Your job contains 1 sequence.
>psy13360
MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA
VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI
MTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRL
TYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKL
IDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSS
SNREKASEELEINYNGKDKNFIKFLIKIMLLKNKNSYDIQDTQESSYSASSIQILEGLEA
VRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGI
PIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTI
NRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFH
YEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFVSYINKSKLVVHPTIFQA
IGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIE
ENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLF
DFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDDIELSTKLADCQEKNPELC
ELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQITTLISTLGIGI
EQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIK
YGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLK
QIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSNIEIIVEFDQLNNKYLLNIKK
KFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVIIQKSIGEKIKKYTANNFYKII
NYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGD
NVELRRKFIELNALHAKNIDI
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy13360
(1161 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|SO_0011 - symbol:SO_0011 "DNA gyrase, B subunit"... 1731 2.7e-178 1
UNIPROTKB|P0AES6 - symbol:gyrB species:83333 "Escherichia... 1717 8.3e-177 1
TIGR_CMR|ECH_0620 - symbol:ECH_0620 "DNA gyrase, B subuni... 1360 1.4e-159 2
UNIPROTKB|Q9KVX3 - symbol:gyrB "DNA gyrase subunit B" spe... 1526 1.3e-158 2
TIGR_CMR|VC_0015 - symbol:VC_0015 "DNA gyrase, subunit B"... 1526 1.3e-158 2
TIGR_CMR|APH_0716 - symbol:APH_0716 "DNA gyrase, B subuni... 1498 1.3e-153 1
UNIPROTKB|A6UX65 - symbol:gyrB "DNA gyrase subunit B" spe... 1267 6.4e-153 2
UNIPROTKB|Q3KMH2 - symbol:gyrB_1 "DNA gyrase subunit B" s... 1245 6.6e-149 2
UNIPROTKB|Q74H89 - symbol:gyrB "DNA gyrase subunit B" spe... 1163 2.4e-142 2
TIGR_CMR|GSU_0003 - symbol:GSU_0003 "DNA gyrase, B subuni... 1163 2.4e-142 2
TIGR_CMR|NSE_0721 - symbol:NSE_0721 "DNA gyrase, B subuni... 1188 8.1e-140 2
TIGR_CMR|SPO_0155 - symbol:SPO_0155 "DNA gyrase, B subuni... 1152 2.7e-139 2
UNIPROTKB|Q8A277 - symbol:gyrB "DNA gyrase subunit B" spe... 1167 6.5e-138 2
UNIPROTKB|P77993 - symbol:gyrB "DNA gyrase subunit B" spe... 1141 6.6e-136 2
UNIPROTKB|O08399 - symbol:gyrB "DNA gyrase subunit B" spe... 1132 8.4e-136 2
TIGR_CMR|CBU_0004 - symbol:CBU_0004 "DNA gyrase, B subuni... 1317 2.0e-134 1
TAIR|locus:2146698 - symbol:GYRB2 "DNA GYRASE B2" species... 1077 4.0e-128 3
UNIPROTKB|P05652 - symbol:gyrB "DNA gyrase subunit B" spe... 1050 1.5e-127 2
UNIPROTKB|P0C5C5 - symbol:gyrB "DNA gyrase subunit B" spe... 686 6.5e-127 3
UNIPROTKB|Q5NBJ3 - symbol:GYRB "DNA gyrase subunit B, chl... 1082 1.5e-125 2
TIGR_CMR|BA_0005 - symbol:BA_0005 "DNA gyrase, B subunit"... 1005 4.5e-124 2
UNIPROTKB|P35886 - symbol:gyrB "DNA gyrase subunit B" spe... 1067 4.5e-122 2
UNIPROTKB|Q7NHM9 - symbol:gyrB "DNA gyrase subunit B" spe... 992 2.9e-118 2
UNIPROTKB|Q9RVW5 - symbol:DR_0906 "DNA gyrase, subunit B"... 1009 7.6e-118 2
UNIPROTKB|Q89W70 - symbol:gyrB "DNA gyrase subunit B" spe... 1133 6.4e-115 1
TIGR_CMR|CJE_0003 - symbol:CJE_0003 "DNA gyrase, B subuni... 891 4.0e-114 3
TIGR_CMR|BA_3657 - symbol:BA_3657 "DNA topoisomerase IV, ... 898 7.1e-109 2
UNIPROTKB|O67137 - symbol:gyrB "DNA gyrase subunit B" spe... 1074 1.1e-108 1
UNIPROTKB|Q8FA30 - symbol:gyrB "DNA gyrase subunit B" spe... 1066 8.1e-108 1
UNIPROTKB|Q59192 - symbol:parE "DNA topoisomerase 4 subun... 874 1.1e-105 2
TIGR_CMR|CHY_2705 - symbol:CHY_2705 "DNA gyrase, B subuni... 983 4.0e-104 2
UNIPROTKB|A9WGP2 - symbol:gyrB "DNA gyrase subunit B" spe... 848 4.6e-103 2
UNIPROTKB|Q8TQG0 - symbol:gyrB "DNA gyrase subunit B" spe... 1019 7.7e-103 1
UNIPROTKB|A8IIG8 - symbol:TOP3 "DNA gyrase subunit B-like... 862 4.1e-100 2
UNIPROTKB|Q89M38 - symbol:gyrB "DNA gyrase subunit B" spe... 862 8.8e-96 2
GENEDB_PFALCIPARUM|PFL1915w - symbol:PFL1915w "dna gyrase... 392 1.3e-90 5
UNIPROTKB|Q8I528 - symbol:GyrB "Term=DNA gyrase subunit B... 392 1.3e-90 5
UNIPROTKB|Q7RHG3 - symbol:PY04024 "DNA topoisomerase II, ... 520 4.3e-90 4
UNIPROTKB|O69998 - symbol:O69998 "Putative DNA gyrase sub... 484 7.3e-90 3
TIGR_CMR|SPO_1253 - symbol:SPO_1253 "DNA topoisomerase IV... 789 1.7e-88 2
TIGR_CMR|DET_0004 - symbol:DET_0004 "DNA gyrase, B subuni... 861 4.3e-86 1
TIGR_CMR|CBU_0064 - symbol:CBU_0064 "DNA topoisomerase IV... 530 1.4e-59 2
UNIPROTKB|Q9KPD9 - symbol:VC_2431 "Topoisomerase IV, subu... 500 3.6e-57 2
TIGR_CMR|VC_2431 - symbol:VC_2431 "topoisomerase IV, subu... 500 3.6e-57 2
UNIPROTKB|P20083 - symbol:parE species:83333 "Escherichia... 500 2.0e-54 2
TIGR_CMR|SO_3899 - symbol:SO_3899 "DNA topoisomerase IV, ... 475 8.9e-53 2
UNIPROTKB|A6VD80 - symbol:parE "DNA topoisomerase IV, B s... 478 1.4e-52 2
TIGR_CMR|CBU_0002 - symbol:CBU_0002 "DNA polymerase III, ... 528 7.8e-50 1
UNIPROTKB|Q3KL33 - symbol:gyrB_2 "DNA gyrase subunit B" s... 334 9.9e-50 3
TIGR_CMR|SO_0009 - symbol:SO_0009 "DNA polymerase III, be... 525 1.6e-49 1
UNIPROTKB|P0A988 - symbol:dnaN species:83333 "Escherichia... 511 5.3e-48 1
UNIPROTKB|Q9KVX5 - symbol:dnaN "DNA polymerase III subuni... 477 2.4e-44 1
TIGR_CMR|VC_0013 - symbol:VC_0013 "DNA polymerase III, be... 477 2.4e-44 1
UNIPROTKB|Q8A3C1 - symbol:BT_3033 "DNA topoisomerase IV s... 331 6.7e-44 3
TIGR_CMR|ECH_1009 - symbol:ECH_1009 "DNA polymerase III, ... 371 5.7e-33 1
TIGR_CMR|SPO_0150 - symbol:SPO_0150 "DNA polymerase III, ... 371 5.7e-33 1
TIGR_CMR|GSU_0001 - symbol:GSU_0001 "DNA polymerase III, ... 349 1.3e-30 1
TIGR_CMR|APH_1097 - symbol:APH_1097 "DNA polymerase III, ... 315 5.6e-27 1
TIGR_CMR|NSE_0170 - symbol:NSE_0170 "DNA polymerase III, ... 284 9.7e-25 2
TIGR_CMR|BA_0002 - symbol:BA_0002 "DNA polymerase III, be... 284 1.1e-23 1
UNIPROTKB|Q8EYL9 - symbol:LA_4194 "DNA gyrase subunit B" ... 271 5.0e-21 4
TIGR_CMR|CHY_2709 - symbol:CHY_2709 "DNA polymerase III, ... 258 1.4e-19 1
DICTYBASE|DDB_G0279737 - symbol:top2mt "DNA topoisomerase... 274 3.8e-18 3
TIGR_CMR|BA_2684 - symbol:BA_2684 "DNA polymerase III, be... 237 6.5e-17 1
UNIPROTKB|Q7RJ69 - symbol:PY03394 "DNA topoisomerase 2" s... 244 6.3e-16 2
POMBASE|SPBC1A4.03c - symbol:top2 "DNA topoisomerase II" ... 224 3.9e-15 3
TIGR_CMR|CJE_0002 - symbol:CJE_0002 "DNA polymerase III, ... 218 7.6e-15 1
TAIR|locus:2146658 - symbol:GYRB3 "DNA GYRASE B3" species... 223 9.1e-15 1
DICTYBASE|DDB_G0270418 - symbol:top2 "DNA topoisomerase I... 206 9.3e-15 4
UNIPROTKB|Q7S9W8 - symbol:NCU06338 "DNA topoisomerase 2" ... 216 8.3e-14 3
TAIR|locus:2076201 - symbol:TOPII "AT3G23890" species:370... 223 1.3e-13 4
TIGR_CMR|DET_1227 - symbol:DET_1227 "DNA polymerase III, ... 208 1.4e-13 1
UNIPROTKB|Q755V8 - symbol:AER410W "DNA topoisomerase 2" s... 232 2.1e-13 3
ASPGD|ASPL0000029372 - symbol:top2 species:162425 "Emeric... 221 4.3e-13 4
UNIPROTKB|Q5B224 - symbol:AN5406.2 "DNA topoisomerase 2" ... 221 4.3e-13 4
RGD|62048 - symbol:Top2a "topoisomerase (DNA) II alpha" s... 198 1.3e-12 4
WB|WBGene00010785 - symbol:top-2 species:6239 "Caenorhabd... 204 1.8e-12 3
UNIPROTKB|Q23670 - symbol:K12D12.1 "Probable DNA topoisom... 204 1.8e-12 3
ZFIN|ZDB-GENE-041008-136 - symbol:top2b "topoisomerase (D... 222 1.9e-12 3
UNIPROTKB|P41515 - symbol:TOP2A "DNA topoisomerase 2-alph... 198 2.0e-12 4
SGD|S000005032 - symbol:TOP2 "Topoisomerase II, relieves ... 203 3.6e-12 3
UNIPROTKB|F1MDU7 - symbol:TOP2A "DNA topoisomerase 2" spe... 210 5.8e-12 4
UNIPROTKB|E9PCY5 - symbol:TOP2B "DNA topoisomerase 2" spe... 186 6.1e-12 3
CGD|CAL0005199 - symbol:TOP2 species:5476 "Candida albica... 210 7.3e-12 4
UNIPROTKB|Q5A1E7 - symbol:TOP2 "DNA topoisomerase 2" spec... 210 7.3e-12 4
FB|FBgn0003732 - symbol:Top2 "Topoisomerase 2" species:72... 213 8.8e-12 3
UNIPROTKB|P11388 - symbol:TOP2A "DNA topoisomerase 2-alph... 196 1.1e-11 4
UNIPROTKB|F1Q2M4 - symbol:TOP2A "DNA topoisomerase 2" spe... 196 1.3e-11 4
UNIPROTKB|J9PAY8 - symbol:TOP2A "DNA topoisomerase 2" spe... 196 1.4e-11 4
UNIPROTKB|Q02880 - symbol:TOP2B "DNA topoisomerase 2-beta... 186 2.1e-11 3
MGI|MGI:98790 - symbol:Top2a "topoisomerase (DNA) II alph... 205 5.9e-11 3
WB|WBGene00019884 - symbol:R05D3.12 species:6239 "Caenorh... 201 5.9e-11 3
UNIPROTKB|P34534 - symbol:R05D3.12 "Putative DNA topoisom... 201 5.9e-11 3
UNIPROTKB|O46374 - symbol:TOP2A "DNA topoisomerase 2-alph... 208 7.3e-11 4
UNIPROTKB|F1NR58 - symbol:TOP2B "DNA topoisomerase 2" spe... 187 7.5e-11 4
UNIPROTKB|O42131 - symbol:TOP2B "DNA topoisomerase 2-beta... 187 7.5e-11 4
UNIPROTKB|E9PTY5 - symbol:Top2a "DNA topoisomerase 2" spe... 198 7.8e-11 3
UNIPROTKB|F1M7A0 - symbol:Top2a "DNA topoisomerase 2" spe... 198 7.8e-11 3
MGI|MGI:98791 - symbol:Top2b "topoisomerase (DNA) II beta... 186 9.1e-11 4
UNIPROTKB|Q64399 - symbol:TOP2B "DNA topoisomerase 2-beta... 186 9.1e-11 4
WARNING: Descriptions of 15 database sequences were not reported due to the
limiting value of parameter V = 100.
>TIGR_CMR|SO_0011 [details] [associations]
symbol:SO_0011 "DNA gyrase, B subunit" species:211586
"Shewanella oneidensis MR-1" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898 InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0006261 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 HSSP:P06982 RefSeq:NP_715653.1
ProteinModelPortal:Q8EKS9 SMR:Q8EKS9 GeneID:1167909
KEGG:son:SO_0011 PATRIC:23519713 Uniprot:Q8EKS9
Length = 805
Score = 1731 (614.4 bits), Expect = 2.7e-178, P = 2.7e-178
Identities = 365/829 (44%), Positives = 508/829 (61%)
Query: 344 ESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINV 403
E+SY +SSI++L+GL+AVRKRP MYIGDT DGTGLHH VFE++DN+IDE+LAG+CT I +
Sbjct: 3 ENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDITI 62
Query: 404 TIYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHG 463
TI+ GRG SAAE++MT LHAGGKF+ NSYK+SGGLHG
Sbjct: 63 TIHVDGSVSVKDDGRGIPVSIHEEEGV----SAAEVIMTVLHAGGKFDDNSYKVSGGLHG 118
Query: 464 IGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGT 523
+G+S VN LS+ LQLTI R+ K+H + +GV +PIK IGD K GT
Sbjct: 119 VGVSVVNALSKKLQLTIRRDGKVHEQFYTHGVPD------------APIKEIGDATKTGT 166
Query: 524 KIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSGFV 583
+I FW E+ FSN+EFH+EIL KR+RELSFLN+GV I L+DER S FV
Sbjct: 167 EIRFWPSEQTFSNVEFHFEILAKRVRELSFLNSGVGIRLVDERDNKNEFFKYEGGISAFV 226
Query: 584 SYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNNSYNENILCFTNNILQVDGGTH 643
Y+N++K V+ +F +V+MQWN+ Y ENI CFTNNI Q DGGTH
Sbjct: 227 DYLNRNKTPVNKDVFH----FMQERDDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTH 282
Query: 644 LTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLV 703
L G RS +TR +N Y+E + KK K G+D REGLT V+S+K+PDPKF+SQTK+KLV
Sbjct: 283 LAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLV 342
Query: 704 SSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXXXXXXLTRKKNLIDDI 763
SSEV+ VE+ + + L D+L ENP ++KLI +TR+K +D
Sbjct: 343 SSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLG 402
Query: 764 ELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKI 823
L KLADCQEK+P L E+YIVEGDSAGGS KQGR+R+ QA+LPL+GK+LN+EKARF+K+
Sbjct: 403 GLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 462
Query: 824 ILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKL 883
+ S++ +DE+N +K RYH IIIMTDAD+DG+HIR LLLTFF+R+MP+L
Sbjct: 463 LSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPEL 522
Query: 884 IEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFF 943
IE GY+YIAQPPL+K+K G E YL+D+ +Y+ A + + +
Sbjct: 523 IERGYVYIAQPPLFKVKKGKQEQYLKDESALTQYLTTQALDGTSIYPSQGAPGMSGEPLE 582
Query: 944 KLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDT-------RENAEQFAKKIIKKL 996
+L+ +Y + IV RL+Q I + ++ +++ D +E + F ++++ L
Sbjct: 583 RLVTQYREVEAIVARLEQRYPTHITNRMLYHPMISNDMLADEAKMKEWIDAFIHELVE-L 641
Query: 997 NDSNI----EIIVEFDQXXXXXXXXXXXXXXXXXXXXXDINFINNKDYKKLVSIISTFXX 1052
+S + E +++ + +F + DY+++ + +
Sbjct: 642 ENSGVLYSGEPVLD-PERKVYLPKITIRKHGIDTHYLFSYDFFQSMDYQRIAKLGAALEG 700
Query: 1053 XXXXXXXXXXXXXEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTM 1112
+++K+ +F + +++ +EA+ + QRYKGLGEMNP QLWETTM
Sbjct: 701 LIEVGGYVQRG--DRVKE--VGSFIEALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTM 756
Query: 1113 NPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 1161
+P R +L+V I DA+ AD++F LMGD VE RR+FIE NAL+ N+D+
Sbjct: 757 DPESRRMLQVTIDDAVGADQLFTCLMGDQVEPRREFIEANALNVANLDV 805
>UNIPROTKB|P0AES6 [details] [associations]
symbol:gyrB species:83333 "Escherichia coli K-12"
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA;IMP] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=IDA] [GO:0006265
"DNA topological change" evidence=IEA;IMP] [GO:0005524 "ATP
binding" evidence=IEA;IDA] [GO:0042493 "response to drug"
evidence=IDA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0046677 "response to antibiotic"
evidence=IEA] HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0042493 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046677
GO:GO:0006351 EMBL:L10328 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009330 GO:GO:0009295 EMBL:X04341
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 PDB:3NUH PDBsum:3NUH
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF ProtClustDB:PRK14939
EMBL:D87842 EMBL:M15548 PIR:D65172 RefSeq:YP_026241.1
RefSeq:YP_491736.1 PDB:1AJ6 PDB:1EI1 PDB:1KZN PDB:3G7E PDB:4DUH
PDBsum:1AJ6 PDBsum:1EI1 PDBsum:1KZN PDBsum:3G7E PDBsum:4DUH
ProteinModelPortal:P0AES6 SMR:P0AES6 DIP:DIP-48005N IntAct:P0AES6
PaxDb:P0AES6 PRIDE:P0AES6 EnsemblBacteria:EBESCT00000002623
EnsemblBacteria:EBESCT00000017095 GeneID:12930543 GeneID:948211
KEGG:ecj:Y75_p3474 KEGG:eco:b3699 PATRIC:32122895 EchoBASE:EB0419
EcoGene:EG10424 BioCyc:EcoCyc:EG10424-MONOMER
BioCyc:ECOL316407:JW5625-MONOMER BioCyc:MetaCyc:EG10424-MONOMER
BindingDB:P0AES6 ChEMBL:CHEMBL1826 DrugBank:DB00817
EvolutionaryTrace:P0AES6 Genevestigator:P0AES6 Uniprot:P0AES6
Length = 804
Score = 1717 (609.5 bits), Expect = 8.3e-177, P = 8.3e-177
Identities = 360/827 (43%), Positives = 504/827 (60%)
Query: 345 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVT 404
+SY +SSI++L+GL+AVRKRP MYIGDT DGTGLHH VFE++DNAIDE+LAG+C +I VT
Sbjct: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62
Query: 405 IYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGI 464
I+ GRG SAAE++MT LHAGGKF+ NSYK+SGGLHG+
Sbjct: 63 IHADNSVSVQDDGRGIPTGIHPEEGV----SAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 118
Query: 465 GLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTK 524
G+S VN LS+ L+L I R KIH + +GV Q +P+ + G+T K GT
Sbjct: 119 GVSVVNALSQKLELVIQREGKIHRQIYEHGVPQ------------APLAVTGETEKTGTM 166
Query: 525 IHFWVDEKIFSNI-EFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSGFV 583
+ FW + F+N+ EF YEIL KR+RELSFLN+GV I L D+R FV
Sbjct: 167 VRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFV 226
Query: 584 SYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNNSYNENILCFTNNILQVDGGTH 643
Y+NK+K +HP IF +V++QWN+ + ENI CFTNNI Q DGGTH
Sbjct: 227 EYLNKNKTPIHPNIFY-----FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTH 281
Query: 644 LTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLV 703
L G R+ +TR +N Y+++ + KK+K+ G+D REGL V+S+K+PDPKF+SQTK+KLV
Sbjct: 282 LAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 341
Query: 704 SSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXXXXXXLTRKKNLIDDI 763
SSEV+ VE+ + + L ++L ENP ++K++ +TR+K +D
Sbjct: 342 SSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLA 401
Query: 764 ELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKI 823
L KLADCQE++P L ELY+VEGDSAGGS KQGR+R+ QA+LPL+GK+LN+EKARF+K+
Sbjct: 402 GLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 461
Query: 824 ILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKL 883
+ S++ +DE+N +KLRYH IIIMTDAD+DG+HIR LLLTFFYR+MP++
Sbjct: 462 LSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEI 521
Query: 884 IEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFF 943
+E G++YIAQPPLYK+K G E Y++DD ++Y + IA L + + +
Sbjct: 522 VERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALE 581
Query: 944 KLIDKYNKTIEIVHRLKQIIDISILSAIMSDVIL---NLDTRENAEQFAKKIIKKLNDSN 1000
KL+ +YN T ++++R+++ ++L ++ L +L + ++ ++ +LND
Sbjct: 582 KLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKE 641
Query: 1001 IEIIV-EFD-----QXXXXXXXXXXXXXXXXXXXXXDINFINNKDYKKLVSIISTFXXXX 1054
+FD + D FI +Y++ I T
Sbjct: 642 QHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRR----ICTLGEKL 697
Query: 1055 XXXXXXXXXXXEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNP 1114
++ +F + +++L E+ + QRYKGLGEMNP QLWETTM+P
Sbjct: 698 RGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDP 757
Query: 1115 MIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 1161
R +L+V +KDAI+AD++F TLMGD VE RR FIE NAL A NIDI
Sbjct: 758 ESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804
>TIGR_CMR|ECH_0620 [details] [associations]
symbol:ECH_0620 "DNA gyrase, B subunit" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 HOGENOM:HOG000075155
KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:YP_507430.1 ProteinModelPortal:Q2GGK3
STRING:Q2GGK3 GeneID:3927738 KEGG:ech:ECH_0620 PATRIC:20576692
BioCyc:ECHA205920:GJNR-622-MONOMER Uniprot:Q2GGK3
Length = 798
Score = 1360 (483.8 bits), Expect = 1.4e-159, Sum P(2) = 1.4e-159
Identities = 287/639 (44%), Positives = 393/639 (61%)
Query: 347 YSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIY 406
Y+ASSI +L+GL+AVRKRP MYIGDT DG+GLHH V+E++DN+IDE+LAG+C KI++ I
Sbjct: 4 YNASSITVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVIDNSIDEALAGFCNKIDIVIQ 63
Query: 407 XXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGL 466
GRG SAAE++MT+LHAGGKF+ NSYK+SGGLHG+G+
Sbjct: 64 SDGSVSVVDNGRGIPVDMHEDEGM----SAAEVIMTQLHAGGKFDHNSYKVSGGLHGVGI 119
Query: 467 SCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGD-TNKQGTKI 525
S VN LS +L+LTI RN K ++M F +GI+V + ++G+ T K+GTKI
Sbjct: 120 SVVNALSSWLELTIWRNGKEYFMRFE------------DGITVKSLSVVGENTTKKGTKI 167
Query: 526 HFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXX------- 578
F + IFS+I F Y L+ RIRELSFLN+ + + L D R
Sbjct: 168 TFLPSKNIFSSINFSYSTLENRIRELSFLNSNINMNLKDLRGAQILNSSFGLKDNSKVND 227
Query: 579 -----TSGFVSYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNNSYNENILCFTN 633
T+ FV Y++++K V + ++SM WN+SY EN+LCFTN
Sbjct: 228 IEDRGTAAFVKYLDRNKTAVTKVVH----IEGIVLEHGISLELSMHWNDSYYENMLCFTN 283
Query: 634 NILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPK 693
NI Q DGGTHL G RS +TR IN Y FLKK+K+ I+GED+REGLTCVL+IK+PDPK
Sbjct: 284 NIRQKDGGTHLAGFRSAMTRCINNYATNEGFLKKAKVNILGEDVREGLTCVLAIKLPDPK 343
Query: 694 FNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXXXXXXL 753
F+SQTK+KLVSSE R VE I+ + L + + NP + I L
Sbjct: 344 FSSQTKDKLVSSEARTAVENIVYEKLTNIFETNPKLATSIIERIIRSAKGREAARRARDL 403
Query: 754 TRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVL 813
+ KN D L KLADCQEK+PEL EL+IVEG+SAGGS KQGRDRR QAVL L+GK+L
Sbjct: 404 IKSKNGFDFTILPGKLADCQEKSPELSELFIVEGNSAGGSAKQGRDRRSQAVLSLKGKIL 463
Query: 814 NIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLL 873
N+E+A ++I+ S + + F++EK+RYH++IIMTDAD+DG+HIR LLL
Sbjct: 464 NVERASLDRILSSAEIASLITAIGSNIGTENFDIEKVRYHKVIIMTDADVDGSHIRTLLL 523
Query: 874 TFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIEN 933
TFF+R M ++IE GY+YIAQPPLYK+ E Y+++D Y++ A K+ +++
Sbjct: 524 TFFFRYMREVIEKGYLYIAQPPLYKVTKHKKEFYIKNDDMLHDYIINNAVKD---LTLNA 580
Query: 934 GDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIM 972
G+ N K++ + +I ++I +L +++
Sbjct: 581 GESYSGNSLSKVLHQCMNISKITKSYDRVIPQHVLESLI 619
Score = 216 (81.1 bits), Expect = 1.4e-159, Sum P(2) = 1.4e-159
Identities = 45/80 (56%), Positives = 56/80 (70%)
Query: 1081 NYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGD 1140
N + ++M + QR+KGLGEMN QLW+TT+NP R LLK+KI D +AD IF LMGD
Sbjct: 719 NIIEFGKKDMTL-QRFKGLGEMNADQLWDTTLNPETRTLLKIKIADCEAADSIFSVLMGD 777
Query: 1141 NVELRRKFIELNALHAKNID 1160
VE RR FI NAL+ +NID
Sbjct: 778 FVEPRRDFINNNALNVQNID 797
Score = 47 (21.6 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 330 LLKNKNSYD-------IQDTQESSYSASSIQILEGLEA 360
L+K+KN +D + D QE S S + I+EG A
Sbjct: 403 LIKSKNGFDFTILPGKLADCQEKSPELSELFIVEGNSA 440
Score = 43 (20.2 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 155 RYYLNGLLLSFQK-KNIIAVSSDGHRLTYYQVNI 187
+YY+N +++ + K++IA+ DG +Y + I
Sbjct: 668 KYYINSAMMNSEDIKHVIAMC-DGIEDIFYNMPI 700
>UNIPROTKB|Q9KVX3 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
EMBL:AE003852 GenomeReviews:AE003852_GR Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009330 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF
ProtClustDB:PRK14939 PIR:H82376 RefSeq:NP_062599.1
ProteinModelPortal:Q9KVX3 SMR:Q9KVX3 PRIDE:Q9KVX3 DNASU:2615137
GeneID:2615137 KEGG:vch:VC0015 PATRIC:20079078 Uniprot:Q9KVX3
Length = 805
Score = 1526 (542.2 bits), Expect = 1.3e-158, Sum P(2) = 1.3e-158
Identities = 316/737 (42%), Positives = 447/737 (60%)
Query: 435 SAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYG 494
SAAE++MT LHAGGKF+ NSYK+SGGLHG+G+S VN LS + LTI R KIH + +G
Sbjct: 89 SAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHG 148
Query: 495 VLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFL 554
V Q +P+ ++G+T + GT + FW + F+NIEFHY+IL KR+RELSFL
Sbjct: 149 VPQ------------APLAVVGETERTGTTVRFWPSAQTFTNIEFHYDILAKRLRELSFL 196
Query: 555 NNGVCITLIDERXXXXXXXXXXXX-TSGFVSYINKSKLVVHPTIFQAXXXXXXXXXXXXX 613
N+GV I L DER FV+++N++K +H +F
Sbjct: 197 NSGVSIKLTDEREEDKKDHFMYEGGIQAFVTHLNRNKTPIHEKVFH----FNQEREDGIS 252
Query: 614 XDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEII 673
+V+MQWN+ + ENI CFTNNI Q DGGTHL G R +TR +N Y+++ F KK++
Sbjct: 253 VEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATS 312
Query: 674 GEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLI 733
G+D REGLT V+S+K+PDPKF+SQTK+KLVSSEV+ VE + + L DFL ENP E+K +
Sbjct: 313 GDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNV 372
Query: 734 CXXXXXXXXXXXXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGS 793
C +TR+K +D L KLADCQEK+P L ELYIVEGDSAGGS
Sbjct: 373 CSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGS 432
Query: 794 VKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYH 853
KQGR+R+ QA+LPL+GK+LN+EKARF+K++ S++ +DE+N +KLRYH
Sbjct: 433 AKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYH 492
Query: 854 RIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIE 913
IIIMTDAD+DG+HIR LLLTFFYR+MP+LIE GYIYIAQPPLYK+K G E Y++D+
Sbjct: 493 NIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGKQEQYIKDEEA 552
Query: 914 EERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMS 973
+Y + +A +L + + KL+ +YN I++V R+ + ++L ++
Sbjct: 553 MNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMSRRYPYAMLHELIY 612
Query: 974 DVILNLDT---RENAEQFAKKIIKKLNDSNI-----EIIVEFD-QXXXXXXXXXXXXXXX 1024
+N + + E + ++++++LN + ++VE + +
Sbjct: 613 VPRINAELCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELNVYLPKIQVRTHGV 672
Query: 1025 XXXXXXDINFINNKDYKKLVSIISTFXXXXXXXXXXXXXXXEKIKKYTANNFYKIINYLR 1084
+ IN+K+Y KL + E+++ ++ F +++L
Sbjct: 673 THEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRG--ERVQPISS--FAAALDWLI 728
Query: 1085 NEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVEL 1144
E+ + QRYKGLGEMNP QLWETTM+P R +++V I+DA+ AD++F TLMGD VE
Sbjct: 729 KESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLMGDQVEP 788
Query: 1145 RRKFIELNALHAKNIDI 1161
RR FIE NAL N+D+
Sbjct: 789 RRAFIETNALKVANLDV 805
Score = 600 (216.3 bits), Expect = 1.3e-57, P = 1.3e-57
Identities = 123/255 (48%), Positives = 163/255 (63%)
Query: 345 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVT 404
++Y +SSI++L+GL+AVRKRP MYIGDT DGTGLHH VFE++DN+IDE+LAGYC I VT
Sbjct: 3 NNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVVT 62
Query: 405 IYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGI 464
I+ GRG SAAE++MT LHAGGKF+ NSYK+SGGLHG+
Sbjct: 63 IHEDNSVSVSDDGRGIPTEMHPEEKV----SAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 118
Query: 465 GLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTK 524
G+S VN LS + LTI R KIH + +GV Q +P+ ++G+T + GT
Sbjct: 119 GVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQ------------APLAVVGETERTGTT 166
Query: 525 IHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXX-TSGFV 583
+ FW + F+NIEFHY+IL KR+RELSFLN+GV I L DER FV
Sbjct: 167 VRFWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFV 226
Query: 584 SYINKSKLVVHPTIF 598
+++N++K +H +F
Sbjct: 227 THLNRNKTPIHEKVF 241
Score = 41 (19.5 bits), Expect = 1.3e-158, Sum P(2) = 1.3e-158
Identities = 9/42 (21%), Positives = 24/42 (57%)
Query: 157 YLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDII 198
Y ++++ + N ++VS DG + +++ ++K S+ I+
Sbjct: 55 YCKDIVVTIHEDNSVSVSDDGRGIPT-EMHPEEKVSAAEVIM 95
>TIGR_CMR|VC_0015 [details] [associations]
symbol:VC_0015 "DNA gyrase, subunit B" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009330
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187
KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 PROSITE:PS50880
OMA:IFETTEF ProtClustDB:PRK14939 PIR:H82376 RefSeq:NP_062599.1
ProteinModelPortal:Q9KVX3 SMR:Q9KVX3 PRIDE:Q9KVX3 DNASU:2615137
GeneID:2615137 KEGG:vch:VC0015 PATRIC:20079078 Uniprot:Q9KVX3
Length = 805
Score = 1526 (542.2 bits), Expect = 1.3e-158, Sum P(2) = 1.3e-158
Identities = 316/737 (42%), Positives = 447/737 (60%)
Query: 435 SAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYG 494
SAAE++MT LHAGGKF+ NSYK+SGGLHG+G+S VN LS + LTI R KIH + +G
Sbjct: 89 SAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHG 148
Query: 495 VLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFL 554
V Q +P+ ++G+T + GT + FW + F+NIEFHY+IL KR+RELSFL
Sbjct: 149 VPQ------------APLAVVGETERTGTTVRFWPSAQTFTNIEFHYDILAKRLRELSFL 196
Query: 555 NNGVCITLIDERXXXXXXXXXXXX-TSGFVSYINKSKLVVHPTIFQAXXXXXXXXXXXXX 613
N+GV I L DER FV+++N++K +H +F
Sbjct: 197 NSGVSIKLTDEREEDKKDHFMYEGGIQAFVTHLNRNKTPIHEKVFH----FNQEREDGIS 252
Query: 614 XDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEII 673
+V+MQWN+ + ENI CFTNNI Q DGGTHL G R +TR +N Y+++ F KK++
Sbjct: 253 VEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATS 312
Query: 674 GEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLI 733
G+D REGLT V+S+K+PDPKF+SQTK+KLVSSEV+ VE + + L DFL ENP E+K +
Sbjct: 313 GDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNV 372
Query: 734 CXXXXXXXXXXXXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGS 793
C +TR+K +D L KLADCQEK+P L ELYIVEGDSAGGS
Sbjct: 373 CSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGS 432
Query: 794 VKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYH 853
KQGR+R+ QA+LPL+GK+LN+EKARF+K++ S++ +DE+N +KLRYH
Sbjct: 433 AKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYH 492
Query: 854 RIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIE 913
IIIMTDAD+DG+HIR LLLTFFYR+MP+LIE GYIYIAQPPLYK+K G E Y++D+
Sbjct: 493 NIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGKQEQYIKDEEA 552
Query: 914 EERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMS 973
+Y + +A +L + + KL+ +YN I++V R+ + ++L ++
Sbjct: 553 MNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMSRRYPYAMLHELIY 612
Query: 974 DVILNLDT---RENAEQFAKKIIKKLNDSNI-----EIIVEFD-QXXXXXXXXXXXXXXX 1024
+N + + E + ++++++LN + ++VE + +
Sbjct: 613 VPRINAELCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELNVYLPKIQVRTHGV 672
Query: 1025 XXXXXXDINFINNKDYKKLVSIISTFXXXXXXXXXXXXXXXEKIKKYTANNFYKIINYLR 1084
+ IN+K+Y KL + E+++ ++ F +++L
Sbjct: 673 THEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRG--ERVQPISS--FAAALDWLI 728
Query: 1085 NEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVEL 1144
E+ + QRYKGLGEMNP QLWETTM+P R +++V I+DA+ AD++F TLMGD VE
Sbjct: 729 KESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLMGDQVEP 788
Query: 1145 RRKFIELNALHAKNIDI 1161
RR FIE NAL N+D+
Sbjct: 789 RRAFIETNALKVANLDV 805
Score = 600 (216.3 bits), Expect = 1.3e-57, P = 1.3e-57
Identities = 123/255 (48%), Positives = 163/255 (63%)
Query: 345 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVT 404
++Y +SSI++L+GL+AVRKRP MYIGDT DGTGLHH VFE++DN+IDE+LAGYC I VT
Sbjct: 3 NNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVVT 62
Query: 405 IYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGI 464
I+ GRG SAAE++MT LHAGGKF+ NSYK+SGGLHG+
Sbjct: 63 IHEDNSVSVSDDGRGIPTEMHPEEKV----SAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 118
Query: 465 GLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTK 524
G+S VN LS + LTI R KIH + +GV Q +P+ ++G+T + GT
Sbjct: 119 GVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQ------------APLAVVGETERTGTT 166
Query: 525 IHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXX-TSGFV 583
+ FW + F+NIEFHY+IL KR+RELSFLN+GV I L DER FV
Sbjct: 167 VRFWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFV 226
Query: 584 SYINKSKLVVHPTIF 598
+++N++K +H +F
Sbjct: 227 THLNRNKTPIHEKVF 241
Score = 41 (19.5 bits), Expect = 1.3e-158, Sum P(2) = 1.3e-158
Identities = 9/42 (21%), Positives = 24/42 (57%)
Query: 157 YLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDII 198
Y ++++ + N ++VS DG + +++ ++K S+ I+
Sbjct: 55 YCKDIVVTIHEDNSVSVSDDGRGIPT-EMHPEEKVSAAEVIM 95
>TIGR_CMR|APH_0716 [details] [associations]
symbol:APH_0716 "DNA gyrase, B subunit" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003916 "DNA topoisomerase
activity" evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 GO:GO:0006261 EMBL:CP000235
GenomeReviews:CP000235_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939
RefSeq:YP_505297.1 ProteinModelPortal:Q2GK04 SMR:Q2GK04
STRING:Q2GK04 GeneID:3930586 KEGG:aph:APH_0716 PATRIC:20950116
BioCyc:APHA212042:GHPM-734-MONOMER Uniprot:Q2GK04
Length = 793
Score = 1498 (532.4 bits), Expect = 1.3e-153, P = 1.3e-153
Identities = 338/827 (40%), Positives = 471/827 (56%)
Query: 345 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVT 404
SSY+ASSI +L GL+AV+KRP MYIGDT DG+GLHH +E++DNAIDE+LAG+C KI++
Sbjct: 2 SSYNASSITVLRGLDAVKKRPGMYIGDTDDGSGLHHMAYEVIDNAIDEALAGFCNKIDIV 61
Query: 405 IYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGI 464
I GRG SAAE++MT+LHAGGKF+ NSYK+SGGLHG+
Sbjct: 62 IAADGSISVTDNGRGIPIDIHEEEGI----SAAEVIMTQLHAGGKFDHNSYKVSGGLHGV 117
Query: 465 GLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDT-NKQGT 523
G+S VN LS +L+L I + + ++M F G +V+P+K++G+ NK+GT
Sbjct: 118 GVSVVNALSSWLELVIYKEGREYFMRFE------------EGKAVAPLKMVGECGNKKGT 165
Query: 524 KIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXX----XXXXXXXXXXT 579
+ F +FS +F Y L+ RIRELSFLN+ V I+L D R T
Sbjct: 166 CVRFMPSSDVFSFTDFSYSTLENRIRELSFLNSNVSISLKDLRESPVLESNFGNVSDAAT 225
Query: 580 SG---FVSYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNNSYNENILCFTNNIL 636
G FV Y++++K V P I +VSM WN+SY EN+LCFTNNI
Sbjct: 226 KGVSLFVEYLDRNKTPVTPVI----TLSGIMSGYEISVEVSMCWNDSYYENMLCFTNNIR 281
Query: 637 QVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNS 696
Q +GGTHL G RS +TR +N Y +LKK+K+ IIGED+REGLTCVLSIK+PDP+F+S
Sbjct: 282 QREGGTHLAGFRSALTRCVNNYATNEGYLKKAKVSIIGEDVREGLTCVLSIKMPDPRFSS 341
Query: 697 QTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXXXXXXLTRK 756
QTK+KLVSSE R VE I+ + L + NP + + + +
Sbjct: 342 QTKDKLVSSEARLVVESIMFEKLSSIFETNPKLAMSVVERVIRSAKGREAARKAREVIKS 401
Query: 757 KNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIE 816
+ +D + KLADCQEK+PEL EL+IVEG+SAGGS KQGRDRR QAVL LRGK+LN+E
Sbjct: 402 RGTLDFTSIPGKLADCQEKSPELSELFIVEGNSAGGSAKQGRDRRCQAVLSLRGKILNVE 461
Query: 817 KARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFF 876
+ ++ + S + F++ K+RYH+IIIMTDAD+DG+HIR LLLTFF
Sbjct: 462 RVGLDRTLSSSEITSLIMAIGSNIGIGSFDISKVRYHKIIIMTDADVDGSHIRTLLLTFF 521
Query: 877 YRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIE--NG 934
+R M +LI+ GY+YIAQPPLYK+ + Y+++D Y++ A KN+ L +G
Sbjct: 522 FRYMRELIDAGYLYIAQPPLYKLTKHKKDTYIKNDEALSDYIVGNATKNLVLSGAGECSG 581
Query: 935 DIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIK 994
D +K ++ K + I +I+ +L A++ + + + + +I+
Sbjct: 582 DELKA-----VLRKCVRIANITKTYSRIVPQEVLEALI------VRYKRHGMGSSSEIMA 630
Query: 995 KLNDSNIEIIVEFDQXXXXXXXXXXXXXXXXXXXXXDINFINNKDYKKLVSIISTFXXXX 1054
+N E + D +F+N +D + ++S++
Sbjct: 631 YMNSMFPEYEWNVEVLEDGRLQILKLSQGMVDRYYLDADFMNTRDVQTILSVLDGIENVF 690
Query: 1055 XXXXXXXXXXXEKIKKYTANNFYK-IINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMN 1113
I+ ++ ++ + R + M + QR+KGLGEMN QLW+TT+N
Sbjct: 691 TEDTVLTAKDCT-IRVHSPCVLASSVVEFGRKD---MAL-QRFKGLGEMNADQLWDTTLN 745
Query: 1114 PMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNID 1160
P R LLKVKI DA +AD IF LMGD VE RR FI NAL +NID
Sbjct: 746 PQTRTLLKVKIADAEAADAIFSVLMGDFVEPRRDFINNNALKVQNID 792
>UNIPROTKB|A6UX65 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:381754
"Pseudomonas aeruginosa PA7" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 EMBL:CP000744 GenomeReviews:CP000744_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187
HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939
RefSeq:YP_001345400.1 ProteinModelPortal:A6UX65 SMR:A6UX65
STRING:A6UX65 GeneID:5358744 KEGG:pap:PSPA7_0004 PATRIC:19821910
BioCyc:PAER381754:GHMY-79-MONOMER Uniprot:A6UX65
Length = 806
Score = 1267 (451.1 bits), Expect = 6.4e-153, Sum P(2) = 6.4e-153
Identities = 258/528 (48%), Positives = 342/528 (64%)
Query: 435 SAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYG 494
SAAE++MT LHAGGKF+ N+YK+SGGLHG+G+S VN LS L+LTI R+ K+ + +G
Sbjct: 91 SAAEVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSHELRLTIRRHNKVWEQVYHHG 150
Query: 495 VLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFL 554
V Q P++ +G+T+ GT++HF + FSNI F ++IL KRIRELSFL
Sbjct: 151 VPQ------------FPLREVGETDGSGTEVHFKPSPETFSNIHFSWDILAKRIRELSFL 198
Query: 555 NNGVCITLIDERXXXXXXXXXXXXTSGFVSYINKSKLVVHPTIFQAXXXXXXXXXXXXXX 614
N+GV I L DER FV Y+N +K V+ Q
Sbjct: 199 NSGVGILLRDERTGKEELFKYEGGLKAFVEYLNTNKSAVN----QVFHFNVQREEDGVGV 254
Query: 615 DVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIG 674
+V++QWN+S+NENILCFTNNI Q DGGTHL G RS +TR +N YIE KK KI G
Sbjct: 255 EVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNNYIEAEGLAKKFKIATTG 314
Query: 675 EDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLIC 734
+D REGLT ++S+K+PDPKF+SQTK+KLVSSEV+ VE+ + K DFL ENP E+K +
Sbjct: 315 DDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFADFLLENPNEAKAVV 374
Query: 735 XXXXXXXXXXXXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSV 794
+TR+K +D L KLADCQEK+P L ELYIVEGDSAGGS
Sbjct: 375 GKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSA 434
Query: 795 KQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHR 854
KQGR+RR QA+LPL+GK+LN+EKARF+K++ S++ ++E+N++KLRYH
Sbjct: 435 KQGRNRRTQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGCGIGREEYNIDKLRYHN 494
Query: 855 IIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEE 914
IIIMTDAD+DG+HIR LLLTFF+R+MP+LIE GY+YIAQPPLYK+K G E Y++DD
Sbjct: 495 IIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLYKVKRGKQEQYIKDDQAM 554
Query: 915 ERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQI 962
E YM + A ++ L E+ + KL+++Y I + RL ++
Sbjct: 555 EEYMTQSALEDASLHVNEHAPGLAGAALEKLVNEYRGVIATLKRLSRL 602
Score = 575 (207.5 bits), Expect = 2.7e-75, Sum P(2) = 2.7e-75
Identities = 119/253 (47%), Positives = 163/253 (64%)
Query: 342 TQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKI 401
++ ++Y +SSI++L+GL+AVRKRP MYIGDT DGTGLHH VFE++DN+IDE+LAGYC++I
Sbjct: 2 SENNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSEI 61
Query: 402 NVTIYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGL 461
++TI+ GRG SAAE++MT LHAGGKF+ N+YK+SGGL
Sbjct: 62 SITIHTDESITVRDNGRGIPVDIHKEEGV----SAAEVIMTVLHAGGKFDDNTYKVSGGL 117
Query: 462 HGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQ 521
HG+G+S VN LS L+LTI R+ K+ + +GV Q P++ +G+T+
Sbjct: 118 HGVGVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQ------------FPLREVGETDGS 165
Query: 522 GTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSG 581
GT++HF + FSNI F ++IL KRIRELSFLN+GV I L DER
Sbjct: 166 GTEVHFKPSPETFSNIHFSWDILAKRIRELSFLNSGVGILLRDERTGKEELFKYEGGLKA 225
Query: 582 FVSYINKSKLVVH 594
FV Y+N +K V+
Sbjct: 226 FVEYLNTNKSAVN 238
Score = 246 (91.7 bits), Expect = 6.4e-153, Sum P(2) = 6.4e-153
Identities = 52/93 (55%), Positives = 65/93 (69%)
Query: 1069 KKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAI 1128
+K + F +++L E QRYKGLGEMNP QLWETTM+P +R +LKV I+DAI
Sbjct: 714 RKRPISAFKDGLDWLMAEGTKRHSIQRYKGLGEMNPEQLWETTMDPNVRRMLKVTIEDAI 773
Query: 1129 SADKIFMTLMGDNVELRRKFIELNALHAKNIDI 1161
+AD+IF TLMGD VE RR FIE NAL N+D+
Sbjct: 774 AADQIFNTLMGDAVEPRRDFIESNALAVSNLDV 806
Score = 39 (18.8 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 28 ILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINI 70
ILP+ IL + + LS+ + T G G NI
Sbjct: 445 ILPLKGKILNVEKARFDKMLSSQEVGTLITALGCGIGREEYNI 487
>UNIPROTKB|Q3KMH2 [details] [associations]
symbol:gyrB_1 "DNA gyrase subunit B" species:315277
"Chlamydia trachomatis A/HAR-13" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 EMBL:CP000051
GenomeReviews:CP000051_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:YP_327998.1 ProteinModelPortal:Q3KMH2
STRING:Q3KMH2 GeneID:3687234 KEGG:cta:CTA_0208 PATRIC:32022282
BioCyc:CTRA315277:GI4C-250-MONOMER Uniprot:Q3KMH2
Length = 804
Score = 1245 (443.3 bits), Expect = 6.6e-149, Sum P(2) = 6.6e-149
Identities = 257/594 (43%), Positives = 358/594 (60%)
Query: 341 DTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTK 400
D QE Y AS+I +LEGL+AVR+RP MYIGDT TGLHH V+E++DN+IDE++AG+CT+
Sbjct: 2 DAQEKKYDASAITVLEGLQAVRERPGMYIGDTGV-TGLHHLVYEVVDNSIDEAMAGFCTE 60
Query: 401 INVTIYXXXXXXXXXXGRGXXXXXXXXXXXXXXR--SAAEIVMTELHAGGKFNKNSYKIS 458
+ V I GRG R SA E+V+T LHAGGKF+K+SYK+S
Sbjct: 61 VVVRILEDGGISISDNGRGIPIQIHEKESAKQGREISALEVVLTVLHAGGKFDKDSYKVS 120
Query: 459 GGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDT 518
GGLHG+G+SCVN LS + ++ + + MEF G ++ ++++G T
Sbjct: 121 GGLHGVGVSCVNALSEKFIAKVFKDGQAYSMEFS------------RGAPLTTLQVLGPT 168
Query: 519 NKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXX 578
+K+GT++ F+ D IFS F IL KR+REL+FLN GV I D+R
Sbjct: 169 DKRGTEVLFYPDPAIFSTCVFDRAILMKRLRELAFLNRGVTIVFEDDRDTGFDKVVFFYE 228
Query: 579 --TSGFVSYINKSKLVVHPT-IFQAXXXXXXXXXXXXXXDVSMQWNNSYNENILCFTNNI 635
FVSY+N++K ++ P I+ + ++QWN+ Y+E I + NNI
Sbjct: 229 GGIQSFVSYLNQNKEILFPNPIYMQGSRPGDDGDIEF--EAALQWNSGYSELIYSYANNI 286
Query: 636 LQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFN 695
GGTHLTG + +TRA+N YI+ + K K+ + GEDI+EGL ++S+K+P+P+F
Sbjct: 287 PTRQGGTHLTGFSTALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFE 346
Query: 696 SQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXXXXXXLTR 755
QTK KL +S+V ++I + L F +ENP +K I LT
Sbjct: 347 GQTKQKLGNSDVGSVSQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTL 406
Query: 756 KKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNI 815
+K+ +D L KL DC EK+PE CE+YIVEGDSAGGS KQGRDRRFQA+LP+RGK+LN+
Sbjct: 407 RKSALDSARLPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNV 466
Query: 816 EKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTF 875
EKAR +K+ +++ +D FNL KLRY RIIIMTDAD+DG+HIR LLLTF
Sbjct: 467 EKARLQKVFQNQEIGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTF 526
Query: 876 FYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLI 929
FYR M LIE +YIAQPPLY++ + Y+ + E + Y+L + K +++
Sbjct: 527 FYRHMSALIENECVYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIV 580
Score = 230 (86.0 bits), Expect = 6.6e-149, Sum P(2) = 6.6e-149
Identities = 48/97 (49%), Positives = 63/97 (64%)
Query: 1067 KIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKD 1126
KI Y ++I+YL+ + QRYKGLGEMN QLW+TTMNP R L++V +KD
Sbjct: 708 KISPYVCYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKD 767
Query: 1127 AISADKIFMTLMGDNVELRRKFIELNALHAK--NIDI 1161
A+ AD IF LMG+ V RR+FIE +AL + N+DI
Sbjct: 768 AVEADHIFTMLMGEEVPPRREFIESHALSIRMNNLDI 804
Score = 48 (22.0 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 25/119 (21%), Positives = 50/119 (42%)
Query: 28 ILPILSNILVCKNSEKISFLSTDTEV-QITTYTAVGYGNSSINIIVAARKFIDILRSLPE 86
ILPI IL + + ++ + + E+ I G G + N+ K I I+ +
Sbjct: 456 ILPIRGKILNVEKA-RLQKVFQNQEIGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDA-D 513
Query: 87 TEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLK-CILNM 144
+ I F + + + + + P+ ++ K DF + LS+K + +LN+
Sbjct: 514 VDGSHIRTLLLTFFYRHMSALIENECVYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNL 572
Score = 42 (19.8 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVR 286
D++Y++S K +L+N + I+ +D L+ +R
Sbjct: 555 DFRYILSEKEMDGYLLNLGT-----KESQIVFDDTLRDLR 589
>UNIPROTKB|Q74H89 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:243231
"Geobacter sulfurreducens PCA" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 HOGENOM:HOG000075155
KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 HSSP:P06982 RefSeq:NP_951065.1
ProteinModelPortal:Q74H89 SMR:Q74H89 GeneID:2686080
KEGG:gsu:GSU0003 PATRIC:22022743 BioCyc:GSUL243231:GH27-3-MONOMER
Uniprot:Q74H89
Length = 795
Score = 1163 (414.5 bits), Expect = 2.4e-142, Sum P(2) = 2.4e-142
Identities = 243/570 (42%), Positives = 353/570 (61%)
Query: 434 RSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRY 493
+ AAE+ +T LHAGGKF+ SYK+SGGLHG+G+S VN LSR L+L I R+ K++ +
Sbjct: 91 KPAAEVALTVLHAGGKFDNTSYKVSGGLHGVGVSVVNALSRKLELEIRRDGKVYRQSYAC 150
Query: 494 GVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSF 553
G Q +P++++G+T K+GTKI F D+ IF EF +++L +R+REL+F
Sbjct: 151 GDPQ------------TPLEVMGETKKRGTKITFLPDDTIFETTEFSFDVLSQRLRELAF 198
Query: 554 LNNGVCITLIDERXXXXXXXXXXXX-TSGFVSYINKSKLVVHPTIFQAXXXXXXXXXXXX 612
LN GV IT+ DER FV Y+N+++ +HP
Sbjct: 199 LNAGVRITITDEREEGKHHDFHYEGGIVSFVEYLNRNRTALHPKPIY-----FKGEKAGV 253
Query: 613 XXDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEI 672
+V++Q+N+SY+E + F NNI +GGTHL G R+ +TR +N Y NE LKK K+ I
Sbjct: 254 EMEVALQYNDSYDEKVFSFANNINTHEGGTHLVGFRAALTRTMNTYAAANELLKKEKVAI 313
Query: 673 IGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKL 732
GED+REGLT V+S+KIP P+F QTK KL +SEV+ VE ++ + L FL+ENP +K
Sbjct: 314 SGEDLREGLTAVISVKIPQPQFEGQTKTKLGNSEVKGYVESLMNEKLAVFLEENPKIAKD 373
Query: 733 ICXXXXXXXXXXXXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGG 792
I LTR+K +D L KLADCQE++P LCELY+VEGDSAGG
Sbjct: 374 IIGKSIEAARAREAARKARELTRRKGALDISNLPGKLADCQERDPALCELYLVEGDSAGG 433
Query: 793 SVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRY 852
S KQGRDR+FQA+LPL+GK+LN+EKARF+K++ S++ +D+F++ KLRY
Sbjct: 434 SAKQGRDRKFQAILPLKGKILNVEKARFDKMLSSQEIGTLITALGTGIGKDDFDIAKLRY 493
Query: 853 HRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDI 912
HRII+MTDAD+DG+HI LLLTFF+R+MP+++E G++YIAQPPLYK+K G E YLR++
Sbjct: 494 HRIIVMTDADVDGSHILTLLLTFFFRQMPEVVERGHLYIAQPPLYKVKRGRKELYLRNEA 553
Query: 913 EEERYMLKIAFKNVKLISIENGDIIKENYFFK-LIDKYNKTIEIVHRLKQIIDISILSAI 971
+ Y+L+ +++ L+ +E+G+ + Y K +I + +E L +++ I +
Sbjct: 554 AMQAYLLEEGTEDM-LLFLESGE---KTYSGKQIIPILKQLVEYRTILDKVVRKGINEEL 609
Query: 972 MSDVILNLDTRENAEQFAKKIIKKLNDSNI 1001
+ V L L + E + + N S +
Sbjct: 610 IR-VFLRLGVKGGIEDMEQLVPFLTNISRV 638
Score = 539 (194.8 bits), Expect = 5.4e-71, Sum P(2) = 5.4e-71
Identities = 114/256 (44%), Positives = 156/256 (60%)
Query: 341 DTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTK 400
D Q Y A I++LEGLEAVRKRP MYIG T+ GLHH V+EI+DN+IDE+LAGYC +
Sbjct: 3 DEQNYDYGADKIKVLEGLEAVRKRPAMYIGSTA-AQGLHHLVYEIVDNSIDEALAGYCNE 61
Query: 401 INVTIYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGG 460
+NVTI+ GRG + AAE+ +T LHAGGKF+ SYK+SGG
Sbjct: 62 VNVTIHLDGSLTVVDNGRGIPTDIHPTEG----KPAAEVALTVLHAGGKFDNTSYKVSGG 117
Query: 461 LHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNK 520
LHG+G+S VN LSR L+L I R+ K++ + G Q +P++++G+T K
Sbjct: 118 LHGVGVSVVNALSRKLELEIRRDGKVYRQSYACGDPQ------------TPLEVMGETKK 165
Query: 521 QGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXX-T 579
+GTKI F D+ IF EF +++L +R+REL+FLN GV IT+ DER
Sbjct: 166 RGTKITFLPDDTIFETTEFSFDVLSQRLRELAFLNAGVRITITDEREEGKHHDFHYEGGI 225
Query: 580 SGFVSYINKSKLVVHP 595
FV Y+N+++ +HP
Sbjct: 226 VSFVEYLNRNRTALHP 241
Score = 250 (93.1 bits), Expect = 2.4e-142, Sum P(2) = 2.4e-142
Identities = 50/83 (60%), Positives = 62/83 (74%)
Query: 1079 IINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLM 1138
++++ + A+ + QRYKGLGEMNP QLWETTM P+ R LL+VKI+DAI AD IF LM
Sbjct: 713 LLSFFMDSAKKGLSIQRYKGLGEMNPEQLWETTMEPVNRTLLQVKIEDAIEADTIFTILM 772
Query: 1139 GDNVELRRKFIELNALHAKNIDI 1161
GD VE RR FIE NAL+ N+DI
Sbjct: 773 GDQVEPRRDFIEQNALNVSNLDI 795
Score = 40 (19.1 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 28 ILPILSNILVCKNSEKISFLSTDTEVQI-TTYTAVGYGNSSINIIVAARKFIDIL 81
ILP+ IL N EK F + +I T TA+G G + +A ++ I+
Sbjct: 446 ILPLKGKIL---NVEKARFDKMLSSQEIGTLITALGTGIGKDDFDIAKLRYHRII 497
Score = 38 (18.4 bits), Expect = 5.3e-16, Sum P(2) = 5.3e-16
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 39 KNSEKISFLSTDTEVQITTYT 59
K KI+FL DT + T ++
Sbjct: 165 KRGTKITFLPDDTIFETTEFS 185
>TIGR_CMR|GSU_0003 [details] [associations]
symbol:GSU_0003 "DNA gyrase, B subunit" species:243231
"Geobacter sulfurreducens PCA" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006265 "DNA topological change"
evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898 InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 EMBL:AE017180
GenomeReviews:AE017180_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939 HSSP:P06982
RefSeq:NP_951065.1 ProteinModelPortal:Q74H89 SMR:Q74H89
GeneID:2686080 KEGG:gsu:GSU0003 PATRIC:22022743
BioCyc:GSUL243231:GH27-3-MONOMER Uniprot:Q74H89
Length = 795
Score = 1163 (414.5 bits), Expect = 2.4e-142, Sum P(2) = 2.4e-142
Identities = 243/570 (42%), Positives = 353/570 (61%)
Query: 434 RSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRY 493
+ AAE+ +T LHAGGKF+ SYK+SGGLHG+G+S VN LSR L+L I R+ K++ +
Sbjct: 91 KPAAEVALTVLHAGGKFDNTSYKVSGGLHGVGVSVVNALSRKLELEIRRDGKVYRQSYAC 150
Query: 494 GVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSF 553
G Q +P++++G+T K+GTKI F D+ IF EF +++L +R+REL+F
Sbjct: 151 GDPQ------------TPLEVMGETKKRGTKITFLPDDTIFETTEFSFDVLSQRLRELAF 198
Query: 554 LNNGVCITLIDERXXXXXXXXXXXX-TSGFVSYINKSKLVVHPTIFQAXXXXXXXXXXXX 612
LN GV IT+ DER FV Y+N+++ +HP
Sbjct: 199 LNAGVRITITDEREEGKHHDFHYEGGIVSFVEYLNRNRTALHPKPIY-----FKGEKAGV 253
Query: 613 XXDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEI 672
+V++Q+N+SY+E + F NNI +GGTHL G R+ +TR +N Y NE LKK K+ I
Sbjct: 254 EMEVALQYNDSYDEKVFSFANNINTHEGGTHLVGFRAALTRTMNTYAAANELLKKEKVAI 313
Query: 673 IGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKL 732
GED+REGLT V+S+KIP P+F QTK KL +SEV+ VE ++ + L FL+ENP +K
Sbjct: 314 SGEDLREGLTAVISVKIPQPQFEGQTKTKLGNSEVKGYVESLMNEKLAVFLEENPKIAKD 373
Query: 733 ICXXXXXXXXXXXXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGG 792
I LTR+K +D L KLADCQE++P LCELY+VEGDSAGG
Sbjct: 374 IIGKSIEAARAREAARKARELTRRKGALDISNLPGKLADCQERDPALCELYLVEGDSAGG 433
Query: 793 SVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRY 852
S KQGRDR+FQA+LPL+GK+LN+EKARF+K++ S++ +D+F++ KLRY
Sbjct: 434 SAKQGRDRKFQAILPLKGKILNVEKARFDKMLSSQEIGTLITALGTGIGKDDFDIAKLRY 493
Query: 853 HRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDI 912
HRII+MTDAD+DG+HI LLLTFF+R+MP+++E G++YIAQPPLYK+K G E YLR++
Sbjct: 494 HRIIVMTDADVDGSHILTLLLTFFFRQMPEVVERGHLYIAQPPLYKVKRGRKELYLRNEA 553
Query: 913 EEERYMLKIAFKNVKLISIENGDIIKENYFFK-LIDKYNKTIEIVHRLKQIIDISILSAI 971
+ Y+L+ +++ L+ +E+G+ + Y K +I + +E L +++ I +
Sbjct: 554 AMQAYLLEEGTEDM-LLFLESGE---KTYSGKQIIPILKQLVEYRTILDKVVRKGINEEL 609
Query: 972 MSDVILNLDTRENAEQFAKKIIKKLNDSNI 1001
+ V L L + E + + N S +
Sbjct: 610 IR-VFLRLGVKGGIEDMEQLVPFLTNISRV 638
Score = 539 (194.8 bits), Expect = 5.4e-71, Sum P(2) = 5.4e-71
Identities = 114/256 (44%), Positives = 156/256 (60%)
Query: 341 DTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTK 400
D Q Y A I++LEGLEAVRKRP MYIG T+ GLHH V+EI+DN+IDE+LAGYC +
Sbjct: 3 DEQNYDYGADKIKVLEGLEAVRKRPAMYIGSTA-AQGLHHLVYEIVDNSIDEALAGYCNE 61
Query: 401 INVTIYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGG 460
+NVTI+ GRG + AAE+ +T LHAGGKF+ SYK+SGG
Sbjct: 62 VNVTIHLDGSLTVVDNGRGIPTDIHPTEG----KPAAEVALTVLHAGGKFDNTSYKVSGG 117
Query: 461 LHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNK 520
LHG+G+S VN LSR L+L I R+ K++ + G Q +P++++G+T K
Sbjct: 118 LHGVGVSVVNALSRKLELEIRRDGKVYRQSYACGDPQ------------TPLEVMGETKK 165
Query: 521 QGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXX-T 579
+GTKI F D+ IF EF +++L +R+REL+FLN GV IT+ DER
Sbjct: 166 RGTKITFLPDDTIFETTEFSFDVLSQRLRELAFLNAGVRITITDEREEGKHHDFHYEGGI 225
Query: 580 SGFVSYINKSKLVVHP 595
FV Y+N+++ +HP
Sbjct: 226 VSFVEYLNRNRTALHP 241
Score = 250 (93.1 bits), Expect = 2.4e-142, Sum P(2) = 2.4e-142
Identities = 50/83 (60%), Positives = 62/83 (74%)
Query: 1079 IINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLM 1138
++++ + A+ + QRYKGLGEMNP QLWETTM P+ R LL+VKI+DAI AD IF LM
Sbjct: 713 LLSFFMDSAKKGLSIQRYKGLGEMNPEQLWETTMEPVNRTLLQVKIEDAIEADTIFTILM 772
Query: 1139 GDNVELRRKFIELNALHAKNIDI 1161
GD VE RR FIE NAL+ N+DI
Sbjct: 773 GDQVEPRRDFIEQNALNVSNLDI 795
Score = 40 (19.1 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 28 ILPILSNILVCKNSEKISFLSTDTEVQI-TTYTAVGYGNSSINIIVAARKFIDIL 81
ILP+ IL N EK F + +I T TA+G G + +A ++ I+
Sbjct: 446 ILPLKGKIL---NVEKARFDKMLSSQEIGTLITALGTGIGKDDFDIAKLRYHRII 497
Score = 38 (18.4 bits), Expect = 5.3e-16, Sum P(2) = 5.3e-16
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 39 KNSEKISFLSTDTEVQITTYT 59
K KI+FL DT + T ++
Sbjct: 165 KRGTKITFLPDDTIFETTEFS 185
>TIGR_CMR|NSE_0721 [details] [associations]
symbol:NSE_0721 "DNA gyrase, B subunit" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:YP_506597.1 ProteinModelPortal:Q2GD49
SMR:Q2GD49 STRING:Q2GD49 GeneID:3932056 KEGG:nse:NSE_0721
PATRIC:22681457 BioCyc:NSEN222891:GHFU-733-MONOMER Uniprot:Q2GD49
Length = 783
Score = 1188 (423.3 bits), Expect = 8.1e-140, Sum P(2) = 8.1e-140
Identities = 247/541 (45%), Positives = 338/541 (62%)
Query: 435 SAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYG 494
SAAE++MT+LHAGGKF+++SYK+SGGLHG+G+S VN LS +L+LTI R+ K+H+ EF G
Sbjct: 89 SAAEVIMTQLHAGGKFDQSSYKVSGGLHGVGVSVVNALSDWLKLTIYRDGKVHFAEFENG 148
Query: 495 VLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNI-EFHYEILKKRIRELSF 553
+T+ +SV+ GD K GT +HF F N E + L+ R RELSF
Sbjct: 149 -------ETVRSLSVTGE--CGD--KTGTLVHFLPSRSTFKNTTEVSFSTLENRFRELSF 197
Query: 554 LNNGVCITLIDERXXXXXXXXXXXXTSG---FVSYINKSKLVVHPTIFQAXXXXXXXXXX 610
LN G+ I+L+D R + G FV+Y+++SK +H T +
Sbjct: 198 LNPGLRISLLDMRKGSSTGKVVFFSSGGTEEFVAYLDRSKQPIHSTPIRVVGGVDSIAI- 256
Query: 611 XXXXDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKI 670
DVSMQWN+SY EN+LCFTNNI Q DGGTHL LRS +TR ++ YI + +KK K+
Sbjct: 257 ----DVSMQWNDSYYENVLCFTNNIKQKDGGTHLAALRSAMTRVMHNYIVKENLIKKDKV 312
Query: 671 EIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGES 730
+ GED+REGL+ +LS+K+PDPKF+SQTK KL+SSEV+ +E+I+ L +L+ENP +
Sbjct: 313 VVSGEDVREGLSAILSVKLPDPKFSSQTKEKLISSEVKPVIEKIVSDALASWLEENPSSA 372
Query: 731 KLICXXXXXXXXXXXXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSA 790
++I LTR+K ++ L KLADCQEK+PEL EL IVEGDSA
Sbjct: 373 RVIARKVVESALAREAAKKARDLTRRKGGLEITTLPGKLADCQEKSPELSELLIVEGDSA 432
Query: 791 GGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKL 850
GGS KQGRDR+ QAVLPLRGK+LN+EK RF K+I S + ++EFN++K+
Sbjct: 433 GGSAKQGRDRKTQAVLPLRGKILNVEKTRFHKVIGSAEIGNLIAALGTSIGEEEFNIDKI 492
Query: 851 RYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRD 910
RYH+IIIMTDAD+DG HIR LLLTFF+R ++E GY+YIAQ PLYK+ + YLRD
Sbjct: 493 RYHKIIIMTDADVDGLHIRTLLLTFFFRYARPIVERGYLYIAQTPLYKVMRKGADVYLRD 552
Query: 911 DIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSA 970
D E Y+L K +L NG++ +++ + +I+ + I + IL
Sbjct: 553 DAALEEYLLDRIVKGKELEGA-NGNVYTGQSLKRVVQQCLVLSKILEKFDYRIPLEILEV 611
Query: 971 I 971
+
Sbjct: 612 V 612
Score = 532 (192.3 bits), Expect = 4.1e-65, Sum P(2) = 4.1e-65
Identities = 117/256 (45%), Positives = 158/256 (61%)
Query: 345 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVT 404
+ Y+A SI++L+GLEAVRKRP MYIGDT DG+GLH V+E++DN++DESLAGYCT I V
Sbjct: 4 TDYTADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHQMVYEVVDNSVDESLAGYCTAIEVV 63
Query: 405 IYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGI 464
I GRG SAAE++MT+LHAGGKF+++SYK+SGGLHG+
Sbjct: 64 IDVDGSISVEDNGRGMPTDMHGEGV-----SAAEVIMTQLHAGGKFDQSSYKVSGGLHGV 118
Query: 465 GLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTK 524
G+S VN LS +L+LTI R+ K+H+ EF G +T+ +SV+ GD K GT
Sbjct: 119 GVSVVNALSDWLKLTIYRDGKVHFAEFENG-------ETVRSLSVTGE--CGD--KTGTL 167
Query: 525 IHFWVDEKIFSNI-EFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSG-- 581
+HF F N E + L+ R RELSFLN G+ I+L+D R + G
Sbjct: 168 VHFLPSRSTFKNTTEVSFSTLENRFRELSFLNPGLRISLLDMRKGSSTGKVVFFSSGGTE 227
Query: 582 -FVSYINKSKLVVHPT 596
FV+Y+++SK +H T
Sbjct: 228 EFVAYLDRSKQPIHST 243
Score = 201 (75.8 bits), Expect = 8.1e-140, Sum P(2) = 8.1e-140
Identities = 42/95 (44%), Positives = 62/95 (65%)
Query: 1070 KYTANNFYKIINYLRNE---AENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKD 1126
++ ++ I+ ++R+ A ++ QR+KGLGEMNP QLW TT++P R + KV I++
Sbjct: 689 RFNNGEYHSILAFIRDADSVARAGMVLQRFKGLGEMNPEQLWSTTLDPSNRTIFKVTIEE 748
Query: 1127 AISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 1161
A AD++ LMGD V RR FI NAL+A NID+
Sbjct: 749 AAVADQMCSMLMGDAVGPRRDFIVNNALNASNIDV 783
>TIGR_CMR|SPO_0155 [details] [associations]
symbol:SPO_0155 "DNA gyrase, B subunit" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:YP_165427.1 ProteinModelPortal:Q5LWU8
SMR:Q5LWU8 GeneID:3194940 KEGG:sil:SPO0155 PATRIC:23373557
Uniprot:Q5LWU8
Length = 805
Score = 1152 (410.6 bits), Expect = 2.7e-139, Sum P(2) = 2.7e-139
Identities = 238/533 (44%), Positives = 335/533 (62%)
Query: 435 SAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYG 494
SAAE++MT+LHAGGKF+ NSYK+SGGLHG+G+S VN LS +L+L I R+ K H F
Sbjct: 95 SAAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSVVNALSDWLELRIWRHGKEHVARFE-- 152
Query: 495 VLQNRIIKTINGISVSPIKIIGDT-NKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSF 553
G +V ++++G+ ++ GT++ F FSN+++ +E L+KR+REL+F
Sbjct: 153 ----------RGDTVEHLRVVGECGDRTGTEVRFLASTTTFSNLDYVFETLEKRLRELAF 202
Query: 554 LNNGVCITLIDERXXXXXXXXXXXX--TSGFVSYINKSKLVVHPTIFQAXXXXXXXXXXX 611
LN+GV I LIDER FV Y+++SK V P
Sbjct: 203 LNSGVRIILIDERPAERIETELFYEGGVREFVKYLDRSKSPVMPAPIY-----FKGERDD 257
Query: 612 XXXDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIE 671
+++M WN+SY+E +L FTNNI Q DGGTH+ G R +TR IN Y + + K+ KI
Sbjct: 258 IGVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRTINNYAQSSGIAKREKIN 317
Query: 672 IIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESK 731
G+D REGLTCVLS+K+PDPKF+SQTK+KLVSSEVR VE ++ + L ++ +ENP +K
Sbjct: 318 FTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENLVNEKLAEWFEENPNVAK 377
Query: 732 LICXXXXXXXXXXXXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAG 791
I LTR+K +D L+ KL DC EK+P E+++VEGDSAG
Sbjct: 378 QIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSEKDPSKTEVFLVEGDSAG 437
Query: 792 GSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLR 851
GS + GRDRR QAVLPLRGK+LN+E+ARF++++ S++ +DEFN+ KLR
Sbjct: 438 GSAQTGRDRRTQAVLPLRGKILNVERARFDRMLGSQEIGNLVMALGTGIGRDEFNISKLR 497
Query: 852 YHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDD 911
YH+I+IMTDAD+DGAHIR LLLTFFYR+MP+LIE GY+YIAQPPLYK+ G +E YL+D
Sbjct: 498 YHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQPPLYKVARGKSEVYLKDQ 557
Query: 912 IEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIID 964
+ Y++ + ++ + NG+ I + + +E +LK+++D
Sbjct: 558 AALDDYLIHQGVEGA-VLKLGNGEEI-------VGQDLTRVVEEARQLKRVLD 602
Score = 513 (185.6 bits), Expect = 8.4e-66, Sum P(2) = 8.4e-66
Identities = 111/254 (43%), Positives = 154/254 (60%)
Query: 345 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVT 404
+ Y A SI++L+GLEAVRKRP MYIGDT DG+GLHH V+E++DN IDE+LAG+ + V
Sbjct: 9 NEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADHVTVK 68
Query: 405 IYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGI 464
I+ GRG SAAE++MT+LHAGGKF+ NSYK+SGGLHG+
Sbjct: 69 IHADSSVSVADNGRGIPVDIHAEEGV----SAAEVIMTQLHAGGKFDSNSYKVSGGLHGV 124
Query: 465 GLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDT-NKQGT 523
G+S VN LS +L+L I R+ K H F G +V ++++G+ ++ GT
Sbjct: 125 GVSVVNALSDWLELRIWRHGKEHVARFE------------RGDTVEHLRVVGECGDRTGT 172
Query: 524 KIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXX--TSG 581
++ F FSN+++ +E L+KR+REL+FLN+GV I LIDER
Sbjct: 173 EVRFLASTTTFSNLDYVFETLEKRLRELAFLNSGVRIILIDERPAERIETELFYEGGVRE 232
Query: 582 FVSYINKSKLVVHP 595
FV Y+++SK V P
Sbjct: 233 FVKYLDRSKSPVMP 246
Score = 232 (86.7 bits), Expect = 2.7e-139, Sum P(2) = 2.7e-139
Identities = 44/82 (53%), Positives = 60/82 (73%)
Query: 1079 IINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLM 1138
++ + +E E + QRYKGLGEMNP QLWETT++P R LL+V++ D + AD IF LM
Sbjct: 723 LLKAILDEGEKGLTLQRYKGLGEMNPEQLWETTLDPDARTLLQVRVNDMVEADDIFTKLM 782
Query: 1139 GDNVELRRKFIELNALHAKNID 1160
GD+VE RR+FI+ NAL +N+D
Sbjct: 783 GDSVEPRREFIQQNALSVENLD 804
Score = 40 (19.1 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 304 EKASE--ELEINYNGKDKNFIKFL 325
E+ +E E E+ Y G + F+K+L
Sbjct: 214 ERPAERIETELFYEGGVREFVKYL 237
>UNIPROTKB|Q8A277 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:226186
"Bacteroides thetaiotaomicron VPI-5482" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 EMBL:AE015928 GenomeReviews:AE015928_GR
GO:GO:0009295 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK05644 HOGENOM:HOG000075154 HSSP:P06982
RefSeq:NP_812341.1 ProteinModelPortal:Q8A277 GeneID:1074051
KEGG:bth:BT_3429 PATRIC:21061865
BioCyc:BTHE226186:GJXV-3494-MONOMER Uniprot:Q8A277
Length = 653
Score = 1167 (415.9 bits), Expect = 6.5e-138, Sum P(2) = 6.5e-138
Identities = 248/585 (42%), Positives = 352/585 (60%)
Query: 346 SYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTI 405
SYSA SIQ+LEGLEAVRKRP MYIGD S GLHH V+EI+DN+IDE+LAGYC I VTI
Sbjct: 12 SYSADSIQVLEGLEAVRKRPAMYIGDISI-KGLHHLVYEIVDNSIDEALAGYCDHIEVTI 70
Query: 406 YXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIG 465
GRG +SA E+ MT LHAGGKF+K SYK+SGGLHG+G
Sbjct: 71 NEDNSITVQDNGRGIPVDYHEKEK----KSALEVAMTVLHAGGKFDKGSYKVSGGLHGVG 126
Query: 466 LSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKI 525
+SCVN LS + + RN KI+ E+ G + + ++ + VS I GT+
Sbjct: 127 MSCVNALSTHMTTQVFRNGKIYQQEYEIG----KPLYSVKEVGVSDIT--------GTRQ 174
Query: 526 HFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXT----SG 581
FW D+ IF+ + Y+IL R+REL++LN G+ I+L D R G
Sbjct: 175 QFWPDDTIFTETVYDYKILASRLRELAYLNAGLRISLTDRRVVNEEDGSFKSEVFYSEEG 234
Query: 582 ---FVSYINKSKL-VVHPTIFQAXXXXXXXXXXXXXXDVSMQWNNSYNENILCFTNNILQ 637
FV +I S+ +++ I+ ++++ +N ++EN+ + NNI
Sbjct: 235 LREFVRFIESSREHLINDVIY------LNSEKQGIPIEIAIMYNTGFSENVHSYVNNINT 288
Query: 638 VDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQ 697
++GGTHL G R +TR + KY E+++ L+K K+EI G+D REGLT V+S+K+ +P+F Q
Sbjct: 289 IEGGTHLAGFRRALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQ 348
Query: 698 TKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXXXXXXLTRKK 757
TK KL ++EV V++ + + L +L+E+P E+K I + ++K
Sbjct: 349 TKTKLGNNEVMGAVDQAVGEVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRK 408
Query: 758 NLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEK 817
+ + L KLADC +K+P CEL++VEGDSAGG+ KQGR+R FQA+LPLRGK+LN+EK
Sbjct: 409 SPMSGGGLPGKLADCSDKDPSKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEK 468
Query: 818 ARFEKIILSEQXXXXXXXXXXX--XEQD--EFNLEKLRYHRIIIMTDADIDGAHIRALLL 873
A + K + S++ E D E N+EKLRYH+IIIMTDAD+DG+HI L++
Sbjct: 469 AMYHKALESDEIRNIYTALGVTIGTEDDSKEANIEKLRYHKIIIMTDADVDGSHIDTLIM 528
Query: 874 TFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYM 918
TFF+R MP++I+ GY+YIA PPLY K G E Y D + ++++
Sbjct: 529 TFFFRYMPQIIQNGYLYIATPPLYLCKKGKVEEYCWTDAQRQKFI 573
Score = 204 (76.9 bits), Expect = 6.5e-138, Sum P(2) = 6.5e-138
Identities = 50/96 (52%), Positives = 61/96 (63%)
Query: 1067 KIKKY--TANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKI 1124
K+++Y T K I+ EN V QRYKGLGEMN QLWETTM+P R L +V I
Sbjct: 558 KVEEYCWTDAQRQKFIDTYGGGLENAVHTQRYKGLGEMNAQQLWETTMDPDNRMLKQVNI 617
Query: 1125 KDAISADKIFMTLMGDNVELRRKFIELNALHAKNID 1160
+A AD IF LMG++V RR+FIE NA +A NID
Sbjct: 618 DNAAEADYIFSMLMGEDVGPRREFIEENATYA-NID 652
>UNIPROTKB|P77993 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:243274
"Thermotoga maritima MSB8" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 EMBL:AE000512 GenomeReviews:AE000512_GR
GO:GO:0009295 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
PROSITE:PS50880 OMA:IFETTEF ProtClustDB:PRK05644 EMBL:U49692
PIR:JC4960 RefSeq:NP_228642.1 ProteinModelPortal:P77993 SMR:P77993
DNASU:898504 GeneID:898504 KEGG:tma:TM0833 PATRIC:23936592
Uniprot:P77993
Length = 636
Score = 1141 (406.7 bits), Expect = 6.6e-136, Sum P(2) = 6.6e-136
Identities = 250/584 (42%), Positives = 345/584 (59%)
Query: 347 YSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIY 406
YSA SI++L+GLE VR RP MYIG T GLHH V+E++DN++DE+LAGYC I VT++
Sbjct: 4 YSAESIKVLKGLEPVRMRPGMYIGSTGK-RGLHHLVYEVVDNSVDEALAGYCDWIRVTLH 62
Query: 407 XXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGL 466
GRG RSA E+V T LHAGGKF+K+SYKISGGLHG+G+
Sbjct: 63 EDGSVEVEDNGRGIPVDIHPEEG----RSALEVVFTVLHAGGKFSKDSYKISGGLHGVGV 118
Query: 467 SCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIH 526
S VN LS +L++ ++R+ KI Y + RY G V+P+++IG+T+K GT +
Sbjct: 119 SVVNALSEWLEVRVHRDGKI-YRQ-RYE----------RGKPVTPVEVIGETDKHGTIVR 166
Query: 527 FWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSGFVSYI 586
F D IFS EF +IL+ R+RE++FL G+ I D +V Y+
Sbjct: 167 FKPDPLIFSETEFDPDILEHRLREIAFLVPGLKIEFEDRINGEKKTFKFDGGIVEYVKYL 226
Query: 587 NKSKLVVHPTIF--QAXXXXXXXXXXXXXXDVSMQWNNSYNENILCFTNNILQVDGGTHL 644
N+ K +H I + +++ Q+ +SY+E+I+ F N I VDGGTH+
Sbjct: 227 NRGKKALHDVIHIKRTEKVKTKNGEDEVIVEIAFQYTDSYSEDIVSFANTIKTVDGGTHV 286
Query: 645 TGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVS 704
T +S +TR +N+Y +++ FLKK GED+REGLT V+S+ + +P+F QTK+KL +
Sbjct: 287 TAFKSTLTRLMNEYGKKHNFLKKDD-SFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGN 345
Query: 705 SEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXXXXXXLTRKKNLIDDIE 764
EV++ V + + + L NP K I + R+KN++ +
Sbjct: 346 EEVKEAVTKAMREELKKIFDANPELVKTILSKIMSTKQAREAAKRAREMVRRKNVLQNTT 405
Query: 765 LSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKII 824
L KLADC + E EL+IVEGDSAGGS KQ RDR FQAVLP+RGK+LN+EK+ ++++
Sbjct: 406 LPGKLADCSSTHREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLL 465
Query: 825 LSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLI 884
+EQ D+F+ KLRY RIIIMTDADIDGAHIR LLLT FYR M LI
Sbjct: 466 KNEQISDIIVAVGTGIG-DDFDESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLI 524
Query: 885 EYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKL 928
E G +YIA PPLY+IK G E Y+ D E Y K+ K +++
Sbjct: 525 EQGRVYIALPPLYRIKAGREEFYVYSDQELAEYKEKLQGKRIEI 568
Score = 211 (79.3 bits), Expect = 6.6e-136, Sum P(2) = 6.6e-136
Identities = 41/68 (60%), Positives = 52/68 (76%)
Query: 1094 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNA 1153
QRYKGLGEMNP QLWETTMNP R +++V I+DA AD++F LMG++ RR+FIE +A
Sbjct: 569 QRYKGLGEMNPEQLWETTMNPETRKIIRVTIEDAEEADRLFEILMGNDPSSRREFIERHA 628
Query: 1154 LHAKNIDI 1161
L K +DI
Sbjct: 629 LKVKELDI 636
Score = 51 (23.0 bits), Expect = 5.7e-13, Sum P(3) = 5.7e-13
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 489 MEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIE 538
ME +Y +++K + + + P IG T K+G +H V E + ++++
Sbjct: 1 ME-KYSAESIKVLKGLEPVRMRPGMYIGSTGKRG--LHHLVYEVVDNSVD 47
Score = 39 (18.8 bits), Expect = 5.7e-13, Sum P(3) = 5.7e-13
Identities = 18/87 (20%), Positives = 40/87 (45%)
Query: 922 AFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISI----LSAIMSDVIL 977
AFK+ L + N + K++ F K D + ++ L +I + + +
Sbjct: 288 AFKST-LTRLMN-EYGKKHNFLKKDDSFQGE-DVREGLTAVISVYVKNPEFEGQTKSKLG 344
Query: 978 NLDTRENAEQFAKKIIKKLNDSNIEII 1004
N + +E + ++ +KK+ D+N E++
Sbjct: 345 NEEVKEAVTKAMREELKKIFDANPELV 371
>UNIPROTKB|O08399 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:243276
"Treponema pallidum subsp. pallidum str. Nichols" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01898 InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 EMBL:AE000520
GenomeReviews:AE000520_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF ProtClustDB:PRK05644
EMBL:U78094 PIR:H71254 RefSeq:NP_219443.1 ProteinModelPortal:O08399
IntAct:O08399 GeneID:2610807 KEGG:tpa:TP1006 PATRIC:20532137
Uniprot:O08399
Length = 637
Score = 1132 (403.5 bits), Expect = 8.4e-136, Sum P(2) = 8.4e-136
Identities = 244/588 (41%), Positives = 351/588 (59%)
Query: 347 YSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIY 406
YSASSI +LEGLEAVRKRP MYIG T GLHH V+E++DN IDE++AGYC +I V +
Sbjct: 5 YSASSITVLEGLEAVRKRPGMYIGSTGPN-GLHHLVYEVVDNCIDEAMAGYCDRITVVLE 63
Query: 407 XXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGL 466
GRG SA E+V+T+LHAGGKF+K SYK+SGGLHG+G+
Sbjct: 64 QGNVVRVEDNGRGIPVDVHPHEGV----SALEVVLTKLHAGGKFDKKSYKVSGGLHGVGV 119
Query: 467 SCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIH 526
S VN LS ++++T+ R+ +Y +F G+ ++P++ G + K+GT I
Sbjct: 120 SVVNALSLWVEVTVYRDGAEYYQKFNVGM------------PLAPVEKRGVSEKRGTIIR 167
Query: 527 FWVDEKIFSN-IEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTS--GFV 583
+ D IF + + +++L R+REL+FLN+ V I L DER FV
Sbjct: 168 WQADPSIFKETVAYDFDVLLTRLRELAFLNSTVVIQLRDERLATAKQVEFAFEGGIRHFV 227
Query: 584 SYINKSKLVV--HPTIFQAXXXXXXXXXXXXXXDVSMQWNNSYNENILCFTNNILQVDGG 641
SY+N+ K VV P + +V++Q+++ Y EN+ F N+I +GG
Sbjct: 228 SYLNRGKSVVPERPLYIEGSKSDVLV-------EVALQYHDGYTENVQSFVNDINTREGG 280
Query: 642 THLTGLRSGITRAINKYIEENEFLKKSKIE----IIGEDIREGLTCVLSIKIPDPKFNSQ 697
THL G +S +TR N +++++ L K KIE ++GED+R GLT VLS+KIP+P+F Q
Sbjct: 281 THLEGFKSALTRVANDFLKKSPKLAK-KIEREEKLVGEDVRAGLTVVLSVKIPEPQFEGQ 339
Query: 698 TKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXXXXXXLTRKK 757
TK KL +SEVR V+ ++ + L + ++NPG I R+K
Sbjct: 340 TKTKLGNSEVRGIVDSLVGERLTLYFEQNPGVLTKILEKSIAEAQARLAARRAKEAARRK 399
Query: 758 NLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEK 817
+ +D L KLADC K+P CE+YIVEGDSAGGS K+GRD + QA+LPL GK+LN+EK
Sbjct: 400 SGMDSFGLPGKLADCSLKDPAKCEVYIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEK 459
Query: 818 ARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFY 877
R +K++ +E+ +D F+L ++RYH++IIM DAD+DG+HIR LLLTFF+
Sbjct: 460 TRLDKVLHNEKLQPIIATLGTGVGKD-FDLTRIRYHKVIIMADADVDGSHIRTLLLTFFF 518
Query: 878 RKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKN 925
R +P++IE GY+Y+A PPLY+I + E Y+ D E + + I K+
Sbjct: 519 RYLPQIIEAGYVYLAMPPLYRIAWSKKELYVYSDTERDEALESIGKKS 566
Score = 219 (82.2 bits), Expect = 8.4e-136, Sum P(2) = 8.4e-136
Identities = 42/71 (59%), Positives = 58/71 (81%)
Query: 1091 VIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIE 1150
V QRYKGLGEM+ QLWETTMNP+ R +++V + DA+ AD++F TLMG++VE RRKFIE
Sbjct: 568 VAVQRYKGLGEMDGTQLWETTMNPVRRKMMQVVLSDAVEADRVFSTLMGEDVEPRRKFIE 627
Query: 1151 LNALHAKNIDI 1161
NA++A+ +D+
Sbjct: 628 ENAIYAR-LDV 637
>TIGR_CMR|CBU_0004 [details] [associations]
symbol:CBU_0004 "DNA gyrase, B subunit" species:227377
"Coxiella burnetii RSA 493" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898 InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0006261 EMBL:AE016828 GenomeReviews:AE016828_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:NP_819060.2 ProteinModelPortal:Q83FD5
PRIDE:Q83FD5 GeneID:1207924 KEGG:cbu:CBU_0004 PATRIC:17928685
BioCyc:CBUR227377:GJ7S-5-MONOMER Uniprot:Q83FD5
Length = 810
Score = 1317 (468.7 bits), Expect = 2.0e-134, P = 2.0e-134
Identities = 285/686 (41%), Positives = 394/686 (57%)
Query: 488 YMEFRY-GVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKK 546
YM R G + + K G+ +P+ + G ++K GT+I F IFSN EFHY+IL K
Sbjct: 137 YMTIRQNGNVYTQTYKM--GVPQAPLAVTGKSDKTGTEIRFKPSNAIFSNTEFHYDILAK 194
Query: 547 RIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSGFVSYINKSKLVVHPTIFQAXXXXXX 606
R+REL+FLN GV I L DER FV ++NK K +H +F
Sbjct: 195 RLRELAFLNLGVRIELTDERSGRGDIFEYEGGIKAFVEHLNKKKTPIHSDVFH-----FS 249
Query: 607 XXXXXXXXDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLK 666
+V+MQWN+ + E I CFTNNI Q DGGTHL G R+ +TR +N YIE K
Sbjct: 250 TEKNDIVVEVAMQWNDGFQETIFCFTNNIPQNDGGTHLAGFRAALTRTLNNYIEGEALAK 309
Query: 667 KSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQEN 726
KSK+ I G+D REGLT VLS+K+PDPKF+SQTK+KLVSSEV+ VE + K L D+L EN
Sbjct: 310 KSKVTISGDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEVKPVVESTVAKQLHDYLLEN 369
Query: 727 PGESKLICXXXXXXXXXXXXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVE 786
P ++++I +TR+KN++D L KLADCQEK+P LCEL++VE
Sbjct: 370 PKQARIIAMKVIDAARAREAARKARDMTRRKNVLDLGGLPGKLADCQEKDPALCELFLVE 429
Query: 787 GDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFN 846
GDSAGGS KQ RDRR+QA+LPL+GK+LN+EKARF+K++ S + ++E+N
Sbjct: 430 GDSAGGSAKQARDRRYQAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGKEEYN 489
Query: 847 LEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNEC 906
+KLRYHRII+MTDAD+DG+HIR LLLTFFYR+MP+LIE G+IYIAQPPLYK+K E
Sbjct: 490 PDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPPLYKVKKSKQEQ 549
Query: 907 YLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDIS 966
Y++DD+ + +L++A + I+ + L Y + ++RL + +
Sbjct: 550 YVKDDLALDALLLQLALDGAQFHPTPQAPAIQGSALENLAAHYRTAMRSINRLGKRYPLY 609
Query: 967 ILSAIMSD---VILNLDTRENAEQFAKKIIKKLNDSNIEIIVEFDQXXXXXXXXXXXXXX 1023
IL +++ + +L E + +++ ++LN+ E + + Q
Sbjct: 610 ILKRLLNFPPLTVADLSEEEKVIAWTQRLEEQLNEPKTENSLRY-QTAIKKDAERELYLP 668
Query: 1024 XXXXXXXDI--------NFINNKDYKKLVSIISTFXXXXXXXXXXXXXXXEKIKKYTANN 1075
I F DY+ LV + + K+ T +
Sbjct: 669 MVTIINHGIAQQHLFHQEFFGCADYRHLVDLYNKISGLIEPGAYIVRND----KRRTVTH 724
Query: 1076 FYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFM 1135
F + + + E + + QRYKGLGEMNP QLWETTM+ R LL V I+DA+ AD+IF
Sbjct: 725 FGEALEWFIEEGKKGLNIQRYKGLGEMNPDQLWETTMDRESRRLLSVSIEDAVMADEIFT 784
Query: 1136 TLMGDNVELRRKFIELNALHAKNIDI 1161
TLMGD VE RR FIE NAL +N+D+
Sbjct: 785 TLMGDQVEPRRLFIEQNALAVENLDV 810
Score = 577 (208.2 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 119/252 (47%), Positives = 159/252 (63%)
Query: 347 YSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIY 406
Y +S+I++L+GL+AVRKRP MYIGDT DG+GLHH VFE++DN+IDE+LAG+C+ I VTI+
Sbjct: 11 YDSSTIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGFCSHIWVTIH 70
Query: 407 XXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGL 466
GRG RSAAE++MT LHAGGKF+KN+YK+SGGLHG+G+
Sbjct: 71 ADGSVSVRDNGRGIPTDIHPEEG----RSAAEVIMTVLHAGGKFDKNAYKVSGGLHGVGI 126
Query: 467 SCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIH 526
S VN LS L +TI +N ++ ++ GV Q +P+ + G ++K GT+I
Sbjct: 127 SVVNALSEELYMTIRQNGNVYTQTYKMGVPQ------------APLAVTGKSDKTGTEIR 174
Query: 527 FWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSGFVSYI 586
F IFSN EFHY+IL KR+REL+FLN GV I L DER FV ++
Sbjct: 175 FKPSNAIFSNTEFHYDILAKRLRELAFLNLGVRIELTDERSGRGDIFEYEGGIKAFVEHL 234
Query: 587 NKSKLVVHPTIF 598
NK K +H +F
Sbjct: 235 NKKKTPIHSDVF 246
>TAIR|locus:2146698 [details] [associations]
symbol:GYRB2 "DNA GYRASE B2" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006259 "DNA metabolic process" evidence=ISS] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IEA;ISS;IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IBA] [GO:0003916 "DNA topoisomerase
activity" evidence=IGI] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005694 GO:GO:0007059 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 EMBL:AL391716
GO:GO:0009330 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
EMBL:AY039521 EMBL:AY142041 IPI:IPI00527008 IPI:IPI00537479
RefSeq:NP_568133.1 RefSeq:NP_850762.1 UniGene:At.10083
ProteinModelPortal:Q94BZ7 SMR:Q94BZ7 STRING:Q94BZ7 PaxDb:Q94BZ7
PRIDE:Q94BZ7 EnsemblPlants:AT5G04130.1 GeneID:830291
KEGG:ath:AT5G04130 GeneFarm:4066 TAIR:At5g04130 eggNOG:COG0187
HOGENOM:HOG000075155 InParanoid:Q94BZ7 KO:K02470 OMA:IGKNEYN
PhylomeDB:Q94BZ7 ProtClustDB:CLSN2689450 Genevestigator:Q94BZ7
GermOnline:AT5G04130 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
PROSITE:PS50880 Uniprot:Q94BZ7
Length = 732
Score = 1077 (384.2 bits), Expect = 4.0e-128, Sum P(3) = 4.0e-128
Identities = 232/582 (39%), Positives = 340/582 (58%)
Query: 340 QDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCT 399
+ T YS+ IQ+LEGL+ VRKRP MYIG T GLHH V+EILDNAIDE+ AGY +
Sbjct: 84 ETTTSKGYSSEQIQVLEGLDPVRKRPGMYIGSTGS-RGLHHLVYEILDNAIDEAQAGYAS 142
Query: 400 KINVTIYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNS--YKI 457
K++V ++ GRG +S+ E V+T LHAGGKF S Y +
Sbjct: 143 KVDVVLHADGSVSVVDNGRGIPTDLHPATK----KSSLETVLTVLHAGGKFGGTSSGYSV 198
Query: 458 SGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGD 517
SGGLHG+GLS VN LS L++++ R+ H + G + I T+ V P++ G
Sbjct: 199 SGGLHGVGLSVVNALSEALEVSVWRDGMEHKQNYSRG----KPITTLT-CRVLPLESKGT 253
Query: 518 TNKQGTKIHFWVDEKIFSN-IEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXX 576
+GT I FW D+++F+ IEF + + RIREL+FLN V I+L E
Sbjct: 254 ---KGTSIRFWPDKEVFTTAIEFDHNTIAGRIRELAFLNPKVTISLKKEDDDPEKTQYSE 310
Query: 577 XXTSG----FVSYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQW-NNSYNENILCF 631
+G +VS++N K +H + DV++QW +++Y++ +L +
Sbjct: 311 YSFAGGLTEYVSWLNTDKNPIHDVL------GFRREINGATVDVALQWCSDAYSDTMLGY 364
Query: 632 TNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPD 691
N+I +DGGTH+ G+++ +TR +N ++++ +K+ I + GE +REGLTC++S+K+P+
Sbjct: 365 ANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSGEHVREGLTCIVSVKVPN 424
Query: 692 PKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXXXXX 751
P+F QTK +L + EVRK V++ + + L +FL+ +P + I
Sbjct: 425 PEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPDILESIISKSLNAYKAALAAKRAR 484
Query: 752 XLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGK 811
L R K+++ L KLADC +PE+ E++IVEGDSAGGS KQGRDRRFQA+LPLRGK
Sbjct: 485 ELVRSKSVLKSSSLPGKLADCSSTDPEVSEIFIVEGDSAGGSAKQGRDRRFQAILPLRGK 544
Query: 812 VLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADIDGAHIRAL 871
+LNIE+ + +E+ + ++F E LRYH+III+TDAD+DGAHIR L
Sbjct: 545 ILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKENLRYHKIIILTDADVDGAHIRTL 604
Query: 872 LLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIE 913
LLTFF+R L + G IY+ PPL+K++ G N Y DD +
Sbjct: 605 LLTFFFRYQRALFDAGCIYVGVPPLFKVERGKNAQYCYDDAD 646
Score = 157 (60.3 bits), Expect = 4.0e-128, Sum P(3) = 4.0e-128
Identities = 35/83 (42%), Positives = 53/83 (63%)
Query: 1081 NYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGD 1140
N+ N + N+ QR+KGLGEM P QLWETTMNP R L ++ + D A+ F +LMG
Sbjct: 653 NFPANASYNI---QRFKGLGEMMPEQLWETTMNPETRILKQLVVDDIAEANMTFSSLMGA 709
Query: 1141 NVELRRKFIELNA--LHAKNIDI 1161
V++R++ I+ A ++ + +DI
Sbjct: 710 RVDVRKELIKNAATRINLQRLDI 732
Score = 59 (25.8 bits), Expect = 4.0e-128, Sum P(3) = 4.0e-128
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 25 KKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINII 71
K + +LS L+ +N+ FLST+ Q TT T+ GY + I ++
Sbjct: 55 KFQLTSVLSQRLIQRNAISSRFLSTEAS-QETT-TSKGYSSEQIQVL 99
Score = 37 (18.1 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 302 NREKASEELEINYN---GKDKNFIKFLIKIMLLKNKNSYDIQDTQESSYS 348
++E + +E ++N G+ + K+ + K D + TQ S YS
Sbjct: 263 DKEVFTTAIEFDHNTIAGRIRELAFLNPKVTISLKKEDDDPEKTQYSEYS 312
>UNIPROTKB|P05652 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:224308 "Bacillus
subtilis subsp. subtilis str. 168" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 EMBL:AL009126 GenomeReviews:AL009126_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
EMBL:D26185 EMBL:X02369 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
PROSITE:PS50880 ProtClustDB:PRK05644 PIR:E22930 RefSeq:NP_387887.1
ProteinModelPortal:P05652 SMR:P05652 PRIDE:P05652
EnsemblBacteria:EBBACT00000000768 GeneID:939456 KEGG:bsu:BSU00060
PATRIC:18971459 GenoList:BSU00060 HOGENOM:HOG000075156 OMA:MDRILAN
BioCyc:BSUB:BSU00060-MONOMER BindingDB:P05652 ChEMBL:CHEMBL4324
Uniprot:P05652
Length = 638
Score = 1050 (374.7 bits), Expect = 1.5e-127, Sum P(2) = 1.5e-127
Identities = 220/492 (44%), Positives = 300/492 (60%)
Query: 434 RSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRY 493
R A E++MT LHAGGKF+ + YK+SGGLHG+G S VN LS L +T++R+ KIH ++
Sbjct: 90 RPAVEVIMTVLHAGGKFDGSGYKVSGGLHGVGASVVNALSTELDVTVHRDGKIHRQTYK- 148
Query: 494 GVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNI-EFHYEILKKRIRELS 552
G+ V+ ++IIG+T+ GT HF D +IFS E+ Y++L R+REL+
Sbjct: 149 -----------RGVPVTDLEIIGETDHTGTTTHFVPDPEIFSETTEYDYDLLANRVRELA 197
Query: 553 FLNNGVCITLIDERXXXXXXXXXXXX--TSGFVSYINKSKLVVH--PTIFQAXXXXXXXX 608
FL GV IT+ D+R +V Y+N+SK VVH P +
Sbjct: 198 FLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITV- 256
Query: 609 XXXXXXDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKS 668
+V++Q+N+SY NI FTNNI +GGTH G ++G+TR IN Y + +K++
Sbjct: 257 ------EVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGLIKEN 310
Query: 669 KIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPG 728
+ G+D+REGLT ++SIK PDP+F QTK KL +SE R + + + F+ ENP
Sbjct: 311 DPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSTAMETFMLENPD 370
Query: 729 ESKLICXXXXXXXXXXXXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGD 788
+K I LTR+K+ ++ L KLADC K+P + ELYIVEGD
Sbjct: 371 AAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGD 430
Query: 789 SAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLE 848
SAGGS KQGRDR FQA+LPLRGK+LN+EKAR +KI+ + + +D FNLE
Sbjct: 431 SAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGED-FNLE 489
Query: 849 KLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYL 908
K RYH+++IMTDAD+DGAHIR LLLTFFYR M ++IE GY+YIAQPPLYK++ G Y
Sbjct: 490 KARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEYA 549
Query: 909 RDDIEEERYMLK 920
+D E E +LK
Sbjct: 550 YNDKELEE-LLK 560
Score = 515 (186.3 bits), Expect = 4.0e-69, Sum P(2) = 4.0e-69
Identities = 114/257 (44%), Positives = 154/257 (59%)
Query: 341 DTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTK 400
+ Q++SY + IQ+LEGLEAVRKRP MYIG T+ GLHH V+EI+DN+IDE+LAGYCT
Sbjct: 2 EQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNS-KGLHHLVWEIVDNSIDEALAGYCTD 60
Query: 401 INVTIYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGG 460
IN+ I GRG R A E++MT LHAGGKF+ + YK+SGG
Sbjct: 61 INIQIEKDNSITVVDNGRGIPVGIHEKMG----RPAVEVIMTVLHAGGKFDGSGYKVSGG 116
Query: 461 LHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNK 520
LHG+G S VN LS L +T++R+ KIH ++ G+ V+ ++IIG+T+
Sbjct: 117 LHGVGASVVNALSTELDVTVHRDGKIHRQTYK------------RGVPVTDLEIIGETDH 164
Query: 521 QGTKIHFWVDEKIFSNI-EFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXX- 578
GT HF D +IFS E+ Y++L R+REL+FL GV IT+ D+R
Sbjct: 165 TGTTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEG 224
Query: 579 -TSGFVSYINKSKLVVH 594
+V Y+N+SK VVH
Sbjct: 225 GIKSYVEYLNRSKEVVH 241
Score = 223 (83.6 bits), Expect = 1.5e-127, Sum P(2) = 1.5e-127
Identities = 44/68 (64%), Positives = 52/68 (76%)
Query: 1094 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNA 1153
QRYKGLGEMN QLWETTM+P R LL+V ++DA+ AD+ F LMGD VE RR FIE NA
Sbjct: 571 QRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMDADETFEMLMGDKVEPRRNFIEANA 630
Query: 1154 LHAKNIDI 1161
+ KN+DI
Sbjct: 631 RYVKNLDI 638
Score = 42 (19.8 bits), Expect = 7.8e-14, Sum P(2) = 7.8e-14
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 294 LKITVSSSNREKASEELEINYNGKDKNFIKFL 325
+ IT+ RE + E +Y G K+++++L
Sbjct: 203 VNITIEDK-REGQERKNEYHYEGGIKSYVEYL 233
Score = 37 (18.1 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 11 AILHPLQMVISIVEKKNILPILSN 34
AIL PL+ I VEK + ILSN
Sbjct: 446 AIL-PLRGKILNVEKARLDKILSN 468
>UNIPROTKB|P0C5C5 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:1773
"Mycobacterium tuberculosis" [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
[GO:0046982 "protein heterodimerization activity" evidence=IPI]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005886 GO:GO:0005524 GO:GO:0005737
GO:GO:0040007 GO:GO:0005618 GO:GO:0005694 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0000287
EMBL:BX842572 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 EMBL:L27512 eggNOG:COG0187 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF
ProtClustDB:PRK05644 PIR:S44198 RefSeq:NP_214519.1
RefSeq:NP_334414.1 RefSeq:YP_006513317.1 PDB:2ZJT PDB:3IG0 PDB:3M4I
PDBsum:2ZJT PDBsum:3IG0 PDBsum:3M4I ProteinModelPortal:P0C5C5
SMR:P0C5C5 PRIDE:P0C5C5 EnsemblBacteria:EBMYCT00000001058
EnsemblBacteria:EBMYCT00000070955 GeneID:13315978 GeneID:887081
GeneID:922435 KEGG:mtc:MT0005 KEGG:mtu:Rv0005 KEGG:mtv:RVBD_0005
PATRIC:18121734 TubercuList:Rv0005 HOGENOM:HOG000075154
BindingDB:P0C5C5 ChEMBL:CHEMBL3489 EvolutionaryTrace:P0C5C5
Uniprot:P0C5C5
Length = 675
Score = 686 (246.5 bits), Expect = 6.5e-127, Sum P(3) = 6.5e-127
Identities = 136/353 (38%), Positives = 207/353 (58%)
Query: 582 FVSYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNNSYNENILCFTNNILQVDGG 641
FV +IN++K +H +I +++MQWN Y+E++ F N I +GG
Sbjct: 260 FVKHINRTKNAIHSSIVD-----FSGKGTGHEVEIAMQWNAGYSESVHTFANTINTHEGG 314
Query: 642 THLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNK 701
TH G RS +T +NKY ++ + LK + G+DIREGL V+S+K+ +P+F QTK K
Sbjct: 315 THEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISVKVSEPQFEGQTKTK 374
Query: 702 LVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXXXXXXLTRKKNLID 761
L ++EV+ V+++ + L + + NP ++K++ L R+K+ D
Sbjct: 375 LGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAARKARELVRRKSATD 434
Query: 762 DIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFE 821
L KLADC+ +P ELY+VEGDSAGGS K GRD FQA+LPLRGK++N+EKAR +
Sbjct: 435 IGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARID 494
Query: 822 KIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMP 881
+++ + + DEF++ KLRYH+I++M DAD+DG HI LLLT +R M
Sbjct: 495 RVLKNTEVQAIITALGTGIH-DEFDIGKLRYHKIVLMADADVDGQHISTLLLTLLFRFMR 553
Query: 882 KLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENG 934
LIE G++++AQPPLYK+K+ ++ E +L+ K K I+ E+G
Sbjct: 554 PLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKKINKEDG 606
Score = 421 (153.3 bits), Expect = 6.5e-127, Sum P(3) = 6.5e-127
Identities = 89/223 (39%), Positives = 130/223 (58%)
Query: 344 ESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINV 403
+ Y A+SI ILEGLEAVRKRP MYIG T + GLHH ++E++DNA+DE++AGY T +NV
Sbjct: 9 QDEYGAASITILEGLEAVRKRPGMYIGSTGE-RGLHHLIWEVVDNAVDEAMAGYATTVNV 67
Query: 404 TIYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHG 463
+ GRG ++VMT+LHAGGKF+ ++Y ISGGLHG
Sbjct: 68 VLLEDGGVEVADDGRGIPVATHASGI-----PTVDVVMTQLHAGGKFDSDAYAISGGLHG 122
Query: 464 IGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGT 523
+G+S VN LS L++ I R+ G +++ + + +K T K G+
Sbjct: 123 VGVSVVNALSTRLEVEIKRD----------GYEWSQVYEKSEPLG---LKQGAPTKKTGS 169
Query: 524 KIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDER 566
+ FW D +F E+ +E + +R++E++FLN G+ I L DER
Sbjct: 170 TVRFWADPAVFETTEYDFETVARRLQEMAFLNKGLTINLTDER 212
Score = 188 (71.2 bits), Expect = 6.5e-127, Sum P(3) = 6.5e-127
Identities = 35/68 (51%), Positives = 50/68 (73%)
Query: 1094 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNA 1153
QRYKGLGEM+ +LWETTM+P +R L +V + DA +AD++F LMG++V+ RR FI NA
Sbjct: 608 QRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVDARRSFITRNA 667
Query: 1154 LHAKNIDI 1161
+ +D+
Sbjct: 668 KDVRFLDV 675
Score = 38 (18.4 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 1075 NFYKIINYLRNEAENMVIKQRYKGLG-EMNPGQLW 1108
+F K IN +N + ++ KG G E+ W
Sbjct: 259 DFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQW 293
>UNIPROTKB|Q5NBJ3 [details] [associations]
symbol:GYRB "DNA gyrase subunit B,
chloroplastic/mitochondrial" species:39947 "Oryza sativa Japonica
Group" [GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing)
activity" evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524 GO:GO:0009507
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
ProtClustDB:CLSN2689450 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
PROSITE:PS50880 OMA:IFETTEF EMBL:AP001073 EMBL:AP000969
EMBL:AK102391 RefSeq:NP_001042691.1 UniGene:Os.37563
ProteinModelPortal:Q5NBJ3 STRING:Q5NBJ3 PRIDE:Q5NBJ3 GeneID:4326261
KEGG:dosa:Os01t0268300-01 KEGG:osa:4326261 Gramene:Q5NBJ3
Uniprot:Q5NBJ3
Length = 729
Score = 1082 (385.9 bits), Expect = 1.5e-125, Sum P(2) = 1.5e-125
Identities = 228/575 (39%), Positives = 337/575 (58%)
Query: 347 YSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIY 406
Y+A+++Q+LE L+ VR RP MYIG T GLHH V+EILDNA+DE+ AGY TK++V ++
Sbjct: 89 YTAANVQVLEALDGVRTRPGMYIGSTGS-RGLHHLVYEILDNAVDEAQAGYATKVDVILH 147
Query: 407 XXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKF--NKNSYKISGGLHGI 464
GRG +S E V+T +HAGGKF +K+ Y +SGGLHG+
Sbjct: 148 GDNSVSVTDNGRGIPTDIHPQTK----KSCVETVLTLMHAGGKFGGSKSGYTVSGGLHGV 203
Query: 465 GLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTK 524
GLS VN LS L++T+ R+ K E+R + + I + ++S +++QGT+
Sbjct: 204 GLSVVNALSEALEVTVWRDGK----EYRQNYSRGKAITMLTSRTLSD----ESSSRQGTR 255
Query: 525 IHFWVDEKIFSN-IEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSGFV 583
I FW D+ IF+ ++F + + RIREL+FLN + I L E G V
Sbjct: 256 IRFWPDKHIFTTTMDFDFNTIAGRIRELAFLNPELTIALTKEEDDLQVQHNEYCYAGGLV 315
Query: 584 SYI---NKSKLVVH-PTIFQAXXXXXXXXXXXXXXDVSMQW-NNSYNENILCFTNNILQV 638
Y+ N K +H P F+ DVS+QW ++SY++ +L + N+I +
Sbjct: 316 EYVKWLNTDKKSLHDPIAFRKEMDGITV-------DVSLQWCSDSYSDTVLGYANSIRTI 368
Query: 639 DGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQT 698
DGGTH+ GL++ +TR IN + ++++ LK I + GE +REG+TC++++K+P+P+F QT
Sbjct: 369 DGGTHIDGLKTSLTRTINNFAKKSKTLKDKDISLSGEHVREGMTCIIAVKVPNPEFEGQT 428
Query: 699 KNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXXXXXXLTRKKN 758
K +L + EVR+ VE+ + + L ++L+ +P I L R K+
Sbjct: 429 KTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSILSKSLNALKAALAAKRARELVRTKS 488
Query: 759 LIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKA 818
++ L KLADC +PE E++IVEGDSAGGS KQGRDR+FQA+LPLRGK+LNIE+
Sbjct: 489 VLKSSSLPGKLADCASSDPEESEIFIVEGDSAGGSAKQGRDRKFQAILPLRGKILNIERR 548
Query: 819 RFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYR 878
+ +E+ + ++FN E LRYH+I+I+TDAD+DGAHIR LLLTFF+R
Sbjct: 549 DEAALYKNEEIQNLIVALGLGVKGEDFNKEALRYHKIVILTDADVDGAHIRTLLLTFFFR 608
Query: 879 KMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIE 913
L + G IY+ PPLYK++ G Y DD +
Sbjct: 609 YQKALFDEGCIYVGVPPLYKVERGKQAHYCYDDAD 643
Score = 172 (65.6 bits), Expect = 1.5e-125, Sum P(2) = 1.5e-125
Identities = 36/90 (40%), Positives = 57/90 (63%)
Query: 1071 YTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISA 1130
Y + +++N A + QR+KGLGEM P QLWETTM+P R L ++K++DA A
Sbjct: 639 YDDADLKELVNTFPTNASYHI--QRFKGLGEMMPAQLWETTMDPERRMLKQLKVEDAAEA 696
Query: 1131 DKIFMTLMGDNVELRRKFIELNALHAKNID 1160
+ +F +LMG V++R++ I+ NA N++
Sbjct: 697 NVVFSSLMGTRVDVRKQLIQ-NAASMVNLE 725
>TIGR_CMR|BA_0005 [details] [associations]
symbol:BA_0005 "DNA gyrase, B subunit" species:198094
"Bacillus anthracis str. Ames" [GO:0003916 "DNA topoisomerase
activity" evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF EMBL:AF090333
RefSeq:NP_842577.1 RefSeq:YP_016608.1 RefSeq:YP_026296.1
ProteinModelPortal:Q9X3Y6 PRIDE:Q9X3Y6 DNASU:1083919
EnsemblBacteria:EBBACT00000010328 EnsemblBacteria:EBBACT00000015641
EnsemblBacteria:EBBACT00000021045 GeneID:1083919 GeneID:2816408
GeneID:2848886 KEGG:ban:BA_0005 KEGG:bar:GBAA_0005 KEGG:bat:BAS0005
ProtClustDB:PRK05644 BioCyc:BANT260799:GJAJ-5-MONOMER
BioCyc:BANT261594:GJ7F-5-MONOMER Uniprot:Q9X3Y6
Length = 640
Score = 1005 (358.8 bits), Expect = 4.5e-124, Sum P(2) = 4.5e-124
Identities = 208/492 (42%), Positives = 293/492 (59%)
Query: 434 RSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRY 493
R A E++MT LHAGGKF YK+SGGLHG+G S VN LS L++ ++R KIHY ++
Sbjct: 93 RPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYE- 151
Query: 494 GVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIE-FHYEILKKRIRELS 552
GI V+ +K+IGDT++ GT F D +IF + ++ L R+REL+
Sbjct: 152 -----------RGIPVADLKVIGDTDQTGTITRFKPDPEIFQETTVYEFDTLATRMRELA 200
Query: 553 FLNNGVCITLIDERXXXXXXXXXXXX-TSGFVSYINKSKLVVH--PTIFQAXXXXXXXXX 609
FLN + +T+ D+R +V ++N+SK +H P +
Sbjct: 201 FLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQV-- 258
Query: 610 XXXXXDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSK 669
+VS+Q+N Y NI FTNNI +GGTH G ++ +TR IN Y +N LK +
Sbjct: 259 -----EVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 313
Query: 670 IEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGE 729
+ GED+REGLT ++SIK P+P+F QTK KL +SE R E + + FL ENP
Sbjct: 314 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 373
Query: 730 SKLICXXXXXXXXXXXXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDS 789
++ I LTR+K+ ++ L KLADC K+P + E+YIVEGDS
Sbjct: 374 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 433
Query: 790 AGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEK 849
AGGS KQGRDR FQA+LPL+GK++N+EKAR +KI+ +++ D F++EK
Sbjct: 434 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGD-FDIEK 492
Query: 850 LRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLR 909
RYH++IIMTDAD+DGAHIR LLLTFFYR M ++IE+GYIYIAQPPL+K++ G Y
Sbjct: 493 ARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQGKKIQYAY 552
Query: 910 DDIEEERYMLKI 921
++ E E+ + ++
Sbjct: 553 NEKELEKILAEL 564
Score = 498 (180.4 bits), Expect = 1.5e-68, Sum P(2) = 1.5e-68
Identities = 111/254 (43%), Positives = 149/254 (58%)
Query: 343 QESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKIN 402
QE+SY S IQ+LEGLEAVRKRP MYIG TS G GLHH V+EI+DN+IDE+LAGYC +IN
Sbjct: 7 QENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEIN 65
Query: 403 VTIYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLH 462
V+I GRG R A E++MT LHAGGKF YK+SGGLH
Sbjct: 66 VSIEEDNSIRVTDNGRGIPVGIQEKMG----RPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121
Query: 463 GIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQG 522
G+G S VN LS L++ ++R KIHY ++ GI V+ +K+IGDT++ G
Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYE------------RGIPVADLKVIGDTDQTG 169
Query: 523 TKIHFWVDEKIFSNIE-FHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXX-TS 580
T F D +IF + ++ L R+REL+FLN + +T+ D+R
Sbjct: 170 TITRFKPDPEIFQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIK 229
Query: 581 GFVSYINKSKLVVH 594
+V ++N+SK +H
Sbjct: 230 SYVEHLNRSKQPIH 243
Score = 235 (87.8 bits), Expect = 4.5e-124, Sum P(2) = 4.5e-124
Identities = 51/97 (52%), Positives = 66/97 (68%)
Query: 1066 EKIK-KYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKI 1124
+KI+ Y KI+ L + + + QRYKGLGEMNP QLWETTM+P +R LL+V +
Sbjct: 546 KKIQYAYNEKELEKILAELPAQPKPGI--QRYKGLGEMNPTQLWETTMDPEVRSLLQVSL 603
Query: 1125 KDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 1161
+DAI AD+ F LMGD VE RR FI+ NA + KN+DI
Sbjct: 604 QDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 640
Score = 45 (20.9 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 12/64 (18%), Positives = 31/64 (48%)
Query: 294 LKITVSSSNREKASEELEINYNGKDKNFIKFLIKIMLLKNKNSYDIQDTQESSYSASSIQ 353
+K+T+ K ++ E +Y G K++++ L + ++ ++ +++ S+Q
Sbjct: 206 IKLTIEDKREHK--QKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQ 263
Query: 354 ILEG 357
EG
Sbjct: 264 YNEG 267
Score = 37 (18.1 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 11 AILHPLQMVISIVEKKNILPILSN 34
AIL PL+ I VEK + ILSN
Sbjct: 448 AIL-PLKGKIINVEKARLDKILSN 470
>UNIPROTKB|P35886 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:100226
"Streptomyces coelicolor A3(2)" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 GenomeReviews:AL645882_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 EMBL:L27063
EMBL:AL939118 eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF ProtClustDB:PRK05644
HOGENOM:HOG000075154 RefSeq:NP_628061.1 ProteinModelPortal:P35886
GeneID:1099310 KEGG:sco:SCO3874 PATRIC:23737532 Uniprot:P35886
Length = 686
Score = 1067 (380.7 bits), Expect = 4.5e-122, Sum P(2) = 4.5e-122
Identities = 232/610 (38%), Positives = 342/610 (56%)
Query: 345 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVT 404
+SY AS+I +LEGL+AVRKRP MYIG T + GLHH V E++DN++DE+LAG+ I+VT
Sbjct: 31 ASYDASAITVLEGLDAVRKRPGMYIGSTGE-RGLHHLVQEVVDNSVDEALAGHADTIDVT 89
Query: 405 IYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGI 464
I GRG + A E+V+T LHAGGKF Y +SGGLHG+
Sbjct: 90 ILPDGGVRVVDNGRGIPVGIVPSEG----KPAVEVVLTVLHAGGKFGGGGYAVSGGLHGV 145
Query: 465 GLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTK 524
G+S VN LS + + + + E++ GV + + T + GT
Sbjct: 146 GVSVVNALSTRVAVEVKTDGYRWTQEYKLGVPTASLARH------------EATEETGTT 193
Query: 525 IHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXX------ 578
+ FW D IF ++ +E L +R +E++FLN G+ I L DER
Sbjct: 194 VTFWADGDIFETTDYSFETLSRRFQEMAFLNKGLKINLTDERESAKATAGADEAGEDEKH 253
Query: 579 ---------TSG---FVSYINKSK-LVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNNSYN 625
G FV+Y+N K +VHPT+ +V+MQWN Y
Sbjct: 254 EVKSVSYHYEGGIVDFVTYLNSRKGELVHPTVIDLEAEDKDKSLSL---EVAMQWNGGYT 310
Query: 626 ENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVL 685
E + F N I +GGTH G R+ +T INKY + + L++ + G+DIREGLT ++
Sbjct: 311 EGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAII 370
Query: 686 SIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXX 745
S+K+ +P+F QTK KL ++EV+ V++++ + L D+L NP E+ I
Sbjct: 371 SVKLAEPQFEGQTKTKLGNTEVKTFVQKVVYEHLTDWLDRNPNEAADIIRKGIQAAHARV 430
Query: 746 XXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAV 805
LTR+K L++ L KL+DCQ +P CE++IVEGDSAGGS K GR+ ++QA+
Sbjct: 431 AARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAI 490
Query: 806 LPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADIDG 865
LP+RGK+LN+EKAR ++I+ +++ +D F++EKLRYH+II+M DAD+DG
Sbjct: 491 LPIRGKILNVEKARIDRILQNQEIQAMISAFGTGVHED-FDIEKLRYHKIILMADADVDG 549
Query: 866 AHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNEC-YLRDDIEEERY--MLKIA 922
HI LLLTF +R M L+E G++Y+++PPLYKIK+G ++ Y D E + M + A
Sbjct: 550 QHINTLLLTFLFRFMRPLVESGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALIEMGRQA 609
Query: 923 FKNVKLISIE 932
K ++ S++
Sbjct: 610 GKRIREDSVQ 619
Score = 154 (59.3 bits), Expect = 4.5e-122, Sum P(2) = 4.5e-122
Identities = 34/68 (50%), Positives = 45/68 (66%)
Query: 1094 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNA 1153
QR+KGLGEMN +L TTM+ R L +V + DA AD +F LMG++VE RR FI+ NA
Sbjct: 619 QRFKGLGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLFSVLMGEDVEARRAFIQRNA 678
Query: 1154 LHAKNIDI 1161
+ +DI
Sbjct: 679 KDVRFLDI 686
>UNIPROTKB|Q7NHM9 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:251221
"Gloeobacter violaceus PCC 7421" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
OMA:IFETTEF ProtClustDB:PRK05644 EMBL:BA000045
GenomeReviews:BA000045_GR HSSP:P06982 RefSeq:NP_925452.1
ProteinModelPortal:Q7NHM9 GeneID:2600907 KEGG:gvi:gvip344
PATRIC:22044491 BioCyc:GVIO251221:GH9A-2555-MONOMER Uniprot:Q7NHM9
Length = 644
Score = 992 (354.3 bits), Expect = 2.9e-118, Sum P(2) = 2.9e-118
Identities = 220/531 (41%), Positives = 299/531 (56%)
Query: 377 GLHHFVFEILDNAIDESLAGYCTKINVTIYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSA 436
GLHH V+EI+DN++DE+LAG+C I +++ GRG +S
Sbjct: 34 GLHHLVYEIVDNSVDEALAGHCKHIAISLGADGSATITDDGRGIPTDTHPRTG----KST 89
Query: 437 AEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVL 496
E V+T L AGGKF YK+SGGLHG+G + VN LS L TI R K + F G+
Sbjct: 90 IETVLTVLGAGGKFGGGGYKVSGGLHGVGAAVVNALSTILTATIWREGKQYIQRFHRGIP 149
Query: 497 QNRIIKTINGISVSPIKIIGDTNKQ-GTKIHFWVDEKIFSN-IEFHYEILKKRIRELSFL 554
+ G++VS D+ K+ GT I F D +IF+ ++F ++ L R REL+FL
Sbjct: 150 EG-------GLAVS-----SDSQKRRGTMISFLPDPEIFTTGVDFDFDTLLSRFRELAFL 197
Query: 555 NNGVCITLIDERXXXXXXXXXXXXTS--GFVSYINKSKLVVHPTIFQAXXXXXXXXXXXX 612
N GV D R +V Y+ + K +HP I
Sbjct: 198 NAGVEFRFSDLRGETERTESYIYEGGIREYVKYMTREKAALHPDII-----FINQERDGV 252
Query: 613 XXDVSMQWNNS-YNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIE 671
+ ++QW+ YN+N+L F NNI +DGGTHL GL++ +TR N + + LK
Sbjct: 253 SVECALQWSTDVYNDNVLGFANNIRTIDGGTHLEGLKAVLTRTFNSFARKANKLKDGDKN 312
Query: 672 IIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESK 731
+ GE +REGLT VLS+K+P+P+F QTK KL + EVR V+ +I + L ++L+ +P
Sbjct: 313 LTGEHVREGLTAVLSVKVPNPEFEGQTKTKLGNPEVRGIVDGVISEKLTEYLEFHPDVVA 372
Query: 732 LICXXXXXXXXXXXXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAG 791
I L R+K+ ++ L KLADCQ ++P E+++VEGDSAG
Sbjct: 373 SILEKALQSMQAEEAARKARDLVRRKSALESSTLPGKLADCQSRDPAESEVFLVEGDSAG 432
Query: 792 GSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLR 851
GS KQGRDRRFQA+LPLRGK+LNIE+A KI + + + +EF++ +LR
Sbjct: 433 GSAKQGRDRRFQAILPLRGKILNIERADDRKIYGNNEIQAMITGLGLGLKTEEFDVGRLR 492
Query: 852 YHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYG 902
YHRIIIMTDAD+DGAHIR LLLTFFYR L+E GYIYIAQPPLYKI G
Sbjct: 493 YHRIIIMTDADVDGAHIRTLLLTFFYRYKRDLVEQGYIYIAQPPLYKISIG 543
Score = 398 (145.2 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
Identities = 97/255 (38%), Positives = 131/255 (51%)
Query: 346 SYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTI 405
+Y A IQ+LEGLE VRKRP MYIG T GLHH V+EI+DN++DE+LAG+C I +++
Sbjct: 4 TYGAEQIQVLEGLEHVRKRPGMYIGSTGP-RGLHHLVYEIVDNSVDEALAGHCKHIAISL 62
Query: 406 YXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIG 465
GRG +S E V+T L AGGKF YK+SGGLHG+G
Sbjct: 63 GADGSATITDDGRGIPTDTHPRTG----KSTIETVLTVLGAGGKFGGGGYKVSGGLHGVG 118
Query: 466 LSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKI 525
+ VN LS L TI R K + F G+ + G++VS ++GT I
Sbjct: 119 AAVVNALSTILTATIWREGKQYIQRFHRGIPEG-------GLAVSS----DSQKRRGTMI 167
Query: 526 HFWVDEKIFSN-IEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTS--GF 582
F D +IF+ ++F ++ L R REL+FLN GV D R +
Sbjct: 168 SFLPDPEIFTTGVDFDFDTLLSRFRELAFLNAGVEFRFSDLRGETERTESYIYEGGIREY 227
Query: 583 VSYINKSKLVVHPTI 597
V Y+ + K +HP I
Sbjct: 228 VKYMTREKAALHPDI 242
Score = 193 (73.0 bits), Expect = 2.9e-118, Sum P(2) = 2.9e-118
Identities = 44/82 (53%), Positives = 53/82 (64%)
Query: 1083 LRNEAENMVIK-QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDN 1141
LR EN + QR+KGLGEM QLWETTMNP R L +V I+DA AD++F LMGD
Sbjct: 563 LRGLRENQKYELQRFKGLGEMQADQLWETTMNPETRTLRQVTIEDAAEADRVFNILMGDR 622
Query: 1142 VELRRKFIELNA--LHAKNIDI 1161
VE RR+FIE L ++DI
Sbjct: 623 VEPRREFIETYGPRLQMADLDI 644
>UNIPROTKB|Q9RVW5 [details] [associations]
symbol:DR_0906 "DNA gyrase, subunit B" species:243230
"Deinococcus radiodurans R1" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 EMBL:AE000513
GenomeReviews:AE000513_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 KO:K02470 Gene3D:3.40.50.670 OMA:IFETTEF
ProtClustDB:PRK05644 HOGENOM:HOG000075154 HSSP:P06982 PIR:A75461
RefSeq:NP_294630.1 ProteinModelPortal:Q9RVW5 SMR:Q9RVW5
GeneID:1799432 KEGG:dra:DR_0906 PATRIC:21629376
BioCyc:DRAD243230:GH46-1277-MONOMER Uniprot:Q9RVW5
Length = 663
Score = 1009 (360.2 bits), Expect = 7.6e-118, Sum P(2) = 7.6e-118
Identities = 243/667 (36%), Positives = 361/667 (54%)
Query: 347 YSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIY 406
Y+A I +LEG++AVRKRP MY+ + G H + EI+DN IDE LAG+ +I + ++
Sbjct: 13 YNADQISVLEGMDAVRKRPGMYVQGGTGIDGYHQLLTEIIDNGIDEGLAGFAGEIQIVLH 72
Query: 407 XXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGL 466
GRG R A E++ +ELHAGGKF + +YK+SGGLHG+G
Sbjct: 73 ADGSATVTDDGRGIPVDIMKSKG----RPAIEVIFSELHAGGKFGQGAYKVSGGLHGVGS 128
Query: 467 SCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQ---GT 523
+ VN LS +L +T+N++K++H++ F GVL V P++++G T K T
Sbjct: 129 TVVNALSTYLDVTVNKHKQLHHIRFERGVL------------VQPLEVLGATPKDVKWST 176
Query: 524 KIHFWVDEKIFSNIE--FHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXX--T 579
K+ F D IF + F Y ++ R+REL++L G+ I + DER
Sbjct: 177 KVSFHPDPTIFKEFDNQFDYLRIRNRLRELAYLT-GLKIVIRDERTELHGGEIKEEVFHE 235
Query: 580 SGFVSYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNNSY-NENILCFTNNILQV 638
G ++ ++ + + +V+ N+Y ++NIL + N I
Sbjct: 236 KGGIANFARALVTDDTKLLYDQPVVMRGTHAEVEVEVAFIHANTYASDNILTYANMIRTR 295
Query: 639 DGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQT 698
DGGT LTG ++ TR +NKY ++ +K G+D+ EG+ CV+S+K+ DP+F SQ
Sbjct: 296 DGGTPLTGFKTAYTRVLNKYAKDKNLIKAGNPVPSGDDLLEGIYCVVSVKVGDPQFESQA 355
Query: 699 KNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXXXXXXLTRKKN 758
K KL++SE + V I+ + FL+ENP K I + R+ N
Sbjct: 356 KVKLLNSEAQTAVNAIVGEKFAQFLEENPKIGKTIVEKAAEAARARDAARKARDIVRRSN 415
Query: 759 LIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKA 818
+++ +L KLADC ++P EL+IVEG+SAGGS K GR+RRFQA+LPLRGK+LN+EKA
Sbjct: 416 PLENDDLPGKLADCSSQDPAESELFIVEGNSAGGSAKGGRERRFQAILPLRGKILNVEKA 475
Query: 819 RFEKIILSEQXXXXXXXXXXXX----EQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLT 874
KI+ + + E+ F+LE LRYH+I+IMTDAD+DG HI LLLT
Sbjct: 476 ELNKILKNAEIRSLIGAIGAGFDGKGEEMRFDLENLRYHKIVIMTDADMDGGHITTLLLT 535
Query: 875 FFYRKMPKLIEYGYIYIAQPPLYKIKYG----NNE-CYLRDDIEEERYMLKIAFKNVKLI 929
FF+R M ++E G++YIAQPPLYKI G NN+ YL + EE + + A K K
Sbjct: 536 FFFRFMRPIVEQGHLYIAQPPLYKITVGAQTKNNKGVYLFTN-EELKEHVADAVKAGKKY 594
Query: 930 SIEN----GDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIM-SDVILNLD-TRE 983
I+ G++ E + ++ + ++ V II I A+M S+V D RE
Sbjct: 595 EIQRFKGLGEMNAEQLWETTMNPETRVLKRVSIDDLIIANEIFDALMGSEVAPRKDFIRE 654
Query: 984 NAEQFAK 990
NA +FA+
Sbjct: 655 NA-RFAE 660
Score = 172 (65.6 bits), Expect = 7.6e-118, Sum P(2) = 7.6e-118
Identities = 37/64 (57%), Positives = 43/64 (67%)
Query: 1094 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNA 1153
QR+KGLGEMN QLWETTMNP R L +V I D I A++IF LMG V R+ FI NA
Sbjct: 597 QRFKGLGEMNAEQLWETTMNPETRVLKRVSIDDLIIANEIFDALMGSEVAPRKDFIRENA 656
Query: 1154 LHAK 1157
A+
Sbjct: 657 RFAE 660
>UNIPROTKB|Q89W70 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:224911
"Bradyrhizobium japonicum USDA 110" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265 EMBL:BA000040
GenomeReviews:BA000040_GR GO:GO:0003918 SUPFAM:SSF56719
HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939 HSSP:P06982
RefSeq:NP_767463.1 ProteinModelPortal:Q89W70 SMR:Q89W70
GeneID:1047796 KEGG:bja:bll0823 PATRIC:21185152
BioCyc:BJAP224911:GJEJ-831-MONOMER Uniprot:Q89W70
Length = 811
Score = 1133 (403.9 bits), Expect = 6.4e-115, P = 6.4e-115
Identities = 265/671 (39%), Positives = 374/671 (55%)
Query: 501 IKTINGISVSPIKIIGDT-NKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVC 559
I+ +G +V+P+ ++GD K+GT++ F F NIE+ + L+ R+REL+FLN+GV
Sbjct: 158 IEFAHGDAVAPLVVVGDAPGKRGTEVTFLASPDTFKNIEYDFATLEHRLRELAFLNSGVN 217
Query: 560 ITLIDERXXXXXXXXXXXX--TSGFVSYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVS 617
I L D R FV Y++++K + P + +
Sbjct: 218 IALSDMRHAVEKREEMHYSGGVEEFVKYLDRNKKAIVPAPIMVRAEANGIGV-----EAA 272
Query: 618 MQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDI 677
+ WN+SY+EN+LCFTNNI Q DGGTHL G R +TR +N Y E N KK KI + G+D
Sbjct: 273 LWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEANA--KKEKIALTGDDC 330
Query: 678 REGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXX 737
REGLT VLS+K+PDPKF+SQTK+KLVSSEVR VE ++ + L + +E+P E+K+I
Sbjct: 331 REGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLNEALQAWFEEHPSEAKMIVGKV 390
Query: 738 XXXXXXXXXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQG 797
LTRK L L KLADCQEK+P EL+IVEGDSAGGS KQG
Sbjct: 391 IQAAAAREAARKARELTRKSPLSVS-SLPGKLADCQEKDPAKSELFIVEGDSAGGSAKQG 449
Query: 798 RDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIII 857
R+R FQAVLPLRGK+LN+E+ R +K++ SEQ DEF++EKLRYH+II+
Sbjct: 450 RNREFQAVLPLRGKILNVERVRPDKMLGSEQIGTLITALGTGIS-DEFSIEKLRYHKIIV 508
Query: 858 MTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERY 917
MTDAD+DGAHIR LLLTFFYR+M +I+ GY+YIAQPPLYK+ G +E YL+D+ E Y
Sbjct: 509 MTDADVDGAHIRTLLLTFFYRQMRDIIDGGYLYIAQPPLYKVSRGKSEQYLKDERALEDY 568
Query: 918 MLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRL-----KQIIDISILSAIM 972
+++ + GD + LID I+ L +++++ + ++ ++
Sbjct: 569 LIETGLDDCIFTPGTGGDRSGRD-LRGLIDDARVVRSILRNLHTRYNRKVVEQAAITGVL 627
Query: 973 S-DVILNLDTRENAEQF-AKKIIKKLNDSNIEIIVEFDQXXXXXXXXXXXXXXXXXXXXX 1030
+ D+ + D A Q+ A ++ K+ D + + +
Sbjct: 628 NKDIYGDPDKAAAAAQYVAGRLDKQAEDVERGWVGHYVEGQGFQFERTVRGVKDVAII-- 685
Query: 1031 DINFINNKDYKKLVSIISTFXXXXXXXXXXXXXXXEKIKKYTANNFYKIINYLRNEAENM 1090
D F+ + + +KL F K ++T + + + +
Sbjct: 686 DSAFLGSAEARKL----DEFTPKLQDVYARPGNLRRKDVEHTVHGPVDLFEAVTDAGRKG 741
Query: 1091 VIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIE 1150
V QRYKGLGEMNP QLWETT++ R LL+VK+K+ AD IF LMGD VE RR FI+
Sbjct: 742 VTLQRYKGLGEMNPEQLWETTLDTNARSLLQVKVKEVDEADDIFTKLMGDVVEPRRDFIQ 801
Query: 1151 LNALHAKNIDI 1161
++L A IDI
Sbjct: 802 EHSLSA-TIDI 811
Score = 523 (189.2 bits), Expect = 2.7e-47, P = 2.7e-47
Identities = 112/259 (43%), Positives = 158/259 (61%)
Query: 340 QDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCT 399
+ + S Y A SI++L+GL+AVRKRP MYIGDT DG+GLHH V+E++DNAIDE+LAG+ T
Sbjct: 13 EPSNPSDYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 72
Query: 400 KINVTIYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISG 459
+++V + GRG SAAE++MT+LHAGGKF++NSYK+SG
Sbjct: 73 RVDVVLNADNSVTVRDDGRGIPVDIHKGEGI----SAAEVIMTQLHAGGKFDQNSYKVSG 128
Query: 460 GLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDT- 518
GLHG+G+S VN LS L L I R+ K HY+EF +G +V+P+ ++GD
Sbjct: 129 GLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGD------------AVAPLVVVGDAP 176
Query: 519 NKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXX 578
K+GT++ F F NIE+ + L+ R+REL+FLN+GV I L D R
Sbjct: 177 GKRGTEVTFLASPDTFKNIEYDFATLEHRLRELAFLNSGVNIALSDMRHAVEKREEMHYS 236
Query: 579 --TSGFVSYINKSKLVVHP 595
FV Y++++K + P
Sbjct: 237 GGVEEFVKYLDRNKKAIVP 255
>TIGR_CMR|CJE_0003 [details] [associations]
symbol:CJE_0003 "DNA gyrase, B subunit" species:195099
"Campylobacter jejuni RM1221" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 GO:GO:0006261 EMBL:CP000025
GenomeReviews:CP000025_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939
RefSeq:YP_178032.1 ProteinModelPortal:Q5HXF3 STRING:Q5HXF3
GeneID:3230659 KEGG:cjr:CJE0003 PATRIC:20041695
BioCyc:CJEJ195099:GJC0-3-MONOMER Uniprot:Q5HXF3
Length = 769
Score = 891 (318.7 bits), Expect = 4.0e-114, Sum P(3) = 4.0e-114
Identities = 197/490 (40%), Positives = 280/490 (57%)
Query: 506 GISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDE 565
G +S +IG + K GT I FW D++IF EF YEIL KR REL++LN + I D
Sbjct: 147 GKVISEFGVIGKSKKTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDN 206
Query: 566 RXXXXXXXXXXXXTSGFVSYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNNSYN 625
R S FV +NK + + F +V++ +N++Y+
Sbjct: 207 RVGKHESFHFEGGISQFVIDLNKKEALTKAIFFSVDEEDVNV-------EVALLYNDTYS 259
Query: 626 ENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVL 685
EN+L F NNI DGGTH G R G+TR I+ YIE N ++ +I GED+REGL V+
Sbjct: 260 ENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVV 319
Query: 686 SIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXX 745
S+K+P+P+F QTK KL S+ VR V + + L + +ENP E+K I
Sbjct: 320 SVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKVLMAARGRE 379
Query: 746 XXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAV 805
LTRKK + L KLADCQ K+P E+Y+VEGDSAGGS KQGR+R FQA+
Sbjct: 380 AAKKARELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAI 439
Query: 806 LPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADIDG 865
LPLRGK+LN+EKAR +KI+ SEQ +D F+L KLRYH+IIIMTDAD+DG
Sbjct: 440 LPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDADVDG 498
Query: 866 AHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKN 925
+HI+ LLLTFF+R M +L+ G+IY+AQPPLY K + YL+D+ Y+++ +
Sbjct: 499 SHIQTLLLTFFFRFMNELVANGHIYLAQPPLYLYKKAKKQIYLKDEKALSEYLIETGIEG 558
Query: 926 VKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENA 985
+ I D+ K+ + K++ Y ++ + + +I S++ ++ + NL N
Sbjct: 559 LNYEGIGMNDL-KD--YLKIVAAYRAILKDLEKRFNVI--SVIRYMIENS--NLVKGNNE 611
Query: 986 EQFAKKIIKK 995
E F+ +IK+
Sbjct: 612 ELFS--VIKQ 619
Score = 480 (174.0 bits), Expect = 1.0e-59, Sum P(2) = 1.0e-59
Identities = 106/255 (41%), Positives = 146/255 (57%)
Query: 344 ESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINV 403
+ +Y AS+I++L+GLEAVRKRP MYIGDT+ G GLHH ++E++DN+IDE++AG+C I+V
Sbjct: 2 QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTIDV 60
Query: 404 TIYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHG 463
I GRG +V+T LHAGGKF+K++YK+SGGLHG
Sbjct: 61 EITTEGSCIVSDNGRGIPVDMHPTENM----PTLTVVLTVLHAGGKFDKDTYKVSGGLHG 116
Query: 464 IGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGT 523
+G+S VN LS+ L T+ RN +I+ EF G + +S +IG + K GT
Sbjct: 117 VGVSVVNALSKKLVATVERNGEIYRQEFSEGKV------------ISEFGVIGKSKKTGT 164
Query: 524 KIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSGFV 583
I FW D++IF EF YEIL KR REL++LN + I D R S FV
Sbjct: 165 TIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGKHESFHFEGGISQFV 224
Query: 584 SYINKSKLVVHPTIF 598
+NK + + F
Sbjct: 225 IDLNKKEALTKAIFF 239
Score = 209 (78.6 bits), Expect = 4.0e-114, Sum P(3) = 4.0e-114
Identities = 41/84 (48%), Positives = 57/84 (67%)
Query: 1078 KIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTL 1137
+++ + A+ QRYKGLGEMNP QLWETTM+P +R LLK+ I+DA SA+ F
Sbjct: 686 EVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLF 745
Query: 1138 MGDNVELRRKFIELNALHAKNIDI 1161
MGD VE RR +I+ +A K++D+
Sbjct: 746 MGDEVEPRRDYIQAHAKDVKHLDV 769
Score = 60 (26.2 bits), Expect = 4.0e-114, Sum P(3) = 4.0e-114
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 489 MEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIE 538
M+ YG +++K + + P IGDTN G +H + E + ++I+
Sbjct: 1 MQENYGASNIKVLKGLEAVRKRPGMYIGDTNIGG--LHHMIYEVVDNSID 48
Score = 54 (24.1 bits), Expect = 7.9e-98, Sum P(3) = 7.9e-98
Identities = 29/116 (25%), Positives = 46/116 (39%)
Query: 1038 KDYKKLVSIISTFXXXXXXXXXXXXXXXEK---IKKYTANNFYKIINYLRNEAENMVIKQ 1094
KD +K ++IS E IK++ + I+N+ NE E Q
Sbjct: 584 KDLEKRFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQGHNILNHYINENEIRAFVQ 643
Query: 1095 RYKGLGEMNPGQLWETTMNPMIRCLLKV--KIKD-AISADKIFMTLMGDNVELRRK 1147
GL E+ + E +P+ + KIKD + DK + ++ D VE K
Sbjct: 644 TQNGLEELVINE--ELFTHPLYEEANYIFDKIKDRGLEFDKDILEVLED-VETNAK 696
Score = 37 (18.1 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 6/43 (13%), Positives = 21/43 (48%)
Query: 130 EFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIA 172
+F + + + ++FS+ ++D+ + L +N+++
Sbjct: 222 QFVIDLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLS 264
>TIGR_CMR|BA_3657 [details] [associations]
symbol:BA_3657 "DNA topoisomerase IV, B subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009340 "DNA topoisomerase IV
complex" evidence=ISS] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR005740 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
HOGENOM:HOG000075154 KO:K02622 OMA:TDGTGLH ProtClustDB:PRK05559
TIGRFAMs:TIGR01058 HSSP:P06982 RefSeq:NP_845922.1
RefSeq:YP_020292.2 RefSeq:YP_029649.1 ProteinModelPortal:Q81Y98
IntAct:Q81Y98 DNASU:1085976 EnsemblBacteria:EBBACT00000013021
EnsemblBacteria:EBBACT00000015630 EnsemblBacteria:EBBACT00000022573
GeneID:1085976 GeneID:2818281 GeneID:2850873 KEGG:ban:BA_3657
KEGG:bar:GBAA_3657 KEGG:bat:BAS3392
BioCyc:BANT260799:GJAJ-3454-MONOMER
BioCyc:BANT261594:GJ7F-3563-MONOMER Uniprot:Q81Y98
Length = 654
Score = 898 (321.2 bits), Expect = 7.1e-109, Sum P(2) = 7.1e-109
Identities = 193/472 (40%), Positives = 271/472 (57%)
Query: 438 EIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQ 497
E+++T LHAGGKF + YK SGGLHG+G S VN LS +L +TI R+ I+ F G
Sbjct: 93 EVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLVVTIKRDGNIYEQRFENG--- 149
Query: 498 NRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNG 557
G+ V+ ++ IG T + GT +HF D IFS ++YE L +R+RE +FL G
Sbjct: 150 --------GVPVTTLEKIGKTKESGTTMHFKPDTTIFSTTNYNYETLCERLRESAFLLKG 201
Query: 558 VCITLIDERXXXXXXXXXXXXTSGFVSYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVS 617
+ I++ DER FVSY+N+ K +HP ++ +++
Sbjct: 202 MKISIKDERNDLEDVFHYETGIEAFVSYLNEEKDSIHPVVY------FTGEQNGIEAELA 255
Query: 618 MQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDI 677
Q+N+ Y+ENIL F NN+ DGGTH G ++ +TR N+Y + LK+ + G DI
Sbjct: 256 FQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRVFNEYARKVALLKEKDKNLEGTDI 315
Query: 678 REGLTCVLSIKIPDP--KFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICX 735
REG+ ++S+++P+ +F QTK KL +SE R ++ I+ + L FL+ENP + L+
Sbjct: 316 REGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSIDAIVSEHLAYFLEENPDVATLLVR 375
Query: 736 XXXXXXXXXXXXXXXXXLTR--KKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGS 793
R KK + LS KL Q +NP+ ELY+VEGDSAGGS
Sbjct: 376 KAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLTPAQSRNPQKNELYLVEGDSAGGS 435
Query: 794 VKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYH 853
KQGRDRRFQAVLPLRGKV+N EKA+ I +E+ +EF++E + Y
Sbjct: 436 AKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIYAIGGGVG-NEFDVEDINYD 494
Query: 854 RIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNE 905
+++IMTDAD DGAHI+ LLLTFFYR M LIE G ++IA PPLYK+ G +
Sbjct: 495 KVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGK 546
Score = 479 (173.7 bits), Expect = 2.2e-61, Sum P(2) = 2.2e-61
Identities = 104/252 (41%), Positives = 145/252 (57%)
Query: 347 YSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIY 406
Y+ +IQ+LEGLEAVRKRP MYIG T D GLHH V+EI+DN++DE+LAG+ +I+V I+
Sbjct: 8 YNEDAIQVLEGLEAVRKRPGMYIGST-DSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66
Query: 407 XXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGL 466
GRG + E+++T LHAGGKF + YK SGGLHG+G
Sbjct: 67 KDNSISVIDKGRGMPTGMHKLG-----KPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGA 121
Query: 467 SCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIH 526
S VN LS +L +TI R+ I+ F G G+ V+ ++ IG T + GT +H
Sbjct: 122 SVVNALSEWLVVTIKRDGNIYEQRFENG-----------GVPVTTLEKIGKTKESGTTMH 170
Query: 527 FWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSGFVSYI 586
F D IFS ++YE L +R+RE +FL G+ I++ DER FVSY+
Sbjct: 171 FKPDTTIFSTTNYNYETLCERLRESAFLLKGMKISIKDERNDLEDVFHYETGIEAFVSYL 230
Query: 587 NKSKLVVHPTIF 598
N+ K +HP ++
Sbjct: 231 NEEKDSIHPVVY 242
Score = 198 (74.8 bits), Expect = 7.1e-109, Sum P(2) = 7.1e-109
Identities = 40/59 (67%), Positives = 45/59 (76%)
Query: 1094 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELN 1152
QRYKGLGEMN QLWETTMNP R L++VKI DA A++ TLMGD VE RRK+IE N
Sbjct: 573 QRYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631
Score = 42 (19.8 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 10/49 (20%), Positives = 26/49 (53%)
Query: 490 EFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIE 538
+F+Y ++++ + + P IG T+ +G +H V E + ++++
Sbjct: 5 QFQYNEDAIQVLEGLEAVRKRPGMYIGSTDSRG--LHHLVYEIVDNSVD 51
>UNIPROTKB|O67137 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:224324 "Aquifex
aeolicus VF5" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 EMBL:AE000657
GenomeReviews:AE000657_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 PROSITE:PS50880 PIR:F70388
RefSeq:NP_213700.1 ProteinModelPortal:O67137 SMR:O67137
PRIDE:O67137 GeneID:1193771 KEGG:aae:aq_1026 PATRIC:20959360
OMA:IFETTEF ProtClustDB:PRK14939 BioCyc:AAEO224324:GJBH-733-MONOMER
Uniprot:O67137
Length = 792
Score = 1074 (383.1 bits), Expect = 1.1e-108, P = 1.1e-108
Identities = 243/674 (36%), Positives = 370/674 (54%)
Query: 491 FRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRE 550
+R G + K G V P+ ++G+T K+GTK+ F D +IF E ++I++KR+RE
Sbjct: 141 YRDGKIYRMAFK--RGEVVEPLHVVGETKKRGTKVSFKPDPEIFETTEIKFDIVEKRVRE 198
Query: 551 LSFLNNGVCITLIDERXXXXXXXXXXXXTSGFVSYINKSKLVVHPTIFQAXXXXXXXXXX 610
L++LN V L DER V Y+N+ K + I +
Sbjct: 199 LAYLNPEVKFELTDERLGKHLIYKFDRGIEELVKYLNEGKEPLFKDIIRIQGEKEGVIV- 257
Query: 611 XXXXDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKI 670
D++ Q+ Y E I F NNI V+GGTH+TG RSG+++A+ + + + K+ K
Sbjct: 258 ----DIAFQYVKDYKERIESFVNNIKTVEGGTHVTGFRSGLSKAVIRMAQGLKLAKELKK 313
Query: 671 EIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGES 730
GED+REGLT V++ K+P+P+F QTK KL + V++ VE I L + ++
Sbjct: 314 SFTGEDVREGLTAVVACKVPNPQFEGQTKTKLGNQNVKQIVESITYDFLTSYFEKKRDVL 373
Query: 731 KLICXXXXXXXXXXXXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSA 790
K I L R+K+ +++ L KLADC E +P CE+++VEGDSA
Sbjct: 374 KAIVEKAIEAALAREAAKKAKELVRRKSPLEEGVLPGKLADCSETDPSKCEIFLVEGDSA 433
Query: 791 GGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKL 850
GGS KQ RDRR+QA+LPLRGK++N+EKAR +K++ +++ +D +L+KL
Sbjct: 434 GGSAKQARDRRYQAILPLRGKIINVEKARIDKVLSNDEIKAIVSALGCGIGED-LDLKKL 492
Query: 851 RYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRD 910
RYH+II+MTDAD+DG+HIR LLLTFFYR MPKL+E GY+YIA+PPLY++K G E Y++D
Sbjct: 493 RYHKIILMTDADVDGSHIRTLLLTFFYRFMPKLVEEGYVYIAEPPLYRVKKGKKEIYIKD 552
Query: 911 DIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHR-LKQIIDISILS 969
D E E ++L + +L+ + E LID K E +R L + ++++
Sbjct: 553 DKEFEHFLLNEIREKGRLVDAREKEFKGEELVRLLIDL--KDYEDAYRALVKSKGENLVN 610
Query: 970 AIMSDVILNLDTRENA--EQFAKKIIKKLNDSNIEIIVEFDQXXXXXXXXXXXXXXXXXX 1027
+++ + D R A ++ + ++L D ++ ++++
Sbjct: 611 FLLTHRVREEDLRNPARVKEITHLMEEELGDYRVD--TKYNELEGAYDIIFYDDKLGTKT 668
Query: 1028 XXXDINFINNKDYKKLVSIISTFXXXXXXXXXXXXXXXEKIKKYTANNFYKIINYLRNEA 1087
D+NF+++ Y++++ I KK N+ +I + + A
Sbjct: 669 II-DVNFLSSLSYREVLEGIHLHLPVQVFFEN---------KKVEINSLGEIYDKFMDFA 718
Query: 1088 ENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRK 1147
+ + QRYKGLGEMNP QLWETTMNP R L KVKI+DA AD+IF LMG+ VE RR+
Sbjct: 719 RSGMEVQRYKGLGEMNPEQLWETTMNPKTRRLKKVKIEDAAEADRIFTILMGEQVEPRRE 778
Query: 1148 FIELNALHAKNIDI 1161
FIE A K++D+
Sbjct: 779 FIEAYAKEVKHLDV 792
Score = 434 (157.8 bits), Expect = 2.0e-37, P = 2.0e-37
Identities = 101/251 (40%), Positives = 139/251 (55%)
Query: 340 QDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCT 399
Q QE Y+A +I+ + GLE VR RP MYIGD + GLHH ++EILDNA+DE++AGY
Sbjct: 7 QTPQE--YTAEAIKAVSGLEHVRLRPAMYIGDIGE-RGLHHLIWEILDNAVDEAVAGYAR 63
Query: 400 KINVTIYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISG 459
I+VTI+ GRG + A E+V T L AGGKF K Y SG
Sbjct: 64 NISVTIHRDNSVTVEDDGRGIPVDIHPETG----KPAVEMVFTMLGAGGKFEKKVYTYSG 119
Query: 460 GLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTN 519
GLHG+G S VN LS +L + + R+ KI+ M F+ G + V P+ ++G+T
Sbjct: 120 GLHGVGASVVNALSEWLIVEVYRDGKIYRMAFKRGEV------------VEPLHVVGETK 167
Query: 520 KQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXT 579
K+GTK+ F D +IF E ++I++KR+REL++LN V L DER
Sbjct: 168 KRGTKVSFKPDPEIFETTEIKFDIVEKRVRELAYLNPEVKFELTDERLGKHLIYKFDRGI 227
Query: 580 SGFVSYINKSK 590
V Y+N+ K
Sbjct: 228 EELVKYLNEGK 238
>UNIPROTKB|Q8FA30 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:189518
"Leptospira interrogans serovar Lai str. 56601" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK05644 EMBL:AE010300
GenomeReviews:AE010300_GR HSSP:P06982 RefSeq:NP_710186.1
ProteinModelPortal:Q8FA30 GeneID:1149348 KEGG:lil:LA_0005
PATRIC:22380849 BioCyc:LINT189518:GJBB-5-MONOMER Uniprot:Q8FA30
Length = 639
Score = 1066 (380.3 bits), Expect = 8.1e-108, P = 8.1e-108
Identities = 223/549 (40%), Positives = 333/549 (60%)
Query: 435 SAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYG 494
S E+VMT LHAGGKF ++YK+SGGLHG+G+S VN LS +L++ +++ K++ ++
Sbjct: 91 STIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLEVEVHQKGKVYTQKYE-- 148
Query: 495 VLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFL 554
G+ VS ++I GD++++GT + F D IF+ ++F +++L R REL+FL
Sbjct: 149 ----------KGVPVSSVQIQGDSSERGTIVRFKPDATIFTTVDFQFDVLSARFRELAFL 198
Query: 555 NNGVCITLIDERXXXXXXXXXXXXTSG----FVSYINKSKLVVHPTIFQAXXXXXXXXXX 610
N G+ + + D R SG FV +IN++K +H I
Sbjct: 199 NKGLVLVVEDHRRGKENILRNEFQFSGGIVSFVEHINENKHPMHKVIH------FERNKD 252
Query: 611 XXXXDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFL-KKSK 669
++S+Q++ +Y ENI CFTNNI GGTHL G R+ +TR +N +++++ L KK
Sbjct: 253 DVLAEISIQYSETYTENIFCFTNNINNNLGGTHLEGFRAALTRTLNDFLKKDSTLSKKHP 312
Query: 670 IEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGE 729
+ GED++EGLT V+SIKIP P+FNSQTK KLV++E++ ++ + + L F +ENP
Sbjct: 313 TGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGIMQTLSSEGLTLFFEENPNI 372
Query: 730 SKLICXXXXXXXXXXXXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDS 789
+K I LTR+K +++ L KLADC EK+P ELY+VEGDS
Sbjct: 373 TKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLADCSEKDPAHSELYLVEGDS 432
Query: 790 AGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEK 849
AGGS KQGRDR QA+LPL+GK+LN+EKAR +KI+ SE+ +DEFN++K
Sbjct: 433 AGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEIRVLVSALGTGIGEDEFNIDK 492
Query: 850 LRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLR 909
+RYH+I+IMTDADIDG+HIR LLLTFF+R M +IE GY+Y+AQPPLY IK+G N Y+
Sbjct: 493 IRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIERGYLYVAQPPLYLIKHGKNSTYVY 552
Query: 910 DDIEEERYMLKIAFKNVKLISIEN-GDIIKENYFFKLIDKYNKTIEIVHRLKQIIDIS-I 967
D E+E + I + V + + G++ E + +D N+ + V +L ++
Sbjct: 553 SDKEKEELLKNIGAEKVVIQRYKGLGEMNPEQLWETTMDPSNRVVLKV-KLDDFVEAEET 611
Query: 968 LSAIMSDVI 976
+ +M D +
Sbjct: 612 FNVLMGDEV 620
Score = 491 (177.9 bits), Expect = 7.9e-67, Sum P(2) = 7.9e-67
Identities = 127/373 (34%), Positives = 200/373 (53%)
Query: 343 QESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKIN 402
+E+SYSA I+ILEGLEAVRKRP MYIG T D TGLH V+E++DN++DE++AG+CT+I
Sbjct: 4 EETSYSAGQIKILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTEIK 62
Query: 403 VTIYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLH 462
++I GRG S E+VMT LHAGGKF ++YK+SGGLH
Sbjct: 63 ISILPDNIVEVKDNGRGIPVDIHPDKKI----STIEVVMTILHAGGKFENDAYKVSGGLH 118
Query: 463 GIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQG 522
G+G+S VN LS +L++ +++ K++ ++ G+ VS ++I GD++++G
Sbjct: 119 GVGVSVVNALSEYLEVEVHQKGKVYTQKYE------------KGVPVSSVQIQGDSSERG 166
Query: 523 TKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSG- 581
T + F D IF+ ++F +++L R REL+FLN G+ + + D R SG
Sbjct: 167 TIVRFKPDATIFTTVDFQFDVLSARFRELAFLNKGLVLVVEDHRRGKENILRNEFQFSGG 226
Query: 582 ---FVSYINKSKLVVHPTI-FQAXXXXXXXXXXXXXXDVSMQ----WNNSYNENI----- 628
FV +IN++K +H I F+ + + + N+ N N+
Sbjct: 227 IVSFVEHINENKHPMHKVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHL 286
Query: 629 ------LCFT-NNILQVDGGT---HLTGL-----RSGITRAINKYIEENEFLKKSKIEII 673
L T N+ L+ D H TGL + G+T I+ I + +F ++K +++
Sbjct: 287 EGFRAALTRTLNDFLKKDSTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLV 346
Query: 674 GEDIREGLTCVLS 686
+I+ G+ LS
Sbjct: 347 NAEIK-GIMQTLS 358
Score = 226 (84.6 bits), Expect = 7.9e-67, Sum P(2) = 7.9e-67
Identities = 43/79 (54%), Positives = 57/79 (72%)
Query: 1083 LRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNV 1142
L+N V+ QRYKGLGEMNP QLWETTM+P R +LKVK+ D + A++ F LMGD V
Sbjct: 561 LKNIGAEKVVIQRYKGLGEMNPEQLWETTMDPSNRVVLKVKLDDFVEAEETFNVLMGDEV 620
Query: 1143 ELRRKFIELNALHAKNIDI 1161
+ R++FIE+NA N+D+
Sbjct: 621 QPRKQFIEVNAAKVANLDL 639
Score = 40 (19.1 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 28 ILPILSNILVCKNSEKISFLSTDTEVQI-TTYTAVGYGNSSINI 70
ILP+ IL + + LS++ E+++ + G G NI
Sbjct: 448 ILPLKGKILNVEKARLDKILSSE-EIRVLVSALGTGIGEDEFNI 490
>UNIPROTKB|Q59192 [details] [associations]
symbol:parE "DNA topoisomerase 4 subunit B" species:224308
"Bacillus subtilis subsp. subtilis str. 168" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR005740 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 EMBL:AL009126 GenomeReviews:AL009126_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 HOGENOM:HOG000075154 EMBL:Z73234
EMBL:AF024713 PIR:C69637 RefSeq:NP_389691.2
ProteinModelPortal:Q59192 SMR:Q59192
EnsemblBacteria:EBBACT00000000468 GeneID:936151 KEGG:bsu:BSU18090
PATRIC:18975449 GenoList:BSU18090 KO:K02622 OMA:TDGTGLH
ProtClustDB:PRK05559 BioCyc:BSUB:BSU18090-MONOMER BindingDB:Q59192
ChEMBL:CHEMBL3485 HAMAP:MF_00939 TIGRFAMs:TIGR01058 Uniprot:Q59192
Length = 655
Score = 874 (312.7 bits), Expect = 1.1e-105, Sum P(2) = 1.1e-105
Identities = 195/472 (41%), Positives = 267/472 (56%)
Query: 438 EIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQ 497
E+++T LHAGGKF + YK SGGLHG+G S VN LS +L +TI R+ ++ F G
Sbjct: 94 EVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLTVTIERDGFVYQQRFENG--- 150
Query: 498 NRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNG 557
G V+ ++ IG T K GT HF D +FS +++E L +R+RE +FL G
Sbjct: 151 --------GKPVTSLEKIGKTKKTGTLTHFKPDPTMFSTTTYNFETLSERLRESAFLLKG 202
Query: 558 VCITLIDERXXXXXXXXXXXXTSGFVSYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVS 617
+ I LIDER FV+Y+N+ K V+ + D +
Sbjct: 203 LKIELIDERNDQREVFYYENGIEAFVAYLNEEKDVLSEVV------SFEGEHHSIEVDFA 256
Query: 618 MQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDI 677
Q+N+ Y+ENIL F NN+ DGGTH +G ++ +TRA N+Y + LK+ + G DI
Sbjct: 257 FQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTRAFNEYARKVALLKEKDKNLEGTDI 316
Query: 678 REGLTCVLSIKIPDP--KFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICX 735
REGL+ ++S++IP+ +F QTK KL +SE R V+ I+ + L FL+EN + L+
Sbjct: 317 REGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVDAIVSEQLAYFLEENRDTATLLVK 376
Query: 736 XXXXXXXXXXXXXXXXXLTR--KKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGS 793
R KK + LS KL +NP ELY+VEGDSAGGS
Sbjct: 377 KAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAGSRNPAKNELYLVEGDSAGGS 436
Query: 794 VKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYH 853
KQGRDRRFQAVLPLRGKV+N EKA+ I +E+ D F+++ + Y
Sbjct: 437 AKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGAD-FSIDDINYD 495
Query: 854 RIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNE 905
+IIIMTDAD DGAHI+ LLLTFFYR M LIE+G ++IA PPLYK+ G+ +
Sbjct: 496 KIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGK 547
Score = 447 (162.4 bits), Expect = 4.0e-55, Sum P(2) = 4.0e-55
Identities = 103/255 (40%), Positives = 140/255 (54%)
Query: 343 QESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKIN 402
Q+ Y+ +IQ+LEGLEAVRKRP MYIG T D GLHH V+EI+DN++DE LAG+ I
Sbjct: 5 QQFDYNEDAIQVLEGLEAVRKRPGMYIGST-DARGLHHLVYEIVDNSVDEVLAGHGDHII 63
Query: 403 VTIYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLH 462
V I+ GRG + E+++T LHAGGKF + YK SGGLH
Sbjct: 64 VKIHKDNSISVQDRGRGMPTGMHKLG-----KPTPEVILTVLHAGGKFGQGGYKTSGGLH 118
Query: 463 GIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQG 522
G+G S VN LS +L +TI R+ ++ F G G V+ ++ IG T K G
Sbjct: 119 GVGASVVNALSEWLTVTIERDGFVYQQRFENG-----------GKPVTSLEKIGKTKKTG 167
Query: 523 TKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSGF 582
T HF D +FS +++E L +R+RE +FL G+ I LIDER F
Sbjct: 168 TLTHFKPDPTMFSTTTYNFETLSERLRESAFLLKGLKIELIDERNDQREVFYYENGIEAF 227
Query: 583 VSYINKSKLVVHPTI 597
V+Y+N+ K V+ +
Sbjct: 228 VAYLNEEKDVLSEVV 242
Score = 192 (72.6 bits), Expect = 1.1e-105, Sum P(2) = 1.1e-105
Identities = 39/59 (66%), Positives = 44/59 (74%)
Query: 1094 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELN 1152
QRYKGLGEMN QLWETTMNP R L++VKI DA ++ TLMGD VE RRK+IE N
Sbjct: 574 QRYKGLGEMNADQLWETTMNPESRTLVRVKIDDAARVERRVTTLMGDKVEPRRKWIEKN 632
Score = 60 (26.2 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 27/103 (26%), Positives = 54/103 (52%)
Query: 102 KSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKT------LKCI-LNMVYFSIAQQDI 154
K GK+K T K P M + Y+FE TLS++ LK + + ++ Q+++
Sbjct: 159 KIGKTKKTGTLTHFKPDPTMFSTTTYNFE-TLSERLRESAFLLKGLKIELIDERNDQREV 217
Query: 155 RYYLNGL--LLSF--QKKNIIA--VSSDGHRLTYYQVNIDKKF 191
YY NG+ +++ ++K++++ VS +G ++ + +D F
Sbjct: 218 FYYENGIEAFVAYLNEEKDVLSEVVSFEGE---HHSIEVDFAF 257
Score = 37 (18.1 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 434 RSAAEIVMTELHAGGKFNKNSYKISGGLHGIG 465
R AA E +G K K+ +SG L G
Sbjct: 385 REAARKAREEARSGKKRKKSEATLSGKLTPAG 416
>TIGR_CMR|CHY_2705 [details] [associations]
symbol:CHY_2705 "DNA gyrase, B subunit" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK05644 HOGENOM:HOG000075156 RefSeq:YP_361487.1
ProteinModelPortal:Q3A8P7 SMR:Q3A8P7 STRING:Q3A8P7 GeneID:3726578
KEGG:chy:CHY_2705 PATRIC:21278431
BioCyc:CHYD246194:GJCN-2703-MONOMER Uniprot:Q3A8P7
Length = 635
Score = 983 (351.1 bits), Expect = 4.0e-104, Sum P(2) = 4.0e-104
Identities = 211/497 (42%), Positives = 297/497 (59%)
Query: 502 KTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCIT 561
K G ++ +KIIG + GT I F D +IF +EF+Y+ L KR+ ELS+LN V I
Sbjct: 148 KFSRGEPITELKIIGKSKSTGTIITFKPDAEIFETVEFNYDTLAKRLLELSYLNKNVKII 207
Query: 562 LIDERXXXXXXXXXXXXTSGFVSYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWN 621
L DER ++ Y+NK+K +H I+ +V++Q+
Sbjct: 208 LKDERINKEEIFEHSGGIKDYLKYLNKNKEPLHKIIY------FEKEKDEVVVEVALQYC 261
Query: 622 NSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGL 681
NS++ENIL FTNNI +GGTH G ++ +TR IN Y ++ +K++ + + GEDIREGL
Sbjct: 262 NSFSENILSFTNNINTTEGGTHEIGFKTALTRVINDYAKKYNLIKENNLSLQGEDIREGL 321
Query: 682 TCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXX 741
T ++S+K+PDP+F QTK KLV++EVR V+ I+ L +L+ENP K +
Sbjct: 322 TAIISVKVPDPQFEGQTKTKLVNTEVRSIVDSIVSDYLSTYLEENPAVGKKLIENAIRAA 381
Query: 742 XXXXXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRR 801
L R+K ++ L KLADC EK+P LCELY+VEGDSAGGS KQGRDRR
Sbjct: 382 RAREAARKARELARRKTALESNTLPGKLADCSEKDPSLCELYLVEGDSAGGSAKQGRDRR 441
Query: 802 FQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDA 861
FQA+LPLRGK+LN+EK+R +KI+ +E+ ++D F++EK RYHR+IIMTDA
Sbjct: 442 FQAILPLRGKILNVEKSRLDKILANEEIRAMITALGTGVDKD-FDIEKARYHRLIIMTDA 500
Query: 862 DIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKI 921
D+DGAHIR LLLTFFYR + LIE GY+YIAQPPLYK+K G E YL D E ERY+ +I
Sbjct: 501 DVDGAHIRTLLLTFFYRYLRPLIENGYVYIAQPPLYKVKKGKLEKYLYSDDELERYLNEI 560
Query: 922 AFKNVKLISIEN-GDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLD 980
+ V + + G++ E + ++ +TI V I + +M D +
Sbjct: 561 GREGVTIQRYKGLGEMDPEQLWETTMNPETRTILKVTLEDAAKADEIFTILMGDKVE--P 618
Query: 981 TRENAEQFAKKIIKKLN 997
RE E+ AK +++ L+
Sbjct: 619 RREFIEKNAK-LVRNLD 634
Score = 484 (175.4 bits), Expect = 1.2e-67, Sum P(2) = 1.2e-67
Identities = 104/252 (41%), Positives = 145/252 (57%)
Query: 347 YSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIY 406
Y A IQ+L+GLE VRKRP MYIG T++ GLHH V+E++DN+IDE+LAG+C +I V I+
Sbjct: 10 YGAEEIQVLKGLEGVRKRPAMYIGSTNE-KGLHHLVYEVVDNSIDEALAGFCNRIEVIIH 68
Query: 407 XXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGL 466
GRG + A E+V+T LHAGGKF YK+SGGLHG+G+
Sbjct: 69 KDGSITVADNGRGIPVDIHPEVG----KPAVEVVLTMLHAGGKFGGGGYKVSGGLHGVGV 124
Query: 467 SCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIH 526
S VN LS +L++ I R+ ++Y +F G ++ +KIIG + GT I
Sbjct: 125 SVVNALSEWLEVRIKRDGNLYYQKFS------------RGEPITELKIIGKSKSTGTIIT 172
Query: 527 FWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSGFVSYI 586
F D +IF +EF+Y+ L KR+ ELS+LN V I L DER ++ Y+
Sbjct: 173 FKPDAEIFETVEFNYDTLAKRLLELSYLNKNVKIILKDERINKEEIFEHSGGIKDYLKYL 232
Query: 587 NKSKLVVHPTIF 598
NK+K +H I+
Sbjct: 233 NKNKEPLHKIIY 244
Score = 241 (89.9 bits), Expect = 1.2e-67, Sum P(2) = 1.2e-67
Identities = 51/95 (53%), Positives = 65/95 (68%)
Query: 1067 KIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKD 1126
K++KY ++ ++ YL V QRYKGLGEM+P QLWETTMNP R +LKV ++D
Sbjct: 542 KLEKYLYSDD-ELERYLNEIGREGVTIQRYKGLGEMDPEQLWETTMNPETRTILKVTLED 600
Query: 1127 AISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 1161
A AD+IF LMGD VE RR+FIE NA +N+DI
Sbjct: 601 AAKADEIFTILMGDKVEPRREFIEKNAKLVRNLDI 635
Score = 68 (29.0 bits), Expect = 4.0e-104, Sum P(2) = 4.0e-104
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 492 RYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIE 538
+YG + +++K + G+ P IG TN++G +H V E + ++I+
Sbjct: 9 KYGAEEIQVLKGLEGVRKRPAMYIGSTNEKG--LHHLVYEVVDNSID 53
>UNIPROTKB|A9WGP2 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:324602
"Chloroflexus aurantiacus J-10-fl" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 EMBL:CP000909 GenomeReviews:CP000909_GR
GO:GO:0009295 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
OMA:IFETTEF ProtClustDB:PRK05644 HOGENOM:HOG000075154
RefSeq:YP_001636597.1 ProteinModelPortal:A9WGP2 STRING:A9WGP2
GeneID:5827483 KEGG:cau:Caur_3009 PATRIC:21417339
BioCyc:CAUR324602:GIXU-3058-MONOMER Uniprot:A9WGP2
Length = 636
Score = 848 (303.6 bits), Expect = 4.6e-103, Sum P(2) = 4.6e-103
Identities = 169/417 (40%), Positives = 245/417 (58%)
Query: 506 GISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDE 565
G+ V+ + + T++ GT F D I ++++++ L +R RE+S+LN G+ +DE
Sbjct: 151 GVPVTDVIDLEPTDRHGTTTRFLPDTSIIQTLDYNFDTLAQRFREMSYLNKGLRFKFVDE 210
Query: 566 RXXXXXXXXXXXXTSGFVSYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNNSYN 625
R +V ++NK K V+H F +V++Q+ +S++
Sbjct: 211 RTNRELNFYFEGGIVSYVRHLNKEKTVLHRQPFYVERIVDDVMV-----EVALQYTDSFD 265
Query: 626 -ENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCV 684
+N+ F NNI DGG+HL+G R+ +TR IN Y LK ++ + G+D+REGLT V
Sbjct: 266 TDNVYTFANNINNADGGSHLSGFRTALTRVINNYARAKGLLKDNESNLTGDDVREGLTAV 325
Query: 685 LSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXX 744
+S+K+ DP+F+SQTK KLVS E V + +L ENP E++ I
Sbjct: 326 ISVKLKDPQFSSQTKEKLVSPEAASAVATVFSDAFSAWLDENPTEARRIIEKAISAARTR 385
Query: 745 XXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQA 804
T +K+ ++ L KLADC + NP CELYIVEGDSAGG+ KQGRDRRFQA
Sbjct: 386 LAVQKVRE-TARKSAMEGFSLPGKLADCSDPNPARCELYIVEGDSAGGTAKQGRDRRFQA 444
Query: 805 VLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADID 864
+LPLRGK+LN+EK+R +++ LS D+F+L KLRYHRI +MTDAD+D
Sbjct: 445 ILPLRGKILNVEKSRLDRM-LSNAEVRALITAIGTSIGDQFDLSKLRYHRIFLMTDADVD 503
Query: 865 GAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKI 921
G+HIR LLLTFF+R M LI G+++IAQPPLY+IK+G + Y D E + Y+ K+
Sbjct: 504 GSHIRTLLLTFFFRHMRPLITNGHLFIAQPPLYRIKHGREQVYTYSDAERDAYLSKL 560
Score = 645 (232.1 bits), Expect = 2.5e-80, Sum P(2) = 2.5e-80
Identities = 142/389 (36%), Positives = 207/389 (53%)
Query: 345 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVT 404
++Y S IQ+LEG+EAVRKRP MYIG T D GLH V E++DN++DE +AG T ++VT
Sbjct: 7 TTYDESQIQVLEGMEAVRKRPGMYIGPT-DINGLHTMVREVVDNSVDEVMAGRATSVSVT 65
Query: 405 IYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGI 464
I+ G G S +VMT LHAGGKF YK+S GLHG+
Sbjct: 66 IHRDGSVTVSDDGSGIPVGIHPKEGI----STLTLVMTRLHAGGKFGSGGYKVSSGLHGV 121
Query: 465 GLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTK 524
G+S VN LS ++++ + RN + +Y E+R GV +I + P T++ GT
Sbjct: 122 GVSAVNALSAYMRVDVYRNGRHYYQEYRAGVPVTDVI------DLEP------TDRHGTT 169
Query: 525 IHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSGFVS 584
F D I ++++++ L +R RE+S+LN G+ +DER +V
Sbjct: 170 TRFLPDTSIIQTLDYNFDTLAQRFREMSYLNKGLRFKFVDERTNRELNFYFEGGIVSYVR 229
Query: 585 YINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNNSYNENILCFTNNILQVDGGTHL 644
++NK K V+H F ++ +N+ F NNI DGG+HL
Sbjct: 230 HLNKEKTVLHRQPFYVERIVDDVMVEVAL----QYTDSFDTDNVYTFANNINNADGGSHL 285
Query: 645 TGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVS 704
+G R+ +TR IN Y LK ++ + G+D+REGLT V+S+K+ DP+F+SQTK KLVS
Sbjct: 286 SGFRTALTRVINNYARAKGLLKDNESNLTGDDVREGLTAVISVKLKDPQFSSQTKEKLVS 345
Query: 705 SEVRKPVEEIIIKTLFDFLQENPGESKLI 733
E V + +L ENP E++ I
Sbjct: 346 PEAASAVATVFSDAFSAWLDENPTEARRI 374
Score = 193 (73.0 bits), Expect = 4.6e-103, Sum P(2) = 4.6e-103
Identities = 39/68 (57%), Positives = 48/68 (70%)
Query: 1094 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNA 1153
QRYKGLGEMN QLWETTMNP R +L+V ++DA AD+ F LMGD V RR+FI+ +A
Sbjct: 569 QRYKGLGEMNAEQLWETTMNPQNRVILQVTLEDAARADETFTMLMGDLVPPRRRFIQTHA 628
Query: 1154 LHAKNIDI 1161
+DI
Sbjct: 629 NEVVELDI 636
>UNIPROTKB|Q8TQG0 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:188937
"Methanosarcina acetivorans C2A" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 EMBL:AE010299
GenomeReviews:AE010299_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK05644
RefSeq:NP_616517.1 HSSP:P06982 ProteinModelPortal:Q8TQG0
GeneID:1473472 KEGG:mac:MA1584 BioCyc:MACE188937:GI2O-1646-MONOMER
Uniprot:Q8TQG0
Length = 634
Score = 1019 (363.8 bits), Expect = 7.7e-103, P = 7.7e-103
Identities = 223/566 (39%), Positives = 328/566 (57%)
Query: 434 RSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRY 493
+SA E+VMT LHAGGKF+KN+YK+SGGLHG+G+S VN LS +L + + R+ K ++ RY
Sbjct: 89 KSALEVVMTVLHAGGKFDKNTYKVSGGLHGVGVSVVNALSEWLNVEVERDGKKYFQ--RY 146
Query: 494 GVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSF 553
I G + ++ G + GTK F D +IF +F Y+IL R+REL+F
Sbjct: 147 ----------IRGKPEAEVQETGTSEITGTKTTFKPDARIFETTDFQYDILSNRLRELAF 196
Query: 554 LNNGVCITLIDERXXXXXXXXXXXXTS--GFVSYINKSKLVVH--PTIFQAXXXXXXXXX 609
LN G+ I L D R FV Y+NK K +H P F+
Sbjct: 197 LNRGLTINLKDLRSPEGQAETFIYSGGIVEFVEYLNKKKQPLHEKPIYFERQRDDMVV-- 254
Query: 610 XXXXXDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSK 669
+++MQ+ NSY EN+ F NNI +GGTH+ G ++ +TR N YI+ N+ L K
Sbjct: 255 -----EIAMQYTNSYTENVYSFANNINTHEGGTHIIGFKTALTRVANDYIKANK-LSKED 308
Query: 670 IEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGE 729
++ G+D+REGLT ++S+K+ +P+F QTK +L +SEV+ V+ ++ L ++ +ENP
Sbjct: 309 AKLTGDDVREGLTAIISVKLMEPQFEGQTKTRLGNSEVKGIVDSLVTDGLAEYFEENPKV 368
Query: 730 SKLICXXXXXXXXXXXXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDS 789
+ +I LTR+K+ ++ L KLADC EK+P +CE+YIVEG+S
Sbjct: 369 ANVILEKALLAQKAREAAKKARELTRRKSALEVSTLPGKLADCSEKDPSVCEIYIVEGNS 428
Query: 790 AGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEK 849
AGGS KQGRDR FQA+LPLRGK+LN+EK+R KI+ + + +D F LE
Sbjct: 429 AGGSAKQGRDRGFQAILPLRGKILNVEKSRLAKILKNNEVVSLITALGTGVSED-FALES 487
Query: 850 LRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLR 909
RYH++I+MTDAD+DGAHIR LLLT F+R M LI+ GY+YIAQPPLY+IK G +E Y+
Sbjct: 488 ARYHKVILMTDADVDGAHIRTLLLTLFFRYMRPLIDAGYVYIAQPPLYRIKKGKSEYYIH 547
Query: 910 DDIEEERYMLKIAFKNVKLISIEN-GDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISIL 968
D E E ++ K + + + G++ E + ++ ++T+ V + I
Sbjct: 548 SDRELEVKKKELGEKGLAIQRYKGLGEMNPEQLWETTMNPESRTLLQVTLEDALRADEIF 607
Query: 969 SAIMSDVILNLDTREN-AEQFAKKII 993
+M D + + R N E AK+++
Sbjct: 608 RVLMGDEV---EPRRNFIETHAKEVV 630
Score = 492 (178.3 bits), Expect = 1.3e-66, Sum P(2) = 1.3e-66
Identities = 113/257 (43%), Positives = 149/257 (57%)
Query: 347 YSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIY 406
Y AS IQ+LEGLEAVRKRP MYIG T D GLHH V+E++DN+IDE+LAG+CT+++VTI
Sbjct: 7 YDASRIQVLEGLEAVRKRPSMYIGST-DSRGLHHLVYEVVDNSIDEALAGFCTRVDVTIN 65
Query: 407 XXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGL 466
GRG +SA E+VMT LHAGGKF+KN+YK+SGGLHG+G+
Sbjct: 66 PDGSVTVLDNGRGIPIDPHPVHK----KSALEVVMTVLHAGGKFDKNTYKVSGGLHGVGV 121
Query: 467 SCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIH 526
S VN LS +L + + R+ K ++ RY I G + ++ G + GTK
Sbjct: 122 SVVNALSEWLNVEVERDGKKYFQ--RY----------IRGKPEAEVQETGTSEITGTKTT 169
Query: 527 FWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTS--GFVS 584
F D +IF +F Y+IL R+REL+FLN G+ I L D R FV
Sbjct: 170 FKPDARIFETTDFQYDILSNRLRELAFLNRGLTINLKDLRSPEGQAETFIYSGGIVEFVE 229
Query: 585 YINKSKLVVH--PTIFQ 599
Y+NK K +H P F+
Sbjct: 230 YLNKKKQPLHEKPIYFE 246
Score = 223 (83.6 bits), Expect = 1.3e-66, Sum P(2) = 1.3e-66
Identities = 44/68 (64%), Positives = 52/68 (76%)
Query: 1094 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNA 1153
QRYKGLGEMNP QLWETTMNP R LL+V ++DA+ AD+IF LMGD VE RR FIE +A
Sbjct: 567 QRYKGLGEMNPEQLWETTMNPESRTLLQVTLEDALRADEIFRVLMGDEVEPRRNFIETHA 626
Query: 1154 LHAKNIDI 1161
++DI
Sbjct: 627 KEVVDLDI 634
Score = 43 (20.2 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 28 ILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAAR 75
ILP+ IL + S L + EV ++ TA+G G S + +AR
Sbjct: 444 ILPLRGKILNVEKSRLAKILKNN-EV-VSLITALGTGVSEDFALESAR 489
>UNIPROTKB|A8IIG8 [details] [associations]
symbol:TOP3 "DNA gyrase subunit B-like protein"
species:3055 "Chlamydomonas reinhardtii" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
ProtClustDB:CLSN2689450 Gene3D:3.40.50.670 EMBL:DS496117
RefSeq:XP_001690535.1 UniGene:Cre.5744 ProteinModelPortal:A8IIG8
STRING:A8IIG8 EnsemblPlants:EDP05794 GeneID:5716144
KEGG:cre:CHLREDRAFT_114600 BioCyc:CHLAMY:CHLREDRAFT_114600-MONOMER
Uniprot:A8IIG8
Length = 649
Score = 862 (308.5 bits), Expect = 4.1e-100, Sum P(2) = 4.1e-100
Identities = 204/574 (35%), Positives = 305/574 (53%)
Query: 353 QILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTI-YXXXXX 411
Q+LEGLE VRKRP MYIG T GLHH ++E++DNA+DE AG+ + + V +
Sbjct: 1 QVLEGLEPVRKRPGMYIGGTGSD-GLHHLIWEVVDNAVDEVQAGHASAVEVDVDLSSGWV 59
Query: 412 XXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFN-KNS-YKISGGLHGIGLSCV 469
GRG +SA E V+T LHAGGKF NS YK+SGGLHG+G+S V
Sbjct: 60 SVVDNGRGIPVDVHPVTG----KSALETVLTVLHAGGKFGGDNSGYKVSGGLHGVGISVV 115
Query: 470 NGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWV 529
N LS L++T+ R Y + RY + ++ + + P + + GT++ F
Sbjct: 116 NALSSELEVTVWRAGS-RYSQ-RYS--RGAPLEELRVQLLPPGS--EEAGRSGTQVRFLY 169
Query: 530 DEKIFS-NIEFHYEILKKRIRELSFLNNGVCITLID-ERXXXXXXXXXXXXTSGFVSYIN 587
D IF+ ++ + +++ R+ EL+FLN I R + G ++
Sbjct: 170 DASIFAKDVAYSADVIATRLHELAFLNARATIRFRALRRGKPEGQWQVFQYSGGLREFVG 229
Query: 588 KSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWN-NSYNENILCFTNNILQVDGGTHLTG 646
+ P + +A + ++QW +S+ E + F N+I VDGGTH+ G
Sbjct: 230 CLQAAYTP-LHEALVVTRADGGSGVVVEAALQWAADSFKEEVRGFANSIHTVDGGTHMEG 288
Query: 647 LRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSE 706
LR+G+TRA+ + + + +K S + GE +REGL V+S+K+P+P+F QTK +L + E
Sbjct: 289 LRAGLTRAVTQLGRKAKQIKDSDPPLSGEHVREGLGAVVSVKVPNPEFEGQTKTRLGNPE 348
Query: 707 VRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXXXXXXLTRKKNLI--DDIE 764
VRK VE + + + ++L+ +P +C L R+K +
Sbjct: 349 VRKIVENAVYEAVGEWLEAHPAALAALCAKALTSARAAEAARKARELVRRKTSLFTGRST 408
Query: 765 LSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKII 824
L KLADC N E E+YIVEGDSAGGS KQ RDRRFQA+LPL+GK+LN+E+ +
Sbjct: 409 LPGKLADCTSTNREETEIYIVEGDSAGGSAKQARDRRFQAILPLKGKILNVERLTDANEL 468
Query: 825 LSEQXXXXXXXXXXXXE----QDEFNLEKLR-YHRIIIMTDADIDGAHIRALLLTFFYRK 879
+ + + + KL Y +I+++TDAD+DGAHIR LLLTF +R
Sbjct: 469 MYKNTEISNLIALGYERTVGVRSRCHAFKLLLYGKIVVLTDADVDGAHIRTLLLTFLFRH 528
Query: 880 MPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIE 913
P+L G +Y+A PPLYK++ G + + D E
Sbjct: 529 RPQLFAAGRVYVAVPPLYKVERGKSVWWAHSDAE 562
Score = 151 (58.2 bits), Expect = 4.1e-100, Sum P(2) = 4.1e-100
Identities = 29/57 (50%), Positives = 38/57 (66%)
Query: 1094 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIE 1150
QR+KGLGEM P QLW+TT+NP R L ++ ++D AD + LMG VE R+ IE
Sbjct: 580 QRFKGLGEMMPQQLWDTTLNPESRLLRRLTVRDVSEADSMLTMLMGTKVEPRKALIE 636
>UNIPROTKB|Q89M38 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:224911
"Bradyrhizobium japonicum USDA 110" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR005737 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265
EMBL:BA000040 GenomeReviews:BA000040_GR GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 OMA:GFIQSYC TIGRFAMs:TIGR01055 HSSP:P06982
RefSeq:NP_770995.1 ProteinModelPortal:Q89M38 GeneID:1052126
KEGG:bja:bll4355 PATRIC:21192268
BioCyc:BJAP224911:GJEJ-4381-MONOMER Uniprot:Q89M38
Length = 681
Score = 862 (308.5 bits), Expect = 8.8e-96, Sum P(2) = 8.8e-96
Identities = 210/596 (35%), Positives = 317/596 (53%)
Query: 344 ESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINV 403
E+ Y+A+ I++LEGLE VR+RP MYIG T D LHH E++DN++DE+LAG+ T I V
Sbjct: 35 EADYTAADIEVLEGLEPVRRRPGMYIGGT-DEKALHHLFAEVIDNSMDEALAGHATFIGV 93
Query: 404 TIYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHG 463
+ GRG +SA E++M LH+GGKF+ Y+ SGGLHG
Sbjct: 94 ELSADGFLTVTDNGRGIPIDPHPKFPK---KSALEVIMCTLHSGGKFDSKVYETSGGLHG 150
Query: 464 IGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGT 523
+G+S VN LS L++ + R++K++ M F G + ++ + + I+ N++GT
Sbjct: 151 VGISVVNALSSLLEVEVARSQKLYRMTFERGHPKGKL-EDLGKIN----------NRRGT 199
Query: 524 KIHFWVDEKIF-SNIEFHYEILKKRIRELSFLNNGV-----CITLIDERXXXXXXXXXXX 577
++ F D IF + F + L K R ++L GV C + +
Sbjct: 200 RVRFKPDTDIFGAKAAFKPQRLFKMTRSKAYLFGGVEIRWNCAPELLKGIDDVPAEATFH 259
Query: 578 XTSGFVSYINKS---KLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNNSYNENILCFTNN 634
G Y+ + +VHP IF + ++ W + + +TN
Sbjct: 260 FPGGLKDYLAAAIHADTLVHPDIFSGKSGRNGAHGAC---EWAVAWTADADGFLSSYTNT 316
Query: 635 ILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKF 694
+ DGGTH +GLRS + R + + E K++ I ED+ G +LS+ + +P+F
Sbjct: 317 VPTPDGGTHESGLRSALLRGLKDHAERVGQGKRAS-SITSEDVMVGAAVMLSVFVREPEF 375
Query: 695 NSQTKNKLVSSEVRKPVEEIIIKTLFD-FLQENPGESKLICXXXXXXXXXXXXXXXXXXL 753
QTK++L ++E ++ VE+ + K FD +L NP ++ +
Sbjct: 376 QGQTKDRLATAEAQRIVEQAM-KDPFDHWLSGNPNQANKLLDFVIDRAEERLRRRQEKE- 433
Query: 754 TRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVL 813
T +K + L KLADC + E EL+IVEGDSAGGS KQ RDR+ QAVLPLRGK+L
Sbjct: 434 TARKTAGKKLRLPGKLADCSDAGTEGSELFIVEGDSAGGSAKQARDRKTQAVLPLRGKIL 493
Query: 814 NIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLL 873
N+ A +K+ + Q ++ E LRY RIIIMTDAD+DGAHI +LL+
Sbjct: 494 NVASAGKDKLTANAQLSDLVQAIGCGTLA-QYREEDLRYQRIIIMTDADVDGAHIASLLI 552
Query: 874 TFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFK-NVKL 928
TFFYR+MP+LI+ G++++A PPLYK+ +G+ Y RDD +E ++K F N K+
Sbjct: 553 TFFYRQMPRLIDEGHLFLAVPPLYKLTHGSKSVYARDDAHKEA-LIKSEFNANAKV 607
Score = 110 (43.8 bits), Expect = 8.8e-96, Sum P(2) = 8.8e-96
Identities = 33/71 (46%), Positives = 41/71 (57%)
Query: 1095 RYKGLGEMNPGQLWETTMNPMIRCLLKVKI----KDAISADKIFMTLMGDNVELRRKFIE 1150
R+KGLGEM P QL ETTM+P R +LKV + +D +AD + LMG E R FI
Sbjct: 611 RFKGLGEMMPAQLKETTMDPAKRTMLKVVLLADDRDT-TADSV-ERLMGTKAEARFAFIS 668
Query: 1151 LNALHAKNIDI 1161
A A N D+
Sbjct: 669 DKAEFA-NEDL 678
>GENEDB_PFALCIPARUM|PFL1915w [details] [associations]
symbol:PFL1915w "dna gyrase subunit b, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=IDA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 EMBL:AE014188 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0020011 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 KO:K02470 Gene3D:3.40.50.670 HOGENOM:HOG000075156
GenomeReviews:AE014188_GR HSSP:P06982 RefSeq:XP_001350789.1
ProteinModelPortal:Q8I528 IntAct:Q8I528 MINT:MINT-1670662
PRIDE:Q8I528 EnsemblProtists:PFL1915w:mRNA GeneID:811435
KEGG:pfa:PFL1915w EuPathDB:PlasmoDB:PF3D7_1239500 OMA:YDERSEN
ProtClustDB:PTZ00109 Uniprot:Q8I528
Length = 1006
Score = 392 (143.0 bits), Expect = 1.3e-90, Sum P(5) = 1.3e-90
Identities = 85/212 (40%), Positives = 119/212 (56%)
Query: 615 DVSMQW-NNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEII 673
D+ M+W +N YNENI+ F NN+ DGGTH+ L+ ++R +N I++NE +K + I
Sbjct: 500 DLRMKWLSNQYNENIISFVNNVNTTDGGTHVDALKYAVSRCVNYNIKKNEMIKNF-VNIP 558
Query: 674 GEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLI 733
GE IREGLT +LS+K+ +P+F QTK KL S ++ +E +I + L + P I
Sbjct: 559 GEYIREGLTAILSVKMNNPEFEGQTKTKLGSHHLKSILESVIFEKLSEIFDFEPNLLSSI 618
Query: 734 CXXXXXXXXXXXXXXXXXXLTRKKN-LIDDIELSTKLADCQEKNPELCELYIVEGDSAGG 792
L R KN L KL DC + E++IVEGDSA G
Sbjct: 619 YFKALQAKLSDEEAKAARDLIRSKNNQYSSTILPGKLVDCISDDISRNEIFIVEGDSAAG 678
Query: 793 SVKQGRDRRFQAVLPLRGKVLNIEKARFEKII 824
S KQ R+R QA+LPL+GK+LN+EK + K I
Sbjct: 679 SAKQARNREIQAILPLKGKILNVEKIKNNKRI 710
Score = 208 (78.3 bits), Expect = 1.3e-90, Sum P(5) = 1.3e-90
Identities = 69/203 (33%), Positives = 94/203 (46%)
Query: 253 SNKYEKS----FLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASE 308
+N Y+K+ F + K + L + +NDK ++K YL NR+K
Sbjct: 31 ANIYKKNNINIFNCMKRKYDKKLSSSVVNTNDKALYESSILKYYYLLDKYKKPNRKKI-- 88
Query: 309 ELEINYNGKDKNF-IKFLIKIMLLKNKNSYDIQDTQESSYSASSIQILEGLEAVRKRPEM 367
Y F ++ K L++ N +I +Y A I ILEGLEAVRKRP M
Sbjct: 89 ---YGYISNVSRFPLEEERKRKKLEHMNKRNIYPCY--NYDAKDIVILEGLEAVRKRPGM 143
Query: 368 YIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYXXXXXXXXXXGRGXXXXXXXX 427
YIG+T D GLH +FEI+DN++DE C I V I+ GRG
Sbjct: 144 YIGNT-DVKGLHQILFEIIDNSVDEYNNFECNTIKVVIHKDDSVTIEDNGRGIPCDVHEK 202
Query: 428 XXXXXXRSAAEIVMTELHAGGKF 450
+SA E V+T LH+G KF
Sbjct: 203 TK----KSALETVLTVLHSGAKF 221
Score = 189 (71.6 bits), Expect = 1.3e-90, Sum P(5) = 1.3e-90
Identities = 45/99 (45%), Positives = 58/99 (58%)
Query: 850 LRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLR 909
LRY ++IIMTDAD+DG HIR LLLTF YR ++IE G +Y+A PPLYKI Y
Sbjct: 782 LRYGKVIIMTDADVDGEHIRILLLTFLYRFQKEIIENGNVYVACPPLYKITYNKFFDNSI 841
Query: 910 DDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDK 948
DI +++ + K K I D + N KL+DK
Sbjct: 842 KDIVTKQF--NVTTKQSKFIIHTYSDQ-ELNNLLKLLDK 877
Score = 183 (69.5 bits), Expect = 1.3e-90, Sum P(5) = 1.3e-90
Identities = 44/119 (36%), Positives = 69/119 (57%)
Query: 449 KFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGIS 508
K + YK S GLHG+GLS N LS F+++ + RN KI+ +E G ++ K + I+
Sbjct: 269 KESAQKYKYSSGLHGVGLSVANALSSFMKVKVFRNNKIYSIELEKG----KVTKELT-IT 323
Query: 509 VSPIKIIGDTNKQGTKIHFWVDEKIF-SNIEFHYEILKKRIRELSFLNNGVCITLIDER 566
PI NK+GT+IH+ D IF S+ + + +++K RI +L++LN + DER
Sbjct: 324 NCPI------NKRGTQIHYKPDSSIFKSSTKHNSDLIKNRIHQLAYLNEKLTFYFYDER 376
Score = 162 (62.1 bits), Expect = 1.3e-90, Sum P(5) = 1.3e-90
Identities = 33/69 (47%), Positives = 48/69 (69%)
Query: 1081 NYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGD 1140
N L N ++ I QR+KGLGEM QLW TTM+P +R L++V + DAI A+ + +LMG+
Sbjct: 930 NVLFNFSKKYEI-QRFKGLGEMMADQLWNTTMDPTVRKLIRVTVNDAIRANDLIFSLMGE 988
Query: 1141 NVELRRKFI 1149
+ +LR+ FI
Sbjct: 989 DSKLRKNFI 997
Score = 65 (27.9 bits), Expect = 9.7e-24, Sum P(3) = 9.7e-24
Identities = 73/337 (21%), Positives = 130/337 (38%)
Query: 78 IDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSK--YDFEFTLSQ 135
+ + +L KV ++ NK I+ K K T + L PI ++ Y + ++ +
Sbjct: 286 LSVANALSSFMKVKVFRNNKIYSIELEKGKVTKE-LTITNCPINKRGTQIHYKPDSSIFK 344
Query: 136 KTLKCILNMVYFSIAQQDIRYYLNGLLLSF------QKKNIIAVSSDGHRLTYYQVNIDK 189
+ K +++ I Q YLN L + + KN I +S G++ N K
Sbjct: 345 SSTKHNSDLIKNRIHQLA---YLNEKLTFYFYDERSENKNSIYISK-GNKSNEIIKN-KK 399
Query: 190 KFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQXXXXXXXXXXXXXXXDGKFLD-Y 248
K +S + K + N N ++ +SN D LD Y
Sbjct: 400 KNTSIDNENEDNKN--NTSNYVSN--NTLKDDVSNENENMSDNLVNKNIEITDYNNLDFY 455
Query: 249 KY-VISNKYE-KSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y +I ++Y ++ N K +L + NDK+ + K Y+ + + + +
Sbjct: 456 NYEIIKHEYGLNEYITNITKNKTNLFK----DNDKIISISCYHKNIYIDLRMKWLSNQYN 511
Query: 307 SEELEI--NYNGKDKNFIKFLIKIMLLKNKNSYDIQDTQ--ESSYSASSIQILEGLEAV- 361
+ N N D +K + + N Y+I+ + ++ + I EGL A+
Sbjct: 512 ENIISFVNNVNTTDGGTHVDALKYAVSRCVN-YNIKKNEMIKNFVNIPGEYIREGLTAIL 570
Query: 362 ---RKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLA 395
PE + G T G HH IL++ I E L+
Sbjct: 571 SVKMNNPE-FEGQTKTKLGSHHLK-SILESVIFEKLS 605
Score = 41 (19.5 bits), Expect = 1.4e-58, Sum P(4) = 1.4e-58
Identities = 22/95 (23%), Positives = 43/95 (45%)
Query: 449 KFNK-NSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGI 507
K+ K N KI G + + + + +L + NK+ Y + Y I++ + +
Sbjct: 79 KYKKPNRKKIYGYISNVSRFPLEEERKRKKLE-HMNKRNIYPCYNYDAKDIVILEGLEAV 137
Query: 508 SVSPIKIIGDTNKQGT-KIHFWV-DEKI--FSNIE 538
P IG+T+ +G +I F + D + ++N E
Sbjct: 138 RKRPGMYIGNTDVKGLHQILFEIIDNSVDEYNNFE 172
Score = 41 (19.5 bits), Expect = 1.8e-20, Sum P(4) = 1.8e-20
Identities = 18/89 (20%), Positives = 42/89 (47%)
Query: 264 RNKLLRSLQRIS--IISNDKLKGVRLVIKPNYLKITVSSSNREKASEELEINYNGKDKNF 321
RN+ ++++ + I++ +K+K + + + + LK +++ L +NY+ K+
Sbjct: 684 RNREIQAILPLKGKILNVEKIKNNKRIFENSELKSLITALG-------LNVNYDNKNLKN 736
Query: 322 IKFLIKIMLLKNKNSYDIQDTQESSYSAS 350
L K KNS D + S + ++
Sbjct: 737 NNILSNNK--KGKNSKKKSDLKNSRFEST 763
Score = 37 (18.1 bits), Expect = 3.8e-58, Sum P(4) = 3.8e-58
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 41 SEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLPETEKVTI-YIEN 96
+EK++F D + + GN S II +K I + + T Y+ N
Sbjct: 365 NEKLTFYFYDERSENKNSIYISKGNKSNEIIKNKKKNTSIDNENEDNKNNTSNYVSN 421
>UNIPROTKB|Q8I528 [details] [associations]
symbol:GyrB "Term=DNA gyrase subunit B;evidence=inferred
from direct assay" species:36329 "Plasmodium falciparum 3D7"
[GO:0020011 "apicoplast" evidence=IDA] InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:AE014188
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0020011
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 KO:K02470
Gene3D:3.40.50.670 HOGENOM:HOG000075156 GenomeReviews:AE014188_GR
HSSP:P06982 RefSeq:XP_001350789.1 ProteinModelPortal:Q8I528
IntAct:Q8I528 MINT:MINT-1670662 PRIDE:Q8I528
EnsemblProtists:PFL1915w:mRNA GeneID:811435 KEGG:pfa:PFL1915w
EuPathDB:PlasmoDB:PF3D7_1239500 OMA:YDERSEN ProtClustDB:PTZ00109
Uniprot:Q8I528
Length = 1006
Score = 392 (143.0 bits), Expect = 1.3e-90, Sum P(5) = 1.3e-90
Identities = 85/212 (40%), Positives = 119/212 (56%)
Query: 615 DVSMQW-NNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEII 673
D+ M+W +N YNENI+ F NN+ DGGTH+ L+ ++R +N I++NE +K + I
Sbjct: 500 DLRMKWLSNQYNENIISFVNNVNTTDGGTHVDALKYAVSRCVNYNIKKNEMIKNF-VNIP 558
Query: 674 GEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLI 733
GE IREGLT +LS+K+ +P+F QTK KL S ++ +E +I + L + P I
Sbjct: 559 GEYIREGLTAILSVKMNNPEFEGQTKTKLGSHHLKSILESVIFEKLSEIFDFEPNLLSSI 618
Query: 734 CXXXXXXXXXXXXXXXXXXLTRKKN-LIDDIELSTKLADCQEKNPELCELYIVEGDSAGG 792
L R KN L KL DC + E++IVEGDSA G
Sbjct: 619 YFKALQAKLSDEEAKAARDLIRSKNNQYSSTILPGKLVDCISDDISRNEIFIVEGDSAAG 678
Query: 793 SVKQGRDRRFQAVLPLRGKVLNIEKARFEKII 824
S KQ R+R QA+LPL+GK+LN+EK + K I
Sbjct: 679 SAKQARNREIQAILPLKGKILNVEKIKNNKRI 710
Score = 208 (78.3 bits), Expect = 1.3e-90, Sum P(5) = 1.3e-90
Identities = 69/203 (33%), Positives = 94/203 (46%)
Query: 253 SNKYEKS----FLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASE 308
+N Y+K+ F + K + L + +NDK ++K YL NR+K
Sbjct: 31 ANIYKKNNINIFNCMKRKYDKKLSSSVVNTNDKALYESSILKYYYLLDKYKKPNRKKI-- 88
Query: 309 ELEINYNGKDKNF-IKFLIKIMLLKNKNSYDIQDTQESSYSASSIQILEGLEAVRKRPEM 367
Y F ++ K L++ N +I +Y A I ILEGLEAVRKRP M
Sbjct: 89 ---YGYISNVSRFPLEEERKRKKLEHMNKRNIYPCY--NYDAKDIVILEGLEAVRKRPGM 143
Query: 368 YIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYXXXXXXXXXXGRGXXXXXXXX 427
YIG+T D GLH +FEI+DN++DE C I V I+ GRG
Sbjct: 144 YIGNT-DVKGLHQILFEIIDNSVDEYNNFECNTIKVVIHKDDSVTIEDNGRGIPCDVHEK 202
Query: 428 XXXXXXRSAAEIVMTELHAGGKF 450
+SA E V+T LH+G KF
Sbjct: 203 TK----KSALETVLTVLHSGAKF 221
Score = 189 (71.6 bits), Expect = 1.3e-90, Sum P(5) = 1.3e-90
Identities = 45/99 (45%), Positives = 58/99 (58%)
Query: 850 LRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLR 909
LRY ++IIMTDAD+DG HIR LLLTF YR ++IE G +Y+A PPLYKI Y
Sbjct: 782 LRYGKVIIMTDADVDGEHIRILLLTFLYRFQKEIIENGNVYVACPPLYKITYNKFFDNSI 841
Query: 910 DDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDK 948
DI +++ + K K I D + N KL+DK
Sbjct: 842 KDIVTKQF--NVTTKQSKFIIHTYSDQ-ELNNLLKLLDK 877
Score = 183 (69.5 bits), Expect = 1.3e-90, Sum P(5) = 1.3e-90
Identities = 44/119 (36%), Positives = 69/119 (57%)
Query: 449 KFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGIS 508
K + YK S GLHG+GLS N LS F+++ + RN KI+ +E G ++ K + I+
Sbjct: 269 KESAQKYKYSSGLHGVGLSVANALSSFMKVKVFRNNKIYSIELEKG----KVTKELT-IT 323
Query: 509 VSPIKIIGDTNKQGTKIHFWVDEKIF-SNIEFHYEILKKRIRELSFLNNGVCITLIDER 566
PI NK+GT+IH+ D IF S+ + + +++K RI +L++LN + DER
Sbjct: 324 NCPI------NKRGTQIHYKPDSSIFKSSTKHNSDLIKNRIHQLAYLNEKLTFYFYDER 376
Score = 162 (62.1 bits), Expect = 1.3e-90, Sum P(5) = 1.3e-90
Identities = 33/69 (47%), Positives = 48/69 (69%)
Query: 1081 NYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGD 1140
N L N ++ I QR+KGLGEM QLW TTM+P +R L++V + DAI A+ + +LMG+
Sbjct: 930 NVLFNFSKKYEI-QRFKGLGEMMADQLWNTTMDPTVRKLIRVTVNDAIRANDLIFSLMGE 988
Query: 1141 NVELRRKFI 1149
+ +LR+ FI
Sbjct: 989 DSKLRKNFI 997
Score = 65 (27.9 bits), Expect = 9.7e-24, Sum P(3) = 9.7e-24
Identities = 73/337 (21%), Positives = 130/337 (38%)
Query: 78 IDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSK--YDFEFTLSQ 135
+ + +L KV ++ NK I+ K K T + L PI ++ Y + ++ +
Sbjct: 286 LSVANALSSFMKVKVFRNNKIYSIELEKGKVTKE-LTITNCPINKRGTQIHYKPDSSIFK 344
Query: 136 KTLKCILNMVYFSIAQQDIRYYLNGLLLSF------QKKNIIAVSSDGHRLTYYQVNIDK 189
+ K +++ I Q YLN L + + KN I +S G++ N K
Sbjct: 345 SSTKHNSDLIKNRIHQLA---YLNEKLTFYFYDERSENKNSIYISK-GNKSNEIIKN-KK 399
Query: 190 KFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQXXXXXXXXXXXXXXXDGKFLD-Y 248
K +S + K + N N ++ +SN D LD Y
Sbjct: 400 KNTSIDNENEDNKN--NTSNYVSN--NTLKDDVSNENENMSDNLVNKNIEITDYNNLDFY 455
Query: 249 KY-VISNKYE-KSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
Y +I ++Y ++ N K +L + NDK+ + K Y+ + + + +
Sbjct: 456 NYEIIKHEYGLNEYITNITKNKTNLFK----DNDKIISISCYHKNIYIDLRMKWLSNQYN 511
Query: 307 SEELEI--NYNGKDKNFIKFLIKIMLLKNKNSYDIQDTQ--ESSYSASSIQILEGLEAV- 361
+ N N D +K + + N Y+I+ + ++ + I EGL A+
Sbjct: 512 ENIISFVNNVNTTDGGTHVDALKYAVSRCVN-YNIKKNEMIKNFVNIPGEYIREGLTAIL 570
Query: 362 ---RKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLA 395
PE + G T G HH IL++ I E L+
Sbjct: 571 SVKMNNPE-FEGQTKTKLGSHHLK-SILESVIFEKLS 605
Score = 41 (19.5 bits), Expect = 1.4e-58, Sum P(4) = 1.4e-58
Identities = 22/95 (23%), Positives = 43/95 (45%)
Query: 449 KFNK-NSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGI 507
K+ K N KI G + + + + +L + NK+ Y + Y I++ + +
Sbjct: 79 KYKKPNRKKIYGYISNVSRFPLEEERKRKKLE-HMNKRNIYPCYNYDAKDIVILEGLEAV 137
Query: 508 SVSPIKIIGDTNKQGT-KIHFWV-DEKI--FSNIE 538
P IG+T+ +G +I F + D + ++N E
Sbjct: 138 RKRPGMYIGNTDVKGLHQILFEIIDNSVDEYNNFE 172
Score = 41 (19.5 bits), Expect = 1.8e-20, Sum P(4) = 1.8e-20
Identities = 18/89 (20%), Positives = 42/89 (47%)
Query: 264 RNKLLRSLQRIS--IISNDKLKGVRLVIKPNYLKITVSSSNREKASEELEINYNGKDKNF 321
RN+ ++++ + I++ +K+K + + + + LK +++ L +NY+ K+
Sbjct: 684 RNREIQAILPLKGKILNVEKIKNNKRIFENSELKSLITALG-------LNVNYDNKNLKN 736
Query: 322 IKFLIKIMLLKNKNSYDIQDTQESSYSAS 350
L K KNS D + S + ++
Sbjct: 737 NNILSNNK--KGKNSKKKSDLKNSRFEST 763
Score = 37 (18.1 bits), Expect = 3.8e-58, Sum P(4) = 3.8e-58
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 41 SEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLPETEKVTI-YIEN 96
+EK++F D + + GN S II +K I + + T Y+ N
Sbjct: 365 NEKLTFYFYDERSENKNSIYISKGNKSNEIIKNKKKNTSIDNENEDNKNNTSNYVSN 421
>UNIPROTKB|Q7RHG3 [details] [associations]
symbol:PY04024 "DNA topoisomerase II, putative"
species:73239 "Plasmodium yoelii yoelii" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
Gene3D:3.40.50.670 HSSP:P06982 EMBL:AABL01001206 RefSeq:XP_724272.1
ProteinModelPortal:Q7RHG3 STRING:Q7RHG3 GeneID:3789597
KEGG:pyo:PY04024 EuPathDB:PlasmoDB:PY04024 Uniprot:Q7RHG3
Length = 930
Score = 520 (188.1 bits), Expect = 4.3e-90, Sum P(4) = 4.3e-90
Identities = 143/403 (35%), Positives = 205/403 (50%)
Query: 449 KFNKN--SYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTING 506
K N+N YK S GLHG+GLS N LS F+++ + R+ KI+ +E G +++K +N
Sbjct: 264 KTNENLQKYKYSSGLHGVGLSVSNALSTFMKVNVFRDNKIYNIELEKG----KVVKELN- 318
Query: 507 ISVSPIKIIGDTNKQGTKIHFWVDEKIF-SNIEFHYEILKKRIRELSFLNNGVCITLIDE 565
+ PIK K+GT+IH+ D IF +NI+ + E +K R+ +L++LN+ + DE
Sbjct: 319 VQDCPIK------KRGTQIHYKPDNTIFKTNIKHNSEFIKNRLHQLAYLNDKLTFYFYDE 372
Query: 566 RXXXXXXXXXXXXTSGFVSY---------INK---------SKLVVHPT-IFQAXXXXXX 606
R SY I K KL + T IF+
Sbjct: 373 RNSNKGNSDKVSENVENNSYTKLDNYEYEIIKHEGGLDEYMEKLTKNKTNIFKTNNKVIS 432
Query: 607 XX--XXXXXXDVSMQW-NNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENE 663
D+ ++W N YNENIL F NN+ +DGGTH+ ++ I+R+IN +++NE
Sbjct: 433 ISCFQKNIHVDLKLKWVTNQYNENILSFVNNVNTIDGGTHVDAMKYAISRSINYNVKKNE 492
Query: 664 FLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFL 723
+K + I GE IREGLT +LSIK+ +P+F QTK KL S ++ +E II + L +
Sbjct: 493 TIKNF-VNIPGEYIREGLTAILSIKMNNPEFEGQTKTKLGSYYLKPILESIIFEKLSEIF 551
Query: 724 QENPGESKLICXXXXXXXXXXXXXXXXXXLTRKKN--LIDDIELSTKLADCQEKNPELCE 781
P I L R KN I L KL DC + E
Sbjct: 552 DFEPNLLNTIYLKALQAKKSDEEAKAARDLIRSKNNQYYSTI-LPGKLVDCISDDISKNE 610
Query: 782 LYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKII 824
++IVEGDSA GS KQ R+R QA+LPL+GK+LN+EK + K I
Sbjct: 611 IFIVEGDSAAGSAKQARNREIQAILPLKGKILNVEKIKNNKKI 653
Score = 217 (81.4 bits), Expect = 4.3e-90, Sum P(4) = 4.3e-90
Identities = 59/142 (41%), Positives = 75/142 (52%)
Query: 317 KDKNFIKFLIKIMLLKNK----NSYDIQDTQES----SYSASSIQILEGLEAVRKRPEMY 368
K N++ FL + + NK N Y Q+ + S +Y A I ILEGLEAVRKRP MY
Sbjct: 76 KGTNYM-FLKSLQPINNKKESSNKYVKQNNKHSFRCNNYDAKDIVILEGLEAVRKRPGMY 134
Query: 369 IGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYXXXXXXXXXXGRGXXXXXXXXX 428
IG+T D GLH +FEI+DNA+DE C +I V I+ GRG
Sbjct: 135 IGNT-DSKGLHQILFEIVDNAVDEYNNHECNQIKVIIHNDESITIEDNGRGIPCDIHEKT 193
Query: 429 XXXXXRSAAEIVMTELHAGGKF 450
+SA E V+T LH+G KF
Sbjct: 194 K----KSALETVLTVLHSGAKF 211
Score = 175 (66.7 bits), Expect = 4.3e-90, Sum P(4) = 4.3e-90
Identities = 34/61 (55%), Positives = 44/61 (72%)
Query: 841 EQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIK 900
+++ F LRY +IIIMTDAD+DG HI LLLTF YR ++IE G +Y+A PPLYK+
Sbjct: 692 KKNNFIDTSLRYGKIIIMTDADVDGEHICILLLTFLYRFQKEIIENGNVYVACPPLYKVT 751
Query: 901 Y 901
Y
Sbjct: 752 Y 752
Score = 155 (59.6 bits), Expect = 4.3e-90, Sum P(4) = 4.3e-90
Identities = 29/60 (48%), Positives = 43/60 (71%)
Query: 1094 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNA 1153
QR+KGLGEM QLW TTM+P +R L++V + DAI A+ + +LMG++ + R+ FI N+
Sbjct: 868 QRFKGLGEMMADQLWSTTMDPQVRKLIRVTVSDAIKANNLINSLMGEDSKSRKDFIIKNS 927
Score = 39 (18.8 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 15/53 (28%), Positives = 30/53 (56%)
Query: 4 VVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQIT 56
+++T ++ L+ L ++ + +K IL NIL K +K +FL+ ++ IT
Sbjct: 778 IIHTYSDSELNELLALLDM-DKAQILEN-KNIL--KKRKKENFLNGQGKLNIT 826
Score = 37 (18.1 bits), Expect = 9.2e-78, Sum P(4) = 9.2e-78
Identities = 10/43 (23%), Positives = 26/43 (60%)
Query: 958 RLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSN 1000
+++++I +++ AI ++ ++N E+++ K I K + SN
Sbjct: 889 QVRKLIRVTVSDAIKANNLINSLMGEDSKS-RKDFIIKNSSSN 930
Score = 37 (18.1 bits), Expect = 2.7e-23, Sum P(3) = 2.7e-23
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 636 LQVDGGTHLTGLRSGITRAINKYIEENEFLKKS----KIEIIGE-DIREGLTCVL 685
L V+ TG + R NK I++N F+ S KI I+ + D+ C+L
Sbjct: 668 LNVNYDNSKTGKSNTNKRNDNKDIKKNNFIDTSLRYGKIIIMTDADVDGEHICIL 722
Score = 37 (18.1 bits), Expect = 9.1e-19, Sum P(3) = 9.1e-19
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 299 SSSNREKASEELEINYNGKDKNFIKFLIK 327
+ N +K SE +E N K N+ +IK
Sbjct: 376 NKGNSDKVSENVENNSYTKLDNYEYEIIK 404
>UNIPROTKB|O69998 [details] [associations]
symbol:O69998 "Putative DNA gyrase subunit B"
species:100226 "Streptomyces coelicolor A3(2)" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 GenomeReviews:AL645882_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 KO:K02470
Gene3D:3.40.50.670 HOGENOM:HOG000075154 ProtClustDB:PRK05559
HSSP:P06982 EMBL:AL939125 PIR:T35196 RefSeq:NP_629945.1
ProteinModelPortal:O69998 GeneID:1101264 KEGG:sco:SCO5822
PATRIC:23741544 OMA:DSEMIIS Uniprot:O69998
Length = 707
Score = 484 (175.4 bits), Expect = 7.3e-90, Sum P(3) = 7.3e-90
Identities = 101/323 (31%), Positives = 178/323 (55%)
Query: 615 DVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIG 674
DV+++W Y+ + F N I GGTH+ G + + +N+ + + L+ ++ +I+
Sbjct: 311 DVALRWGTGYDTTVRSFVNIIATPKGGTHVAGFEQAVAKTMNEVLRTKKMLRVAEDDIVK 370
Query: 675 EDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFL----QENPGES 730
+D EGLT V+++++ +P+F QTK L +S R+ V +I + L FL ++ ++
Sbjct: 371 DDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAARRIVNNVISRELKAFLTSTKRDAAQQA 430
Query: 731 KLICXXXXXXXXXXXXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSA 790
+++ R+K ++ L KLADC+ + + EL+IVEGDSA
Sbjct: 431 RVVMEKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGDSA 490
Query: 791 GGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKL 850
G+ K R+ FQA+LP+RGK+LN++K+ ++ + + + F+++
Sbjct: 491 LGTAKLARNSEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGAGSGRT-FDIDAA 549
Query: 851 RYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKI-----KYGNNE 905
RY +II+MTDAD+DG+HIR LLLT F+R M ++E G ++ A PPL++I K G ++
Sbjct: 550 RYGKIIMMTDADVDGSHIRTLLLTLFHRYMRPMVEAGRVFAAVPPLHRIELVQPKKGQDK 609
Query: 906 -CYLRDDIEEERYMLKIAFKNVK 927
Y D E +++ KN++
Sbjct: 610 YVYTYSDRELRDKLMEFQSKNIR 632
Score = 377 (137.8 bits), Expect = 7.3e-90, Sum P(3) = 7.3e-90
Identities = 88/231 (38%), Positives = 126/231 (54%)
Query: 341 DTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTK 400
D S+Y+A + +LEGLEAVRKRP MYIG T D GL H ++EI+DN++DE+L GYC
Sbjct: 17 DRDGSNYTARHLLVLEGLEAVRKRPGMYIGST-DSRGLMHCLWEIIDNSVDEALGGYCDH 75
Query: 401 INVTIYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGG 460
I V ++ GRG S E+VMT+LHAGGKF +Y SGG
Sbjct: 76 IEVILHDDASVEVRDNGRGIPVDVEPKTGL----SGVEVVMTKLHAGGKFGGGAYAASGG 131
Query: 461 LHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGV-----LQNRIIKTINGISVSPIKII 515
LHG+G S VN LS L + ++ H + FR GV K G + +K +
Sbjct: 132 LHGVGASVVNALSARLDIEVDLGGHTHAISFRRGVPGTFAKAGPDAKFEAGSGLRKVKKV 191
Query: 516 GDTNKQGTKIHFWVDEKIF-SNIEFHYEILKKRIRELSFLNNGVCITLIDE 565
+++GT++ +W D +IF + + + L +R R+ +FL G+ I + DE
Sbjct: 192 -PKSRRGTRVRYWADRQIFLKDAKLSLDNLHQRARQTAFLVPGLTIVVRDE 241
Score = 146 (56.5 bits), Expect = 7.3e-90, Sum P(3) = 7.3e-90
Identities = 33/69 (47%), Positives = 46/69 (66%)
Query: 1094 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNA 1153
QRYKGLGEM+ QL ETTM+P R L ++ + D SA+++F LMG++V R++FI +A
Sbjct: 638 QRYKGLGEMDADQLAETTMDPRRRTLRRINLTDLDSAEQVFDLLMGNDVAPRKEFISSSA 697
Query: 1154 --LHAKNID 1160
L ID
Sbjct: 698 ATLDRSRID 706
Score = 38 (18.4 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 256 YEKSFLVNRNKLLRS--LQRIS---IISNDKLKGVRLVI 289
+E++ N++LR+ + R++ I+ +D L+G+ V+
Sbjct: 343 FEQAVAKTMNEVLRTKKMLRVAEDDIVKDDALEGLTAVV 381
>TIGR_CMR|SPO_1253 [details] [associations]
symbol:SPO_1253 "DNA topoisomerase IV, B subunit"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR005737
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:CP000031 GenomeReviews:CP000031_GR Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 OMA:GFIQSYC TIGRFAMs:TIGR01055
RefSeq:YP_166498.1 ProteinModelPortal:Q5LU07 GeneID:3192730
KEGG:sil:SPO1253 PATRIC:23375809 Uniprot:Q5LU07
Length = 652
Score = 789 (282.8 bits), Expect = 1.7e-88, Sum P(2) = 1.7e-88
Identities = 200/590 (33%), Positives = 299/590 (50%)
Query: 339 IQDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYC 398
+ Q ++Y ASSI++LEGLE VRKRP MYIG T D LHH V E+LDN++DE++AG+
Sbjct: 6 LSGAQTATYDASSIEVLEGLEPVRKRPGMYIGGT-DERALHHMVAEVLDNSMDEAVAGFA 64
Query: 399 TKINVTIYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKIS 458
+I V ++ GRG +SA E+++ LHAGGKF+ +Y+ S
Sbjct: 65 NRIEVELHADYALTVRDNGRGIPVDPHPKFPG---KSALEVILCTLHAGGKFSGKAYQTS 121
Query: 459 GGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDT 518
GGLHG+G S VN LS + + + R+K ++ F G+ + PI+ IG
Sbjct: 122 GGLHGVGASVVNALSDSMVVQVARDKLLYEQRFS------------RGLPLGPIQQIGAA 169
Query: 519 -NKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCI---TLIDERXXXXXXXX 574
N++GT + F DE+IF + F L K IR ++L +GV I + ID+
Sbjct: 170 PNRRGTTVTFHADEEIFGHHRFKPARLFKSIRSKAYLFSGVEIRWKSAIDD--GETPTEA 227
Query: 575 XXXXTSGFVSYINKS--KLVVHPTI-FQAXXXXXXXXXXXXXXDVSMQWNNSYNENILCF 631
G Y+ ++ K + F + ++ W S + I +
Sbjct: 228 TFHFPGGLADYLKETLGKASTYAEQPFAGTVDFTEKFNTPGKVEWAINWTPSRDGFIQSY 287
Query: 632 TNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKI-EIIGEDIREGLTCVLSIKIP 690
N + +GGTH G S I + I Y E + K +I +D+ G ++S I
Sbjct: 288 CNTVPTPEGGTHEAGFWSAILKGIRAY---GELISNKKAAQITRDDLLTGGCALVSCFIR 344
Query: 691 DPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXXXX 750
+P+F QTK++L + E ++ VE + ++L + + I
Sbjct: 345 EPEFVGQTKDRLATVEAQRLVEGAVRDHFDNWLAADTKSAGAILDFLVLRAEERIRRRQE 404
Query: 751 XXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRG 810
T++K + L KL DC + E EL+IVEGDSAGGS K RDR+ QA+LPLRG
Sbjct: 405 KE-TQRKTATKKLRLPGKLVDCSATSREGTELFIVEGDSAGGSAKMARDRKTQALLPLRG 463
Query: 811 KVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADIDGAHIRA 870
K+LN+ A K+ S Q FN++ LRY +IIIMTDAD+DGAHI A
Sbjct: 464 KILNVLGAASSKLG-SNQEISDLTQALGVGLGTRFNVDDLRYDKIIIMTDADVDGAHIAA 522
Query: 871 LLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLK 920
LL+TFF+ +M +I+ G++Y+A PPLY++ G Y D+ E + ++ K
Sbjct: 523 LLMTFFFTQMRPMIDTGHLYLACPPLYRLTQGAKRVYCLDEAERDEWLAK 572
Score = 114 (45.2 bits), Expect = 1.7e-88, Sum P(2) = 1.7e-88
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 1095 RYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADK--IFMTLMGDNVELRRKFIELN 1152
R+KGLGEM+ L +TTMNP R L++V I + + + LMG ELR ++I+ N
Sbjct: 584 RFKGLGEMDAKDLKDTTMNPETRKLIRVTIDEDEPGETGDLVERLMGKKPELRFQYIQEN 643
Query: 1153 ALHAKNIDI 1161
A + +D+
Sbjct: 644 ARFVEELDV 652
>TIGR_CMR|DET_0004 [details] [associations]
symbol:DET_0004 "DNA gyrase, B subunit" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 GO:GO:0006261 EMBL:CP000027
GenomeReviews:CP000027_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK05644
RefSeq:YP_180759.1 ProteinModelPortal:Q3ZAJ0 STRING:Q3ZAJ0
GeneID:3229139 KEGG:det:DET0004 PATRIC:21607113
BioCyc:DETH243164:GJNF-4-MONOMER Uniprot:Q3ZAJ0
Length = 642
Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
Identities = 174/471 (36%), Positives = 282/471 (59%)
Query: 510 SPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXX 569
+P++ +G ++ GT F D +IFS E+ +E L R+RE+++LN G+ + + DE+
Sbjct: 162 TPLEEVGVSDGSGTTTIFKADSQIFSTTEYDFETLTDRLREIAYLNKGLEVYIYDEQSDQ 221
Query: 570 XXXXXXXXXTSGFVSYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNNSYNENIL 629
+GFV ++N+++ V H +V++Q+N+ Y+++ L
Sbjct: 222 ERTYYFEGGITGFVRHLNRNREVRH-----RQPIYITKKSDSTILEVAIQYNDGYSDSTL 276
Query: 630 CFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKI 689
F N + +DGGTHLTG RS +TRA N Y +++FLK + ++G+D+REG+ ++S+K+
Sbjct: 277 TFANCVNTIDGGTHLTGFRSALTRAFNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKL 336
Query: 690 PDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXXX 749
P+P+F QTK KL + E++ VE + + L +L+E+P ++K I
Sbjct: 337 PEPQFEGQTKGKLGNIEIKSFVESAVTEQLSLYLEEHPDDTKRILEKCITAAKAREAARK 396
Query: 750 XXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLR 809
L +K+ +D L KLADC E++ LCEL++VEGDSAGGS KQGR+RRFQA+LPLR
Sbjct: 397 ARDLIIRKSALDTGTLPGKLADCSERDASLCELFLVEGDSAGGSAKQGRNRRFQAILPLR 456
Query: 810 GKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADIDGAHIR 869
GK+LN+EKA +K++ E+ + D F+ KLRY+R+++MTDAD+DG+HIR
Sbjct: 457 GKILNVEKASPDKMLAHEEIRAIITALAAGIDND-FDPAKLRYNRLVLMTDADVDGSHIR 515
Query: 870 ALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLI 929
LLLTFF+R MP+LI +++IAQPPLYKIK G+NE ++ +D E+E + + V +
Sbjct: 516 TLLLTFFFRHMPRLITESHLFIAQPPLYKIKIGSNEHWVYNDAEKETLLSQTKSNKVDIQ 575
Query: 930 SIEN-GDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNL 979
+ G++ E + +D ++T+ +++ + A +D I NL
Sbjct: 576 RYKGLGEMSAEQLWKTTMDPASRTL---------LEVKVEDAAKADQIFNL 617
Score = 434 (157.8 bits), Expect = 5.7e-54, Sum P(2) = 5.7e-54
Identities = 96/249 (38%), Positives = 140/249 (56%)
Query: 346 SYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTI 405
+Y+AS IQ+LEGL AVRKRP MYIG T D GLHH V+EI+ N++DE++AG C +I V I
Sbjct: 15 NYNASDIQVLEGLAAVRKRPGMYIGST-DQRGLHHLVYEIVYNSVDEAMAGVCDRIKVII 73
Query: 406 YXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIG 465
Y GRG SA E VMT LHAG KF +Y++SGGLHG+G
Sbjct: 74 YKDGSVSVEDNGRGIPIDIHPVTKI----SALETVMTVLHAGAKFGGKTYQVSGGLHGVG 129
Query: 466 LSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKI 525
S VN L+ + + + RN KI+ ++ G +P++ +G ++ GT
Sbjct: 130 ASVVNALAEWTTVKVRRNGKIYQQSYQ------------RGKPSTPLEEVGVSDGSGTTT 177
Query: 526 HFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSGFVSY 585
F D +IFS E+ +E L R+RE+++LN G+ + + DE+ +GFV +
Sbjct: 178 IFKADSQIFSTTEYDFETLTDRLREIAYLNKGLEVYIYDEQSDQERTYYFEGGITGFVRH 237
Query: 586 INKSKLVVH 594
+N+++ V H
Sbjct: 238 LNRNREVRH 246
Score = 195 (73.7 bits), Expect = 5.7e-54, Sum P(2) = 5.7e-54
Identities = 41/79 (51%), Positives = 53/79 (67%)
Query: 1083 LRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNV 1142
L N V QRYKGLGEM+ QLW+TTM+P R LL+VK++DA AD+IF LMG V
Sbjct: 564 LSQTKSNKVDIQRYKGLGEMSAEQLWKTTMDPASRTLLEVKVEDAAKADQIFNLLMGGEV 623
Query: 1143 ELRRKFIELNALHAKNIDI 1161
R+ FI+ ++ KN+DI
Sbjct: 624 APRKAFIQSHSKTVKNLDI 642
Score = 44 (20.5 bits), Expect = 5.3e-11, Sum P(2) = 5.3e-11
Identities = 19/63 (30%), Positives = 25/63 (39%)
Query: 337 YDIQDTQESSYSASS-----IQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAID 391
YD Q QE +Y ++ L VR R +YI SD T L + D D
Sbjct: 215 YDEQSDQERTYYFEGGITGFVRHLNRNREVRHRQPIYITKKSDSTILE-VAIQYNDGYSD 273
Query: 392 ESL 394
+L
Sbjct: 274 STL 276
>TIGR_CMR|CBU_0064 [details] [associations]
symbol:CBU_0064 "DNA topoisomerase IV, B subunit"
species:227377 "Coxiella burnetii RSA 493" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR005737
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE016828 GenomeReviews:AE016828_GR Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 TIGRFAMs:TIGR01055 RefSeq:NP_819117.2
ProteinModelPortal:Q83F84 PRIDE:Q83F84 GeneID:1207934
KEGG:cbu:CBU_0064 PATRIC:17928803 OMA:GNVCVAR
BioCyc:CBUR227377:GJ7S-66-MONOMER Uniprot:Q83F84
Length = 641
Score = 530 (191.6 bits), Expect = 1.4e-59, Sum P(2) = 1.4e-59
Identities = 138/435 (31%), Positives = 215/435 (49%)
Query: 505 NGISVSPIKIIGDTNKQ--GTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITL 562
+G S ++ +G NK GT IHFW D F +++F LK +R + L G+ +
Sbjct: 154 HGEKTSKLRPVGSCNKSESGTSIHFWPDSHYFDSVKFGVSALKHTMRAKAVLCPGLTVHF 213
Query: 563 IDERXXXXXXXXXXXXTSGFV--SYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQW 620
IDE ++ S ++ +L P + D ++ W
Sbjct: 214 IDENTGQRLQWYYAEGLKTYLADSLRDRERLPEEPWV-------GSFSGETEKADWALAW 266
Query: 621 NNSYNENIL-CFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIRE 679
+E I + N I GGTH+ GLR+G+ A+ ++ E ++ L ++ +++ EDI E
Sbjct: 267 LPEDDEGIRESYVNLIPTPQGGTHVNGLRTGLLEAMREFCEIHKLLPRN-LKLASEDIWE 325
Query: 680 GLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFD-FLQENPGESKLICXXXX 738
VLS+K+ +P+F+ QTK +L S + V ++ K F +L N K +
Sbjct: 326 QCHYVLSVKMQEPQFSGQTKERLTSRQSAVFVSGVV-KDAFSLWLNHNVEIGKTLAELVI 384
Query: 739 XXXXXXXXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGR 798
+ RKK + L KLADC +P CEL++VEGDSAGGS KQ R
Sbjct: 385 ANAQKRLRMSKK--IERKK-VTTGPALPGKLADCILSDPMQCELFLVEGDSAGGSAKQAR 441
Query: 799 DRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIM 858
D+ FQA++PLRGK+LN + E+++ S+ + D NLE LRY +I I+
Sbjct: 442 DKNFQAIMPLRGKILNTWEVDTEQVLASQ--TVHDIAIAIGVDPDSSNLEGLRYGKICIL 499
Query: 859 TDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYM 918
DAD DG HI LL F + L+ G++Y+A PPLY+I G + Y D+ E+E +
Sbjct: 500 ADADSDGYHIATLLCALFMKHFYPLVVSGHVYVAMPPLYRIDVGKDVFYALDEEEKEGVL 559
Query: 919 LKIAFKNVK-LISIE 932
+I + +K I+I+
Sbjct: 560 DRIKAEKLKGAINIQ 574
Score = 457 (165.9 bits), Expect = 4.8e-49, Sum P(2) = 4.8e-49
Identities = 121/400 (30%), Positives = 198/400 (49%)
Query: 333 NKNSYDIQDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDE 392
N+ + + T Y+A +I++L GLE V++RP MY DTS L H E +DN++DE
Sbjct: 2 NRRAMPTKKTTGKGYTAEAIEVLSGLEPVKRRPGMYT-DTSRPNHLAH---EAIDNSVDE 57
Query: 393 SLAGYCTKINVTIYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNK 452
++AG+ + V +Y GRG + E+++T LHAG KF+
Sbjct: 58 AIAGFAQNVEVILYKDGSLEVIDDGRGMPIDVHPEHKL----TGVELILTRLHAGAKFST 113
Query: 453 NSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPI 512
+Y+ SGGLHG+G+S VN LS+ L + + ++ KI+ M+F +G KT S +
Sbjct: 114 KTYEYSGGLHGVGISVVNALSKKLTVQVKKDGKIYQMDFAHGE------KT------SKL 161
Query: 513 KIIGDTNKQ--GTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXX 570
+ +G NK GT IHFW D F +++F LK +R + L G+ + IDE
Sbjct: 162 RPVGSCNKSESGTSIHFWPDSHYFDSVKFGVSALKHTMRAKAVLCPGLTVHFIDENTGQR 221
Query: 571 XXXXXXXXTSGFV--SYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNNSYNENI 628
++ S ++ +L P + D ++ W +E I
Sbjct: 222 LQWYYAEGLKTYLADSLRDRERLPEEPWV-------GSFSGETEKADWALAWLPEDDEGI 274
Query: 629 L-CFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSI 687
+ N I GGTH+ GLR+G+ A+ ++ E ++ L ++ +++ EDI E VLS+
Sbjct: 275 RESYVNLIPTPQGGTHVNGLRTGLLEAMREFCEIHKLLPRN-LKLASEDIWEQCHYVLSV 333
Query: 688 KIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFD-FLQEN 726
K+ +P+F+ QTK +L S + V ++ K F +L N
Sbjct: 334 KMQEPQFSGQTKERLTSRQSAVFVSGVV-KDAFSLWLNHN 372
Score = 117 (46.2 bits), Expect = 1.4e-59, Sum P(2) = 1.4e-59
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 1094 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIF-MTLMGDNVELRRKFIE 1150
QR+KGLGEMNP QL ETTMNP R L+++ +K +++ M L RR ++E
Sbjct: 574 QRFKGLGEMNPSQLRETTMNPDTRHLVRLTVKSKDKTEQLLDMLLAKKRAADRRDWLE 631
>UNIPROTKB|Q9KPD9 [details] [associations]
symbol:VC_2431 "Topoisomerase IV, subunit B" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0007059 "chromosome
segregation" evidence=ISS] [GO:0009340 "DNA topoisomerase IV
complex" evidence=ISS] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR005737 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 Gene3D:3.40.50.670 KO:K02622
ProtClustDB:PRK05559 TIGRFAMs:TIGR01055 HSSP:P06982 OMA:GNVCVAR
PIR:G82078 RefSeq:NP_232061.1 ProteinModelPortal:Q9KPD9 SMR:Q9KPD9
DNASU:2612973 GeneID:2612973 KEGG:vch:VC2431 PATRIC:20083881
GO:GO:0009340 Uniprot:Q9KPD9
Length = 626
Score = 500 (181.1 bits), Expect = 3.6e-57, Sum P(2) = 3.6e-57
Identities = 132/428 (30%), Positives = 202/428 (47%)
Query: 505 NGISVSPIKIIGDTNKQ--GTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITL 562
+G V+ + + G ++ GT +HFW D K F + F L +R + L G+ I
Sbjct: 143 HGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNFSVSRLINNLRAKAVLCPGLEIIF 202
Query: 563 IDERXXXXXXXXXXXXTSGFVSYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNN 622
D+ G Y+ + V T+ ++ W
Sbjct: 203 TDK---VNNNEHRWLYEDGLKDYLAEG--VKGYTLLPEEPFTGEFTAQTEAATWAVIWLP 257
Query: 623 SYNENIL-CFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGL 681
E I + N I GGTH+ GLR G+ A+ ++ E L + +++ GED+ +
Sbjct: 258 EGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRG-VKLTGEDVFDRC 316
Query: 682 TCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFD-FLQENPGESKLICXXXXXX 740
VLSIK+ DP+F QTK +L S + V ++ K F +L E P ++ +
Sbjct: 317 AYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVV-KDAFSLWLNEKPQLAEQLAEVCIAN 375
Query: 741 XXXXXXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDR 800
+ RKK + L KL DC ++ EL++VEGDSAGGS KQ RDR
Sbjct: 376 AHSRMRASKK--VVRKK-IASGPALPGKLTDCTVQDLNRTELFLVEGDSAGGSAKQARDR 432
Query: 801 RFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTD 860
FQAV+PLRGK+LN + ++++ S++ + D NLE LRY ++ I+ D
Sbjct: 433 EFQAVMPLRGKILNTWEVSADQVLASQEVHDISVALGIDPDSD--NLEALRYGKVCILAD 490
Query: 861 ADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLK 920
AD DG HI LL F R L++ G++Y+A PPLY+I G Y DD E+E + +
Sbjct: 491 ADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKEVFYALDDQEKEGVLER 550
Query: 921 IAFKNVKL 928
++ K K+
Sbjct: 551 LSQKKAKV 558
Score = 433 (157.5 bits), Expect = 9.1e-47, Sum P(2) = 9.1e-47
Identities = 117/383 (30%), Positives = 184/383 (48%)
Query: 347 YSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIY 406
Y+A +I++L GLE VR+RP MY +D T +H E++DN++DE+LAGY +KI V ++
Sbjct: 5 YNAGAIEVLNGLEPVRRRPGMY----TDTTRPNHLGQEVIDNSVDEALAGYASKIQVILH 60
Query: 407 XXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGL 466
GRG S E+++ +LHAGGKF+ +Y+ SGGLHG+G+
Sbjct: 61 ADQSLEVIDDGRGMPVDIHPEEKV----SGVELILCKLHAGGKFSNKNYQFSGGLHGVGI 116
Query: 467 SCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIH 526
S VN LS+ +++ + R+ +++ + F +G + T+ G G N GT +H
Sbjct: 117 SVVNALSKRVEVAVRRDGQVYEIAFEHGDKVTEL--TVTGTC-------GRRNT-GTSVH 166
Query: 527 FWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSGFVSYI 586
FW D K F + F L +R + L G+ I D+ G Y+
Sbjct: 167 FWPDTKYFDSPNFSVSRLINNLRAKAVLCPGLEIIFTDK---VNNNEHRWLYEDGLKDYL 223
Query: 587 NKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNNSYNENIL-CFTNNILQVDGGTHLT 645
+ V T+ ++ W E I + N I GGTH+
Sbjct: 224 AEG--VKGYTLLPEEPFTGEFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVN 281
Query: 646 GLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSS 705
GLR G+ A+ ++ E L + +++ GED+ + VLSIK+ DP+F QTK +L S
Sbjct: 282 GLRQGLLDAMREFCEFRNLLPRG-VKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSR 340
Query: 706 EVRKPVEEIIIKTLFD-FLQENP 727
+ V ++ K F +L E P
Sbjct: 341 QSAAFVSGVV-KDAFSLWLNEKP 362
Score = 125 (49.1 bits), Expect = 3.6e-57, Sum P(2) = 3.6e-57
Identities = 28/60 (46%), Positives = 41/60 (68%)
Query: 1094 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDN-VELRRKFIELN 1152
QR+KGLGEMNP QL ETTM+P R L+++ I DA + D++ L+G + RR +++ N
Sbjct: 561 QRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRADDRRAWLQRN 620
>TIGR_CMR|VC_2431 [details] [associations]
symbol:VC_2431 "topoisomerase IV, subunit B" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006265 "DNA topological change"
evidence=ISS] [GO:0007059 "chromosome segregation" evidence=ISS]
[GO:0009340 "DNA topoisomerase IV complex" evidence=ISS]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR005737 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
Gene3D:3.40.50.670 KO:K02622 ProtClustDB:PRK05559
TIGRFAMs:TIGR01055 HSSP:P06982 OMA:GNVCVAR PIR:G82078
RefSeq:NP_232061.1 ProteinModelPortal:Q9KPD9 SMR:Q9KPD9
DNASU:2612973 GeneID:2612973 KEGG:vch:VC2431 PATRIC:20083881
GO:GO:0009340 Uniprot:Q9KPD9
Length = 626
Score = 500 (181.1 bits), Expect = 3.6e-57, Sum P(2) = 3.6e-57
Identities = 132/428 (30%), Positives = 202/428 (47%)
Query: 505 NGISVSPIKIIGDTNKQ--GTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITL 562
+G V+ + + G ++ GT +HFW D K F + F L +R + L G+ I
Sbjct: 143 HGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNFSVSRLINNLRAKAVLCPGLEIIF 202
Query: 563 IDERXXXXXXXXXXXXTSGFVSYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNN 622
D+ G Y+ + V T+ ++ W
Sbjct: 203 TDK---VNNNEHRWLYEDGLKDYLAEG--VKGYTLLPEEPFTGEFTAQTEAATWAVIWLP 257
Query: 623 SYNENIL-CFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGL 681
E I + N I GGTH+ GLR G+ A+ ++ E L + +++ GED+ +
Sbjct: 258 EGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRG-VKLTGEDVFDRC 316
Query: 682 TCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFD-FLQENPGESKLICXXXXXX 740
VLSIK+ DP+F QTK +L S + V ++ K F +L E P ++ +
Sbjct: 317 AYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVV-KDAFSLWLNEKPQLAEQLAEVCIAN 375
Query: 741 XXXXXXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDR 800
+ RKK + L KL DC ++ EL++VEGDSAGGS KQ RDR
Sbjct: 376 AHSRMRASKK--VVRKK-IASGPALPGKLTDCTVQDLNRTELFLVEGDSAGGSAKQARDR 432
Query: 801 RFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTD 860
FQAV+PLRGK+LN + ++++ S++ + D NLE LRY ++ I+ D
Sbjct: 433 EFQAVMPLRGKILNTWEVSADQVLASQEVHDISVALGIDPDSD--NLEALRYGKVCILAD 490
Query: 861 ADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLK 920
AD DG HI LL F R L++ G++Y+A PPLY+I G Y DD E+E + +
Sbjct: 491 ADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKEVFYALDDQEKEGVLER 550
Query: 921 IAFKNVKL 928
++ K K+
Sbjct: 551 LSQKKAKV 558
Score = 433 (157.5 bits), Expect = 9.1e-47, Sum P(2) = 9.1e-47
Identities = 117/383 (30%), Positives = 184/383 (48%)
Query: 347 YSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIY 406
Y+A +I++L GLE VR+RP MY +D T +H E++DN++DE+LAGY +KI V ++
Sbjct: 5 YNAGAIEVLNGLEPVRRRPGMY----TDTTRPNHLGQEVIDNSVDEALAGYASKIQVILH 60
Query: 407 XXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGL 466
GRG S E+++ +LHAGGKF+ +Y+ SGGLHG+G+
Sbjct: 61 ADQSLEVIDDGRGMPVDIHPEEKV----SGVELILCKLHAGGKFSNKNYQFSGGLHGVGI 116
Query: 467 SCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIH 526
S VN LS+ +++ + R+ +++ + F +G + T+ G G N GT +H
Sbjct: 117 SVVNALSKRVEVAVRRDGQVYEIAFEHGDKVTEL--TVTGTC-------GRRNT-GTSVH 166
Query: 527 FWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSGFVSYI 586
FW D K F + F L +R + L G+ I D+ G Y+
Sbjct: 167 FWPDTKYFDSPNFSVSRLINNLRAKAVLCPGLEIIFTDK---VNNNEHRWLYEDGLKDYL 223
Query: 587 NKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNNSYNENIL-CFTNNILQVDGGTHLT 645
+ V T+ ++ W E I + N I GGTH+
Sbjct: 224 AEG--VKGYTLLPEEPFTGEFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVN 281
Query: 646 GLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSS 705
GLR G+ A+ ++ E L + +++ GED+ + VLSIK+ DP+F QTK +L S
Sbjct: 282 GLRQGLLDAMREFCEFRNLLPRG-VKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSR 340
Query: 706 EVRKPVEEIIIKTLFD-FLQENP 727
+ V ++ K F +L E P
Sbjct: 341 QSAAFVSGVV-KDAFSLWLNEKP 362
Score = 125 (49.1 bits), Expect = 3.6e-57, Sum P(2) = 3.6e-57
Identities = 28/60 (46%), Positives = 41/60 (68%)
Query: 1094 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDN-VELRRKFIELN 1152
QR+KGLGEMNP QL ETTM+P R L+++ I DA + D++ L+G + RR +++ N
Sbjct: 561 QRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRADDRRAWLQRN 620
>UNIPROTKB|P20083 [details] [associations]
symbol:parE species:83333 "Escherichia coli K-12"
[GO:0030541 "plasmid partitioning" evidence=IDA] [GO:0051276
"chromosome organization" evidence=IMP] [GO:0007062 "sister
chromatid cohesion" evidence=IMP] [GO:0005694 "chromosome"
evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA] [GO:0046677
"response to antibiotic" evidence=IEA] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;IBA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;IBA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR005737 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046677 GO:GO:0006261 EMBL:U28377
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0007062 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880
HOGENOM:HOG000075154 GO:GO:0030541 KO:K02622 ProtClustDB:PRK05559
EMBL:M58409 EMBL:L22026 PIR:D65090 RefSeq:NP_417502.1
RefSeq:YP_491222.1 PDB:1S14 PDB:1S16 PDB:3FV5 PDBsum:1S14
PDBsum:1S16 PDBsum:3FV5 ProteinModelPortal:P20083 SMR:P20083
DIP:DIP-10441N IntAct:P20083 MINT:MINT-1223307 PRIDE:P20083
EnsemblBacteria:EBESCT00000001166 EnsemblBacteria:EBESCT00000016957
GeneID:12933399 GeneID:947501 KEGG:ecj:Y75_p2956 KEGG:eco:b3030
PATRIC:32121470 EchoBASE:EB0681 EcoGene:EG10687 OMA:GFIQSYC
BioCyc:EcoCyc:EG10687-MONOMER BioCyc:ECOL316407:JW2998-MONOMER
BindingDB:P20083 EvolutionaryTrace:P20083 Genevestigator:P20083
HAMAP:MF_00938 TIGRFAMs:TIGR01055 Uniprot:P20083
Length = 630
Score = 500 (181.1 bits), Expect = 2.0e-54, Sum P(2) = 2.0e-54
Identities = 133/448 (29%), Positives = 215/448 (47%)
Query: 483 NKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQ--GTKIHFWVDEKIFSNIEFH 540
+K++ R G + N I NG V ++++G K+ GT +HFW DE F + F
Sbjct: 123 SKRVEVNVRRDGQVYN--IAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFS 180
Query: 541 YEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSGFVSYINKSKLVVHPTIFQA 600
L ++ + L GV IT DE G Y+ ++ + PT+ +
Sbjct: 181 VSRLTHVLKAKAVLCPGVEITFKDE---INNTEQRWCYQDGLNDYLAEAVNGL-PTLPEK 236
Query: 601 XXXXXXXXXXXXXXDVSMQWNNSYNENIL-CFTNNILQVDGGTHLTGLRSGITRAINKYI 659
D ++ W E + + N I + GGTH+ GLR G+ A+ ++
Sbjct: 237 PFIGNFAGDTEAV-DWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295
Query: 660 EENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTL 719
E L + +++ EDI + VLS+K+ DP+F QTK +L S + V ++
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354
Query: 720 FDFLQENPGESKLICXXXXXXXXXXXXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPEL 779
+L +N ++L+ + RKK L L KLADC ++
Sbjct: 355 ILWLNQNVQAAELLAEMAISSAQRRMRAAKK--VVRKK-LTSGPALPGKLADCTAQDLNR 411
Query: 780 CELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXX 839
EL++VEGDSAGGS KQ RDR +QA++PL+GK+LN + ++++ S++
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGID 471
Query: 840 XEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKI 899
+ D+ L +LRY +I I+ DAD DG HI LL F + L+++G++Y+A PPLY+I
Sbjct: 472 PDSDD--LSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529
Query: 900 KYGNNECYLRDDIEEERYMLKIAFKNVK 927
G Y + E+E + ++ K K
Sbjct: 530 DLGKEVYYALTEEEKEGVLEQLKRKKGK 557
Score = 431 (156.8 bits), Expect = 1.1e-43, Sum P(2) = 1.1e-43
Identities = 113/391 (28%), Positives = 193/391 (49%)
Query: 346 SYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTI 405
+Y+A +I++L GLE VR+RP MY +D T +H E++DN++DE+LAG+ +++V +
Sbjct: 4 TYNADAIEVLTGLEPVRRRPGMY----TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVIL 59
Query: 406 YXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIG 465
+ GRG A E+++ LHAGGKF+ +Y+ SGGLHG+G
Sbjct: 60 HADQSLEVIDDGRGMPVDIHPEEGV----PAVELILCRLHAGGKFSNKNYQFSGGLHGVG 115
Query: 466 LSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQ--GT 523
+S VN LS+ +++ + R+ +++ + F NG V ++++G K+ GT
Sbjct: 116 ISVVNALSKRVEVNVRRDGQVYNIAFE------------NGEKVQDLQVVGTCGKRNTGT 163
Query: 524 KIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSGFV 583
+HFW DE F + F L ++ + L GV IT DE G
Sbjct: 164 SVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDE---INNTEQRWCYQDGLN 220
Query: 584 SYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNNSYNENIL-CFTNNILQVDGGT 642
Y+ ++ + PT+ + D ++ W E + + N I + GGT
Sbjct: 221 DYLAEAVNGL-PTLPEKPFIGNFAGDTEAV-DWALLWLPEGGELLTESYVNLIPTMQGGT 278
Query: 643 HLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKL 702
H+ GLR G+ A+ ++ E L + +++ EDI + VLS+K+ DP+F QTK +L
Sbjct: 279 HVNGLRQGLLDAMREFCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERL 337
Query: 703 VSSEVRKPVEEIIIKTLFDFLQENPGESKLI 733
S + V ++ +L +N ++L+
Sbjct: 338 SSRQCAAFVSGVVKDAFILWLNQNVQAAELL 368
Score = 99 (39.9 bits), Expect = 2.0e-54, Sum P(2) = 2.0e-54
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 1094 QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKD 1126
QR+KGLGEMNP QL ETT++P R L+++ I D
Sbjct: 561 QRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD 593
>TIGR_CMR|SO_3899 [details] [associations]
symbol:SO_3899 "DNA topoisomerase IV, B subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR005737
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 TIGRFAMs:TIGR01055 HSSP:P06982 OMA:QARDKEF
RefSeq:NP_719430.1 ProteinModelPortal:Q8EAK3 SMR:Q8EAK3
GeneID:1171539 KEGG:son:SO_3899 PATRIC:23527480 Uniprot:Q8EAK3
Length = 628
Score = 475 (172.3 bits), Expect = 8.9e-53, Sum P(2) = 8.9e-53
Identities = 127/426 (29%), Positives = 199/426 (46%)
Query: 505 NGISVSPIKIIGDTNKQ--GTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITL 562
NG V +K+ G ++ GT++HFW D F + F L +R + L G+ I
Sbjct: 143 NGFKVEELKVTGTCGRRNTGTRVHFWPDTSYFDSPNFSNSKLIYLLRAKAVLCPGLRIKF 202
Query: 563 IDERXXXXXXXXXXXXTSGFVSYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNN 622
++ SG Y+ + V + D ++ W
Sbjct: 203 TNKHTNEVHEWYYE---SGLTDYLKAA--VGDNIMLPEEPFIGSFKGQIEAADWAITWLP 257
Query: 623 SYNENIL-CFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGL 681
E+I + N I GGTH+ G R G+ ++ ++ E + + I++ EDI +
Sbjct: 258 EGGESINESYVNLIPTPLGGTHVNGFRQGLLESMREFCEFRNLIPRG-IKLSPEDIWDRA 316
Query: 682 TCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXX 741
+LS+K+ DP+F QTK KL S + V I+ +L N ++ +
Sbjct: 317 AFILSVKMQDPQFAGQTKEKLSSRQSSAFVSGIVRDAFSLWLNSNTELAESLAEMCINNA 376
Query: 742 XXXXXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRR 801
+ RKK + L KL DC ++P EL++VEGDSAGGS KQ RDR
Sbjct: 377 QKRLKAAKK--VARKK-VTSGPALPGKLTDCSGQDPMRGELFLVEGDSAGGSAKQARDRE 433
Query: 802 FQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDA 861
FQA++PLRGK+LN + +++ S++ + D ++ +LRY +I I+ DA
Sbjct: 434 FQAIMPLRGKILNTWEVDASQVLASQEVHDISVAIGC--DPDSNDISELRYGKICILADA 491
Query: 862 DIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKI 921
D DG HI LL F + L+E G++YIA PPL++I G + Y DD E+E + +I
Sbjct: 492 DSDGLHIATLLCALFLKHYRVLVEQGHVYIAMPPLFRIDIGKDVYYALDDAEKEGVLDRI 551
Query: 922 AFKNVK 927
+N K
Sbjct: 552 NAENKK 557
Score = 415 (151.1 bits), Expect = 1.0e-42, Sum P(2) = 1.0e-42
Identities = 110/385 (28%), Positives = 184/385 (47%)
Query: 345 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVT 404
+ Y++ +I++L GL+ V++RP MY +D T +H E++DN++DE+LAG+ TKI V
Sbjct: 3 NQYTSDAIEVLNGLDPVKRRPGMY----TDTTRPNHLGQEVIDNSVDEALAGHATKIEVV 58
Query: 405 IYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGI 464
++ GRG E+++T+LHAGGKF+ +Y+ SGGLHG+
Sbjct: 59 LHTDNSLEVTDDGRGMPVDIHPEEGI----PGVELILTKLHAGGKFSNKNYQFSGGLHGV 114
Query: 465 GLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQ--G 522
G+S VN LSR +++T+ R+ +++ + F NG V +K+ G ++ G
Sbjct: 115 GISVVNALSRRVEVTVRRDGQVYDIAFE------------NGFKVEELKVTGTCGRRNTG 162
Query: 523 TKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSGF 582
T++HFW D F + F L +R + L G+ I ++ SG
Sbjct: 163 TRVHFWPDTSYFDSPNFSNSKLIYLLRAKAVLCPGLRIKFTNKHTNEVHEWYYE---SGL 219
Query: 583 VSYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNNSYNENIL-CFTNNILQVDGG 641
Y+ + V + D ++ W E+I + N I GG
Sbjct: 220 TDYLKAA--VGDNIMLPEEPFIGSFKGQIEAADWAITWLPEGGESINESYVNLIPTPLGG 277
Query: 642 THLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNK 701
TH+ G R G+ ++ ++ E + + I++ EDI + +LS+K+ DP+F QTK K
Sbjct: 278 THVNGFRQGLLESMREFCEFRNLIPRG-IKLSPEDIWDRAAFILSVKMQDPQFAGQTKEK 336
Query: 702 LVSSEVRKPVEEIIIKTLFDFLQEN 726
L S + V I+ +L N
Sbjct: 337 LSSRQSSAFVSGIVRDAFSLWLNSN 361
Score = 109 (43.4 bits), Expect = 8.9e-53, Sum P(2) = 8.9e-53
Identities = 30/67 (44%), Positives = 37/67 (55%)
Query: 1084 RNEAENMVIK---QRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGD 1140
R AEN K R+KGLGEMNP QL ETTM+P R L+++ I DA D + L+
Sbjct: 550 RINAENKKGKVQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEETDSLMDMLLAK 609
Query: 1141 NVELRRK 1147
RK
Sbjct: 610 KRSPDRK 616
>UNIPROTKB|A6VD80 [details] [associations]
symbol:parE "DNA topoisomerase IV, B subunit"
species:381754 "Pseudomonas aeruginosa PA7" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR005737 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 EMBL:CP000744 GenomeReviews:CP000744_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187
Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 TIGRFAMs:TIGR01055 RefSeq:YP_001351015.1
ProteinModelPortal:A6VD80 SMR:A6VD80 STRING:A6VD80 GeneID:5355906
KEGG:pap:PSPA7_5696 PATRIC:19832877 OMA:QARDKEF
BioCyc:PAER381754:GHMY-5702-MONOMER Uniprot:A6VD80
Length = 629
Score = 478 (173.3 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
Identities = 124/421 (29%), Positives = 199/421 (47%)
Query: 505 NGISVSPIKIIGDTNKQ--GTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITL 562
+G + +++IG ++ GT +HFW D K F + +F LK ++ + L G+ +
Sbjct: 142 DGFKDTDLEVIGTVGRRNTGTSVHFWPDPKYFDSAKFSVSRLKHVLKAKAVLCPGLSVVF 201
Query: 563 IDERXXXXXXXXXXXXTSGFVSYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNN 622
D+ G SY+ + + P + ++ W
Sbjct: 202 EDKNTGERVEWHFE---DGLRSYLTDAVAEL-PRL-PDEPFCGNLEGSKEAVSWALLWLP 256
Query: 623 SYNENIL-CFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGL 681
E++ + N I GGTH+ GLR G+ A+ ++ E L + +++ ED+ E +
Sbjct: 257 EGGESVQESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRG-VKLAPEDVWERI 315
Query: 682 TCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXX 741
VLS+K+ +P+F+ QTK +L S E V ++ K F E L
Sbjct: 316 AFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVV-KDAFSLWLNEHAEIGLQLAELAISN 374
Query: 742 XXXXXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRR 801
+ RKK + L KLADC + P EL++VEGDSAGGS KQ RD+
Sbjct: 375 AGRRLKAGKK-VERKK-ITQGPALPGKLADCAGQEPMRAELFLVEGDSAGGSAKQARDKE 432
Query: 802 FQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDA 861
FQA++PLRGK+LN + +++ S++ + +L +LRY +I I+ DA
Sbjct: 433 FQAIMPLRGKILNTWEVDGGEVLASQEVHDIAVAIGV--DPGASDLAQLRYGKICILADA 490
Query: 862 DIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKI 921
D DG HI LL F R L+E G++Y+A PPLY+I G + Y D+ E + + ++
Sbjct: 491 DSDGLHIATLLCALFVRHFRPLVEAGHVYVAMPPLYRIDLGKDIYYALDEAERDGILERL 550
Query: 922 A 922
A
Sbjct: 551 A 551
Score = 412 (150.1 bits), Expect = 8.5e-42, Sum P(2) = 8.5e-42
Identities = 109/386 (28%), Positives = 188/386 (48%)
Query: 345 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVT 404
++Y+A +I++L GL+ VRKRP MY +D T +H E++DN++DE+LAG+ + V
Sbjct: 2 ATYNADAIEVLSGLDPVRKRPGMY----TDTTRPNHLAQEVIDNSVDEALAGHAKSVQVI 57
Query: 405 IYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGI 464
++ GRG E+++T+LHAGGKF+ +Y+ SGGLHG+
Sbjct: 58 LHQDNSLEVIDDGRGMPVDIHPEEGV----PGVELILTKLHAGGKFSNKNYQFSGGLHGV 113
Query: 465 GLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQ--G 522
G+S VN LS +++ + R+ + M F +G + +++IG ++ G
Sbjct: 114 GISVVNALSTRVEVRVKRDANEYRMTFA------------DGFKDTDLEVIGTVGRRNTG 161
Query: 523 TKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSGF 582
T +HFW D K F + +F LK ++ + L G+ + D+ G
Sbjct: 162 TSVHFWPDPKYFDSAKFSVSRLKHVLKAKAVLCPGLSVVFEDKNTGERVEWHFE---DGL 218
Query: 583 VSYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNNSYNENIL-CFTNNILQVDGG 641
SY+ + + P + ++ W E++ + N I GG
Sbjct: 219 RSYLTDAVAEL-PRL-PDEPFCGNLEGSKEAVSWALLWLPEGGESVQESYVNLIPTAQGG 276
Query: 642 THLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNK 701
TH+ GLR G+ A+ ++ E L + +++ ED+ E + VLS+K+ +P+F+ QTK +
Sbjct: 277 THVNGLRQGLLDAMREFCEFRNLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKER 335
Query: 702 LVSSEVRKPVEEIIIKTLFD-FLQEN 726
L S E V ++ K F +L E+
Sbjct: 336 LSSREAAAFVSGVV-KDAFSLWLNEH 360
Score = 104 (41.7 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 1095 RYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIF-MTLMGDNVELRRKFIE 1150
R+KGLGEMNP QL ETTM+P R L+++ ++DA +I M L R+ ++E
Sbjct: 563 RFKGLGEMNPLQLRETTMDPNTRRLVQLTLEDATGTLEIMDMLLAKKRAGDRKSWLE 619
>TIGR_CMR|CBU_0002 [details] [associations]
symbol:CBU_0002 "DNA polymerase III, beta subunit"
species:227377 "Coxiella burnetii RSA 493" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001001 InterPro:IPR022634
InterPro:IPR022635 InterPro:IPR022637 Pfam:PF00712 Pfam:PF02767
Pfam:PF02768 PIRSF:PIRSF000804 SMART:SM00480 GO:GO:0005737
GO:GO:0003677 GO:GO:0006260 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0008408 GO:GO:0003887 GO:GO:0009360 HOGENOM:HOG000071791
KO:K02338 OMA:DYNRVIP ProtClustDB:PRK05643 TIGRFAMs:TIGR00663
RefSeq:NP_819058.1 HSSP:P00583 ProteinModelPortal:Q83FD7
GeneID:1207922 KEGG:cbu:CBU_0002 PATRIC:17928681
BioCyc:CBUR227377:GJ7S-3-MONOMER Uniprot:Q83FD7
Length = 369
Score = 528 (190.9 bits), Expect = 7.8e-50, P = 7.8e-50
Identities = 114/354 (32%), Positives = 199/354 (56%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
+N + +L PLQ+VI +VE+K LPILSN+L+ ++++S TD EV++ T +
Sbjct: 3 LNLIRETLLKPLQLVIGVVERKQTLPILSNVLLSIETDQLSITGTDLEVELIGQTKLDKN 62
Query: 65 NS-SINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTL 123
++ S + + RK +DI R+LP+ + +Y + + + ++SG+S+F L TL ++++P +
Sbjct: 63 STESSRLTLPGRKLMDICRALPDNAPIELYRDKEKIILRSGRSRFMLSTLPSEDFPAVER 122
Query: 124 NSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
E L Q T + +L +F++AQQD+RYYLNGLLL + A+++DGHRL
Sbjct: 123 RES-QLELALPQSTFRHLLYRTHFAMAQQDVRYYLNGLLLETYPNKLRAIATDGHRLAAN 181
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQXXXXXXXXXXXXXXXDG 243
+ + IIIPRK + L RLLE E ++I NN +G
Sbjct: 182 TLLVQTNTEHRLQIIIPRKGIIELLRLLEEDEALATIRIGNNHIGVSTNDFTFTSKLIEG 241
Query: 244 KFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNR 303
+F D + VI +K F+++R+ L ++L R +I+ N+K KGVR ++ L+I ++ +
Sbjct: 242 RFPDCERVIPKGGDKQFVIDRDILKQALSRTAILCNEKFKGVRFELRQGLLRILATNPEQ 301
Query: 304 EKASEELEINYNGK--DKNF-IKFLIKIMLLKNKNSYDIQ-DTQESSYSASSIQ 353
E A EE+ I+Y G+ D F + +++ I+ + N + + T +SS + ++
Sbjct: 302 EAAEEEINIDYTGENLDIGFNVGYVLDILNVVNSGNIRLTFSTADSSVLINEVE 355
>UNIPROTKB|Q3KL33 [details] [associations]
symbol:gyrB_2 "DNA gyrase subunit B" species:315277
"Chlamydia trachomatis A/HAR-13" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 EMBL:CP000051
GenomeReviews:CP000051_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670
HOGENOM:HOG000075156 ProtClustDB:PRK05559 RefSeq:YP_328487.1
ProteinModelPortal:Q3KL33 STRING:Q3KL33 GeneID:3687725
KEGG:cta:CTA_0718 PATRIC:32023360 OMA:VFESQTK
BioCyc:CTRA315277:GI4C-739-MONOMER Uniprot:Q3KL33
Length = 605
Score = 334 (122.6 bits), Expect = 9.9e-50, Sum P(3) = 9.9e-50
Identities = 86/298 (28%), Positives = 147/298 (49%)
Query: 625 NENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCV 684
+E F N DGGTHL + GI + +N++ +N +DIREGL
Sbjct: 246 SEQYFSFVNGQETTDGGTHLVAFKEGIVKGVNEFFGKN---------FSSQDIREGLAGC 296
Query: 685 LSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXX 744
++IKI P F SQTKNKL ++ +R + + + + + L++NP ++ I
Sbjct: 297 IAIKIASPIFESQTKNKLGNTNIRAELAKRVKEAVLSSLKKNPSSAERIQEKIKLNEKTR 356
Query: 745 XXXXXXXXLTRKKNLIDDIELSTKLADCQ---EKNP---ELCELYIVEGDSAGGSVKQGR 798
+ K ++ KL DC+ N + ++I EG+SA S+ R
Sbjct: 357 KNAQFLKQELKDKQKKLHYKIP-KLRDCKFHLTDNSLYGKNSSIFITEGESASASILASR 415
Query: 799 DRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIM 858
+ QAV LRGK +N+ ++ E I +++ + +L+ LRY+++I+
Sbjct: 416 NPLTQAVFSLRGKPMNVFSSKEETIYKNDELFYLTTALGLHKD----SLQNLRYNQVILA 471
Query: 859 TDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEER 916
TDAD+DG HIR L++TFF + L+ +++I + PL+K+++ + Y EEE+
Sbjct: 472 TDADVDGMHIRNLMITFFLKTFLPLVASNHLFILETPLFKVRHKDATFYCYS--EEEK 527
Score = 234 (87.4 bits), Expect = 9.9e-50, Sum P(3) = 9.9e-50
Identities = 71/228 (31%), Positives = 111/228 (48%)
Query: 343 QESSYSASSIQILEGLEAVRKRPEMYIGDTSDGT----GLHHFVFEILDNAIDESLAGYC 398
++++YS SSI L L+ +R R MYIG DG+ G++ E++DNAIDE + GY
Sbjct: 3 KKTAYSESSIISLASLDHIRLRAGMYIGRLGDGSQAEDGIYTLFKEVVDNAIDEFVMGYG 62
Query: 399 TKINVTIYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKIS 458
I++T GRG + V ++++ G K+ ++ + S
Sbjct: 63 HTIHIT-GDAHELSIRDEGRGIPLG-----------KVIDCV-SKINTGAKYTQDVFHFS 109
Query: 459 GGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDT 518
GL+G+GL VN LS+ + RNKK F G+L + T G + P
Sbjct: 110 VGLNGVGLKAVNALSQHFSVRSVRNKKFLKASFSKGIL----LHTEQGATQDP------- 158
Query: 519 NKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDER 566
GT++ F D ++F N F E LKK+IR+ ++L+ G+ I ER
Sbjct: 159 --DGTEVVFSPDHELFENFSFQVEFLKKKIRQYTYLHPGLTIIYNGER 204
Score = 75 (31.5 bits), Expect = 9.9e-50, Sum P(3) = 9.9e-50
Identities = 21/79 (26%), Positives = 41/79 (51%)
Query: 1071 YTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISA 1130
Y+ I ++ + ++ I R+KGLGE++P + +++ + +R L V + D +
Sbjct: 522 YSEEEKLSTIEHIGKKESSLEIT-RFKGLGEISPKE-FKSFIGADMR-LTPVSLPDTETL 578
Query: 1131 DKIFMTLMGDNVELRRKFI 1149
D + MG N + R+ FI
Sbjct: 579 DTLLQFYMGKNTKERKLFI 597
>TIGR_CMR|SO_0009 [details] [associations]
symbol:SO_0009 "DNA polymerase III, beta subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR001001 InterPro:IPR022634
InterPro:IPR022635 InterPro:IPR022637 Pfam:PF00712 Pfam:PF02767
Pfam:PF02768 PIRSF:PIRSF000804 SMART:SM00480 GO:GO:0005737
GO:GO:0003677 GO:GO:0006260 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0008408 GO:GO:0003887 GO:GO:0009360 HOGENOM:HOG000071791
KO:K02338 OMA:DYNRVIP ProtClustDB:PRK05643 TIGRFAMs:TIGR00663
HSSP:P00583 RefSeq:NP_715651.1 ProteinModelPortal:Q8EKT1 SMR:Q8EKT1
GeneID:1167907 KEGG:son:SO_0009 PATRIC:23519709 Uniprot:Q8EKT1
Length = 366
Score = 525 (189.9 bits), Expect = 1.6e-49, P = 1.6e-49
Identities = 117/349 (33%), Positives = 201/349 (57%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGN-S 66
+++A+L PLQ+V VE+++ LPIL+N+LV + + TD EV++ AV +G+
Sbjct: 6 DRDALLKPLQLVCGAVERRHNLPILANLLVEVSGHSLKLTGTDLEVELVGQ-AVIHGDIE 64
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSK 126
V A+K +DI++SLPE ++ + ++ ++SG+S+F+L TL A+EYP + +
Sbjct: 65 EGRTTVPAKKLLDIVKSLPEQSELKVEQQDNKWLLRSGRSRFSLATLPAEEYPNVEA-FQ 123
Query: 127 YDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVN 186
+ EFTL Q LK +++ FS+A QD+RYYLNGLL+ + + A+++DGHRL
Sbjct: 124 AEIEFTLKQGVLKSLIDATQFSMANQDVRYYLNGLLIETEGNMLRAIATDGHRLALSHRV 183
Query: 187 IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQXXXXXXXXXXXXXXXDGKFL 246
I+ + +I+PRK V + RLLE + + + I +N DG+F
Sbjct: 184 IEAQLPE-KQVIVPRKGVMEMARLLETDDLDIAISIGDNAIRATTSTTVFTSKLVDGRFP 242
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
DY+ V+ +K + +RN ++L R SI+SN+K +GVR+ ++ LKIT ++ +E+A
Sbjct: 243 DYRRVLPKGGDKIVIASRNHFKQALTRASILSNEKFRGVRIQLEAGLLKITANNPEQEEA 302
Query: 307 SEELEINYNGKDKNFIKFLIKIML--LKNKNSYDIQDTQESSYSASSIQ 353
E ++++YN I F + +L L N S D++ T S++ ++
Sbjct: 303 EEIIDVDYNNLPLE-IGFNVSYLLDVLNNLKSDDVRITLIDGNSSALLE 350
>UNIPROTKB|P0A988 [details] [associations]
symbol:dnaN species:83333 "Escherichia coli K-12"
[GO:0006974 "response to DNA damage stimulus" evidence=IEP]
[GO:0009360 "DNA polymerase III complex" evidence=IEA] [GO:0008408
"3'-5' exonuclease activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IPI] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA] InterPro:IPR001001
InterPro:IPR022634 InterPro:IPR022635 InterPro:IPR022637
Pfam:PF00712 Pfam:PF02767 Pfam:PF02768 PIRSF:PIRSF000804
SMART:SM00480 GO:GO:0005829 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0006974 EMBL:L10328 GO:GO:0008408 GO:GO:0006271 GO:GO:0003887
EMBL:J01602 GO:GO:0009360 EMBL:M19876 EMBL:M13822 EMBL:K02179
EMBL:X04341 PIR:A91510 RefSeq:NP_418156.1 RefSeq:YP_491734.1
PDB:1JQJ PDB:1JQL PDB:1MMI PDB:1OK7 PDB:1UNN PDB:1WAI PDB:2POL
PDB:2XUR PDB:3BEP PDB:3D1E PDB:3D1F PDB:3D1G PDB:3F1V PDB:3PWE
PDB:3Q4J PDB:3Q4K PDB:3Q4L PDB:3QSB PDBsum:1JQJ PDBsum:1JQL
PDBsum:1MMI PDBsum:1OK7 PDBsum:1UNN PDBsum:1WAI PDBsum:2POL
PDBsum:2XUR PDBsum:3BEP PDBsum:3D1E PDBsum:3D1F PDBsum:3D1G
PDBsum:3F1V PDBsum:3PWE PDBsum:3Q4J PDBsum:3Q4K PDBsum:3Q4L
PDBsum:3QSB ProteinModelPortal:P0A988 SMR:P0A988 DIP:DIP-36038N
IntAct:P0A988 PRIDE:P0A988 EnsemblBacteria:EBESCT00000003065
EnsemblBacteria:EBESCT00000003066 EnsemblBacteria:EBESCT00000003067
EnsemblBacteria:EBESCT00000003068 EnsemblBacteria:EBESCT00000003069
EnsemblBacteria:EBESCT00000003070 EnsemblBacteria:EBESCT00000017754
GeneID:12930541 GeneID:948218 KEGG:ecj:Y75_p3472 KEGG:eco:b3701
PATRIC:32122899 EchoBASE:EB0238 EcoGene:EG10242 eggNOG:COG0592
HOGENOM:HOG000071791 KO:K02338 OMA:DYNRVIP ProtClustDB:PRK05643
BioCyc:EcoCyc:EG10242-MONOMER BioCyc:ECOL316407:JW3678-MONOMER
EvolutionaryTrace:P0A988 Genevestigator:P0A988 TIGRFAMs:TIGR00663
Uniprot:P0A988
Length = 366
Score = 511 (184.9 bits), Expect = 5.3e-48, P = 5.3e-48
Identities = 116/348 (33%), Positives = 194/348 (55%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
E+ +L PLQ V + + LPIL N+L+ +S TD E+++ A+ +
Sbjct: 6 EREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEP 65
Query: 68 INIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P + + +
Sbjct: 66 GATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-DWQS 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+ EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL + I
Sbjct: 125 EVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPI 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQXXXXXXXXXXXXXXXDGKFLD 247
+ S S +I+PRK V L R+L+ +NP+ ++I +N DG+F D
Sbjct: 185 GQSLPSHS-VIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPD 243
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKAS 307
Y+ V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A
Sbjct: 244 YRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAE 303
Query: 308 EELEINYNGKDKNFIKFLIKIMLLKNKNSYDIQDTQES-SYSASSIQI 354
E L++ Y+G + I F + +L N+ ++ + + S SS+QI
Sbjct: 304 EILDVTYSGAEME-IGFNVSYVL-DVLNALKCENVRMMLTDSVSSVQI 349
>UNIPROTKB|Q9KVX5 [details] [associations]
symbol:dnaN "DNA polymerase III subunit beta"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR001001
InterPro:IPR022634 InterPro:IPR022635 InterPro:IPR022637
Pfam:PF00712 Pfam:PF02767 Pfam:PF02768 PIRSF:PIRSF000804
SMART:SM00480 GO:GO:0005737 GO:GO:0003677 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008408 GO:GO:0003887
GO:GO:0009360 eggNOG:COG0592 KO:K02338 OMA:DYNRVIP
ProtClustDB:PRK05643 TIGRFAMs:TIGR00663 PIR:F82376
RefSeq:NP_062597.1 ProteinModelPortal:Q9KVX5 SMR:Q9KVX5
DNASU:2615703 GeneID:2615703 KEGG:vch:VC0013 PATRIC:20079074
Uniprot:Q9KVX5
Length = 366
Score = 477 (173.0 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 108/353 (30%), Positives = 198/353 (56%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQ-ITTYTAVGYGNS 66
E++ ++ PLQ V + + LPIL N+L+ ++S +TD EV+ I+ T G +
Sbjct: 6 ERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLEGEFEA 65
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSK 126
+I V ARKF+DI R LP++ +T+ +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 G-SITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPASDFPNIE-DWQ 123
Query: 127 YDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVN 186
+ + +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q
Sbjct: 124 SEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVAQAQ 183
Query: 187 IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQXXXXXXXXXXXXXXXDGKFL 246
+ F+ II+PRK V L +LL+ E PV L+I ++ DG+F
Sbjct: 184 LGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTSKLVDGRFP 242
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
DY+ V+ K+ +L ++ R +I+SN+K +GVR+ + N ++IT ++ +E+A
Sbjct: 243 DYRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNGMRITANNPEQEEA 302
Query: 307 SEELEINYNGKDKNFIKFLIKIMLLKNKNSYDIQDTQESSYSASSIQILEGLE 359
E L++++ G+ I F + +L N+ + + S A++ ++E ++
Sbjct: 303 EELLDVSFEGEPIE-IGFNVSY-ILDVLNTLRCDNVRVSMSDANASALVENVD 353
>TIGR_CMR|VC_0013 [details] [associations]
symbol:VC_0013 "DNA polymerase III, beta chain" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR001001 InterPro:IPR022634
InterPro:IPR022635 InterPro:IPR022637 Pfam:PF00712 Pfam:PF02767
Pfam:PF02768 PIRSF:PIRSF000804 SMART:SM00480 GO:GO:0005737
GO:GO:0003677 GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0008408 GO:GO:0003887 GO:GO:0009360 eggNOG:COG0592 KO:K02338
OMA:DYNRVIP ProtClustDB:PRK05643 TIGRFAMs:TIGR00663 PIR:F82376
RefSeq:NP_062597.1 ProteinModelPortal:Q9KVX5 SMR:Q9KVX5
DNASU:2615703 GeneID:2615703 KEGG:vch:VC0013 PATRIC:20079074
Uniprot:Q9KVX5
Length = 366
Score = 477 (173.0 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 108/353 (30%), Positives = 198/353 (56%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQ-ITTYTAVGYGNS 66
E++ ++ PLQ V + + LPIL N+L+ ++S +TD EV+ I+ T G +
Sbjct: 6 ERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLEGEFEA 65
Query: 67 SINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSK 126
+I V ARKF+DI R LP++ +T+ +E + ++SG+S+F+L TL A ++P + + +
Sbjct: 66 G-SITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPASDFPNIE-DWQ 123
Query: 127 YDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVN 186
+ + +L+Q L+ ++ FS+A QD+RYYLNG+L + +V++DGHR+ Q
Sbjct: 124 SEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVAQAQ 183
Query: 187 IDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQXXXXXXXXXXXXXXXDGKFL 246
+ F+ II+PRK V L +LL+ E PV L+I ++ DG+F
Sbjct: 184 LGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTSKLVDGRFP 242
Query: 247 DYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKA 306
DY+ V+ K+ +L ++ R +I+SN+K +GVR+ + N ++IT ++ +E+A
Sbjct: 243 DYRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNGMRITANNPEQEEA 302
Query: 307 SEELEINYNGKDKNFIKFLIKIMLLKNKNSYDIQDTQESSYSASSIQILEGLE 359
E L++++ G+ I F + +L N+ + + S A++ ++E ++
Sbjct: 303 EELLDVSFEGEPIE-IGFNVSY-ILDVLNTLRCDNVRVSMSDANASALVENVD 353
>UNIPROTKB|Q8A3C1 [details] [associations]
symbol:BT_3033 "DNA topoisomerase IV subunit B"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 EMBL:AE015928
GenomeReviews:AE015928_GR GO:GO:0009295 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075156 KO:K02622
ProtClustDB:PRK05559 HSSP:P06982 OMA:VFESQTK RefSeq:NP_811945.1
ProteinModelPortal:Q8A3C1 GeneID:1074020 KEGG:bth:BT_3033
PATRIC:21061047 BioCyc:BTHE226186:GJXV-3097-MONOMER Uniprot:Q8A3C1
Length = 625
Score = 331 (121.6 bits), Expect = 6.7e-44, Sum P(3) = 6.7e-44
Identities = 94/314 (29%), Positives = 146/314 (46%)
Query: 615 DVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIG 674
+++ Y E F N GGTH + + I R I ++ +N +
Sbjct: 247 EIAFTHTGQYGEEYYSFVNGQHTTQGGTHQSAFKEHIARTIKEFFNKN---------MDY 297
Query: 675 EDIREGLTCVLSIKIPDPKFNSQTKNKLVSSE-------VRKPVEEIIIKTLFDFLQENP 727
DIR GL +++ + +P F SQTK KL S+ V K V + I + +FL +N
Sbjct: 298 TDIRNGLVAAIAVNVEEPIFESQTKTKLGSTNMTPGGVTVNKYVGDFIKLEVDNFLHKNA 357
Query: 728 GESKLICXXXXXXXXXXXXXXXXXXLTRKKNLIDDIELSTKLADCQ-----EKNPELCE- 781
++++ L R++ ++ + KL DC+ K + E
Sbjct: 358 DVAEVMQQKIQESEKERKAIAGVTKLARERAKKANLH-NRKLRDCRIHLNDPKGKGMEED 416
Query: 782 --LYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXX 839
++I EGDSA GS+ + RD QAV LRGK LN K ++ E
Sbjct: 417 SCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLN--SFGLTKKVVYENEEFNLLQAALN 474
Query: 840 XEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKI 899
E +E LRY+++I+ TDAD+DG HIR LL+TFF + P LI+ G++YI Q PL+++
Sbjct: 475 IED---GIEGLRYNKVIVATDADVDGMHIRLLLITFFLQFFPDLIKKGHVYILQTPLFRV 531
Query: 900 KYGNNE--CYLRDD 911
+ CY D+
Sbjct: 532 RNKKKTVYCYSEDE 545
Score = 199 (75.1 bits), Expect = 6.7e-44, Sum P(3) = 6.7e-44
Identities = 65/227 (28%), Positives = 101/227 (44%)
Query: 339 IQDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGT----GLHHFVFEILDNAIDESL 394
+ + Y+ +I+ L +E VR RP MYIG DG G++ + E++DN+IDE
Sbjct: 9 VDNNNAVEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGAHAEDGIYVLLKEVIDNSIDEFK 68
Query: 395 AGYCTKINVTIYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNS 454
KI +T+ GRG E V L+ GGK++ +
Sbjct: 69 MQAGKKIEITVEENLRVSVRDYGRGIPQG-----------KLVEAVSV-LNTGGKYDSKA 116
Query: 455 YKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKI 514
+K S GL+G+G+ VN LS ++ R+ K+ F G LQ + +
Sbjct: 117 FKKSVGLNGVGVKAVNALSSRFEVRSYRDGKVRIATFSKGNLQTDVTQ------------ 164
Query: 515 IGDTNKQ-GTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCI 560
DT + GT I F D +F N F E ++ +R ++LN G+ I
Sbjct: 165 --DTEEDNGTFIFFEPDNTLFVNYCFKPEFIETMLRNYTYLNTGLAI 209
Score = 59 (25.8 bits), Expect = 6.7e-44, Sum P(3) = 6.7e-44
Identities = 19/70 (27%), Positives = 37/70 (52%)
Query: 1080 INYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMG 1139
+N + + N I R+KGLGE++P + ++ + +R L +V ++ + ++ MG
Sbjct: 547 VNAINELSPNPEIT-RFKGLGEISPDE-FKHFIGKDMR-LEQVTLRKTDAVKELLEFYMG 603
Query: 1140 DNVELRRKFI 1149
N R+ FI
Sbjct: 604 KNTMERQNFI 613
>TIGR_CMR|ECH_1009 [details] [associations]
symbol:ECH_1009 "DNA polymerase III, beta subunit"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001001 InterPro:IPR022634
InterPro:IPR022635 InterPro:IPR022637 Pfam:PF00712 Pfam:PF02767
Pfam:PF02768 PIRSF:PIRSF000804 SMART:SM00480 GO:GO:0005737
GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006260
GO:GO:0008408 GO:GO:0003887 GO:GO:0009360 eggNOG:COG0592
HOGENOM:HOG000071791 KO:K02338 OMA:DYNRVIP ProtClustDB:PRK05643
TIGRFAMs:TIGR00663 RefSeq:YP_507795.1 ProteinModelPortal:Q2GFI8
STRING:Q2GFI8 GeneID:3927321 KEGG:ech:ECH_1009 PATRIC:20577392
BioCyc:ECHA205920:GJNR-1012-MONOMER Uniprot:Q2GFI8
Length = 369
Score = 371 (135.7 bits), Expect = 5.7e-33, P = 5.7e-33
Identities = 84/313 (26%), Positives = 171/313 (54%)
Query: 9 KNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSI 68
K+ +L L + SIVEK++ + +LS + + ++I STD ++ I + + N +
Sbjct: 7 KDKLLQALSYINSIVEKRHSIVVLSCVRIEARDQEIKLTSTDLDISIIA-SITAHVNVNG 65
Query: 69 NIIVAARKFIDILRSLPETEKVTIYI-ENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKY 127
++V+A+ DI++ LP ++ +I E+ + IK G+++F L +D +++PI+ N++
Sbjct: 66 VVVVSAQLLYDIVKKLPNDIEIKFFIGEDGRLTIKCGRTEFFLPVVDIEKFPIIE-NNEL 124
Query: 128 DFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNI 187
+FTL L + F+I+ ++ R+ LNGL + + ++DGHRL+ +++
Sbjct: 125 QNKFTLQVSELVSLFGKTKFAISIEESRFNLNGLYVHTSNNILCCAATDGHRLSLTKLSQ 184
Query: 188 DKKFSSCSDIIIPRKTVFTLQRLLENKENP--VELKISNNQXXXXXXXXXXXXXXXDGKF 245
+ S II+P+KTV + +++ + + + +S+ + DG F
Sbjct: 185 SQNVLSNFGIIVPKKTVNEILKIVSHGSGNDLISISLSDRKICFEYKEYILISKVIDGTF 244
Query: 246 LDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREK 305
DY +I ++K+ L+ L ++ R+S++ DK+K ++L N L ++ +SS++
Sbjct: 245 PDYNSIIPRSHDKNVLIESETLSNAIDRVSVVVFDKVKVIKLRFVSNKLILSAASSDQGD 304
Query: 306 ASEELEINYNGKD 318
A EELE++Y+G+D
Sbjct: 305 AREELEVDYSGED 317
>TIGR_CMR|SPO_0150 [details] [associations]
symbol:SPO_0150 "DNA polymerase III, beta subunit"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR001001 InterPro:IPR022634
InterPro:IPR022635 InterPro:IPR022637 Pfam:PF00712 Pfam:PF02767
Pfam:PF02768 PIRSF:PIRSF000804 SMART:SM00480 GO:GO:0005737
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006260
GO:GO:0008408 GO:GO:0003887 GO:GO:0009360 HOGENOM:HOG000071791
KO:K02338 ProtClustDB:PRK05643 TIGRFAMs:TIGR00663 OMA:AINISYF
RefSeq:YP_165422.1 ProteinModelPortal:Q5LWV3 GeneID:3195527
KEGG:sil:SPO0150 PATRIC:23373547 Uniprot:Q5LWV3
Length = 372
Score = 371 (135.7 bits), Expect = 5.7e-33, P = 5.7e-33
Identities = 86/333 (25%), Positives = 177/333 (53%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYG 64
++ E+ A+L + S+VE++N +PIL+N+L+ E F +TD ++++
Sbjct: 3 ISIERGALLKAVAQAQSVVERRNTIPILANVLIEAEGEGAQFRATDLDIEVVDKAPAMIE 62
Query: 65 NSSINIIVAARKFIDILRSLPETEKVTIYIENK--HMFIKSGKSKFTLQTLDAKEYPIMT 122
+ V+A +I+R LP+ VT+ + + +++G+S F+L TL +++P+M
Sbjct: 63 RAGATT-VSATTLHEIVRKLPDGALVTLTADAAAGRLTVEAGRSNFSLATLPREDFPVMA 121
Query: 123 LNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQK----KNIIAVSSDGH 178
+S+Y FT + L+ + + F+I+ ++ RYYLNG+ + K + V++DGH
Sbjct: 122 -SSEYQSNFTANAAVLRRLFDKSKFAISTEETRYYLNGVYMHVADGDGGKVLRCVATDGH 180
Query: 179 RLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQXXXXXXXXXXXX 238
RL ++ + +I+PRKTV L++LL++ E + + +S +
Sbjct: 181 RLARIDADLPAGATDMPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKVRFATPDITLTS 240
Query: 239 XXXDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
DG F DY VI + V+ ++ +++ R++ +S+++ + V+L + + L ++V
Sbjct: 241 KVIDGTFPDYTRVIPQANTRRLEVDASEFAKAVDRVATVSSERSRAVKLQLDEDKLVLSV 300
Query: 299 SSSNREKASEELEINYNGK--DKNF-IKFLIKI 328
++ + A EEL + Y+ + + F K+L++I
Sbjct: 301 NAPDSGAAEEELAVAYSDERLEIGFNAKYLLEI 333
>TIGR_CMR|GSU_0001 [details] [associations]
symbol:GSU_0001 "DNA polymerase III, beta subunit"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001001 InterPro:IPR022634
InterPro:IPR022635 InterPro:IPR022637 Pfam:PF00712 Pfam:PF02767
Pfam:PF02768 PIRSF:PIRSF000804 SMART:SM00480 GO:GO:0005737
GO:GO:0003677 GO:GO:0006260 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0008408 GO:GO:0003887 GO:GO:0009360 HOGENOM:HOG000071791
KO:K02338 OMA:DYNRVIP ProtClustDB:PRK05643 TIGRFAMs:TIGR00663
RefSeq:NP_951063.1 ProteinModelPortal:Q74H91 GeneID:2686559
KEGG:gsu:GSU0001 PATRIC:22022739 BioCyc:GSUL243231:GH27-1-MONOMER
Uniprot:Q74H91
Length = 372
Score = 349 (127.9 bits), Expect = 1.3e-30, P = 1.3e-30
Identities = 97/334 (29%), Positives = 178/334 (53%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQI-TTY-TAVGYGN 65
+++ LQ + IVEK+N +PILSN+L+ ++I +TD EV + ++Y T V
Sbjct: 6 DRDTFSRALQKIQGIVEKRNTMPILSNVLIEALEDRIELTATDLEVGMKSSYPTTVA--- 62
Query: 66 SSINIIVAARKFIDILRSLPETEKVTIYIE-NKHMFIKSGKSKFTLQTLDAKEYPIMTLN 124
S I V+A+K +I++ LP+ E ++ + N ++ I+ GK+KFT+ L ++E+P
Sbjct: 63 SQGKITVSAKKLYEIVKELPD-ETISFLTKANDYVEIRCGKAKFTIVGLSSEEFPYFPKV 121
Query: 125 SKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQK---KNIIA-VSSDGHRL 180
++ F + L ++ ++I + +Y LNG + + ++I+ V++DGHRL
Sbjct: 122 NEESF-IRIESGLLADMIEKTSYAICFDETKYNLNGTFVKASEEDGRSILRMVATDGHRL 180
Query: 181 TYYQVNIDKKFSS--CSDIIIPRKTVFTLQRLLENKENPVELKISNNQXXXXXXXXXXXX 238
+ Q + S +I P+K +F L+++ E + + L +N
Sbjct: 181 SITQREFNGAVSPEMAKGVIFPKKGIFELKKMCEEESTQLSLGFLDNSAVIVKGNTVVVM 240
Query: 239 XXXDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV 298
DG+F DY V+ ++ V R+ SL+R+SI+S++K KG+++ I+ + + +
Sbjct: 241 RLVDGEFPDYTRVVPVANDRIVTVARDPFFHSLRRMSILSSEKFKGIKMDIQESGM--VI 298
Query: 299 SSSNRE--KASEELEINYNGKDKNFIKFLIKIML 330
SSSN E +ASEEL+ + G D I+F K ++
Sbjct: 299 SSSNPELGEASEELDAVFAG-DAISIRFNAKYLI 331
>TIGR_CMR|APH_1097 [details] [associations]
symbol:APH_1097 "DNA polymerase III, beta subunit"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR001001 InterPro:IPR022634
InterPro:IPR022635 InterPro:IPR022637 Pfam:PF00712 Pfam:PF02767
Pfam:PF02768 PIRSF:PIRSF000804 SMART:SM00480 GO:GO:0005737
GO:GO:0003677 GO:GO:0006260 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0008408 GO:GO:0003887 GO:GO:0009360 eggNOG:COG0592
HOGENOM:HOG000071791 KO:K02338 OMA:DYNRVIP ProtClustDB:PRK05643
TIGRFAMs:TIGR00663 RefSeq:YP_505645.1 ProteinModelPortal:Q2GJ06
STRING:Q2GJ06 GeneID:3931278 KEGG:aph:APH_1097 PATRIC:20950952
BioCyc:APHA212042:GHPM-1103-MONOMER Uniprot:Q2GJ06
Length = 375
Score = 315 (115.9 bits), Expect = 5.6e-27, P = 5.6e-27
Identities = 78/311 (25%), Positives = 151/311 (48%)
Query: 12 ILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINII 71
+L L V S++E++N + +LS + + I F STD ++ I + +
Sbjct: 18 LLQALNYVSSVIERRNSIAVLSCVRIEAKGSVIEFTSTDLDISIEACVQANVATGGV-AV 76
Query: 72 VAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEF 131
+A+ DI+R L V + + + + G ++F L + +++P + S D F
Sbjct: 77 ASAQLLYDIVRKLSGEADVRFKLNDGKLLVACGNARFYLHVISPEKFPDIE-GSSLDCGF 135
Query: 132 TLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKF 191
+ +L +LN FS++ ++ RY L G+ + + V++DGHRL+ +++ +
Sbjct: 136 DIPATSLAELLNKTKFSMSVEESRYNLRGVYFHVDDEMLCCVATDGHRLSLAKISKPEGL 195
Query: 192 SSCSDIIIPRKTVFTLQRLLEN----KENPVELKISNNQXXXXXXXXXXXXXXXDGKFLD 247
S +IIPRKTV + +++ + V + ISN + DG F D
Sbjct: 196 HSGIAVIIPRKTVNEVLKIIGHGGGDAAQMVSVGISNRKICFRYKGYFMVSKVLDGTFPD 255
Query: 248 YKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKAS 307
Y +I + S ++ + L ++ R+S++ DK+K ++L L ++ +SS++ AS
Sbjct: 256 YAAIIPTECGNSVSIDASVLQSAVDRVSVVVFDKVKAIKLSFTEGKLVLSSASSDQGDAS 315
Query: 308 EELEINYNGKD 318
EEL ++Y G +
Sbjct: 316 EELSVDYEGDE 326
>TIGR_CMR|NSE_0170 [details] [associations]
symbol:NSE_0170 "DNA polymerase III, beta subunit"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001001 InterPro:IPR022634
InterPro:IPR022635 InterPro:IPR022637 Pfam:PF00712 Pfam:PF02767
Pfam:PF02768 PIRSF:PIRSF000804 SMART:SM00480 GO:GO:0005737
GO:GO:0003677 GO:GO:0006260 GO:GO:0008408 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG0592 HOGENOM:HOG000071791 KO:K02338 ProtClustDB:PRK05643
TIGRFAMs:TIGR00663 RefSeq:YP_506066.1 ProteinModelPortal:Q2GEN0
STRING:Q2GEN0 GeneID:3931522 KEGG:nse:NSE_0170 PATRIC:22680439
OMA:AINISYF BioCyc:NSEN222891:GHFU-202-MONOMER Uniprot:Q2GEN0
Length = 372
Score = 284 (105.0 bits), Expect = 9.7e-25, Sum P(2) = 9.7e-25
Identities = 86/340 (25%), Positives = 163/340 (47%)
Query: 5 VNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGY- 63
V +++A+ L ++S+ +K+ + LS++ V + +TD E+ +T + +G
Sbjct: 9 VTVQQDALTRILANLVSVSTRKSTIAYLSHVRVRFTGTSVELTTTDNELSLTD-SLLGIE 67
Query: 64 GNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTL 123
G I V A + +I++ LP V + IE ++ ++S + +F+L LDAK +P+++
Sbjct: 68 GVIDAVISVDAFRLYEIVKRLPTDVGVVLSIEKNNLVVRSRRIEFSLPYLDAKHFPLISE 127
Query: 124 NSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYY 183
K + + ++ + N V F+ + + R +LNG+ + I ++D HRL
Sbjct: 128 EEKIG-QINFAVDEIRSLFNKVRFATSTESTRQHLNGVYFESDGEKITVAATDVHRLAV- 185
Query: 184 QVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQXXXXXXXXXXXXXXXD- 242
+ KK IIP+KTV + +L KE VEL + +
Sbjct: 186 -ATLMKKTGLKFSCIIPKKTVLEMIKLSSGKE--VELFLHGREYVSRIKMVFGGVRLNSK 242
Query: 243 ---GKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
G F ++ VI + ++ S +R L S++R+ ++S D+ + + + IK L + S
Sbjct: 243 LIAGTFPNFAAVIPHSFKSSLTFDRKALATSIERVGLVSPDQSRAISIGIKGKQLYLDAS 302
Query: 300 SSNREKASEELEINYNGKDKNFIKF----LIKIML-LKNK 334
+S+ E LE+N + ++ I F L+ I+L L NK
Sbjct: 303 NSDASFGRESLELNEDIGEEISIYFNHIYLLDILLALDNK 342
Score = 37 (18.1 bits), Expect = 9.7e-25, Sum P(2) = 9.7e-25
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 951 KTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQF 988
+++E+ + + I I + D++L LD +E +F
Sbjct: 311 ESLELNEDIGEEISIYFNHIYLLDILLALDNKEVTMKF 348
>TIGR_CMR|BA_0002 [details] [associations]
symbol:BA_0002 "DNA polymerase III, beta subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001001 InterPro:IPR022634
InterPro:IPR022635 InterPro:IPR022637 Pfam:PF00712 Pfam:PF02767
Pfam:PF02768 PIRSF:PIRSF000804 SMART:SM00480 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0008408 GO:GO:0003887 GO:GO:0009360 KO:K02338
OMA:DYNRVIP ProtClustDB:PRK05643 TIGRFAMs:TIGR00663
HOGENOM:HOG000071792 RefSeq:NP_842574.1 RefSeq:YP_016605.1
RefSeq:YP_026293.1 ProteinModelPortal:Q81W34 DNASU:1083862
EnsemblBacteria:EBBACT00000008884 EnsemblBacteria:EBBACT00000013812
EnsemblBacteria:EBBACT00000022347 GeneID:1083862 GeneID:2815658
GeneID:2847981 KEGG:ban:BA_0002 KEGG:bar:GBAA_0002 KEGG:bat:BAS0002
BioCyc:BANT260799:GJAJ-2-MONOMER BioCyc:BANT261594:GJ7F-2-MONOMER
Uniprot:Q81W34
Length = 379
Score = 284 (105.0 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 84/347 (24%), Positives = 168/347 (48%)
Query: 8 EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSS 67
+K+ ++ +Q V+ V + +PIL+ I V E ++ +D ++ I ++ V
Sbjct: 6 QKDYLVRSVQDVMKAVSFRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVEEDGKE 65
Query: 68 I-------NIIVAARKFIDILRSLPETEKVTIYIENKHMFIK--SGKSKFTLQTLDAKEY 118
I +I++ A+ F +I++ LP+ E V I +EN H+ K SGKS+F L LD+ EY
Sbjct: 66 IVEVKQSGSIVLQAKYFSEIVKKLPK-ETVEISVEN-HLMTKITSGKSEFNLNGLDSAEY 123
Query: 119 PIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGH 178
P++ ++ F + LK ++ F+++ + R L G+ + +++D H
Sbjct: 124 PLLPQIEEHHV-FKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELTCIATDSH 182
Query: 179 RLTYYQVNIDKKFSSC-SDIIIPRKTVFTLQRLLENKENPVELKISNNQXXXXXXXXXXX 237
RL + I+ ++++IP K++ L ++L+ E V++ I+ Q
Sbjct: 183 RLALRKAKIEGIVDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFRTKHLLFF 242
Query: 238 XXXXDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGV-RL-VIKPNYLK 295
+G + D +I + + VN + L+++ R S+++ D V +L ++ L+
Sbjct: 243 SRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLSTLEQAMLE 302
Query: 296 ITVSSSNREKASEELEINYNGKDKNFIKFLIKIML--LKNKNSYDIQ 340
I+ +S K EE++ ++ I F K M+ LK +S +I+
Sbjct: 303 ISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEIK 349
>UNIPROTKB|Q8EYL9 [details] [associations]
symbol:LA_4194 "DNA gyrase subunit B" species:189518
"Leptospira interrogans serovar Lai str. 56601" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 KO:K02470
Gene3D:3.40.50.670 EMBL:AE010300 GenomeReviews:AE010300_GR
HSSP:P06786 RefSeq:NP_714374.1 ProteinModelPortal:Q8EYL9
GeneID:1153536 KEGG:lil:LA_4194 PATRIC:22389227
HOGENOM:HOG000040411 OMA:EATIESK ProtClustDB:CLSK575166
BioCyc:LINT189518:GJBB-3320-MONOMER Uniprot:Q8EYL9
Length = 711
Score = 271 (100.5 bits), Expect = 5.0e-21, Sum P(4) = 5.0e-21
Identities = 76/283 (26%), Positives = 140/283 (49%)
Query: 625 NENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCV 684
N+N L + N+I GG+ + L + I + K + KK K D+R
Sbjct: 344 NKN-LTWVNSIFAPQGGSAIEYLENRICDEVRKKSQIVALEKKLKTSSTRNDVRNCFHMY 402
Query: 685 LSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXX 744
++ ++ +P+F SQ K+ L++ ++ + + + K L F+++ G + I
Sbjct: 403 VNARLLNPRFKSQDKSYLIN-DLNEDIRNAVDKHLDKFIKKT-GLLEEIKLQMEKRTQLK 460
Query: 745 XXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQA 804
L +K + ++ +L ++ +P L++ EGDSA ++ R+ +
Sbjct: 461 AFEDAQKGL-KKASRMNIPKLMPPTG--KQGDPGRV-LFVAEGDSAIAGLRPARNPKLHG 516
Query: 805 VLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADID 864
+ PLRGK LN + K I +E+ +Q +L++L Y ++ I+TDAD D
Sbjct: 517 LFPLRGKPLNCKGLSIAKAIANEELKNIVAIVGLPLDQKVKSLDELNYEKVSIITDADFD 576
Query: 865 GAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKI--KYGNNE 905
G IR+L+L+FFY P+L E G+I+I+ PLY++ K+G+ +
Sbjct: 577 GYAIRSLMLSFFYEYWPELFELGFIHISSAPLYEVDVKFGDKK 619
Score = 56 (24.8 bits), Expect = 5.0e-21, Sum P(4) = 5.0e-21
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 336 SYDIQDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHF 381
S D +E S + + L +E VR R M++G S T HF
Sbjct: 2 STDKTKVKEKSSQERNFKKLSNVEHVRMRTGMWLGQNSASTFEQHF 47
Score = 49 (22.3 bits), Expect = 5.0e-21, Sum P(4) = 5.0e-21
Identities = 21/63 (33%), Positives = 29/63 (46%)
Query: 1093 KQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKI-FMTLMGDNVELRRKFIEL 1151
K+R KGLGE G+ E + C+ K+ I + A KI + D E RR I
Sbjct: 648 KKRNKGLGET--GK--EAMKFAVEECMTKITIGNKKEASKIQSLWFHKDYAEQRRDAISE 703
Query: 1152 NAL 1154
A+
Sbjct: 704 YAM 706
Score = 43 (20.2 bits), Expect = 5.0e-21, Sum P(4) = 5.0e-21
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 437 AEIVMTELHAGGKFNKNSYKIS-GGLHGIGLSCVNGLSRFLQL-TIN 481
AE V L G F+ + + G +G+G+S V +S + ++ T+N
Sbjct: 127 AEGVYLHLMYGENFDDHVKQDHVAGQNGVGISLVRMVSNYFKVKTVN 173
Score = 42 (19.8 bits), Expect = 2.3e-19, Sum P(3) = 2.3e-19
Identities = 9/58 (15%), Positives = 28/58 (48%)
Query: 275 SIISNDKLKGVRLVIKPNYLKITVSSSNREKASEELEINYNGKDKNFIKFLIKIMLLK 332
++++ D++ + ++K ++ + +++E +E N K N + + L+K
Sbjct: 219 NLLTKDQIDKLSPLLKKTNMQELIEKASKEDHGTSVEFELNPKYFNNLDISFNVDLMK 276
>TIGR_CMR|CHY_2709 [details] [associations]
symbol:CHY_2709 "DNA polymerase III, beta subunit"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR001001
InterPro:IPR022634 InterPro:IPR022635 InterPro:IPR022637
Pfam:PF00712 Pfam:PF02767 Pfam:PF02768 PIRSF:PIRSF000804
SMART:SM00480 GO:GO:0005737 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006260 GO:GO:0008408 GO:GO:0003887
GO:GO:0009360 eggNOG:COG0592 KO:K02338 OMA:DYNRVIP
TIGRFAMs:TIGR00663 RefSeq:YP_361491.1 ProteinModelPortal:Q3A8P3
STRING:Q3A8P3 GeneID:3728811 KEGG:chy:CHY_2709 PATRIC:21278439
HOGENOM:HOG000071792 BioCyc:CHYD246194:GJCN-2707-MONOMER
Uniprot:Q3A8P3
Length = 371
Score = 258 (95.9 bits), Expect = 1.4e-19, P = 1.4e-19
Identities = 83/325 (25%), Positives = 155/325 (47%)
Query: 23 VEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFI-DIL 81
V K+ P+L+ IL N + + T T++Q++ T+ +V A KF+ DI+
Sbjct: 21 VSTKSPFPVLTGILFEANEQNSTITLTATDLQMSVETSFPAKIIEGGSVVLASKFLGDII 80
Query: 82 RSLPETEKVTIYIENK-HMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFE-FTLSQKTLK 139
+ LPETE + Y+ N+ IK G S+ ++ T +E+P D E F +S +
Sbjct: 81 KKLPETELMFEYLPNEGKCVIKYGASEVSVATYRPEEFP--KNEEVIDGESFYISGEEFS 138
Query: 140 CILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCS-DII 198
+ V F+ + R G+L + + V+SD HRL + + I ++ + + ++I
Sbjct: 139 TFIKQVLFATGTDESRPVFTGVLFEIVGQELRLVASDTHRLAFRKTFIKREDTGKNINVI 198
Query: 199 IPRKTVFTLQRLLENKENPVELKISNNQXXXXXXXXXXXXXXXDGKFLDYKYVISNKYEK 258
IP +T+ R+ + + +KIS Q +G+F +Y+ VI ++
Sbjct: 199 IPSRTLHEAVRIFGTVDELL-IKISEGQVEFSGNGIKLTSRLIEGQFPNYQQVIPTAFKS 257
Query: 259 SFLVNRNKLLRSLQRISIISNDKLKG--VRLVIKPNYLKITVSSSNREKASEELEINYNG 316
+ L+N+ L SL+R +++ DK K + ++ + IT S S EEL I+ G
Sbjct: 258 NILINKKYFLDSLERAALLPRDKDKTPVAKFYLERENMIIT-SQSESGSIREELPISLEG 316
Query: 317 KDKNFI---KFLIKIM-LLKNKNSY 337
++ ++LI ++ +L+ + Y
Sbjct: 317 EEFTVAFNTRYLIDVLKVLETEEIY 341
>DICTYBASE|DDB_G0279737 [details] [associations]
symbol:top2mt "DNA topoisomerase II" species:44689
"Dictyostelium discoideum" [GO:0006265 "DNA topological change"
evidence=IEA;IC;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0006259 "DNA metabolic process" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA]
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006261 "DNA-dependent
DNA replication" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 dictyBase:DDB_G0279737 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 EMBL:AAFI02000032 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
EMBL:D82024 PIR:T30577 RefSeq:XP_641531.1 ProteinModelPortal:P90520
STRING:P90520 EnsemblProtists:DDB0214907 GeneID:8622204
KEGG:ddi:DDB_G0279737 OMA:MQDRRER ProtClustDB:PTZ00108
Uniprot:P90520
Length = 1284
Score = 274 (101.5 bits), Expect = 3.8e-18, Sum P(3) = 3.8e-18
Identities = 121/481 (25%), Positives = 205/481 (42%)
Query: 438 EIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSR-FLQLTINRNKKIHYMEFRYGVL 496
E+VM L +G FN + K+ GG +G G N S+ F T++++ Y + R+
Sbjct: 231 EMVMGNLMSGSNFNDSELKVVGGRNGFGAKLTNIFSKEFTVETVDKSSGKKYFQ-RWS-- 287
Query: 497 QNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVD-EKI-FSNI--EFHYEILKKRIRELS 552
N + I ++PI G+ TKI F D EK ++ + +++++R+ +++
Sbjct: 288 -NNMGDRSEPI-ITPI---GEGESDYTKITFKPDLEKFKIKSLWDDNILQLMERRLYDIA 342
Query: 553 FLNNGVCITLIDERXXXXXXXXXXXXTSGFVSYINKS-KLVVHPTIFQAXXXXXXXXXXX 611
N + +TL +R + ++N S K + ++
Sbjct: 343 GCNTELMVTLNGKRLNYNFQSYVKL----YEHHLNNSTKREDNEEQYREESFEFGEISPR 398
Query: 612 XXXDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIE 671
+ + + + + F N+I V GGTH+ L I R Y+ E K S +E
Sbjct: 399 WKIGIGLSETGQFTQ--VSFVNSINTVKGGTHVNFLADQIVR----YVGEKLKKKHSDLE 452
Query: 672 IIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVR-KPVEEIIIKTLFDFLQENPGES 730
I +I+ L ++ + +P F+SQ+K L + + EI L F++ S
Sbjct: 453 IRPMNIKHHLALFVNCLVDNPSFDSQSKETLTTKPMLFGSTPEIPESLLAQFVKN----S 508
Query: 731 KLICXXXXXXXXXXXXXXXXXXLTR--KKNLIDDIELSTKLADCQE----KNPELCELYI 784
K+I R K LI I +KL D K+ E C L I
Sbjct: 509 KIIERVAGWALMKQKADLIHSTSGRQSKTTLIKSI---SKLDDANWAGGLKSKE-CTLII 564
Query: 785 VEGDSAGGSVKQGRD---RRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXX----XXX 837
EGDSA G R V PLRGK+LN+ ++++ +E+
Sbjct: 565 TEGDSAKSLALAGLSVVGRNSYGVFPLRGKLLNVRDVASKQLLSNEEINNLTTILGLSHK 624
Query: 838 XXXEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLY 897
+ DE ++E LRY R++IM D D DG+HI+ L++ F + P L++ G++ P+
Sbjct: 625 NSYDTDE-SMEDLRYGRVMIMADQDHDGSHIKGLVMNFIHYFWPNLLKRGFLVEFVTPII 683
Query: 898 K 898
K
Sbjct: 684 K 684
Score = 51 (23.0 bits), Expect = 3.8e-18, Sum P(3) = 3.8e-18
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 255 KYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASEELEINY 314
K+ K + N N + + IS IS ++ + ++L I ++SN + S +L N
Sbjct: 18 KFGKGIINNLNNKSKQVGIISFISQSSIQSQSSIQSQSFLSIN-NNSNNKYFSTKLNKNE 76
Query: 315 NGKDK 319
+K
Sbjct: 77 KISEK 81
Score = 44 (20.5 bits), Expect = 2.0e-17, Sum P(3) = 2.0e-17
Identities = 28/110 (25%), Positives = 44/110 (40%)
Query: 263 NRNKLLRSLQRIS--IISNDKLKGVRLVIKPNYLKITVSSSNREKASEELEINYNGKDKN 320
N +K L + + II+N K ++ I + ++ S + ++ L IN N +K
Sbjct: 8 NNHKNLTNYLKFGKGIINNLNNKSKQVGIISFISQSSIQSQSSIQSQSFLSINNNSNNKY 67
Query: 321 FIKFLIKIMLLKNKNSYDIQDTQESSYSASSIQILEGLEAVRKRPEMYIG 370
F L NKN I + + Q E V RP+ YIG
Sbjct: 68 FSTKL-------NKNE-KISEKTTTRKIEDIYQKKTPTEHVLLRPDSYIG 109
Score = 43 (20.2 bits), Expect = 2.5e-17, Sum P(3) = 2.5e-17
Identities = 22/89 (24%), Positives = 43/89 (48%)
Query: 245 FLDYKYVISNKYEKSFLVNRNKLLR---SLQRISIISNDKLKGVRLVIKPN-YL----KI 296
FL +NKY + L N+N+ + + ++I I K ++++P+ Y+ KI
Sbjct: 56 FLSINNNSNNKYFSTKL-NKNEKISEKTTTRKIEDIYQKKTPTEHVLLRPDSYIGTIEKI 114
Query: 297 -----TVSSSNREKASEELEINYNGKDKN 320
+S+S K + +E+N + +KN
Sbjct: 115 EDDMWVLSNSMFNKEKKTIELNNDNNEKN 143
Score = 43 (20.2 bits), Expect = 2.5e-17, Sum P(3) = 2.5e-17
Identities = 31/142 (21%), Positives = 58/142 (40%)
Query: 9 KNAILHPLQMVISIVEK-KNILPILSNILVCKNSEKISFLSTDTE--VQITTYTAVGYGN 65
++ +L P I +EK ++ + +LSN + K + I + + E V+ TT T
Sbjct: 98 EHVLLRP-DSYIGTIEKIEDDMWVLSNSMFNKEKKTIELNNDNNEKNVESTTTTTTKTNK 156
Query: 66 SSINIIVAARK-FIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLN 124
+ I + +I L + + E + +NK + K F ++ E I +N
Sbjct: 157 KPLTYIHPIKATYIPGLLKIYD-EILVNAADNKK---RDSKMSFIKVEINPNENSISIMN 212
Query: 125 SKYDFEFTLSQKTLKC-ILNMV 145
+ Q T C ++ MV
Sbjct: 213 DGKGIPVVMHQ-TENCYVVEMV 233
Score = 37 (18.1 bits), Expect = 3.8e-18, Sum P(3) = 3.8e-18
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 990 KKIIKKLNDSNIEIIVEF 1007
K +IK +SN E V F
Sbjct: 1039 KDVIKSFQESNTENSVHF 1056
>TIGR_CMR|BA_2684 [details] [associations]
symbol:BA_2684 "DNA polymerase III, beta subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001001 InterPro:IPR022634
InterPro:IPR022635 InterPro:IPR022637 Pfam:PF00712 Pfam:PF02767
Pfam:PF02768 PIRSF:PIRSF000804 SMART:SM00480 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0008408 GO:GO:0003887 GO:GO:0009360 KO:K02338
TIGRFAMs:TIGR00663 HOGENOM:HOG000071792 RefSeq:NP_845041.1
RefSeq:YP_019325.1 RefSeq:YP_028759.1 ProteinModelPortal:Q81PW0
DNASU:1084621 EnsemblBacteria:EBBACT00000011557
EnsemblBacteria:EBBACT00000013833 EnsemblBacteria:EBBACT00000019323
GeneID:1084621 GeneID:2817064 GeneID:2848911 KEGG:ban:BA_2684
KEGG:bar:GBAA_2684 KEGG:bat:BAS2499 OMA:DGHTEIQ
ProtClustDB:PRK06673 BioCyc:BANT260799:GJAJ-2564-MONOMER
BioCyc:BANT261594:GJ7F-2658-MONOMER Uniprot:Q81PW0
Length = 376
Score = 237 (88.5 bits), Expect = 6.5e-17, P = 6.5e-17
Identities = 75/341 (21%), Positives = 158/341 (46%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ +VN K+ L V + K I+PILS I + + I+ +++++ + I +
Sbjct: 1 MEFIVN-HKH-FTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIP 58
Query: 61 VGYGNSSIN-------IIVAARKFIDILRSLPETEKVTIYIENKHMF-IKSGKSKFTLQT 112
+ I I+V A+ FI+I++ +P + I +N+ I+SG+ L
Sbjct: 59 SAIDDEQITTILQAGTIVVPAKYFIEIIKKMPSD--IVIKSKNEQTITIQSGEITLNLNG 116
Query: 113 LDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIA 172
A E+P + + E + K L F++A+ + R+ L G+ + +I
Sbjct: 117 FPANEFPNVPQIDDHT-EIQIETKQLIDAFKQTVFAVAKNESRHVLTGVHIELDHNKLIC 175
Query: 173 VSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQXXXXXX 232
++D HRL + I + + I+P T+ L +L+ + V + +S +
Sbjct: 176 AATDSHRLAIRETLISTNMKA--NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTFG 233
Query: 233 XXXXXXXXXDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKG-VRL-VIK 290
+GK+ + +I N+++ ++R ++L+ + R S+++++ V L ++
Sbjct: 234 TTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIVN 293
Query: 291 PNYLKITVSSSNREKASEELEINY-NGKDKNFIKFLIKIML 330
+ ++I+ ++S K SE+ +I+ GK + I F + ML
Sbjct: 294 ESTIQISSNASQIGKISEKQQIDVIQGKKQLNISFDGRFML 334
>UNIPROTKB|Q7RJ69 [details] [associations]
symbol:PY03394 "DNA topoisomerase 2" species:73239
"Plasmodium yoelii yoelii" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 KO:K03164 EMBL:AABL01000973
RefSeq:XP_731396.1 HSSP:P06786 ProteinModelPortal:Q7RJ69
STRING:Q7RJ69 GeneID:3830618 KEGG:pyo:PY03394
EuPathDB:PlasmoDB:PY03394 Uniprot:Q7RJ69
Length = 1489
Score = 244 (91.0 bits), Expect = 6.3e-16, Sum P(2) = 6.3e-16
Identities = 74/284 (26%), Positives = 138/284 (48%)
Query: 631 FTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIP 690
F N+I GGTH++ + + + +N ++ K +EI IR L ++ I
Sbjct: 354 FVNSICTTKGGTHVSYI---VDQLLNSLSKKANAKNKGGMEIKAGHIRNHLWVFVNCLIV 410
Query: 691 DPKFNSQTKNKLVSSEVRKPVE-EIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXXX 749
+P F+SQTK L + + + + + KT+ + L+ + + L+
Sbjct: 411 NPTFDSQTKETLTTKQAKFGSKCTLTDKTINNVLKSSILSNILLWAQAKAQVELRKKMKA 470
Query: 750 XXXLTRKKNL-IDDIELSTKLADCQEKNPELCELYIVEGDSA-----GGSVKQGRDRRFQ 803
R++ + I +E + D K + C L + EGDSA G GRDR
Sbjct: 471 GSSKARERIIGIPKLEDAN---DAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDR--Y 525
Query: 804 AVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXX-XEQDEFNLEKLRYHRIIIMTDAD 862
V PL+GK+LN+ A F++++ +++ ++++ +++ LRY ++IMTD D
Sbjct: 526 GVFPLKGKLLNVRDASFKQLMDNKEIQNIFKIMGLDITDKNKQDIKGLRYGSLMIMTDQD 585
Query: 863 IDGAHIRALLLTFFYRKMPKLIEY-GYIYIAQPPLYKIKYGNNE 905
DG+HI+ LL+ ++ P L+++ G++ P+ K++ GN E
Sbjct: 586 YDGSHIKGLLINMIHKFWPSLLKHKGFLCEFVTPIVKVQKGNQE 629
Score = 51 (23.0 bits), Expect = 6.3e-16, Sum P(2) = 6.3e-16
Identities = 21/90 (23%), Positives = 34/90 (37%)
Query: 439 IVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQN 498
++ EL ++ +I+GG +G G N S+ + T+ EF+ QN
Sbjct: 123 MIFGELLTSDNYDDAEDRITGGRNGFGAKLTNIFSK--EFTVQCGDSSRKKEFKMTWFQN 180
Query: 499 RI------IKTINGISVSPIKIIGDTNKQG 522
IK NG + D +K G
Sbjct: 181 MSKFSDPHIKNYNGKDYVKVTFKPDLDKFG 210
Score = 43 (20.2 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 302 NREKASEELEINYNGKDKNFIKFLIK 327
N K S+ NYNGKD ++K K
Sbjct: 180 NMSKFSDPHIKNYNGKD--YVKVTFK 203
>POMBASE|SPBC1A4.03c [details] [associations]
symbol:top2 "DNA topoisomerase II" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=NAS] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IMP] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IGI;IDA;IMP] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006265 "DNA topological change" evidence=IGI;IDA;IMP]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=ISO] [GO:0006325 "chromatin organization" evidence=IGI]
[GO:0006406 "mRNA export from nucleus" evidence=IMP] [GO:0007076
"mitotic chromosome condensation" evidence=IMP] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IGI] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 PomBase:SPBC1A4.03c Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0006406
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0007076 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006325 GO:GO:0000228
GO:GO:0006271 GO:GO:0000712 GO:GO:0042790 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 OMA:AKEYFQD EMBL:X04326 PIR:T39851
RefSeq:NP_595805.1 ProteinModelPortal:P08096 SMR:P08096
STRING:P08096 EnsemblFungi:SPBC1A4.03c.1 GeneID:2540541
KEGG:spo:SPBC1A4.03c OrthoDB:EOG4XPTPZ NextBio:20801667
Uniprot:P08096
Length = 1485
Score = 224 (83.9 bits), Expect = 3.9e-15, Sum P(3) = 3.9e-15
Identities = 74/281 (26%), Positives = 131/281 (46%)
Query: 631 FTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIP 690
F NNI + GGTH+ + + I AI++ +++ KK+ ++ I+ + ++ +I
Sbjct: 359 FVNNISTIRGGTHVNYVANKIVDAIDEVVKKEN--KKAPVKAF--QIKNYVQVFVNCQIE 414
Query: 691 DPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXXXX 750
+P F+SQTK L +++V + TL D + +S ++
Sbjct: 415 NPSFDSQTKETL-TTKVSAFGSQC---TLSDKFLKAIKKSSVV-----EEVLKFATAKAD 465
Query: 751 XXLTRKKN-LIDDIELSTKLADCQE---KNPELCELYIVEGDSAGGSVKQGRD---RRFQ 803
L++ L I TKL D + K C L + EGDSA G R +
Sbjct: 466 QQLSKGDGGLRSRITGLTKLEDANKAGTKESHKCVLILTEGDSAKSLAVSGLSVVGRDYY 525
Query: 804 AVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADI 863
V PLRGK+LN+ +A +I+ +++ ++ +++ LRY ++IMTD D
Sbjct: 526 GVFPLRGKLLNVREASHSQILNNKEIQAIKKIMGFTHKKTYTDVKGLRYGHLMIMTDQDH 585
Query: 864 DGAHIRALLLTFFYRKMPKLIEY-GYIYIAQPPLYKIKYGN 903
DG+HI+ L++ + P L++ G++ P+ K GN
Sbjct: 586 DGSHIKGLIINYLESSYPSLLQIPGFLIQFITPIIKCTRGN 626
Score = 61 (26.5 bits), Expect = 3.9e-15, Sum P(3) = 3.9e-15
Identities = 29/130 (22%), Positives = 55/130 (42%)
Query: 438 EIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLS-RFLQLTINRNKKIHYMEFRYGVL 496
E++ L ++ N K++GG +G G N S F+ T ++ + Y + Y +
Sbjct: 184 ELIFGNLLTSSNYDDNQKKVTGGRNGYGAKLCNIFSTEFVVETADKERMKKYKQTWYDNM 243
Query: 497 QNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNN 556
+ I + P + T K F +D KI ++ I+K+RI +++
Sbjct: 244 SRKSEPVITSLK-KPDEYTKITFKPDLA-KFGMD-KIDDDM---VSIIKRRIYDMAGTVR 297
Query: 557 GVCITLIDER 566
+ L +ER
Sbjct: 298 ETKVYLNNER 307
Score = 52 (23.4 bits), Expect = 3.9e-15, Sum P(3) = 3.9e-15
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 345 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGY 397
+S ++ Q L E V +RP+ YIG T +VF+ N +D Y
Sbjct: 71 NSNVSTQYQRLTPREHVLRRPDTYIGSIEPTTS-EMWVFDSEKNKLDYKAVTY 122
>TIGR_CMR|CJE_0002 [details] [associations]
symbol:CJE_0002 "DNA polymerase III, beta subunit"
species:195099 "Campylobacter jejuni RM1221" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001001 InterPro:IPR022634
InterPro:IPR022635 InterPro:IPR022637 Pfam:PF00712 Pfam:PF02767
Pfam:PF02768 PIRSF:PIRSF000804 SMART:SM00480 GO:GO:0005737
GO:GO:0003677 GO:GO:0006260 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0008408 GO:GO:0003887 GO:GO:0009360 eggNOG:COG0592 KO:K02338
OMA:DYNRVIP ProtClustDB:PRK05643 TIGRFAMs:TIGR00663
RefSeq:YP_178031.1 ProteinModelPortal:Q5HXF4 STRING:Q5HXF4
GeneID:3230658 KEGG:cjr:CJE0002 PATRIC:20041693
HOGENOM:HOG000100222 BioCyc:CJEJ195099:GJC0-2-MONOMER
Uniprot:Q5HXF4
Length = 355
Score = 218 (81.8 bits), Expect = 7.6e-15, P = 7.6e-15
Identities = 84/332 (25%), Positives = 147/332 (44%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+L +N KN + + + + VEKK+ I S++ + +K+ ++D E+ I Y
Sbjct: 1 MKLSIN--KNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGIN-YKI 57
Query: 61 VGYGNSSINIIVA-ARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYP 119
S A A+ D+++SL E V I+N +FI+ +K+ L + +++P
Sbjct: 58 KKIRVESSGFATANAKSIADVIKSLNNEEVVLETIDN-FLFIRQKSTKYKLPMFNHEDFP 116
Query: 120 IMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHR 179
N++ +F + L L + SI + +Y LNG L + I V +D R
Sbjct: 117 NFP-NTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTDKINFVGTDTKR 175
Query: 180 LTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQXXXXXXXXXXXXX 239
L Y ++K + IP+K + +Q+L K +E+ N
Sbjct: 176 LAIY--TLEKANNQEFSFSIPKKAIMEMQKLFYEK---IEIFYDQNMLIAKNENFEFFTK 230
Query: 240 XXDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS 299
+ KF DY+ VI +++ + + SL++IS+++ +K+K K + +S
Sbjct: 231 LINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVT-EKMK--LHFNKDKIIFEGIS 287
Query: 300 SSNREKASEELEINYNGKDKNFIKFLIKIMLL 331
N E A ELEI G + F IKI L
Sbjct: 288 LDNME-AKTELEIQ-TGVSEEF-NLTIKIKYL 316
>TAIR|locus:2146658 [details] [associations]
symbol:GYRB3 "DNA GYRASE B3" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006259 "DNA metabolic process" evidence=ISS] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IEA;ISS;IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IBA] [GO:0003916 "DNA topoisomerase
activity" evidence=IGI] InterPro:IPR001005 InterPro:IPR001241
InterPro:IPR013506 Pfam:PF00204 SMART:SM00433 SMART:SM00717
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005694
GO:GO:0007059 GO:GO:0003682 GO:GO:0006261 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009330
GO:GO:0006265 GO:GO:0003918 eggNOG:COG0187 KO:K02470 EMBL:AY074291
EMBL:AY091322 EMBL:AY519549 IPI:IPI00536772 RefSeq:NP_196031.2
UniGene:At.33174 ProteinModelPortal:Q8VY11 SMR:Q8VY11
EnsemblPlants:AT5G04110.1 GeneID:830289 KEGG:ath:AT5G04110
TAIR:At5g04110 InParanoid:Q8VY11 Genevestigator:Q8VY11
Uniprot:Q8VY11
Length = 546
Score = 223 (83.6 bits), Expect = 9.1e-15, P = 9.1e-15
Identities = 58/228 (25%), Positives = 113/228 (49%)
Query: 580 SGFVSYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWN-NSYNENILCFTNNILQV 638
S FV+++N K +H + ++++QW + Y+ IL + N I +
Sbjct: 43 SEFVTWLNADKKPLHDVL------GFRKEINGTTINIALQWCVDGYSNKILGYANGIRTM 96
Query: 639 DGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQT 698
DGGT++ G+++ ITR +N +E+++ ++ I E + EGLTC++S+ +P P+F QT
Sbjct: 97 DGGTYIDGVKASITRTLNSLVEKSKLVEDKDIIFTEEHVMEGLTCIVSVIVPKPEFEGQT 156
Query: 699 KNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXXXXXXLTRKKN 758
+ +L + VR+ V++ + + L + + +P + I + ++
Sbjct: 157 Q-RLGNPNVREIVDQSVQECLMESFELHPDVFESIMSKSYNAYKTDLAVKRARDVYSSES 215
Query: 759 --LIDDIE-LSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQ 803
++ IE + KL + + E E +I G S+GG+ K DR F+
Sbjct: 216 VAMVCAIESIPMKLTN---SSSETSETFIGRGVSSGGAAKHDSDRCFK 260
>DICTYBASE|DDB_G0270418 [details] [associations]
symbol:top2 "DNA topoisomerase II" species:44689
"Dictyostelium discoideum" [GO:0006265 "DNA topological change"
evidence=IEA;ISS;IBA] [GO:0006259 "DNA metabolic process"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0009295 "nucleoid"
evidence=IBA] [GO:0044774 "mitotic DNA integrity checkpoint"
evidence=IBA] [GO:0007059 "chromosome segregation" evidence=IBA]
[GO:0006312 "mitotic recombination" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 dictyBase:DDB_G0270418 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
ProtClustDB:PTZ00108 OMA:ADNKQND RefSeq:XP_646786.1 HSSP:P11388
ProteinModelPortal:Q55BP5 SMR:Q55BP5 STRING:Q55BP5 PRIDE:Q55BP5
EnsemblProtists:DDB0231510 GeneID:8617759 KEGG:ddi:DDB_G0270418
Uniprot:Q55BP5
Length = 1521
Score = 206 (77.6 bits), Expect = 9.3e-15, Sum P(4) = 9.3e-15
Identities = 80/300 (26%), Positives = 129/300 (43%)
Query: 616 VSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGE 675
V++ + +N+ + F N+I V GGTH+T S I AI + + + K +I
Sbjct: 370 VTLSKESQFNQ--VSFVNSICTVKGGTHVTHALSNIVTAIQEQVNKKN---KGSADIKPA 424
Query: 676 DIREGLTCVLSIKIPDPKFNSQTKNKLVS--SEVRKPVE--EIIIKTLFDFLQENPGESK 731
I+ L+ ++ I +P F+SQTK L S S E E IK + D G
Sbjct: 425 FIKNHLSVFVNCLIENPHFDSQTKETLTSKISSFGSRCEPSEKFIKRVLD---SKSGIVA 481
Query: 732 LICXXXXXXXXXXXXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSA- 790
I + K I ++ LA + E C L + EGDSA
Sbjct: 482 SILEFAQFKDQSALKRSTSSGGKKGKVSIPKLD-DANLAGGTKS--EDCTLILTEGDSAK 538
Query: 791 ----GGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFN 846
G G+D PL+GK+LN+ + + K+I +++ +
Sbjct: 539 SLATAGISVVGKDH--YGAFPLKGKLLNV-RDQSTKVINNDEINNIVTILGLKYGKVYET 595
Query: 847 LEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEY-GYIYIAQPPLYKIKYGNNE 905
L LRY ++IMTD D DG+HI+ L++ + P L+ G++ P+ K+ + NN+
Sbjct: 596 LSDLRYGHLMIMTDQDHDGSHIKGLIINMVHHFWPTLLRMPGFLVEFITPIVKV-FKNNQ 654
Score = 78 (32.5 bits), Expect = 9.3e-15, Sum P(4) = 9.3e-15
Identities = 33/134 (24%), Positives = 62/134 (46%)
Query: 438 EIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLS-RFL-QLTINRNKKIHYMEFRYGV 495
E++ L ++ + +++GG +G G N S +F+ + +++KK++ F
Sbjct: 211 ELIFGNLLTSSHYDDSEKRLTGGRNGFGAKLANIFSTKFIVECADSKSKKLYKQTF---- 266
Query: 496 LQNRIIKTINGISVSPIKIIGDTNKQG-TKIHFWVDEKIFSNIEFHYEI---LKKRIREL 551
T N S KI NK TKI F+ + F +EF ++ L KR+ ++
Sbjct: 267 -------TNNMRSKEDPKITSYQNKTDYTKITFYPELDRFGMVEFDDDLVALLSKRVYDI 319
Query: 552 SFLNNGVCITLIDE 565
+ N + ++L DE
Sbjct: 320 AGCNPTLKVSLNDE 333
Score = 54 (24.1 bits), Expect = 9.3e-15, Sum P(4) = 9.3e-15
Identities = 22/78 (28%), Positives = 34/78 (43%)
Query: 297 TVSSSNREKASEELEINYNGKDKNFIKFLIKIMLLKNKNSY-DIQDTQESSYSASSI-QI 354
T S K SE +++G DK+ N+N + +I + + S I Q
Sbjct: 58 TTKKSTTSKKSESDNDDFSGDDKSSSS--------DNENVFKNIASSAKKGKSIEEIYQK 109
Query: 355 LEGLEAVRKRPEMYIGDT 372
E L+ + RP+ YIG T
Sbjct: 110 KELLDQILLRPDTYIGST 127
Score = 43 (20.2 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 504 INGISVSPIKIIGDTNKQGTKIHFWVDEKI 533
++ I + P IG T +Q ++ W D+++
Sbjct: 113 LDQILLRPDTYIGSTERQEEELWVWEDKRM 142
Score = 42 (19.8 bits), Expect = 9.3e-15, Sum P(4) = 9.3e-15
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 1075 NFYKIINYLRNEAEN---MVIKQRYKGLGEMNPGQ 1106
+FY + +L+ N +K YKGLG PG+
Sbjct: 658 SFYTMPEFLKWRETNDKGWDVKY-YKGLGTSTPGE 691
Score = 42 (19.8 bits), Expect = 9.3e-15, Sum P(4) = 9.3e-15
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 950 NKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLN 997
NK + ++ +K++ I+ L + D I+N ++ ++A KI KK N
Sbjct: 1155 NKEL-VISNVKKVDLINKLKEMKFDRIINKNSNKSARD---KIKKKKN 1198
Score = 40 (19.1 bits), Expect = 1.5e-14, Sum P(4) = 1.5e-14
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 946 IDKYNKTIEIVHRLKQIIDISILSAI-------MSDVILNLDTRENAEQFAKK-IIKKLN 997
I YN +++ ++ ID L I + + N ++ Q+ K I KKL+
Sbjct: 920 IPNYNPR-DLIQNMRLAIDGKPLKPIKPWYRGFLGSIEANQGSKVQGGQYLSKGIWKKLS 978
Query: 998 DSNIEI 1003
D+ EI
Sbjct: 979 DNRFEI 984
>UNIPROTKB|Q7S9W8 [details] [associations]
symbol:NCU06338 "DNA topoisomerase 2" species:367110
"Neurospora crassa OR74A" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR017956
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00384 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 KO:K03164 HOGENOM:HOG000216693 OrthoDB:EOG4XPTPZ
EMBL:AABX02000026 RefSeq:XP_962372.2 UniGene:Ncr.23351
ProteinModelPortal:Q7S9W8 SMR:Q7S9W8 STRING:Q7S9W8
EnsemblFungi:EFNCRT00000006113 GeneID:3878536 KEGG:ncr:NCU06338
OMA:FFTLPQY Uniprot:Q7S9W8
Length = 1909
Score = 216 (81.1 bits), Expect = 8.3e-14, Sum P(3) = 8.3e-14
Identities = 71/279 (25%), Positives = 123/279 (44%)
Query: 631 FTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIE-IIGEDIREGLTCVLSIKI 689
F NNI GG+H+ + I + K +++ KK K + +++ ++ I
Sbjct: 408 FVNNIATTSGGSHVNYIADQIIEVLMKELQK----KKGKGHGLKTANVKNQFFIFINCLI 463
Query: 690 PDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXXX 749
+P F+SQTK +L + KP + L D + +S+ I
Sbjct: 464 DNPAFSSQTKEQLTT----KPAKFGSKCQLGDLFLKKVRQSEAIDNLLSFADKKRDKDLA 519
Query: 750 XXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGR---DRRFQAVL 806
+++K + +D + A + + C L + EGDSA G GR D V
Sbjct: 520 KNDGSKRKRISNDKLIEANYAG--GRYSQECTLILTEGDSARGLAVAGRAILDPNRIGVF 577
Query: 807 PLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADIDGA 866
PLRGK+LN+ A ++I+ +++ + + + LRY ++IM D D+DG+
Sbjct: 578 PLRGKMLNVRDASADQILKNKEVENIKKFLGLKHGKVYTDTKDLRYGHLMIMADQDLDGS 637
Query: 867 HIRALLLTFFYRKMPKLIEY-GYIYIAQPPLYKIKYGNN 904
HI+ LL+ FF + P L+ + P+ K+ G N
Sbjct: 638 HIKGLLINFFECQFPSLLRIPNFFQEFITPVVKVWQGPN 676
Score = 66 (28.3 bits), Expect = 8.3e-14, Sum P(3) = 8.3e-14
Identities = 29/100 (29%), Positives = 36/100 (36%)
Query: 377 GLHHFVFEILDNAIDESLA-GYCTKINVTIYXXXXXXXXXX-GRGXXXXXXXXXXXXXXR 434
GL+ EIL NA D S T + VTI G+G
Sbjct: 178 GLYKIFDEILVNAADNSQRDSSMTFLKVTINRESGEISVENNGKGIPVEIHGTEKCY--- 234
Query: 435 SAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSR 474
E++ L AG F+ N K GG +G G N SR
Sbjct: 235 -VPELIFGHLLAGSNFDDNEKKTVGGRNGYGAKLTNIFSR 273
Score = 46 (21.3 bits), Expect = 8.3e-14, Sum P(3) = 8.3e-14
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 353 QILEGLEAVRKRPEMYIG 370
Q L LE + KRP+ YIG
Sbjct: 132 QKLTQLEHILKRPDTYIG 149
>TAIR|locus:2076201 [details] [associations]
symbol:TOPII "AT3G23890" species:3702 "Arabidopsis
thaliana" [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006259 "DNA metabolic process" evidence=IEA;ISS] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IEA;ISS;IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS;IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS;IBA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0044774 "mitotic DNA integrity checkpoint"
evidence=IBA] [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0000226 "microtubule cytoskeleton organization"
evidence=RCA] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006260 "DNA replication" evidence=RCA]
[GO:0006270 "DNA replication initiation" evidence=RCA] [GO:0006275
"regulation of DNA replication" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0009909 "regulation of flower development" evidence=RCA]
[GO:0009957 "epidermal cell fate specification" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0016458
"gene silencing" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0034968 "histone lysine
methylation" evidence=RCA] [GO:0051225 "spindle assembly"
evidence=RCA] [GO:0051567 "histone H3-K9 methylation" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 EMBL:AP001297
GO:GO:0009330 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 eggNOG:COG0187 Gene3D:3.40.50.670
PROSITE:PS50880 KO:K03164 HOGENOM:HOG000216693 OMA:AKEYFQD
EMBL:L21015 EMBL:U12284 EMBL:U12285 EMBL:M84654 IPI:IPI00527804
PIR:S53598 RefSeq:NP_189031.1 UniGene:At.22343
ProteinModelPortal:P30182 SMR:P30182 STRING:P30182 PaxDb:P30182
PRIDE:P30182 EnsemblPlants:AT3G23890.1 GeneID:821972
KEGG:ath:AT3G23890 GeneFarm:2656 TAIR:At3g23890 InParanoid:P30182
PhylomeDB:P30182 ProtClustDB:PLN03237 Genevestigator:P30182
GermOnline:AT3G23890 Uniprot:P30182
Length = 1473
Score = 223 (83.6 bits), Expect = 1.3e-13, Sum P(4) = 1.3e-13
Identities = 69/258 (26%), Positives = 115/258 (44%)
Query: 631 FTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIP 690
F N+I + GGTH+ + S IT I + + K + +++ L ++ I
Sbjct: 316 FVNSIATIKGGTHVDYVTSQITNHIVAAVNK----KNKNANVKAHNVKNHLWVFVNALID 371
Query: 691 DPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXXXX 750
+P F+SQTK L +R+ + DFL++ G+S ++
Sbjct: 372 NPAFDSQTKETLT---LRQSSFGSKCELSEDFLKK-VGKSGVVENLLSWADFKQNKDLKK 427
Query: 751 XXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRD---RRFQAVLP 807
+ ++ +E A+ KN LC L + EGDSA GR + V P
Sbjct: 428 SDGAKTGRVL--VEKLDDAAEAGGKNSRLCTLILTEGDSAKSLALAGRSVLGNNYCGVFP 485
Query: 808 LRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADIDGAH 867
LRGK+LN+ +A +I +++ N+ LRY +++IMTD D DG+H
Sbjct: 486 LRGKLLNVREASTTQITNNKEIENLKKILGLKQNMKYENVNSLRYGQMMIMTDQDHDGSH 545
Query: 868 IRALLLTFFYRKMPKLIE 885
I+ LL+ F + P L++
Sbjct: 546 IKGLLINFIHSFWPSLLQ 563
Score = 64 (27.6 bits), Expect = 1.3e-13, Sum P(4) = 1.3e-13
Identities = 48/229 (20%), Positives = 89/229 (38%)
Query: 438 EIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLS-RFLQLTINRNKKIHYMEFRYGVL 496
E++ L ++ N K +GG +G G N S F+ T + + Y + V
Sbjct: 139 EMIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQ----VF 194
Query: 497 QNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEI---LKKRIRELS- 552
+N + G P+ + ++ TK+ F D K F+ E ++ + KR+ +++
Sbjct: 195 ENNM-----GKKSEPVITKCNKSENWTKVTFKPDLKKFNMTELEDDVVALMSKRVFDIAG 249
Query: 553 FLNNGVCITLIDERXXXXXXXXXXXXTSGFVSYINKSKLVVHPTIFQAXXXXXXXXXXXX 612
L V + L ++ ++S NKS+ P
Sbjct: 250 CLGKSVKVELNGKQIPVKSFTDYVDL---YLSAANKSR-TEDPL-------PRLTEKVND 298
Query: 613 XXDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITR----AINK 657
+V + + + + F N+I + GGTH+ + S IT A+NK
Sbjct: 299 RWEVCVSLSEGQFQQV-SFVNSIATIKGGTHVDYVTSQITNHIVAAVNK 346
Score = 41 (19.5 bits), Expect = 1.3e-13, Sum P(4) = 1.3e-13
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 331 LKNKNSYDIQDTQESSYSASSIQILEG-------LEAVRKRPEMYIGDTSDGT 376
L+N N+ ++ S +A+ + +E LE + RP+ YIG T
Sbjct: 7 LQNSNAANVAKAPAKSRAAAGGKTIEEMYQKKSQLEHILLRPDTYIGSIEKHT 59
Score = 39 (18.8 bits), Expect = 1.3e-13, Sum P(4) = 1.3e-13
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 1080 INYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDA 1127
+ L + + M+I + + P LW + + + + L K+ +KDA
Sbjct: 1133 VEELLADRDKMIIA--VADMKKTTPKSLWLSDLESLDKELEKLDLKDA 1178
>TIGR_CMR|DET_1227 [details] [associations]
symbol:DET_1227 "DNA polymerase III, beta subunit"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001001 InterPro:IPR022634
InterPro:IPR022635 InterPro:IPR022637 Pfam:PF00712 Pfam:PF02767
Pfam:PF02768 PIRSF:PIRSF000804 SMART:SM00480 GO:GO:0005737
GO:GO:0003677 GO:GO:0006260 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0008408 GO:GO:0003887 GO:GO:0009360 eggNOG:COG0592 KO:K02338
OMA:DYNRVIP TIGRFAMs:TIGR00663 HOGENOM:HOG000071792
RefSeq:YP_181940.1 ProteinModelPortal:Q3Z759 STRING:Q3Z759
GeneID:3229498 KEGG:det:DET1227 PATRIC:21609487
ProtClustDB:CLSK935580 BioCyc:DETH243164:GJNF-1228-MONOMER
Uniprot:Q3Z759
Length = 378
Score = 208 (78.3 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 69/344 (20%), Positives = 152/344 (44%)
Query: 16 LQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAAR 75
L +V + LPI +N+L+ + ++ +T+ E+ I+ + + V A+
Sbjct: 14 LNIVGKAAAGRTTLPITNNVLISTDDGRLKLAATNLEMAISCWIGAKIEEEG-STTVPAK 72
Query: 76 KFIDILRSLPETE-KVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLS 134
+ + SLP + ++ + ++K + IK + + + +DAK++P + + ++
Sbjct: 73 LLTEFVSSLPNDKIELNLNAKSKALNIKCARFEARITGVDAKDFPPVP-KVENGISTKIN 131
Query: 135 QKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSC 194
+ + ++ V F+ A + R L G+ F+ + ++DG RL Y++ + + +
Sbjct: 132 VEAFRQAVSEVVFASATDESRPVLTGVNAEFEGSTLTLAAADGFRLAVYKLPLLEAVKTA 191
Query: 195 SDIIIPRKTVFTLQRLLENKENP---VELKISNNQXXXXXXXXXXXXXXXDGKFLDYKYV 251
+ +IIP +T+ L RL E + + + +Q G F Y +
Sbjct: 192 TKVIIPARTLGELSRLASMDEEEALMINVDTAKSQILFRLKNIELVSQLVQGNFPQYNQI 251
Query: 252 ISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKP--NYL--KITVSSSNREKAS 307
I + +V+ N+ L + + +I + D VRL++ P N K+T+S+ + E
Sbjct: 252 IPQSFTTKVVVDANQFLMATRTATIFARDGGGIVRLMMNPGGNNTPGKLTISARSEEVGD 311
Query: 308 E--ELEINYNGKDKNFI---KFLIKIMLLKNKNSYDIQDTQESS 346
EL+ G++ K+L+ ++ + ++ T SS
Sbjct: 312 NTGELDAVVQGEEAKIAFNGKYLLDVLGVLKAQQVSLEVTSPSS 355
>UNIPROTKB|Q755V8 [details] [associations]
symbol:AER410W "DNA topoisomerase 2" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:AE016818 GenomeReviews:AE016818_GR GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 OMA:AKEYFQD OrthoDB:EOG4XPTPZ
RefSeq:NP_985265.1 ProteinModelPortal:Q755V8 SMR:Q755V8
STRING:Q755V8 EnsemblFungi:AAS53089 GeneID:4621483
KEGG:ago:AGOS_AER410W PhylomeDB:Q755V8 Uniprot:Q755V8
Length = 1427
Score = 232 (86.7 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 112/480 (23%), Positives = 190/480 (39%)
Query: 438 EIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLS-RFLQLTINRN---KKIHYMEFRY 493
E++ L ++ N K++GG +G G N S F+ T + K + E
Sbjct: 121 ELIFGHLLTSSNYDDNEKKVTGGRNGYGAKLCNIFSTEFILETSDPKSGQKYVQKWESNM 180
Query: 494 GVLQN-RIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELS 552
V +I G S + I D + G ++ +D+ I + + +R+++
Sbjct: 181 NVCHPPKITSYKKGPSYTKITFKPDLQRFGMEV---LDDDILGVMRRRVYDINGSVRDVN 237
Query: 553 FLNNGVCITLIDERXXXXXXXXXXXXT----SGFVSYINKSKLVVHPTIFQAXXXXXXXX 608
NG + + + + SG + S+ V PTI
Sbjct: 238 VSLNGKSLKIRNFKSYMELYMRSLEKKRLIDSGMAPE-SASEKVNAPTILYEKVNDRWEL 296
Query: 609 XXXXXXDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKS 668
D+S Q + F N+I GGTH+ L I + ++ E L K
Sbjct: 297 GFAVS-DISFQQ--------ISFVNSIATTSGGTHVNYLTDQIVKKVS------ELLSKK 341
Query: 669 KIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPG 728
K + IR + ++ I +P F SQTK +L ++ VR + + + DF+ +
Sbjct: 342 KKTVKPFQIRNNIFIFINCLIENPAFTSQTKEQL-TTRVRDFGSKCEVSS--DFINKIM- 397
Query: 729 ESKLICXXXXXXXXXXXXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGD 788
+++L TRK + D +L K C L + EGD
Sbjct: 398 KTELATKIFEIADENAAKLLKQTDGTRKNRITDYPKLEDA-NKAGTKEGHKCTLVLTEGD 456
Query: 789 SA-----GGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQD 843
SA G GRD + PL+GK+LN+ A E+I + + ++
Sbjct: 457 SALSLAVAGLSVVGRD--YYGCFPLKGKILNVRDASVEQIRKNTEIQAIKKIMGLQHKK- 513
Query: 844 EFNLEK---LRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEY-GYIYIAQPPLYKI 899
++ +E LRY ++IMTD D DG+HI+ LL+ FF P L++ G++ P+ K+
Sbjct: 514 QYTIEDMKTLRYGHVMIMTDQDHDGSHIKGLLINFFESTFPGLLDIPGFLIEFITPIMKV 573
Score = 50 (22.7 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 342 TQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEI-LDNAIDESL 394
T+E + S + +I + LE + KRP+ YIG + H +V + +D +++ +
Sbjct: 6 TKEKNASETYQKITQ-LEHILKRPDTYIGSV-EMQDFHMWVHDAEMDCMVEKQV 57
Score = 42 (19.8 bits), Expect = 1.4e-12, Sum P(3) = 1.4e-12
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 355 LEGLEAVRKRPEMYIGDTSDGTGL 378
++ +E V R E YI +DG G+
Sbjct: 84 MKKIEVVINREENYIEVKNDGNGI 107
Score = 37 (18.1 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 928 LISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQ 987
L+ ++ + KE Y L +K NK E L++++ S +D L++ RE E+
Sbjct: 1124 LLGMKIWSLTKEKYERLLREKQNKEAE----LQELLGKSAKDLWNAD--LDMFVREY-EE 1176
Query: 988 FAK 990
F K
Sbjct: 1177 FIK 1179
>ASPGD|ASPL0000029372 [details] [associations]
symbol:top2 species:162425 "Emericella nidulans"
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IEA] [GO:0006325 "chromatin organization"
evidence=IEA] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IEA]
[GO:0007076 "mitotic chromosome condensation" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR017956
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418 SMART:SM00384
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261 EMBL:BN001305
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:AACD01000094 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 OMA:ADNKQND OrthoDB:EOG4XPTPZ
RefSeq:XP_663010.1 ProteinModelPortal:Q5B224 SMR:Q5B224
STRING:Q5B224 EnsemblFungi:CADANIAT00003686 GeneID:2871696
KEGG:ani:AN5406.2 Uniprot:Q5B224
Length = 1709
Score = 221 (82.9 bits), Expect = 4.3e-13, Sum P(4) = 4.3e-13
Identities = 77/285 (27%), Positives = 126/285 (44%)
Query: 631 FTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGE-DIREGLTCVLSIKI 689
F N+I GGTH+ + I +++ +++N KK I+ IR ++ KI
Sbjct: 403 FVNSIATTSGGTHVNYIADQIAGKLSESLKKN---KKGTGSILKPAQIRNYCFLFVNAKI 459
Query: 690 PDPKFNSQTKNKLVSSEVR---KPV-EEIIIKTLFDFLQENPGESKLICXXXXXXXXXXX 745
+P F+SQTK +L + + + KP+ +E +K + N G +
Sbjct: 460 VNPAFSSQTKEQLTTKQTQFGSKPILDESFLKKV-----ANSGVLDSLKRFADHKADLML 514
Query: 746 XXXXXXXLTRKKNLIDDIELSTKLADCQE---KNPELCELYIVEGDSAGGSVKQGR---D 799
+R N KL D K+ C L + EG+SA G GR
Sbjct: 515 KKSDGGRRSRMNN--------PKLTDANRAGTKDGYKCTLILTEGESAKGLAMAGRAVVG 566
Query: 800 RRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMT 859
V PLRGK+LN+ A F++I +E+ +++ + + LRY ++IMT
Sbjct: 567 ADLFGVYPLRGKMLNVRDASFDQISKNEEIQSIKNFMGLQHKKEYTDTKGLRYGHLMIMT 626
Query: 860 DADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQ-PPLYKIKYGN 903
D D DG+HI+ LL+ F + P L++ I P+ K+ G+
Sbjct: 627 DQDHDGSHIKGLLINFLEAQFPSLLKIPEFLIEFITPIVKVWKGD 671
Score = 56 (24.8 bits), Expect = 4.3e-13, Sum P(4) = 4.3e-13
Identities = 31/128 (24%), Positives = 54/128 (42%)
Query: 438 EIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQ 497
+++ L ++ KI+GG +G G N S + +K+ + RY LQ
Sbjct: 226 QLIFGNLLTSSNYDDAKEKITGGRNGFGAKLCNVFSTEFTVETQDSKQ----KKRY--LQ 279
Query: 498 NRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFS--NIEFHYE-ILKKRIRELSFL 554
T N +V KI T++ F D F I+ +E ++K+R+ +L+
Sbjct: 280 TW---TDNMQTVGKPKITAAKGSDFTRVTFKADFPRFGMDGIDDDFEALIKRRVYDLAG- 335
Query: 555 NNGVCITL 562
GV + L
Sbjct: 336 TTGVTVKL 343
Score = 46 (21.3 bits), Expect = 4.3e-13, Sum P(4) = 4.3e-13
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 338 DIQDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGT 376
D D E ++S Q L E + RP+ YIG T
Sbjct: 106 DDVDASEEVKASSKYQKLNLREHITIRPDSYIGSVERTT 144
Score = 42 (19.8 bits), Expect = 4.3e-13, Sum P(4) = 4.3e-13
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 1107 LWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDN 1141
L +TT++P + + K A +A K TLM D+
Sbjct: 1611 LKQTTLSPAAKAYASKQAKGASTASKK-KTLMDDS 1644
>UNIPROTKB|Q5B224 [details] [associations]
symbol:AN5406.2 "DNA topoisomerase 2" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR017956
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418 SMART:SM00384
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261 EMBL:BN001305
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:AACD01000094 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 OMA:ADNKQND OrthoDB:EOG4XPTPZ
RefSeq:XP_663010.1 ProteinModelPortal:Q5B224 SMR:Q5B224
STRING:Q5B224 EnsemblFungi:CADANIAT00003686 GeneID:2871696
KEGG:ani:AN5406.2 Uniprot:Q5B224
Length = 1709
Score = 221 (82.9 bits), Expect = 4.3e-13, Sum P(4) = 4.3e-13
Identities = 77/285 (27%), Positives = 126/285 (44%)
Query: 631 FTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGE-DIREGLTCVLSIKI 689
F N+I GGTH+ + I +++ +++N KK I+ IR ++ KI
Sbjct: 403 FVNSIATTSGGTHVNYIADQIAGKLSESLKKN---KKGTGSILKPAQIRNYCFLFVNAKI 459
Query: 690 PDPKFNSQTKNKLVSSEVR---KPV-EEIIIKTLFDFLQENPGESKLICXXXXXXXXXXX 745
+P F+SQTK +L + + + KP+ +E +K + N G +
Sbjct: 460 VNPAFSSQTKEQLTTKQTQFGSKPILDESFLKKV-----ANSGVLDSLKRFADHKADLML 514
Query: 746 XXXXXXXLTRKKNLIDDIELSTKLADCQE---KNPELCELYIVEGDSAGGSVKQGR---D 799
+R N KL D K+ C L + EG+SA G GR
Sbjct: 515 KKSDGGRRSRMNN--------PKLTDANRAGTKDGYKCTLILTEGESAKGLAMAGRAVVG 566
Query: 800 RRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMT 859
V PLRGK+LN+ A F++I +E+ +++ + + LRY ++IMT
Sbjct: 567 ADLFGVYPLRGKMLNVRDASFDQISKNEEIQSIKNFMGLQHKKEYTDTKGLRYGHLMIMT 626
Query: 860 DADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQ-PPLYKIKYGN 903
D D DG+HI+ LL+ F + P L++ I P+ K+ G+
Sbjct: 627 DQDHDGSHIKGLLINFLEAQFPSLLKIPEFLIEFITPIVKVWKGD 671
Score = 56 (24.8 bits), Expect = 4.3e-13, Sum P(4) = 4.3e-13
Identities = 31/128 (24%), Positives = 54/128 (42%)
Query: 438 EIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQ 497
+++ L ++ KI+GG +G G N S + +K+ + RY LQ
Sbjct: 226 QLIFGNLLTSSNYDDAKEKITGGRNGFGAKLCNVFSTEFTVETQDSKQ----KKRY--LQ 279
Query: 498 NRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFS--NIEFHYE-ILKKRIRELSFL 554
T N +V KI T++ F D F I+ +E ++K+R+ +L+
Sbjct: 280 TW---TDNMQTVGKPKITAAKGSDFTRVTFKADFPRFGMDGIDDDFEALIKRRVYDLAG- 335
Query: 555 NNGVCITL 562
GV + L
Sbjct: 336 TTGVTVKL 343
Score = 46 (21.3 bits), Expect = 4.3e-13, Sum P(4) = 4.3e-13
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 338 DIQDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGT 376
D D E ++S Q L E + RP+ YIG T
Sbjct: 106 DDVDASEEVKASSKYQKLNLREHITIRPDSYIGSVERTT 144
Score = 42 (19.8 bits), Expect = 4.3e-13, Sum P(4) = 4.3e-13
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 1107 LWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDN 1141
L +TT++P + + K A +A K TLM D+
Sbjct: 1611 LKQTTLSPAAKAYASKQAKGASTASKK-KTLMDDS 1644
>RGD|62048 [details] [associations]
symbol:Top2a "topoisomerase (DNA) II alpha" species:10116 "Rattus
norvegicus" [GO:0000287 "magnesium ion binding" evidence=ISO;ISS]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0003677 "DNA binding"
evidence=ISO;TAS] [GO:0003682 "chromatin binding" evidence=ISO;IDA]
[GO:0003916 "DNA topoisomerase activity" evidence=IDA] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISO;IDA] [GO:0005080 "protein kinase C binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IDA;TAS]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006261 "DNA-dependent DNA
replication" evidence=IBA] [GO:0006265 "DNA topological change"
evidence=ISO;IDA] [GO:0006266 "DNA ligation" evidence=ISO]
[GO:0006312 "mitotic recombination" evidence=IBA] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0007059
"chromosome segregation" evidence=ISO;IBA] [GO:0007420 "brain
development" evidence=IEP] [GO:0007568 "aging" evidence=IEP]
[GO:0008022 "protein C-terminus binding" evidence=ISO] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISO] [GO:0008144 "drug
binding" evidence=ISO] [GO:0008301 "DNA binding, bending"
evidence=ISO;ISS] [GO:0009295 "nucleoid" evidence=IBA] [GO:0009330
"DNA topoisomerase complex (ATP-hydrolyzing)" evidence=ISO;IDA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0021702 "cerebellar
Purkinje cell differentiation" evidence=IEP] [GO:0021707 "cerebellar
granule cell differentiation" evidence=IEP] [GO:0030261 "chromosome
condensation" evidence=ISO] [GO:0030263 "apoptotic chromosome
condensation" evidence=ISO] [GO:0040016 "embryonic cleavage"
evidence=ISO] [GO:0042493 "response to drug" evidence=IEP]
[GO:0042803 "protein homodimerization activity" evidence=ISO]
[GO:0042826 "histone deacetylase binding" evidence=ISO] [GO:0043065
"positive regulation of apoptotic process" evidence=ISO] [GO:0043130
"ubiquitin binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0043566 "structure-specific DNA binding"
evidence=IDA] [GO:0045070 "positive regulation of viral genome
replication" evidence=ISO] [GO:0045870 "positive regulation of
retroviral genome replication" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046982 "protein heterodimerization activity"
evidence=ISO] [GO:0071107 "response to parathyroid hormone stimulus"
evidence=IEP] [GO:0000228 "nuclear chromosome" evidence=ISO]
[GO:0005814 "centriole" evidence=ISO] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 RGD:62048 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005654 GO:GO:0005730 GO:GO:0005814 GO:GO:0042493
GO:GO:0000287 GO:GO:0008144 GO:GO:0007568 GO:GO:0043565
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0006261 GO:GO:0008301 GO:GO:0043065 GO:GO:0030263
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0009330 GO:GO:0070683 GO:GO:0000712 GO:GO:0071107
GO:GO:0000795 GO:GO:0006265 GO:GO:0043566 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164 CTD:7153
HOGENOM:HOG000216693 HOVERGEN:HBG052998 OrthoDB:EOG4KWJS0
GO:GO:0045870 EMBL:Z46372 EMBL:Z19552 EMBL:Z29676 IPI:IPI00193944
PIR:A48536 PIR:JN0598 RefSeq:NP_071519.2 UniGene:Rn.90996
ProteinModelPortal:P41516 SMR:P41516 STRING:P41516 PRIDE:P41516
GeneID:360243 KEGG:rno:360243 BindingDB:P41516 ChEMBL:CHEMBL3400
NextBio:672745 ArrayExpress:P41516 Genevestigator:P41516
Uniprot:P41516
Length = 1526
Score = 198 (74.8 bits), Expect = 1.3e-12, Sum P(4) = 1.3e-12
Identities = 54/169 (31%), Positives = 82/169 (48%)
Query: 756 KKNLIDDIELSTKLADCQEKNPELCELYIVEGDSA-----GGSVKQGRDRRFQAVLPLRG 810
K N I I D +N C L + EGDSA G GRD+ V PLRG
Sbjct: 429 KHNRIKGIPKLDDANDAGSRNSAECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRG 486
Query: 811 KVLNIEKARFEKIILSEQXXXXXXXXXXXXE---QDEFNLEKLRYHRIIIMTDADIDGAH 867
K+LN+ +A ++I+ + + + +DE +L+ LRY +I+IMTD D DG+H
Sbjct: 487 KILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSH 546
Query: 868 IRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNEC--YLRDDIEE 914
I+ LL+ F + P L+ + ++ P+ K+ E Y + EE
Sbjct: 547 IKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEIAFYSLPEFEE 595
Score = 62 (26.9 bits), Expect = 1.3e-12, Sum P(4) = 1.3e-12
Identities = 16/74 (21%), Positives = 35/74 (47%)
Query: 629 LCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIK 688
+ F N+I GG H+ + I ++K ++ + K + + + ++ + +
Sbjct: 309 ISFVNSIATSKGGRHVDYVADQI---VSKLVDVVKKKNKGGVAVKADQVKNHMWIFGNAV 365
Query: 689 IPDPKFNSQTKNKL 702
I +P F+SQTK +
Sbjct: 366 IENPTFDSQTKENM 379
Score = 50 (22.7 bits), Expect = 1.3e-12, Sum P(4) = 1.3e-12
Identities = 31/122 (25%), Positives = 54/122 (44%)
Query: 890 YIAQPPL-YKIKYGNNE-CYLRDDIEEERYMLKIA-----FKNVKLISIENGDII--KEN 940
Y+ PL Y K +E C RD+ E+E LK +K +E +++ KE
Sbjct: 1124 YLLDMPLWYLTKEKKDELCKQRDEKEQELNTLKKKTPSDLWKEDLAAFVEELEVVEAKEK 1183
Query: 941 YFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSN 1000
+ + K ++ + QI ++ + S + VI + T E + KKI +K+ N
Sbjct: 1184 QD-EQVGLPGKGVKAKGKKAQISEV-LPSPVGKRVIPQV-TMEMRAEAEKKIRRKIKSEN 1240
Query: 1001 IE 1002
+E
Sbjct: 1241 VE 1242
Score = 49 (22.3 bits), Expect = 1.3e-12, Sum P(4) = 1.3e-12
Identities = 25/111 (22%), Positives = 40/111 (36%)
Query: 377 GLHHFVFEILDNAIDESLAG-YCTKINVTIYXXXXXXXXXXGRGXXXXXXXXXXXXXXRS 435
GL+ EIL NA D + I VT+ G+G
Sbjct: 79 GLYKIFDEILVNAADNKQRDPKMSCIRVTMMRNNLISIWNNGKGIPVVEHKVEKMY---- 134
Query: 436 AAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLS-RFLQLTINRNKK 485
++ +L ++ + K++GG +G G N S +F T +R K
Sbjct: 135 VPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYK 185
Score = 43 (20.2 bits), Expect = 6.4e-12, Sum P(4) = 6.4e-12
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 1082 YLRNEAENMVIKQRYKGLGEMN------PGQLWETTMNPMIRCLLKVKIKD 1126
YL E ++ + KQR + E+N P LW+ + + L V+ K+
Sbjct: 1132 YLTKEKKDELCKQRDEKEQELNTLKKKTPSDLWKEDLAAFVEELEVVEAKE 1182
Score = 38 (18.4 bits), Expect = 1.6e-11, Sum P(4) = 1.6e-11
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 328 IMLLKNKNSYDIQ-DTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTG 377
I+ L + +YDI T++ + ++ ++ R +MY+ D D TG
Sbjct: 233 IVALMVRRAYDIAGSTKDVKVFLNGNRL--PVKGFRSYVDMYLKDKVDETG 281
>WB|WBGene00010785 [details] [associations]
symbol:top-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0009792 GO:GO:0006261 GO:GO:0000910 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 GeneTree:ENSGT00390000016222 EMBL:Z49069
EMBL:Z70213 PIR:T23620 RefSeq:NP_496536.1 ProteinModelPortal:Q23670
SMR:Q23670 DIP:DIP-27416N IntAct:Q23670 MINT:MINT-227249
STRING:Q23670 PaxDb:Q23670 EnsemblMetazoa:K12D12.1 GeneID:174825
KEGG:cel:CELE_K12D12.1 CTD:174825 WormBase:K12D12.1
InParanoid:Q23670 OMA:ADNKQND NextBio:885666 Uniprot:Q23670
Length = 1520
Score = 204 (76.9 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 68/284 (23%), Positives = 121/284 (42%)
Query: 631 FTNNILQVDGGTHLTGLRSGITRAINKYIEE-NEFLKKSKIEIIGEDIREGLTCVLSIKI 689
F N+I GG H+ + + + K+I+ L K+ + I I+ + ++ I
Sbjct: 347 FVNSIATTKGGRHVDYVAD---QMVAKFIDSIKRKLTKTSMNIKPFQIKNHMWVFVNCLI 403
Query: 690 PDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXXX 749
+P F+SQTK + + ++ ++ F + G + +
Sbjct: 404 ENPTFDSQTKETMTLQQ-KQFGSTCVLSEKFSKAASSVGITDAVMSWVRFKQMDDLNKKC 462
Query: 750 XXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSA-----GGSVKQGRDRRFQA 804
T K I +E + D KN + C L + EGDSA G GRD+
Sbjct: 463 SKTKTSKLKGIPKLEDAN---DAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDK--YG 517
Query: 805 VLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXE---QDEFNLEKLRYHRIIIMTDA 861
V PLRGK+LN+ + ++I + + + + E + + LRY ++++M D
Sbjct: 518 VFPLRGKLLNVREGNMKQIADNAEVNAMIKILGLQYKKKYETEDDFKTLRYGKLMVMADQ 577
Query: 862 DIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNE 905
D DG+HI+ L++ F + P LI+ ++ P+ K G E
Sbjct: 578 DQDGSHIKGLVINFIHHFWPSLIQRNFVEEFITPIVKATKGKEE 621
Score = 68 (29.0 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 30/132 (22%), Positives = 57/132 (43%)
Query: 438 EIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQ 497
E++ L +N + K++GG +G G N S + T+ + + + F+ ++
Sbjct: 174 ELIFGTLLTSSNYNDDEKKVTGGRNGYGAKLCNIFST--KFTLETSSRDYKSAFKQTWIK 231
Query: 498 NRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEI---LKKRIRELSFL 554
N P KI+ T++ TKI F D F E +I + +R +++
Sbjct: 232 NMTRDE------EP-KIVKSTDEDFTKITFSPDLAKFKMKELDDDICHLMARRAYDVAGS 284
Query: 555 NNGVCITLIDER 566
+ GV + L +R
Sbjct: 285 SKGVAVFLNGKR 296
Score = 40 (19.1 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 358 LEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGY 397
LE + RP+ YIG +V+ + ++ +++ Y
Sbjct: 73 LEHILLRPDTYIGSVEHTEKTPMWVYNMEESKLEQRDISY 112
Score = 38 (18.4 bits), Expect = 2.8e-12, Sum P(3) = 2.8e-12
Identities = 14/64 (21%), Positives = 31/64 (48%)
Query: 134 SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGH--RLTYYQVNIDKKF 191
++KT + NM + Q+DI Y + GL + + + A + ++ ++ I+K+
Sbjct: 90 TEKTPMWVYNMEESKLEQRDISY-VPGLYKIYDEILVNAADNKQRDPKMNTIKITINKEK 148
Query: 192 SSCS 195
+ S
Sbjct: 149 NEIS 152
>UNIPROTKB|Q23670 [details] [associations]
symbol:K12D12.1 "Probable DNA topoisomerase 2" species:6239
"Caenorhabditis elegans" [GO:0009295 "nucleoid" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0009792 GO:GO:0006261 GO:GO:0000910
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 GeneTree:ENSGT00390000016222 EMBL:Z49069
EMBL:Z70213 PIR:T23620 RefSeq:NP_496536.1 ProteinModelPortal:Q23670
SMR:Q23670 DIP:DIP-27416N IntAct:Q23670 MINT:MINT-227249
STRING:Q23670 PaxDb:Q23670 EnsemblMetazoa:K12D12.1 GeneID:174825
KEGG:cel:CELE_K12D12.1 CTD:174825 WormBase:K12D12.1
InParanoid:Q23670 OMA:ADNKQND NextBio:885666 Uniprot:Q23670
Length = 1520
Score = 204 (76.9 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 68/284 (23%), Positives = 121/284 (42%)
Query: 631 FTNNILQVDGGTHLTGLRSGITRAINKYIEE-NEFLKKSKIEIIGEDIREGLTCVLSIKI 689
F N+I GG H+ + + + K+I+ L K+ + I I+ + ++ I
Sbjct: 347 FVNSIATTKGGRHVDYVAD---QMVAKFIDSIKRKLTKTSMNIKPFQIKNHMWVFVNCLI 403
Query: 690 PDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXXX 749
+P F+SQTK + + ++ ++ F + G + +
Sbjct: 404 ENPTFDSQTKETMTLQQ-KQFGSTCVLSEKFSKAASSVGITDAVMSWVRFKQMDDLNKKC 462
Query: 750 XXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSA-----GGSVKQGRDRRFQA 804
T K I +E + D KN + C L + EGDSA G GRD+
Sbjct: 463 SKTKTSKLKGIPKLEDAN---DAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDK--YG 517
Query: 805 VLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXE---QDEFNLEKLRYHRIIIMTDA 861
V PLRGK+LN+ + ++I + + + + E + + LRY ++++M D
Sbjct: 518 VFPLRGKLLNVREGNMKQIADNAEVNAMIKILGLQYKKKYETEDDFKTLRYGKLMVMADQ 577
Query: 862 DIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNE 905
D DG+HI+ L++ F + P LI+ ++ P+ K G E
Sbjct: 578 DQDGSHIKGLVINFIHHFWPSLIQRNFVEEFITPIVKATKGKEE 621
Score = 68 (29.0 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 30/132 (22%), Positives = 57/132 (43%)
Query: 438 EIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQ 497
E++ L +N + K++GG +G G N S + T+ + + + F+ ++
Sbjct: 174 ELIFGTLLTSSNYNDDEKKVTGGRNGYGAKLCNIFST--KFTLETSSRDYKSAFKQTWIK 231
Query: 498 NRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEI---LKKRIRELSFL 554
N P KI+ T++ TKI F D F E +I + +R +++
Sbjct: 232 NMTRDE------EP-KIVKSTDEDFTKITFSPDLAKFKMKELDDDICHLMARRAYDVAGS 284
Query: 555 NNGVCITLIDER 566
+ GV + L +R
Sbjct: 285 SKGVAVFLNGKR 296
Score = 40 (19.1 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 358 LEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGY 397
LE + RP+ YIG +V+ + ++ +++ Y
Sbjct: 73 LEHILLRPDTYIGSVEHTEKTPMWVYNMEESKLEQRDISY 112
Score = 38 (18.4 bits), Expect = 2.8e-12, Sum P(3) = 2.8e-12
Identities = 14/64 (21%), Positives = 31/64 (48%)
Query: 134 SQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGH--RLTYYQVNIDKKF 191
++KT + NM + Q+DI Y + GL + + + A + ++ ++ I+K+
Sbjct: 90 TEKTPMWVYNMEESKLEQRDISY-VPGLYKIYDEILVNAADNKQRDPKMNTIKITINKEK 148
Query: 192 SSCS 195
+ S
Sbjct: 149 NEIS 152
>ZFIN|ZDB-GENE-041008-136 [details] [associations]
symbol:top2b "topoisomerase (DNA) II beta"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006259 "DNA metabolic
process" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS;IBA] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS] [GO:0030261
"chromosome condensation" evidence=ISS] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISS] [GO:0007059 "chromosome segregation"
evidence=ISS;IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0071778 "WINAC complex"
evidence=IBA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0005080 "protein kinase C binding" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] [GO:0003682 "chromatin binding"
evidence=IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0042826
"histone deacetylase binding" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0010842 "retina layer
formation" evidence=IMP] [GO:0031290 "retinal ganglion cell axon
guidance" evidence=IMP] [GO:0007412 "axon target recognition"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 ZFIN:ZDB-GENE-041008-136
GO:GO:0005524 GO:GO:0005080 GO:GO:0003682 GO:GO:0006261
GO:GO:0010842 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0042826
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0071778 GO:GO:0007412
GO:GO:0031290 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 HOVERGEN:HBG052998
GeneTree:ENSGT00390000016222 CTD:7155 EMBL:BX927238 EMBL:CR391921
IPI:IPI00495305 RefSeq:NP_001038656.1 UniGene:Dr.105756 SMR:Q1LUT2
STRING:Q1LUT2 Ensembl:ENSDART00000130695 GeneID:569877
KEGG:dre:569877 InParanoid:Q1LUT2 OMA:PITKAAP NextBio:20889886
Uniprot:Q1LUT2
Length = 1618
Score = 222 (83.2 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 77/296 (26%), Positives = 128/296 (43%)
Query: 629 LCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIK 688
+ F N+I GG H+ + + + + K IE + K+ + + ++ L ++
Sbjct: 331 ISFVNSIATTKGGRHIDYI---VDQIVGKLIEVVKKKNKAGVSVKPFQVKNHLWVFVNAL 387
Query: 689 IPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXX 748
I +P F+SQTK + + + + + + F N G + I
Sbjct: 388 IENPTFDSQTKENM-TLQTKSFGSKCALSEKFIRAATNCGIVESILNWVKFKAQTQLNKK 446
Query: 749 XXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSA-----GGSVKQGRDRRFQ 803
K + I I D K+ C L + EGDSA G GRDR
Sbjct: 447 CSSV---KHSKIKGIPKLDDANDAGGKHSSECTLILTEGDSAKSLAVSGLGVIGRDR--Y 501
Query: 804 AVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQ---DEFNLEKLRYHRIIIMTD 860
V PLRGK+LN+ +A ++I+ + + ++ D +L+ LRY RI+IMTD
Sbjct: 502 GVFPLRGKILNVREATHKQIMENAEINNIIKILGLQYKKSYDDPESLKSLRYGRIMIMTD 561
Query: 861 ADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNEC--YLRDDIEE 914
D DG+HI+ LL+ FF+ P L+++ ++ P+ K E Y + EE
Sbjct: 562 QDQDGSHIKGLLINFFHHNWPSLLKHTFLEEFITPIVKASKNKQEVSFYSIPEFEE 617
Score = 52 (23.4 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 30/134 (22%), Positives = 47/134 (35%)
Query: 367 MYIGDTSDGTGLHHFVFEILDNAIDESLAGY-CTKINVTIYXXXXXXXX-XXGRGXXXXX 424
M + + S GL+ EIL NA D T I +TI G+G
Sbjct: 90 MNLREISFVPGLYKIFDEILVNAADNKQRDKNMTTIKITIDPESNTISVWNNGKGIPVVE 149
Query: 425 XXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNK 484
++ L ++ N K++GG +G G N S L+ T+
Sbjct: 150 HKDEKMY----VPALIFGHLLTSSNYDDNEKKVTGGRNGYGAKLCNIFS--LKFTVETAC 203
Query: 485 KIHYMEFRYGVLQN 498
K + F+ +N
Sbjct: 204 KEYKRSFKQTWTEN 217
Score = 50 (22.7 bits), Expect = 3.0e-12, Sum P(3) = 3.0e-12
Identities = 24/114 (21%), Positives = 58/114 (50%)
Query: 452 KNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSP 511
+ +Y ++G G+ + +NG +L +N + Y++F Y +++++ +T G++
Sbjct: 261 RRAYDVAGSCRGVKV-ILNGK----KLPVNSFRS--YVDF-Y--VKDKLDET--GVA--- 305
Query: 512 IKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILK-KRIRELSFLNNGVCITLID 564
+K++ +T + ++ + EK F I F I K R + ++ + + LI+
Sbjct: 306 LKVVNETVNERWEVCLTMSEKGFQQISFVNSIATTKGGRHIDYIVDQIVGKLIE 359
Score = 38 (18.4 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 343 QESSYSASSIQILEG---LEAVRKRPEMYIGDTSDGT 376
+ESS S +I + LE + RP+ YIG T
Sbjct: 42 KESSKKMSVERIYQKKTQLEHILLRPDTYIGSVEPVT 78
>UNIPROTKB|P41515 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:10029
"Cricetulus griseus" [GO:0000287 "magnesium ion binding"
evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0008301 "DNA binding,
bending" evidence=ISS] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0000287 GO:GO:0008301 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 PROSITE:PS50880 CTD:7153
HOVERGEN:HBG052998 EMBL:L04607 PIR:A44406 RefSeq:NP_001233667.1
ProteinModelPortal:P41515 SMR:P41515 GeneID:100689304
Uniprot:P41515
Length = 1526
Score = 198 (74.8 bits), Expect = 2.0e-12, Sum P(4) = 2.0e-12
Identities = 54/169 (31%), Positives = 82/169 (48%)
Query: 756 KKNLIDDIELSTKLADCQEKNPELCELYIVEGDSA-----GGSVKQGRDRRFQAVLPLRG 810
K N I I D +N C L + EGDSA G GRD+ V PLRG
Sbjct: 430 KHNRIKGIPKLDDANDAGSRNSTECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRG 487
Query: 811 KVLNIEKARFEKIILSEQXXXXXXXXXXXXE---QDEFNLEKLRYHRIIIMTDADIDGAH 867
K+LN+ +A ++I+ + + + +DE +L+ LRY +I+IMTD D DG+H
Sbjct: 488 KILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSH 547
Query: 868 IRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNEC--YLRDDIEE 914
I+ LL+ F + P L+ + ++ P+ K+ E Y + EE
Sbjct: 548 IKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQELAFYSLPEFEE 596
Score = 65 (27.9 bits), Expect = 2.0e-12, Sum P(4) = 2.0e-12
Identities = 16/74 (21%), Positives = 35/74 (47%)
Query: 629 LCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIK 688
+ F N+I GG H+ + I ++K ++ + K + + ++ + ++
Sbjct: 310 ISFVNSIATSKGGRHVDYVADQI---VSKLVDVVKKKNKGGVAVKAHQVKNHMWIFVNAL 366
Query: 689 IPDPKFNSQTKNKL 702
I +P F+SQTK +
Sbjct: 367 IENPTFDSQTKENM 380
Score = 50 (22.7 bits), Expect = 2.0e-12, Sum P(4) = 2.0e-12
Identities = 20/86 (23%), Positives = 37/86 (43%)
Query: 439 IVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLS-RFLQLTINRN-KKIHYMEF--RYG 494
++ +L ++ + K++GG +G G N S RF T ++ KK+ + G
Sbjct: 139 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTRFTVETASKEYKKMFKQTWMDNMG 198
Query: 495 VLQNRIIKTINGISVSPIKIIGDTNK 520
+ +K NG + I D +K
Sbjct: 199 RAGDMELKPFNGEDYTCITFQPDLSK 224
Score = 44 (20.5 bits), Expect = 2.0e-12, Sum P(4) = 2.0e-12
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 1082 YLRNEAENMVIKQRYKGLGEMN------PGQLWETTMNPMIRCLLKVKIKD 1126
YL E ++ + KQR + E+N P LW+ + I L V+ K+
Sbjct: 1130 YLTKEKKDELCKQRNEKEQELNTLKNKSPSDLWKEDLAVFIEELEVVEAKE 1180
Score = 41 (19.5 bits), Expect = 4.1e-12, Sum P(4) = 4.1e-12
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 981 TRENAEQFAKKIIKKLNDSNIE 1002
T E + KKI KK+ N+E
Sbjct: 1219 TMEMKAEAEKKIRKKIKSENVE 1240
Score = 38 (18.4 bits), Expect = 3.2e-11, Sum P(4) = 3.2e-11
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 328 IMLLKNKNSYDIQ-DTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTG 377
I+ L + +YDI T++ + ++ ++ R +MY+ D D TG
Sbjct: 234 IVALMVRRAYDIAGSTKDVKVFLNGNKL--PVKGFRSYVDMYLKDKLDETG 282
>SGD|S000005032 [details] [associations]
symbol:TOP2 "Topoisomerase II, relieves torsional strain in
DNA by cleaving and re" species:4932 "Saccharomyces cerevisiae"
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IMP]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA;IDA]
[GO:0006333 "chromatin assembly or disassembly" evidence=IMP]
[GO:0006265 "DNA topological change" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0000795 "synaptonemal complex"
evidence=IDA] [GO:0000019 "regulation of mitotic recombination"
evidence=IMP] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006259
"DNA metabolic process" evidence=IEA] [GO:0031055 "chromatin
remodeling at centromere" evidence=IMP] [GO:0097046 "replication
fork progression beyond termination site" evidence=IMP] [GO:0097047
"DNA replication termination region" evidence=IPI]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
SGD:S000005032 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739
GO:GO:0005524 EMBL:BK006947 GO:GO:0006333 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0009330 GO:GO:0070683
GO:GO:0006271 GO:GO:0000712 EMBL:X89016 GO:GO:0000795 EMBL:AF458969
EMBL:AF458971 EMBL:AF458972 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 GO:GO:0031055
GO:GO:0000019 KO:K02952 GO:GO:0097046 RefSeq:NP_014311.3
GeneID:855636 KEGG:sce:YNL088W KO:K03164 RefSeq:NP_014318.3
GeneID:855643 KEGG:sce:YNL081C HOGENOM:HOG000216693
GeneTree:ENSGT00390000016222 OMA:AKEYFQD OrthoDB:EOG4XPTPZ
EMBL:M13814 EMBL:Z71364 PIR:S57534 PDB:1BGW PDB:1BJT PDB:1PVG
PDB:1QZR PDB:2RGR PDB:3L4J PDB:3L4K PDB:4GFH PDBsum:1BGW
PDBsum:1BJT PDBsum:1PVG PDBsum:1QZR PDBsum:2RGR PDBsum:3L4J
PDBsum:3L4K PDBsum:4GFH DisProt:DP00076 ProteinModelPortal:P06786
SMR:P06786 DIP:DIP-2300N IntAct:P06786 MINT:MINT-495862
STRING:P06786 PaxDb:P06786 PeptideAtlas:P06786 EnsemblFungi:YNL088W
CYGD:YNL088w ChEMBL:CHEMBL5290 EvolutionaryTrace:P06786
NextBio:979854 ArrayExpress:P06786 Genevestigator:P06786
GermOnline:YNL088W GO:GO:0097047 Uniprot:P06786
Length = 1428
Score = 203 (76.5 bits), Expect = 3.6e-12, Sum P(3) = 3.6e-12
Identities = 70/280 (25%), Positives = 123/280 (43%)
Query: 629 LCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIK 688
+ F N+I GGTH+ + I + I++ ++ KK K + I+ + ++
Sbjct: 302 ISFVNSIATTMGGTHVNYITDQIVKKISEILK-----KKKKKSVKSFQIKNNMFIFINCL 356
Query: 689 IPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXX 748
I +P F SQTK +L ++ V+ I +++ + ++ L
Sbjct: 357 IENPAFTSQTKEQL-TTRVKDFGSRCEIP--LEYINKIM-KTDLATRMFEIADANEENAL 412
Query: 749 XXXXLTRKKNLIDDIELSTKLADCQE---KNPELCELYIVEGDSA-----GGSVKQGRDR 800
TRK + + KL D + K C L + EGDSA G GRD
Sbjct: 413 KKSDGTRKSRITN----YPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRD- 467
Query: 801 RFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTD 860
+ PLRGK+LN+ +A ++I+ + + + + + LRY ++IMTD
Sbjct: 468 -YYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTD 526
Query: 861 ADIDGAHIRALLLTFFYRKMPKLIEY-GYIYIAQPPLYKI 899
D DG+HI+ L++ F P L++ G++ P+ K+
Sbjct: 527 QDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKV 566
Score = 54 (24.1 bits), Expect = 3.6e-12, Sum P(3) = 3.6e-12
Identities = 47/189 (24%), Positives = 70/189 (37%)
Query: 377 GLHHFVFEILDNAIDESLAGYCTK-INVTIYXXXXXXXXXX-GRGXXXXXXXXXXXXXXR 434
GL EIL NA D + K I+V I+ G+G
Sbjct: 59 GLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYI-- 116
Query: 435 SAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLS-RFLQLTINRNKKIHYMEFRY 493
E++ L ++ + K++GG +G G N S F+ T + N
Sbjct: 117 --PEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLN---------- 164
Query: 494 GVLQNRIIKTINGISVS-PIKIIGDTNKQG---TKIHFWVDEKIFSNIEFHYEILKKRIR 549
V Q + K N +S+ P KI + K+G TK+ F D F E +IL R
Sbjct: 165 -VGQKYVQKWENNMSICHPPKIT--SYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRR 221
Query: 550 ELSFLNNGV 558
+ +N V
Sbjct: 222 RVYDINGSV 230
Score = 51 (23.0 bits), Expect = 3.6e-12, Sum P(3) = 3.6e-12
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 348 SASS-IQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESL 394
SAS Q + LE + KRP+ YIG L E D I++++
Sbjct: 7 SASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNV 54
Score = 38 (18.4 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 152 QDIRYYLNGLLLSFQK-KNII 171
+DI YLNG L + KN +
Sbjct: 231 RDINVYLNGKSLKIRNFKNYV 251
>UNIPROTKB|F1MDU7 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9913 "Bos
taurus" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0045870
"positive regulation of retroviral genome replication"
evidence=IEA] [GO:0043130 "ubiquitin binding" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0042826 "histone deacetylase binding"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0040016 "embryonic cleavage" evidence=IEA]
[GO:0030263 "apoptotic chromosome condensation" evidence=IEA]
[GO:0009330 "DNA topoisomerase complex (ATP-hydrolyzing)"
evidence=IEA] [GO:0008144 "drug binding" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0007059 "chromosome
segregation" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006266 "DNA ligation" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0005814
"centriole" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005080 "protein kinase
C binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059
GO:GO:0005654 GO:GO:0005730 GO:GO:0005814 GO:GO:0008144
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0043065 GO:GO:0030263 Gene3D:3.30.565.10 SUPFAM:SSF55874
GO:GO:0000793 GO:GO:0006266 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GO:GO:0045870 GeneTree:ENSGT00390000016222
OMA:MFKQTWM EMBL:DAAA02049137 IPI:IPI00923890
Ensembl:ENSBTAT00000061367 ArrayExpress:F1MDU7 Uniprot:F1MDU7
Length = 1533
Score = 210 (79.0 bits), Expect = 5.8e-12, Sum P(4) = 5.8e-12
Identities = 74/296 (25%), Positives = 125/296 (42%)
Query: 629 LCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIK 688
+ F N+I GG H+ + I + K ++ + K + + ++ + ++
Sbjct: 311 ISFVNSIATSKGGRHVDYVADQI---VTKLVDVVKKKNKGGVAVKAHQVKNHMWIFVNAL 367
Query: 689 IPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXX 748
I +P F+SQTK + + +V+ + F G + I
Sbjct: 368 IENPTFDSQTKENM-TLQVKSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQIQLNKK 426
Query: 749 XXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSA-----GGSVKQGRDRRFQ 803
K N I I D +N C L + EGDSA G GRD+
Sbjct: 427 CSAV---KHNRIKGIPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDK--Y 481
Query: 804 AVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXE---QDEFNLEKLRYHRIIIMTD 860
V PLRGK+LN+ +A ++I+ + + + +DE +L+ LRY +I+IMTD
Sbjct: 482 GVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTD 541
Query: 861 ADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNEC--YLRDDIEE 914
D DG+HI+ LL+ F + P L+ + ++ P+ K+ E Y + EE
Sbjct: 542 QDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEE 597
Score = 50 (22.7 bits), Expect = 5.8e-12, Sum P(4) = 5.8e-12
Identities = 26/115 (22%), Positives = 51/115 (44%)
Query: 50 DTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFT 109
D E + T GYG NI R + K T +++N K+G+ +
Sbjct: 152 DDEEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQT-WMDNMG---KAGEME-- 205
Query: 110 LQTLDAKEYPIMTLN---SKYDFEFTLSQKTLKCILNMVY-FSIAQQDIRYYLNG 160
L+ ++Y +T + SK+ + +L + + ++ Y + + +D++ YLNG
Sbjct: 206 LKPFSGEDYTCITFHPDLSKFKMQ-SLDKDIVALMVRRAYDIAGSTKDVKVYLNG 259
Score = 47 (21.6 bits), Expect = 7.1e-11, Sum P(4) = 7.1e-11
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 439 IVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLS-RFLQLTINRNKK 485
++ +L ++ K++GG +G G N S +F T +R K
Sbjct: 140 LIFGQLLTSSNYDDEEKKVTGGRNGYGAKLCNIFSTKFTVETASREYK 187
Score = 46 (21.3 bits), Expect = 5.8e-12, Sum P(4) = 5.8e-12
Identities = 22/100 (22%), Positives = 48/100 (48%)
Query: 469 VNGLSRFLQLTINRNKKIHYMEFRYGV---LQNRIIKTINGISVSPIKIIGDTNKQGTKI 525
+ G ++ +++ +N N+ + FR V L++++ +T N P+K+I + ++
Sbjct: 246 IAGSTKDVKVYLNGNR-LPVKGFRSYVDLYLKDKVDETGN-----PLKVIHEQVNHRWEV 299
Query: 526 HFWVDEKIFSNIEFHYEIL-KKRIRELSFLNNGVCITLID 564
+ EK F I F I K R + ++ + + L+D
Sbjct: 300 CLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVD 339
Score = 46 (21.3 bits), Expect = 5.8e-12, Sum P(4) = 5.8e-12
Identities = 29/120 (24%), Positives = 51/120 (42%)
Query: 890 YIAQPPL-YKIKYGNNE-CYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLID 947
Y+ PL Y K +E C LR++ E+E LK + L + ++E + +
Sbjct: 1127 YLLDMPLWYLTKEKKDELCKLRNEKEQELETLKRKSPS-DLWKEDLAAFVEELEVVEAKE 1185
Query: 948 KYNKTIEIVHRL-----KQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSNIE 1002
K ++ I + + K+ + IL + ++ T E + KKI KK+ N E
Sbjct: 1186 KQDEQIGLPGKGGKAKGKKTQMVEILPSPSGKRVIPRVTEEMKAEAEKKIKKKIKSENTE 1245
Score = 41 (19.5 bits), Expect = 1.8e-11, Sum P(4) = 1.8e-11
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 1083 LRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKD 1126
LRNE E Q + L +P LW+ + + L V+ K+
Sbjct: 1147 LRNEKE-----QELETLKRKSPSDLWKEDLAAFVEELEVVEAKE 1185
Score = 38 (18.4 bits), Expect = 7.1e-11, Sum P(4) = 7.1e-11
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 358 LEAVRKRPEMYIGDTSDGT 376
LE + RP+ YIG T
Sbjct: 40 LEHILLRPDTYIGSVESVT 58
>UNIPROTKB|E9PCY5 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007409 "axonogenesis" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005634 GO:GO:0001764 GO:GO:0005694 GO:GO:0030900
GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 HGNC:HGNC:11990 ChiTaRS:TOP2B EMBL:AC093416
IPI:IPI00925477 ProteinModelPortal:E9PCY5 SMR:E9PCY5
Ensembl:ENST00000424225 ArrayExpress:E9PCY5 Bgee:E9PCY5
Uniprot:E9PCY5
Length = 1150
Score = 186 (70.5 bits), Expect = 6.1e-12, Sum P(3) = 6.1e-12
Identities = 48/143 (33%), Positives = 74/143 (51%)
Query: 771 DCQEKNPELCELYIVEGDSA-----GGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIIL 825
D K+ C L + EGDSA G GRDR V PLRGK+LN+ +A ++I+
Sbjct: 462 DAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVREASHKQIME 519
Query: 826 SEQXXXXXXXXXXXXEQ---DEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPK 882
+ + ++ D +L+ LRY +I+IMTD D DG+HI+ LL+ F + P
Sbjct: 520 NAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPS 579
Query: 883 LIEYGYIYIAQPPLYKIKYGNNE 905
L+++G++ P+ K E
Sbjct: 580 LLKHGFLEEFITPIVKASKNKQE 602
Score = 70 (29.7 bits), Expect = 6.1e-12, Sum P(3) = 6.1e-12
Identities = 17/74 (22%), Positives = 36/74 (48%)
Query: 629 LCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIK 688
+ F N+I GG H+ + + + + K IE + K+ + + ++ + ++
Sbjct: 327 ISFVNSIATTKGGRHVDYV---VDQVVGKLIEVVKKKNKAGVSVKPFQVKNHIWVFINCL 383
Query: 689 IPDPKFNSQTKNKL 702
I +P F+SQTK +
Sbjct: 384 IENPTFDSQTKENM 397
Score = 47 (21.6 bits), Expect = 6.1e-12, Sum P(3) = 6.1e-12
Identities = 14/65 (21%), Positives = 29/65 (44%)
Query: 439 IVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQN 498
++ +L ++ + K++GG +G G N S + T+ K + F+ N
Sbjct: 156 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST--KFTVETACKEYKHSFKQ-TWMN 212
Query: 499 RIIKT 503
++KT
Sbjct: 213 NMMKT 217
>CGD|CAL0005199 [details] [associations]
symbol:TOP2 species:5476 "Candida albicans" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IGI;ISS]
[GO:0036244 "cellular response to neutral pH" evidence=IMP]
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0030447 "filamentous growth" evidence=IMP] [GO:0097047 "DNA
replication termination region" evidence=IEA] [GO:0000795
"synaptonemal complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0006406
"mRNA export from nucleus" evidence=IEA] [GO:0006333 "chromatin
assembly or disassembly" evidence=IEA] [GO:0044774 "mitotic DNA
integrity checkpoint" evidence=IEA] [GO:0000712 "resolution of
meiotic recombination intermediates" evidence=IEA] [GO:0097046
"replication fork progression beyond termination site"
evidence=IEA] [GO:0031055 "chromatin remodeling at centromere"
evidence=IEA] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IEA] [GO:0000019 "regulation of mitotic
recombination" evidence=IEA] [GO:0042790 "transcription of nuclear
large rRNA transcript from RNA polymerase I promoter" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 SMART:SM00387 SMART:SM00433
SMART:SM00434 CGD:CAL0005199 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 GO:GO:0036244 GO:GO:0036178
GO:GO:0009267 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0036170
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0006265 EMBL:AACQ01000084 EMBL:AACQ01000083 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 RefSeq:XP_715530.1 RefSeq:XP_715586.1
ProteinModelPortal:Q5A1E7 SMR:Q5A1E7 STRING:Q5A1E7 GeneID:3642722
GeneID:3642777 KEGG:cal:CaO19.10391 KEGG:cal:CaO19.2873
Uniprot:Q5A1E7
Length = 1461
Score = 210 (79.0 bits), Expect = 7.3e-12, Sum P(4) = 7.3e-12
Identities = 70/287 (24%), Positives = 128/287 (44%)
Query: 621 NNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREG 680
+ S+N+ + F N+I GGTH+ + I + + + + E KK K+ I +++R+
Sbjct: 345 DGSFNQ--VSFVNSIATTSGGTHVKYVSDQIINKLVETLSKKEKGKK-KLMIKPQEVRDN 401
Query: 681 LTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXX 740
+ ++ I +P F SQTK +L + + ++ + D L ++ ++
Sbjct: 402 MFLFINCLIENPAFTSQTKEQLTTKVSQFGGKDKFVAN--DNLINRILKTSIVDKIRAIA 459
Query: 741 XXXXXXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSA-----GGSVK 795
+RK + + L K+ C L + EG SA G
Sbjct: 460 NANEDKALQKADGSRKSRIKGQVNL-VDANKAGTKDGHNCTLILTEGLSAMNLAVAGLSV 518
Query: 796 QGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQ--DEFNLEKLRYH 853
GRD + PLRGK+LN+ +A ++I + + ++ N++ LRY
Sbjct: 519 VGRD--YYGCFPLRGKLLNVREASADQISKNAEINSLKQIIGLQHKKVYTAENIKSLRYG 576
Query: 854 RIIIMTDADIDGAHIRALLLTFFYRKMPKLIEY-GYIYIAQPPLYKI 899
I+IMTD D DG+HI+ L++ F P L++ G++ P+ K+
Sbjct: 577 HIMIMTDQDQDGSHIKGLIINFLETSFPGLLDIPGFLLEFITPIVKV 623
Score = 52 (23.4 bits), Expect = 7.3e-12, Sum P(4) = 7.3e-12
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 342 TQESSYSASSIQILEGLEAVRKRPEMYIG 370
T + + ++ + Q L LE + KRP+ YIG
Sbjct: 52 TPKPTNASETYQKLSQLEHILKRPDTYIG 80
Score = 46 (21.3 bits), Expect = 7.3e-12, Sum P(4) = 7.3e-12
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 438 EIVMTELHAGGKFNKNSYKISGGLHGIGLSCVN 470
E++ L ++ + K++GG +G G N
Sbjct: 168 ELIFGNLLTSSNYDDDQKKVTGGRNGFGAKLCN 200
Score = 42 (19.8 bits), Expect = 7.3e-12, Sum P(4) = 7.3e-12
Identities = 11/54 (20%), Positives = 27/54 (50%)
Query: 901 YGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDII--KENYFFKLIDKYNKT 952
Y + Y+ D+++ + ML + +K+I + + K+ L++++N T
Sbjct: 1064 YQKRKDYMTDNLQNQLLMLSEQARFIKMIIEKQLSVANKKKKQLVALLEEHNFT 1117
>UNIPROTKB|Q5A1E7 [details] [associations]
symbol:TOP2 "DNA topoisomerase 2" species:237561 "Candida
albicans SC5314" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IGI] [GO:0009267 "cellular
response to starvation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:0036244 "cellular response to neutral pH" evidence=IMP]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 SMART:SM00387 SMART:SM00433
SMART:SM00434 CGD:CAL0005199 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 GO:GO:0036244 GO:GO:0036178
GO:GO:0009267 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0036170
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0006265 EMBL:AACQ01000084 EMBL:AACQ01000083 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 RefSeq:XP_715530.1 RefSeq:XP_715586.1
ProteinModelPortal:Q5A1E7 SMR:Q5A1E7 STRING:Q5A1E7 GeneID:3642722
GeneID:3642777 KEGG:cal:CaO19.10391 KEGG:cal:CaO19.2873
Uniprot:Q5A1E7
Length = 1461
Score = 210 (79.0 bits), Expect = 7.3e-12, Sum P(4) = 7.3e-12
Identities = 70/287 (24%), Positives = 128/287 (44%)
Query: 621 NNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREG 680
+ S+N+ + F N+I GGTH+ + I + + + + E KK K+ I +++R+
Sbjct: 345 DGSFNQ--VSFVNSIATTSGGTHVKYVSDQIINKLVETLSKKEKGKK-KLMIKPQEVRDN 401
Query: 681 LTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXX 740
+ ++ I +P F SQTK +L + + ++ + D L ++ ++
Sbjct: 402 MFLFINCLIENPAFTSQTKEQLTTKVSQFGGKDKFVAN--DNLINRILKTSIVDKIRAIA 459
Query: 741 XXXXXXXXXXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSA-----GGSVK 795
+RK + + L K+ C L + EG SA G
Sbjct: 460 NANEDKALQKADGSRKSRIKGQVNL-VDANKAGTKDGHNCTLILTEGLSAMNLAVAGLSV 518
Query: 796 QGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQ--DEFNLEKLRYH 853
GRD + PLRGK+LN+ +A ++I + + ++ N++ LRY
Sbjct: 519 VGRD--YYGCFPLRGKLLNVREASADQISKNAEINSLKQIIGLQHKKVYTAENIKSLRYG 576
Query: 854 RIIIMTDADIDGAHIRALLLTFFYRKMPKLIEY-GYIYIAQPPLYKI 899
I+IMTD D DG+HI+ L++ F P L++ G++ P+ K+
Sbjct: 577 HIMIMTDQDQDGSHIKGLIINFLETSFPGLLDIPGFLLEFITPIVKV 623
Score = 52 (23.4 bits), Expect = 7.3e-12, Sum P(4) = 7.3e-12
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 342 TQESSYSASSIQILEGLEAVRKRPEMYIG 370
T + + ++ + Q L LE + KRP+ YIG
Sbjct: 52 TPKPTNASETYQKLSQLEHILKRPDTYIG 80
Score = 46 (21.3 bits), Expect = 7.3e-12, Sum P(4) = 7.3e-12
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 438 EIVMTELHAGGKFNKNSYKISGGLHGIGLSCVN 470
E++ L ++ + K++GG +G G N
Sbjct: 168 ELIFGNLLTSSNYDDDQKKVTGGRNGFGAKLCN 200
Score = 42 (19.8 bits), Expect = 7.3e-12, Sum P(4) = 7.3e-12
Identities = 11/54 (20%), Positives = 27/54 (50%)
Query: 901 YGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDII--KENYFFKLIDKYNKT 952
Y + Y+ D+++ + ML + +K+I + + K+ L++++N T
Sbjct: 1064 YQKRKDYMTDNLQNQLLMLSEQARFIKMIIEKQLSVANKKKKQLVALLEEHNFT 1117
>FB|FBgn0003732 [details] [associations]
symbol:Top2 "Topoisomerase 2" species:7227 "Drosophila
melanogaster" [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=NAS;IDA]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
[GO:0016590 "ACF complex" evidence=IDA] [GO:0008623 "CHRAC"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP;TAS] [GO:0007126
"meiosis" evidence=TAS] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005694 "chromosome"
evidence=IDA] [GO:0051310 "metaphase plate congression"
evidence=IDA] [GO:0000819 "sister chromatid segregation"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000182
"rDNA binding" evidence=IDA] [GO:0003696 "satellite DNA binding"
evidence=IDA] [GO:0006342 "chromatin silencing" evidence=IDA]
[GO:0007076 "mitotic chromosome condensation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
[GO:0009295 "nucleoid" evidence=IBA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IBA] [GO:0044774 "mitotic DNA integrity
checkpoint" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0007095 GO:GO:0007052 EMBL:AE014134 GO:GO:0003729
GO:GO:0006261 GO:GO:0006342 Gene3D:3.30.565.10 SUPFAM:SSF55874
GO:GO:0007076 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0006312 GO:GO:0008623 GO:GO:0070683
GO:GO:0000712 GO:GO:0003696 GO:GO:0051310 GO:GO:0000182
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 GO:GO:0000400 KO:K03164
GeneTree:ENSGT00390000016222 ChiTaRS:TOP2A OMA:AKEYFQD EMBL:X61209
PIR:S02160 RefSeq:NP_476760.1 UniGene:Dm.22886
ProteinModelPortal:P15348 SMR:P15348 STRING:P15348 PaxDb:P15348
PRIDE:P15348 EnsemblMetazoa:FBtr0081287 EnsemblMetazoa:FBtr0332320
GeneID:35225 KEGG:dme:Dmel_CG10223 CTD:35225 FlyBase:FBgn0003732
InParanoid:P15348 OrthoDB:EOG4HQC04 PhylomeDB:P15348
BindingDB:P15348 ChEMBL:CHEMBL2671 GenomeRNAi:35225 NextBio:792468
Bgee:P15348 GermOnline:CG10223 Uniprot:P15348
Length = 1447
Score = 213 (80.0 bits), Expect = 8.8e-12, Sum P(3) = 8.8e-12
Identities = 80/295 (27%), Positives = 125/295 (42%)
Query: 631 FTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIP 690
F N+I GG H+ + + I + +E + K I I +R L ++ I
Sbjct: 294 FVNSIATYKGGRHVDHV---VDNLIKQLLEVLKKKNKGGINIKPFQVRNHLWVFVNCLIE 350
Query: 691 DPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXXXX 750
+P F+SQTK + + K TL + N +S ++
Sbjct: 351 NPTFDSQTKENMTLQQ--KGFGSKC--TLSEKFINNMSKSGIVESVLAWAKFKAQNDIAK 406
Query: 751 XXLTRKKNLIDDIELSTKLADCQE---KNPELCELYIVEGDSAGGSVKQGRD---RRFQA 804
RK + I I KL D E KN C L + EGDSA G R
Sbjct: 407 TG-GRKSSKIKGIP---KLEDANEAGGKNSIKCTLILTEGDSAKSLAVSGLGVIGRDLYG 462
Query: 805 VLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQD---EFNLEKLRYHRIIIMTDA 861
V PLRGK+LN+ +A F+++ + + ++ E +L+ LRY +++IMTD
Sbjct: 463 VFPLRGKLLNVREANFKQLSENAEINNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIMTDQ 522
Query: 862 DIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNEC--YLRDDIEE 914
D DG+HI+ LL+ F + P+L+ ++ P+ K N E Y + EE
Sbjct: 523 DQDGSHIKGLLINFIHTNWPELLRLPFLEEFITPIVKATKKNEELSFYSLPEFEE 577
Score = 52 (23.4 bits), Expect = 8.8e-12, Sum P(3) = 8.8e-12
Identities = 21/86 (24%), Positives = 32/86 (37%)
Query: 439 IVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSR-FLQLTINRNKKIHYMEF---RYG 494
++ L +N + K++GG +G G N S F T R K + + G
Sbjct: 121 MIFGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTSFTVETATREYKKSFKQTWGNNMG 180
Query: 495 VLQNRIIKTINGISVSPIKIIGDTNK 520
+ IK NG + I D K
Sbjct: 181 KASDVQIKDFNGTDYTRITFSPDLAK 206
Score = 39 (18.8 bits), Expect = 8.8e-12, Sum P(3) = 8.8e-12
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 1083 LRNEAENMVIKQRYKGLGEMN------PGQLWETTMNPMIRCLLKVKIKD 1126
L E +N ++KQR L E+ P LW ++ + L +V+ K+
Sbjct: 1134 LTEEKKNELLKQRDTKLSELESLRKKTPEMLWLDDLDALESKLNEVEEKE 1183
Score = 37 (18.1 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 21/90 (23%), Positives = 42/90 (46%)
Query: 301 SNREKASEELEINYNGKDKNFIKF---LIK---------IMLLKNKNSYDIQDTQES-SY 347
+N KAS+ ++NG D I F L K I+ L ++ +YD+ + + S
Sbjct: 177 NNMGKASDVQIKDFNGTDYTRITFSPDLAKFKMDRLDEDIVALMSRRAYDVAASSKGVSV 236
Query: 348 SASSIQILEGLEAVRKRPEMYIGDTSDGTG 377
+ ++ G+ + +++I +T D +G
Sbjct: 237 FLNGNKL--GVRNFKDYIDLHIKNTDDDSG 264
>UNIPROTKB|P11388 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0040016
"embryonic cleavage" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0000819 "sister chromatid segregation" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IDA;IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] [GO:0048015 "phosphatidylinositol-mediated signaling"
evidence=NAS] [GO:0006260 "DNA replication" evidence=NAS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0005814 "centriole" evidence=IDA] [GO:0042826 "histone
deacetylase binding" evidence=IPI] [GO:0007059 "chromosome
segregation" evidence=IMP] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IDA] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0030263 "apoptotic chromosome condensation"
evidence=IDA] [GO:0019035 "viral integration complex" evidence=NAS]
[GO:0045070 "positive regulation of viral genome replication"
evidence=IMP] [GO:0045870 "positive regulation of retroviral genome
replication" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] [GO:0006266 "DNA ligation" evidence=IDA] [GO:0008144
"drug binding" evidence=IDA] [GO:0006974 "response to DNA damage
stimulus" evidence=IDA] [GO:0043065 "positive regulation of
apoptotic process" evidence=IDA] [GO:0005080 "protein kinase C
binding" evidence=IPI] [GO:0006281 "DNA repair" evidence=NAS]
[GO:0043130 "ubiquitin binding" evidence=IMP] [GO:0008301 "DNA
binding, bending" evidence=IDA] [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=TAS]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005737 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0005730 GO:GO:0042493 GO:GO:0000287 GO:GO:0008144
GO:GO:0007568 EMBL:CH471152 GO:GO:0043565 GO:GO:0006281
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006261
DrugBank:DB01204 GO:GO:0008301 GO:GO:0043065 GO:GO:0030263
DrugBank:DB00537 GO:GO:0048015 Gene3D:3.30.565.10 SUPFAM:SSF55874
DrugBank:DB01044 DrugBank:DB04967 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0043130 GO:GO:0009330 GO:GO:0070683 GO:GO:0000712
DrugBank:DB00445 GO:GO:0071107 DrugBank:DB00467 DrugBank:DB01137
DrugBank:DB00978 DrugBank:DB01059 DrugBank:DB01165 DrugBank:DB00487
DrugBank:DB00444 DrugBank:DB00997 DrugBank:DB00773 GO:GO:0000795
GO:GO:0006265 GO:GO:0043566 DrugBank:DB00276 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 EMBL:AC080112
KO:K03164 CTD:7153 HOVERGEN:HBG052998 EMBL:J04088 EMBL:AF071747
EMBL:AF071738 EMBL:AF071739 EMBL:AF071740 EMBL:AF071741
EMBL:AF071742 EMBL:AF071743 EMBL:AF071744 EMBL:AF071745
EMBL:AF071746 EMBL:AJ011741 EMBL:AJ011742 EMBL:AJ011743
EMBL:AJ011744 EMBL:AJ011745 EMBL:AJ011746 EMBL:AJ011747
EMBL:AJ011748 EMBL:AJ011749 EMBL:AJ011750 EMBL:AJ011751
EMBL:AJ011752 EMBL:AJ011753 EMBL:AJ011754 EMBL:AJ011755
EMBL:AJ011756 EMBL:AJ011757 EMBL:AJ011758 EMBL:AF285157
EMBL:AF285158 EMBL:BC140791 EMBL:AF285159 EMBL:AF069522
EMBL:AF064590 IPI:IPI00414101 IPI:IPI00478232 IPI:IPI00879004
IPI:IPI01011132 PIR:A40493 RefSeq:NP_001058.2 UniGene:Hs.156346
PDB:1LWZ PDB:1ZXM PDB:1ZXN PDB:4FM9 PDBsum:1LWZ PDBsum:1ZXM
PDBsum:1ZXN PDBsum:4FM9 ProteinModelPortal:P11388 SMR:P11388
DIP:DIP-33887N IntAct:P11388 MINT:MINT-98770 STRING:P11388
PhosphoSite:P11388 DMDM:13959709 UCD-2DPAGE:P11388 PaxDb:P11388
PRIDE:P11388 Ensembl:ENST00000423485 GeneID:7153 KEGG:hsa:7153
UCSC:uc002huq.3 GeneCards:GC17M038544 H-InvDB:HIX0013797
HGNC:HGNC:11989 HPA:CAB002448 HPA:HPA006458 HPA:HPA026773
MIM:126430 neXtProt:NX_P11388 PharmGKB:PA354 OrthoDB:EOG4KWJS0
BRENDA:5.99.1.3 BindingDB:P11388 ChEMBL:CHEMBL1806 DrugBank:DB00380
DrugBank:DB04576 DrugBank:DB01177 DrugBank:DB00218 DrugBank:DB01179
DrugBank:DB01208 DrugBank:DB00685 DrugBank:DB00385
EvolutionaryTrace:P11388 GenomeRNAi:7153 NextBio:27992
ArrayExpress:P11388 Bgee:P11388 CleanEx:HS_TOP2A
Genevestigator:P11388 GO:GO:0045870 Uniprot:P11388
Length = 1531
Score = 196 (74.1 bits), Expect = 1.1e-11, Sum P(4) = 1.1e-11
Identities = 54/169 (31%), Positives = 82/169 (48%)
Query: 756 KKNLIDDIELSTKLADCQEKNPELCELYIVEGDSA-----GGSVKQGRDRRFQAVLPLRG 810
K N I I D +N C L + EGDSA G GRD+ V PLRG
Sbjct: 431 KHNRIKGIPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRG 488
Query: 811 KVLNIEKARFEKIILSEQXXXXXXXXXXXXE---QDEFNLEKLRYHRIIIMTDADIDGAH 867
K+LN+ +A ++I+ + + + +DE +L+ LRY +I+IMTD D DG+H
Sbjct: 489 KILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSH 548
Query: 868 IRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNEC--YLRDDIEE 914
I+ LL+ F + P L+ + ++ P+ K+ E Y + EE
Sbjct: 549 IKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEE 597
Score = 64 (27.6 bits), Expect = 1.1e-11, Sum P(4) = 1.1e-11
Identities = 16/74 (21%), Positives = 34/74 (45%)
Query: 629 LCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIK 688
+ F N+I GG H+ + I + K ++ + K + + ++ + ++
Sbjct: 311 ISFVNSIATSKGGRHVDYVADQI---VTKLVDVVKKKNKGGVAVKAHQVKNHMWIFVNAL 367
Query: 689 IPDPKFNSQTKNKL 702
I +P F+SQTK +
Sbjct: 368 IENPTFDSQTKENM 381
Score = 49 (22.3 bits), Expect = 1.1e-11, Sum P(4) = 1.1e-11
Identities = 20/86 (23%), Positives = 36/86 (41%)
Query: 439 IVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLS-RFLQLTINRN-KKIHYMEF--RYG 494
++ +L ++ + K++GG +G G N S +F T +R KK+ + G
Sbjct: 140 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMG 199
Query: 495 VLQNRIIKTINGISVSPIKIIGDTNK 520
+K NG + I D +K
Sbjct: 200 RAGEMELKPFNGEDYTCITFQPDLSK 225
Score = 41 (19.5 bits), Expect = 1.1e-11, Sum P(4) = 1.1e-11
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 1083 LRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKD 1126
LRNE E Q L +P LW+ + I L V+ K+
Sbjct: 1147 LRNEKE-----QELDTLKRKSPSDLWKEDLATFIEELEAVEAKE 1185
Score = 39 (18.8 bits), Expect = 1.0e-10, Sum P(4) = 1.0e-10
Identities = 20/81 (24%), Positives = 37/81 (45%)
Query: 309 ELEIN-YNGKDKNFIKFLIKIMLLKNKN-SYDI-----QDTQESSYSASSIQI-LEG--- 357
E+E+ +NG+D I F + K ++ DI + + + S +++ L G
Sbjct: 203 EMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKL 262
Query: 358 -LEAVRKRPEMYIGDTSDGTG 377
++ R +MY+ D D TG
Sbjct: 263 PVKGFRSYVDMYLKDKLDETG 283
>UNIPROTKB|F1Q2M4 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9615 "Canis
lupus familiaris" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222 EMBL:AAEX03006463
Ensembl:ENSCAFT00000025539 Uniprot:F1Q2M4
Length = 1533
Score = 196 (74.1 bits), Expect = 1.3e-11, Sum P(4) = 1.3e-11
Identities = 54/169 (31%), Positives = 82/169 (48%)
Query: 756 KKNLIDDIELSTKLADCQEKNPELCELYIVEGDSA-----GGSVKQGRDRRFQAVLPLRG 810
K N I I D +N C L + EGDSA G GRD+ V PLRG
Sbjct: 431 KHNRIKGIPKLDDANDAGGRNSNECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRG 488
Query: 811 KVLNIEKARFEKIILSEQXXXXXXXXXXXXEQ---DEFNLEKLRYHRIIIMTDADIDGAH 867
K+LN+ +A ++I+ + + ++ DE +L+ LRY +I+IMTD D DG+H
Sbjct: 489 KILNVREASHKQIMENAEINNIIKIVGLQYKKNYDDEDSLKTLRYGKIMIMTDQDQDGSH 548
Query: 868 IRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNEC--YLRDDIEE 914
I+ LL+ F + P L+ + ++ P+ K+ E Y + EE
Sbjct: 549 IKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEE 597
Score = 65 (27.9 bits), Expect = 1.3e-11, Sum P(4) = 1.3e-11
Identities = 16/74 (21%), Positives = 34/74 (45%)
Query: 629 LCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIK 688
+ F N+I GG H+ + I + K ++ + K + + ++ + ++
Sbjct: 311 ISFVNSIATSKGGRHVDYIADQI---VTKLVDVVKKKNKGGVAVKAHQVKNHMWIFVNAL 367
Query: 689 IPDPKFNSQTKNKL 702
I +P F+SQTK +
Sbjct: 368 IENPTFDSQTKENM 381
Score = 50 (22.7 bits), Expect = 8.2e-10, Sum P(3) = 8.2e-10
Identities = 24/100 (24%), Positives = 48/100 (48%)
Query: 469 VNGLSRFLQLTINRNKKIHYMEFRYGV---LQNRIIKTINGISVSPIKIIGDTNKQGTKI 525
+ G ++ +++ +N NK + FR V L++++ +T N P+KII + ++
Sbjct: 246 IAGSTKDVKVFLNGNK-LPVKGFRSYVDMYLKDKVDETGN-----PLKIIHEQVNPRWEV 299
Query: 526 HFWVDEKIFSNIEFHYEIL-KKRIRELSFLNNGVCITLID 564
+ EK F I F I K R + ++ + + L+D
Sbjct: 300 CLTMSEKGFQQISFVNSIATSKGGRHVDYIADQIVTKLVD 339
Score = 48 (22.0 bits), Expect = 1.3e-11, Sum P(4) = 1.3e-11
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 439 IVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLS-RFLQLTINRNKK 485
++ +L ++ + K++GG +G G N S +F T +R K
Sbjct: 140 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYK 187
Score = 40 (19.1 bits), Expect = 1.3e-11, Sum P(4) = 1.3e-11
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 1083 LRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKD 1126
LRNE E Q + L +P LW+ + + L V+ K+
Sbjct: 1148 LRNEKE-----QELETLKRKSPTDLWKEDLATFVEELEAVETKE 1186
Score = 39 (18.8 bits), Expect = 1.0e-10, Sum P(4) = 1.0e-10
Identities = 20/81 (24%), Positives = 37/81 (45%)
Query: 309 ELEIN-YNGKDKNFIKFLIKIMLLKNKN-SYDI-----QDTQESSYSASSIQI-LEG--- 357
E+E+ +NG+D I F + K ++ DI + + + S +++ L G
Sbjct: 203 EMELRPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKL 262
Query: 358 -LEAVRKRPEMYIGDTSDGTG 377
++ R +MY+ D D TG
Sbjct: 263 PVKGFRSYVDMYLKDKVDETG 283
>UNIPROTKB|J9PAY8 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9615 "Canis
lupus familiaris" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222 OMA:MFKQTWM
EMBL:AAEX03006463 Ensembl:ENSCAFT00000046104 Uniprot:J9PAY8
Length = 1541
Score = 196 (74.1 bits), Expect = 1.4e-11, Sum P(4) = 1.4e-11
Identities = 54/169 (31%), Positives = 82/169 (48%)
Query: 756 KKNLIDDIELSTKLADCQEKNPELCELYIVEGDSA-----GGSVKQGRDRRFQAVLPLRG 810
K N I I D +N C L + EGDSA G GRD+ V PLRG
Sbjct: 440 KHNRIKGIPKLDDANDAGGRNSNECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRG 497
Query: 811 KVLNIEKARFEKIILSEQXXXXXXXXXXXXEQ---DEFNLEKLRYHRIIIMTDADIDGAH 867
K+LN+ +A ++I+ + + ++ DE +L+ LRY +I+IMTD D DG+H
Sbjct: 498 KILNVREASHKQIMENAEINNIIKIVGLQYKKNYDDEDSLKTLRYGKIMIMTDQDQDGSH 557
Query: 868 IRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNEC--YLRDDIEE 914
I+ LL+ F + P L+ + ++ P+ K+ E Y + EE
Sbjct: 558 IKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEE 606
Score = 65 (27.9 bits), Expect = 1.4e-11, Sum P(4) = 1.4e-11
Identities = 16/74 (21%), Positives = 34/74 (45%)
Query: 629 LCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIK 688
+ F N+I GG H+ + I + K ++ + K + + ++ + ++
Sbjct: 320 ISFVNSIATSKGGRHVDYIADQI---VTKLVDVVKKKNKGGVAVKAHQVKNHMWIFVNAL 376
Query: 689 IPDPKFNSQTKNKL 702
I +P F+SQTK +
Sbjct: 377 IENPTFDSQTKENM 390
Score = 50 (22.7 bits), Expect = 8.4e-10, Sum P(3) = 8.4e-10
Identities = 24/100 (24%), Positives = 48/100 (48%)
Query: 469 VNGLSRFLQLTINRNKKIHYMEFRYGV---LQNRIIKTINGISVSPIKIIGDTNKQGTKI 525
+ G ++ +++ +N NK + FR V L++++ +T N P+KII + ++
Sbjct: 255 IAGSTKDVKVFLNGNK-LPVKGFRSYVDMYLKDKVDETGN-----PLKIIHEQVNPRWEV 308
Query: 526 HFWVDEKIFSNIEFHYEIL-KKRIRELSFLNNGVCITLID 564
+ EK F I F I K R + ++ + + L+D
Sbjct: 309 CLTMSEKGFQQISFVNSIATSKGGRHVDYIADQIVTKLVD 348
Score = 48 (22.0 bits), Expect = 1.4e-11, Sum P(4) = 1.4e-11
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 439 IVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLS-RFLQLTINRNKK 485
++ +L ++ + K++GG +G G N S +F T +R K
Sbjct: 149 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYK 196
Score = 40 (19.1 bits), Expect = 1.4e-11, Sum P(4) = 1.4e-11
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 1083 LRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKD 1126
LRNE E Q + L +P LW+ + + L V+ K+
Sbjct: 1156 LRNEKE-----QELETLKRKSPTDLWKEDLATFVEELEAVETKE 1194
Score = 39 (18.8 bits), Expect = 1.1e-10, Sum P(4) = 1.1e-10
Identities = 20/81 (24%), Positives = 37/81 (45%)
Query: 309 ELEIN-YNGKDKNFIKFLIKIMLLKNKN-SYDI-----QDTQESSYSASSIQI-LEG--- 357
E+E+ +NG+D I F + K ++ DI + + + S +++ L G
Sbjct: 212 EMELRPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKL 271
Query: 358 -LEAVRKRPEMYIGDTSDGTG 377
++ R +MY+ D D TG
Sbjct: 272 PVKGFRSYVDMYLKDKVDETG 292
>UNIPROTKB|Q02880 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2-beta" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0001764 "neuron migration"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0000712 "resolution of
meiotic recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IDA;IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IDA;IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA] [GO:0005080
"protein kinase C binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0042826
"histone deacetylase binding" evidence=IPI] [GO:0000792
"heterochromatin" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0008022
"protein C-terminus binding" evidence=IPI] [GO:0046982 "protein
heterodimerization activity" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0019899 "enzyme binding" evidence=IPI]
[GO:0071778 "WINAC complex" evidence=IDA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005654 GO:GO:0030900 GO:GO:0003682
GO:GO:0006261 GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0071778 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 HOVERGEN:HBG052998 CTD:7155 EMBL:X68060
EMBL:X71911 EMBL:Z15111 EMBL:Z15115 EMBL:M27504 EMBL:AJ011721
EMBL:AJ011722 EMBL:AJ011723 EMBL:AJ011724 EMBL:AJ011725
EMBL:AJ011726 EMBL:AJ011727 EMBL:AJ011728 EMBL:AJ011729
EMBL:AJ011730 EMBL:AJ011731 EMBL:AJ011732 EMBL:X53662 EMBL:U54831
IPI:IPI00027280 IPI:IPI00217709 PIR:S26730 RefSeq:NP_001059.2
UniGene:Hs.475733 PDB:3QX3 PDBsum:3QX3 ProteinModelPortal:Q02880
SMR:Q02880 IntAct:Q02880 STRING:Q02880 PhosphoSite:Q02880
DMDM:20141946 PaxDb:Q02880 PRIDE:Q02880 Ensembl:ENST00000264331
Ensembl:ENST00000435706 GeneID:7155 KEGG:hsa:7155 UCSC:uc003cdj.2
UCSC:uc011awn.1 GeneCards:GC03M025639 H-InvDB:HIX0030807
HGNC:HGNC:11990 HPA:CAB004601 HPA:HPA024120 MIM:126431
neXtProt:NX_Q02880 PharmGKB:PA36672 InParanoid:Q02880 OMA:AKEYFQD
PhylomeDB:Q02880 BindingDB:Q02880 ChEMBL:CHEMBL3396 ChiTaRS:TOP2B
GenomeRNAi:7155 NextBio:27998 ArrayExpress:Q02880 Bgee:Q02880
CleanEx:HS_TOP2B Genevestigator:Q02880 GermOnline:ENSG00000077097
Uniprot:Q02880
Length = 1626
Score = 186 (70.5 bits), Expect = 2.1e-11, Sum P(3) = 2.1e-11
Identities = 48/143 (33%), Positives = 74/143 (51%)
Query: 771 DCQEKNPELCELYIVEGDSA-----GGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIIL 825
D K+ C L + EGDSA G GRDR V PLRGK+LN+ +A ++I+
Sbjct: 467 DAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVREASHKQIME 524
Query: 826 SEQXXXXXXXXXXXXEQ---DEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPK 882
+ + ++ D +L+ LRY +I+IMTD D DG+HI+ LL+ F + P
Sbjct: 525 NAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPS 584
Query: 883 LIEYGYIYIAQPPLYKIKYGNNE 905
L+++G++ P+ K E
Sbjct: 585 LLKHGFLEEFITPIVKASKNKQE 607
Score = 70 (29.7 bits), Expect = 2.1e-11, Sum P(3) = 2.1e-11
Identities = 17/74 (22%), Positives = 36/74 (48%)
Query: 629 LCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIK 688
+ F N+I GG H+ + + + + K IE + K+ + + ++ + ++
Sbjct: 332 ISFVNSIATTKGGRHVDYV---VDQVVGKLIEVVKKKNKAGVSVKPFQVKNHIWVFINCL 388
Query: 689 IPDPKFNSQTKNKL 702
I +P F+SQTK +
Sbjct: 389 IENPTFDSQTKENM 402
Score = 47 (21.6 bits), Expect = 2.1e-11, Sum P(3) = 2.1e-11
Identities = 14/65 (21%), Positives = 29/65 (44%)
Query: 439 IVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQN 498
++ +L ++ + K++GG +G G N S + T+ K + F+ N
Sbjct: 161 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST--KFTVETACKEYKHSFKQ-TWMN 217
Query: 499 RIIKT 503
++KT
Sbjct: 218 NMMKT 222
>MGI|MGI:98790 [details] [associations]
symbol:Top2a "topoisomerase (DNA) II alpha" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=ISO] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003916 "DNA
topoisomerase activity" evidence=ISO] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISO;IGI;IDA] [GO:0005080 "protein kinase C binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006200 "ATP catabolic process"
evidence=IGI;IDA] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=ISO;IDA] [GO:0006266
"DNA ligation" evidence=ISO] [GO:0006312 "mitotic recombination"
evidence=IBA] [GO:0006974 "response to DNA damage stimulus"
evidence=ISO] [GO:0007059 "chromosome segregation"
evidence=ISO;IMP;IDA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] [GO:0008144 "drug binding" evidence=ISO] [GO:0008301
"DNA binding, bending" evidence=ISO] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISO] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0019899 "enzyme binding" evidence=ISO]
[GO:0030261 "chromosome condensation" evidence=IMP] [GO:0030263
"apoptotic chromosome condensation" evidence=ISO] [GO:0040016
"embryonic cleavage" evidence=IMP] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0042826 "histone
deacetylase binding" evidence=ISO] [GO:0043065 "positive regulation
of apoptotic process" evidence=ISO] [GO:0043130 "ubiquitin binding"
evidence=ISO] [GO:0043234 "protein complex" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=ISO]
[GO:0043566 "structure-specific DNA binding" evidence=ISO]
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IBA]
[GO:0045070 "positive regulation of viral genome replication"
evidence=ISO] [GO:0045870 "positive regulation of retroviral genome
replication" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 MGI:MGI:98790 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005654 GO:GO:0005730 GO:GO:0005814 GO:GO:0042493
GO:GO:0000287 GO:GO:0008144 GO:GO:0007568 GO:GO:0043565
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0006261 GO:GO:0008301 GO:GO:0043065 GO:GO:0030263
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0030261 GO:GO:0006266
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0009330 GO:GO:0070683
GO:GO:0000712 GO:GO:0071107 EMBL:AL591067 GO:GO:0000795
GO:GO:0006265 GO:GO:0043566 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164 CTD:7153
HOGENOM:HOG000216693 HOVERGEN:HBG052998 OrthoDB:EOG4KWJS0
GO:GO:0045870 EMBL:D12513 EMBL:U01915 IPI:IPI00122223 PIR:JS0703
RefSeq:NP_035753.2 UniGene:Mm.4237 ProteinModelPortal:Q01320
SMR:Q01320 IntAct:Q01320 STRING:Q01320 PhosphoSite:Q01320
PaxDb:Q01320 PRIDE:Q01320 Ensembl:ENSMUST00000068031 GeneID:21973
KEGG:mmu:21973 UCSC:uc007lid.1 GeneTree:ENSGT00390000016222
InParanoid:Q01320 OMA:MFKQTWM BindingDB:Q01320 ChEMBL:CHEMBL3586
ChiTaRS:TOP2A NextBio:301670 Bgee:Q01320 CleanEx:MM_TOP2A
Genevestigator:Q01320 GermOnline:ENSMUSG00000020914 Uniprot:Q01320
Length = 1528
Score = 205 (77.2 bits), Expect = 5.9e-11, Sum P(3) = 5.9e-11
Identities = 74/299 (24%), Positives = 132/299 (44%)
Query: 629 LCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIK 688
+ F N+I GG H+ + I ++K ++ + K + + ++ + ++
Sbjct: 310 ISFVNSIATSKGGRHVDYVADQI---VSKLVDVVKKKNKGGVAVKAHQVKNHMWIFVNAL 366
Query: 689 IPDPKFNSQTK-NKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXX 747
I +P F+SQTK N + ++ ++ K + + ES ++
Sbjct: 367 IENPTFDSQTKENMTLQAKSFGSTCQLSEKFIKAAIGCGIVES-ILNWVKFKAQIQLNKK 425
Query: 748 XXXXXLTRKKNL--IDDIELSTKLADCQEKNPELCELYIVEGDSA-----GGSVKQGRDR 800
T+ K + +DD D +N C L + EGDSA G GRD+
Sbjct: 426 CSAVKHTKIKGIPKLDDAN------DAGSRNSTECTLILTEGDSAKTLAVSGLGVVGRDK 479
Query: 801 RFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXE---QDEFNLEKLRYHRIII 857
V PLRGK+LN+ +A ++I+ + + + +DE +L+ LRY +I+I
Sbjct: 480 --YGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMI 537
Query: 858 MTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNEC--YLRDDIEE 914
MTD D DG+HI+ LL+ F + P L+ + ++ P+ K+ E Y + EE
Sbjct: 538 MTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEIAFYSLPEFEE 596
Score = 48 (22.0 bits), Expect = 5.9e-11, Sum P(3) = 5.9e-11
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 439 IVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLS-RFLQLTINRNKK 485
++ +L ++ + K++GG +G G N S +F T +R K
Sbjct: 139 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYK 186
Score = 44 (20.5 bits), Expect = 5.9e-11, Sum P(3) = 5.9e-11
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 1082 YLRNEAENMVIKQRYKGLGEMN------PGQLWETTMNPMIRCLLKVKIKD 1126
YL E ++ + KQR + E+N P LW+ + I L V+ K+
Sbjct: 1132 YLTKEKKDELCKQRNEKEQELNTLKQKSPSDLWKEDLAVFIEELEVVEAKE 1182
Score = 39 (18.8 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 981 TRENAEQFAKKIIKKLNDSNIE 1002
T E + KKI KK+ N+E
Sbjct: 1222 TVEMKAEAEKKIRKKIKSENVE 1243
>WB|WBGene00019884 [details] [associations]
symbol:R05D3.12 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000003 "reproduction" evidence=IMP] [GO:0007276 "gamete
generation" evidence=IMP] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 EMBL:FO081667 GO:GO:0007276
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880
HOGENOM:HOG000216693 GeneTree:ENSGT00390000016222
RefSeq:NP_001129839.2 RefSeq:NP_001254958.1 RefSeq:NP_741252.2
ProteinModelPortal:P34534 SMR:P34534 PaxDb:P34534
EnsemblMetazoa:R05D3.12a GeneID:259522 KEGG:cel:CELE_R05D3.12
UCSC:R05D3.1 CTD:259522 WormBase:R05D3.12a WormBase:R05D3.12b
WormBase:R05D3.12c InParanoid:P34534 OMA:KLEDAEW NextBio:891486
Uniprot:P34534
Length = 1170
Score = 201 (75.8 bits), Expect = 5.9e-11, Sum P(3) = 5.9e-11
Identities = 75/286 (26%), Positives = 121/286 (42%)
Query: 628 ILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSI 687
I+ F NNI GG+H+ + I I K I +++ +K + I+ L+ ++
Sbjct: 329 IVSFVNNINTEKGGSHVDYVMDKIVNII-KPIVDSKLGDPTK-SVKPAVIKNNLSIFINC 386
Query: 688 KIPDPKFNSQTKNKLVSSEVR-KPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXX 746
I +P F SQTK L + + E K ++ ++ S LI
Sbjct: 387 LIENPSFESQTKETLTTKAKNFGSIFECDAKKTAEWAEQ----SGLI-----EDIVEEVL 437
Query: 747 XXXXXXLTRKKNLIDDIELSTKLADCQ----EKNPELCELYIVEGDSAGGSVKQGRD--- 799
L K+ + + KL D + E C L + EGDSA G +
Sbjct: 438 NMKKKKLPGKRVSVSSVRDIVKLEDAEWAGITGTAEKCTLILTEGDSAKALALAGLEVLG 497
Query: 800 RRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQ-DEFNLEKLRYHRIIIM 858
R V PL+GK+LN+ + +E+ E + E LRY R++I+
Sbjct: 498 RETYGVFPLKGKLLNVSNLDDARASKNEEISNLLRILGLKFEDSNSITRESLRYGRLLIL 557
Query: 859 TDADIDGAHIRALLLTFFYRKMPKLIEY-GYIYIAQPPLYKIKYGN 903
D D DG+HI+ L++ F ++ P L+ G+I + PL K K G+
Sbjct: 558 ADQDEDGSHIKGLIVNFIHKFWPSLVHTDGFIQSFRTPLLKAKKGD 603
Score = 53 (23.7 bits), Expect = 5.9e-11, Sum P(3) = 5.9e-11
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 329 MLLKNKNSY--DIQDTQESSYSASSIQILEGLEAVRKRPEMYIG 370
++LKN S+ +I T +S +A+ + E V RP+ YIG
Sbjct: 22 VVLKNTRSFCNNIPSTSFASEAAAKYEKKSPTEHVLLRPDTYIG 65
Score = 39 (18.8 bits), Expect = 5.9e-11, Sum P(3) = 5.9e-11
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 908 LRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEI 955
+R D+ E+R ++ KLI +EN + F +++ N TIEI
Sbjct: 1037 VRRDLYEKRLKIQKEECEAKLIYVEN-----QLNFIEMVT--NGTIEI 1077
>UNIPROTKB|P34534 [details] [associations]
symbol:R05D3.12 "Putative DNA topoisomerase 2,
mitochondrial" species:6239 "Caenorhabditis elegans" [GO:0009295
"nucleoid" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0000819 "sister chromatid segregation" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:FO081667 GO:GO:0007276 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 HOGENOM:HOG000216693
GeneTree:ENSGT00390000016222 RefSeq:NP_001129839.2
RefSeq:NP_001254958.1 RefSeq:NP_741252.2 ProteinModelPortal:P34534
SMR:P34534 PaxDb:P34534 EnsemblMetazoa:R05D3.12a GeneID:259522
KEGG:cel:CELE_R05D3.12 UCSC:R05D3.1 CTD:259522 WormBase:R05D3.12a
WormBase:R05D3.12b WormBase:R05D3.12c InParanoid:P34534 OMA:KLEDAEW
NextBio:891486 Uniprot:P34534
Length = 1170
Score = 201 (75.8 bits), Expect = 5.9e-11, Sum P(3) = 5.9e-11
Identities = 75/286 (26%), Positives = 121/286 (42%)
Query: 628 ILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSI 687
I+ F NNI GG+H+ + I I K I +++ +K + I+ L+ ++
Sbjct: 329 IVSFVNNINTEKGGSHVDYVMDKIVNII-KPIVDSKLGDPTK-SVKPAVIKNNLSIFINC 386
Query: 688 KIPDPKFNSQTKNKLVSSEVR-KPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXX 746
I +P F SQTK L + + E K ++ ++ S LI
Sbjct: 387 LIENPSFESQTKETLTTKAKNFGSIFECDAKKTAEWAEQ----SGLI-----EDIVEEVL 437
Query: 747 XXXXXXLTRKKNLIDDIELSTKLADCQ----EKNPELCELYIVEGDSAGGSVKQGRD--- 799
L K+ + + KL D + E C L + EGDSA G +
Sbjct: 438 NMKKKKLPGKRVSVSSVRDIVKLEDAEWAGITGTAEKCTLILTEGDSAKALALAGLEVLG 497
Query: 800 RRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQ-DEFNLEKLRYHRIIIM 858
R V PL+GK+LN+ + +E+ E + E LRY R++I+
Sbjct: 498 RETYGVFPLKGKLLNVSNLDDARASKNEEISNLLRILGLKFEDSNSITRESLRYGRLLIL 557
Query: 859 TDADIDGAHIRALLLTFFYRKMPKLIEY-GYIYIAQPPLYKIKYGN 903
D D DG+HI+ L++ F ++ P L+ G+I + PL K K G+
Sbjct: 558 ADQDEDGSHIKGLIVNFIHKFWPSLVHTDGFIQSFRTPLLKAKKGD 603
Score = 53 (23.7 bits), Expect = 5.9e-11, Sum P(3) = 5.9e-11
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 329 MLLKNKNSY--DIQDTQESSYSASSIQILEGLEAVRKRPEMYIG 370
++LKN S+ +I T +S +A+ + E V RP+ YIG
Sbjct: 22 VVLKNTRSFCNNIPSTSFASEAAAKYEKKSPTEHVLLRPDTYIG 65
Score = 39 (18.8 bits), Expect = 5.9e-11, Sum P(3) = 5.9e-11
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 908 LRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEI 955
+R D+ E+R ++ KLI +EN + F +++ N TIEI
Sbjct: 1037 VRRDLYEKRLKIQKEECEAKLIYVEN-----QLNFIEMVT--NGTIEI 1077
>UNIPROTKB|O46374 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:9823 "Sus
scrofa" [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISS] [GO:0000287 "magnesium ion binding" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045870 "positive regulation of
retroviral genome replication" evidence=IEA] [GO:0043130 "ubiquitin
binding" evidence=IEA] [GO:0043065 "positive regulation of
apoptotic process" evidence=IEA] [GO:0042826 "histone deacetylase
binding" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0040016 "embryonic cleavage"
evidence=IEA] [GO:0030263 "apoptotic chromosome condensation"
evidence=IEA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IEA] [GO:0008144 "drug binding"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006266 "DNA ligation" evidence=IEA] [GO:0005814 "centriole"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005080 "protein kinase C binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059 GO:GO:0005654
GO:GO:0005730 GO:GO:0005814 GO:GO:0000287 GO:GO:0008144
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0008301 GO:GO:0043065 GO:GO:0030263 Gene3D:3.30.565.10
SUPFAM:SSF55874 GO:GO:0000793 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 eggNOG:COG0187 Gene3D:3.40.50.670
PROSITE:PS50880 KO:K03164 HOGENOM:HOG000216693 HOVERGEN:HBG052998
OrthoDB:EOG4KWJS0 GO:GO:0045870 GeneTree:ENSGT00390000016222
OMA:MFKQTWM EMBL:AB009387 RefSeq:NP_999049.1 UniGene:Ssc.14506
ProteinModelPortal:O46374 SMR:O46374 STRING:O46374 PRIDE:O46374
Ensembl:ENSSSCT00000019023 GeneID:396917 KEGG:ssc:396917
CTD:100038293 Uniprot:O46374
Length = 1533
Score = 208 (78.3 bits), Expect = 7.3e-11, Sum P(4) = 7.3e-11
Identities = 74/296 (25%), Positives = 125/296 (42%)
Query: 629 LCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIK 688
+ F N+I GG H+ + I + K ++ + K + + ++ + ++
Sbjct: 311 ISFVNSIATSKGGRHVDYVADQI---VAKLVDVVKKKNKGGVAVKAHQVKNHMWIFVNAL 367
Query: 689 IPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXX 748
I +P F+SQTK + + +V+ + F G + I
Sbjct: 368 IENPTFDSQTKENM-TLQVKSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQVQLNKK 426
Query: 749 XXXXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSA-----GGSVKQGRDRRFQ 803
K N I I D +N C L + EGDSA G GRD+
Sbjct: 427 CSAV---KHNRIKGIPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDK--Y 481
Query: 804 AVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXE---QDEFNLEKLRYHRIIIMTD 860
V PLRGK+LN+ +A ++I+ + + + +DE +L+ LRY +I+IMTD
Sbjct: 482 GVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTD 541
Query: 861 ADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNEC--YLRDDIEE 914
D DG+HI+ LL+ F + P L+ + ++ P+ K+ E Y + EE
Sbjct: 542 QDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEE 597
Score = 50 (22.7 bits), Expect = 7.3e-11, Sum P(4) = 7.3e-11
Identities = 24/100 (24%), Positives = 48/100 (48%)
Query: 469 VNGLSRFLQLTINRNKKIHYMEFRYGV---LQNRIIKTINGISVSPIKIIGDTNKQGTKI 525
+ G ++ +++ +N NK + FR V L++++ +T N P+KII + ++
Sbjct: 246 IAGSTKDVKVFLNGNK-LPVKGFRSYVDLYLKDKVDETGN-----PLKIIHEQVNHRWEV 299
Query: 526 HFWVDEKIFSNIEFHYEIL-KKRIRELSFLNNGVCITLID 564
+ EK F I F I K R + ++ + + L+D
Sbjct: 300 CLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVAKLVD 339
Score = 48 (22.0 bits), Expect = 1.1e-10, Sum P(4) = 1.1e-10
Identities = 20/86 (23%), Positives = 35/86 (40%)
Query: 439 IVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLS-RFLQLTINRN-KKIHYMEF--RYG 494
++ +L ++ K++GG +G G N S +F T +R KK+ + G
Sbjct: 140 LIFGQLLTSSNYDDEEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMG 199
Query: 495 VLQNRIIKTINGISVSPIKIIGDTNK 520
+K NG + I D +K
Sbjct: 200 RAGEMELKPFNGEDYTCITFHPDLSK 225
Score = 43 (20.2 bits), Expect = 7.3e-11, Sum P(4) = 7.3e-11
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 1083 LRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKD 1126
LRNE E Q + L +P LW+ + I L V+ K+
Sbjct: 1147 LRNEKE-----QELETLKRKSPSDLWKEDLAAFIEELEAVEAKE 1185
Score = 40 (19.1 bits), Expect = 7.3e-11, Sum P(4) = 7.3e-11
Identities = 17/70 (24%), Positives = 34/70 (48%)
Query: 262 VNRNKLLRSLQ-RISI--ISNDKLKGVRLVIKPNYLKITVSSSNREKASEELEINYNGKD 318
VN+ K + R+SI I K + ++++P+ +V S ++ + +I N ++
Sbjct: 15 VNKTKKNEEAKKRLSIERIYQKKTQLEHILLRPDTYIGSVESVTQQMWVYDEDIGINYRE 74
Query: 319 KNFIKFLIKI 328
F+ L KI
Sbjct: 75 VTFVPGLYKI 84
Score = 38 (18.4 bits), Expect = 1.1e-10, Sum P(4) = 1.1e-10
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 358 LEAVRKRPEMYIGDTSDGT 376
LE + RP+ YIG T
Sbjct: 40 LEHILLRPDTYIGSVESVT 58
Score = 38 (18.4 bits), Expect = 2.3e-10, Sum P(4) = 2.3e-10
Identities = 29/120 (24%), Positives = 50/120 (41%)
Query: 890 YIAQPPL-YKIKYGNNE-CYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLID 947
Y+ PL Y K +E C LR++ E+E LK + L + I+E + +
Sbjct: 1127 YLLDMPLWYLTKEKKDELCKLRNEKEQELETLKRKSPS-DLWKEDLAAFIEELEAVEAKE 1185
Query: 948 KYNKTIEIVHRL-----KQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSNIE 1002
K ++ I + + K+ +L + ++ T E + KKI KK+ N E
Sbjct: 1186 KQDEQIGLPGKGGKAKGKKTQMAEVLPSPCGKRVIPRVTVEMKAEAEKKIKKKIKSENTE 1245
>UNIPROTKB|F1NR58 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222 IPI:IPI00819818
EMBL:AADN02001127 Ensembl:ENSGALT00000037716 ArrayExpress:F1NR58
Uniprot:F1NR58
Length = 1627
Score = 187 (70.9 bits), Expect = 7.5e-11, Sum P(4) = 7.5e-11
Identities = 46/134 (34%), Positives = 71/134 (52%)
Query: 780 CELYIVEGDSA-----GGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXX 834
C L + EGDSA G GRDR V PLRGK+LN+ +A ++I+ + +
Sbjct: 481 CTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVREASHKQIMENAEINNIIK 538
Query: 835 XXXXXXE---QDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYI 891
+ +D +L+ LRY +I+IMTD D DG+HI+ LL+ F + P L+++G++
Sbjct: 539 IVGLQYKKSYEDPESLKSLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEE 598
Query: 892 AQPPLYKIKYGNNE 905
P+ K E
Sbjct: 599 FITPIVKASKNKQE 612
Score = 70 (29.7 bits), Expect = 7.5e-11, Sum P(4) = 7.5e-11
Identities = 17/74 (22%), Positives = 36/74 (48%)
Query: 629 LCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIK 688
+ F N+I GG H+ + + + + K IE + K+ + + ++ + ++
Sbjct: 337 ISFVNSIATTKGGRHVDYV---VDQVVGKLIEVVKKKNKAGVSVKPFQVKNHIWVFVNCL 393
Query: 689 IPDPKFNSQTKNKL 702
I +P F+SQTK +
Sbjct: 394 IENPSFDSQTKENM 407
Score = 47 (21.6 bits), Expect = 7.5e-11, Sum P(4) = 7.5e-11
Identities = 14/65 (21%), Positives = 29/65 (44%)
Query: 439 IVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQN 498
++ +L ++ + K++GG +G G N S + T+ K + F+ N
Sbjct: 166 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST--KFTVETACKEYKHSFKQ-TWMN 222
Query: 499 RIIKT 503
++KT
Sbjct: 223 NMMKT 227
Score = 39 (18.8 bits), Expect = 7.5e-11, Sum P(4) = 7.5e-11
Identities = 13/47 (27%), Positives = 18/47 (38%)
Query: 332 KNKNSYDIQDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGL 378
+ S + DT + Q LE + RP+ YIG T L
Sbjct: 40 EESESVNKNDTSKKMSVERVYQKKTQLEHILLRPDTYIGSVEPLTQL 86
>UNIPROTKB|O42131 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2-beta" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0003682 "chromatin binding" evidence=IBA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISS;IBA] [GO:0005080 "protein kinase C binding"
evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change"
evidence=ISS;IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] [GO:0042826 "histone deacetylase binding"
evidence=IBA] [GO:0071778 "WINAC complex" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005080 GO:GO:0005654 GO:GO:0003682
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0042826
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0071778 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 HOVERGEN:HBG052998 EMBL:AB007446
IPI:IPI00819818 RefSeq:NP_990413.1 UniGene:Gga.30963
ProteinModelPortal:O42131 SMR:O42131 STRING:O42131 PRIDE:O42131
GeneID:395966 KEGG:gga:395966 CTD:7155 NextBio:20816031
Uniprot:O42131
Length = 1627
Score = 187 (70.9 bits), Expect = 7.5e-11, Sum P(4) = 7.5e-11
Identities = 46/134 (34%), Positives = 71/134 (52%)
Query: 780 CELYIVEGDSA-----GGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXX 834
C L + EGDSA G GRDR V PLRGK+LN+ +A ++I+ + +
Sbjct: 481 CTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVREASHKQIMENAEINNIIK 538
Query: 835 XXXXXXE---QDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYI 891
+ +D +L+ LRY +I+IMTD D DG+HI+ LL+ F + P L+++G++
Sbjct: 539 IVGLQYKKSYEDPESLKSLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEE 598
Query: 892 AQPPLYKIKYGNNE 905
P+ K E
Sbjct: 599 FITPIVKASKNKQE 612
Score = 70 (29.7 bits), Expect = 7.5e-11, Sum P(4) = 7.5e-11
Identities = 17/74 (22%), Positives = 36/74 (48%)
Query: 629 LCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIK 688
+ F N+I GG H+ + + + + K IE + K+ + + ++ + ++
Sbjct: 337 ISFVNSIATTKGGRHVDYV---VDQVVGKLIEVVKKKNKAGVSVKPFQVKNHIWVFVNCL 393
Query: 689 IPDPKFNSQTKNKL 702
I +P F+SQTK +
Sbjct: 394 IENPSFDSQTKENM 407
Score = 47 (21.6 bits), Expect = 7.5e-11, Sum P(4) = 7.5e-11
Identities = 14/65 (21%), Positives = 29/65 (44%)
Query: 439 IVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQN 498
++ +L ++ + K++GG +G G N S + T+ K + F+ N
Sbjct: 166 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST--KFTVETACKEYKHSFKQ-TWMN 222
Query: 499 RIIKT 503
++KT
Sbjct: 223 NMMKT 227
Score = 39 (18.8 bits), Expect = 7.5e-11, Sum P(4) = 7.5e-11
Identities = 13/47 (27%), Positives = 18/47 (38%)
Query: 332 KNKNSYDIQDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGL 378
+ S + DT + Q LE + RP+ YIG T L
Sbjct: 40 EESESVNKNDTSKKMSVERVYQKKTQLEHILLRPDTYIGSVEPLTQL 86
>UNIPROTKB|E9PTY5 [details] [associations]
symbol:Top2a "DNA topoisomerase 2" species:10116 "Rattus
norvegicus" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 IPI:IPI00193944 Ensembl:ENSRNOT00000044306
ArrayExpress:E9PTY5 Uniprot:E9PTY5
Length = 1526
Score = 198 (74.8 bits), Expect = 7.8e-11, Sum P(3) = 7.8e-11
Identities = 54/169 (31%), Positives = 82/169 (48%)
Query: 756 KKNLIDDIELSTKLADCQEKNPELCELYIVEGDSA-----GGSVKQGRDRRFQAVLPLRG 810
K N I I D +N C L + EGDSA G GRD+ V PLRG
Sbjct: 430 KHNRIKGIPKLDDANDAGSRNSAECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRG 487
Query: 811 KVLNIEKARFEKIILSEQXXXXXXXXXXXXE---QDEFNLEKLRYHRIIIMTDADIDGAH 867
K+LN+ +A ++I+ + + + +DE +L+ LRY +I+IMTD D DG+H
Sbjct: 488 KILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSH 547
Query: 868 IRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNEC--YLRDDIEE 914
I+ LL+ F + P L+ + ++ P+ K+ E Y + EE
Sbjct: 548 IKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEIAFYSLPEFEE 596
Score = 50 (22.7 bits), Expect = 7.8e-11, Sum P(3) = 7.8e-11
Identities = 31/122 (25%), Positives = 54/122 (44%)
Query: 890 YIAQPPL-YKIKYGNNE-CYLRDDIEEERYMLKIA-----FKNVKLISIENGDII--KEN 940
Y+ PL Y K +E C RD+ E+E LK +K +E +++ KE
Sbjct: 1125 YLLDMPLWYLTKEKKDELCKQRDEKEQELNTLKKKTPSDLWKEDLAAFVEELEVVEAKEK 1184
Query: 941 YFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSN 1000
+ + K ++ + QI ++ + S + VI + T E + KKI +K+ N
Sbjct: 1185 QD-EQVGLPGKGVKAKGKKAQISEV-LPSPVGKRVIPQV-TMEMRAEAEKKIRRKIKSEN 1241
Query: 1001 IE 1002
+E
Sbjct: 1242 VE 1243
Score = 48 (22.0 bits), Expect = 7.8e-11, Sum P(3) = 7.8e-11
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 439 IVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLS-RFLQLTINRNKK 485
++ +L ++ + K++GG +G G N S +F T +R K
Sbjct: 139 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYK 186
Score = 43 (20.2 bits), Expect = 4.0e-10, Sum P(3) = 4.0e-10
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 1082 YLRNEAENMVIKQRYKGLGEMN------PGQLWETTMNPMIRCLLKVKIKD 1126
YL E ++ + KQR + E+N P LW+ + + L V+ K+
Sbjct: 1133 YLTKEKKDELCKQRDEKEQELNTLKKKTPSDLWKEDLAAFVEELEVVEAKE 1183
Score = 38 (18.4 bits), Expect = 7.9e-10, Sum P(3) = 7.9e-10
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 328 IMLLKNKNSYDIQ-DTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTG 377
I+ L + +YDI T++ + ++ ++ R +MY+ D D TG
Sbjct: 234 IVALMVRRAYDIAGSTKDVKVFLNGNRL--PVKGFRSYVDMYLKDKVDETG 282
>UNIPROTKB|F1M7A0 [details] [associations]
symbol:Top2a "DNA topoisomerase 2" species:10116 "Rattus
norvegicus" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059 GO:GO:0005654
GO:GO:0005730 GO:GO:0005814 GO:GO:0008144 GO:GO:0045944
GO:GO:0003682 GO:GO:0040016 GO:GO:0006974 GO:GO:0043065
GO:GO:0030263 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0000793
GO:GO:0006266 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GO:GO:0045870 GeneTree:ENSGT00390000016222
IPI:IPI00562522 Ensembl:ENSRNOT00000050725 ArrayExpress:F1M7A0
Uniprot:F1M7A0
Length = 1528
Score = 198 (74.8 bits), Expect = 7.8e-11, Sum P(3) = 7.8e-11
Identities = 54/169 (31%), Positives = 82/169 (48%)
Query: 756 KKNLIDDIELSTKLADCQEKNPELCELYIVEGDSA-----GGSVKQGRDRRFQAVLPLRG 810
K N I I D +N C L + EGDSA G GRD+ V PLRG
Sbjct: 430 KHNRIKGIPKLDDANDAGSRNSAECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRG 487
Query: 811 KVLNIEKARFEKIILSEQXXXXXXXXXXXXE---QDEFNLEKLRYHRIIIMTDADIDGAH 867
K+LN+ +A ++I+ + + + +DE +L+ LRY +I+IMTD D DG+H
Sbjct: 488 KILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSH 547
Query: 868 IRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNEC--YLRDDIEE 914
I+ LL+ F + P L+ + ++ P+ K+ E Y + EE
Sbjct: 548 IKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEIAFYSLPEFEE 596
Score = 50 (22.7 bits), Expect = 7.8e-11, Sum P(3) = 7.8e-11
Identities = 31/122 (25%), Positives = 54/122 (44%)
Query: 890 YIAQPPL-YKIKYGNNE-CYLRDDIEEERYMLKIA-----FKNVKLISIENGDII--KEN 940
Y+ PL Y K +E C RD+ E+E LK +K +E +++ KE
Sbjct: 1125 YLLDMPLWYLTKEKKDELCKQRDEKEQELNTLKKKTPSDLWKEDLAAFVEELEVVEAKEK 1184
Query: 941 YFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSN 1000
+ + K ++ + QI ++ + S + VI + T E + KKI +K+ N
Sbjct: 1185 QD-EQVGLPGKGVKAKGKKAQISEV-LPSPVGKRVIPQV-TMEMRAEAEKKIRRKIKSEN 1241
Query: 1001 IE 1002
+E
Sbjct: 1242 VE 1243
Score = 48 (22.0 bits), Expect = 7.8e-11, Sum P(3) = 7.8e-11
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 439 IVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLS-RFLQLTINRNKK 485
++ +L ++ + K++GG +G G N S +F T +R K
Sbjct: 139 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYK 186
Score = 43 (20.2 bits), Expect = 4.0e-10, Sum P(3) = 4.0e-10
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 1082 YLRNEAENMVIKQRYKGLGEMN------PGQLWETTMNPMIRCLLKVKIKD 1126
YL E ++ + KQR + E+N P LW+ + + L V+ K+
Sbjct: 1133 YLTKEKKDELCKQRDEKEQELNTLKKKTPSDLWKEDLAAFVEELEVVEAKE 1183
Score = 38 (18.4 bits), Expect = 8.0e-10, Sum P(3) = 8.0e-10
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 328 IMLLKNKNSYDIQ-DTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTG 377
I+ L + +YDI T++ + ++ ++ R +MY+ D D TG
Sbjct: 234 IVALMVRRAYDIAGSTKDVKVFLNGNRL--PVKGFRSYVDMYLKDKVDETG 282
>MGI|MGI:98791 [details] [associations]
symbol:Top2b "topoisomerase (DNA) II beta" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0000819 "sister chromatid segregation" evidence=IBA]
[GO:0001764 "neuron migration" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=ISO;IBA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISO;IBA] [GO:0005080 "protein
kinase C binding" evidence=ISO;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005694 "chromosome" evidence=IDA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=ISO;IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0008022 "protein C-terminus binding" evidence=ISO] [GO:0016853
"isomerase activity" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0030900 "forebrain development" evidence=IMP]
[GO:0042826 "histone deacetylase binding" evidence=ISO;IBA]
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IBA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] [GO:0071778 "WINAC
complex" evidence=ISO;IBA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
MGI:MGI:98791 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005080 GO:GO:0005654 GO:GO:0005730
GO:GO:0030900 GO:GO:0003682 GO:GO:0006261 GO:GO:0007409
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0042826 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0071778 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 eggNOG:COG0187 Gene3D:3.40.50.670
PROSITE:PS50880 KO:K03164 HOGENOM:HOG000216693 HOVERGEN:HBG052998
GeneTree:ENSGT00390000016222 CTD:7155 OMA:AKEYFQD EMBL:D38046
EMBL:BC041106 EMBL:BC054541 IPI:IPI00135443 RefSeq:NP_033435.2
UniGene:Mm.130362 ProteinModelPortal:Q64511 SMR:Q64511
IntAct:Q64511 STRING:Q64511 PhosphoSite:Q64511 PaxDb:Q64511
PRIDE:Q64511 Ensembl:ENSMUST00000017629 GeneID:21974 KEGG:mmu:21974
UCSC:uc007shc.1 InParanoid:Q64511 OrthoDB:EOG4640B2
BindingDB:Q64511 ChEMBL:CHEMBL5564 NextBio:301674 Bgee:Q64511
CleanEx:MM_TOP2B Genevestigator:Q64511
GermOnline:ENSMUSG00000017485 Uniprot:Q64511
Length = 1612
Score = 186 (70.5 bits), Expect = 9.1e-11, Sum P(4) = 9.1e-11
Identities = 48/143 (33%), Positives = 74/143 (51%)
Query: 771 DCQEKNPELCELYIVEGDSA-----GGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIIL 825
D K+ C L + EGDSA G GRDR V PLRGK+LN+ +A ++I+
Sbjct: 455 DAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVREASHKQIME 512
Query: 826 SEQXXXXXXXXXXXXEQ---DEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPK 882
+ + ++ D +L+ LRY +I+IMTD D DG+HI+ LL+ F + P
Sbjct: 513 NAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPS 572
Query: 883 LIEYGYIYIAQPPLYKIKYGNNE 905
L+++G++ P+ K E
Sbjct: 573 LLKHGFLEEFITPIVKASKNKQE 595
Score = 71 (30.1 bits), Expect = 9.1e-11, Sum P(4) = 9.1e-11
Identities = 17/74 (22%), Positives = 37/74 (50%)
Query: 629 LCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIK 688
+ F N+I GG H+ + + + ++K IE + K+ + + ++ + ++
Sbjct: 320 ISFVNSIATTKGGRHVDYV---VDQVVSKLIEVVKKKNKAGVSVKPFQVKNHIWVFINCL 376
Query: 689 IPDPKFNSQTKNKL 702
I +P F+SQTK +
Sbjct: 377 IENPTFDSQTKENM 390
Score = 47 (21.6 bits), Expect = 9.1e-11, Sum P(4) = 9.1e-11
Identities = 14/65 (21%), Positives = 29/65 (44%)
Query: 439 IVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQN 498
++ +L ++ + K++GG +G G N S + T+ K + F+ N
Sbjct: 149 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST--KFTVETACKEYKHSFKQ-TWMN 205
Query: 499 RIIKT 503
++KT
Sbjct: 206 NMMKT 210
Score = 38 (18.4 bits), Expect = 9.1e-11, Sum P(4) = 9.1e-11
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 358 LEAVRKRPEMYIGDTSDGTGL 378
LE + RP+ YIG T L
Sbjct: 49 LEHILLRPDTYIGSVEPLTQL 69
>UNIPROTKB|Q64399 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2-beta" species:10030
"Cricetulus longicaudatus" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
GO:GO:0005730 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 PROSITE:PS50880 HOVERGEN:HBG052998 EMBL:X86455
ProteinModelPortal:Q64399 SMR:Q64399 PRIDE:Q64399 Uniprot:Q64399
Length = 1612
Score = 186 (70.5 bits), Expect = 9.1e-11, Sum P(4) = 9.1e-11
Identities = 48/143 (33%), Positives = 74/143 (51%)
Query: 771 DCQEKNPELCELYIVEGDSA-----GGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIIL 825
D K+ C L + EGDSA G GRDR V PLRGK+LN+ +A ++I+
Sbjct: 455 DAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVREASHKQIME 512
Query: 826 SEQXXXXXXXXXXXXEQ---DEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPK 882
+ + ++ D +L+ LRY +I+IMTD D DG+HI+ LL+ F + P
Sbjct: 513 NAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPS 572
Query: 883 LIEYGYIYIAQPPLYKIKYGNNE 905
L+++G++ P+ K E
Sbjct: 573 LLKHGFLEEFITPIVKASKNKQE 595
Score = 70 (29.7 bits), Expect = 9.1e-11, Sum P(4) = 9.1e-11
Identities = 17/74 (22%), Positives = 36/74 (48%)
Query: 629 LCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIK 688
+ F N+I GG H+ + + + + K IE + K+ + + ++ + ++
Sbjct: 320 ISFVNSIATTKGGRHVDYV---VDQVVGKLIEVVKKKNKAGVSVKPFQVKNHIWVFINCL 376
Query: 689 IPDPKFNSQTKNKL 702
I +P F+SQTK +
Sbjct: 377 IENPTFDSQTKENM 390
Score = 47 (21.6 bits), Expect = 9.1e-11, Sum P(4) = 9.1e-11
Identities = 14/65 (21%), Positives = 29/65 (44%)
Query: 439 IVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQN 498
++ +L ++ + K++GG +G G N S + T+ K + F+ N
Sbjct: 149 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST--KFTVETACKEYKHSFKQ-TWMN 205
Query: 499 RIIKT 503
++KT
Sbjct: 206 NMMKT 210
Score = 39 (18.8 bits), Expect = 9.1e-11, Sum P(4) = 9.1e-11
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 334 KNSYDIQDTQESSYSASSIQILEG---LEAVRKRPEMYIGDTSDGTGL 378
K + + +SS S ++ + LE + RP+ YIG T L
Sbjct: 22 KEELETSNKNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQL 69
>UNIPROTKB|F1PRA7 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9615 "Canis
lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0042826 "histone deacetylase binding" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005080 "protein kinase C binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0001764 "neuron migration" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524 GO:GO:0001764
GO:GO:0005654 GO:GO:0030900 GO:GO:0003682 GO:GO:0007409
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:AAEX03013556 Ensembl:ENSCAFT00000009221
Uniprot:F1PRA7
Length = 1602
Score = 186 (70.5 bits), Expect = 1.1e-10, Sum P(4) = 1.1e-10
Identities = 48/143 (33%), Positives = 74/143 (51%)
Query: 771 DCQEKNPELCELYIVEGDSA-----GGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIIL 825
D K+ C L + EGDSA G GRDR V PLRGK+LN+ +A ++I+
Sbjct: 444 DAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVREASHKQIME 501
Query: 826 SEQXXXXXXXXXXXXEQ---DEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPK 882
+ + ++ D +L+ LRY +I+IMTD D DG+HI+ LL+ F + P
Sbjct: 502 NAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPS 561
Query: 883 LIEYGYIYIAQPPLYKIKYGNNE 905
L+++G++ P+ K E
Sbjct: 562 LLKHGFLEEFITPIVKASKNKQE 584
Score = 70 (29.7 bits), Expect = 1.1e-10, Sum P(4) = 1.1e-10
Identities = 17/74 (22%), Positives = 36/74 (48%)
Query: 629 LCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIK 688
+ F N+I GG H+ + + + + K IE + K+ + + ++ + ++
Sbjct: 309 ISFVNSIATTKGGRHVDYV---VDQVVGKLIEVVKKKNKAGVSVKPFQVKNHIWVFINCL 365
Query: 689 IPDPKFNSQTKNKL 702
I +P F+SQTK +
Sbjct: 366 IENPTFDSQTKENM 379
Score = 47 (21.6 bits), Expect = 1.1e-10, Sum P(4) = 1.1e-10
Identities = 14/65 (21%), Positives = 29/65 (44%)
Query: 439 IVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQN 498
++ +L ++ + K++GG +G G N S + T+ K + F+ N
Sbjct: 138 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST--KFTVETACKEYKHSFKQ-TWMN 194
Query: 499 RIIKT 503
++KT
Sbjct: 195 NMMKT 199
Score = 38 (18.4 bits), Expect = 1.1e-10, Sum P(4) = 1.1e-10
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 358 LEAVRKRPEMYIGDTSDGTGL 378
LE + RP+ YIG T L
Sbjct: 38 LEHILLRPDTYIGSVEPLTQL 58
>UNIPROTKB|F1RS45 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0042826
"histone deacetylase binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005080 "protein kinase C binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001764 "neuron migration"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005654 GO:GO:0030900 GO:GO:0003682
GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:CU582923 Ensembl:ENSSSCT00000012279
ArrayExpress:F1RS45 Uniprot:F1RS45
Length = 1615
Score = 186 (70.5 bits), Expect = 1.2e-10, Sum P(4) = 1.2e-10
Identities = 48/143 (33%), Positives = 74/143 (51%)
Query: 771 DCQEKNPELCELYIVEGDSA-----GGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIIL 825
D K+ C L + EGDSA G GRDR V PLRGK+LN+ +A ++I+
Sbjct: 459 DAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVREASHKQIME 516
Query: 826 SEQXXXXXXXXXXXXEQ---DEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPK 882
+ + ++ D +L+ LRY +I+IMTD D DG+HI+ LL+ F + P
Sbjct: 517 NAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPS 576
Query: 883 LIEYGYIYIAQPPLYKIKYGNNE 905
L+++G++ P+ K E
Sbjct: 577 LLKHGFLEEFITPIVKASKNKQE 599
Score = 70 (29.7 bits), Expect = 1.2e-10, Sum P(4) = 1.2e-10
Identities = 17/74 (22%), Positives = 36/74 (48%)
Query: 629 LCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIK 688
+ F N+I GG H+ + + + + K IE + K+ + + ++ + ++
Sbjct: 324 ISFVNSIATTKGGRHVDYV---VDQVVGKLIEVVKKKNKAGVSVKPFQVKNHIWVFINCL 380
Query: 689 IPDPKFNSQTKNKL 702
I +P F+SQTK +
Sbjct: 381 IENPTFDSQTKENM 394
Score = 47 (21.6 bits), Expect = 1.2e-10, Sum P(4) = 1.2e-10
Identities = 14/65 (21%), Positives = 29/65 (44%)
Query: 439 IVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQN 498
++ +L ++ + K++GG +G G N S + T+ K + F+ N
Sbjct: 153 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST--KFTVETACKEYKHSFKQ-TWMN 209
Query: 499 RIIKT 503
++KT
Sbjct: 210 NMMKT 214
Score = 38 (18.4 bits), Expect = 1.2e-10, Sum P(4) = 1.2e-10
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 358 LEAVRKRPEMYIGDTSDGTGL 378
LE + RP+ YIG T L
Sbjct: 53 LEHILLRPDTYIGSVEPLTQL 73
>UNIPROTKB|F1MU48 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9913 "Bos
taurus" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0042826
"histone deacetylase binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005080 "protein kinase C binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001764 "neuron migration"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005654 GO:GO:0030900 GO:GO:0003682
GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:DAAA02061099 EMBL:DAAA02061100 EMBL:DAAA02061101
EMBL:DAAA02061102 IPI:IPI01003475 Ensembl:ENSBTAT00000006030
Uniprot:F1MU48
Length = 1599
Score = 186 (70.5 bits), Expect = 2.7e-10, Sum P(4) = 2.7e-10
Identities = 48/143 (33%), Positives = 74/143 (51%)
Query: 771 DCQEKNPELCELYIVEGDSA-----GGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIIL 825
D K+ C L + EGDSA G GRDR V PLRGK+LN+ +A ++I+
Sbjct: 446 DAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVREASHKQIME 503
Query: 826 SEQXXXXXXXXXXXXEQ---DEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPK 882
+ + ++ D +L+ LRY +I+IMTD D DG+HI+ LL+ F + P
Sbjct: 504 NAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPS 563
Query: 883 LIEYGYIYIAQPPLYKIKYGNNE 905
L+++G++ P+ K E
Sbjct: 564 LLKHGFLEEFITPIVKASKNKQE 586
Score = 70 (29.7 bits), Expect = 2.7e-10, Sum P(4) = 2.7e-10
Identities = 17/74 (22%), Positives = 36/74 (48%)
Query: 629 LCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIK 688
+ F N+I GG H+ + + + + K IE + K+ + + ++ + ++
Sbjct: 311 ISFVNSIATTKGGRHVDYV---VDQVVGKLIEVVKKKNKAGVSVKPFQVKNHIWVFINCL 367
Query: 689 IPDPKFNSQTKNKL 702
I +P F+SQTK +
Sbjct: 368 IENPTFDSQTKENM 381
Score = 42 (19.8 bits), Expect = 2.7e-10, Sum P(4) = 2.7e-10
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 334 KNSYDIQDTQESSYSASSIQILEG---LEAVRKRPEMYIGDTSDGTGL 378
K +I + +SS S ++ + LE + RP+ YIG T L
Sbjct: 11 KEESEIANKNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQL 58
Score = 39 (18.8 bits), Expect = 2.7e-10, Sum P(4) = 2.7e-10
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 456 KISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKT 503
K++GG +G G N S + T+ K + F+ N ++KT
Sbjct: 157 KVTGGRNGYGAKLCNIFST--KFTVETACKEYKHSFKQ-TWMNNMMKT 201
>UNIPROTKB|Q0DYE1 [details] [associations]
symbol:Os02g0699700 "DNA topoisomerase 2" species:39947
"Oryza sativa Japonica Group" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
EMBL:AP008208 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:3.40.50.670 KO:K03164
RefSeq:NP_001047833.1 UniGene:Os.34202 ProteinModelPortal:Q0DYE1
STRING:Q0DYE1 PRIDE:Q0DYE1 GeneID:4330426 KEGG:osa:4330426
Gramene:Q0DYE1 Uniprot:Q0DYE1
Length = 956
Score = 193 (73.0 bits), Expect = 9.6e-10, Sum P(3) = 9.6e-10
Identities = 63/258 (24%), Positives = 113/258 (43%)
Query: 631 FTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIP 690
F N I + GGTH+ + + I + + + K + ++ +++ L ++ I
Sbjct: 314 FVNRIATIKGGTHVDYVTNQIATHVMNIVNKRN--KNAHMK--AHNVKSHLWVFVNALID 369
Query: 691 DPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXXXX 750
+P F+SQTK L + + + + DFL++ G S ++
Sbjct: 370 NPAFDSQTKETLTTRQASFGSK---CELSDDFLKK-VGSSAIVLNLLSWAEFKLSKELQK 425
Query: 751 XXLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRD---RRFQAVLP 807
+++ L +L K+ C L + EGDSA G R + V P
Sbjct: 426 TDGSKRSRLTGIPKLEDANG-AGGKDSNNCTLILTEGDSAKALAMAGISVVGRDYYGVFP 484
Query: 808 LRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADIDGAH 867
LRGK+LN+ +A ++I+ + + + + + LRY ++IMTD D DG+H
Sbjct: 485 LRGKLLNVREASHKQIMENAEIQNIKQILGLQHGKQYDSTKGLRYGHLMIMTDQDHDGSH 544
Query: 868 IRALLLTFFYRKMPKLIE 885
I+ LL+ F + P LI+
Sbjct: 545 IKGLLINFIHSFWPSLIK 562
Score = 46 (21.3 bits), Expect = 9.6e-10, Sum P(3) = 9.6e-10
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 438 EIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLS-RFLQLTINRNKKIHYME 490
E++ L ++ N K +GG +G G N S F+ T + ++ Y +
Sbjct: 136 EMIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFVIETADGRRQKKYKQ 189
Score = 39 (18.8 bits), Expect = 9.6e-10, Sum P(3) = 9.6e-10
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 358 LEAVRKRPEMYIGDTSDGTGLHHFVFE 384
LE + RP+ YIG T +V+E
Sbjct: 38 LEHILLRPDTYIGSVEKHTA-QLWVYE 63
>ZFIN|ZDB-GENE-030131-2453 [details] [associations]
symbol:top2a "topoisomerase (DNA) II alpha"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006259 "DNA metabolic
process" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS;IBA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0007059 "chromosome segregation" evidence=ISS;IMP] [GO:0009330
"DNA topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0030261 "chromosome condensation" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=IBA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0009295 "nucleoid" evidence=IBA] [GO:0031100 "organ
regeneration" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0003916 "DNA topoisomerase activity" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 ZFIN:ZDB-GENE-030131-2453
GO:GO:0005524 GO:GO:0031100 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 CTD:7153 HOVERGEN:HBG052998
EMBL:AY648832 IPI:IPI00488403 RefSeq:NP_001003834.1
UniGene:Dr.119089 UniGene:Dr.31760 ProteinModelPortal:Q6DRC7
SMR:Q6DRC7 STRING:Q6DRC7 GeneID:323733 KEGG:dre:323733
NextBio:20808410 Uniprot:Q6DRC7
Length = 1574
Score = 184 (69.8 bits), Expect = 1.4e-09, Sum P(5) = 1.4e-09
Identities = 46/136 (33%), Positives = 71/136 (52%)
Query: 771 DCQEKNPELCELYIVEGDSA-----GGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIIL 825
D KN C L + EGDSA G GRDR V PLRGK+LN+ +A ++I+
Sbjct: 445 DAGGKNSNSCTLILTEGDSAKTLAVSGLGVVGRDR--YGVFPLRGKMLNVREASHKQIME 502
Query: 826 SEQXXXXXXXXXXXXEQ---DEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPK 882
+ + ++ D +L+ LRY +++IMTD D DG+HI+ LL+ F + P
Sbjct: 503 NAEINNIIKILGLQYKKNYSDPESLKSLRYGKLMIMTDQDQDGSHIKGLLINFIHHNWPS 562
Query: 883 LIEYGYIYIAQPPLYK 898
L+ + ++ P+ K
Sbjct: 563 LLRHNFLEEFITPIIK 578
Score = 61 (26.5 bits), Expect = 1.4e-09, Sum P(5) = 1.4e-09
Identities = 18/72 (25%), Positives = 35/72 (48%)
Query: 631 FTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIP 690
F N+I + GG H + I ++K IE + K+ + + ++ + ++ I
Sbjct: 312 FVNSIDKNKGGRHTDYVADQI---VSKLIEVVKKKNKAGVAVKPFQVKNHMWLFVNCLIE 368
Query: 691 DPKFNSQTKNKL 702
+P F+SQTK +
Sbjct: 369 NPSFDSQTKENM 380
Score = 46 (21.3 bits), Expect = 1.4e-09, Sum P(5) = 1.4e-09
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 439 IVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLS-RFLQLTINRNKK 485
++ +L ++ + K++GG +G G N S +F T R K
Sbjct: 139 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSLKFTVETACRESK 186
Score = 44 (20.5 bits), Expect = 1.4e-09, Sum P(5) = 1.4e-09
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 1082 YLRNEAENMVIKQRYKGLGEMN------PGQLWETTMNPMIRCLLKVKIKD 1126
YL E ++ + KQR + E+N P LW+ + L +V+ K+
Sbjct: 1131 YLTKEKKDELCKQRDAKMTELNTLKMKAPADLWKEDLAAFTEELERVEQKE 1181
Score = 40 (19.1 bits), Expect = 3.6e-07, Sum P(4) = 3.6e-07
Identities = 25/114 (21%), Positives = 55/114 (48%)
Query: 452 KNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSP 511
+ +Y I+G G+ + +NG +L IN + Y++ Y +++++ +T G SP
Sbjct: 240 RRAYDIAGSTKGVRV-LLNGK----RLPINNFRT--YVDL-Y--VKDKVDET--G---SP 284
Query: 512 IKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILK-KRIRELSFLNNGVCITLID 564
+ ++ + + ++ + EK F + F I K K R ++ + + LI+
Sbjct: 285 LTVVHEMVNERWEVCLTLSEKGFQQVSFVNSIDKNKGGRHTDYVADQIVSKLIE 338
Score = 37 (18.1 bits), Expect = 1.4e-09, Sum P(5) = 1.4e-09
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 358 LEAVRKRPEMYIGDTSDGT 376
LE + RP+ YIG T
Sbjct: 39 LEHILLRPDTYIGSVEPVT 57
>UNIPROTKB|E1BZ19 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005080 "protein kinase C binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0042826 "histone deacetylase
binding" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005829 GO:GO:0005524 GO:GO:0005654 GO:GO:0003682
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:AADN02001127 IPI:IPI00599764
ProteinModelPortal:E1BZ19 Ensembl:ENSGALT00000018432
ArrayExpress:E1BZ19 Uniprot:E1BZ19
Length = 1629
Score = 187 (70.9 bits), Expect = 3.6e-09, Sum P(4) = 3.6e-09
Identities = 46/134 (34%), Positives = 71/134 (52%)
Query: 780 CELYIVEGDSA-----GGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXX 834
C L + EGDSA G GRDR V PLRGK+LN+ +A ++I+ + +
Sbjct: 483 CTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVREASHKQIMENAEINNIIK 540
Query: 835 XXXXXXE---QDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYI 891
+ +D +L+ LRY +I+IMTD D DG+HI+ LL+ F + P L+++G++
Sbjct: 541 IVGLQYKKSYEDPESLKSLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEE 600
Query: 892 AQPPLYKIKYGNNE 905
P+ K E
Sbjct: 601 FITPIVKASKNKQE 614
Score = 55 (24.4 bits), Expect = 3.6e-09, Sum P(4) = 3.6e-09
Identities = 19/78 (24%), Positives = 37/78 (47%)
Query: 629 LCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREG----LTCV 684
+ F N+I GG H+ + + + + K IE + KK+K + + + +
Sbjct: 337 ISFVNSIATTKGGRHVDYV---VDQVVGKLIEVVK--KKNKAGVSVKPFQASNFNHIWVF 391
Query: 685 LSIKIPDPKFNSQTKNKL 702
++ I +P F+SQTK +
Sbjct: 392 VNCLIENPSFDSQTKENM 409
Score = 45 (20.9 bits), Expect = 3.6e-09, Sum P(4) = 3.6e-09
Identities = 15/65 (23%), Positives = 28/65 (43%)
Query: 439 IVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQN 498
++ +L ++ + KI GG +G G N S + T+ K + F+ N
Sbjct: 166 LIFGQLLTSSNYDDDEKKIVGGRNGYGAKLCNIFST--KFTVETACKEYKHSFKQ-TWMN 222
Query: 499 RIIKT 503
++KT
Sbjct: 223 NMMKT 227
Score = 39 (18.8 bits), Expect = 3.6e-09, Sum P(4) = 3.6e-09
Identities = 13/47 (27%), Positives = 18/47 (38%)
Query: 332 KNKNSYDIQDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGL 378
+ S + DT + Q LE + RP+ YIG T L
Sbjct: 40 EESESVNKNDTSKKMSVERVYQKKTQLEHILLRPDTYIGSVEPLTQL 86
>UNIPROTKB|F1NZF0 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 IPI:IPI00822514 GeneTree:ENSGT00390000016222
EMBL:AADN02068749 Ensembl:ENSGALT00000040062 Uniprot:F1NZF0
Length = 1553
Score = 197 (74.4 bits), Expect = 5.4e-09, Sum P(3) = 5.4e-09
Identities = 76/299 (25%), Positives = 128/299 (42%)
Query: 631 FTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIP 690
F N+I GG H+ + I + K I+ + K+ + + ++ + ++ I
Sbjct: 314 FVNSIATTKGGRHVDYVADQI---VTKLIDVVKKKNKNGVGVKPFQVKNHMWIFVNSLIE 370
Query: 691 DPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXXXX 750
+P F+SQTK + K K F++ G C
Sbjct: 371 NPTFDSQTKENMTLQA--KSFGSTC-KLSEKFIKGAVG-----CGIVESILNWVKFKAQT 422
Query: 751 XXLTRKKNLIDDIELS--TKLADCQE---KNPELCELYIVEGDSA-----GGSVKQGRDR 800
L +K + + ++ KL D + KN C L + EGDSA G GRD+
Sbjct: 423 Q-LNKKCSAVKHTKIKGVPKLDDANDAGNKNSIDCTLILTEGDSAKTLAVSGLGVVGRDK 481
Query: 801 RFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXE---QDEFNLEKLRYHRIII 857
V PLRGK+LN+ +A ++I+ + + + +D +L+ LRY +I+I
Sbjct: 482 --YGVFPLRGKMLNVREASHKQIMENAEINNIIKIVGLQYKKNYEDRESLKSLRYGKIMI 539
Query: 858 MTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNEC--YLRDDIEE 914
MTD D DG+HI+ LL+ F + P L+ + ++ P+ K+ E Y + EE
Sbjct: 540 MTDQDQDGSHIKGLLINFIHHNWPSLLRHNFLEEFITPIIKVSKNKEEIPFYSIPEFEE 598
Score = 44 (20.5 bits), Expect = 5.4e-09, Sum P(3) = 5.4e-09
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 439 IVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLS-RFLQLTINRNKK 485
++ +L ++ + K++GG +G G N S +F T R K
Sbjct: 141 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACREYK 188
Score = 37 (18.1 bits), Expect = 5.4e-09, Sum P(3) = 5.4e-09
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 358 LEAVRKRPEMYIGDTSDGT 376
LE + RP+ YIG T
Sbjct: 41 LEHILLRPDTYIGSVETVT 59
>UNIPROTKB|O42130 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000819
"sister chromatid segregation" evidence=IBA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS;IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=ISS;IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=ISS;IBA] [GO:0009295 "nucleoid" evidence=IBA]
[GO:0000287 "magnesium ion binding" evidence=ISS] [GO:0008301 "DNA
binding, bending" evidence=ISS] [GO:0006974 "response to DNA damage
stimulus" evidence=ISS] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISS] [GO:0006266 "DNA ligation"
evidence=ISS] [GO:0030263 "apoptotic chromosome condensation"
evidence=ISS] [GO:0008144 "drug binding" evidence=ISS] [GO:0003677
"DNA binding" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005654 GO:GO:0000287 GO:GO:0008144
GO:GO:0006974 GO:GO:0006261 GO:GO:0008301 GO:GO:0043065
GO:GO:0030263 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0006266
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0009330 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
EMBL:AB007445 IPI:IPI00822514 RefSeq:NP_990122.1 UniGene:Gga.2010
ProteinModelPortal:O42130 SMR:O42130 STRING:O42130 GeneID:395570
KEGG:gga:395570 CTD:7153 HOGENOM:HOG000216693 HOVERGEN:HBG052998
NextBio:20815644 Uniprot:O42130
Length = 1553
Score = 197 (74.4 bits), Expect = 5.4e-09, Sum P(3) = 5.4e-09
Identities = 76/299 (25%), Positives = 128/299 (42%)
Query: 631 FTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIP 690
F N+I GG H+ + I + K I+ + K+ + + ++ + ++ I
Sbjct: 314 FVNSIATTKGGRHVDYVADQI---VTKLIDVVKKKNKNGVGVKPFQVKNHMWIFVNSLIE 370
Query: 691 DPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXXXX 750
+P F+SQTK + K K F++ G C
Sbjct: 371 NPTFDSQTKENMTLQA--KSFGSTC-KLSEKFIKGAVG-----CGIVESILNWVKFKAQT 422
Query: 751 XXLTRKKNLIDDIELS--TKLADCQE---KNPELCELYIVEGDSA-----GGSVKQGRDR 800
L +K + + ++ KL D + KN C L + EGDSA G GRD+
Sbjct: 423 Q-LNKKCSAVKHTKIKGVPKLDDANDAGSKNSIDCTLILTEGDSAKTLAVSGLGVVGRDK 481
Query: 801 RFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXE---QDEFNLEKLRYHRIII 857
V PLRGK+LN+ +A ++I+ + + + +D +L+ LRY +I+I
Sbjct: 482 --YGVFPLRGKMLNVREASHKQIMENAEINNIIKIVGLQYKKNYEDRESLKSLRYGKIMI 539
Query: 858 MTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNEC--YLRDDIEE 914
MTD D DG+HI+ LL+ F + P L+ + ++ P+ K+ E Y + EE
Sbjct: 540 MTDQDQDGSHIKGLLINFIHHNWPSLLRHNFLEEFITPIIKVSKNKEEIPFYSIPEFEE 598
Score = 44 (20.5 bits), Expect = 5.4e-09, Sum P(3) = 5.4e-09
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 439 IVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLS-RFLQLTINRNKK 485
++ +L ++ + K++GG +G G N S +F T R K
Sbjct: 141 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACREYK 188
Score = 37 (18.1 bits), Expect = 5.4e-09, Sum P(3) = 5.4e-09
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 358 LEAVRKRPEMYIGDTSDGT 376
LE + RP+ YIG T
Sbjct: 41 LEHILLRPDTYIGSVETVT 59
>UNIPROTKB|F1P2F2 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0040016 "embryonic cleavage" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0042826 "histone
deacetylase binding" evidence=IEA] [GO:0043065 "positive regulation
of apoptotic process" evidence=IEA] [GO:0043130 "ubiquitin binding"
evidence=IEA] [GO:0045870 "positive regulation of retroviral genome
replication" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0005080 "protein kinase C binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005814 "centriole" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0006266 "DNA
ligation" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008144 "drug binding" evidence=IEA] [GO:0009330
"DNA topoisomerase complex (ATP-hydrolyzing)" evidence=IEA]
[GO:0030263 "apoptotic chromosome condensation" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0007059 GO:GO:0005654 GO:GO:0005730
GO:GO:0005814 GO:GO:0008144 GO:GO:0045944 GO:GO:0003682
GO:GO:0006974 GO:GO:0043065 GO:GO:0030263 Gene3D:3.30.565.10
SUPFAM:SSF55874 GO:GO:0000793 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GO:GO:0045870
GeneTree:ENSGT00390000016222 EMBL:AADN02068749 IPI:IPI00571557
Ensembl:ENSGALT00000006249 Uniprot:F1P2F2
Length = 1586
Score = 189 (71.6 bits), Expect = 2.4e-08, Sum P(4) = 2.4e-08
Identities = 50/154 (32%), Positives = 77/154 (50%)
Query: 771 DCQEKNPELCELYIVEGDSA-----GGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIIL 825
D KN C L + EGDSA G GRD+ V PLRGK+LN+ +A ++I+
Sbjct: 468 DAGNKNSIDCTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKMLNVREASHKQIME 525
Query: 826 SEQXXXXXXXXXXXXE---QDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPK 882
+ + + +D +L+ LRY +I+IMTD D DG+HI+ LL+ F + P
Sbjct: 526 NAEINNIIKIVGLQYKKNYEDRESLKSLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPS 585
Query: 883 LIEYGYIYIAQPPLYKIKYGNNEC--YLRDDIEE 914
L+ + ++ P+ K+ E Y + EE
Sbjct: 586 LLRHNFLEEFITPIIKVSKNKEEIPFYSIPEFEE 619
Score = 47 (21.6 bits), Expect = 2.4e-08, Sum P(4) = 2.4e-08
Identities = 20/94 (21%), Positives = 45/94 (47%)
Query: 617 SMQWNNSYNENILCFTNNIL------QV--DGGTHLTGLRSGITRAINKYIEENEFLKKS 668
S+ S++ +ILC+ + +L ++ GG H+ + I + K I+ + K+
Sbjct: 313 SIATTKSHSLHILCYWHCVLFHWKHLKLFGPGGRHVDYVADQI---VTKLIDVVKKKNKN 369
Query: 669 KIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKL 702
+ + ++ + ++ I +P F+SQTK +
Sbjct: 370 GVGVKPFQVKNHMWIFVNSLIENPTFDSQTKENM 403
Score = 44 (20.5 bits), Expect = 2.4e-08, Sum P(4) = 2.4e-08
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 439 IVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLS-RFLQLTINRNKK 485
++ +L ++ + K++GG +G G N S +F T R K
Sbjct: 137 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACREYK 184
Score = 37 (18.1 bits), Expect = 2.4e-08, Sum P(4) = 2.4e-08
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 358 LEAVRKRPEMYIGDTSDGT 376
LE + RP+ YIG T
Sbjct: 37 LEHILLRPDTYIGSVETVT 55
>UNIPROTKB|A8JD08 [details] [associations]
symbol:TOP2 "DNA topoisomerase 2" species:3055
"Chlamydomonas reinhardtii" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 KO:K03164 EMBL:DS496159
RefSeq:XP_001700298.1 ProteinModelPortal:A8JD08 STRING:A8JD08
EnsemblPlants:EDO98265 GeneID:5725848 KEGG:cre:CHLREDRAFT_38019
ProtClustDB:PLN03128 BioCyc:CHLAMY:CHLREDRAFT_38019-MONOMER
Uniprot:A8JD08
Length = 1167
Score = 179 (68.1 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 76/285 (26%), Positives = 118/285 (41%)
Query: 631 FTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGED-IREGLTCVLSIKI 689
F N+I GGTH+ I + K+ E K +K I ++ L L+ +
Sbjct: 313 FVNSISTQKGGTHV----DYIVNQVVKHATEKLSKKTTKTAAIKPAMVKNHLWVFLNCYV 368
Query: 690 PDPKFNSQTKNKLVSSEVRKPVE-EIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXX 748
+P F+SQTK L + E+ + L L+ +S +I
Sbjct: 369 ENPAFDSQTKETLTLRATAFGSKCELPVPLLDKVLKAGLSDS-IIRFAEFKSQKELKKGD 427
Query: 749 XXXXLTRKKNLIDDIELSTKLADCQEKN-PEL--CELYIVEGDSA-----GGSVKQGRDR 800
K++ + I TKL D + P C L + EGDSA G GRD
Sbjct: 428 GT-----KRSRLHGI---TKLDDANDAGGPRSRECTLILTEGDSAKALAISGLGVVGRDH 479
Query: 801 RFQAVLPLRGKVLNIEKARFEKIILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTD 860
V PLRGK+LN+ +A +I + + + N LRY ++IMTD
Sbjct: 480 --YGVFPLRGKLLNVREASAAQIAANAEIQNIKQIMGLQHGKVYENTTSLRYGHLMIMTD 537
Query: 861 ADIDGAHIRALLLTFFYRKMPKLIEY-GYIYIAQPPLYKIKYGNN 904
D DG+HI+ L++ F + P L+ G++ P+ K + G +
Sbjct: 538 QDHDGSHIKGLIMNFLHSFFPSLLRIPGFLLEFITPIVKARRGRD 582
Score = 40 (19.1 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 358 LEAVRKRPEMYIGDT 372
LE + RP+ YIG T
Sbjct: 29 LEHIILRPDTYIGST 43
>WB|WBGene00022854 [details] [associations]
symbol:cin-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0016246 "RNA interference" evidence=IMP]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00521 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00433 SMART:SM00434 GO:GO:0005524 GO:GO:0009792
GO:GO:0016246 GO:GO:0006261 GO:GO:0000910 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 EMBL:FO081697
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 GeneTree:ENSGT00390000016222
EMBL:EU191083 RefSeq:NP_495440.4 UniGene:Cel.20522
ProteinModelPortal:G5ECQ8 SMR:G5ECQ8 EnsemblMetazoa:ZK1127.7
GeneID:191525 KEGG:cel:CELE_ZK1127.7 CTD:191525 WormBase:ZK1127.7
OMA:SISIRTM NextBio:949466 Uniprot:G5ECQ8
Length = 842
Score = 147 (56.8 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 46/159 (28%), Positives = 69/159 (43%)
Query: 755 RKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSA-----GGSVKQGRDRRFQAVLPLR 809
RK + + I D KN + C L + EGDSA G GRD+ V P R
Sbjct: 32 RKTSKLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDK--YGVFPFR 89
Query: 810 GKVLNIEKARFEKIILSEQXXXXXXXXXXXXE---QDEFNLEKLRYHRIIIMTDADIDGA 866
K+LN+ +I S + + E + + LRY +++IM + D DG+
Sbjct: 90 RKLLNVCDLNVNQIADSAEVNAIIKILGLQYTKKYETEDDFKTLRYGKLLIMANHDSDGS 149
Query: 867 HIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNE 905
+ LLL FF+R P L + ++ P+ K G E
Sbjct: 150 QFKGLLLNFFHRFWPALFKRDFVEDFITPIAKATEGKEE 188
>UNIPROTKB|G5ECQ8 [details] [associations]
symbol:cin-4 "Chromosome instability 4" species:6239
"Caenorhabditis elegans" [GO:0009295 "nucleoid" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00521 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00433
SMART:SM00434 GO:GO:0005524 GO:GO:0009792 GO:GO:0016246
GO:GO:0006261 GO:GO:0000910 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 EMBL:FO081697 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 GeneTree:ENSGT00390000016222
EMBL:EU191083 RefSeq:NP_495440.4 UniGene:Cel.20522
ProteinModelPortal:G5ECQ8 SMR:G5ECQ8 EnsemblMetazoa:ZK1127.7
GeneID:191525 KEGG:cel:CELE_ZK1127.7 CTD:191525 WormBase:ZK1127.7
OMA:SISIRTM NextBio:949466 Uniprot:G5ECQ8
Length = 842
Score = 147 (56.8 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 46/159 (28%), Positives = 69/159 (43%)
Query: 755 RKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSA-----GGSVKQGRDRRFQAVLPLR 809
RK + + I D KN + C L + EGDSA G GRD+ V P R
Sbjct: 32 RKTSKLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDK--YGVFPFR 89
Query: 810 GKVLNIEKARFEKIILSEQXXXXXXXXXXXXE---QDEFNLEKLRYHRIIIMTDADIDGA 866
K+LN+ +I S + + E + + LRY +++IM + D DG+
Sbjct: 90 RKLLNVCDLNVNQIADSAEVNAIIKILGLQYTKKYETEDDFKTLRYGKLLIMANHDSDGS 149
Query: 867 HIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNE 905
+ LLL FF+R P L + ++ P+ K G E
Sbjct: 150 QFKGLLLNFFHRFWPALFKRDFVEDFITPIAKATEGKEE 188
>UNIPROTKB|Q50790 [details] [associations]
symbol:dnaN "DNA polymerase III subunit beta" species:1773
"Mycobacterium tuberculosis" [GO:0005576 "extracellular region"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA]
InterPro:IPR001001 InterPro:IPR022634 InterPro:IPR022635
InterPro:IPR022637 Pfam:PF00712 Pfam:PF02767 Pfam:PF02768
PIRSF:PIRSF000804 SMART:SM00480 GO:GO:0005737 GO:GO:0005618
GO:GO:0005576 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0006260 EMBL:BX842572
GO:GO:0008408 GO:GO:0003887 EMBL:X92504 GO:GO:0009360
eggNOG:COG0592 KO:K02338 OMA:DYNRVIP TIGRFAMs:TIGR00663 PIR:F70850
RefSeq:NP_214516.1 RefSeq:NP_334411.1 RefSeq:YP_006513314.1
PDB:3P16 PDB:3RB9 PDBsum:3P16 PDBsum:3RB9 ProteinModelPortal:Q50790
SMR:Q50790 PRIDE:Q50790 EnsemblBacteria:EBMYCT00000000149
EnsemblBacteria:EBMYCT00000071477 GeneID:13315975 GeneID:887092
GeneID:922430 KEGG:mtc:MT0002 KEGG:mtu:Rv0002 KEGG:mtv:RVBD_0002
PATRIC:18121728 TubercuList:Rv0002 HOGENOM:HOG000071793
ProtClustDB:PRK07761 EvolutionaryTrace:Q50790 Uniprot:Q50790
Length = 402
Score = 139 (54.0 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 47/296 (15%), Positives = 130/296 (43%)
Query: 29 LPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLPETE 88
+P+LS +L+ + ++ D EV + +++V+ R DI R+LP +
Sbjct: 39 VPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIVSPG-SVLVSGRLLSDITRALPN-K 96
Query: 89 KVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFS 148
V +++E + + G ++F+L T+ ++YP TL + + L + ++ V +
Sbjct: 97 PVDVHVEGNRVALTCGNARFSLPTMPVEDYP--TLPTLPEETGLLPAELFAEAISQVAIA 154
Query: 149 IAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSC-SDIIIPRKTVFTL 207
+ D L G+ + + ++ ++D RL ++ + +++P KT+
Sbjct: 155 AGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEA 214
Query: 208 QRL-LENKENPVELKIS-----NNQXXXXXXXXXXXXXXXDGKFLDYKYVISNKYEKSFL 261
+ + + + L + D +F ++ ++ ++
Sbjct: 215 AKAGIGGSDVRLSLGTGPGVGKDGLLGISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVAT 274
Query: 262 VNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASEELEINYNGK 317
++ +L+ +++ +++++ D+ VR+ ++++ + + +A E+L ++Y G+
Sbjct: 275 MDVAELIEAIKLVALVA-DRGAQVRMEFADGSVRLSAGADDVGRAEEDLVVDYAGE 329
>UNIPROTKB|Q23CP4 [details] [associations]
symbol:TTHERM_01335310 "DNA topoisomerase 2" species:312017
"Tetrahymena thermophila SB210" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR003594 InterPro:IPR013759
InterPro:IPR013760 PRINTS:PR00418 SMART:SM00433 GO:GO:0005524
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR014721 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 KO:K03164 EMBL:GG662714
RefSeq:XP_001014550.2 ProteinModelPortal:Q23CP4
EnsemblProtists:EAR94305 GeneID:7832067 KEGG:tet:TTHERM_01335310
ProtClustDB:CLSZ2498776 Uniprot:Q23CP4
Length = 784
Score = 123 (48.4 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 51/237 (21%), Positives = 111/237 (46%)
Query: 626 ENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEI---IGEDIREGLT 682
++I+ F N + Q +GGTH+ + I + ++ I+ + ++E+ +G+ R+ +
Sbjct: 184 KDIISFVNGLPQ-NGGTHVNFINQIIKQ--DQLIKNLNVQDQDELEVMKQLGKQYRQNVF 240
Query: 683 CVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXX 742
+ S+ + P + SQ+K++L ++ +K + I L ++Q+ +S L+
Sbjct: 241 IIFSLLVHQPSYTSQSKDQLKTN--KKDWFDTI--ELEKYIQQQIQQSSLL----QELKI 292
Query: 743 XXXXXXXXXXLTRKKNLIDDIELST--KLADC---QEKNPELCELYIVEGDSAGGSVKQG 797
+ ++K+ I + +++ KL D +++ E C L EGDSA ++ G
Sbjct: 293 EIQQQTKKQQVLKQKDQIKKMNINSVKKLQDAIKIRDRRTE-CSLLCAEGDSAMSFIRSG 351
Query: 798 ---RDRRFQAVLPLRGKVLNIEKARFEKI----ILSE-QXXXXXXXXXXXXEQDEFN 846
+ ++ PL+GK++N+ +I ILS+ Q +++FN
Sbjct: 352 LTEQQKQIYGRFPLKGKLMNVNSKTDRQIGENEILSQLQRSLNRYFTESLDSENDFN 408
Score = 67 (28.6 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 451 NKNSYKISGGLHGIGLSCVNGLSRFLQLTINRN----KKIHYM-EFRYGV-LQNRIIKTI 504
N N K++GG +G G N LS + ++ + K++HY ++ LQ II +
Sbjct: 131 NLNDPKLTGGKNGYGAKLTNVLSEYFEVETKYDNLIFKQLHYEGNTKHSQQLQKDIISFV 190
Query: 505 NGI 507
NG+
Sbjct: 191 NGL 193
>UNIPROTKB|Q23CY2 [details] [associations]
symbol:TTHERM_00052080 "DNA topoisomerase II (N-terminal
region) protein" species:312017 "Tetrahymena thermophila SB210"
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0000819 "sister chromatid segregation" evidence=IBA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change" evidence=IBA]
[GO:0006312 "mitotic recombination" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR003594
InterPro:IPR013759 InterPro:IPR013760 PRINTS:PR00418 SMART:SM00433
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR014721 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 Gene3D:3.40.50.670 KO:K03164
ProtClustDB:CLSZ2498776 EMBL:GG662712 RefSeq:XP_001014904.1
ProteinModelPortal:Q23CY2 EnsemblProtists:EAR94448 GeneID:7827097
KEGG:tet:TTHERM_00052080 Uniprot:Q23CY2
Length = 523
Score = 121 (47.7 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 50/236 (21%), Positives = 110/236 (46%)
Query: 627 NILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEI---IGEDIREGLTC 683
+I+ F N + Q +GGTH+ + I + ++ I+ + ++E+ +G+ R+ +
Sbjct: 186 DIISFVNGLPQ-NGGTHVNFINQIIKQ--DQLIKNLNVQDQDELEVMKQLGKQYRQNVFI 242
Query: 684 VLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXX 743
+ S+ + P + SQ+K++L ++ +K + + L ++Q+ +S L+
Sbjct: 243 IFSLLVHQPSYTSQSKDQLKTN--KKDWFDTV--ELEKYIQQQIQQSSLL----QELKIE 294
Query: 744 XXXXXXXXXLTRKKNLIDDIELST--KLADC---QEKNPELCELYIVEGDSAGGSVKQG- 797
+ ++K+ I + +++ KL D +++ E C L EGDSA ++ G
Sbjct: 295 IQQQTKKQQVLKQKDQIKKMNINSVKKLQDAIKIRDRRTE-CSLLCAEGDSAMSFIRSGL 353
Query: 798 --RDRRFQAVLPLRGKVLNIEKARFEKI----ILSE-QXXXXXXXXXXXXEQDEFN 846
+ ++ PL+GK++N+ +I ILS+ Q +++FN
Sbjct: 354 TEQQKQIYGRFPLKGKLMNVNSKTDRQIGENEILSQLQRSLNRYFTESLDSENDFN 409
Score = 59 (25.8 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 451 NKNSYKISGGLHGIGLSCVNGLSRFLQLTINRN----KKIHYM-EFRYGVLQ--NRIIKT 503
N N K++GG +G G N LS + ++ + K++HY ++ Q + II
Sbjct: 131 NLNDPKLTGGKNGYGAKLTNVLSEYFEVETKYDNLIFKQLHYEGNTKHSEPQITHDIISF 190
Query: 504 INGI 507
+NG+
Sbjct: 191 VNGL 194
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.138 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1161 1030 0.00081 123 3 11 22 0.39 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 115
No. of states in DFA: 614 (65 KB)
Total size of DFA: 418 KB (2201 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 82.64u 0.16s 82.80t Elapsed: 00:00:04
Total cpu time: 82.69u 0.16s 82.85t Elapsed: 00:00:04
Start: Thu Aug 15 13:18:57 2013 End: Thu Aug 15 13:19:01 2013
WARNINGS ISSUED: 1