili~a~~~~L~ltatD~ei~i~~~i~a~v--~~~G~~~v~ak~l~div 79 (371)
T 3t0p_A 2 MKLICSKANLLKGVNIVSKAVPTRTTMAILECILIDASANEIKLMANDMELGIETIIDGTI--EERGIIALDAKIFSEIV 79 (371)
T ss_dssp CEEEEEHHHHHHHHHHHGGGSCSSCSSGGGGEEEEEESSSSEEEEEECSSEEEEEEECCEE--EECEEEEEEHHHHHHHH
T ss_pred eEEEEEHHHHHHHHHHHHhhcCCCCChHHhCCEEEEEECCEEEEEEeCcEEEEEEEEEEEE--ccCeEEEEEHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999998877777776543 34579999999999999
Q ss_pred hhhcCCCCcEEEEEeCc-EEEEEECcEEEEEeecC-CCCCCccccccCCcceEEEEeHHHHHHHHHHhhccccCCc----
Q psy13360 209 RLLENKENPVELKISNN-QIKIIFSNIEIISKLID-GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKL---- 282 (1161)
Q Consensus 209 klL~~~~~~V~i~~~~~-~l~f~~~~~~~~~rli~-g~fPdy~~vip~~~~~~i~v~r~~L~~aL~Rv~~~s~~~~---- 282 (1161)
|.|++ ++|++..+++ ++.+++++..|....++ .+||.++.+ +....++++...|.++|+++.++++.+.
T Consensus 80 r~Lp~--~~i~l~~~~~~~l~I~~g~s~f~l~~~~~~dfP~lp~~---~~~~~~~i~~~~L~~~I~~t~fA~s~de~r~~ 154 (371)
T 3t0p_A 80 RKLPD--NDVTIETDASFKTVISCEKAKFNIIGKSGDDFSYIPYV---ERNESIVLSQFTLKEVIRQTIFSIADNDNNKL 154 (371)
T ss_dssp HHSCS--SEEEEEECTTCEEEEEETTEEEEEECBCGGGSCCCCCC---CCCSEEEEEHHHHHHHHHTTGGGSCSSSSSTG
T ss_pred HhCCC--CcEEEEECCCCeEEEEECCEEEEEccCCHHHCCCCCCC---CCCeEEEECHHHHHHHHhheeEEeeCCCCchh
Confidence 99985 3699998876 89999999999999876 689988653 3456899999999999999999986654
Q ss_pred -ceEEEEEeCCEEEEEEEcCC-ccccceeeeeeeeCCccceeeechhhhh--hcccC---cccccc
Q psy13360 283 -KGVRLVIKPNYLKITVSSSN-REKASEELEINYNGKDKNFIKFLIKIML--LKNKN---SYDIQD 341 (1161)
Q Consensus 283 -~~V~l~~~~~~L~isa~d~~-~g~~~E~i~~~~~Ge~~~ii~fn~~yLl--L~~~~---~d~i~l 341 (1161)
++|.|+++++.|+++|+|+. .+..+..+ +-..++.. +-+-.+.|. .+.++ ++.|.+
T Consensus 155 L~Gv~~~~~~~~l~~vATDg~RLa~~~~~~--~~~~~~~~-~iIP~k~l~el~kll~~~~~~~V~i 217 (371)
T 3t0p_A 155 MTGELFEIEENKLRVVSLDGHRISIRYIEM--KNHYDSKK-VVVPGKTLQEISKIIPGSADEDVVI 217 (371)
T ss_dssp GGEEEEEEEEEEEEEEEECSSEEEEEEEEE--EEEEEEEE-EEEEHHHHHHHHHHCCCCTTSEEEE
T ss_pred ceEEEEEEECCEEEEEEecceEEEEEEecc--CCCCCceE-EEEEHHHHHHHHHhcCcCCCceEEE
Confidence 78999999999999999986 44433333 22223334 445556554 34443 345665
No 50
>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A* 1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 3q4j_A* 3q4k_A* 3qsb_A* 3q4l_A* 2xur_A* 1jql_A* 1jqj_A* 3f1v_A* 3pwe_A*
Probab=99.58 E-value=1.1e-13 Score=160.57 Aligned_cols=173 Identities=13% Similarity=0.149 Sum_probs=150.8
Q ss_pred EEEEcHHHHHHHHHhhcccccccccccceeeEEEEEECCEEEEEEecceEEEEEEEecCCCCCCcceEEEehhhHHHHHh
Q psy13360 130 EFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQR 209 (1161)
Q Consensus 130 ~~~i~~~~L~~aI~~v~~a~s~~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~~~~~~~~viIP~k~L~eL~k 209 (1161)
+|.|+.+.|.++++.+..+++++.+.|+|+||+|+++++.|+++|||...-....++.. ...+++.++||++.+.+++|
T Consensus 2 kf~i~~~~L~~~l~~v~~~v~~r~t~piL~~ili~a~~~~L~l~atD~ei~i~~~i~~~-~v~~~G~~~v~ak~l~divr 80 (366)
T 3d1g_A 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV-QPHEPGATTVPARKFFDICR 80 (366)
T ss_dssp EEEEEHHHHHHHHHHHSTTCSSCCCSGGGGEEEEEEETTEEEEEEECSSEEEEEEEECC-SCCBCEEEEEEHHHHHHHHH
T ss_pred EEEEEHHHHHHHHHHHHhhcCCCCChhHhcCeEEEEeCCcEEEEEecceEEEEEEEEcc-eeccCeEEEEEhHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999887777777651 23456899999999999999
Q ss_pred hhcCCCCcEEEEEeCcEEEEEECcEEEEEeecC-CCCCCccccccCCcceEEEEeHHHHHHHHHHhhccccCCc-----c
Q psy13360 210 LLENKENPVELKISNNQIKIIFSNIEIISKLID-GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKL-----K 283 (1161)
Q Consensus 210 lL~~~~~~V~i~~~~~~l~f~~~~~~~~~rli~-g~fPdy~~vip~~~~~~i~v~r~~L~~aL~Rv~~~s~~~~-----~ 283 (1161)
.|++ +.+|++..+++++.+++|+..|....++ .+||.+..+ +....++++...|.++|+++.++++.+. +
T Consensus 81 ~Lp~-~~~i~~~~~~~~l~I~~g~s~f~l~~~~~~~fP~~~~~---~~~~~~~i~~~~l~~~i~~t~fA~s~de~r~~L~ 156 (366)
T 3d1g_A 81 GLPE-GAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDW---QSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLN 156 (366)
T ss_dssp HSCT-TCEEEEEEETTEEEEEETTEEEEEECBCGGGSCCCCCC---CCSEEEEECHHHHHHHHHHHGGGSCSSCSSGGGS
T ss_pred cCCC-CCcEEEEEeCCEEEEEECCEEEEEcCCCHHHCCCCCCC---CCceEEEECHHHHHHHHhheeEEeccCCCccceE
Confidence 9985 3479999999999999999999999777 799988653 2346899999999999999999987765 6
Q ss_pred eEEEEEeCCEEEEEEEcCC-ccccc
Q psy13360 284 GVRLVIKPNYLKITVSSSN-REKAS 307 (1161)
Q Consensus 284 ~V~l~~~~~~L~isa~d~~-~g~~~ 307 (1161)
+|.|+++++.|+++|+|+. .+..+
T Consensus 157 Gv~~~~~~~~l~~vATDg~RLa~~~ 181 (366)
T 3d1g_A 157 GMLFETEGEELRTVATDGHRLAVCS 181 (366)
T ss_dssp EEEEEEEEEEEEEEEECSSEEEEEE
T ss_pred EEEEEEeCCEEEEEEeCCccEEEEE
Confidence 8999999999999999987 44433
No 51
>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A*
Probab=99.55 E-value=1.7e-13 Score=159.66 Aligned_cols=169 Identities=14% Similarity=0.211 Sum_probs=146.5
Q ss_pred eEEEEcHHHHHHHHHhhcccccccccccceeeEEEEEECCEEEEEEecceEEEEEEEecCC-----CCCCcceEEEehhh
Q psy13360 129 FEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDK-----KFSSCSDIIIPRKT 203 (1161)
Q Consensus 129 ~~~~i~~~~L~~aI~~v~~a~s~~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~-----~~~~~~~viIP~k~ 203 (1161)
.+|.|+.+.|.++++.|..+++++.+.|+|+||+|+++++.|+++|||...-....++.+. ...+++.++||++.
T Consensus 2 Mkf~i~~~~L~~~l~~v~~~v~~r~t~PiL~~ill~a~~~~L~ltatD~ei~i~~~i~~~~~~~~~~v~~~G~~~v~ak~ 81 (378)
T 2avt_A 2 IQFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVSNENAGLLITSPGAILLEASF 81 (378)
T ss_dssp CEEEEEHHHHHHHHHHHGGGCCSSCSSGGGGEEEEEEETTEEEEEEECSSEEEEEEEEC-----CEEEEECEEEEEEHHH
T ss_pred EEEEEEHHHHHHHHHHHHhhcCCCCChhHhcCeEEEEECCEEEEEEECCeEEEEEEEecccccccceeccCeEEEEEhHH
Confidence 3689999999999999999999999999999999999999999999998877777776521 22345799999999
Q ss_pred HHHHHhhhcCCCCcEEEEEeCc-EEEEEECcEEEEEeecC-CCCCCccccccCCcceEEEEeHHHHHHHHHHhhccccCC
Q psy13360 204 VFTLQRLLENKENPVELKISNN-QIKIIFSNIEIISKLID-GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDK 281 (1161)
Q Consensus 204 L~eL~klL~~~~~~V~i~~~~~-~l~f~~~~~~~~~rli~-g~fPdy~~vip~~~~~~i~v~r~~L~~aL~Rv~~~s~~~ 281 (1161)
+.+++|.|++ ++|++...++ ++.+++|+..|....++ .+||.++.+ +....++++...|.++|+++.++++.+
T Consensus 82 l~divr~Lp~--~~v~~~~~~~~~l~I~~g~s~f~l~~~~~~~fP~l~~~---~~~~~~~i~~~~l~~~i~~t~fA~s~d 156 (378)
T 2avt_A 82 FINIISSLPD--ISINVKEIEQHQVVLTSGKSEITLKGKDVDQYPRLQEV---STENPLILKTKLLKSIIAETAFAASLQ 156 (378)
T ss_dssp HHHHHHHCSS--SEEEEEEETTTEEEEEETTEEEEEECBCGGGSCCCCCC---CCSSCEEEEHHHHHHHHHHHGGGSCCC
T ss_pred HHHHHHhCCC--CcEEEEECCCCEEEEEECCEEEEEccCCHHHCCCCCCC---CCCeEEEECHHHHHHHHhheEEEEECC
Confidence 9999999985 4699988765 89999999999999777 799988654 234579999999999999999998765
Q ss_pred c-----ceEEEEEeCC-EEEEEEEcCC
Q psy13360 282 L-----KGVRLVIKPN-YLKITVSSSN 302 (1161)
Q Consensus 282 ~-----~~V~l~~~~~-~L~isa~d~~ 302 (1161)
. ++|.|+++++ .|+++|+|+.
T Consensus 157 e~r~~L~Gv~~~~~~~~~l~~vATDg~ 183 (378)
T 2avt_A 157 ESRPILTGVHIVLSNHKDFKAVATDSH 183 (378)
T ss_dssp TTSGGGGEEEEEEETTTEEEEEEECSS
T ss_pred CCcceeEEEEEEECCCCeEEEEEecCe
Confidence 5 6899999999 9999999976
No 52
>3aiz_C DNA polymerase sliding clamp C; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_A*
Probab=98.93 E-value=1.5e-07 Score=102.89 Aligned_cols=209 Identities=10% Similarity=0.127 Sum_probs=148.0
Q ss_pred CceEEEccHHHHHHHHHHhhccccCCCchhhhccEEEEEECCeEEEEEecceeEEEEEeeeccc-CCceEE---EEechh
Q psy13360 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG-NSSINI---IVAARK 76 (1161)
Q Consensus 1 Mk~~v~i~k~~L~~aL~~v~~~v~~k~~~piL~~Iliea~~~~L~ltatD~e~~i~~~i~a~~~-~~~G~v---~V~ak~ 76 (1161)
|+|+.. +...|.++++.+ .|++.++++++.+++|++.|||+..-..+.+..... -++-.+ ++|++.
T Consensus 1 M~fr~~-~~~~lk~~i~~~---------~~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~i~~~~~ 70 (246)
T 3aiz_C 1 MRVKVI-DADAFSYIFRTL---------EEFIDEITLDFTSDGLKIRGIDPSRVTFIDILIPAGYFEEYNVEKEEKVGVK 70 (246)
T ss_dssp CEEEES-CHHHHHHHHHHH---------TTTCSEEEEEECSSEEEEEEECTTSCEEEEEEEEGGGSSEEECSSCEEEEEE
T ss_pred CceEEe-cHHHHHHHHHHH---------HHHhcEEEEEEcCCeEEEEEECCCcEEEEEEEEChHhCcEEEcCCCeEEEEE
Confidence 888866 788888888887 478899999999999999999987555544443221 122222 345555
Q ss_pred HHHHHhcC---CCCccEEEEEeC-cEEEEEECc---EEEEEccCCCCCCCCccCCC-CcceEEEEcHHHHHHHHHhhccc
Q psy13360 77 FIDILRSL---PETEKVTIYIEN-KHMFIKSGK---SKFTLQTLDAKEYPIMTLNS-KYDFEFTLSQKTLKCILNMVYFS 148 (1161)
Q Consensus 77 l~~Ivk~L---p~~~~I~ie~~~-~~l~I~sG~---~~~~l~~~~~edfP~~~~~~-~~~~~~~i~~~~L~~aI~~v~~a 148 (1161)
+.++.|-| .+++.|++..++ +++.+..++ ..|.+..+++ +||+++.+. +....+.++...|.++++++...
T Consensus 71 l~~l~kiL~~~~~~~~v~i~~~~~~~l~~~~~~~~~~~~~~rlidg-~~p~~~iP~~~~~~~i~i~~~~l~~a~~r~~~l 149 (246)
T 3aiz_C 71 LEDFTDVLKTVTKNDSLYLETDENQNIKVTLDGVYERTFTFPSIVA-SEIETPNLNLEFPFKAKALTVTFTDIIDEIEDI 149 (246)
T ss_dssp HHHHHHHHTTCCTTCEEEEEECSSSCEEEEEESSSEEEEEECCCCC-CCCCCSCSCCCCSEEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCCEEEEEECCCCeEEEEEecCcEEEEEEEcccC-CcccCCCCCCcccEEEEEEHHHHHHHHHHHhhC
Confidence 55555544 334468888876 599999988 8999999985 578877443 56789999999999999999765
Q ss_pred ccccccccceeeEEEEEECCEEEEEEecceEEEEEEEecCC------CC-CCcceEEEehhhHHHHHhhhcCCCCcEEEE
Q psy13360 149 IAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDK------KF-SSCSDIIIPRKTVFTLQRLLENKENPVELK 221 (1161)
Q Consensus 149 ~s~~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~------~~-~~~~~viIP~k~L~eL~klL~~~~~~V~i~ 221 (1161)
.+.. |.|.++++.+++.+. +. +......++. .. .++.++....+.|.++++.++- .++|.+.
T Consensus 150 ~s~~--------V~l~~~~~~l~ls~~-~d-~g~~~~~l~~~~~~~~~~~ge~~~i~Fn~~yL~d~lk~~~~-s~~V~l~ 218 (246)
T 3aiz_C 150 GGDS--------ITFKAEGGKLYLSAN-SD-MGSSTIELSTENGGLLESEGGDAESVYGLEYVVNTSKMRKP-SDTVEIA 218 (246)
T ss_dssp CCSE--------EEEEEETTEEEEEEE-CS-SCEEEEEECTTTTSCSEEEECCEEEEEEHHHHHTTGGGTTT-CSEEEEE
T ss_pred CCCE--------EEEEEECCEEEEEEE-cC-CceEEEEEecCCCccEEEEEeeEEEEEEHHHHHHHhhhccC-CCeEEEE
Confidence 2321 899999999999864 43 3333333331 11 1346899999999999999862 3568888
Q ss_pred EeCcE-EEEEE
Q psy13360 222 ISNNQ-IKIIF 231 (1161)
Q Consensus 222 ~~~~~-l~f~~ 231 (1161)
++++. +.++.
T Consensus 219 ~~~~~p~~i~~ 229 (246)
T 3aiz_C 219 FGSQIPLKLRY 229 (246)
T ss_dssp EETTEEEEEEE
T ss_pred ecCCCcEEEEE
Confidence 87654 44543
No 53
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A 3lx1_A*
Probab=98.86 E-value=9.3e-07 Score=96.76 Aligned_cols=209 Identities=10% Similarity=0.126 Sum_probs=145.5
Q ss_pred CceEEEc-cHHHHHHHHHHhhccccCCCchhhhccEEEEEECCeEEEEEecceeEEEEEeeeccc--C-----CceEEEE
Q psy13360 1 MQLVVNT-EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG--N-----SSINIIV 72 (1161)
Q Consensus 1 Mk~~v~i-~k~~L~~aL~~v~~~v~~k~~~piL~~Iliea~~~~L~ltatD~e~~i~~~i~a~~~--~-----~~G~v~V 72 (1161)
|+|...+ +-+.|.+.++.+. |++.++++++.+++|++.|||+..-..+.+..... . .+-.+.+
T Consensus 1 M~f~a~~~~~~~~~~i~~~i~---------~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~~~~~~ 71 (249)
T 1iz5_A 1 MPFEIVFEGAKEFAQLIDTAS---------KLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGV 71 (249)
T ss_dssp -CEEEEEECHHHHHHHHHHHT---------SSCSEEEEEECSSEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEE
T ss_pred CcEEEEeCchHHHHHHHHHHH---------HHhcEEEEEEeCCeEEEEEECCCcEEEEEEEECHHhCcEEEcCCCeEEEE
Confidence 6776544 4455555565554 45699999999999999999986544444433211 1 1246788
Q ss_pred echhHHHHHhcCCCCccEEEEEeCc-EEEEEECc---EEEEEccCCCCCCCCccCCC-CcceEEEEcHHHHHHHHHhhcc
Q psy13360 73 AARKFIDILRSLPETEKVTIYIENK-HMFIKSGK---SKFTLQTLDAKEYPIMTLNS-KYDFEFTLSQKTLKCILNMVYF 147 (1161)
Q Consensus 73 ~ak~l~~Ivk~Lp~~~~I~ie~~~~-~l~I~sG~---~~~~l~~~~~edfP~~~~~~-~~~~~~~i~~~~L~~aI~~v~~ 147 (1161)
+.+.|.++++.+.+++.|++..+++ ++.+..++ ..|.+..+++ +||+++.+. +....+.++...|.++++++..
T Consensus 72 ~l~~l~kil~~~~~~~~v~i~~~~~~~l~f~~~~~~~~~~~~rlidg-~~p~~~iP~~~~~~~v~i~~~~l~~a~~r~~~ 150 (249)
T 1iz5_A 72 NLDHLKKILKRGKAKDTLILKKGEENFLEITIQGTATRTFRVPLIDV-EEMEVDLPELPFTAKVVVLGEVLKAAVKAASL 150 (249)
T ss_dssp EHHHHHHHHTTCCTTCEEEEEECSSSEEEEEEESSSEEEEEEECBCC-CC-----CCCCCCEEEEEEHHHHHHHHHHHTT
T ss_pred EHHHHHHHHHhCCCCCEEEEEECCCCeEEEEEecCCEEEEEEEcccC-CccCCCCCCCcceEEEEEEHHHHHHHHHHHHh
Confidence 8888999988775554799998887 99999988 8999999985 578876543 5678999999999999999976
Q ss_pred cccccccccceeeEEEEEECCEEEEEEecceEEEEEEEecCC------CC--CCcceEEEehhhHHHHHhhhcCCCCcEE
Q psy13360 148 SIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDK------KF--SSCSDIIIPRKTVFTLQRLLENKENPVE 219 (1161)
Q Consensus 148 a~s~~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~------~~--~~~~~viIP~k~L~eL~klL~~~~~~V~ 219 (1161)
... + |.|.++++.+++.+. +. +......++. .. .++.++....+.|.++++.++- .++|.
T Consensus 151 ls~--~-------V~l~~~~~~l~ls~~-~d-~g~~~~~l~~~~~~~~~~~~ge~~~i~Fn~~yL~d~lk~~~~-s~~V~ 218 (249)
T 1iz5_A 151 VSD--S-------IKFIARENEFIMKAE-GE-TQEVEIKLTLEDEGLLDIEVQEETKSAYGVSYLSDMVKGLGK-ADEVT 218 (249)
T ss_dssp TCS--E-------EEEEEETTEEEEEEE-CS-SCEEEEEEETTTTSSSEEEESSCEEEEEEHHHHHHHHTTSCT-TCEEE
T ss_pred cCC--E-------EEEEEECCEEEEEEE-ec-CceEEEEEccCCCccEEEEcCCceEEEEeHHHHHHHhhhccC-CCeEE
Confidence 642 1 899999999999864 43 3333333321 11 2347899999999999999862 34688
Q ss_pred EEEeCcE-EEEEE
Q psy13360 220 LKISNNQ-IKIIF 231 (1161)
Q Consensus 220 i~~~~~~-l~f~~ 231 (1161)
+.++++. +.++.
T Consensus 219 l~~~~~~p~~i~~ 231 (249)
T 1iz5_A 219 IKFGNEMPMQMEY 231 (249)
T ss_dssp EEECTTCCEEEEE
T ss_pred EEEcCCCCEEEEE
Confidence 8887644 44543
No 54
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A* 3p83_A*
Probab=98.72 E-value=2.3e-06 Score=93.48 Aligned_cols=207 Identities=9% Similarity=0.083 Sum_probs=144.9
Q ss_pred CceEEEccHHHHHHHHHHhhccccCCCchhhhccEEEEEECCeEEEEEecceeEEEEEeeecc-cCCceEE---EEechh
Q psy13360 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGY-GNSSINI---IVAARK 76 (1161)
Q Consensus 1 Mk~~v~i~k~~L~~aL~~v~~~v~~k~~~piL~~Iliea~~~~L~ltatD~e~~i~~~i~a~~-~~~~G~v---~V~ak~ 76 (1161)
|+.++ .+-+.|.+.++.+. |++.++++++.+++|++.|||+..-..+.+.... .-++-.+ ++|++.
T Consensus 1 m~~~~-~~~~~~~~i~~~i~---------~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~i~~~~~ 70 (245)
T 1rwz_A 1 MIDVI-MTGELLKTVTRAIV---------ALVSEARIHFLEKGLHSRAVDPANVAMVIVDIPKDSFEVYNIDEEKTIGVD 70 (245)
T ss_dssp CEEEE-EEHHHHHHHHHHHH---------TTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEE
T ss_pred CeEEe-cchHHHHHHHHHHH---------HHhceEEEEEcCCeEEEEEECCCcEEEEEEEEChHhCceEEcCCCeEEEEE
Confidence 55543 35666766776665 4569999999999999999998654444444322 1122233 566766
Q ss_pred HHHHHhcCC---CCccEEEEEeCc-EEEEEECc--EEEEEccCCCCCCCCccCCC-CcceEEEEcHHHHHHHHHhhcccc
Q psy13360 77 FIDILRSLP---ETEKVTIYIENK-HMFIKSGK--SKFTLQTLDAKEYPIMTLNS-KYDFEFTLSQKTLKCILNMVYFSI 149 (1161)
Q Consensus 77 l~~Ivk~Lp---~~~~I~ie~~~~-~l~I~sG~--~~~~l~~~~~edfP~~~~~~-~~~~~~~i~~~~L~~aI~~v~~a~ 149 (1161)
+.++.|-|. +++.|++..+++ ++.+..++ ..|.+..+++ +||+++.+. +....+.++...|.++++++....
T Consensus 71 l~el~kiL~~~~~~~~v~i~~~~~~~l~~~~~~~~~~~~~rlidg-~~p~~~iP~~~~~~~v~~~~~~l~~av~r~~~ls 149 (245)
T 1rwz_A 71 MDRIFDISKSISTKDLVELIVEDESTLKVKFGSVEYKVALIDPSA-IRKEPRIPELELPAKIVMDAGEFKKAIAAADKIS 149 (245)
T ss_dssp HHHHHHHHTTSCTTSEEEEEESSSSEEEEEETTEEEEEECBCGGG-SCCCCCCCCCCCSEEEEEEHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhCCCCCEEEEEECCCCeEEEEEeeeEEEEEEEcccc-CccCCCCCCCcccEEEEEEHHHHHHHHHHHHhcC
Confidence 666666663 344699998888 99999999 8999999975 578876543 567899999999999999997664
Q ss_pred cccccccceeeEEEEEECCEEEEEEecceEEEEEEE----ecCCCCC-CcceEEEehhhHHHHHhhhcCCCCcEEEEEeC
Q psy13360 150 AQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV----NIDKKFS-SCSDIIIPRKTVFTLQRLLENKENPVELKISN 224 (1161)
Q Consensus 150 s~~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i----~~~~~~~-~~~~viIP~k~L~eL~klL~~~~~~V~i~~~~ 224 (1161)
. + |.|.++++.+++.+ ++.. ..... +.....+ ++.++....+.|.++++.++- .++|.+.+++
T Consensus 150 ~--~-------V~l~~~~~~l~ls~-~~d~-g~~~~~~~~e~~~~~~g~~~~i~Fn~~yL~d~lk~~~~-s~~V~l~~~~ 217 (245)
T 1rwz_A 150 D--Q-------VIFRSDKEGFRIEA-KGDV-DSIVFHMTETELIEFNGGEARSMFSVDYLKEFCKVAGS-GDLLTIHLGT 217 (245)
T ss_dssp S--E-------EEEEEETTEEEEEE-ECSS-CEEEEEECGGGSSEECCCCEEEEEEHHHHHHHGGGCCT-TCEEEEEECS
T ss_pred C--E-------EEEEEECCEEEEEE-EccC-cEEEEecCCCccEEEEEeeEEEEEeHHHHHHHhhhccC-CCeEEEEECC
Confidence 2 1 89999999999886 4433 33332 1111111 237899999999999999862 3468888876
Q ss_pred cE-EEEE
Q psy13360 225 NQ-IKII 230 (1161)
Q Consensus 225 ~~-l~f~ 230 (1161)
.. +.++
T Consensus 218 ~~p~~i~ 224 (245)
T 1rwz_A 218 NYPVRLV 224 (245)
T ss_dssp SSCEEEE
T ss_pred CCCEEEE
Confidence 43 4454
No 55
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A
Probab=98.72 E-value=4.5e-06 Score=92.89 Aligned_cols=197 Identities=9% Similarity=0.112 Sum_probs=144.4
Q ss_pred cHHHHHHHHHHhhccccCCCchhhhccEEEEEECCeEEEEEecceeEEEEE--eeeccc-----CCceEEEEechhHHHH
Q psy13360 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTY--TAVGYG-----NSSINIIVAARKFIDI 80 (1161)
Q Consensus 8 ~k~~L~~aL~~v~~~v~~k~~~piL~~Iliea~~~~L~ltatD~e~~i~~~--i~a~~~-----~~~G~v~V~ak~l~~I 80 (1161)
+...|.++++. ..|++.++.+++.+++|++.|||....+... ++...- +.+-.+.+|.+.|.++
T Consensus 28 ~~~~lk~ii~~---------~~~il~~v~~~~~~~gl~~vAtD~~rla~~~~~l~~~~f~~y~~~~~i~~~i~l~~l~ki 98 (276)
T 2zvv_A 28 QGSLLKKVLES---------IKDLVNDANFDCSSTGFSLQAMDSSHVALVSLLLRSEGFEHYRCDRNLSMGMNLGNMSKM 98 (276)
T ss_dssp CTHHHHHHHHH---------HTTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHH
T ss_pred ChHHHHHHHHH---------HHHHhceEEEEEECCeEEEEEECCCCEEEEEEEEChhhCcEEEcCCCEEEEEEHHHHHHH
Confidence 55566666666 3368899999999999999999976433333 332211 1234789999999999
Q ss_pred HhcCCCCccEEEEEe--CcEEEEEECc------EEEEEccCCCCCCCCccCCC-CcceEEEEcHHHHHHHHHhhcccccc
Q psy13360 81 LRSLPETEKVTIYIE--NKHMFIKSGK------SKFTLQTLDAKEYPIMTLNS-KYDFEFTLSQKTLKCILNMVYFSIAQ 151 (1161)
Q Consensus 81 vk~Lp~~~~I~ie~~--~~~l~I~sG~------~~~~l~~~~~edfP~~~~~~-~~~~~~~i~~~~L~~aI~~v~~a~s~ 151 (1161)
++.+.+++.|+|..+ ++.+.+..+. ..|.++.+++ +||++..+. +....+.++...|.++++++.....
T Consensus 99 lk~~~~~d~v~i~~~~~~~~l~~~~~~~~~~~~~~~~~rLid~-~~p~~~iP~~~~~~~i~~~~~~l~~av~r~~~~sd- 176 (276)
T 2zvv_A 99 LKCAGNDDIITIKADDGGDTVTFMFESPTQDKIADFEMKLMDI-DSEHLGIPDAEYHSIVRMPSNEFSRICKDLSSIGD- 176 (276)
T ss_dssp HHTSCTTCEEEEEECTTCSEEEEEEECTTSSCEEEEEEECCCE-ECCCCCCCCCCCSEEEEEEHHHHHHHHHHHHTTCS-
T ss_pred HhhCCCCCeEEEEEcCCCCeEEEEEEeCCCceEEEEEEEcccC-CcccCCCCCCcccEEEEEEHHHHHHHHHHHHhhCC-
Confidence 998866557999887 6799998877 8999999975 467776443 5678999999999999999976532
Q ss_pred cccccceeeEEEEEECCEEEEEEecceEEEEEEEecCC-----------CC--CCcceEEEehhhHHHHHhhhcCCCCcE
Q psy13360 152 QDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDK-----------KF--SSCSDIIIPRKTVFTLQRLLENKENPV 218 (1161)
Q Consensus 152 ~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~-----------~~--~~~~~viIP~k~L~eL~klL~~~~~~V 218 (1161)
-|.|.++++.+++.|. |. +......+.. .. .++.++....+.|.+.++.++- .++|
T Consensus 177 --------~V~i~~~~~~l~lsa~-gd-~g~~~~~l~~~~~~~~~~~~~~~~~ge~~~i~fn~~YL~d~lka~~l-s~~V 245 (276)
T 2zvv_A 177 --------TVVISVTKEGVKFSTA-GD-IGTANIVLRQNTTVDKPEDAIVIEMKEPVSLSFALRYMNSFTKATPL-SDTV 245 (276)
T ss_dssp --------EEEEEEETTEEEEEEE-ET-TEEEEEEECCCSSCCSGGGCCEEEESSCEEEEEEHHHHHHHGGGGGG-CSEE
T ss_pred --------EEEEEEeCCEEEEEEE-ee-ccEEEEEEccCCCCCCccccEEEecCCcEEEEEEHHHHHHHhccccC-CCEE
Confidence 2889999999999885 43 2333333331 11 2346899999999999999862 3468
Q ss_pred EEEEeCcE
Q psy13360 219 ELKISNNQ 226 (1161)
Q Consensus 219 ~i~~~~~~ 226 (1161)
.+.++++.
T Consensus 246 ~i~l~~~~ 253 (276)
T 2zvv_A 246 TISLSSEL 253 (276)
T ss_dssp EEEECTTS
T ss_pred EEEEcCCc
Confidence 88887654
No 56
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotr binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C*
Probab=98.70 E-value=2.2e-06 Score=93.55 Aligned_cols=202 Identities=12% Similarity=0.187 Sum_probs=139.8
Q ss_pred ccHHHHHHHHHHhhccccCCCchhhhccEEEEEECCeEEEEEecceeEEEEEeeeccc-CCceEE---EEechhHHHHHh
Q psy13360 7 TEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG-NSSINI---IVAARKFIDILR 82 (1161)
Q Consensus 7 i~k~~L~~aL~~v~~~v~~k~~~piL~~Iliea~~~~L~ltatD~e~~i~~~i~a~~~-~~~G~v---~V~ak~l~~Ivk 82 (1161)
.+-+.|.+.++.+. |++.++++++.+++|++.|||+.....+.+..... -++-.+ ++|++.+.++.|
T Consensus 6 ~~a~~~~~i~~~i~---------~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~i~~~~~l~~l~k 76 (244)
T 2ijx_A 6 DDVRVLKDIIQALA---------RLVDEAVLKFKQDSVELVALDRAHISLISVNLPREMFKEYDVNDEFKFGFNTQYLMK 76 (244)
T ss_dssp SCHHHHHHHHHHHH---------HHCSEEEEEECSSEEEEEEECTTSSEEEEEEEEGGGCSEEECSSCEEEEEEHHHHHH
T ss_pred CchHHHHHHHHHHH---------HHhceEEEEEecCeEEEEEECCCcEEEEEEEECHHhCceEEcCCCEEEEEEHHHHHH
Confidence 35556666666555 56799999999999999999987544444443221 122222 456666555555
Q ss_pred cC---CCCccEEEEEeC--cEEEEEECc--EEEEEccCCCCCCCCccCCC-CcceEEEEcHHHHHHHHHhhccccccccc
Q psy13360 83 SL---PETEKVTIYIEN--KHMFIKSGK--SKFTLQTLDAKEYPIMTLNS-KYDFEFTLSQKTLKCILNMVYFSIAQQDI 154 (1161)
Q Consensus 83 ~L---p~~~~I~ie~~~--~~l~I~sG~--~~~~l~~~~~edfP~~~~~~-~~~~~~~i~~~~L~~aI~~v~~a~s~~~t 154 (1161)
-| .+++.|++..++ +++.+..|+ ..|.++.+++ +||+++.+. +....+.++...|.++++++..... +
T Consensus 77 iL~~~~~~~~v~i~~~~~~~~l~~~~~~~~~~~~~rlidg-~~p~~~iP~~~~~~~i~i~~~~l~~a~~r~~~~s~--~- 152 (244)
T 2ijx_A 77 ILKVAKRKEAIEIASESPDSVIINIIGSTNREFNVRNLEV-SEQEIPEINLQFDISATISSDGFKSAISEVSTVTD--N- 152 (244)
T ss_dssp HHTTCCSSCEEEEEEEETTEEEEEEESSSEEEEEEECCCC-CCCCCCCCCCCCSEEEEEEHHHHHHHHHHHTTTCS--E-
T ss_pred HHhhCCCCCEEEEEecCCCCEEEEEECCEEEEEEEECCcc-CcccCCCCCCcccEEEEEEHHHHHHHHHHHHhcCC--E-
Confidence 55 334468888776 899999999 8999999985 578876443 5678999999999999999976642 1
Q ss_pred ccceeeEEEEEECCEEEEEEecceEEEEEEEecC--------CCCCCcceEEEehhhHHHHHhhhcCCCCcEEEEEeCcE
Q psy13360 155 RYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID--------KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQ 226 (1161)
Q Consensus 155 rpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~--------~~~~~~~~viIP~k~L~eL~klL~~~~~~V~i~~~~~~ 226 (1161)
|.|.++++.+++.+ ++.. .. ...+. -...++.++....+.|.++++.++- .++|.+.++++.
T Consensus 153 ------V~l~~~~~~l~ls~-~~d~-g~-~~~l~~~~~~~~~~~~ge~~~i~Fn~~yL~d~lk~~~~-s~~V~l~~~~~~ 222 (244)
T 2ijx_A 153 ------VVVEGHEDRILIKA-EGES-EV-EVEFSKDTGGLQDLEFSKESKNSYSAEYLDDVLSLTKL-SDYVKISFGNQK 222 (244)
T ss_dssp ------EEEEEETTEEEEEE-TTCT-TS-EEEEETTTTCEEEEEESSCEEEEEEHHHHHHTGGGGGG-CSEEEEEEETTE
T ss_pred ------EEEEEECCEEEEEE-EecC-ce-EEEEeCCCCccEEEEcCCceEEEEEHHHHHHHhhhccC-CCEEEEEEcCCC
Confidence 88999999999986 4432 22 22221 1112347899999999999999862 346888887654
Q ss_pred -EEEEE
Q psy13360 227 -IKIIF 231 (1161)
Q Consensus 227 -l~f~~ 231 (1161)
+.++.
T Consensus 223 p~~i~~ 228 (244)
T 2ijx_A 223 PLQLFF 228 (244)
T ss_dssp EEEEEE
T ss_pred CEEEEE
Confidence 44543
No 57
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=98.64 E-value=5.4e-06 Score=90.56 Aligned_cols=202 Identities=12% Similarity=0.095 Sum_probs=146.2
Q ss_pred ccHHHHHHHHHHhhccccCCCchhhhccEEEEEECCeEEEEEecceeEEEEE--eeecc-----cCCceE-EEEechhHH
Q psy13360 7 TEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTY--TAVGY-----GNSSIN-IIVAARKFI 78 (1161)
Q Consensus 7 i~k~~L~~aL~~v~~~v~~k~~~piL~~Iliea~~~~L~ltatD~e~~i~~~--i~a~~-----~~~~G~-v~V~ak~l~ 78 (1161)
.+-+.|.+++..++.++ .++.+++.+++|++.|+|....+... ++.+. ++.+-. +.++-+.|.
T Consensus 7 ~~a~~~k~i~~ai~~i~---------~~~~~~~~~~gl~~~A~D~~rval~~~~l~~~~F~~y~~~~~~~i~gi~l~~l~ 77 (245)
T 3fds_D 7 IDAVSFSYILRTVGDFL---------SEANFIVTKEGIRVSGIDPSRVVFLDIFLPSSYFEGFEVSQEKEIIGFKLEDVN 77 (245)
T ss_dssp SCHHHHHHHHHHHHTTC---------SEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGEEEEEESSSCEEEEEEHHHHH
T ss_pred CcHHHHHHHHHHHHHHh---------ceEEEEEcCCeEEEEEECCCCEEEEEEEEChHhCEEEEeCCccEEEEEEHHHHH
Confidence 35666777777776554 89999999999999999976554443 33221 112345 678889999
Q ss_pred HHHhcCCCCccEEEEEeCcEEEEEECcE---EEEEccCCCCCCCCccCC-CCcceEEEEcHHHHHHHHHhhccccccccc
Q psy13360 79 DILRSLPETEKVTIYIENKHMFIKSGKS---KFTLQTLDAKEYPIMTLN-SKYDFEFTLSQKTLKCILNMVYFSIAQQDI 154 (1161)
Q Consensus 79 ~Ivk~Lp~~~~I~ie~~~~~l~I~sG~~---~~~l~~~~~edfP~~~~~-~~~~~~~~i~~~~L~~aI~~v~~a~s~~~t 154 (1161)
++++...+++.|++..+++++.+..++. .|.++.++++ ||+++.+ .+....+.+++..|.++++++....
T Consensus 78 kiL~~~~~~d~v~i~~~~~~l~~~~~~~~~~~~~~rLid~~-~~~~~iP~~~~~~~v~~~s~~f~~~i~~~~~~s----- 151 (245)
T 3fds_D 78 DILKRVLKDDTLILSSNESKLTLTFDGEFTRSFELPLIQVE-STQPPSVNLEFPFKAQLLTITFADIIDELSDLG----- 151 (245)
T ss_dssp HHHTTCCTTCEEEEEECSSEEEEEEESSSEEEEEEECCCCC-CCCC----CCCSEEEEEEHHHHHHHHHHHTTTC-----
T ss_pred HHHHhcCCCCEEEEEEeCCEEEEEEecCceEEEEEEeecCC-cccCCCCCcceEEEEEEEHHHHHHHHHHHHhcC-----
Confidence 9998876665799999899999998877 8999999765 6766543 2567899999999999999997554
Q ss_pred ccceeeEEEEEECCEEEEEEecceEEEEEEEecCCC------C-CCcceEEEehhhHHHHHhhhcCCCCcEEEEEeCcE-
Q psy13360 155 RYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKK------F-SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQ- 226 (1161)
Q Consensus 155 rpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~~------~-~~~~~viIP~k~L~eL~klL~~~~~~V~i~~~~~~- 226 (1161)
+.|.|.++++.+++.|. |. +......+... . .++.......+.|.+..|.++. .++|.+.+++..
T Consensus 152 ----~~V~i~~~~~~l~~s~~-gd-~g~~~~~l~~~~~~~~~~~~e~~~~~F~~~YL~~~~ka~~~-s~~V~i~~~~~~P 224 (245)
T 3fds_D 152 ----EVLNIHSKENKLYFEVI-GD-LSTAKVELSTDNGTLLEASGADVSSSYGMEYVANTTKMRRA-SDSMELYFGSQIP 224 (245)
T ss_dssp ----SEEEEEEETTEEEEEEE-CS-SCEEEEEECTTSSSCSEEEECCCEEEEEHHHHHHGGGGGGT-CSEEEEEECTTSC
T ss_pred ----CEEEEEEeCCEEEEEEE-ec-CcEEEEEEcCCCCceEEEecceEEEEEEHHHHHHHhhhccc-CCEEEEEecCCcc
Confidence 37999999999999886 32 22233332210 0 2356889999999999999874 357888888654
Q ss_pred EEEE
Q psy13360 227 IKII 230 (1161)
Q Consensus 227 l~f~ 230 (1161)
+.++
T Consensus 225 l~l~ 228 (245)
T 3fds_D 225 LKLR 228 (245)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 3444
No 58
>3aiz_A DNA polymerase sliding clamp B; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_B*
Probab=98.63 E-value=3.1e-06 Score=92.53 Aligned_cols=189 Identities=13% Similarity=0.145 Sum_probs=136.6
Q ss_pred hhhhccEEEEEECCeEEEEEecceeEEEEEeeeccc-------CCceEEEEechhHHHHHhcCCCCccEEEEEeC--cEE
Q psy13360 29 LPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG-------NSSINIIVAARKFIDILRSLPETEKVTIYIEN--KHM 99 (1161)
Q Consensus 29 ~piL~~Iliea~~~~L~ltatD~e~~i~~~i~a~~~-------~~~G~v~V~ak~l~~Ivk~Lp~~~~I~ie~~~--~~l 99 (1161)
.|++.++++++.+++|++.|||+..-..+.+..... +.+-.+.+|.+.|.++++.+ +++.|++..++ +++
T Consensus 20 ~~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~i~~~~~l~~l~kil~~~-~~~~v~i~~~~~~~~l 98 (248)
T 3aiz_A 20 LKVTDEIILNFTEDSIFSRYLTDDKVLMVIFKIPKEYLEDYTIDKPLGIKININDLKKILGKA-KSKSATVTLEETEAGL 98 (248)
T ss_dssp TTCCSEEEEEECSSEEEEEEECTTSSEEEEEEEEGGGCEEEECSSCEEEEEEHHHHHHHHHTC-SSTTCEEEEEECSSEE
T ss_pred HHHHheEEEEEccCcEEEEEECCCCEEEEEEEECHHhCceEEcCCCeEEEEEHHHHHHHHhhc-CCCEEEEEEeCCCCeE
Confidence 367799999999999999999987544444433211 11246788888899998876 34468887765 899
Q ss_pred EEEECc------EEEEEccCCCCCCCCccCCC-CcceEEEEcHHHHHHHHHhhcccccccccccceeeEEEEEECCEEEE
Q psy13360 100 FIKSGK------SKFTLQTLDAKEYPIMTLNS-KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIA 172 (1161)
Q Consensus 100 ~I~sG~------~~~~l~~~~~edfP~~~~~~-~~~~~~~i~~~~L~~aI~~v~~a~s~~~trpiL~GV~~~~~~~~L~l 172 (1161)
.+..+. ..|.++.+++ +||+++.+. +....+.++...|.++++++...... |.|.++++.+++
T Consensus 99 ~~~~~~~~~~~~~~~~~rlidg-~~p~~~iP~~~~~~~v~~~~~~l~~av~r~~~~s~~---------V~i~~~~~~l~l 168 (248)
T 3aiz_A 99 KVTVRDEKTGTRSNIYIKGEKT-SIDQLTEPKVNLSVTFTTDGDVLKDIARDLSLVGEE---------VEISADENTVTL 168 (248)
T ss_dssp EEEEEETTTTEEEEEEEECEEE-CCCCCCCCCCCCSEEEEECHHHHHHHHHHHTTSCSE---------EEEEECSSEEEE
T ss_pred EEEEEeCCCCEEEEEEEEcccc-CcccCCCCCCCccEEEEEeHHHHHHHHHHHHhcCCE---------EEEEEeCCEEEE
Confidence 999887 8999999875 577776443 56789999999999999999766421 889999999999
Q ss_pred EEecceEEEEEEEecC-----CCC--CCcceEEEehhhHHHHHhhhcCCCCcEEEEEeCcE-EEEEE
Q psy13360 173 VSSDGHRLTYYQVNID-----KKF--SSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQ-IKIIF 231 (1161)
Q Consensus 173 vATDg~RLa~~~i~~~-----~~~--~~~~~viIP~k~L~eL~klL~~~~~~V~i~~~~~~-l~f~~ 231 (1161)
.|. +. .......+. ... .++.++....+.|.++++.++- .++|.+.++++. +.++.
T Consensus 169 s~~-~d-~g~~~~~~~~~~~~~~~~~ge~~~i~fn~~yL~d~lk~~~~-s~~V~l~~~~~~p~~i~~ 232 (248)
T 3aiz_A 169 STE-EA-GRTYKSLLKQDKPLKSLNVESPSKAVYSIEVLKDVFKVTSI-SQNVTVGFGNNIPMKIEV 232 (248)
T ss_dssp EEE-ET-TEEEEEEEEETBEESEEEESSCEEEEEEHHHHHHHHHHGGG-CSSEEEEEETTEEEEEEE
T ss_pred EEE-cc-CceEEEEEcCCCcceEEecCCceEEEEEHHHHHHHhhhccC-CCeEEEEEcCCCCEEEEE
Confidence 875 33 233333332 111 2357899999999999999862 346888887654 44543
No 59
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis}
Probab=98.62 E-value=1.2e-05 Score=88.47 Aligned_cols=204 Identities=10% Similarity=0.107 Sum_probs=146.9
Q ss_pred CceEEEcc-HHHHHHHHHHhhccccCCCchhhhccEEEEEECCeEEEEEecceeEEEEE--eeecc-----cCCceEEEE
Q psy13360 1 MQLVVNTE-KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTY--TAVGY-----GNSSINIIV 72 (1161)
Q Consensus 1 Mk~~v~i~-k~~L~~aL~~v~~~v~~k~~~piL~~Iliea~~~~L~ltatD~e~~i~~~--i~a~~-----~~~~G~v~V 72 (1161)
|.|...+. .+.|.+++..++.+ +.++.+++.+++|++.|+|....+... ++.+. ++.+-.+.+
T Consensus 1 m~f~a~~~~a~~lk~ii~ai~~i---------~~~v~~~~~~~gl~~~A~D~~rvalv~~~l~~~~F~~y~~~~~~~igi 71 (259)
T 3lx2_A 1 MTFEIVFDSAREFESLIATLEKF---------FDEAVFQVNMEGIQMRAIDPSRVVLVDLNLPEMLFSKYSVESEEAIAF 71 (259)
T ss_dssp -CEEEEESCHHHHHHHHHHHHTT---------CSEEEEEECSSEEEEEEECTTSCEEEEEEEEGGGSSEEEESSCEEEEE
T ss_pred CeEEEEECcHHHHHHHHHHHHHH---------hceEEEEEecCeEEEEEECCCCEEEEEEEEChHhcEEEEcCCCEEEEE
Confidence 66664444 55566667766654 489999999999999999976544433 44321 123457899
Q ss_pred echhHHHHHhcCCCCccEEEEEe-CcEEEEEECc---EEEEEccCCCCCCCCccCC-CCcceEEEEcHHHHHHHHHhhcc
Q psy13360 73 AARKFIDILRSLPETEKVTIYIE-NKHMFIKSGK---SKFTLQTLDAKEYPIMTLN-SKYDFEFTLSQKTLKCILNMVYF 147 (1161)
Q Consensus 73 ~ak~l~~Ivk~Lp~~~~I~ie~~-~~~l~I~sG~---~~~~l~~~~~edfP~~~~~-~~~~~~~~i~~~~L~~aI~~v~~ 147 (1161)
+.+.|.++++...+++.|+|..+ ++++.+..++ ..|.++.++++ ||+++.+ .+....+.+++..|.++++++..
T Consensus 72 ~l~~L~kiLk~~~~~d~v~i~~~~~~~l~~~~e~~~~~~~~~rLid~~-~~~~~iP~~e~~~~v~~~s~~f~~~i~~~~~ 150 (259)
T 3lx2_A 72 DLKRFLKVLKLARSRDTLVLRKGGENFLEVGLLGDENTWFKLPLIDAN-TPEIEIPSLPWTVKAVVLAGALKRAVKAAKL 150 (259)
T ss_dssp EHHHHHHHHTTCCTTCEEEEEECSSSEEEEEEESSSEEEEEEECCCCC-CCCCCCCCCCCCEEEEEEHHHHHHHHHHHHH
T ss_pred EHHHHHHHHHhcCCCCEEEEEECCCCEEEEEEecCceEEEEEEeeccC-cccCCCCCCceeEEEEEEHHHHHHHHHHHHh
Confidence 99999999999987667999854 5899999888 89999999764 5665533 35678999999999999999875
Q ss_pred cccccccccceeeEEEEEECCEEEEEEecceEEEEEEEecCC--------CCC-CcceEEEehhhHHHHHhhhcCCCCcE
Q psy13360 148 SIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDK--------KFS-SCSDIIIPRKTVFTLQRLLENKENPV 218 (1161)
Q Consensus 148 a~s~~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~--------~~~-~~~~viIP~k~L~eL~klL~~~~~~V 218 (1161)
... -|.|.++++.+++.|. |. +......+.. ... ++.......+.|.+..|.++. .++|
T Consensus 151 ~sd---------~V~i~~~~~~v~~ss~-gd-~G~~~~~l~~~~~~~~~~~~~~e~~~~~F~~~YL~~~~Ka~~~-s~~V 218 (259)
T 3lx2_A 151 VSD---------SIYFMATPEKLTFKAE-GN-DSEVRTVLTMEDPGLLDLEHKMTKAKSAYGVAYLEDILRSLAD-ADEV 218 (259)
T ss_dssp HCS---------EEEEEECSSCEEEEEE-CS-SCEEEEEECTTSTTEEEEEESSSCEEEEEEHHHHHHHHSSSCT-TSEE
T ss_pred cCC---------EEEEEEECCEEEEEEE-ec-CcEEEEEEcCCCCceEEEEecCceEEEEEEHHHHHhhhccccC-CCeE
Confidence 542 4788888888888874 21 1222323321 112 356888889999999998864 3579
Q ss_pred EEEEeCcE
Q psy13360 219 ELKISNNQ 226 (1161)
Q Consensus 219 ~i~~~~~~ 226 (1161)
.|.+++..
T Consensus 219 ~l~~~~~~ 226 (259)
T 3lx2_A 219 IIRFGFDI 226 (259)
T ss_dssp EEEECTTS
T ss_pred EEEeCCCC
Confidence 99988654
No 60
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2
Probab=98.58 E-value=2.2e-06 Score=93.61 Aligned_cols=201 Identities=13% Similarity=0.182 Sum_probs=136.7
Q ss_pred cHHHHHHHHHHhhccccCCCchhhhccEEEEEECCeEEEEEecceeEEEEEeeeccc-CCceEE---EEechhHHHHHhc
Q psy13360 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG-NSSINI---IVAARKFIDILRS 83 (1161)
Q Consensus 8 ~k~~L~~aL~~v~~~v~~k~~~piL~~Iliea~~~~L~ltatD~e~~i~~~i~a~~~-~~~G~v---~V~ak~l~~Ivk~ 83 (1161)
+-+.|.++++.+. |++.++++++.+++|++.|||+.....+.+..... -++-.+ ++|++.+.++.|-
T Consensus 7 ~~~~~k~i~~~i~---------~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~i~~~~~l~~l~ki 77 (245)
T 1ud9_A 7 DVRDLKAIIQALL---------KLVDEALFDIKPEGIQLVAIDKAHISLIKIELPKEMFKEYDVPEEFKFGFNTQYMSKL 77 (245)
T ss_dssp CHHHHHHHHHHHH---------HHCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEECSSCEEEEEEHHHHHHH
T ss_pred chHHHHHHHHHHH---------HHhceEEEEEcCCeEEEEEECCCcEEEEEEEEChHhCeEEEcCCCeEEEEEHHHHHHH
Confidence 4455555565554 56799999999999999999987544444443221 122222 4455555555555
Q ss_pred C---CCCccEEEEEeCc--EEEEEECc--EEEEEccCCCCCCCCccCCC-CcceEEEEcHHHHHHHHHhhcccccccccc
Q psy13360 84 L---PETEKVTIYIENK--HMFIKSGK--SKFTLQTLDAKEYPIMTLNS-KYDFEFTLSQKTLKCILNMVYFSIAQQDIR 155 (1161)
Q Consensus 84 L---p~~~~I~ie~~~~--~l~I~sG~--~~~~l~~~~~edfP~~~~~~-~~~~~~~i~~~~L~~aI~~v~~a~s~~~tr 155 (1161)
| .+++.|++..+++ ++.+..|+ ..|.++.+++ +||+++.+. +....+.++...|.++++++..... +
T Consensus 78 L~~~~~~~~v~i~~~~~~~~l~~~~~~~~~~~~~rlidg-~~p~~~ip~~~~~~~i~i~~~~l~~a~~r~~~~s~--~-- 152 (245)
T 1ud9_A 78 LKAAKRKEEIIIDADSPEVVKLTLSGALNRVFNVNNIEV-LPPEVPEVNLEFDIKATINASGLKNAIGEIAEVAD--T-- 152 (245)
T ss_dssp HTTCCSCCCEEEEEEETTEEEEEECSSSCEEEEEECCCC-CCCCCC---CCCSEEEEEEHHHHHHHHHHHHHHCS--E--
T ss_pred HhcCCCCCEEEEEEcCCCCEEEEEECCEEEEEEEECccc-CcccCCCCCCCccEEEEEeHHHHHHHHHHHHhcCC--E--
Confidence 5 3344699988766 99999999 9999999985 578876443 5678999999999999999976642 1
Q ss_pred cceeeEEEEEECCEEEEEEecceEEEEEEEecC--------CCCCCcceEEEehhhHHHHHhhhcCCCCcEEEEEeCcE-
Q psy13360 156 YYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNID--------KKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQ- 226 (1161)
Q Consensus 156 piL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~--------~~~~~~~~viIP~k~L~eL~klL~~~~~~V~i~~~~~~- 226 (1161)
|.|.++++.+++.+ ++.. .. ...+. -...++.++....+.|.++++.++- .++|.+.++++.
T Consensus 153 -----V~l~~~~~~l~ls~-~~d~-g~-~~~l~~~~~~~~~~~~ge~~~i~Fn~~yL~d~lk~~~~-s~~V~l~~~~~~p 223 (245)
T 1ud9_A 153 -----LLISGNEEKVVVKG-EGEN-KV-EVEFSKDTGSLADIEFNKESSSAYDVEYLNDIISLTKL-SDYVKVAFADQKP 223 (245)
T ss_dssp -----EEEEECSSEEEEEE-SSSS-CC-CEEEEGGGTCEEEEEESSCEEEEEEHHHHHHTGGGGGG-CSEEEEEECTTSC
T ss_pred -----EEEEEECCEEEEEE-EccC-ce-EEEEecCCCccEEEEeCCceeEEEEHHHHHHHhhhccc-CCEEEEEEcCCCC
Confidence 88999999999986 4432 22 22221 1112347899999999999999862 346888887543
Q ss_pred EEEEE
Q psy13360 227 IKIIF 231 (1161)
Q Consensus 227 l~f~~ 231 (1161)
+.++.
T Consensus 224 ~~i~~ 228 (245)
T 1ud9_A 224 MQLEF 228 (245)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44543
No 61
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity; 2.30A {Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2 PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3v60_B 3v61_B 3v62_B* 3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3pge_B 3l0x_B
Probab=98.54 E-value=4.4e-05 Score=83.83 Aligned_cols=202 Identities=14% Similarity=0.186 Sum_probs=144.7
Q ss_pred cHHHHHHHHHHhhccccCCCchhhhccEEEEEECCeEEEEEecceeEEEEEe--eecc-----cCCceEEEEechhHHHH
Q psy13360 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYT--AVGY-----GNSSINIIVAARKFIDI 80 (1161)
Q Consensus 8 ~k~~L~~aL~~v~~~v~~k~~~piL~~Iliea~~~~L~ltatD~e~~i~~~i--~a~~-----~~~~G~v~V~ak~l~~I 80 (1161)
+-+.|.+.++.+. |++.++.+++.+++|++.|+|+...+...+ +... ++.+-.+.++.+.|.++
T Consensus 8 ~~~~~~~i~~~i~---------~i~~~v~~~~~~~gl~~~a~D~~rla~~~~~l~~~~F~~y~~~~~~~~~i~l~~l~ki 78 (258)
T 1plq_A 8 EASLFKRIIDGFK---------DCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKI 78 (258)
T ss_dssp SHHHHHHHHHHHT---------TTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEECCSSCEEEEEEHHHHHHH
T ss_pred chHHHHHHHHHHH---------HHhceEEEEEcCCceEEEEECCCcEEEEEEEECHHhCcEEEeCCCeEEEEEHHHHHHH
Confidence 4555666666555 456899999999999999999764443333 3221 11234789999999999
Q ss_pred HhcCCCCccEEEEEeC--cEEEEEECc------EEEEEccCCCCCCCCccCCC-CcceEEEEcHHHHHHHHHhhcccccc
Q psy13360 81 LRSLPETEKVTIYIEN--KHMFIKSGK------SKFTLQTLDAKEYPIMTLNS-KYDFEFTLSQKTLKCILNMVYFSIAQ 151 (1161)
Q Consensus 81 vk~Lp~~~~I~ie~~~--~~l~I~sG~------~~~~l~~~~~edfP~~~~~~-~~~~~~~i~~~~L~~aI~~v~~a~s~ 151 (1161)
++.+.+++.|+|..++ +.+.+..+. ..|.++.+++ +||+++.++ +....+.+++..|.++++++.... .
T Consensus 79 l~~~~~~d~v~i~~~~~~~~l~~~~~~~~~~~~~~~~~rlie~-~~~~~~ip~~~~~~~i~~~~~~l~~av~r~~~~s-~ 156 (258)
T 1plq_A 79 LRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDI-DADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLS-D 156 (258)
T ss_dssp TTCSTTTSEEEEEECSSCSEEEEEEECSSSSCEEEEEEECBCC-CCCCCCCCCSCCSEEEEEEHHHHHHHHHHHHTTC-S
T ss_pred HhcCCCCCEEEEEecCCCCeEEEEEEcCCCCeEEEEEEEcccC-CcccCCCCCCCccEEEEEeHHHHHHHHHHHHhcC-C
Confidence 9988655579998865 799988877 8999999985 467775443 567899999999999999997653 2
Q ss_pred cccccceeeEEEEEECCEEEEEEecceEEEEEEEecCC-----------CC--CCcceEEEehhhHHHHHhhhcCCCCcE
Q psy13360 152 QDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDK-----------KF--SSCSDIIIPRKTVFTLQRLLENKENPV 218 (1161)
Q Consensus 152 ~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~-----------~~--~~~~~viIP~k~L~eL~klL~~~~~~V 218 (1161)
-|.|.++++.+++.|. | -+......+.. .. .++.++....+.|.+.++.++- .+.|
T Consensus 157 --------~v~i~~~~~~l~ls~~-~-d~g~~~~~l~~~~~~~~~~~~~~~~~ge~~~i~f~~~yL~~~lka~~~-s~~V 225 (258)
T 1plq_A 157 --------SINIMITKETIKFVAD-G-DIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSL-SDRV 225 (258)
T ss_dssp --------EEEEEEETTEEEEEEE-C-SSCEEEEEECCBCCTTCGGGCBEEEESSCEEEEEEHHHHHHHGGGGGT-CSEE
T ss_pred --------EEEEEEECCEEEEEEE-c-cCceEEEEEecCCCCCCCccceEEecCCcEEEEEEHHHHHHHhccccC-CceE
Confidence 2889999999998884 4 23333333321 11 2346899999999999999863 3468
Q ss_pred EEEEeCcE-EEEEE
Q psy13360 219 ELKISNNQ-IKIIF 231 (1161)
Q Consensus 219 ~i~~~~~~-l~f~~ 231 (1161)
.+.+++.. +.++.
T Consensus 226 ~i~~~~~~Pl~l~~ 239 (258)
T 1plq_A 226 GIRLSSEAPALFQF 239 (258)
T ss_dssp EEEECSSSCEEEEE
T ss_pred EEEECCCCCEEEEE
Confidence 88887654 44444
No 62
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A* 3p87_A 3vkx_A*
Probab=98.49 E-value=6.7e-05 Score=82.47 Aligned_cols=201 Identities=10% Similarity=0.121 Sum_probs=144.6
Q ss_pred cHHHHHHHHHHhhccccCCCchhhhccEEEEEECCeEEEEEecceeEEEEEe--eeccc-----CCceEEEEechhHHHH
Q psy13360 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYT--AVGYG-----NSSINIIVAARKFIDI 80 (1161)
Q Consensus 8 ~k~~L~~aL~~v~~~v~~k~~~piL~~Iliea~~~~L~ltatD~e~~i~~~i--~a~~~-----~~~G~v~V~ak~l~~I 80 (1161)
+-+.|.+.++.+.. ++.++++++.+++|++.|+|....+...+ +...- +.+-.+.+|.+.|.++
T Consensus 8 ~~~~~k~i~~~i~~---------il~~v~~~~~~~gl~~~a~D~~rla~~~~~l~~~~f~~y~~~~~i~~~i~l~~l~ki 78 (261)
T 1u7b_A 8 QGSILKKVLEALKD---------LINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKI 78 (261)
T ss_dssp CTHHHHHHHHHHHT---------TCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHH
T ss_pred chHHHHHHHHHHHH---------HhcEEEEEEeCCceEEEEECCCCEEEEEEEECHHhCeEEEeCCCeEEEEEHHHHHHH
Confidence 45566666666654 56999999999999999999764443333 32211 1234789999999999
Q ss_pred HhcCCCCccEEEEEe--CcEEEEEECc------EEEEEccCCCCCCCCccCCC-CcceEEEEcHHHHHHHHHhhcccccc
Q psy13360 81 LRSLPETEKVTIYIE--NKHMFIKSGK------SKFTLQTLDAKEYPIMTLNS-KYDFEFTLSQKTLKCILNMVYFSIAQ 151 (1161)
Q Consensus 81 vk~Lp~~~~I~ie~~--~~~l~I~sG~------~~~~l~~~~~edfP~~~~~~-~~~~~~~i~~~~L~~aI~~v~~a~s~ 151 (1161)
++.+.+++.|+|..+ ++.+.+..+. ..|.++.+++ +||+++.+. +....+.+++..|.++++++.....
T Consensus 79 l~~~~~~d~v~i~~~~~~~~l~~~~~~~~~~~~~~~~~rlie~-~~~~~~iP~~~~~~~i~~~~~~l~~ai~r~~~~s~- 156 (261)
T 1u7b_A 79 LKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDL-DVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGD- 156 (261)
T ss_dssp HTTSCTTCEEEEEECTTCSEEEEEEECTTSSCEEEEEEECCCC-CCCCCBCCCCCCSEEEEEEHHHHHHHHHHHHTTCS-
T ss_pred HhcCCCCCEEEEEecCCCCEEEEEEEcCCCCeEEEEEEECccC-CcccCCCCCCcccEEEEEEHHHHHHHHHHHHhcCC-
Confidence 998865556999886 6799998877 8999999985 467775432 5678999999999999999976532
Q ss_pred cccccceeeEEEEEECCEEEEEEecceEEEEEEEecCC-----------CC--CCcceEEEehhhHHHHHhhhcCCCCcE
Q psy13360 152 QDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDK-----------KF--SSCSDIIIPRKTVFTLQRLLENKENPV 218 (1161)
Q Consensus 152 ~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~-----------~~--~~~~~viIP~k~L~eL~klL~~~~~~V 218 (1161)
-|.|.++++.+++.|. |.. ......+.. .. .++.++....+.|.+.++.++- .+.|
T Consensus 157 --------~v~i~~~~~~l~ls~~-~d~-g~~~~~~~~~~~~~~~~~~~~~~~~e~~~i~f~~~yL~~~lka~~~-s~~V 225 (261)
T 1u7b_A 157 --------AVVISCAKDGVKFSAS-GEL-GNGNIKLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPL-SSTV 225 (261)
T ss_dssp --------EEEEEEETTEEEEEEE-ETT-EEEEEEECCCC----CCSCCEEEESSCEEEEEEHHHHHHHGGGGGG-CSEE
T ss_pred --------EEEEEEECCEEEEEEE-ecC-ceEEEEEecCCCCCCCccceEEecCCcEEEEEeHHHHHHHhCcccC-CCeE
Confidence 1889999999998885 432 222333321 01 2346899999999999999862 3468
Q ss_pred EEEEeCcE-EEEE
Q psy13360 219 ELKISNNQ-IKII 230 (1161)
Q Consensus 219 ~i~~~~~~-l~f~ 230 (1161)
.+.++++. +.++
T Consensus 226 ~i~~~~~~P~~l~ 238 (261)
T 1u7b_A 226 TLSMSADVPLVVE 238 (261)
T ss_dssp EEEECTTSCEEEE
T ss_pred EEEECCCCCEEEE
Confidence 88887654 4444
No 63
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=98.47 E-value=2.3e-07 Score=100.82 Aligned_cols=144 Identities=21% Similarity=0.233 Sum_probs=94.6
Q ss_pred chhHHhHHHhhHhhhc------------C--CCCCeEEEEEecC-CcEEEEECCCccccccccCCCCCCCCcceEEEEee
Q psy13360 379 HHFVFEILDNAIDESL------------A--GYCTKINVTIYSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTE 443 (1161)
Q Consensus 379 ~hlv~EivdNsiDe~~------------~--g~~~~I~V~i~~d-gsisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t~ 443 (1161)
...|+|+|.||+|..- . +....|.|.++.+ ..|+|.|||.||+-+..+. .|+.
T Consensus 49 ~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~~~i~I~DnG~GMs~edl~~------------~~~~ 116 (235)
T 2ior_A 49 EIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVID------------HLGT 116 (235)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTTEEEEEECSSCCCHHHHHH------------HHTT
T ss_pred HHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCceEEEEEECCCCCCHHHHHH------------HHHH
Confidence 5789999999999862 1 2224577777765 4799999999999776543 3444
Q ss_pred ecccCC--CCC------CceeeecccccchhhHhhhhccEEEEEEEeCCE----EEEEEEEcCccccccccccCCccccC
Q psy13360 444 LHAGGK--FNK------NSYKISGGLHGIGLSCVNGLSRFLQLTINRNKK----IHYMEFRYGVLQNRIIKTINGISVSP 511 (1161)
Q Consensus 444 l~ag~k--fd~------~~yk~sgGlhGvG~svvNalS~~~~V~v~r~g~----~~~q~f~~G~~~~~~~~~~~~~~~~~ 511 (1161)
..++++ |.+ ..-...-|..|+|...+-++++.++|.++..+. .|...+..+ ... .
T Consensus 117 ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~------------~~~-~ 183 (235)
T 2ior_A 117 IAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGE------------GEY-T 183 (235)
T ss_dssp CCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSS------------SEE-E
T ss_pred HccccccchhhhhccccccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCC------------CcE-E
Confidence 444432 210 011245689999998888899999999987654 455555444 111 0
Q ss_pred cEEeccCCCCCcEEEEE--eCccccccCCCCHHHHHHHHHhhh
Q psy13360 512 IKIIGDTNKQGTKIHFW--VDEKIFSNIEFHYEILKKRIRELS 552 (1161)
Q Consensus 512 ~~~~g~~~~~GT~V~F~--PD~~iF~~~~~~~~~l~~Rl~elA 552 (1161)
+... ....+||+|+.. |+..-| ++...+.+.++.+|
T Consensus 184 i~~~-~~~~~GT~V~v~Lk~~~~~~----~e~~~i~~lv~~ya 221 (235)
T 2ior_A 184 VADI-TKEDRGTEITLHLREGEDEF----LDDWRVRSIISKYS 221 (235)
T ss_dssp EEEE-CCCSCEEEEEEEECTTCGGG----GCHHHHHHHHHHHT
T ss_pred EeeC-CCCCCCEEEEEEEcCchhhh----CCHHHHHHHHHHHh
Confidence 1111 234689999875 332222 56788999999998
No 64
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=98.47 E-value=2.6e-07 Score=99.49 Aligned_cols=159 Identities=20% Similarity=0.238 Sum_probs=101.2
Q ss_pred ccchhHHhHHHhhHhhhcC-------C-------CCCeEEEEEecC-CcEEEEECCCccccccccCCCCCCCCcceEEEE
Q psy13360 377 GLHHFVFEILDNAIDESLA-------G-------YCTKINVTIYSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVM 441 (1161)
Q Consensus 377 gl~hlv~EivdNsiDe~~~-------g-------~~~~I~V~i~~d-gsisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~ 441 (1161)
+-...++|+|.||+|..-. + ..-.|.|..+.+ ..|+|.|||.||+-+.... .|
T Consensus 32 ~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~DnG~GMs~edl~~------------~l 99 (228)
T 3t0h_A 32 NKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLIN------------NL 99 (228)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHT------------GG
T ss_pred CcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEeCCCCCCHHHHHH------------HH
Confidence 3478899999999998631 1 122455555543 4799999999999876654 23
Q ss_pred eeecccCC--CCC----CceeeecccccchhhHhhhhccEEEEEEEeCC-EEEEEEEEcCccccccccccCCccccCcEE
Q psy13360 442 TELHAGGK--FNK----NSYKISGGLHGIGLSCVNGLSRFLQLTINRNK-KIHYMEFRYGVLQNRIIKTINGISVSPIKI 514 (1161)
Q Consensus 442 t~l~ag~k--fd~----~~yk~sgGlhGvG~svvNalS~~~~V~v~r~g-~~~~q~f~~G~~~~~~~~~~~~~~~~~~~~ 514 (1161)
++..++++ |.+ +.-..+-|..|+|...+-++|++++|.++.++ .-|..++..| ... .+..
T Consensus 100 ~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~~~~~~w~~~g~------------~~~-~v~~ 166 (228)
T 3t0h_A 100 GTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAG------------GSF-TVRT 166 (228)
T ss_dssp GSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECST------------TEE-EEEE
T ss_pred HhhccccchhhhhhhcccCCcccCCCCChhHHHHhccCCEEEEEEecCCCCcEEEEEcCC------------ceE-EEee
Confidence 33333332 211 12245789999999999999999999998755 4466666655 111 1111
Q ss_pred e-ccCCCCCcEEEEEeCccccccCC-CCHHHHHHHHHhhh--ccCCCcEEEEeecc
Q psy13360 515 I-GDTNKQGTKIHFWVDEKIFSNIE-FHYEILKKRIRELS--FLNNGVCITLIDER 566 (1161)
Q Consensus 515 ~-g~~~~~GT~V~F~PD~~iF~~~~-~~~~~l~~Rl~elA--~lnpgl~i~l~d~r 566 (1161)
. +....+||+|+...-..- .+ .+...|..-++.+| .-+| |++..++
T Consensus 167 ~~~~~~~~GT~I~v~Lk~~~---~E~~e~~~i~~iv~~~a~~l~~P---i~~~~~~ 216 (228)
T 3t0h_A 167 DTGEPMGRGTKVILHLKEDQ---TEYLEERRIKEIVKKHSQFIGYP---ITLFVEK 216 (228)
T ss_dssp CCSSCCSSEEEEEEEECGGG---GGGGSHHHHHHHHHHHSTTCSSC---EEECCC-
T ss_pred cCCCCCCCCcEEEEEECCch---hhhhhHHHHHHHHHHHHhhCCCC---eEEeecc
Confidence 1 223578999998722211 12 35678888888888 4455 6665543
No 65
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=98.46 E-value=5.3e-07 Score=97.02 Aligned_cols=162 Identities=18% Similarity=0.185 Sum_probs=99.5
Q ss_pred ccchhHHhHHHhhHhhhcC------------CCCC--eEEEEEecC-CcEEEEECCCccccccccCCCCCCCCcceEEEE
Q psy13360 377 GLHHFVFEILDNAIDESLA------------GYCT--KINVTIYSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVM 441 (1161)
Q Consensus 377 gl~hlv~EivdNsiDe~~~------------g~~~--~I~V~i~~d-gsisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~ 441 (1161)
+-.+.++|+|.||+|..-. +... .|.|.++.+ ..|+|.|||.||+-+..+. .|
T Consensus 26 ~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~~~i~I~DnG~GMs~edl~~------------~l 93 (220)
T 2wer_A 26 NKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELIN------------NL 93 (220)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSCCCCHHHHHH------------HT
T ss_pred CchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCCCEEEEEEcCCCCCHHHHHH------------HH
Confidence 3468999999999998641 1123 466666543 4799999999999776543 23
Q ss_pred eeecccCC------CCCCceeeecccccchhhHhhhhccEEEEEEEeCC-EEEEEEEEcCccccccccccCCccccCcEE
Q psy13360 442 TELHAGGK------FNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNK-KIHYMEFRYGVLQNRIIKTINGISVSPIKI 514 (1161)
Q Consensus 442 t~l~ag~k------fd~~~yk~sgGlhGvG~svvNalS~~~~V~v~r~g-~~~~q~f~~G~~~~~~~~~~~~~~~~~~~~ 514 (1161)
+.+..+++ .....-...-|..|+|...+-++++.++|.++..| ..|...+..| ... .+..
T Consensus 94 ~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~~~~~~~~~~~~------------~~~-~i~~ 160 (220)
T 2wer_A 94 GTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAG------------GSF-TVTL 160 (220)
T ss_dssp TTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSS------------SEE-EEEE
T ss_pred HhHhcccchhHHHHhhccCCcccCCccchhHHHhhhcCCeeEEEEecCCCceeEEEeCCC------------Cce-Eeec
Confidence 32322321 11112234678899999999999999999998754 2355555444 110 1111
Q ss_pred e--ccCCCCCcEEEEEeCccccccCCCCHHHHHHHHHhhhccCCCcEEEEeecc
Q psy13360 515 I--GDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDER 566 (1161)
Q Consensus 515 ~--g~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~Rl~elA~lnpgl~i~l~d~r 566 (1161)
. +....+||+|+....... ..-++...+.+.++.+|-.. ..-|+++.++
T Consensus 161 ~~~~~~~~~GT~I~l~Lk~~~--~~~~e~~~i~~~v~~~a~~l-~~PI~~~~~~ 211 (220)
T 2wer_A 161 DEVNERIGRGTILRLFLKDDQ--LEYLEEKRIKEVIKRHSEFV-AYPIQLVVTK 211 (220)
T ss_dssp CSSSCCCSSEEEEEEEECTTC--GGGGCHHHHHHHHHHHCTTC-CSCEEECCCC
T ss_pred ccCCCCCCCCeEEEEEECcch--HHhCCHHHHHHHHHHHHhcC-CCceEEEecc
Confidence 1 123468999998732211 01146778888888888322 3457777665
No 66
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C*
Probab=98.37 E-value=2.8e-05 Score=85.15 Aligned_cols=192 Identities=14% Similarity=0.191 Sum_probs=146.5
Q ss_pred EE-cHHHHHHHHHhhcccccccccccceeeEEEEEECCEEEEEEecceEEEEEEEecCCC------CCCcceEEEehhhH
Q psy13360 132 TL-SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKK------FSSCSDIIIPRKTV 204 (1161)
Q Consensus 132 ~i-~~~~L~~aI~~v~~a~s~~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~~------~~~~~~viIP~k~L 204 (1161)
.+ ++..|+++++.+... ..-+.|+++++++.+.|.|..+.+...+.++.. .+.+..+-|+-..+
T Consensus 5 ~~~~a~~lk~ii~ai~~l---------v~e~~~~~~~~Gi~l~amD~s~valv~l~l~~~~F~~Y~~d~~~~~gvnl~~l 75 (249)
T 3fds_C 5 VYPNAKDFFSFINSITNV---------TDSIILNFTEDGIFSRHLTEDKVLMAIMRIPKDVLSEYSIDSPTSVKLDVSSV 75 (249)
T ss_dssp EESCHHHHHHHHHHHTTT---------CSSEEEEECSSEEEEEEECTTSSEEEEEEEEGGGSSEEECSSCEEEEECHHHH
T ss_pred EeCchHHHHHHHHHHHHH---------hCeEEEEEcCCeEEEEEECCCcEEEEEEEECHHhCeEEECCCCeEEEEEHHHH
Confidence 44 577888888777543 345899999999999999999999988877653 23456799999999
Q ss_pred HHHHhhhc-CCCCcEEEEEeCcEEEEEECc------EEEEEeecCCCCCCccccccC-CcceEEEEeHHHHHHHHHHhhc
Q psy13360 205 FTLQRLLE-NKENPVELKISNNQIKIIFSN------IEIISKLIDGKFLDYKYVISN-KYEKSFLVNRNKLLRSLQRISI 276 (1161)
Q Consensus 205 ~eL~klL~-~~~~~V~i~~~~~~l~f~~~~------~~~~~rli~g~fPdy~~vip~-~~~~~i~v~r~~L~~aL~Rv~~ 276 (1161)
..+++... ++ +.+.+.-+++.+.|.+.+ ..|..++++.+.+++. +|. +++..+.++..+|.++++.+..
T Consensus 76 ~kiLk~~~~~~-d~l~~~~~~~~l~i~~e~~~~~~~~~~~l~l~d~~~e~~~--~p~~e~~~~v~m~s~~f~~~~~dl~~ 152 (249)
T 3fds_C 76 KKILSKASSKK-ATIELTETDSGLKIIIRDEKSGAKSTIYIKAEKGQVEQLT--EPKVNLAVNFTTDESVLNVIAADVTL 152 (249)
T ss_dssp HHHHTTCCCSC-EEEEEEECSSEEEEEEEETTTCCEEEEEEECEECCCCCCC--CCCCCCCEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCC-CEEEEecCCCEEEEEEEeCCCCEEEEEEEECCCCccccCC--CCCCcceEEEEEEHHHHHHHHHHHHH
Confidence 99999987 53 367777677887766632 6788999998776665 344 7899999999999999999999
Q ss_pred cccCCcceEEEEEeCCEEEEEEEcCCccccceeee-----eeee-CCccceeeechhhhh--hc-cc-Ccccccc
Q psy13360 277 ISNDKLKGVRLVIKPNYLKITVSSSNREKASEELE-----INYN-GKDKNFIKFLIKIML--LK-NK-NSYDIQD 341 (1161)
Q Consensus 277 ~s~~~~~~V~l~~~~~~L~isa~d~~~g~~~E~i~-----~~~~-Ge~~~ii~fn~~yLl--L~-~~-~~d~i~l 341 (1161)
+++ .|.+..+++++.+++.+ +.|.++..++ +.++ +++.. ..|..+||. .+ .. -++.|++
T Consensus 153 ~sd----~v~i~~~~~~~~f~~~g-d~~~~~~~~~~~~~l~~~~~~~~~~-~~fsl~yL~~~~K~a~~ls~~V~i 221 (249)
T 3fds_C 153 VGE----EMRISTEEDKIKIEAGE-EGKRYVAFLMKDKPLKELSIDTSAS-SSYSAEMFKDAVKGLRGFSAPTMV 221 (249)
T ss_dssp HCS----EEEEEEETTEEEEEEEE-TTEEEEEEEEETBEESEEEESSCCE-EEEEHHHHHHHHHTTTTCCSCEEE
T ss_pred hCC----EEEEEEECCEEEEEEEe-cCcEEEEEEcCCCCcEEEEcCCceE-EEEEHHHHHHHHhhhcccCCEEEE
Confidence 964 38899999999998766 5565544442 2333 56777 899999987 77 55 3466666
No 67
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=98.36 E-value=6.8e-07 Score=97.37 Aligned_cols=158 Identities=20% Similarity=0.242 Sum_probs=101.2
Q ss_pred cchhHHhHHHhhHhhhcC--------------CCCCeEEEEEecC-CcEEEEECCCccccccccCCCCCCCCcceEEEEe
Q psy13360 378 LHHFVFEILDNAIDESLA--------------GYCTKINVTIYSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMT 442 (1161)
Q Consensus 378 l~hlv~EivdNsiDe~~~--------------g~~~~I~V~i~~d-gsisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t 442 (1161)
-...++|+|.||.|..-. +..-.|.|..+.+ ..|+|.|||.||+-+.... .|+
T Consensus 61 ~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnG~GMt~edl~~------------~l~ 128 (256)
T 3o0i_A 61 KEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLIN------------NLG 128 (256)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHT------------HHH
T ss_pred cHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCceEEEEecCCCCcCHHHHHH------------HHH
Confidence 367899999999998631 1122566666653 5799999999999876644 233
Q ss_pred eecccCC--CCC----CceeeecccccchhhHhhhhccEEEEEEEeCC-EEEEEEEEcCccccccccccCCccccCcEEe
Q psy13360 443 ELHAGGK--FNK----NSYKISGGLHGIGLSCVNGLSRFLQLTINRNK-KIHYMEFRYGVLQNRIIKTINGISVSPIKII 515 (1161)
Q Consensus 443 ~l~ag~k--fd~----~~yk~sgGlhGvG~svvNalS~~~~V~v~r~g-~~~~q~f~~G~~~~~~~~~~~~~~~~~~~~~ 515 (1161)
...++++ |.+ +.-..+-|+.|+|...+-++|++++|.++.++ .-|......| ... .+...
T Consensus 129 ~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~~~g~~w~s~gg------------~~~-~v~~~ 195 (256)
T 3o0i_A 129 TIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAG------------GSF-TVRTD 195 (256)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECST------------TEE-EEEEC
T ss_pred hhccccccchhhhhcccCCccccCCCcchHHHhhccCCeEEEEEcCCCCceEEEEEecc------------ceE-EEeeC
Confidence 3323222 211 12245789999999999999999999998754 4466666555 111 11111
Q ss_pred -ccCCCCCcEEEEEeCccccccCC-CCHHHHHHHHHhhh--ccCCCcEEEEeecc
Q psy13360 516 -GDTNKQGTKIHFWVDEKIFSNIE-FHYEILKKRIRELS--FLNNGVCITLIDER 566 (1161)
Q Consensus 516 -g~~~~~GT~V~F~PD~~iF~~~~-~~~~~l~~Rl~elA--~lnpgl~i~l~d~r 566 (1161)
+....+||+|+...- +...+ .+...|..-++.+| .-+| |++..++
T Consensus 196 ~~~~~~~GT~I~l~LK---~~~~e~~e~~~I~~iv~k~s~~l~~P---I~~~~~~ 244 (256)
T 3o0i_A 196 TGEPMGRGTKVILHLK---EDQTEYLEERRIKEIVKKHSQFIGYP---ITLFVEK 244 (256)
T ss_dssp CSSCCSSEEEEEEEEC---GGGGGGGCHHHHHHHHHHHCTTCSSC---EEECCC-
T ss_pred CCCCCCCCcEEEEEEc---CcchhhccHHHHHHHHHHHHhhCCCC---eEEeeee
Confidence 233578999998722 22223 36678888899988 4455 6665544
No 68
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica}
Probab=98.36 E-value=0.00012 Score=80.97 Aligned_cols=198 Identities=11% Similarity=0.101 Sum_probs=140.4
Q ss_pred cHHHHHHHHHHhhccccCCCchhhhccEEEEEECCeEEEEEecceeEEEE--Eeeecc-----cCCceEEEEechhHHHH
Q psy13360 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITT--YTAVGY-----GNSSINIIVAARKFIDI 80 (1161)
Q Consensus 8 ~k~~L~~aL~~v~~~v~~k~~~piL~~Iliea~~~~L~ltatD~e~~i~~--~i~a~~-----~~~~G~v~V~ak~l~~I 80 (1161)
+-..|.+++..++ |++.++.+++.+++|++.|+|....+.. .++... ++.+-.+.++.+.|.++
T Consensus 13 ~a~~lk~ii~ai~---------~i~~~v~~~~~~~gl~~~A~D~~rvalv~~~l~~~~F~~y~~d~~~~igi~l~~L~ki 83 (265)
T 3p91_A 13 EAALFKRVVESLK---------STIDKTNFDCSDAGIAVQCMDNSHVSLVSLLIETDAFDEFQCLKPITLGINLTHLSKI 83 (265)
T ss_dssp CHHHHHHHHHHHH---------TTCSEEEEEEETTEEEEEEECTTSSSEEEEEECGGGEEEEECSSCEEEEEEHHHHHHH
T ss_pred chHHHHHHHHHHH---------HHhceEEEEEeCCeEEEEEECCCcEEEEEEEEChhhceEEEeCCCeEEEEEHHHHHHH
Confidence 4555666666655 4668999999999999999997644433 344321 12345789999999999
Q ss_pred HhcCCCCccEEEEEeC--cEEEEEECc-----EEEEEccCCCCCCCCccCC-CCcceEEEEcHHHHHHHHHhhccccccc
Q psy13360 81 LRSLPETEKVTIYIEN--KHMFIKSGK-----SKFTLQTLDAKEYPIMTLN-SKYDFEFTLSQKTLKCILNMVYFSIAQQ 152 (1161)
Q Consensus 81 vk~Lp~~~~I~ie~~~--~~l~I~sG~-----~~~~l~~~~~edfP~~~~~-~~~~~~~~i~~~~L~~aI~~v~~a~s~~ 152 (1161)
+|....++.|+|..++ +++.+..+. ..|.++.++++ ||++..+ .+....+.+++..|.++++.+.....
T Consensus 84 Lk~~~~~d~v~i~~~~~~~~l~~~~e~~~~~~i~~~lrLid~~-~~~~~iP~~e~~~~v~~~s~~f~~~i~~~~~~s~-- 160 (265)
T 3p91_A 84 LKALDNDCGLILDVKKVDDAVLSITSEGTNKTMKFGLNLVDIE-AESVEIPELQSDAIITLSSAEFLKITKDFSALGD-- 160 (265)
T ss_dssp HTTSCTTSEEEEEECSSSSEEEEEEEC--CCEEEEEEECCCCC-CCCCCCCCCCCSEEEEEEHHHHHHHHHHHHHHCC--
T ss_pred HhhcCCCCEEEEEEcCCCCeEEEEEEeCCCceEEEEEEecccC-cccCCCCCCCccEEEEEEHHHHHHHHHHHHhCCC--
Confidence 9998766689998864 488887655 38999999774 5654432 35678999999999999999865442
Q ss_pred ccccceeeEEEEEECCEEEEEEecceEEEEEEEecCC-----------CCCCcceEEEehhhHHHHHhhhcCCCCcEEEE
Q psy13360 153 DIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDK-----------KFSSCSDIIIPRKTVFTLQRLLENKENPVELK 221 (1161)
Q Consensus 153 ~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~-----------~~~~~~~viIP~k~L~eL~klL~~~~~~V~i~ 221 (1161)
.-|.|.++++.+.+.|. |. +......+.. ...++.......++|.+..|.++- .+.|.|.
T Consensus 161 ------d~V~i~~~~~~v~~ss~-gd-~G~~~~~l~~~~~~~~~~~~~~~~e~~~~~F~~~YL~~~~Ka~~l-s~~V~i~ 231 (265)
T 3p91_A 161 ------DSITIGCTKNEVTLTTK-GA-MCETCMTLSALENVDSNGLQIEHNKDVTASFALKQISEFAKSAPL-ADNVKLS 231 (265)
T ss_dssp ------SEEEEEECSSEEEEEEE-CS-SCEEEEEEEC-------CCEEEESSCEEEEEEHHHHHHHGGGGGG-CSEEEEE
T ss_pred ------CEEEEEEECCEEEEEEE-ec-CceEEEEEecCCCCCCceEEEEcCCcEEEEEEHHHHHHhhccccc-CCEEEEE
Confidence 24778888888888775 32 1222222211 113356899999999999999863 3579999
Q ss_pred EeCcE
Q psy13360 222 ISNNQ 226 (1161)
Q Consensus 222 ~~~~~ 226 (1161)
+++..
T Consensus 232 ~~~~~ 236 (265)
T 3p91_A 232 LSGQA 236 (265)
T ss_dssp ECSSS
T ss_pred eCCCc
Confidence 88754
No 69
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A
Probab=98.29 E-value=4.4e-05 Score=83.41 Aligned_cols=197 Identities=9% Similarity=0.117 Sum_probs=128.4
Q ss_pred EccHHHHHHHHHHhhccccCCCchhhhccEEEEEECCeEEEEEecceeEEE--EEeeecc-----cCCceEEEEechhHH
Q psy13360 6 NTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQIT--TYTAVGY-----GNSSINIIVAARKFI 78 (1161)
Q Consensus 6 ~i~k~~L~~aL~~v~~~v~~k~~~piL~~Iliea~~~~L~ltatD~e~~i~--~~i~a~~-----~~~~G~v~V~ak~l~ 78 (1161)
.++-+.|.+++..+. +++.++.+++.+++|++.|+|....+. ..++... ++..- +.++-+.|.
T Consensus 5 ~~~a~~~k~i~~ai~---------~i~~~v~~~~~~~gl~~~A~D~~rvalv~~~l~~~~F~~y~~~~~v-~g~~l~~l~ 74 (247)
T 3ifv_A 5 IVSAATLRDALDSVS---------VLVDECKIRLNEESLSIRAVDPANVGMVDLTLDAAAFESYEAHGGV-IGVNLSRLE 74 (247)
T ss_dssp EECHHHHHHHHHHHH---------TTCSSEEEC---CEEEEEEECTTSSEEEEEEEEGGGSSBC-----C-EEECHHHHH
T ss_pred EEcHHHHHHHHHHHH---------HHhcEEEEEEeCCeEEEEEECCccEEEEEEEEchhcCeEEEccCcE-EEEEHHHHH
Confidence 346777888888777 456899999999999999999764444 3344322 11233 677778888
Q ss_pred HHHhcCCCCccEEEEEeC--cEEEEEECcEEEEEccCCCCCCC----CccCCCCcceEEEEcHHHHHHHHHhhccccccc
Q psy13360 79 DILRSLPETEKVTIYIEN--KHMFIKSGKSKFTLQTLDAKEYP----IMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQ 152 (1161)
Q Consensus 79 ~Ivk~Lp~~~~I~ie~~~--~~l~I~sG~~~~~l~~~~~edfP----~~~~~~~~~~~~~i~~~~L~~aI~~v~~a~s~~ 152 (1161)
++++....++.|+|..++ +++.+..++.+|.++.++++ || .+|. .+....+.+++..|.++++++....
T Consensus 75 kiL~~~~~~d~v~i~~~~~~~~l~~~~~~~~~~~rLid~~-~~~~~~~iP~-~e~~~~v~~~s~~f~~~i~~~~~~s--- 149 (247)
T 3ifv_A 75 EVAGMAGAGDLIHLTLDEETRKLNIRIDGLSYTLALIDPD-SIRQEPDIPD-LDLAANIVLEGTHLDRGIKAADMVS--- 149 (247)
T ss_dssp HHHTTC----CEEECC-------EEEETTEEEEC---CTT-C----CCCCC-CCCSEEEEEEHHHHHHHHHHHHHHC---
T ss_pred HHHhcCCCCCEEEEEEcCCCCEEEEEEeCcEEEEEeeccc-ccccCCCCCC-CCceEEEEEEHHHHHHHHHHHHhhC---
Confidence 888877555578887654 78999999999999999776 54 3453 3457889999999999999987554
Q ss_pred ccccceeeEEEEEE--CCEEEEEEecceEEEEEEEecCC----C-CCCcceEEEehhhHHHHHhhhcCCCCcEEEEEeCc
Q psy13360 153 DIRYYLNGLLLSFQ--KKNIIAVSSDGHRLTYYQVNIDK----K-FSSCSDIIIPRKTVFTLQRLLENKENPVELKISNN 225 (1161)
Q Consensus 153 ~trpiL~GV~~~~~--~~~L~lvATDg~RLa~~~i~~~~----~-~~~~~~viIP~k~L~eL~klL~~~~~~V~i~~~~~ 225 (1161)
.-|.|.++ ++.+++.|. |. +......+.. . ..++.......+.|.+..|.++. .++|.|.+++.
T Consensus 150 ------d~V~i~~~~~~~~~~~s~~-gd-~g~~~~~l~~~~~~~~~~e~~~~~F~~~YL~~~~Ka~~~-s~~V~i~~~~~ 220 (247)
T 3ifv_A 150 ------DHIRLRVDGAEETFHIEAE-GD-TDDVDLSLPPADLISIEAGAADSLFSLDYLKDMNKAIPT-DAEVTVELGEE 220 (247)
T ss_dssp ------SEEEEEEETTTTEEEEEEE-CS-SCEEEEEECGGGCSEEEECCCEEEEEHHHHHHHHHHSCT-TCEEEEEECBS
T ss_pred ------CEEEEEEECCCCEEEEEEE-ec-ceEEEEEECCCceEEEecCeEEEEEeHHHHHHhhhhccC-CCEEEEEecCC
Confidence 24788888 778888775 32 2223332221 0 02356899999999999999863 45799998865
Q ss_pred E
Q psy13360 226 Q 226 (1161)
Q Consensus 226 ~ 226 (1161)
.
T Consensus 221 ~ 221 (247)
T 3ifv_A 221 F 221 (247)
T ss_dssp S
T ss_pred c
Confidence 4
No 70
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=98.25 E-value=1.9e-06 Score=94.83 Aligned_cols=161 Identities=19% Similarity=0.256 Sum_probs=99.5
Q ss_pred cchhHHhHHHhhHhhhcC------------CCCCeEEEEE--ecC-CcEEEEECCCccccccccCCCCCCCCcceEEEEe
Q psy13360 378 LHHFVFEILDNAIDESLA------------GYCTKINVTI--YSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMT 442 (1161)
Q Consensus 378 l~hlv~EivdNsiDe~~~------------g~~~~I~V~i--~~d-gsisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t 442 (1161)
....++|+|.||+|..-. +..+.|.|.| +.+ ..|+|.|||.||+-+.... .|+
T Consensus 69 ~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG~GMs~edL~~------------~l~ 136 (264)
T 1yc1_A 69 KEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLIN------------NLG 136 (264)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH------------HHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECCcCCCHHHHHH------------HHH
Confidence 367899999999998641 1124555555 443 4799999999998776543 233
Q ss_pred eecccCC--C----CCCceeeecccccchhhHhhhhccEEEEEEEeCC-EEEEEEEEcCccccccccccCCccccCcEEe
Q psy13360 443 ELHAGGK--F----NKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNK-KIHYMEFRYGVLQNRIIKTINGISVSPIKII 515 (1161)
Q Consensus 443 ~l~ag~k--f----d~~~yk~sgGlhGvG~svvNalS~~~~V~v~r~g-~~~~q~f~~G~~~~~~~~~~~~~~~~~~~~~ 515 (1161)
....+++ | .+..-...-|..|+|...+-++++.++|.++..+ ..|..+...|. . ..+.+. .
T Consensus 137 ~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~w~~~~~~----~------~~i~~~--~ 204 (264)
T 1yc1_A 137 TIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGG----S------FTVRTD--T 204 (264)
T ss_dssp SCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHEEEEEEEEECTTSCCEEEEECSTT----E------EEEEEC--C
T ss_pred hhccccchhhhhhhccccchhhcCCCCCCccccccCCCEEEEEEecCCCceEEEEEcCCc----e------EEEeec--C
Confidence 3333332 1 0011134678899999999999999999998754 23444444430 0 111110 1
Q ss_pred ccCCCCCcEEEEEe--CccccccCCCCHHHHHHHHHhhhccCCCcEEEEeeccc
Q psy13360 516 GDTNKQGTKIHFWV--DEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERI 567 (1161)
Q Consensus 516 g~~~~~GT~V~F~P--D~~iF~~~~~~~~~l~~Rl~elA~lnpgl~i~l~d~r~ 567 (1161)
+....+||+|+... |..-| ++...|.+.++.+|-.. ..-|++++++.
T Consensus 205 ~~~~~~GT~I~l~Lk~~~~e~----~e~~~i~~lv~k~s~fi-~~PI~~~~~~~ 253 (264)
T 1yc1_A 205 GEPMGRGTKVILHLKEDQTEY----LEERRIKEIVKKHSQFI-GYPITLFVEKE 253 (264)
T ss_dssp SSCCSSEEEEEEEECGGGGGG----GSHHHHHHHHHHHTTTC-SSCEEECCCC-
T ss_pred CCCCCCCeEEEEEECCchhhh----hhHHHHHHHHHHHHhhC-CCCEEEeeccc
Confidence 22356899999873 22222 56788888888888433 35588887753
No 71
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=98.24 E-value=1.9e-06 Score=93.53 Aligned_cols=161 Identities=19% Similarity=0.231 Sum_probs=97.5
Q ss_pred ccchhHHhHHHhhHhhhc--------------CCCCCeEEEEEecC-CcEEEEECCCccccccccCCCCCCCCcceEEEE
Q psy13360 377 GLHHFVFEILDNAIDESL--------------AGYCTKINVTIYSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVM 441 (1161)
Q Consensus 377 gl~hlv~EivdNsiDe~~--------------~g~~~~I~V~i~~d-gsisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~ 441 (1161)
+-...++|+|.||+|..- .+....|.|.++.+ ..|+|.|||.||+-+.... .|
T Consensus 32 ~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~i~I~DnG~GMt~edl~~------------~l 99 (236)
T 2gqp_A 32 NKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVK------------NL 99 (236)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH------------HH
T ss_pred CchHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCCCEEEEEECCcCCCHHHHHH------------HH
Confidence 346889999999999863 11224677777765 4799999999999776543 23
Q ss_pred eeecccCC--C----CCC-----ceeeecccccchhhHhhhhccEEEEEEEeCCE-EEEEEEEcCccccccccccCCccc
Q psy13360 442 TELHAGGK--F----NKN-----SYKISGGLHGIGLSCVNGLSRFLQLTINRNKK-IHYMEFRYGVLQNRIIKTINGISV 509 (1161)
Q Consensus 442 t~l~ag~k--f----d~~-----~yk~sgGlhGvG~svvNalS~~~~V~v~r~g~-~~~q~f~~G~~~~~~~~~~~~~~~ 509 (1161)
+....+|+ | ... .-...-|..|+|...+=.+++.++|.++..+. .|......|. ..+
T Consensus 100 ~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va~~v~V~Sr~~~~~~~~w~~~gg~-----------~~i 168 (236)
T 2gqp_A 100 GTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNE-----------FSV 168 (236)
T ss_dssp HCC---------------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEESSSC-----------EEE
T ss_pred hhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcCCEEEEEEeCCCCceEEEEEeCCE-----------EEE
Confidence 33323222 1 110 12245688999999999999999999987542 2333332231 111
Q ss_pred cCcEEe--ccCCCCCcEEEEEeCccccccCCCCHHHHHHHHHhhhccCCCcEEEEeecc
Q psy13360 510 SPIKII--GDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDER 566 (1161)
Q Consensus 510 ~~~~~~--g~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~Rl~elA~lnpgl~i~l~d~r 566 (1161)
... +....+||+|+....... ..-++...|.+.++.+|-.. ...|.+++++
T Consensus 169 ---~~~~~~~~~~~GT~I~l~Lk~~~--~~~le~~~i~~lv~~~s~~i-~~pI~~~~~~ 221 (236)
T 2gqp_A 169 ---IADPRGNTLGRGTTITLVLKEEA--SDYLELDTIKNLVKKYSQFI-NFPIYVWSSK 221 (236)
T ss_dssp ---EECTTCSCSSSEEEEEEEECGGG--GGGGCHHHHHHHHHHHHTTC-SSCEEEEEEC
T ss_pred ---EeccCCCCCCCCeEEEEEECCcc--hhhChHHHHHHHHHHHhhhC-CCceEEeeee
Confidence 111 123468999998743221 11236778888888887433 3557777765
No 72
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=98.20 E-value=5.7e-06 Score=101.01 Aligned_cols=154 Identities=20% Similarity=0.200 Sum_probs=96.3
Q ss_pred cchhHHhHHHhhHhhhc-------------C-CCCCeEEEEEecC-CcEEEEECCCccccccccCCCCCCCCcceEEEEe
Q psy13360 378 LHHFVFEILDNAIDESL-------------A-GYCTKINVTIYSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMT 442 (1161)
Q Consensus 378 l~hlv~EivdNsiDe~~-------------~-g~~~~I~V~i~~d-gsisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t 442 (1161)
....++|+|.||+|..- . +....|.|.++.+ +.|+|.|||.||+-+.... .++
T Consensus 28 ~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGiGMt~edl~~------------~l~ 95 (624)
T 2ioq_A 28 KEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVID------------HLG 95 (624)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH------------HHH
T ss_pred hHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCCcEEEEEECCCCCCHHHHHH------------HHH
Confidence 46788999999999871 1 1224688888875 4799999999999776443 233
Q ss_pred eecccCC--C----CC--CceeeecccccchhhHhhhhccEEEEEEEeCC----EEEEEEEEcCccccccccccCCcccc
Q psy13360 443 ELHAGGK--F----NK--NSYKISGGLHGIGLSCVNGLSRFLQLTINRNK----KIHYMEFRYGVLQNRIIKTINGISVS 510 (1161)
Q Consensus 443 ~l~ag~k--f----d~--~~yk~sgGlhGvG~svvNalS~~~~V~v~r~g----~~~~q~f~~G~~~~~~~~~~~~~~~~ 510 (1161)
+...+++ | .+ ..-..+.|..|+|...+-++|++++|.++..| ..|..+...| .. -
T Consensus 96 tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~------------~~-~ 162 (624)
T 2ioq_A 96 TIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGE------------GE-Y 162 (624)
T ss_dssp HHCC---------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSS------------SC-C
T ss_pred hhcccccHHHHHHhcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCC------------Ce-E
Confidence 3222322 2 11 11124679999999999999999999998866 2355444433 11 1
Q ss_pred CcEEeccCCCCCcEEEEEeCccccccCCCCHHHHHHHHHhhh--ccCCCcEE
Q psy13360 511 PIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELS--FLNNGVCI 560 (1161)
Q Consensus 511 ~~~~~g~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~Rl~elA--~lnpgl~i 560 (1161)
.+... ....+||+|+....... ..-++...|..-++.+| .-+| +.+
T Consensus 163 ~i~~~-~~~~~GT~I~L~Lk~d~--~Efl~~~~i~~ivkkys~fi~~P-I~~ 210 (624)
T 2ioq_A 163 TVADI-TKEDRGTEITLHLREGE--DEFLDDWRVRSIISKYSDHIALP-VEI 210 (624)
T ss_dssp EEEEE-CCSSSEEEEEEEECTTC--GGGGCHHHHHHHHHHHHTTCSSC-EEE
T ss_pred EEEEC-CCCCCCeEEEEEEcchh--hhcchHHHHHHHHHHHhccCCCc-eEE
Confidence 11111 13468999988733211 11235778888888888 4557 555
No 73
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=98.18 E-value=7.4e-06 Score=98.81 Aligned_cols=154 Identities=20% Similarity=0.200 Sum_probs=98.0
Q ss_pred cchhHHhHHHhhHhhhc-------------C-CCCCeEEEEEecC-CcEEEEECCCccccccccCCCCCCCCcceEEEEe
Q psy13360 378 LHHFVFEILDNAIDESL-------------A-GYCTKINVTIYSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMT 442 (1161)
Q Consensus 378 l~hlv~EivdNsiDe~~-------------~-g~~~~I~V~i~~d-gsisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t 442 (1161)
....++|+|.||+|..- . .....|.|.++.+ +.|+|.|||.||+-+.... .++
T Consensus 28 ~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnGiGMt~edl~~------------~l~ 95 (559)
T 1y4s_A 28 KEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVID------------HLG 95 (559)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTTEEEEEECSSCCCHHHHHH------------HHS
T ss_pred hHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCCcEEEEEECCCCCCHHHHHH------------HHh
Confidence 36788999999999871 1 2235788888875 4799999999999776543 233
Q ss_pred eecccCC--C----CC--CceeeecccccchhhHhhhhccEEEEEEEeCC----EEEEEEEEcCccccccccccCCcccc
Q psy13360 443 ELHAGGK--F----NK--NSYKISGGLHGIGLSCVNGLSRFLQLTINRNK----KIHYMEFRYGVLQNRIIKTINGISVS 510 (1161)
Q Consensus 443 ~l~ag~k--f----d~--~~yk~sgGlhGvG~svvNalS~~~~V~v~r~g----~~~~q~f~~G~~~~~~~~~~~~~~~~ 510 (1161)
+...+|+ | .+ ..-..+.|..|+|...+-+++++++|.++..| ..|..+...| .. -
T Consensus 96 tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~------------~~-~ 162 (559)
T 1y4s_A 96 TIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGE------------GE-Y 162 (559)
T ss_dssp CCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSS------------SE-E
T ss_pred hhcccccHHHHHHhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCC------------Ce-e
Confidence 3333332 2 11 11234679999999989999999999998866 2355444443 11 0
Q ss_pred CcEEeccCCCCCcEEEEEeCccccccCCCCHHHHHHHHHhhh--ccCCCcEE
Q psy13360 511 PIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELS--FLNNGVCI 560 (1161)
Q Consensus 511 ~~~~~g~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~Rl~elA--~lnpgl~i 560 (1161)
.+... ....+||+|+....... ..-++...|..-++.+| .-+| +.+
T Consensus 163 ~i~~~-~~~~~GT~I~L~Lk~d~--~Efle~~~I~~iv~kys~fi~~P-I~~ 210 (559)
T 1y4s_A 163 TVADI-TKEDRGTEITLHLREGE--DEFLDDWRVRSIISKYSDHIALP-VEI 210 (559)
T ss_dssp EEEEE-CCCSCEEEEEEEECTTC--GGGSCHHHHHHHHHHHHTTCSSC-EEE
T ss_pred EEeEC-CCCCCCeEEEEEEcchh--hhcchHHHHHHHHHHHhccCCCc-eEE
Confidence 11111 13478999988743211 11235778888888888 4567 555
No 74
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=98.07 E-value=5.8e-06 Score=89.17 Aligned_cols=172 Identities=22% Similarity=0.240 Sum_probs=101.0
Q ss_pred cchhHHhHHHhhHhhhcC--------------CCCCeEEEEEecC-CcEEEEECCCccccccccCCCCCCCCcceEEEEe
Q psy13360 378 LHHFVFEILDNAIDESLA--------------GYCTKINVTIYSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMT 442 (1161)
Q Consensus 378 l~hlv~EivdNsiDe~~~--------------g~~~~I~V~i~~d-gsisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t 442 (1161)
-...++|+|.||.|..-. +.--.|.|..+.+ ..++|.|||.||+-+.... .++
T Consensus 40 ~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~edL~~------------~Lg 107 (239)
T 3nmq_A 40 KEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLIN------------NLG 107 (239)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHT------------HHH
T ss_pred cHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCCccEEEEEeCCCCCCHHHHHH------------HHH
Confidence 467889999999998631 1223577777764 5799999999998776543 122
Q ss_pred eecc-cCC-C----CCCceeeecccccchhhHhhhhccEEEEEEEeCC-EEEEEEEEcCccccccccccCCccccCcEEe
Q psy13360 443 ELHA-GGK-F----NKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNK-KIHYMEFRYGVLQNRIIKTINGISVSPIKII 515 (1161)
Q Consensus 443 ~l~a-g~k-f----d~~~yk~sgGlhGvG~svvNalS~~~~V~v~r~g-~~~~q~f~~G~~~~~~~~~~~~~~~~~~~~~ 515 (1161)
++-. |.+ | .++.-....|..|||...+=.+++.++|.+++++ ..|..+...|. . -.+.+. .
T Consensus 108 tIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~~~~~~W~s~~~g--~--------fti~~~--~ 175 (239)
T 3nmq_A 108 TIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGG--S--------FTVRAD--H 175 (239)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSTT--E--------EEEEEC--C
T ss_pred HHhcccchhhhhhhcccCCcccccccCcccccccccCCEEEEEEeeCCCceeEEEECCCC--c--------EEEEec--C
Confidence 2222 221 1 0111134679999999999999999999998754 33544433330 0 111111 1
Q ss_pred ccCCCCCcEEEEEeCccccccCCCCHHHHHHHHHhhhccCCCcEEEEeecccceEEEEEeC
Q psy13360 516 GDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFK 576 (1161)
Q Consensus 516 g~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~Rl~elA~lnpgl~i~l~d~r~~~~~~f~~~ 576 (1161)
+....+||+|+......- ..-++...|+.-++..+-.- +.-|++.-++....+.|..+
T Consensus 176 ~~~~~~GT~I~L~lk~d~--~e~l~~~~i~~lv~kys~fi-~~pI~~~~~~~~~~~~~~~~ 233 (239)
T 3nmq_A 176 GEPIGRGTKVILHLKEDQ--TEYLEERRVKEVVKKHSQFI-GYPITLYLEKEREKGEFNSK 233 (239)
T ss_dssp SSCCSSEEEEEEEECGGG--GGGGSHHHHHHHHHHHCTTC-SSCEEECCCSCC--------
T ss_pred CCcCCCCCEEEEEECCCh--HHhcCHHHHHHHHHHHHhcc-CCceEEeeeeeccHHHhhhc
Confidence 233478999998743321 11256677777777776321 45588877775555556544
No 75
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=97.97 E-value=2.6e-05 Score=85.82 Aligned_cols=163 Identities=21% Similarity=0.210 Sum_probs=101.4
Q ss_pred ccchhHHhHHHhhHhhhcC--------------CCCCeEEEEEecC-CcEEEEECCCccccccccCCCCCCCCcceEEEE
Q psy13360 377 GLHHFVFEILDNAIDESLA--------------GYCTKINVTIYSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVM 441 (1161)
Q Consensus 377 gl~hlv~EivdNsiDe~~~--------------g~~~~I~V~i~~d-gsisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~ 441 (1161)
+-...++|+|.||.|..-. +..-.|.|.++++ +.|+|.|||.||+-+.... .+
T Consensus 46 n~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~~tLtI~DNGiGMt~edL~~------------~L 113 (281)
T 3peh_A 46 QKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKVDLIN------------NL 113 (281)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH------------HH
T ss_pred ChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCCcEEEEEeCCCCCCHHHHHH------------HH
Confidence 3467889999999998631 1234677777764 5899999999998775543 23
Q ss_pred eeecccCC--C----CC-CceeeecccccchhhHhhhhccEEEEEEEeCC-EEEEEEEEcCccccccccccCCccccCcE
Q psy13360 442 TELHAGGK--F----NK-NSYKISGGLHGIGLSCVNGLSRFLQLTINRNK-KIHYMEFRYGVLQNRIIKTINGISVSPIK 513 (1161)
Q Consensus 442 t~l~ag~k--f----d~-~~yk~sgGlhGvG~svvNalS~~~~V~v~r~g-~~~~q~f~~G~~~~~~~~~~~~~~~~~~~ 513 (1161)
+.+..+|+ | .. ..-....|.-|||...+=++++.++|.++.++ ..|......| .. ..+.
T Consensus 114 gtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~vadkV~V~Sk~~~~~~~~Wes~g~------------g~-fti~ 180 (281)
T 3peh_A 114 GTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNDDEQYIWESTAD------------AK-FTIY 180 (281)
T ss_dssp HHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGGTEEEEEEEEECTTSCCEEEEEETT------------SC-EEEE
T ss_pred HHHHhHhhhhHHHhhhccccccccccccCccchhhccccCEEEEEEecCCCCEEEEEECCC------------cc-EEEE
Confidence 33323321 1 00 11123579999999999999999999998765 3354444444 10 0111
Q ss_pred Ee--ccCCCCCcEEEEEeCccccccCCCCHHHHHHHHHhhhccCCCcEEEEeeccc
Q psy13360 514 II--GDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERI 567 (1161)
Q Consensus 514 ~~--g~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~Rl~elA~lnpgl~i~l~d~r~ 567 (1161)
.. +....+||+|+......- ..-++...|+.-++..+-.- +.-|.|..++.
T Consensus 181 ~~~~~~~~~~GT~I~L~Lked~--~e~le~~~ik~ivkkys~fi-~~pI~l~~~k~ 233 (281)
T 3peh_A 181 KDPRGATLKRGTRISLHLKEDA--TNLLNDKKLMDLISKYSQFI-QFPIYLLHENV 233 (281)
T ss_dssp ECTTCSTTSSEEEEEEEECGGG--GGGGSHHHHHHHHHHHTTTC-CSCEEEEEEEE
T ss_pred EcCCCCCCCCCeEEEEEECCch--hhhcCHHHHHHHHHHhhccC-CcceEEeeeee
Confidence 11 223568999998744321 11256777888777776322 35577777664
No 76
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=97.90 E-value=1.2e-05 Score=88.62 Aligned_cols=162 Identities=19% Similarity=0.228 Sum_probs=96.3
Q ss_pred cchhHHhHHHhhHhhhc--------------CCCCCeEEEEEecC-CcEEEEECCCccccccccCCCCCCCCcceEEEEe
Q psy13360 378 LHHFVFEILDNAIDESL--------------AGYCTKINVTIYSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMT 442 (1161)
Q Consensus 378 l~hlv~EivdNsiDe~~--------------~g~~~~I~V~i~~d-gsisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t 442 (1161)
-...++|+|.||+|..- .+..-.|.|.++.+ ..++|.|||.||+-+.... .|+
T Consensus 29 ~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~I~DnGiGMt~edl~~------------~l~ 96 (269)
T 1qy5_A 29 KEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVK------------NLG 96 (269)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH------------HHH
T ss_pred chHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCceEEEEEECCCCCCHHHHHH------------Hhh
Confidence 35689999999999863 12223577777654 4799999999999776543 233
Q ss_pred ee-cccCC-C----CCC-----ceeeecccccchhhHhhhhccEEEEEEEeCCE-EEEEEEEcCccccccccccCCcccc
Q psy13360 443 EL-HAGGK-F----NKN-----SYKISGGLHGIGLSCVNGLSRFLQLTINRNKK-IHYMEFRYGVLQNRIIKTINGISVS 510 (1161)
Q Consensus 443 ~l-~ag~k-f----d~~-----~yk~sgGlhGvG~svvNalS~~~~V~v~r~g~-~~~q~f~~G~~~~~~~~~~~~~~~~ 510 (1161)
++ +.|.+ | ... .-....|..|+|...+-.++..++|.++..+. .|......|. ..+.
T Consensus 97 tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~~~~~~w~s~gg~-----------~~i~ 165 (269)
T 1qy5_A 97 TIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNE-----------FSVI 165 (269)
T ss_dssp SCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSC-----------EEEE
T ss_pred hhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhccceEEEEEEecCCcEEEEEEeCCE-----------EEEE
Confidence 33 33332 2 000 11234589999999999999999999887542 2333332231 1111
Q ss_pred CcEEeccCCCCCcEEEEEeCccccccCCCCHHHHHHHHHhhhccCCCcEEEEeecc
Q psy13360 511 PIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDER 566 (1161)
Q Consensus 511 ~~~~~g~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~Rl~elA~lnpgl~i~l~d~r 566 (1161)
+.. .+....+||+|+......- ..-++...|..-++.+|-.. +.-|++..++
T Consensus 166 ~~~-~~~~~~~GT~I~L~Lk~d~--~e~le~~~i~~lvkkys~fi-~~PI~l~~~k 217 (269)
T 1qy5_A 166 ADP-RGNTLGRGTTITLVLKEEA--SDYLELDTIKNLVKKYSQFI-NFPIYVWSSK 217 (269)
T ss_dssp ECT-TCSCSSSEEEEEEEECGGG--GGGGSHHHHHHHHHTTCTTC-SSCEEEEEEC
T ss_pred ecc-CCCcCCCCeEEEEEEcccc--hhhhhHHHHHHHHHhhhccc-ceeeEEeeee
Confidence 100 0123468999987632211 11246677777777777322 3457777665
No 77
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C*
Probab=97.73 E-value=0.0091 Score=65.10 Aligned_cols=198 Identities=10% Similarity=0.087 Sum_probs=132.8
Q ss_pred cHHHHHHHHHHhhccccCCCchhhhccEEEEEECCeEEEEEecceeEEE--EEeeecc-----cCCceEEEEechhHHHH
Q psy13360 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQIT--TYTAVGY-----GNSSINIIVAARKFIDI 80 (1161)
Q Consensus 8 ~k~~L~~aL~~v~~~v~~k~~~piL~~Iliea~~~~L~ltatD~e~~i~--~~i~a~~-----~~~~G~v~V~ak~l~~I 80 (1161)
+-+.|.+++..++.++ ..+.+++.+++|.++|.|..-.+. ..++.+. ++.+-++.|+-..|.++
T Consensus 8 ~a~~lk~ii~ai~~lv---------~e~~~~~~~~Gi~l~amD~s~valv~l~l~~~~F~~Y~~d~~~~~gvnl~~l~ki 78 (249)
T 3fds_C 8 NAKDFFSFINSITNVT---------DSIILNFTEDGIFSRHLTEDKVLMAIMRIPKDVLSEYSIDSPTSVKLDVSSVKKI 78 (249)
T ss_dssp CHHHHHHHHHHHTTTC---------SSEEEEECSSEEEEEEECTTSSEEEEEEEEGGGSSEEECSSCEEEEECHHHHHHH
T ss_pred chHHHHHHHHHHHHHh---------CeEEEEEcCCeEEEEEECCCcEEEEEEEECHHhCeEEECCCCeEEEEEHHHHHHH
Confidence 5667777888887666 678999999999999998764443 4455432 34466899999999999
Q ss_pred HhcCC-CCccEEEEEeCcEEEEEEC------cEEEEEccCCCC--CCCCccCCCCcceEEEEcHHHHHHHHHhhcccccc
Q psy13360 81 LRSLP-ETEKVTIYIENKHMFIKSG------KSKFTLQTLDAK--EYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQ 151 (1161)
Q Consensus 81 vk~Lp-~~~~I~ie~~~~~l~I~sG------~~~~~l~~~~~e--dfP~~~~~~~~~~~~~i~~~~L~~aI~~v~~a~s~ 151 (1161)
+|... .++.+.++.+++.|.|... ..+|.|+.++.+ +.| +|.. +....+.+++..|.++++.......
T Consensus 79 Lk~~~~~~d~l~~~~~~~~l~i~~e~~~~~~~~~~~l~l~d~~~e~~~-~p~~-e~~~~v~m~s~~f~~~~~dl~~~sd- 155 (249)
T 3fds_C 79 LSKASSKKATIELTETDSGLKIIIRDEKSGAKSTIYIKAEKGQVEQLT-EPKV-NLAVNFTTDESVLNVIAADVTLVGE- 155 (249)
T ss_dssp HTTCCCSCEEEEEEECSSEEEEEEEETTTCCEEEEEEECEECCCCCCC-CCCC-CCCEEEEECHHHHHHHHHHHHHHCS-
T ss_pred HHhhCCCCCEEEEecCCCEEEEEEEeCCCCEEEEEEEECCCCccccCC-CCCC-cceEEEEEEHHHHHHHHHHHHHhCC-
Confidence 99998 6655666666788777652 257889888654 333 3332 4568899999999999998855421
Q ss_pred cccccceeeEEEEEECCEEEEEEecceEEEEEEEecCC-----CCCCcceEEEehhhHHHHHh-hhcCCCCcEEEEEeCc
Q psy13360 152 QDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDK-----KFSSCSDIIIPRKTVFTLQR-LLENKENPVELKISNN 225 (1161)
Q Consensus 152 ~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~-----~~~~~~~viIP~k~L~eL~k-lL~~~~~~V~i~~~~~ 225 (1161)
-|.|..+++.+.+.+.--..-+...++.+. ...++.......+.|..+.| ..+- ...|+|.++.+
T Consensus 156 --------~v~i~~~~~~~~f~~~gd~~~~~~~~~~~~~l~~~~~~~~~~~~fsl~yL~~~~K~a~~l-s~~V~i~~~~~ 226 (249)
T 3fds_C 156 --------EMRISTEEDKIKIEAGEEGKRYVAFLMKDKPLKELSIDTSASSSYSAEMFKDAVKGLRGF-SAPTMVSFGEN 226 (249)
T ss_dssp --------EEEEEEETTEEEEEEEETTEEEEEEEEETBEESEEEESSCCEEEEEHHHHHHHHHTTTTC-CSCEEEEECTT
T ss_pred --------EEEEEEECCEEEEEEEecCcEEEEEEcCCCCcEEEEcCCceEEEEEHHHHHHHHhhhccc-CCEEEEEecCC
Confidence 244555555544433211111122211111 11234578889999999999 8764 45799998876
Q ss_pred E
Q psy13360 226 Q 226 (1161)
Q Consensus 226 ~ 226 (1161)
.
T Consensus 227 ~ 227 (249)
T 3fds_C 227 L 227 (249)
T ss_dssp C
T ss_pred c
Confidence 5
No 78
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00014 Score=89.25 Aligned_cols=157 Identities=18% Similarity=0.211 Sum_probs=96.2
Q ss_pred chhHHhHHHhhHhhhc--------------CCCCCeEEEEEecC-CcEEEEECCCccccccccCCCCCCCCcceEEEEee
Q psy13360 379 HHFVFEILDNAIDESL--------------AGYCTKINVTIYSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTE 443 (1161)
Q Consensus 379 ~hlv~EivdNsiDe~~--------------~g~~~~I~V~i~~d-gsisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t~ 443 (1161)
...++|+|.||+|..- .+....|.|.++.+ +.|+|.|||.||+-+.... .|++
T Consensus 28 eifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~~~I~I~DnGiGMt~edl~~------------~l~t 95 (677)
T 2cg9_A 28 EIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELIN------------NLGT 95 (677)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGTEEEEEECSCCCCHHHHHG------------GGSS
T ss_pred hHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCCCEEEEEECCCCCCHHHHHH------------HHHh
Confidence 5678999999999872 11234688888765 4799999999999776543 1222
Q ss_pred e-cccC-----CCCCCceeeecccccchhhHhhhhccEEEEEEEeCCE-EEEEEEEcCccccccccccCCccccCcEEec
Q psy13360 444 L-HAGG-----KFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKK-IHYMEFRYGVLQNRIIKTINGISVSPIKIIG 516 (1161)
Q Consensus 444 l-~ag~-----kfd~~~yk~sgGlhGvG~svvNalS~~~~V~v~r~g~-~~~q~f~~G~~~~~~~~~~~~~~~~~~~~~g 516 (1161)
. ..|. |..+..-....|.-|||...+=+++++++|.+++.|. .|......|. . -.+.+. ..+
T Consensus 96 IA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~~~~~W~s~g~~--~--------~ti~~~-~~~ 164 (677)
T 2cg9_A 96 IAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGG--S--------FTVTLD-EVN 164 (677)
T ss_dssp SSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSSS--E--------EEEEEC-CSS
T ss_pred HhccccHHHHHhhhcccchhhcCCCCchhHHHhhcCcEEEEEEccCCCceEEEEEcCCc--e--------EEEeec-CCC
Confidence 2 2332 2222112245789999998888899999999987663 3444433330 0 111110 012
Q ss_pred cCCCCCcEEEEEeCccccccCCCCHHHHHHHHHhhh-ccCCCcEEEE
Q psy13360 517 DTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELS-FLNNGVCITL 562 (1161)
Q Consensus 517 ~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~Rl~elA-~lnpgl~i~l 562 (1161)
....+||+|+......- ..-++...|..-++.+| |+ +.-|++
T Consensus 165 ~~~~~GT~I~L~Lk~d~--~e~l~~~~i~~lvkkys~fi--~~PI~l 207 (677)
T 2cg9_A 165 ERIGRGTILRLFLKDDQ--LEYLEEKRIKEVIKRHSEFV--AYPIQL 207 (677)
T ss_dssp CCCSSEEEEEEEECTTG--GGGGCHHHHHHHHHHHSTTC--SSCEEE
T ss_pred CCCCCCeEEEEEEcchh--hccccHHHHHHHHHHHHhhC--CCCeEE
Confidence 34578999998732211 11246777777777777 44 445666
No 79
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=97.66 E-value=0.00012 Score=89.72 Aligned_cols=158 Identities=19% Similarity=0.228 Sum_probs=86.6
Q ss_pred cchhHHhHHHhhHhhhc-------C-------CCCCeEEEEEecC-CcEEEEECCCccccccccCCCCCCCCcceEEEEe
Q psy13360 378 LHHFVFEILDNAIDESL-------A-------GYCTKINVTIYSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMT 442 (1161)
Q Consensus 378 l~hlv~EivdNsiDe~~-------~-------g~~~~I~V~i~~d-gsisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t 442 (1161)
-...++|+|.||+|..- . .....|.|.++.+ ..|+|.|||.||+-+.... .|+
T Consensus 46 ~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGiGMt~edl~~------------~l~ 113 (666)
T 2o1u_A 46 KEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVK------------NLG 113 (666)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH------------HTT
T ss_pred chHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCCCEEEEEECCCCCCHHHHHH------------HHh
Confidence 35688999999999871 1 1224688888775 4799999999998775433 122
Q ss_pred ee-cccCC-C----CCC-----ceeeecccccchhhHhhhhccEEEEEEEeCCE-EEEEEEEcCccccccccccCCcccc
Q psy13360 443 EL-HAGGK-F----NKN-----SYKISGGLHGIGLSCVNGLSRFLQLTINRNKK-IHYMEFRYGVLQNRIIKTINGISVS 510 (1161)
Q Consensus 443 ~l-~ag~k-f----d~~-----~yk~sgGlhGvG~svvNalS~~~~V~v~r~g~-~~~q~f~~G~~~~~~~~~~~~~~~~ 510 (1161)
+. ..|.+ | .+. .-....|..|+|...+=.++++++|.++..|. .|......|. ..+.
T Consensus 114 tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~~~~~~W~s~gg~-----------~ti~ 182 (666)
T 2o1u_A 114 TIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNE-----------FSVI 182 (666)
T ss_dssp C-------------------------------CTTGGGGGTEEEEEEEEECTTSCCEEEEESSSC-----------CEEE
T ss_pred hhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCCCceEEEEEeCCe-----------EEEE
Confidence 22 22221 1 111 12235689999999988899999999987653 2333332231 1111
Q ss_pred CcEEeccCCCCCcEEEEEeCccccccCCCCHHHHHHHHHhhh--ccCCCcEEEEee
Q psy13360 511 PIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELS--FLNNGVCITLID 564 (1161)
Q Consensus 511 ~~~~~g~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~Rl~elA--~lnpgl~i~l~d 564 (1161)
+.. .+....+||+|+....... ..-++...|..-++.+| .-+| |.|.+
T Consensus 183 ~~~-~~~~~~~GT~I~L~Lk~d~--~Efle~~~I~~ivkkys~fi~~P---I~~~~ 232 (666)
T 2o1u_A 183 ADP-RGNTLGRGTTITLVLKEEA--SDYLELDTIKNLVKKYSQFINFP---IYVWS 232 (666)
T ss_dssp ECT-TCCSSSSEEEEEEEECTTT--TTSSSTTHHHHHHHHHSTTCCSC---EEEEE
T ss_pred ecc-cCCCCCCCeEEEEEEccch--hhhccHHHHHHHHHHHHhhCCCc---eEEec
Confidence 100 0123468999998733211 11235667787788887 4456 66644
No 80
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.48 E-value=0.00016 Score=71.52 Aligned_cols=93 Identities=17% Similarity=0.268 Sum_probs=59.2
Q ss_pred ccchhHHhHHHhhHhhhcCCC-CCeEEEEEecC-C--cEEEEECCCccccccccCCCCCCCCcceEEEEeeecccCCCCC
Q psy13360 377 GLHHFVFEILDNAIDESLAGY-CTKINVTIYSD-N--SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNK 452 (1161)
Q Consensus 377 gl~hlv~EivdNsiDe~~~g~-~~~I~V~i~~d-g--sisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t~l~ag~kfd~ 452 (1161)
-+..++.|+++||+..+..+. ...|.|.+..+ + .|+|.|||.||| + .+. +|.....+..
T Consensus 39 ~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~g~~-~-~~~------------~~~~~~~~~~--- 101 (145)
T 1th8_A 39 EIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIP-D-IEE------------ARQPLFTTKP--- 101 (145)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEECSSCCS-C-HHH------------HTCCC--------
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeCCEEEEEEEECCCCcC-h-HHH------------hhcccccCCC---
Confidence 478889999999998876532 46788887653 3 589999999999 3 221 1111111111
Q ss_pred CceeeecccccchhhHhhhhccEEEEEEEeC-CEEEEEEE
Q psy13360 453 NSYKISGGLHGIGLSCVNGLSRFLQLTINRN-KKIHYMEF 491 (1161)
Q Consensus 453 ~~yk~sgGlhGvG~svvNalS~~~~V~v~r~-g~~~~q~f 491 (1161)
..+-+|.|++++..+.+.+.++...+ |..+...|
T Consensus 102 -----~~~~~GlGL~iv~~~~~~i~~~~~~~~Gt~v~~~l 136 (145)
T 1th8_A 102 -----ELERSGMGFTIMENFMDEVIVESEVNKGTTVYLKK 136 (145)
T ss_dssp -------CCCSCHHHHHHHHSSEEEEEEETTTEEEEEEEE
T ss_pred -----CCCCCcchHHHHHHHHheEEEEeCCCCCEEEEEEE
Confidence 22347999999999999666654432 34444444
No 81
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=97.31 E-value=0.00039 Score=75.09 Aligned_cols=129 Identities=22% Similarity=0.237 Sum_probs=77.2
Q ss_pred eEEEEEecC-CcEEEEECCCccccccccCCCCCCCCcceEEEEeeecccC-C-C----C-CCceeeecccccchhhHhhh
Q psy13360 400 KINVTIYSD-NSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGG-K-F----N-KNSYKISGGLHGIGLSCVNG 471 (1161)
Q Consensus 400 ~I~V~i~~d-gsisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t~l~ag~-k-f----d-~~~yk~sgGlhGvG~svvNa 471 (1161)
.|.|.++++ +.|+|.|||.||+-+.... .|+++-.+| + | . +..-....|.-|||...+=.
T Consensus 120 ~I~I~~Dk~~~tLtI~DNGiGMTkeeL~~------------~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFm 187 (272)
T 3ied_A 120 IIKIKPDKEKKTLTITDNGIGMDKSELIN------------NLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFL 187 (272)
T ss_dssp CEEEEEETTTTEEEEEECSCCCCHHHHHH------------HTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGG
T ss_pred EEEEEEeCCCCEEEEEeCCCCCCHHHHHH------------HHHHHhhcchhhHHHHhhcccccccccCcccceeheeec
Confidence 588888875 5899999999999776553 122222222 1 2 0 00112356999999999989
Q ss_pred hccEEEEEEEeCCEEEEEEEEcCccccccccccCCccccCcE----EeccCCCCCcEEEEEeCccccccCCCCHHHHHHH
Q psy13360 472 LSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIK----IIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKR 547 (1161)
Q Consensus 472 lS~~~~V~v~r~g~~~~q~f~~G~~~~~~~~~~~~~~~~~~~----~~g~~~~~GT~V~F~PD~~iF~~~~~~~~~l~~R 547 (1161)
+++.++|.++.++..|..+...+. . -.+.+.. ..+....+||+|+......-- .-++...|+.-
T Consensus 188 VAdkV~V~Sk~dd~~~~WeS~g~g----s------fti~~~~~~~~~~g~~~~~GT~I~L~Lked~~--e~le~~~ik~l 255 (272)
T 3ied_A 188 VSNRVEVYTKKEDQIYRWSSDLKG----S------FSVNEIKKYDQEYDDIKGSGTKIILHLKEECD--EYLEDYKLKEL 255 (272)
T ss_dssp TEEEEEEEEESSSCEEEEEECSSS----E------EEEEECTTCTTCC--CCSSEEEEEEEECGGGG--GGGSHHHHHHH
T ss_pred cCCEEEEEEcCCCceEEEEECCCC----C------EEEEECcccccccCCCCCCCcEEEEEECCChH--HhcCHHHHHHH
Confidence 999999999866666666554430 0 0111110 012235789999877443211 12456667766
Q ss_pred HHhhh
Q psy13360 548 IRELS 552 (1161)
Q Consensus 548 l~elA 552 (1161)
++..+
T Consensus 256 ikkys 260 (272)
T 3ied_A 256 IKKYS 260 (272)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 66665
No 82
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.17 E-value=0.00024 Score=74.80 Aligned_cols=78 Identities=26% Similarity=0.339 Sum_probs=42.0
Q ss_pred ccchhHHhHHHhhHhhhcCCCCCeEEEEEecCCcEEEEECCCccccccccCCCCCCCCcceEEEEeeecccCCCCCCcee
Q psy13360 377 GLHHFVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYK 456 (1161)
Q Consensus 377 gl~hlv~EivdNsiDe~~~g~~~~I~V~i~~dgsisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t~l~ag~kfd~~~yk 456 (1161)
-|.+++.++|+||+..+- ....|.|.+..++ |+|.|||.|||.+..+. +|.....+.+
T Consensus 117 ~l~~il~nLl~NAi~~~~--~~~~i~i~~~~~~-i~V~D~G~Gi~~~~~~~------------if~~f~~~~~------- 174 (222)
T 3jz3_A 117 LLSLLVRNLLDNAVRYSP--QGSVVDVTLNADN-FIVRDNGPGVTPEALAR------------IGERFYRPPG------- 174 (222)
T ss_dssp HHHHHHHHHHHHHHHTCC--TTCEEEEEECSSE-EEEECSCC--------------------------------------
T ss_pred HHHHHHHHHHHHHHHcCC--CCCeEEEEEccCe-EEEEECCCCCCHHHHHH------------HHhhhccCCC-------
Confidence 478888899999998753 3456888887766 99999999999876654 4544443211
Q ss_pred eecccccchhhHhhhhccEE
Q psy13360 457 ISGGLHGIGLSCVNGLSRFL 476 (1161)
Q Consensus 457 ~sgGlhGvG~svvNalS~~~ 476 (1161)
...+-+|+|+++|..+.+.+
T Consensus 175 ~~~~g~GlGL~i~~~i~~~~ 194 (222)
T 3jz3_A 175 QTATGSGLGLSIVQRIAKLH 194 (222)
T ss_dssp -------CTHHHHHHHHHHT
T ss_pred CCCCcccccHHHHHHHHHHc
Confidence 12234799999998887543
No 83
>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A
Probab=97.08 E-value=0.019 Score=63.18 Aligned_cols=213 Identities=11% Similarity=0.137 Sum_probs=135.2
Q ss_pred CceEEEc-cHHHHHHHHHHhhccccCCCchhhhccEEEEEECCeEEEEEecceeEEEEE--eeecc-----cC----Cce
Q psy13360 1 MQLVVNT-EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTY--TAVGY-----GN----SSI 68 (1161)
Q Consensus 1 Mk~~v~i-~k~~L~~aL~~v~~~v~~k~~~piL~~Iliea~~~~L~ltatD~e~~i~~~--i~a~~-----~~----~~G 68 (1161)
|+|.+.- +-+.|.++++.+++++ ..+.|++.+++|.+.|.|..-..-+. ++.+. .+ +..
T Consensus 1 M~~~i~~~~~~~~~k~i~als~l~---------~e~~~~~~~~gl~l~a~d~S~va~v~l~~~~~fF~~Y~~~~~~~~~~ 71 (266)
T 3a1j_A 1 MKCLVTGGNVKVLGKAVHSLSRIG---------DELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQYQAATPGQDLL 71 (266)
T ss_dssp CEEEEETHHHHHHHHHHHHHHTTC---------SEEEEEEETTEEEEEEECTTSCEEEEEEECGGGSSEEECCCSSSCCC
T ss_pred CEeEEcchhHHHHHHHHHHHHhhC---------CcEEEEEccCcEEEEEEcCcccEEEEEEEchHhhhheecCCCCCCcE
Confidence 8886542 3456777788887776 68999999999999999976544433 33221 11 136
Q ss_pred EEEEechhHHHHHhcCCCC----ccEEEEEe--CcEEEE--EECc---EEEEEccCCCCC-CCCccCCCCcceEEEEcHH
Q psy13360 69 NIIVAARKFIDILRSLPET----EKVTIYIE--NKHMFI--KSGK---SKFTLQTLDAKE-YPIMTLNSKYDFEFTLSQK 136 (1161)
Q Consensus 69 ~v~V~ak~l~~Ivk~Lp~~----~~I~ie~~--~~~l~I--~sG~---~~~~l~~~~~ed-fP~~~~~~~~~~~~~i~~~ 136 (1161)
.+.|+.+.+..++|..... +.++++.+ .+.+.+ .+.. .+|+|+.++.+. -|.+|.. +....+.+++.
T Consensus 72 ~~gv~~k~l~kilk~~~~~d~~vd~~~i~~~~~~~~l~~~~~~~~~~~k~~~l~l~d~~~~~~~~~~~-~~~~~i~~~s~ 150 (266)
T 3a1j_A 72 RCKILMKSFLSVFRSLAMLEKTVEKCCISLNGRSSRLVVQLHCKFGVRKTHNLSFQDCESLQAVFDPA-SCPHMLRAPAR 150 (266)
T ss_dssp CEEEEHHHHHHHHCCHHHHHHHEEEEEEECCTTCSEEEEEEEEGGGCEEEEEEECEECCCCCCCCCGG-GCSEEEEEEHH
T ss_pred EEEEEhhHHHHHhCCcccccccceEEEEEEcCCCceEEEEEEccCCceEEEEEEEEccccccceechh-hCCceEEEChH
Confidence 8999999999999998752 25878764 455544 4444 689999887643 3444433 34678999999
Q ss_pred HHHHHHHhhcccccccccccceeeEEEEEE-CCEEEEEE-----ecce-EEEEEEEecCCC------CCCcceEEEehhh
Q psy13360 137 TLKCILNMVYFSIAQQDIRYYLNGLLLSFQ-KKNIIAVS-----SDGH-RLTYYQVNIDKK------FSSCSDIIIPRKT 203 (1161)
Q Consensus 137 ~L~~aI~~v~~a~s~~~trpiL~GV~~~~~-~~~L~lvA-----TDg~-RLa~~~i~~~~~------~~~~~~viIP~k~ 203 (1161)
.|.++++...... .-|-|.+. ++.+.+.+ +|+. .....++..+.+ ..++.+++..-|.
T Consensus 151 ~~~~~~~~~~~~~---------d~v~i~~~~~~~v~~~s~~~~~~~~~~~~~~t~~~~~~~e~~~~~~~~~~~~tFslky 221 (266)
T 3a1j_A 151 VLGEAVLPFSPAL---------AEVTLGIGRGRRVILRSYHEEEADSTAKAMVTEMCLGEEDFQQLQAQEGVAITFCLKE 221 (266)
T ss_dssp HHHHHHTTSCTTC---------CEEEEEECGGGCEEEEEECCC-CCCSCCCCEEEEEECGGGCSEEECCTTCEEEEEHHH
T ss_pred HHHHHHHhCCCCh---------hhEEEEeCCCCEEEEEEcccCccccccccceEEEEECHHHhhheecCCCCEEEEEHHH
Confidence 9999998764331 22555555 55555555 1221 111222222211 1234589999999
Q ss_pred HHHHHhhhcCCCCcEEEEEe--CcEEEEEEC
Q psy13360 204 VFTLQRLLENKENPVELKIS--NNQIKIIFS 232 (1161)
Q Consensus 204 L~eL~klL~~~~~~V~i~~~--~~~l~f~~~ 232 (1161)
+..++.+.......|.++++ +.=+.|+++
T Consensus 222 l~~~l~f~~~~~~~v~i~~~~~g~Pl~~~~~ 252 (266)
T 3a1j_A 222 FRGLLSFAESANLNLSIHFDAPGRPAIFTIK 252 (266)
T ss_dssp HHHHHHHHHHTTCEEEEEECSTTSCEEEEEE
T ss_pred HHHHHHHHHhcCCcEEEEECCCCccEEEEEe
Confidence 99966665333456888885 333555553
No 84
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.07 E-value=0.0013 Score=64.86 Aligned_cols=74 Identities=20% Similarity=0.328 Sum_probs=51.6
Q ss_pred ccchhHHhHHHhhHhhhcCCCCCeEEEEEecCC---cEEEEECCCccccccccCCCCCCCCcceEEEEeeecccCCCCCC
Q psy13360 377 GLHHFVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKN 453 (1161)
Q Consensus 377 gl~hlv~EivdNsiDe~~~g~~~~I~V~i~~dg---sisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t~l~ag~kfd~~ 453 (1161)
-|..++.++++||+..+- ....|.|.+..++ .++|.|||.|||.+..+. +|.....
T Consensus 47 ~l~~il~nll~NAi~~~~--~~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~------------~f~~~~~------- 105 (152)
T 3a0y_A 47 RIKQVLINLVQNAIEATG--ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEK------------IFSPFFT------- 105 (152)
T ss_dssp HHHHHHHHHHHHHHHHHC--TTCEEEEEEEECSSEEEEEEEEESCCCCGGGTTG------------GGSTTCC-------
T ss_pred HHHHHHHHHHHHHHHhcC--CCCEEEEEEEecCCEEEEEEEeCCCCcCHHHHHh------------Hhhhhcc-------
Confidence 588899999999998763 3457888887654 589999999999875543 2221111
Q ss_pred ceeeecccccchhhHhhhhcc
Q psy13360 454 SYKISGGLHGIGLSCVNGLSR 474 (1161)
Q Consensus 454 ~yk~sgGlhGvG~svvNalS~ 474 (1161)
...+-+|+|++.+..+.+
T Consensus 106 ---~~~~g~GlGL~i~~~~~~ 123 (152)
T 3a0y_A 106 ---TKTQGTGLGLSICRKIIE 123 (152)
T ss_dssp ---CC--CCCCSHHHHHHHHH
T ss_pred ---CCCCCCCcCHHHHHHHHH
Confidence 112348999999987664
No 85
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=96.96 E-value=0.00067 Score=78.85 Aligned_cols=89 Identities=24% Similarity=0.293 Sum_probs=59.2
Q ss_pred CccchhHHhHHHhhHhhhcCCCC------CeEEEEEecCC---cEEEEECCCccccccccCCCCCCCCcceEEEEeeecc
Q psy13360 376 TGLHHFVFEILDNAIDESLAGYC------TKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHA 446 (1161)
Q Consensus 376 ~gl~hlv~EivdNsiDe~~~g~~------~~I~V~i~~dg---sisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t~l~a 446 (1161)
.-|.+++.++|+||+.....|+. ..|.|++..++ .|+|.|+|.|||-+..+. +|....+
T Consensus 237 ~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~------------iF~~f~~ 304 (388)
T 1gkz_A 237 MPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDR------------VMDYHFT 304 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTT------------TTSTTCC
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHH------------hcCcccc
Confidence 35899999999999998876542 27999887654 599999999999876554 3433333
Q ss_pred cCC-----------CCC-----CceeeecccccchhhHhhhhccEE
Q psy13360 447 GGK-----------FNK-----NSYKISGGLHGIGLSCVNGLSRFL 476 (1161)
Q Consensus 447 g~k-----------fd~-----~~yk~sgGlhGvG~svvNalS~~~ 476 (1161)
+.+ |+. .......+-.|+|+++|..+.+.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~ 350 (388)
T 1gkz_A 305 TAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYL 350 (388)
T ss_dssp CC-------------------------CCSCSSCHHHHHHHHHHHT
T ss_pred cCCCcccccccccchhhcccccccCCCCcCCccCCHHHHHHHHHHh
Confidence 322 110 001111234799999999988754
No 86
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=96.92 E-value=0.002 Score=63.54 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=53.6
Q ss_pred CccchhHHhHHHhhHhhhcCCCCCeEEEEEecCC---cEEEEECCCccccccccCCCCCCCCcceEEEEeeecccCCCCC
Q psy13360 376 TGLHHFVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNK 452 (1161)
Q Consensus 376 ~gl~hlv~EivdNsiDe~~~g~~~~I~V~i~~dg---sisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t~l~ag~kfd~ 452 (1161)
.-|.+++.++|+||+..+.. .|.|.+..++ .++|.|||.|||.+..+. +|.....+.
T Consensus 43 ~~l~~il~nLl~NAi~~~~~----~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~------------~f~~~~~~~---- 102 (152)
T 1id0_A 43 NDFVEVMGNVLDNACKYCLE----FVEISARQTDEHLYIVVEDDGPGIPLSKREV------------IFDRGQRVD---- 102 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCSS----EEEEEEEECSSCEEEEEEESSSCCCGGGTTG------------GGSCCCCTT----
T ss_pred HHHHHHHHHHHHHHHHhCcC----eEEEEEEecCCEEEEEEEeCCCCcCHHHHHH------------Hhccceecc----
Confidence 35888899999999987632 7888887654 589999999999876543 222222211
Q ss_pred CceeeecccccchhhHhhhhccEE
Q psy13360 453 NSYKISGGLHGIGLSCVNGLSRFL 476 (1161)
Q Consensus 453 ~~yk~sgGlhGvG~svvNalS~~~ 476 (1161)
.+.+-+|+|++.+..+.+.+
T Consensus 103 ----~~~~g~GlGL~i~~~~~~~~ 122 (152)
T 1id0_A 103 ----TLRPGQGVGLAVAREITEQY 122 (152)
T ss_dssp ----CCCTTCCSCHHHHHHHHHHT
T ss_pred ----CCCCCcccCHHHHHHHHHHc
Confidence 11245899999998886543
No 87
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=96.85 E-value=0.0012 Score=65.60 Aligned_cols=76 Identities=24% Similarity=0.362 Sum_probs=44.4
Q ss_pred ccchhHHhHHHhhHhhhcCCCCCeEEEEEecCC-------------cEEEEECCCccccccccCCCCCCCCcceEEEEee
Q psy13360 377 GLHHFVFEILDNAIDESLAGYCTKINVTIYSDN-------------SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTE 443 (1161)
Q Consensus 377 gl~hlv~EivdNsiDe~~~g~~~~I~V~i~~dg-------------sisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t~ 443 (1161)
-|.+++.++++||+..+..+ ...|.|.+..++ .|+|.|||.|||.+..+. +|..
T Consensus 48 ~l~~il~nLl~NAik~~~~~-~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~------------lf~~ 114 (160)
T 1r62_A 48 QIEQVLLNIVRNALQALGPE-GGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDT------------LFYP 114 (160)
T ss_dssp HHHHHHHHHHHHHHHHHGGG-CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC-----------------------
T ss_pred HHHHHHHHHHHHHHHHhhcc-CCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHH------------hhCc
Confidence 48889999999999877532 457888776532 488999999999775543 3433
Q ss_pred ecccCCCCCCceeeecccccchhhHhhhhccE
Q psy13360 444 LHAGGKFNKNSYKISGGLHGIGLSCVNGLSRF 475 (1161)
Q Consensus 444 l~ag~kfd~~~yk~sgGlhGvG~svvNalS~~ 475 (1161)
...+. .+-+|+|++.+..+.+.
T Consensus 115 ~~~~~----------~~g~GlGL~i~~~~~~~ 136 (160)
T 1r62_A 115 MVSGR----------EGGTGLGLSIARNLIDQ 136 (160)
T ss_dssp -------------------CHHHHHHHHHHHH
T ss_pred cccCC----------CCCCccCHHHHHHHHHH
Confidence 33211 13489999999988754
No 88
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=96.81 E-value=0.0011 Score=66.46 Aligned_cols=78 Identities=18% Similarity=0.214 Sum_probs=53.6
Q ss_pred ccchhHHhHHHhhHhhhcCCCCCeEEEEEecCC---cEEEEECCCccccccccCCCCCCCCcceEEEEeeecccCCCCCC
Q psy13360 377 GLHHFVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKN 453 (1161)
Q Consensus 377 gl~hlv~EivdNsiDe~~~g~~~~I~V~i~~dg---sisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t~l~ag~kfd~~ 453 (1161)
-|..++.++|+||+..+ ...|.|.+..++ .|+|.|||.|||.+..+. +|...+.+.+-
T Consensus 47 ~l~~il~nll~NAik~~----~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~~------------~f~~f~~~~~~--- 107 (161)
T 1bxd_A 47 SIKRAVANMVVNAARYG----NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKH------------LFQPFVRGDSA--- 107 (161)
T ss_dssp HHHHHHHHHHHHHHTTC----CSCEEEEEEEETTEEEEEEEEESSCSCTTGGGC------------SSCCCCCCSCC---
T ss_pred HHHHHHHHHHHHHHhhc----CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHH------------hCCCceeCCCC---
Confidence 47888888888888765 467888877543 489999999999876654 34333332211
Q ss_pred ceeeecccccchhhHhhhhccEE
Q psy13360 454 SYKISGGLHGIGLSCVNGLSRFL 476 (1161)
Q Consensus 454 ~yk~sgGlhGvG~svvNalS~~~ 476 (1161)
...+-+|+|++++..+.+.+
T Consensus 108 ---~~~~g~GlGL~i~~~~~~~~ 127 (161)
T 1bxd_A 108 ---RTISGTGLGLAIVQRIVDNH 127 (161)
T ss_dssp ---CCCCCCSCCCCTTHHHHHHH
T ss_pred ---CCCCCcccCHHHHHHHHHHc
Confidence 11234899999888776543
No 89
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=96.80 E-value=0.001 Score=65.73 Aligned_cols=79 Identities=27% Similarity=0.379 Sum_probs=50.3
Q ss_pred CccchhHHhHHHhhHhhhcCCCCCeEEEEEecCC---cEEEEECCCccccccccCCCCCCCCcceEEEEeeecccCCCCC
Q psy13360 376 TGLHHFVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNK 452 (1161)
Q Consensus 376 ~gl~hlv~EivdNsiDe~~~g~~~~I~V~i~~dg---sisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t~l~ag~kfd~ 452 (1161)
.-|.+++.++|+||+..+..| .|.|.+..++ .|+|.|||.|||.+..+. +|.....+..
T Consensus 45 ~~l~~il~nLl~NA~~~~~~~---~I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~------------if~~f~~~~~--- 106 (150)
T 1ysr_A 45 AGLRLAVDNAIANAVKHGGAT---LVQLSAVSSRAGVEIAIDDNGSGVPEGERQV------------VFERFSRGST--- 106 (150)
T ss_dssp HHHHHHHHHHHHHHHHTTCCS---EEEEEEEEETTEEEEEEEESSSCCCGGGHHH------------HHTSCC-------
T ss_pred HHHHHHHHHHHHHHHhcCCCc---EEEEEEEecCCEEEEEEEECCCCCCHHHHHH------------HhcccccCCC---
Confidence 358889999999999875433 7888876543 589999999999876543 3332222111
Q ss_pred CceeeecccccchhhHhhhhccEE
Q psy13360 453 NSYKISGGLHGIGLSCVNGLSRFL 476 (1161)
Q Consensus 453 ~~yk~sgGlhGvG~svvNalS~~~ 476 (1161)
...+-+|+|++++..+.+.+
T Consensus 107 ----~~~~g~GlGL~i~~~~~~~~ 126 (150)
T 1ysr_A 107 ----ASHSGSGLGLALVAQQAQLH 126 (150)
T ss_dssp -----------CCCHHHHHHHHHT
T ss_pred ----CCCCCCCcCHHHHHHHHHHc
Confidence 11234799999999887643
No 90
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C
Probab=96.74 E-value=0.26 Score=53.87 Aligned_cols=199 Identities=9% Similarity=0.096 Sum_probs=130.7
Q ss_pred cHHHHHHHHHHhhccccCCCchhhhccEEEEEECCeEEEEEeccee-EEEEEeeecc-----cCCc-eEEEEechhHHHH
Q psy13360 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEV-QITTYTAVGY-----GNSS-INIIVAARKFIDI 80 (1161)
Q Consensus 8 ~k~~L~~aL~~v~~~v~~k~~~piL~~Iliea~~~~L~ltatD~e~-~i~~~i~a~~-----~~~~-G~v~V~ak~l~~I 80 (1161)
+-+.|.++|+.+ .++ ..+.+++.+++|.+++.|..+ .+...++.+. .+.+ .++.|+-..|.++
T Consensus 11 ~a~~l~~il~ai-~l~---------~ea~~~~s~~Gi~l~a~Ds~v~~v~l~l~~~~F~~Y~~~~~~~~~gi~l~~l~k~ 80 (263)
T 3a1j_C 11 NVRNLSTILKAI-HFR---------EHATCFATKNGIKVTVENAKCVQANAFIQAGIFQEFKVQEESVTFRINLTVLLDC 80 (263)
T ss_dssp CTHHHHHHHHTT-CSS---------SEEEEEEETTEEEEEEEETTTEEEEEEEEGGGSSEEEESSSCEEEEEEHHHHHHH
T ss_pred CHHHHHHHHhhe-ecC---------cEEEEEEcCCeEEEEEEeCCEEEEEEEECHHHCceEEEcCCCcEEEEEhHHHHHH
Confidence 566777777777 664 468999999999999999543 3345555432 2334 7999999999999
Q ss_pred HhcCCCC----ccEEEE--Ee--Cc--EEEEEECc--EEEEEccCCCCCCCCccCCC-CcceEEEEcHHHHHHHHHhhcc
Q psy13360 81 LRSLPET----EKVTIY--IE--NK--HMFIKSGK--SKFTLQTLDAKEYPIMTLNS-KYDFEFTLSQKTLKCILNMVYF 147 (1161)
Q Consensus 81 vk~Lp~~----~~I~ie--~~--~~--~l~I~sG~--~~~~l~~~~~edfP~~~~~~-~~~~~~~i~~~~L~~aI~~v~~ 147 (1161)
++....+ +.++++ .. ++ .+.+..+. .+|+|++++++.-|+++... ....++.+++..|.++++-...
T Consensus 81 L~~~~~~~~~~d~~~l~i~~~~~~~~l~l~~e~~~~~~~~~l~~~~~~~~~d~~f~~~~~~~~v~m~s~~l~~~~~dl~~ 160 (263)
T 3a1j_C 81 LSIFGSSPMPGTLTALRMCYQGYGYPLMLFLEEGGVVTVCKINTQEPEETLDFDFCSTNVINKIILQSEGLREAFSELDM 160 (263)
T ss_dssp HTTTCSCCCTTCCCEEEEEECSTTCCEEEEEEETTEEEEEEECCBCCCCCCCCCCCTTTEEEEEEEEGGGGHHHHHTSCT
T ss_pred HHHhcCCcCCCCceEEEEEECCCCCcEEEEEEeCCeEEEEEEEEEcCCcccCcccCcccceEEEEEehHHHHHHHHHHhc
Confidence 9999765 445555 33 34 45555554 68999999998778776542 2234899999999999998854
Q ss_pred cccccccccceeeEEEEEECC--EEEEEEecceEEEEEEEecCCC------CCCcceEEEehhhHHHHHhhhcCCCCcEE
Q psy13360 148 SIAQQDIRYYLNGLLLSFQKK--NIIAVSSDGHRLTYYQVNIDKK------FSSCSDIIIPRKTVFTLQRLLENKENPVE 219 (1161)
Q Consensus 148 a~s~~~trpiL~GV~~~~~~~--~L~lvATDg~RLa~~~i~~~~~------~~~~~~viIP~k~L~eL~klL~~~~~~V~ 219 (1161)
. + + -|.|.++++ .+.+.|.=-.--+...++.... ..++....-.-+.|..+.|.++- ...|.
T Consensus 161 ~-~-d-------~v~i~~~~~~p~~~~~~~Gd~g~~~i~~~~~~~~~~~~~~~~~~~~~y~l~yL~~~~ka~~~-s~~v~ 230 (263)
T 3a1j_C 161 T-S-E-------VLQITMSPDKPYFRLSTFGNAGSSHLDYPKDSDLMEAFHCNQTQVNRYKISLLKPSTKALVL-SCKVS 230 (263)
T ss_dssp T-S-S-------EEEEEECSSSSSEEEEEEETTEEEEEEECTTCSSEEEEEECSCEEEEEEHHHHTTHHHHHHH-CSEEE
T ss_pred c-C-C-------eEEEEEEcCCCEEEEEEEcCCccEEEEEcCCCCeEEEEEeCChhhcEEeHHHHHHHHhhhhh-cCEEE
Confidence 2 2 1 155555555 5555554111112223222111 01234677777888888887764 45788
Q ss_pred EEEeCcE
Q psy13360 220 LKISNNQ 226 (1161)
Q Consensus 220 i~~~~~~ 226 (1161)
|.++.+.
T Consensus 231 i~~~~~~ 237 (263)
T 3a1j_C 231 IRTDNRG 237 (263)
T ss_dssp EEEETTC
T ss_pred EEECCCe
Confidence 8888764
No 91
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=96.73 E-value=0.002 Score=61.83 Aligned_cols=43 Identities=30% Similarity=0.529 Sum_probs=32.1
Q ss_pred ccchhHHhHHHhhHhhhcCCCCCeEEEEEecCC--cEEEEECCCcccc
Q psy13360 377 GLHHFVFEILDNAIDESLAGYCTKINVTIYSDN--SISISDNGRGIPI 422 (1161)
Q Consensus 377 gl~hlv~EivdNsiDe~~~g~~~~I~V~i~~dg--sisV~DnGrGIPv 422 (1161)
-|.+++.|+++||+..+ ....|.|++..++ .|+|.|||.|||.
T Consensus 43 ~l~~il~nll~NA~k~~---~~~~i~i~~~~~~~~~i~v~D~G~gi~~ 87 (129)
T 3zxo_A 43 QAEAVVREAVSNAVRHA---AASTLTVRVKVDDDLCIEVTDNGRGMPD 87 (129)
T ss_dssp HHHHHHHHHHHHCCCCS---SCCEEEEEEEESSEEEEEEEECCCCCTT
T ss_pred HHHHHHHHHHHHHHHhC---CCceEEEEEEEcCCEEEEEecCCCCCCc
Confidence 35666677777777655 3468999888765 5899999999984
No 92
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=96.70 E-value=0.0018 Score=70.13 Aligned_cols=84 Identities=20% Similarity=0.310 Sum_probs=53.8
Q ss_pred CccchhHHhHHHhhHhhhcCC-CCCeEEEEEecCC---cEEEEECCCccccccccCCCCCCCCcceEEEEeeecccCCCC
Q psy13360 376 TGLHHFVFEILDNAIDESLAG-YCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFN 451 (1161)
Q Consensus 376 ~gl~hlv~EivdNsiDe~~~g-~~~~I~V~i~~dg---sisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t~l~ag~kfd 451 (1161)
.-|.+++..+|+||++....+ ....|.|.+..++ .|+|.|||.|||.+..+. +|...+.+..
T Consensus 137 ~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~------------if~~f~~~~~-- 202 (258)
T 2c2a_A 137 TRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDR------------IFEQFYRVDS-- 202 (258)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTG------------GGSTTCCCC---
T ss_pred HHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecCCCeEEEEEEecCCCCCHHHHHh------------hccccccCCC--
Confidence 458889999999999876543 2356888776533 489999999999876654 4433332211
Q ss_pred CCceeeecccccchhhHhhhhccE
Q psy13360 452 KNSYKISGGLHGIGLSCVNGLSRF 475 (1161)
Q Consensus 452 ~~~yk~sgGlhGvG~svvNalS~~ 475 (1161)
..-...+| .|+|+++|..+.+.
T Consensus 203 -~~~~~~~G-~GLGL~i~~~iv~~ 224 (258)
T 2c2a_A 203 -SLTYEVPG-TGLGLAITKEIVEL 224 (258)
T ss_dssp ----------CCCTHHHHHHHHHH
T ss_pred -CCCCCCCC-cchHHHHHHHHHHH
Confidence 10011123 79999999887753
No 93
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=96.63 E-value=0.0028 Score=64.63 Aligned_cols=81 Identities=23% Similarity=0.327 Sum_probs=52.0
Q ss_pred ccchhHHhHHHhhHhhhcCCCCCeEEEEE--ecCC---cEEEEECCCccccccccCCCCCCCCcceEEEEeeecccCCCC
Q psy13360 377 GLHHFVFEILDNAIDESLAGYCTKINVTI--YSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFN 451 (1161)
Q Consensus 377 gl~hlv~EivdNsiDe~~~g~~~~I~V~i--~~dg---sisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t~l~ag~kfd 451 (1161)
-|..++.++|+||+..+..+ ..|.|.+ ..++ .|+|.|||.|||.+..+. +|.....+..
T Consensus 43 ~l~~il~nLl~NAi~~~~~~--~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~------------lf~~~~~~~~-- 106 (177)
T 3sl2_A 43 KITQVLDNIISNALKYSPEG--GHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEK------------VFDRFYRVDK-- 106 (177)
T ss_dssp HHHHHHHHHHHHHHHTCCTT--CCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTT------------TTSTTCCCC---
T ss_pred HHHHHHHHHHHHHHHhCCCC--CeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHH------------HHhhhccCCC--
Confidence 48899999999999877544 3455554 5543 589999999999875543 2332322211
Q ss_pred CCceeeecccccchhhHhhhhccE
Q psy13360 452 KNSYKISGGLHGIGLSCVNGLSRF 475 (1161)
Q Consensus 452 ~~~yk~sgGlhGvG~svvNalS~~ 475 (1161)
......+-+|+|++.+..+.+.
T Consensus 107 --~~~~~~~g~GlGL~iv~~~~~~ 128 (177)
T 3sl2_A 107 --ARTRKLGGTGLGLAIAKEMVQA 128 (177)
T ss_dssp -------CCCCCCHHHHHHHHHHH
T ss_pred --CCCCCCCCCCcCHHHHHHHHHH
Confidence 1122334589999999887754
No 94
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=96.55 E-value=0.0017 Score=75.64 Aligned_cols=88 Identities=26% Similarity=0.400 Sum_probs=60.4
Q ss_pred ccchhHHhHHHhhHhhhcCCC-----CCeEEEEEecCC---cEEEEECCCccccccccCCCCCCCCcceEEEEeeecccC
Q psy13360 377 GLHHFVFEILDNAIDESLAGY-----CTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGG 448 (1161)
Q Consensus 377 gl~hlv~EivdNsiDe~~~g~-----~~~I~V~i~~dg---sisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t~l~ag~ 448 (1161)
-|++++.++|+||+.....|. ...|.|++..++ .|+|.|+|.|||-+..+. +|...+.+.
T Consensus 230 ~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~------------if~~f~~~~ 297 (394)
T 2e0a_A 230 HLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDR------------LFSYTYSTA 297 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHH------------HTSTTCCSS
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHH------------HhCcCccCC
Confidence 589999999999999887654 446999887654 599999999999886654 444444432
Q ss_pred CCC--CCceeeecccccchhhHhhhhccEE
Q psy13360 449 KFN--KNSYKISGGLHGIGLSCVNGLSRFL 476 (1161)
Q Consensus 449 kfd--~~~yk~sgGlhGvG~svvNalS~~~ 476 (1161)
+-. ++......+-.|+|+++|..+.+.+
T Consensus 298 ~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~ 327 (394)
T 2e0a_A 298 PTPVMDNSRNAPLAGFGYGLPISRLYAKYF 327 (394)
T ss_dssp CCC------CCCSSCSSCHHHHHHHHHHHT
T ss_pred CCCCcCcCCCCCCCCcccCHHHHHHHHHHh
Confidence 210 0001112244899999999888653
No 95
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=96.53 E-value=0.0015 Score=76.16 Aligned_cols=89 Identities=20% Similarity=0.324 Sum_probs=57.7
Q ss_pred CccchhHHhHHHhhHhhhcCCCC-----CeEEEEEecCC---cEEEEECCCccccccccCCCCCCCCcceEEEEeeeccc
Q psy13360 376 TGLHHFVFEILDNAIDESLAGYC-----TKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAG 447 (1161)
Q Consensus 376 ~gl~hlv~EivdNsiDe~~~g~~-----~~I~V~i~~dg---sisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t~l~ag 447 (1161)
.-|.+++.++|+||+.....|.. ..|.|.+..++ .|+|.|+|.|||-+..+. +|...+.+
T Consensus 230 ~~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~------------iF~~f~~~ 297 (394)
T 2btz_A 230 SHLYHMLFELFKNAMRATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIER------------LFSYMYST 297 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHH------------HTCTTTTC
T ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHH------------HhcccccC
Confidence 35899999999999998876652 46888887654 599999999999876654 44444433
Q ss_pred CCCCC-CceeeecccccchhhHhhhhccEE
Q psy13360 448 GKFNK-NSYKISGGLHGIGLSCVNGLSRFL 476 (1161)
Q Consensus 448 ~kfd~-~~yk~sgGlhGvG~svvNalS~~~ 476 (1161)
.+-.. +.-....+-.|+|+++|..+.+.+
T Consensus 298 ~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~ 327 (394)
T 2btz_A 298 APTPQPGTGGTPLAGFGYGLPISRLYAKYF 327 (394)
T ss_dssp CC--------------CCHHHHHHHHHHHT
T ss_pred CCCCCcccCCCCCCCccCCHHHHHHHHHHh
Confidence 22100 001112234799999999888654
No 96
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=96.51 E-value=0.0054 Score=59.11 Aligned_cols=44 Identities=23% Similarity=0.163 Sum_probs=33.7
Q ss_pred ccchhHHhHHHhhHhhhcCCCCCeEEEEEecCC---cEEEEECCCccccc
Q psy13360 377 GLHHFVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPID 423 (1161)
Q Consensus 377 gl~hlv~EivdNsiDe~~~g~~~~I~V~i~~dg---sisV~DnGrGIPv~ 423 (1161)
-|..++.|+++||+..+- ...|.|.+..++ .++|.|||.|||.+
T Consensus 40 ~l~~il~nll~Na~k~~~---~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~ 86 (128)
T 3ehg_A 40 ILSMCLKEAVTNVVKHSQ---AKTCRVDIQQLWKEVVITVSDDGTFKGEE 86 (128)
T ss_dssp HHHHHHHHHHHHHHHHTC---CSEEEEEEEEETTEEEEEEEESSCCCSCS
T ss_pred HHHHHHHHHHHHHHhcCC---CcEEEEEEEEeCCEEEEEEEECCcCcCcc
Confidence 466777888888887653 468888887643 58999999999954
No 97
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=96.45 E-value=0.0025 Score=74.48 Aligned_cols=88 Identities=22% Similarity=0.357 Sum_probs=60.4
Q ss_pred ccchhHHhHHHhhHhhhcCCC-----CCeEEEEEecCC---cEEEEECCCccccccccCCCCCCCCcceEEEEeeecccC
Q psy13360 377 GLHHFVFEILDNAIDESLAGY-----CTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGG 448 (1161)
Q Consensus 377 gl~hlv~EivdNsiDe~~~g~-----~~~I~V~i~~dg---sisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t~l~ag~ 448 (1161)
-|.+++.++|+||+.....|. ...|.|.+..++ .|+|.|+|.|||-+..+. +|...+.+.
T Consensus 243 ~L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~------------if~~f~~~~ 310 (407)
T 2q8g_A 243 HLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDR------------LFNYMYSTA 310 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGG------------GGCTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHH------------HhCccccCC
Confidence 489999999999999876554 346888887644 589999999999886655 455444433
Q ss_pred CCCC--CceeeecccccchhhHhhhhccEE
Q psy13360 449 KFNK--NSYKISGGLHGIGLSCVNGLSRFL 476 (1161)
Q Consensus 449 kfd~--~~yk~sgGlhGvG~svvNalS~~~ 476 (1161)
+-.. .......+-+|+|+++|..+.+.+
T Consensus 311 ~~~~~~~~~~~~~~G~GLGL~Ivr~i~~~~ 340 (407)
T 2q8g_A 311 PRPRVETSRAVPLAGFGYGLPISRLYAQYF 340 (407)
T ss_dssp CCCCSSCCSCCCSSCTTCHHHHHHHHHHHT
T ss_pred CCCCccccCCCCCCCcCCCHHHHHHHHHHh
Confidence 2100 001112234799999999887653
No 98
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=96.33 E-value=0.002 Score=75.69 Aligned_cols=88 Identities=20% Similarity=0.330 Sum_probs=58.0
Q ss_pred ccchhHHhHHHhhHhhhcCCC------CCeEEEEEecCC---cEEEEECCCccccccccCCCCCCCCcceEEEEeeeccc
Q psy13360 377 GLHHFVFEILDNAIDESLAGY------CTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAG 447 (1161)
Q Consensus 377 gl~hlv~EivdNsiDe~~~g~------~~~I~V~i~~dg---sisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t~l~ag 447 (1161)
-|.+++.++|+||+.....|. ...|.|.+..++ .|+|.|+|.|||-+..+. +|.....+
T Consensus 253 ~L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~------------iF~~f~~~ 320 (419)
T 1y8o_A 253 HLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDR------------LFNYMYST 320 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGG------------GGCTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHH------------HhCccccc
Confidence 489999999999999876554 447999887654 589999999999887665 45444443
Q ss_pred CCCC--CCceeeecccccchhhHhhhhccEE
Q psy13360 448 GKFN--KNSYKISGGLHGIGLSCVNGLSRFL 476 (1161)
Q Consensus 448 ~kfd--~~~yk~sgGlhGvG~svvNalS~~~ 476 (1161)
.+-. ++.-....+-.|+|+++|..+.+.+
T Consensus 321 ~~~~~~~~~~~~~~~G~GLGL~I~k~iv~~~ 351 (419)
T 1y8o_A 321 APRPSLEPTRAAPLAGFGYGLPISRLYARYF 351 (419)
T ss_dssp ------------CC--CTTHHHHHHHHHHHT
T ss_pred CCCCCccccCCCCcCCeecCHHHHHHHHHHh
Confidence 2210 0001112234799999999887654
No 99
>3g65_A Cell cycle checkpoint control protein RAD9A; PCNA, DNA binding clamp, DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein; 2.90A {Homo sapiens}
Probab=96.31 E-value=0.15 Score=56.98 Aligned_cols=215 Identities=10% Similarity=0.130 Sum_probs=135.0
Q ss_pred CceEEEc-cHHHHHHHHHHhhccccCCCchhhhccEEEEEECCeEEEEEecceeEEEEEeee--cc-----cC----Cce
Q psy13360 1 MQLVVNT-EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAV--GY-----GN----SSI 68 (1161)
Q Consensus 1 Mk~~v~i-~k~~L~~aL~~v~~~v~~k~~~piL~~Iliea~~~~L~ltatD~e~~i~~~i~a--~~-----~~----~~G 68 (1161)
|++.+.- +-+.|.++|+.++++. ..++|++.+++|.|.|.|...+.-+.+.. .. .. +.-
T Consensus 1 M~~~i~g~~~K~f~kai~~Lskig---------dEl~~e~~~dgL~LravNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~ 71 (296)
T 3g65_A 1 MKCLVTGGNVKVLGKAVHSLSRIG---------DELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQYQAATPGQDLL 71 (296)
T ss_dssp CEEEEETHHHHHHHHHHHHHHTTC---------SEEEEEEETTEEEEEEECTTSCEEEEEEETTSSCCCCCC-------C
T ss_pred CEEEEecccHHHHHHHHHHHHhhC---------ceEEEEEcCCeEEEEEECCcceEEEEEEeChHHhhheecCCCCCccE
Confidence 7776542 2356677888888765 68999999999999999987666554432 11 01 123
Q ss_pred EEEEechhHHHHHhcCCCC----ccEEEEEe--CcEEEEE--EC---cEEEEEccCCCCCCCCccCCCCcceEEEEcHHH
Q psy13360 69 NIIVAARKFIDILRSLPET----EKVTIYIE--NKHMFIK--SG---KSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKT 137 (1161)
Q Consensus 69 ~v~V~ak~l~~Ivk~Lp~~----~~I~ie~~--~~~l~I~--sG---~~~~~l~~~~~edfP~~~~~~~~~~~~~i~~~~ 137 (1161)
.+.|+.|.+..+.|++... +.+.|..+ .+.+.|+ +. ..+|+|+..+.+.-...-........+.+++..
T Consensus 72 ~c~i~~K~ll~vfr~~~~~d~~ve~c~i~l~~~~~rl~i~l~ck~gi~Kt~~l~~~~~~~l~a~~~~~~~~n~~~i~~~~ 151 (296)
T 3g65_A 72 RCKILMKSFLSVFRSLAMLEKTVEKCCISLNGRSSRLVVQLHCKFGVRKTHNLSFQDCESLQAVFDPASCPHMLRAPARV 151 (296)
T ss_dssp CEEEEHHHHHTTTSSTTC----CCEEEEEECCC---EEEEEECGGGCEEEEEECCCCCCCCCCCCCGGGCSCEEEEEHHH
T ss_pred EEEEEhHHHHHHhccccccccceeEEEEEEeCCCCEEEEEEEeCCCeEEEEEEEeEeccccccccCchhCcEEEEEchHH
Confidence 5899999999999998642 13455554 4555554 33 458999988665443321111235689999999
Q ss_pred HHHHHHhhcccccccccccceeeEEEEEE-CCEEEEEEe-c----ce-EEEEEEEecCCC------CCCcceEEEehhhH
Q psy13360 138 LKCILNMVYFSIAQQDIRYYLNGLLLSFQ-KKNIIAVSS-D----GH-RLTYYQVNIDKK------FSSCSDIIIPRKTV 204 (1161)
Q Consensus 138 L~~aI~~v~~a~s~~~trpiL~GV~~~~~-~~~L~lvAT-D----g~-RLa~~~i~~~~~------~~~~~~viIP~k~L 204 (1161)
|.+++...... ..=|-|.+. ++.+.+.+- | +- +-...++.++.+ .+++..+++.-|-+
T Consensus 152 l~e~l~~f~~~---------~eevtl~~~~~~~v~~~s~~e~~~d~~~~~~~Tel~i~~~ef~~~~v~~~~~itf~lKef 222 (296)
T 3g65_A 152 LGEAVLPFSPA---------LAEVTLGIGRGRRVILRSYHEEEADSTAKAMVTEMCLGEEDFQQLQAQEGVAITFCLKEF 222 (296)
T ss_dssp HHHHSTTSCTT---------CCEEEEEEETTTEEEEEECCC-----CCCCCEEEEEECGGGCSEEECCTTCEEEEEHHHH
T ss_pred HHHHHHhCcCC---------cceEEEEECCCCeEEEEEeccccccccCceEEEEEEEChhHheeEecCCCcEEEEEHHHH
Confidence 99998876432 223666666 566666664 1 11 223333333221 22356899999999
Q ss_pred HHHHhhhcCCCCcEEEEEeC--cEEEEEECc
Q psy13360 205 FTLQRLLENKENPVELKISN--NQIKIIFSN 233 (1161)
Q Consensus 205 ~eL~klL~~~~~~V~i~~~~--~~l~f~~~~ 233 (1161)
+.++.+....+.+|.++++. +=+.|+.++
T Consensus 223 rail~~ae~~~~~i~i~f~~pG~Pl~~~~~~ 253 (296)
T 3g65_A 223 RGLLSFAESANLNLSIHFDAPGRPAIFTIKD 253 (296)
T ss_dssp HHHHHHHHHTTCEEEEECCSTTSCEEEEEEC
T ss_pred HHHHHHHHhcCCeEEEEECCCCCcEEEEEeC
Confidence 99998876555678888873 335555543
No 100
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=96.27 E-value=0.0057 Score=58.26 Aligned_cols=44 Identities=20% Similarity=0.384 Sum_probs=32.9
Q ss_pred ccchhHHhHHHhhHhhhcCCCCCeEEEEEecCC--cEEEEECCCccccc
Q psy13360 377 GLHHFVFEILDNAIDESLAGYCTKINVTIYSDN--SISISDNGRGIPID 423 (1161)
Q Consensus 377 gl~hlv~EivdNsiDe~~~g~~~~I~V~i~~dg--sisV~DnGrGIPv~ 423 (1161)
-|..++.|+++||+..+- ...|.|.+..++ .++|.|||.|||.+
T Consensus 39 ~l~~il~nll~Na~k~~~---~~~i~i~~~~~~~~~i~v~D~G~gi~~~ 84 (124)
T 3zxq_A 39 HAEAVLREAVSNAVRHAN---ATSLAINVSVEDDVRVEVVDDGVGISGD 84 (124)
T ss_dssp HHHHHHHHHHHHHHTCTT---CCEEEEEEEEEEEEEEEEEECCCSSCGG
T ss_pred HHHHHHHHHHHHHHHhCC---CCEEEEEEEeCCCEEEEEEECCCCCCcc
Confidence 466777777777776553 357888887654 68999999999854
No 101
>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A
Probab=96.25 E-value=0.074 Score=58.40 Aligned_cols=167 Identities=13% Similarity=0.080 Sum_probs=117.1
Q ss_pred ceeeEEEEEECCEEEEEEecceEEEEEEEecCCCC------C----CcceEEEehhhHHHHHhhhcCCC---CcEEEEEe
Q psy13360 157 YLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF------S----SCSDIIIPRKTVFTLQRLLENKE---NPVELKIS 223 (1161)
Q Consensus 157 iL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~~~------~----~~~~viIP~k~L~eL~klL~~~~---~~V~i~~~ 223 (1161)
+..-++|++.+++|.+.|.|.-+.+...+.+.... + +...+-|+.+.+..+.|...+.+ +.+.|.++
T Consensus 23 l~~e~~~~~~~~gl~l~a~d~S~va~v~l~~~~~fF~~Y~~~~~~~~~~~~gv~~k~l~kilk~~~~~d~~vd~~~i~~~ 102 (266)
T 3a1j_A 23 IGDELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQYQAATPGQDLLRCKILMKSFLSVFRSLAMLEKTVEKCCISLN 102 (266)
T ss_dssp TCSEEEEEEETTEEEEEEECTTSCEEEEEEECGGGSSEEECCCSSSCCCCEEEEHHHHHHHHCCHHHHHHHEEEEEEECC
T ss_pred hCCcEEEEEccCcEEEEEEcCcccEEEEEEEchHhhhheecCCCCCCcEEEEEEhhHHHHHhCCcccccccceEEEEEEc
Confidence 45669999999999999999999999888776421 1 13678899999988888765421 46777774
Q ss_pred --CcEEE--EEECc---EEEEEeecCCCCCCccccccC-CcceEEEEeHHHHHHHHHHhhccccCCcceEEEEEe-CCEE
Q psy13360 224 --NNQIK--IIFSN---IEIISKLIDGKFLDYKYVISN-KYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIK-PNYL 294 (1161)
Q Consensus 224 --~~~l~--f~~~~---~~~~~rli~g~fPdy~~vip~-~~~~~i~v~r~~L~~aL~Rv~~~s~~~~~~V~l~~~-~~~L 294 (1161)
++.+. |.+.+ .++..++++.+-.. -.+|. +++..++++...|.++++-....+++ |.+..+ ++++
T Consensus 103 ~~~~~l~~~~~~~~~~~k~~~l~l~d~~~~~--~~~~~~~~~~~i~~~s~~~~~~~~~~~~~~d~----v~i~~~~~~~v 176 (266)
T 3a1j_A 103 GRSSRLVVQLHCKFGVRKTHNLSFQDCESLQ--AVFDPASCPHMLRAPARVLGEAVLPFSPALAE----VTLGIGRGRRV 176 (266)
T ss_dssp TTCSEEEEEEEEGGGCEEEEEEECEECCCCC--CCCCGGGCSEEEEEEHHHHHHHHTTSCTTCCE----EEEEECGGGCE
T ss_pred CCCceEEEEEEccCCceEEEEEEEEcccccc--ceechhhCCceEEEChHHHHHHHHhCCCChhh----EEEEeCCCCEE
Confidence 44555 44444 56788888755432 23454 67999999999999999887766433 889999 9999
Q ss_pred EEEEEcCC---c--cccceeeee------eee-CCccceeeechhhhh
Q psy13360 295 KITVSSSN---R--EKASEELEI------NYN-GKDKNFIKFLIKIML 330 (1161)
Q Consensus 295 ~isa~d~~---~--g~~~E~i~~------~~~-Ge~~~ii~fn~~yLl 330 (1161)
.+++.... . ...+.++.+ .++ +++.. +.|..+||.
T Consensus 177 ~~~s~~~~~~~~~~~~~~t~~~~~~~e~~~~~~~~~~~-~tFslkyl~ 223 (266)
T 3a1j_A 177 ILRSYHEEEADSTAKAMVTEMCLGEEDFQQLQAQEGVA-ITFCLKEFR 223 (266)
T ss_dssp EEEEECCC-CCCSCCCCEEEEEECGGGCSEEECCTTCE-EEEEHHHHH
T ss_pred EEEEcccCccccccccceEEEEECHHHhhheecCCCCE-EEEEHHHHH
Confidence 99985422 1 222222322 233 45666 899999965
No 102
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=96.00 E-value=0.0041 Score=70.05 Aligned_cols=74 Identities=20% Similarity=0.326 Sum_probs=49.3
Q ss_pred ccchhHHhHHHhhHhhhcCCCCCeEEEEEecCC---cEEEEECCCccccccccCCCCCCCCcceEEEEeeecccCCCCCC
Q psy13360 377 GLHHFVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKN 453 (1161)
Q Consensus 377 gl~hlv~EivdNsiDe~~~g~~~~I~V~i~~dg---sisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t~l~ag~kfd~~ 453 (1161)
-|..++.++|+||+..+- ....|.|.+..++ .|+|.|||.|||.+..+. +|....++
T Consensus 244 ~l~~vl~nLl~NA~k~~~--~~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~------------if~~f~~~------ 303 (349)
T 3a0r_A 244 RIKQVLINLVQNAIEATG--ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEK------------IFSPFFTT------ 303 (349)
T ss_dssp HHHHHHHHHHTHHHHTTC--TTCCEEEEEEEETTEEEEEEEEESCCCCGGGGTT------------TSSSCCCC------
T ss_pred HHHHHHHHHHHHHHHhcc--CCCEEEEEEEecCCEEEEEEEECCCCCChHHHhh------------cCCCCccC------
Confidence 488899999999998763 3457888877543 589999999999886654 33322221
Q ss_pred ceeeecccccchhhHhhhhcc
Q psy13360 454 SYKISGGLHGIGLSCVNGLSR 474 (1161)
Q Consensus 454 ~yk~sgGlhGvG~svvNalS~ 474 (1161)
..+-+|+|+++|.-+-+
T Consensus 304 ----~~~g~GlGL~i~~~~v~ 320 (349)
T 3a0r_A 304 ----KTQGTGLGLSICRKIIE 320 (349)
T ss_dssp ----------CCCTHHHHHHH
T ss_pred ----CCCCccchHHHHHHHHH
Confidence 12347999999876653
No 103
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=95.99 E-value=0.0075 Score=65.36 Aligned_cols=76 Identities=21% Similarity=0.459 Sum_probs=53.7
Q ss_pred ccchhHHhHHHhhHhhhcCCCCCeEEEEEecCC---cEEEEECCCccccccccCCCCCCCCcceEEEEeeecccCCCCCC
Q psy13360 377 GLHHFVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKN 453 (1161)
Q Consensus 377 gl~hlv~EivdNsiDe~~~g~~~~I~V~i~~dg---sisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t~l~ag~kfd~~ 453 (1161)
-|..++.++|+||++.+..+ ..|.|.+..++ .|+|.|||.|||.+..+. +|....+
T Consensus 155 ~l~~il~nLl~NA~~~~~~~--~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~------------if~~~~~------- 213 (268)
T 4ew8_A 155 RLAQTLDHLVENALRQTPPG--GRVTLSARRALGEVRLDVSDTGRGVPFHVQAH------------IFDRFVG------- 213 (268)
T ss_dssp HHHHHHHHHHHHHHHHSCTT--CEEEEEEEECSSEEEEEEEESSCCCCHHHHTT------------TTSTTCC-------
T ss_pred HHHHHHHHHHHHHHHhCCCC--CEEEEEEEecCCEEEEEEEcCCCCCCHHHHHH------------HHHHHhc-------
Confidence 48889999999999876543 57888887654 689999999999876544 2222111
Q ss_pred ceeeecccccchhhHhhhhccEE
Q psy13360 454 SYKISGGLHGIGLSCVNGLSRFL 476 (1161)
Q Consensus 454 ~yk~sgGlhGvG~svvNalS~~~ 476 (1161)
...+-+|+|++++..+.+.+
T Consensus 214 ---~~~~g~GlGL~i~~~~~~~~ 233 (268)
T 4ew8_A 214 ---RDRGGPGLGLALVKALVELH 233 (268)
T ss_dssp ---CSSCCCTTHHHHHHHHHHHT
T ss_pred ---CCCCCCcccHHHHHHHHHHc
Confidence 11234799999988777543
No 104
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C
Probab=95.97 E-value=0.14 Score=56.12 Aligned_cols=178 Identities=8% Similarity=0.152 Sum_probs=120.6
Q ss_pred cHHHHHHHHHhhcccccccccccceeeEEEEEECCEEEEEEecceEEEEEEEecCCC------CCCc-ceEEEehhhHHH
Q psy13360 134 SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKK------FSSC-SDIIIPRKTVFT 206 (1161)
Q Consensus 134 ~~~~L~~aI~~v~~a~s~~~trpiL~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~~------~~~~-~~viIP~k~L~e 206 (1161)
++..|+++++.+ ..+ +-+.|+++++++.+.|-|+ +.+...+.++.. .+.+ ..+-|+-..+.+
T Consensus 11 ~a~~l~~il~ai-~l~---------~ea~~~~s~~Gi~l~a~Ds-~v~~v~l~l~~~~F~~Y~~~~~~~~~gi~l~~l~k 79 (263)
T 3a1j_C 11 NVRNLSTILKAI-HFR---------EHATCFATKNGIKVTVENA-KCVQANAFIQAGIFQEFKVQEESVTFRINLTVLLD 79 (263)
T ss_dssp CTHHHHHHHHTT-CSS---------SEEEEEEETTEEEEEEEET-TTEEEEEEEEGGGSSEEEESSSCEEEEEEHHHHHH
T ss_pred CHHHHHHHHhhe-ecC---------cEEEEEEcCCeEEEEEEeC-CEEEEEEEECHHHCceEEEcCCCcEEEEEhHHHHH
Confidence 677888888777 333 2389999999999999994 445555444432 1223 689999999999
Q ss_pred HHhhhcCC----C-CcEEEEEeC--c--EEEEEECc--EEEEEeecCCCC-CCccccccC-CcceEEEEeHHHHHHHHHH
Q psy13360 207 LQRLLENK----E-NPVELKISN--N--QIKIIFSN--IEIISKLIDGKF-LDYKYVISN-KYEKSFLVNRNKLLRSLQR 273 (1161)
Q Consensus 207 L~klL~~~----~-~~V~i~~~~--~--~l~f~~~~--~~~~~rli~g~f-Pdy~~vip~-~~~~~i~v~r~~L~~aL~R 273 (1161)
+++...++ + ..+++.+.+ + .+.|+.++ ..+..++++-+- |+++ ++. .....+.++...|.++++=
T Consensus 80 ~L~~~~~~~~~~d~~~l~i~~~~~~~~l~l~~e~~~~~~~~~l~~~~~~~~~d~~--f~~~~~~~~v~m~s~~l~~~~~d 157 (263)
T 3a1j_C 80 CLSIFGSSPMPGTLTALRMCYQGYGYPLMLFLEEGGVVTVCKINTQEPEETLDFD--FCSTNVINKIILQSEGLREAFSE 157 (263)
T ss_dssp HHTTTCSCCCTTCCCEEEEEECSTTCCEEEEEEETTEEEEEEECCBCCCCCCCCC--CCTTTEEEEEEEEGGGGHHHHHT
T ss_pred HHHHhcCCcCCCCceEEEEEECCCCCcEEEEEEeCCeEEEEEEEEEcCCcccCcc--cCcccceEEEEEehHHHHHHHHH
Confidence 99998764 2 245554554 3 35566566 557777887543 4442 221 2344999999999999999
Q ss_pred hhccccCCcceEEEEEeCC--EEEEEEEcCCccccceeeee------eee-CCccceeeechhhhh
Q psy13360 274 ISIISNDKLKGVRLVIKPN--YLKITVSSSNREKASEELEI------NYN-GKDKNFIKFLIKIML 330 (1161)
Q Consensus 274 v~~~s~~~~~~V~l~~~~~--~L~isa~d~~~g~~~E~i~~------~~~-Ge~~~ii~fn~~yLl 330 (1161)
+..++ + .|.+..+++ .+++++.+ +.|.++-.++. .++ +++.. ..|..+||.
T Consensus 158 l~~~~-d---~v~i~~~~~~p~~~~~~~G-d~g~~~i~~~~~~~~~~~~~~~~~~~-~~y~l~yL~ 217 (263)
T 3a1j_C 158 LDMTS-E---VLQITMSPDKPYFRLSTFG-NAGSSHLDYPKDSDLMEAFHCNQTQV-NRYKISLLK 217 (263)
T ss_dssp SCTTS-S---EEEEEECSSSSSEEEEEEE-TTEEEEEEECTTCSSEEEEEECSCEE-EEEEHHHHT
T ss_pred HhccC-C---eEEEEEEcCCCEEEEEEEc-CCccEEEEEcCCCCeEEEEEeCChhh-cEEeHHHHH
Confidence 88765 2 488899988 99999886 66654433321 222 34555 778888765
No 105
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=95.89 E-value=0.0071 Score=64.30 Aligned_cols=77 Identities=18% Similarity=0.237 Sum_probs=51.6
Q ss_pred CccchhHHhHHHhhHhhhcCCCCCeEEEEEecCC---cEEEEECCCccccccccCCCCCCCCcceEEEEeeecccCCCCC
Q psy13360 376 TGLHHFVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNK 452 (1161)
Q Consensus 376 ~gl~hlv~EivdNsiDe~~~g~~~~I~V~i~~dg---sisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t~l~ag~kfd~ 452 (1161)
.-|..++.++++||+..+. ....|.|.+..++ .|+|.|||.|||.+..+. +|.....+.
T Consensus 122 ~~l~~il~nLl~NA~~~~~--~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~------------if~~~~~~~---- 183 (244)
T 3d36_A 122 EKFRQCLLNVMKNAIEAMP--NGGTLQVYVSIDNGRVLIRIADTGVGMTKEQLER------------LGEPYFTTK---- 183 (244)
T ss_dssp HHHHHHHHHHHHHHHHTCT--TCEEEEEEEEEETTEEEEEEEECSSCCCHHHHHH------------TTSTTCCSS----
T ss_pred HHHHHHHHHHHHHHHHhcc--CCCeEEEEEEEeCCEEEEEEEecCCCCCHHHHHH------------HhcccccCC----
Confidence 3588888899999988653 3457888776543 589999999999875543 121111111
Q ss_pred CceeeecccccchhhHhhhhccE
Q psy13360 453 NSYKISGGLHGIGLSCVNGLSRF 475 (1161)
Q Consensus 453 ~~yk~sgGlhGvG~svvNalS~~ 475 (1161)
..+-+|+|++.|..+.+.
T Consensus 184 -----~~~g~GlGL~i~~~i~~~ 201 (244)
T 3d36_A 184 -----GVKGTGLGMMVVYRIIES 201 (244)
T ss_dssp -----GGGCCSCHHHHHHHHHHH
T ss_pred -----CCCCcchhHHHHHHHHHH
Confidence 123479999998887754
No 106
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=95.87 E-value=0.0034 Score=64.65 Aligned_cols=47 Identities=23% Similarity=0.406 Sum_probs=36.7
Q ss_pred cchhHHhHHHhhHhhhcC----------CCCCeEEEEEecCC---cEEEEECCCcccccc
Q psy13360 378 LHHFVFEILDNAIDESLA----------GYCTKINVTIYSDN---SISISDNGRGIPIDI 424 (1161)
Q Consensus 378 l~hlv~EivdNsiDe~~~----------g~~~~I~V~i~~dg---sisV~DnGrGIPv~~ 424 (1161)
+.+++.++|+||+..+.. .....|.|.+..++ .|+|.|||.|||.+.
T Consensus 48 l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~ 107 (189)
T 1i58_A 48 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEK 107 (189)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEEETTEEEEEEEECSSCCCHHH
T ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEecCCEEEEEEEeCCCCcCHHH
Confidence 455599999999998743 24568888887643 589999999999764
No 107
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=95.84 E-value=0.012 Score=61.80 Aligned_cols=43 Identities=23% Similarity=0.201 Sum_probs=32.0
Q ss_pred cchhHHhHHHhhHhhhcCCCCCeEEEEEecCC---cEEEEECCCccccc
Q psy13360 378 LHHFVFEILDNAIDESLAGYCTKINVTIYSDN---SISISDNGRGIPID 423 (1161)
Q Consensus 378 l~hlv~EivdNsiDe~~~g~~~~I~V~i~~dg---sisV~DnGrGIPv~ 423 (1161)
|..++.|+++||+..+- ++.|.|.+..++ .|+|.|||.|||.+
T Consensus 131 l~~il~nll~Na~k~~~---~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~ 176 (218)
T 3ehh_A 131 LSMCLKEAVTNVVKHSQ---AKTCRVDIQQLWKEVVITVSDDGTFKGEE 176 (218)
T ss_dssp HHHHHHHHHHHHHHHTC---CSEEEEEEEEETTEEEEEEEESSCCCC--
T ss_pred HHHHHHHHHHHHHHhCC---CCEEEEEEEEeCCEEEEEEEECCcCCCCC
Confidence 56677888888887662 357888887644 58999999999954
No 108
>1b77_A GP45, protein (sliding clamp); replisome; 2.10A {Enterobacteria phage RB69} SCOP: d.131.1.2 d.131.1.2 PDB: 1b8h_A* 1czd_A* 3u5z_G* 3u60_G* 3u61_G*
Probab=95.40 E-value=1 Score=47.57 Aligned_cols=203 Identities=14% Similarity=0.180 Sum_probs=127.1
Q ss_pred CceEEEccHHHHHHHHHHhhccccCCCchhhhccEEEEEECCeEEEEEecceeEEEEEeeecccCCceEEEEechhHHHH
Q psy13360 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDI 80 (1161)
Q Consensus 1 Mk~~v~i~k~~L~~aL~~v~~~v~~k~~~piL~~Iliea~~~~L~ltatD~e~~i~~~i~a~~~~~~G~v~V~ak~l~~I 80 (1161)
|++ .++-++.|+.-+. |..+|.|. .|+.+.-.+-+..+...+.++-+. +.+ --+.+-..|+.+
T Consensus 1 Mkl-----SK~Ti~iLKNFa~---------IN~SI~lk-pG~~i~T~s~~~~i~AeA~I~d~f-d~e-~~IYDL~~FL~i 63 (228)
T 1b77_A 1 MKL-----SKDTIAILKNFAS---------INSGILLS-QGKFIMTRAVNGTTYAEANISDEI-DFD-VALYDLNSFLSI 63 (228)
T ss_dssp CCC-----CHHHHHHHHHHHT---------TCSCEEEC-SEEEEEEECTTSSEEEEEEEEEEE-CSC-EEESCHHHHHHH
T ss_pred Ccc-----cHHHHHHHHhHHh---------hCCceEEc-CCCEEEEEeCCCcEEEEEEecccC-cce-eeeeeHHHHHHH
Confidence 666 3455566665553 33557766 233344444466777777776544 222 335566789999
Q ss_pred HhcCCCCccEEEEEeCcEEEEEECcEEEEEccCCCC--CCCCcc-CCCCcceEEEEcHHHHHHHHHhhcccccccccccc
Q psy13360 81 LRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAK--EYPIMT-LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYY 157 (1161)
Q Consensus 81 vk~Lp~~~~I~ie~~~~~l~I~sG~~~~~l~~~~~e--dfP~~~-~~~~~~~~~~i~~~~L~~aI~~v~~a~s~~~trpi 157 (1161)
++.+.++.+|++.. ++.+.|+.|+++.+.+..+++ .+|.-+ ..|.....|.+.+++|.+..+.. ... -
T Consensus 64 L~L~~~~aei~~~~-~~~I~I~~~rs~~~~~~adp~~I~~P~k~i~~P~~dv~F~L~~edl~ql~kas-~~l-------~ 134 (228)
T 1b77_A 64 LSLVSDDAEISMHT-DGNIKIADTRSTVYWPAADKSTIVFPNKPIQFPVASVITEIKAEDLQQLLRVS-RGL-------Q 134 (228)
T ss_dssp HTTSCTTCEEEECT-TSSEEEECSSEEEEECCBCGGGSCCCSSCCCCCCCSEEEEECHHHHHHHHHHH-HHT-------T
T ss_pred HhccCCCCeEEecC-CceEEEeCCCeEEEEEccCcccccCCccccCCCCCCEEEEECHHHHHHHHHHH-Hhc-------C
Confidence 99998554566532 339999999999999988886 445432 22445789999999998876654 222 3
Q ss_pred eeeEEEEEECCEEEEEE----ecc------eEEEEEEEecCCCCCCcceEEEehhhHHHHHhhhcCCCCcEEEEEeCcEE
Q psy13360 158 LNGLLLSFQKKNIIAVS----SDG------HRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQI 227 (1161)
Q Consensus 158 L~GV~~~~~~~~L~lvA----TDg------~RLa~~~i~~~~~~~~~~~viIP~k~L~eL~klL~~~~~~V~i~~~~~~l 227 (1161)
+.-+.|...+|.+.+++ .|+ |-+.+. +.++ ..+|.+.+....+ |++++ +-.|.+....++.
T Consensus 135 l~dl~~~~~~g~i~i~~~~~~~d~s~~~n~ysv~vg--e~~~--~~~F~f~i~i~Nl----k~i~~-dY~V~i~~~s~~~ 205 (228)
T 1b77_A 135 IDTIAITNKDGKIVINGYNKVEDSGLTRPKYSLTLT--DYDG--SNNFNFVINMANM----KIQPG-NYKVMLWGAGDKV 205 (228)
T ss_dssp CCEEEEEEETTEEEEEEECTTTCTTCCSCSEEEEEE--ECCC--SCCEEEEEEGGGC----CCCSS-CEEEEEEEETTEE
T ss_pred CCeEEEEecCCEEEEEEeeccCCCCccCCceEEEee--cccC--CCceEEEEEhhhe----EecCC-ceEEEEEecChhh
Confidence 56688999999999996 232 233332 2222 3368899887665 66664 5556665444443
Q ss_pred --EEEECcEEEEE
Q psy13360 228 --KIIFSNIEIIS 238 (1161)
Q Consensus 228 --~f~~~~~~~~~ 238 (1161)
.|+..+..+..
T Consensus 206 aa~F~~~~~~Y~I 218 (228)
T 1b77_A 206 AAKFESSQVSYVI 218 (228)
T ss_dssp EEEEECSSCEEEE
T ss_pred heeecCCCeeEEE
Confidence 45555544443
No 109
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=95.24 E-value=0.032 Score=65.00 Aligned_cols=85 Identities=19% Similarity=0.196 Sum_probs=58.1
Q ss_pred ccchhHHhHHHhhHhhhcCC-CCCeEEEEEec--CC--cEEEEECCCccccccccCCCCCCCCcceEEEEeeecccCCCC
Q psy13360 377 GLHHFVFEILDNAIDESLAG-YCTKINVTIYS--DN--SISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFN 451 (1161)
Q Consensus 377 gl~hlv~EivdNsiDe~~~g-~~~~I~V~i~~--dg--sisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t~l~ag~kfd 451 (1161)
-+.-++.|++.||+..+..+ ....|.|.+.. ++ .|+|.|+|+|+|.. +.
T Consensus 297 ~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~--~~------------------------ 350 (399)
T 3ke6_A 297 DIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHR--DG------------------------ 350 (399)
T ss_dssp HHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTSEEEEEEEESCBC--------------------------------
T ss_pred HHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCCEEEEEEEECCCCCCCC--CC------------------------
Confidence 47788999999999998643 24567777764 33 58999999999854 11
Q ss_pred CCceeeecccccchhhHhhhhccEEEEEEEeCCEEEEEEEEcC
Q psy13360 452 KNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYG 494 (1161)
Q Consensus 452 ~~~yk~sgGlhGvG~svvNalS~~~~V~v~r~g~~~~q~f~~G 494 (1161)
.+-+|.|+.+|..|+..+.+....+|+....+|.-.
T Consensus 351 -------~~~~G~GL~lv~~l~~~~~~~~~~~G~~v~~~~~~~ 386 (399)
T 3ke6_A 351 -------ARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRLS 386 (399)
T ss_dssp -------------CHHHHHTTSSEEEEEEETTEEEEEEEEECE
T ss_pred -------CCCCCcHHHHHHHHHHheeeEECCCcEEEEEEEEcC
Confidence 134689999999999999887666777777777544
No 110
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=94.00 E-value=0.039 Score=63.84 Aligned_cols=48 Identities=23% Similarity=0.383 Sum_probs=36.5
Q ss_pred cchhHHhHHHhhHhhhcC----------CCCCeEEEEEecCC---cEEEEECCCccccccc
Q psy13360 378 LHHFVFEILDNAIDESLA----------GYCTKINVTIYSDN---SISISDNGRGIPIDIK 425 (1161)
Q Consensus 378 l~hlv~EivdNsiDe~~~----------g~~~~I~V~i~~dg---sisV~DnGrGIPv~~~ 425 (1161)
+...+.++|.||+|.+.. ....+|.|.+..++ .|+|.|||+|||.+..
T Consensus 107 l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~ 167 (379)
T 1b3q_A 107 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKI 167 (379)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEEeCCEEEEEEEECCCCCCHHHH
Confidence 334489999999998742 24567888887644 5899999999998754
No 111
>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_C 3ggr_B
Probab=93.58 E-value=2.6 Score=46.42 Aligned_cols=208 Identities=13% Similarity=0.158 Sum_probs=123.4
Q ss_pred CceEEEccHH----HHHHHHHHhhccccCCCchhhhccEEEEEECCeEEEEEecc----eeEEEEEeeecc------cC-
Q psy13360 1 MQLVVNTEKN----AILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDT----EVQITTYTAVGY------GN- 65 (1161)
Q Consensus 1 Mk~~v~i~k~----~L~~aL~~v~~~v~~k~~~piL~~Iliea~~~~L~ltatD~----e~~i~~~i~a~~------~~- 65 (1161)
|||...+... .|.+.++.+.+.. ....+.+.+++|.+.++|. .+.+.+.++... ++
T Consensus 2 MkF~a~l~~~~~~~~lkki~~ai~~L~---------k~~~l~~t~~~l~~~~~d~~~~~~v~l~~~~~~~~~F~~Y~~~s 72 (281)
T 3a1j_B 2 MKFRAKIVDGACLNHFTRISNMIAKLA---------KTCTLRISPDKLNFILCDKLANGGVSMWCELEQENFFNEFQMEG 72 (281)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHHHHHC---------SEEEEEECSSEEEEEECCCC--CCCEEEEEEEGGGTCSEEEEEC
T ss_pred ceEEEEecCcchHHHHHHHHHHHHHHh---------CEEEEEEcCCEEEEEECCCCCCCeEEEEEEeehhcCCCCeEEee
Confidence 9998887654 4666777777666 4678899999999999884 566666665421 11
Q ss_pred -----CceEEEEechhHHHHHhcCCCCccEEEEEe-C--cEEEEEEC------c---E--EEEEccCCCCCCCCc--cCC
Q psy13360 66 -----SSINIIVAARKFIDILRSLPETEKVTIYIE-N--KHMFIKSG------K---S--KFTLQTLDAKEYPIM--TLN 124 (1161)
Q Consensus 66 -----~~G~v~V~ak~l~~Ivk~Lp~~~~I~ie~~-~--~~l~I~sG------~---~--~~~l~~~~~edfP~~--~~~ 124 (1161)
..-.+-++...|..++|...+...+++... + ..+.+... + . .+.+..++..+...+ |..
T Consensus 73 ~~~~~n~I~l~v~~~~L~k~Lk~a~n~~~~~ikL~k~~~p~L~fe~~~~~~~~~~~~v~~dipvkll~~~~~e~l~~P~~ 152 (281)
T 3a1j_B 73 VSAENNEIYLELTSENLSRALKTAQNARALKIKLTNKHFPCLTVSVELLSMSSSSRIVTHDIPIKVIPRKLWKDLQEPVV 152 (281)
T ss_dssp SSSTTCCEEEEEEHHHHHHHGGGGGGEEEEEEEEECSSSCEEEEEEEECCSSSCCCEEEEEEECEECCGGGGGGGSCCCC
T ss_pred ccCCCCEEEEEEeHHHHHHHHHhcCCCCeEEEEeccCCCCEEEEEEEcccCCCCceEEEEEeeeEEcCHHHHhhcCCCCC
Confidence 244678999999999999876556788743 3 23444433 1 1 244456665333332 333
Q ss_pred CCcceEEEEcH-HHHHHHHHhhcccccccccccceee-EEEEEECCEEEEEEecceEEEEEEEecC------------CC
Q psy13360 125 SKYDFEFTLSQ-KTLKCILNMVYFSIAQQDIRYYLNG-LLLSFQKKNIIAVSSDGHRLTYYQVNID------------KK 190 (1161)
Q Consensus 125 ~~~~~~~~i~~-~~L~~aI~~v~~a~s~~~trpiL~G-V~~~~~~~~L~lvATDg~RLa~~~i~~~------------~~ 190 (1161)
+++...+.+|+ ..|++.+++.......=.-.--..| +.|..+++ .-.....--.+. ..
T Consensus 153 ~~~dv~i~lPsl~~~~~iv~~lk~i~d~v~i~a~~~G~l~f~~~~d--------~~~~~~~~~~l~~~~~~~~~~~~~~~ 224 (281)
T 3a1j_B 153 PDPDVSIYLPVLKTMKSVVEKMKNISNHLVIEANLDGELNLKIETE--------LVCVTTHFKDLGNPPLASESTHEDRN 224 (281)
T ss_dssp CCCSEEEECCCHHHHHHHHHHHHTTCSEEEEEECTTSCEEEEEECS--------SEEEEEEECCCCCCCC----------
T ss_pred CCCCeEEECCCHHHHHHHHHHHhccCCeEEEEEECCCeEEEEEEee--------eEEEEEEEcCCCCCCCCccccccccC
Confidence 34578899999 6999999887544211000001234 55554433 222222111111 11
Q ss_pred CCCcceEEEehhhHHHHHhhhcCCCCcEEEE-EeCcE
Q psy13360 191 FSSCSDIIIPRKTVFTLQRLLENKENPVELK-ISNNQ 226 (1161)
Q Consensus 191 ~~~~~~viIP~k~L~eL~klL~~~~~~V~i~-~~~~~ 226 (1161)
.+++.++.+..|.+....+.-+-. ..+.+. +.++.
T Consensus 225 ~~~~~sv~~~~k~l~~f~k~~~ls-~~v~~~~i~~~~ 260 (281)
T 3a1j_B 225 VEHMAEVHIDIRKLLQFLAGQQVN-PTKALCNIVNNK 260 (281)
T ss_dssp CCCCEEEEEEHHHHHHHHHHCCSC-CSEEEEEEETTT
T ss_pred CCccEEEEEEHHHHHHhhCcccCC-CcEEEEEEeCCc
Confidence 233568999999999999875432 345555 65544
No 112
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=91.95 E-value=0.12 Score=55.76 Aligned_cols=45 Identities=16% Similarity=0.009 Sum_probs=31.3
Q ss_pred cchhHHhHHHhhHhhhcCCCCCeEEEEEecC-C--cEEEEECCCcccccc
Q psy13360 378 LHHFVFEILDNAIDESLAGYCTKINVTIYSD-N--SISISDNGRGIPIDI 424 (1161)
Q Consensus 378 l~hlv~EivdNsiDe~~~g~~~~I~V~i~~d-g--sisV~DnGrGIPv~~ 424 (1161)
+.+++.-++.||++.. .+...|.|.+..+ + .|+|.|+|.|||++.
T Consensus 147 ~~qvl~NLl~NA~~a~--~~gg~I~v~~~~~~~~~~i~V~D~G~Gi~i~~ 194 (247)
T 4fpp_A 147 SSRAVLNIAQIAASAL--PAGGVATVKGVAADGRFSIIADAKGPRARLRP 194 (247)
T ss_dssp HHHHHHHHHHHHHTTC--TTCCEEEEEEEEETTEEEEEEEEESTTCCCCH
T ss_pred HHHHHHHHHHHHHHhc--CCCCeEEEEEEEECCEEEEEEEEcCCCCCCCH
Confidence 4566666666766543 3345788887753 3 589999999988763
No 113
>3g65_A Cell cycle checkpoint control protein RAD9A; PCNA, DNA binding clamp, DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein; 2.90A {Homo sapiens}
Probab=90.54 E-value=5.5 Score=44.16 Aligned_cols=138 Identities=12% Similarity=0.058 Sum_probs=95.5
Q ss_pred eeeEEEEEECCEEEEEEecceEEEEEEEecCCCC------C----CcceEEEehhhHHHHHhhhcCC---CCcEEEEEe-
Q psy13360 158 LNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF------S----SCSDIIIPRKTVFTLQRLLENK---ENPVELKIS- 223 (1161)
Q Consensus 158 L~GV~~~~~~~~L~lvATDg~RLa~~~i~~~~~~------~----~~~~viIP~k~L~eL~klL~~~---~~~V~i~~~- 223 (1161)
-.-++|++.+++|.+.|.|.-|.+...+.+.... + +...+-|..|.+..+.|-+... -+.+.|.++
T Consensus 24 gdEl~~e~~~dgL~LravNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~~c~i~~K~ll~vfr~~~~~d~~ve~c~i~l~~ 103 (296)
T 3g65_A 24 GDELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQYQAATPGQDLLRCKILMKSFLSVFRSLAMLEKTVEKCCISLNG 103 (296)
T ss_dssp CSEEEEEEETTEEEEEEECTTSCEEEEEEETTSSCCCCCC-------CCEEEEHHHHHTTTSSTTC----CCEEEEEECC
T ss_pred CceEEEEEcCCeEEEEEECCcceEEEEEEeChHHhhheecCCCCCccEEEEEEhHHHHHHhccccccccceeEEEEEEeC
Confidence 3559999999999999999999999988876431 1 2346888888888887776432 244566665
Q ss_pred -CcEEEEEE--C-c--EEEEEeecCCCCCCccccccC-CcceEEEEeHHHHHHHHHHhhccccCCcceEEEEEe-CCEEE
Q psy13360 224 -NNQIKIIF--S-N--IEIISKLIDGKFLDYKYVISN-KYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIK-PNYLK 295 (1161)
Q Consensus 224 -~~~l~f~~--~-~--~~~~~rli~g~fPdy~~vip~-~~~~~i~v~r~~L~~aL~Rv~~~s~~~~~~V~l~~~-~~~L~ 295 (1161)
++.++|+. . + -++...+.+.. ..+.++|. .+++.+.++.+.|.++|+-.....++ |.|... ++++.
T Consensus 104 ~~~rl~i~l~ck~gi~Kt~~l~~~~~~--~l~a~~~~~~~~n~~~i~~~~l~e~l~~f~~~~ee----vtl~~~~~~~v~ 177 (296)
T 3g65_A 104 RSSRLVVQLHCKFGVRKTHNLSFQDCE--SLQAVFDPASCPHMLRAPARVLGEAVLPFSPALAE----VTLGIGRGRRVI 177 (296)
T ss_dssp C---EEEEEECGGGCEEEEEECCCCCC--CCCCCCCGGGCSCEEEEEHHHHHHHSTTSCTTCCE----EEEEEETTTEEE
T ss_pred CCCEEEEEEEeCCCeEEEEEEEeEecc--ccccccCchhCcEEEEEchHHHHHHHHhCcCCcce----EEEEECCCCeEE
Confidence 45565555 3 2 34555555543 44555655 46899999999999999876654433 889998 78999
Q ss_pred EEEEcC
Q psy13360 296 ITVSSS 301 (1161)
Q Consensus 296 isa~d~ 301 (1161)
+.+...
T Consensus 178 ~~s~~e 183 (296)
T 3g65_A 178 LRSYHE 183 (296)
T ss_dssp EEECCC
T ss_pred EEEecc
Confidence 987653
No 114
>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_C 3ggr_B
Probab=80.97 E-value=23 Score=38.80 Aligned_cols=167 Identities=11% Similarity=0.192 Sum_probs=100.5
Q ss_pred eeEEEEEECCEEEEEEec----ceEEEEEEEecCCCC-----------CCcceEEEehhhHHHHHhhhcCCCCcEEEEEe
Q psy13360 159 NGLLLSFQKKNIIAVSSD----GHRLTYYQVNIDKKF-----------SSCSDIIIPRKTVFTLQRLLENKENPVELKIS 223 (1161)
Q Consensus 159 ~GV~~~~~~~~L~lvATD----g~RLa~~~i~~~~~~-----------~~~~~viIP~k~L~eL~klL~~~~~~V~i~~~ 223 (1161)
.-+.|.++++++.+.++| +|-..+..+..+... +.+..+-++...|..++|...+ +..+++...
T Consensus 29 k~~~l~~t~~~l~~~~~d~~~~~~v~l~~~~~~~~~F~~Y~~~s~~~~~n~I~l~v~~~~L~k~Lk~a~n-~~~~~ikL~ 107 (281)
T 3a1j_B 29 KTCTLRISPDKLNFILCDKLANGGVSMWCELEQENFFNEFQMEGVSAENNEIYLELTSENLSRALKTAQN-ARALKIKLT 107 (281)
T ss_dssp SEEEEEECSSEEEEEECCCC--CCCEEEEEEEGGGTCSEEEEECSSSTTCCEEEEEEHHHHHHHGGGGGG-EEEEEEEEE
T ss_pred CEEEEEEcCCEEEEEECCCCCCCeEEEEEEeehhcCCCCeEEeeccCCCCEEEEEEeHHHHHHHHHhcCC-CCeEEEEec
Confidence 457889999999999988 477677766653221 1244577777777666666543 456777755
Q ss_pred CcE---EEEEEC-------c--E--EEEEeecCC-CCCCccccccC--CcceEEEEeH-HHHHHHHHHhhccccCCcceE
Q psy13360 224 NNQ---IKIIFS-------N--I--EIISKLIDG-KFLDYKYVISN--KYEKSFLVNR-NKLLRSLQRISIISNDKLKGV 285 (1161)
Q Consensus 224 ~~~---l~f~~~-------~--~--~~~~rli~g-~fPdy~~vip~--~~~~~i~v~r-~~L~~aL~Rv~~~s~~~~~~V 285 (1161)
++. +.|+.. + . .+-.++++- +...+. +|. ++...+.++. .+|...++|..-+.+. |
T Consensus 108 k~~~p~L~fe~~~~~~~~~~~~v~~dipvkll~~~~~e~l~--~P~~~~~dv~i~lPsl~~~~~iv~~lk~i~d~----v 181 (281)
T 3a1j_B 108 NKHFPCLTVSVELLSMSSSSRIVTHDIPIKVIPRKLWKDLQ--EPVVPDPDVSIYLPVLKTMKSVVEKMKNISNH----L 181 (281)
T ss_dssp CSSSCEEEEEEEECCSSSCCCEEEEEEECEECCGGGGGGGS--CCCCCCCSEEEECCCHHHHHHHHHHHHTTCSE----E
T ss_pred cCCCCEEEEEEEcccCCCCceEEEEEeeeEEcCHHHHhhcC--CCCCCCCCeEEECCCHHHHHHHHHHHhccCCe----E
Confidence 543 445544 1 1 244567774 333332 344 4678999999 7999999999988632 5
Q ss_pred EEEEeCCE-EEEEEEcCCccccceeee-------------eee-eCCccceeeechhhhh--hccc
Q psy13360 286 RLVIKPNY-LKITVSSSNREKASEELE-------------INY-NGKDKNFIKFLIKIML--LKNK 334 (1161)
Q Consensus 286 ~l~~~~~~-L~isa~d~~~g~~~E~i~-------------~~~-~Ge~~~ii~fn~~yLl--L~~~ 334 (1161)
.++.+.++ |+++... +.+.+.-.+. ... .+++.. +.|..+||. ++..
T Consensus 182 ~i~a~~~G~l~f~~~~-d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s-v~~~~k~l~~f~k~~ 245 (281)
T 3a1j_B 182 VIEANLDGELNLKIET-ELVCVTTHFKDLGNPPLASESTHEDRNVEHMAE-VHIDIRKLLQFLAGQ 245 (281)
T ss_dssp EEEECTTSCEEEEEEC-SSEEEEEEECCCCCCCC----------CCCCEE-EEEEHHHHHHHHHHC
T ss_pred EEEEECCCeEEEEEEe-eeEEEEEEEcCCCCCCCCccccccccCCCccEE-EEEEHHHHHHhhCcc
Confidence 55554333 5555444 3333222211 111 234555 899999986 5543
No 115
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=67.32 E-value=5.6 Score=41.20 Aligned_cols=43 Identities=12% Similarity=0.085 Sum_probs=29.9
Q ss_pred hHHHhhHhhhcC-CCCCeEEEEEecC--C---cEEEEECCCcccccccc
Q psy13360 384 EILDNAIDESLA-GYCTKINVTIYSD--N---SISISDNGRGIPIDIKI 426 (1161)
Q Consensus 384 EivdNsiDe~~~-g~~~~I~V~i~~d--g---sisV~DnGrGIPv~~~~ 426 (1161)
+...||++++.. +....|.|.+..+ + .|.|.|+|+|||.+...
T Consensus 115 ~na~~Ai~~~~~~~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~ 163 (192)
T 1ixm_A 115 RKLFHLFDQAVSRESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFD 163 (192)
T ss_dssp HHHHHHHHHHBCTTSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC
T ss_pred HHHHHHHHhhhccCCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHH
Confidence 333444444432 3567899998876 4 68999999999987654
No 116
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=49.05 E-value=62 Score=38.72 Aligned_cols=86 Identities=14% Similarity=0.269 Sum_probs=56.6
Q ss_pred ceEEEEEEeecCCC----cceeeeeecccccC-CCCchhHHHHHHHHHHHHHHHHHhcccccccccCChhhHhcceEEEE
Q psy13360 611 NINIDVSMQWNNSY----NENILCFTNNILQV-DGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVL 685 (1161)
Q Consensus 611 ~~~veva~~~~~~~----~e~~~SFvN~I~T~-~GGtHv~g~~~alt~~in~~~~~~~l~Kk~~~~~~~~diregL~~vv 685 (1161)
-..||+|+.|...- .-.++-|+|-||.. +.|. .++|+++.. -+. +..++++ =..-+.++|
T Consensus 349 pf~vE~~~a~gg~~~~~~~~~i~r~aNrvpl~~~~~~------~~~~~~~~~----~~w-~~y~~~~----~~~~~~~~v 413 (530)
T 2zbk_B 349 PFIVEAGVAFGGSIPVGEEPIVLRYANKIPLIYDEKS------DVIWKVVEE----LDW-KRYGIES----DQYQMVVMV 413 (530)
T ss_dssp EEEEEEEEEESTTSCCBSSCEEEEEETTEEECTTGGG------CHHHHHHHH----SCT-TSSSCCC----SSBCEEEEE
T ss_pred CEEEEEEeeccCCCCCCCCceEEEEecCCceeecCCc------chhhhhhcc----CCh-hhcCcCC----CCCCEEEEE
Confidence 36799999996432 22689999999986 4553 356666632 111 2222221 113678999
Q ss_pred EEeecCCCccccccccccc-ccccchh
Q psy13360 686 SIKIPDPKFNSQTKNKLVS-SEVRKPV 711 (1161)
Q Consensus 686 sv~i~~P~FegQTK~kL~n-~~v~~~v 711 (1161)
++-.++--|.|-.|+.+.. +|+...+
T Consensus 414 ~i~st~vp~~~~~Ke~i~~~~ei~~ei 440 (530)
T 2zbk_B 414 HLCSTKIPYKSAGKESIAEVENIEKEI 440 (530)
T ss_dssp EEEESSCCBSSSSCSCBCCCHHHHHHH
T ss_pred EeccCCCCcCCCCccccCCcHHHHHHH
Confidence 9999999999999999875 3443333
No 117
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=27.91 E-value=19 Score=34.27 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=22.5
Q ss_pred ccce-EEEeecCCCCChhhHHHHHHHH
Q psy13360 851 RYHR-IIIMTDADIDGAHIRALLLTFF 876 (1161)
Q Consensus 851 RY~k-iiimtDaD~DG~HI~~Llltff 876 (1161)
||.. |||+||.|.=|-.|+.-+...|
T Consensus 60 ~~~~~VIIltD~D~aGe~ir~~i~~~l 86 (118)
T 1t6t_1 60 GKWEKVILLFDLDTHGERINQKMKELL 86 (118)
T ss_dssp TTCSEEEECCCSSHHHHHHHHHHHHHH
T ss_pred hCCCEEEEEECCChhHHHHHHHHHHhc
Confidence 4667 9999999999999998877665
No 118
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=23.05 E-value=3.6e+02 Score=32.79 Aligned_cols=82 Identities=17% Similarity=0.306 Sum_probs=52.9
Q ss_pred eEEEEEEeecCCC----cceeeeeecccc-cCCCCchhHHHHHHHHHHHHHHHHHhcccccccccCChhhHh-cceEEEE
Q psy13360 612 INIDVSMQWNNSY----NENILCFTNNIL-QVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIR-EGLTCVL 685 (1161)
Q Consensus 612 ~~veva~~~~~~~----~e~~~SFvN~I~-T~~GGtHv~g~~~alt~~in~~~~~~~l~Kk~~~~~~~~dir-egL~~vv 685 (1161)
..||+|+.|...- .-.++-|+|-|| ..+.|.- ++|+++.. -+. |..+++-.+..+- .-+.++|
T Consensus 353 fivE~~ia~gg~~~~~~~~~~~rfanrvpll~~~g~~------~~t~~~~~----~~w-~~y~~~~~~~~~p~~~~~~~v 421 (621)
T 2q2e_B 353 FVVEVGMAYGGNLPKEEKISIMRFANRVPLLYQQGGC------VTTHAVED----IKW-KQYGLNQPGGGIPVGPVILLI 421 (621)
T ss_dssp EEEEEEEEESSSSCSSSCCCEEEEETTBCCCSCCTTC------HHHHHHHH----SCC-TTTTCCCCSSSSCCSSCCEEE
T ss_pred eEEEEeeecCCCCCCCCceeEEEEccCCceeecCCcc------HHHHHHHh----CCh-hhcCcCCCCCCCCCCCEEEEE
Confidence 5699999996432 236899999999 4566653 45666542 111 2222221111122 2467899
Q ss_pred EEeecCCCccccccccccc
Q psy13360 686 SIKIPDPKFNSQTKNKLVS 704 (1161)
Q Consensus 686 sv~i~~P~FegQTK~kL~n 704 (1161)
++--.+--|.|--|+.+..
T Consensus 422 ~~~st~vp~~~~~ke~ia~ 440 (621)
T 2q2e_B 422 HVASINVPFTSESKDAIAD 440 (621)
T ss_dssp EEECSSCCBSSSSSSSBCC
T ss_pred EEeecCCCcCCcchhhhcC
Confidence 9999999999999999985
No 119
>3hqc_A Tensin-like C1 domain-containing phosphatase; TENC1, phosphotyrosine binding domain, PTB, TNS2, KIAA1075, struct genomics, PSI-2; 1.80A {Homo sapiens} SCOP: b.55.1.2 PDB: 2loz_A 2dkq_A
Probab=20.76 E-value=89 Score=31.11 Aligned_cols=50 Identities=16% Similarity=0.307 Sum_probs=30.7
Q ss_pred eEEeecCCCCccchhHHhHHHhhHhhhcC----CCCCeEEEEEecCCcEEEEECCCcc
Q psy13360 367 MYIGDTSDGTGLHHFVFEILDNAIDESLA----GYCTKINVTIYSDNSISISDNGRGI 420 (1161)
Q Consensus 367 mYiGs~~~~~gl~hlv~EivdNsiDe~~~----g~~~~I~V~i~~dgsisV~DnGrGI 420 (1161)
+|+||++. +.|-- -++|-.|+...+. ...+.+...+..+| |++.||-|=.
T Consensus 19 ~yLgSvev-esltG--~~av~kAv~~~l~~~~~~~~t~V~fkVS~qG-ItLtD~~rK~ 72 (157)
T 3hqc_A 19 LYLTSVET-ESLTG--PQAVARASSAALSCSPRPTPAVVHFKVSAQG-ITLTDNQRKL 72 (157)
T ss_dssp EEEEEEEC-TTCCH--HHHHHHHHHHHHHCC---CCEEEEEEEETTE-EEEEEEETTE
T ss_pred EEeceEec-CCCCC--hHHHHHHHHHHHhcCCCCCCeEEEEEEeCCC-ceEEecccce
Confidence 89999987 33311 2455555554442 23456777777655 9999997643
Done!