RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13360
(1161 letters)
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId:
562]}
Length = 219
Score = 240 bits (613), Expect = 3e-73
Identities = 124/234 (52%), Positives = 168/234 (71%), Gaps = 17/234 (7%)
Query: 345 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVT 404
+S +SSI++L+GL+AVRKRP MYIGDT DGTGLHH VFE++DNAIDE+LAG+C +I VT
Sbjct: 2 NSSDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 61
Query: 405 IYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGI 464
I++DNS+S+ D+GRGIP I + SAAE++MT LHAGGKF+ NSYK+SGGLHG+
Sbjct: 62 IHADNSVSVQDDGRGIPTGI----HPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 117
Query: 465 GLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTK 524
G+S VN LS+ L+L I R KIH + +G+ +P+ + G+T K GT
Sbjct: 118 GVSVVNALSQKLELVIQREGKIHRQIYE------------HGVPQAPLAVTGETEKTGTM 165
Query: 525 IHFWVDEKIFSNI-EFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKG 577
+ FW + F+N+ EF YEIL KR+RELSFL++GV I L D+R K++ F ++G
Sbjct: 166 VRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDGKEDHFHYEG 219
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus
[TaxId: 274]}
Length = 212
Score = 204 bits (521), Expect = 7e-61
Identities = 89/227 (39%), Positives = 130/227 (57%), Gaps = 15/227 (6%)
Query: 351 SIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYSDNS 410
+I++L+GLE VR RP MYIG T G HH EILDNA+DE+LAGY T+I V + D S
Sbjct: 1 AIRVLKGLEGVRHRPAMYIGGT-GVEGYHHLFKEILDNAVDEALAGYATEILVRLNEDGS 59
Query: 411 ISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVN 470
+++ DNGRGIP+D + + A E++ LH+GGKF + +YK+SGGLHG+G S VN
Sbjct: 60 LTVEDNGRGIPVD----LMPEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVN 115
Query: 471 GLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVD 530
LS + + + R K H + F G + K GT++ F D
Sbjct: 116 ALSEWTVVEVFREGKHHRIAFSRG----------EVTEPLRVVGEAPRGKTGTRVTFKPD 165
Query: 531 EKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKG 577
+IF N+ F ++ R+RE+++L G+ + D + K+E+F KG
Sbjct: 166 PEIFGNLRFDPSKIRARLREVAYLVAGLKLVFQDRQHGKEEVFLDKG 212
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 202 bits (515), Expect = 1e-54
Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 14/179 (7%)
Query: 756 KKNLIDDIELSTKLADCQE---KNPELCELYIVEGDSA-----GGSVKQGRDRRFQAVLP 807
+K+ I + KL D + K C L + EGDSA G GRD + P
Sbjct: 1 RKSRITNY---PKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRD--YYGCYP 55
Query: 808 LRGKVLNIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAH 867
LRGK+LN+ +A ++I+ + +I + +G+ + + + LRY ++IMTD D DG+H
Sbjct: 56 LRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSH 115
Query: 868 IRALLLTFFYRKMPKLIEY-GYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKN 925
I+ L++ F L++ G++ P+ K+ Y ++
Sbjct: 116 IKGLIINFLESSFLGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEES 174
Score = 32.1 bits (72), Expect = 0.51
Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 1/91 (1%)
Query: 1060 IQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCL 1119
+ + K N + ++ YKGLG ++ E N L
Sbjct: 148 VSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRH-L 206
Query: 1120 LKVKIKDAISADKIFMTLMGDNVELRRKFIE 1150
D I + + R++++
Sbjct: 207 KIFHSLQGNDKDYIDLAFSKKKADDRKEWLR 237
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli
[TaxId: 562]}
Length = 168
Score = 170 bits (433), Expect = 2e-49
Identities = 52/206 (25%), Positives = 100/206 (48%), Gaps = 41/206 (19%)
Query: 373 SDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDIKIDDKHKP 432
+D T +H E++DN++DE+LAG+ +++V +++D S+ + D+GRG+P+DI +
Sbjct: 1 TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDI----HPEE 56
Query: 433 KRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFR 492
A E+++ S VN LS+ +++ + R+ +++ + F
Sbjct: 57 GVPAVELILCI-----------------------SVVNALSKRVEVNVRRDGQVYNIAFE 93
Query: 493 YGVLQNRIIKTINGISVSPIKIIGDTNKQ--GTKIHFWVDEKIFSNIEFHYEILKKRIRE 550
NG V ++++G K+ GT +HFW DE F + F L ++
Sbjct: 94 ------------NGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKA 141
Query: 551 LSFLNNGVCITLIDERIKKKEIFEFK 576
+ L GV IT DE ++ + ++
Sbjct: 142 KAVLCPGVEITFKDEINNTEQRWCYQ 167
>d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli [TaxId:
562]}
Length = 172
Score = 170 bits (432), Expect = 2e-49
Identities = 90/177 (50%), Positives = 130/177 (73%), Gaps = 5/177 (2%)
Query: 578 GTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQ 637
G FV Y+NK+K +HP IF S +K+ I ++V++QWN+ + ENI CFTNNI Q
Sbjct: 1 GIKAFVEYLNKNKTPIHPNIFY-----FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQ 55
Query: 638 VDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQ 697
DGGTHL G R+ +TR +N Y+++ + KK+K+ G+D REGL V+S+K+PDPKF+SQ
Sbjct: 56 RDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQ 115
Query: 698 TKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELT 754
TK+KLVSSEV+ VE+ + + L ++L ENP ++K++ KII+AAR+REAAR+ RE+T
Sbjct: 116 TKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMT 172
>d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus
[TaxId: 274]}
Length = 172
Score = 146 bits (369), Expect = 6e-41
Identities = 61/176 (34%), Positives = 100/176 (56%), Gaps = 5/176 (2%)
Query: 578 GTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQ 637
G + F + + + +++ F I + ++V YN IL + N I
Sbjct: 1 GVASFAKALAEGEDLLYEKPFL-----IRGTHGEVEVEVGFLHTQGYNAEILTYANMIPT 55
Query: 638 VDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQ 697
DGGTHLT +S +RA+N+Y ++ K+ + G+D+ EGL V+S+K+P+P+F Q
Sbjct: 56 RDGGTHLTAFKSAYSRALNQYAKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQ 115
Query: 698 TKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTREL 753
TK KL++ E V +++ + L + L+ENP +K + EK + AA++REAARK REL
Sbjct: 116 TKGKLLNPEAGTAVGQVVYERLLEILEENPRIAKAVYEKALRAAQAREAARKAREL 171
>d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B
{Escherichia coli [TaxId: 562]}
Length = 167
Score = 135 bits (342), Expect = 2e-37
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 7/171 (4%)
Query: 578 GTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENI-LCFTNNIL 636
G + +++ + F + + +D ++ W E + + N I
Sbjct: 2 GLNDYLAEAVNGLPTLPEKPF-----IGNFAGDTEAVDWALLWLPEGGELLTESYVNLIP 56
Query: 637 QVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNS 696
+ GGTH+ GLR G+ A+ ++ E L + +++ EDI + VLS+K+ DP+F
Sbjct: 57 TMQGGTHVNGLRQGLLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAG 115
Query: 697 QTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAA 747
QTK +L S + V ++ +L +N ++L+ E I +A+ R A
Sbjct: 116 QTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRA 166
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 239
Score = 134 bits (338), Expect = 6e-36
Identities = 47/252 (18%), Positives = 92/252 (36%), Gaps = 43/252 (17%)
Query: 348 SASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAG----------- 396
++ Q + LE + KRP+ YIG L E D I++++
Sbjct: 2 ASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEI 61
Query: 397 ------------YCTKINVTIYS-DNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTE 443
+I+V I++ +++I + ++G+GIPI+I +K E++
Sbjct: 62 LVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEI----HNKENIYIPEMIFGH 117
Query: 444 LHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFL--QLTINRNKKIHYMEFRYGVLQNRII 501
L ++ + K++GG +G G N S + + + ++ +
Sbjct: 118 LLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNM------ 171
Query: 502 KTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNG---V 558
I P TK+ F D F E +IL R + +N +
Sbjct: 172 ----SICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDINGSVRDI 227
Query: 559 CITLIDERIKKK 570
+ L + +K +
Sbjct: 228 NVYLNGKSLKIR 239
>d1ok7a1 d.131.1.1 (A:1-122) DNA polymerase III, beta subunit
{Escherichia coli [TaxId: 562]}
Length = 122
Score = 92.7 bits (230), Expect = 8e-23
Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M+ V + +L PLQ V + + LPIL N+L+ +S TD E+++ A
Sbjct: 1 MKFTVE--REHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVA 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ + V ARKF DI R LPE ++ + +E + M ++SG+S+F+L TL A ++P
Sbjct: 59 LVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPN 118
Query: 121 M 121
+
Sbjct: 119 L 119
>d1pvga1 d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 161
Score = 90.2 bits (223), Expect = 2e-21
Identities = 32/171 (18%), Positives = 69/171 (40%), Gaps = 13/171 (7%)
Query: 575 FKGGTSGFVSYINKSKLVVHPTIFQAIGNK--ISEKKNNINIDVSMQWNNSYNENILCFT 632
FK ++ + K + + + A + I ++ N +V+ ++ + I F
Sbjct: 2 FKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVSDISFQQI-SFV 60
Query: 633 NNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDP 692
N+I GGTH+ + I + I++ ++ KK K + I+ + ++ I +P
Sbjct: 61 NSIATTMGGTHVNYITDQIVKKISEILK-----KKKKKSVKSFQIKNNMFIFINCLIENP 115
Query: 693 KFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARS 743
F SQTK +L + I + + + + ++ E A +
Sbjct: 116 AFTSQTKEQLTTRVKDFGSRCEIPLEYINKIMKTD-----LATRMFEIADA 161
>d1ok7a2 d.131.1.1 (A:123-244) DNA polymerase III, beta subunit
{Escherichia coli [TaxId: 562]}
Length = 122
Score = 88.7 bits (219), Expect = 2e-21
Identities = 42/123 (34%), Positives = 70/123 (56%), Gaps = 1/123 (0%)
Query: 126 KYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQV 185
+ + EFTL Q T+K ++ FS+A QD+RYYLNG+L + + + V++DGHRL +
Sbjct: 1 QSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSM 60
Query: 186 NIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKF 245
I + S S I+ + + ++ L P+ ++I +N I+ + SKL+DG+F
Sbjct: 61 PIGQSLPSHSVIVPRKGVIELMRMLDGGDN-PLRVQIGSNNIRAHVGDFIFTSKLVDGRF 119
Query: 246 LDY 248
DY
Sbjct: 120 PDY 122
>d1vpka2 d.131.1.1 (A:121-243) DNA polymerase III, beta subunit
{Thermotoga maritima [TaxId: 2336]}
Length = 123
Score = 87.5 bits (216), Expect = 5e-21
Identities = 26/125 (20%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 125 SKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQ 184
++ F + L+ ++ V F+ A+ + LNG+ K + V+SDG RL +
Sbjct: 1 AESGITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRLVASDGFRLALAE 60
Query: 185 VNIDKKFSSCSDIIIPRKTVFTLQRLLENKENP-VELKISNNQIKIIFSNIEIISKLIDG 243
I+ + + ++ K++ +Q +L+N P + ++ ++ + +++E + +++D
Sbjct: 61 EQIENEEE--ASFLLSLKSMKEVQNVLDNTTEPTITVRYDGRRVSLSTNDVETVMRVVDA 118
Query: 244 KFLDY 248
+F DY
Sbjct: 119 EFPDY 123
>d1vpka1 d.131.1.1 (A:1-120) DNA polymerase III, beta subunit
{Thermotoga maritima [TaxId: 2336]}
Length = 120
Score = 83.9 bits (207), Expect = 8e-20
Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 3/122 (2%)
Query: 1 MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTA 60
M++ V + + + + KK++ PIL+ L +TD E +
Sbjct: 1 MKVTVT--TLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVN 58
Query: 61 VGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPI 120
+ +V +++ LP+ E + +E + I SG + F + T+ A E+P
Sbjct: 59 AAEISGEARFVVPGDVIQKMVKVLPD-EITELSLEGDALVISSGSTVFRITTMPADEFPE 117
Query: 121 MT 122
+T
Sbjct: 118 IT 119
>d1ok7a3 d.131.1.1 (A:245-366) DNA polymerase III, beta subunit
{Escherichia coli [TaxId: 562]}
Length = 122
Score = 43.4 bits (102), Expect = 1e-05
Identities = 23/66 (34%), Positives = 40/66 (60%)
Query: 251 VISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASEEL 310
V+ +K + L ++ R +I+SN+K +GVRL + N LKIT ++ +E+A E L
Sbjct: 3 VLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEIL 62
Query: 311 EINYNG 316
++ Y+G
Sbjct: 63 DVTYSG 68
>d1vpka3 d.131.1.1 (A:244-366) DNA polymerase III, beta subunit
{Thermotoga maritima [TaxId: 2336]}
Length = 123
Score = 42.7 bits (100), Expect = 3e-05
Identities = 20/84 (23%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 249 KYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASE 308
K VI ++ +V+R +L SL+R+ +I++ + V+ I+ N +++ S + + +
Sbjct: 1 KRVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMRLVSKSPDYGEVVD 60
Query: 309 ELEINYNGKDKNFI---KFLIKIM 329
E+E+ G+D KF+ ++
Sbjct: 61 EVEVQKEGEDLVIAFNPKFIEDVL 84
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon
Sulfolobus shibatae [TaxId: 2286]}
Length = 219
Score = 42.9 bits (100), Expect = 9e-05
Identities = 26/209 (12%), Positives = 54/209 (25%), Gaps = 16/209 (7%)
Query: 369 IGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDIKIDD 428
G + L+ V E+++N++D + +I + D+ R I + + D
Sbjct: 14 AGFPNPARALYQTVRELIENSLD-----ATDVHGILPNIKITIDLIDDARQI-YKVNVVD 67
Query: 429 KHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQ-LTINRNKKIH 487
N +G+G+ S+ Q I
Sbjct: 68 NGIGIPPQEVPNAFGRVLYSSKYVNRQTRGM--YGLGVKAAVLYSQMHQDKPIEIETSPV 125
Query: 488 YMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKR 547
+ Y I I V + GT + I + + +
Sbjct: 126 NSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAI----SIPGDWPKAKSRIYEY 181
Query: 548 IRELSFLNNGVCITLIDERIKKKEIFEFK 576
I+ + D + + +
Sbjct: 182 IKRTYIITPYAEFIFKDP---EGNVTYYP 207
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 40.2 bits (93), Expect = 5e-04
Identities = 29/197 (14%), Positives = 71/197 (36%), Gaps = 21/197 (10%)
Query: 382 VFEILDNAIDESLAGYCTKINVTI--YSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEI 439
V E+++N++D AG T I++ + Y + I +SDNG G+ + + + +
Sbjct: 11 VKELVENSLD---AG-ATNIDLKLKDYGVDLIEVSDNGCGVEEE---NFEGLTLKHHTSK 63
Query: 440 VMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNR 499
+ F + + G G LS + LS T + + K+ +
Sbjct: 64 IQE-------FADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTRLMFDHNGKII 116
Query: 500 IIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVC 559
+ + + + + ++ NI+ Y + + + ++ G+
Sbjct: 117 QKTPYPRPRGTTVSVQQLFSTLPVRH-----KEFQRNIKKEYAKMVQVLHAYCIISAGIR 171
Query: 560 ITLIDERIKKKEIFEFK 576
++ ++ + K
Sbjct: 172 VSCTNQLGQGKRQPVVC 188
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853
{Thermotoga maritima [TaxId: 2336]}
Length = 161
Score = 31.0 bits (70), Expect = 0.44
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 374 DGTGLHHFVFEILDNAIDESLAGYCTKINVTIYSDNS----ISISDNGRGIP 421
D T + + +L+N + S K I + I + DNG GIP
Sbjct: 46 DPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIP 97
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor
EnvZ {Escherichia coli [TaxId: 562]}
Length = 161
Score = 30.6 bits (69), Expect = 0.59
Identities = 15/110 (13%), Positives = 33/110 (30%), Gaps = 25/110 (22%)
Query: 374 DGTGLHHFVFEILDNAIDESLAGYCTKINVTIYSDNS---ISISDNGRGIPIDIKIDDKH 430
+ V ++ NA I V+ ++ + + D+G GI + +
Sbjct: 44 HPLSIKRAVANMVVNAARYG----NGWIKVSSGTEPNRAWFQVEDDGPGIAPE-QRKHLF 98
Query: 431 KPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTI 480
+P F + + G+GL+ V + +
Sbjct: 99 QP-----------------FVRGDSARTISGTGLGLAIVQRIVDNHNGML 131
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 148
Score = 30.2 bits (68), Expect = 0.74
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 374 DGTGLHHFVFEILDNAIDESLAGYCTKINVTIYSDNS-----ISISDNGRGIPID 423
GL V + NA+ + V + + +S I+I DNG G+P
Sbjct: 41 LPAGLRLAVDNAIANAVK-----HGGATLVQLSAVSSRAGVEIAIDDNGSGVPEG 90
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1449
Score = 30.6 bits (68), Expect = 1.3
Identities = 29/209 (13%), Positives = 70/209 (33%), Gaps = 20/209 (9%)
Query: 897 YKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYF-----------FKL 945
Y++ N + L + E + K L+ E ++K+ F + L
Sbjct: 896 YRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPL 955
Query: 946 IDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSNIEIIV 1005
+ I+ + I + D++L + + + + + ++ + +
Sbjct: 956 PVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVT 1015
Query: 1006 EFDQLNNKYLLN---IKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVIIQK 1062
F L L +++ L K+ + ++ I + + +V V+ +
Sbjct: 1016 LFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVG------VLAAQ 1069
Query: 1063 SIGEKIKKYTANNFYKIINYLRNEAENMV 1091
SIGE + T N F+ + +
Sbjct: 1070 SIGEPATQMTLNTFHFAGVASKKVTSGVP 1098
>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 139
Score = 29.1 bits (65), Expect = 1.7
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 689 IPDPKFNSQTKNKLVSSEVR---KPVEEIIIKTLFDFLQENPGESKL-ICEKIIEAARSR 744
+PDP +NS+ +L++ + K + I+ T FD ++E G+ + + E+ ++
Sbjct: 4 LPDPIYNSKLVTRLINKIMIDGKKSKAQKILYTAFDIIRERTGKDPMEVFEQALKNVMPV 63
Query: 745 EAARKTR 751
R R
Sbjct: 64 LEVRARR 70
>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
Length = 297
Score = 29.5 bits (66), Expect = 2.0
Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Query: 983 ENAEQFAKKIIKKLNDSNIEIIVEFDQ-LN--NKYLLNIKKKFLKK-KNYIID-INFINN 1037
+ AK++ + + + I +++ + NK L N K K K K+ I++ +N
Sbjct: 126 VKYKNVAKEVANDIKNFHGRNIRSYNEAMASLNKVLANPKMKVNKSDKDAIVNAWKQVNA 185
Query: 1038 KDYKKLVSIISTFKKIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVI 1092
KD + + K+ + ++K + I+ Y N+ L E E+ +I
Sbjct: 186 KDMANKIGNLGKAFKVADLAIKVEKIREKSIEGYNTGNW----GPLLLEVESWII 236
>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase
{Escherichia coli [TaxId: 562]}
Length = 206
Score = 29.2 bits (64), Expect = 2.1
Identities = 13/98 (13%), Positives = 25/98 (25%), Gaps = 1/98 (1%)
Query: 987 QFAKKIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSI 1046
FA + + L S ++ F Q + K K + +
Sbjct: 13 DFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQE 72
Query: 1047 ISTFKKIIGKGVIIQKSIGEKIKKYTANNF-YKIINYL 1083
+ V++ + G + K IN
Sbjct: 73 NQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVH 110
>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId:
562]}
Length = 174
Score = 28.9 bits (65), Expect = 2.2
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 6/112 (5%)
Query: 983 ENAEQFAKKIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKK-KNYIID-INFINNKDY 1040
AEQ A+++ + I + E + KY +I KK K + I + + D
Sbjct: 19 AKAEQLAREMAGQAKGKKIRNVEEALKTYEKYRADINKKINAKDRAAIAAALESVKLSDI 78
Query: 1041 KKLVSIISTFKKIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVI 1092
++ S GK + I E K N+ L + E ++
Sbjct: 79 SSNLNRFSRGLGYAGKFTSLADWITEFGKAVRTENW----RPLFVKTETIIA 126
>d1w96a1 b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C subdomain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 116
Score = 28.1 bits (62), Expect = 2.4
Identities = 6/42 (14%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 526 HFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERI 567
+ + +E+ ++L F +N + +D+ I
Sbjct: 79 ELSIRGDFRTTVEYLIKLL----ETEDFEDNTITTGWLDDLI 116
>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli
[TaxId: 562]}
Length = 150
Score = 28.3 bits (63), Expect = 3.0
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 689 IPDPKFNSQTKNKLVSSEVR---KPVEEIIIKTLFDFLQENPGESKL-ICEKIIEAARSR 744
+PDPKF S+ K V+ + K E I+ + + L + G+S+L E +E R
Sbjct: 11 LPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPT 70
Query: 745 EAARKTR 751
+ R
Sbjct: 71 VEVKSRR 77
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat
(Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Length = 190
Score = 28.1 bits (62), Expect = 4.3
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 374 DGTGLHHFVFEILDNAIDESLAGY-----CTKINVTIYSDN---SISISDNGRGIPID 423
+ L+H +FE+ NA+ ++ + I + + SI +SD G G+P+
Sbjct: 57 VPSHLYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLR 114
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory
subunit HisZ {Thermotoga maritima [TaxId: 2336]}
Length = 275
Score = 27.8 bits (61), Expect = 6.6
Identities = 12/98 (12%), Positives = 30/98 (30%), Gaps = 4/98 (4%)
Query: 302 NREKASEELEINYNGKDKNFIKFLIKIMLLKNKNSYDIQDTQESSYSASSIQILEGLEAV 361
+ A E + D + ++ +I+ + + + S + L+
Sbjct: 156 TKNLAEIEFLSHMKKIDLSRVEKIIEDSIYRRSPEHLKTMDLPLSVREDLLSASSFLQEK 215
Query: 362 RKRPEMYIGDTSDGTGLH---HFVFEILDNAIDESLAG 396
+ I D + + +F I D + +A
Sbjct: 216 FPTVSVEI-DLTLARTIEEYCGLIFTIYDTSSSRLVAA 252
>g1o7d.3 c.6.2.1 (A:51-342,B:347-384) Lysosomal alpha-mannosidase
{Cow (Bos taurus) [TaxId: 9913]}
Length = 330
Score = 28.1 bits (62), Expect = 7.0
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 877 YRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEER 916
++ + KLI+ + + Y CYL ++ +
Sbjct: 279 FKNLDKLIQL----VNAQIRVNVLYSTPACYL-WELNKAN 313
>d1fvpa_ c.1.16.2 (A:) Non-fluorescent flavoprotein (luxF, FP390)
{Photobacterium phosphoreum [TaxId: 659]}
Length = 231
Score = 27.8 bits (61), Expect = 7.4
Identities = 12/99 (12%), Positives = 33/99 (33%), Gaps = 3/99 (3%)
Query: 906 CYLRDDIEEERYMLKIAFKNV--KLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQII 963
+ + + LK+ +N I + Y + V L
Sbjct: 132 VNVNEAETVAKEELKLYIENYVACTQPSNFNGSIDSIIQSNVTGSYKDCLSYVANLAGKF 191
Query: 964 DISILSAIMSDVILNLDTRENA-EQFAKKIIKKLNDSNI 1001
D ++ + + + + + +++ ++IK D+N+
Sbjct: 192 DNTVDFLLCFESMQDQNKKKSVMIDLNNQVIKFRQDNNL 230
>d1t95a1 a.5.8.1 (A:87-161) Hypothetical protein AF0491, middle
domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 75
Score = 25.8 bits (57), Expect = 8.1
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 947 DKYNKTIEIVHRL------KQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKL 996
K + I + R S + + + +++D ++ E K I+K L
Sbjct: 18 AKRKQIINFISRNTIDPRTNAPHPPSRIERALEEAKVHIDIFKSVEAQVKDIVKAL 73
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.382
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,389,570
Number of extensions: 229503
Number of successful extensions: 1000
Number of sequences better than 10.0: 1
Number of HSP's gapped: 971
Number of HSP's successfully gapped: 112
Length of query: 1161
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 1066
Effective length of database: 1,103,246
Effective search space: 1176060236
Effective search space used: 1176060236
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.6 bits)