Query psy13362
Match_columns 216
No_of_seqs 245 out of 991
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 17:33:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13362.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13362hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3489|consensus 99.9 4.4E-24 9.6E-29 160.9 10.6 76 138-214 7-82 (86)
2 KOG1733|consensus 99.9 1.9E-21 4.2E-26 148.7 8.1 64 2-66 28-96 (97)
3 KOG1733|consensus 99.8 7.7E-21 1.7E-25 145.4 10.7 73 142-215 19-91 (97)
4 PF02953 zf-Tim10_DDP: Tim10/D 99.8 3.8E-21 8.3E-26 137.5 7.9 66 146-211 1-66 (66)
5 KOG3489|consensus 99.8 7E-20 1.5E-24 138.2 8.2 63 2-65 20-83 (86)
6 PF02953 zf-Tim10_DDP: Tim10/D 99.7 4.9E-18 1.1E-22 121.4 6.9 59 2-60 6-65 (66)
7 KOG3480|consensus 99.6 9.4E-16 2E-20 116.4 9.6 65 150-214 16-81 (90)
8 KOG3479|consensus 99.6 1.6E-15 3.5E-20 114.2 7.2 62 153-214 6-67 (83)
9 KOG3480|consensus 99.3 2.7E-12 5.8E-17 97.7 6.6 61 3-63 18-80 (90)
10 KOG3479|consensus 99.3 5.8E-12 1.3E-16 95.0 6.7 57 8-64 10-67 (83)
11 KOG3377|consensus 90.7 1.3 2.9E-05 36.9 7.4 70 145-216 70-143 (143)
12 PF05811 DUF842: Eukaryotic pr 89.2 2.5 5.4E-05 34.3 7.8 66 144-211 61-130 (131)
13 PF05811 DUF842: Eukaryotic pr 75.9 9.8 0.00021 30.8 6.1 58 3-60 67-129 (131)
14 KOG3377|consensus 70.5 13 0.00028 31.1 5.7 58 3-60 75-137 (143)
15 PF05892 Tricho_coat: Trichovi 67.9 10 0.00022 33.3 4.7 80 125-205 84-179 (194)
No 1
>KOG3489|consensus
Probab=99.91 E-value=4.4e-24 Score=160.91 Aligned_cols=76 Identities=49% Similarity=0.993 Sum_probs=72.8
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy13362 138 KANSNKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMFIANRLTQRTNG 214 (216)
Q Consensus 138 ~~~~~~elqq~l~qe~q~~q~q~l~~klT~~CF~KCV~~~~~~~Lss~E~sCI~nCv~Kyldt~~~V~~r~~e~~q~ 214 (216)
+++.++|+++||++|.|++++++++|+||+.||+||| .+|+++||++|++|+.|||+||||++.+|.+||+.+.++
T Consensus 7 l~~~~~el~~fl~~E~qk~k~~~~VHqft~~CWdKCi-~~~~sklds~~e~ClsnCV~RfiDts~~I~~r~~~~~~~ 82 (86)
T KOG3489|consen 7 LDANDPELQQFLEAETQKQKFQEQVHQFTEICWDKCI-EKPGSKLDSSEETCLSNCVNRFIDTSLFIVKRLAQMNQG 82 (86)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3788999999999999999999999999999999999 788899999999999999999999999999999998775
No 2
>KOG1733|consensus
Probab=99.85 E-value=1.9e-21 Score=148.69 Aligned_cols=64 Identities=30% Similarity=0.564 Sum_probs=60.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCchhhHHHHHHHHHHH-----HHHHhHHHHHHHHhcCC
Q psy13362 2 LEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDSFP-----VFHHFNKPSQIERLNFD 66 (216)
Q Consensus 2 ~E~~~a~~q~lv~~lt~~Cf~KCi~~~p~~~Ls~~E~~Cl~~Cv~rf~-----~s~~~~~Rlq~~~~~~~ 66 (216)
.+.|+|++|+||++|+++||+|||+ +||++|+++|++||++|++||| |+++|+.|||+|+++..
T Consensus 28 qqlAvAnAqeLv~kisekCf~KCit-~PGssl~~~e~~Cis~CmdRyMdawniVSrty~sRlQre~a~~~ 96 (97)
T KOG1733|consen 28 QQLAVANAQELVSKISEKCFDKCIT-KPGSSLDSSEKSCISRCMDRYMDAWNIVSRTYISRLQREQASGE 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4679999999999999999999996 9999999999999999999998 89999999999998754
No 3
>KOG1733|consensus
Probab=99.85 E-value=7.7e-21 Score=145.42 Aligned_cols=73 Identities=26% Similarity=0.551 Sum_probs=69.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy13362 142 NKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMFIANRLTQRTNGL 215 (216)
Q Consensus 142 ~~elqq~l~qe~q~~q~q~l~~klT~~CF~KCV~~~~~~~Lss~E~sCI~nCv~Kyldt~~~V~~r~~e~~q~~ 215 (216)
+.+++.++.++++.++.++++++++++||+||| ++|+++|++.|+.||++|++||||+|+.|++.|..++|+.
T Consensus 19 ~~~~m~qVkqqlAvAnAqeLv~kisekCf~KCi-t~PGssl~~~e~~Cis~CmdRyMdawniVSrty~sRlQre 91 (97)
T KOG1733|consen 19 EGELMNQVKQQLAVANAQELVSKISEKCFDKCI-TKPGSSLDSSEKSCISRCMDRYMDAWNIVSRTYISRLQRE 91 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 449999999999999999999999999999999 7999999999999999999999999999999999888753
No 4
>PF02953 zf-Tim10_DDP: Tim10/DDP family zinc finger; InterPro: IPR004217 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc binding domain with four conserved cysteine residues. Members of this family include subunits 8, 9, 10 and 13 of the mitochondrial inner membrane translocase complex, which are involved in mitochondrial protein import [, ]. Defects in TIM8 are the cause of 2 human syndromes: Mohr-Tranebjaerg syndrome (MTS) [MIM:304700]; also known as dystonia-deafness syndrome (DDS) or X-linked progressive deafness type 1 (DFN-1). It is a recessive neurodegenerative syndrome characterised by postlingual progressive sensorineural deafness as the first presenting symptom in early childhood, followed by progressive dystonia, spasticity, dysphagia, mental deterioration, paranoia and cortical blindness. Jensen syndrome [MIM:311150]; also known as opticoacoustic nerve atrophy with dementia. This X-linked disease is characterised by deafness, blindness and muscle weakness. The small alpha helical proteins Tim8 and Tim13 assemble into a hexameric complex which can bind Tim23 as its substrate and chaperone the hydrophobic Tim23 across the aqueous membrane space []. More information on zinc fingers can be found at Protein of the Month: Zinc Fingers [].; GO: 0006626 protein targeting to mitochondrion, 0045039 protein import into mitochondrial inner membrane, 0042719 mitochondrial intermembrane space protein transporter complex; PDB: 2BSK_B 3CJH_A 3DXR_A.
Probab=99.85 E-value=3.8e-21 Score=137.49 Aligned_cols=66 Identities=36% Similarity=0.732 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13362 146 EDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMFIANRLTQR 211 (216)
Q Consensus 146 qq~l~qe~q~~q~q~l~~klT~~CF~KCV~~~~~~~Lss~E~sCI~nCv~Kyldt~~~V~~r~~e~ 211 (216)
|++++++++++.++++++++++.||+|||+++|+++||++|++||+||++||+|++.+|+++|+++
T Consensus 1 q~~~~~~~q~~~~~~~~~~~t~~Cf~kCv~~~~~~~L~~~E~~Ci~~C~~ky~~~~~~v~~~~~~~ 66 (66)
T PF02953_consen 1 QQQLMQEQQMKDFQELFNKLTERCFDKCVTKFPSSSLSSKEESCIDNCVDKYIDTNQFVSKRFQQM 66 (66)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHS-TTSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 468899999999999999999999999997779999999999999999999999999999999875
No 5
>KOG3489|consensus
Probab=99.81 E-value=7e-20 Score=138.22 Aligned_cols=63 Identities=40% Similarity=0.774 Sum_probs=58.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCchhhHHHHHHHHHHHHHH-HhHHHHHHHHhcC
Q psy13362 2 LEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDSFPVFH-HFNKPSQIERLNF 65 (216)
Q Consensus 2 ~E~~~a~~q~lv~~lt~~Cf~KCi~~~p~~~Ls~~E~~Cl~~Cv~rf~~s~-~~~~Rlq~~~~~~ 65 (216)
.|++||++|++||+||+.||+||| .+|+++||++|++||.|||+|||+.. .+++|++++....
T Consensus 20 ~E~qk~k~~~~VHqft~~CWdKCi-~~~~sklds~~e~ClsnCV~RfiDts~~I~~r~~~~~~~~ 83 (86)
T KOG3489|consen 20 AETQKQKFQEQVHQFTEICWDKCI-EKPGSKLDSSEETCLSNCVNRFIDTSLFIVKRLAQMNQGH 83 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-cCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 589999999999999999999999 58999999999999999999999655 7899999987754
No 6
>PF02953 zf-Tim10_DDP: Tim10/DDP family zinc finger; InterPro: IPR004217 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc binding domain with four conserved cysteine residues. Members of this family include subunits 8, 9, 10 and 13 of the mitochondrial inner membrane translocase complex, which are involved in mitochondrial protein import [, ]. Defects in TIM8 are the cause of 2 human syndromes: Mohr-Tranebjaerg syndrome (MTS) [MIM:304700]; also known as dystonia-deafness syndrome (DDS) or X-linked progressive deafness type 1 (DFN-1). It is a recessive neurodegenerative syndrome characterised by postlingual progressive sensorineural deafness as the first presenting symptom in early childhood, followed by progressive dystonia, spasticity, dysphagia, mental deterioration, paranoia and cortical blindness. Jensen syndrome [MIM:311150]; also known as opticoacoustic nerve atrophy with dementia. This X-linked disease is characterised by deafness, blindness and muscle weakness. The small alpha helical proteins Tim8 and Tim13 assemble into a hexameric complex which can bind Tim23 as its substrate and chaperone the hydrophobic Tim23 across the aqueous membrane space []. More information on zinc fingers can be found at Protein of the Month: Zinc Fingers [].; GO: 0006626 protein targeting to mitochondrion, 0045039 protein import into mitochondrial inner membrane, 0042719 mitochondrial intermembrane space protein transporter complex; PDB: 2BSK_B 3CJH_A 3DXR_A.
Probab=99.74 E-value=4.9e-18 Score=121.41 Aligned_cols=59 Identities=32% Similarity=0.571 Sum_probs=51.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCchhhHHHHHHHHHHHHHH-HhHHHHHH
Q psy13362 2 LEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDSFPVFH-HFNKPSQI 60 (216)
Q Consensus 2 ~E~~~a~~q~lv~~lt~~Cf~KCi~~~p~~~Ls~~E~~Cl~~Cv~rf~~s~-~~~~Rlq~ 60 (216)
.|.+++.++.++++|++.||+|||+.+|+++||++|++||+||++||+.+. .+++|+++
T Consensus 6 ~~~q~~~~~~~~~~~t~~Cf~kCv~~~~~~~L~~~E~~Ci~~C~~ky~~~~~~v~~~~~~ 65 (66)
T PF02953_consen 6 QEQQMKDFQELFNKLTERCFDKCVTKFPSSSLSSKEESCIDNCVDKYIDTNQFVSKRFQQ 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-TTSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 578999999999999999999999867999999999999999999999655 67888876
No 7
>KOG3480|consensus
Probab=99.65 E-value=9.4e-16 Score=116.42 Aligned_cols=65 Identities=23% Similarity=0.523 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy13362 150 MLEREKAKMTAQMFEFNDICWDKCMTDK-PGQRLDSKTETCIVNCVDRFIDISMFIANRLTQRTNG 214 (216)
Q Consensus 150 ~qe~q~~q~q~l~~klT~~CF~KCV~~~-~~~~Lss~E~sCI~nCv~Kyldt~~~V~~r~~e~~q~ 214 (216)
++|++...+.+++|+++..|++|||+.. ..++|+++|..||||||.||++++..|+++++.+.+.
T Consensus 16 ~Ae~E~emm~d~fNrl~~tC~~KCI~~~y~EaeLtKGE~~CiDRCVaKy~~~n~~vG~~lq~~~~~ 81 (90)
T KOG3480|consen 16 MAELEVEMMSDMFNRLTNTCHKKCIPPRYKEAELTKGESVCIDRCVAKYLDVNEKVGKKLQAMGQG 81 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccCchhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 7888999999999999999999999855 9999999999999999999999999999999998765
No 8
>KOG3479|consensus
Probab=99.61 E-value=1.6e-15 Score=114.17 Aligned_cols=62 Identities=18% Similarity=0.575 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy13362 153 REKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMFIANRLTQRTNG 214 (216)
Q Consensus 153 ~q~~q~q~l~~klT~~CF~KCV~~~~~~~Lss~E~sCI~nCv~Kyldt~~~V~~r~~e~~q~ 214 (216)
.+...|--+||++|+.||..||+++..++|+++|++|+.+|++||++.++||++||++....
T Consensus 6 k~lkDFl~~YN~ltE~CF~dCV~dft~r~l~~~Ee~C~~~C~~Kflk~nqRv~qrf~e~~~~ 67 (83)
T KOG3479|consen 6 KQLKDFLTLYNKLTELCFSDCVDDFTTRDLSGKEETCVMRCAEKFLKMNQRVSQRFQELQAA 67 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666689999999999999999999999999999999999999999999999997543
No 9
>KOG3480|consensus
Probab=99.33 E-value=2.7e-12 Score=97.69 Aligned_cols=61 Identities=21% Similarity=0.355 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCC-CCCCCCCchhhHHHHHHHHHHHHHH-HhHHHHHHHHh
Q psy13362 3 EREKAKMTAQMFEFNDICWDKCMTD-KPGQRLDSKTETCIVNCVDSFPVFH-HFNKPSQIERL 63 (216)
Q Consensus 3 E~~~a~~q~lv~~lt~~Cf~KCi~~-~p~~~Ls~~E~~Cl~~Cv~rf~~s~-~~~~Rlq~~~~ 63 (216)
|.+..-+-+++|+|+..|++|||+. +..+.|+++|+.||++||.||+.++ .+++++|.+..
T Consensus 18 e~E~emm~d~fNrl~~tC~~KCI~~~y~EaeLtKGE~~CiDRCVaKy~~~n~~vG~~lq~~~~ 80 (90)
T KOG3480|consen 18 ELEVEMMSDMFNRLTNTCHKKCIPPRYKEAELTKGESVCIDRCVAKYLDVNEKVGKKLQAMGQ 80 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccccccccCchhhHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3334444568999999999999975 7889999999999999999999777 67999988654
No 10
>KOG3479|consensus
Probab=99.30 E-value=5.8e-12 Score=95.01 Aligned_cols=57 Identities=19% Similarity=0.483 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCchhhHHHHHHHHHHH-HHHHhHHHHHHHHhc
Q psy13362 8 KMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDSFP-VFHHFNKPSQIERLN 64 (216)
Q Consensus 8 ~~q~lv~~lt~~Cf~KCi~~~p~~~Ls~~E~~Cl~~Cv~rf~-~s~~~~~Rlq~~~~~ 64 (216)
.|-.+||+||+.||..||+++....|+++|++|+.+|++||+ .+++++.|+|+.+..
T Consensus 10 DFl~~YN~ltE~CF~dCV~dft~r~l~~~Ee~C~~~C~~Kflk~nqRv~qrf~e~~~~ 67 (83)
T KOG3479|consen 10 DFLTLYNKLTELCFSDCVDDFTTRDLSGKEETCVMRCAEKFLKMNQRVSQRFQELQAA 67 (83)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344579999999999999999999999999999999999999 556899999997653
No 11
>KOG3377|consensus
Probab=90.73 E-value=1.3 Score=36.90 Aligned_cols=70 Identities=17% Similarity=0.291 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC----CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy13362 145 LEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQ----RLDSKTETCIVNCVDRFIDISMFIANRLTQRTNGLD 216 (216)
Q Consensus 145 lqq~l~qe~q~~q~q~l~~klT~~CF~KCV~~~~~~----~Lss~E~sCI~nCv~Kyldt~~~V~~r~~e~~q~~~ 216 (216)
-|+++..| +.+||+-+++-.-.|-||=-..++.+ +.-.....|+.+||+.++.+---+.+++.+.+..++
T Consensus 70 aQ~~~~~E--l~~FQ~RL~Rc~m~C~Dk~~~~~~~~~~~~~~~~~~e~Cvn~cvd~~v~liP~m~k~MK~al~~~~ 143 (143)
T KOG3377|consen 70 AQQYVQSE--LGKFQDRLNRCLMVCNDKFEASKLQGSKRLKAVQQFESCVNKCVDDHVGLIPTMVKRMKEALSIGG 143 (143)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHhHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCC
Confidence 35555555 45699988888888887743333222 355566789999999999999999999988766543
No 12
>PF05811 DUF842: Eukaryotic protein of unknown function (DUF842); InterPro: IPR008560 This family consists of a number of conserved eukaryotic proteins of unknown function. The sequences carry three sets of CxxxC motifs, which might suggest a type of zinc-finger formation.
Probab=89.15 E-value=2.5 Score=34.28 Aligned_cols=66 Identities=18% Similarity=0.402 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCC---CCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13362 144 DLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDK-PGQ---RLDSKTETCIVNCVDRFIDISMFIANRLTQR 211 (216)
Q Consensus 144 elqq~l~qe~q~~q~q~l~~klT~~CF~KCV~~~-~~~---~Lss~E~sCI~nCv~Kyldt~~~V~~r~~e~ 211 (216)
..+..+..|+ .+||+-+++-.-.|.+|=-..+ ++. .....=..|+..||++|+..---|.+|+.+.
T Consensus 61 ~aq~~vq~El--~~FQ~rlqrC~~~C~dk~~d~~~~~~~~~~~~~~~e~C~~~Cvd~hi~llP~l~~r~k~~ 130 (131)
T PF05811_consen 61 QAQNYVQNEL--EQFQNRLQRCVMHCQDKAKDKMDPNPNESDAEKQLESCVNKCVDDHIKLLPSLTKRMKKS 130 (131)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 4455555554 4688888887778888744222 111 1122235799999999999999999988753
No 13
>PF05811 DUF842: Eukaryotic protein of unknown function (DUF842); InterPro: IPR008560 This family consists of a number of conserved eukaryotic proteins of unknown function. The sequences carry three sets of CxxxC motifs, which might suggest a type of zinc-finger formation.
Probab=75.88 E-value=9.8 Score=30.81 Aligned_cols=58 Identities=19% Similarity=0.381 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCC-CCCC---CCchhhHHHHHHHHHHH-HHHHhHHHHHH
Q psy13362 3 EREKAKMTAQMFEFNDICWDKCMTDK-PGQR---LDSKTETCIVNCVDSFP-VFHHFNKPSQI 60 (216)
Q Consensus 3 E~~~a~~q~lv~~lt~~Cf~KCi~~~-p~~~---Ls~~E~~Cl~~Cv~rf~-~s~~~~~Rlq~ 60 (216)
+....+||+-+++=+-.|.+|=-... |++. ....=+.|+..||+.|+ ..-.+.+||..
T Consensus 67 q~El~~FQ~rlqrC~~~C~dk~~d~~~~~~~~~~~~~~~e~C~~~Cvd~hi~llP~l~~r~k~ 129 (131)
T PF05811_consen 67 QNELEQFQNRLQRCVMHCQDKAKDKMDPNPNESDAEKQLESCVNKCVDDHIKLLPSLTKRMKK 129 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 45566777777766666666632111 1111 11233679999999998 44466666653
No 14
>KOG3377|consensus
Probab=70.54 E-value=13 Score=31.12 Aligned_cols=58 Identities=21% Similarity=0.295 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCCCC----CCchhhHHHHHHHHHHH-HHHHhHHHHHH
Q psy13362 3 EREKAKMTAQMFEFNDICWDKCMTDKPGQR----LDSKTETCIVNCVDSFP-VFHHFNKPSQI 60 (216)
Q Consensus 3 E~~~a~~q~lv~~lt~~Cf~KCi~~~p~~~----Ls~~E~~Cl~~Cv~rf~-~s~~~~~Rlq~ 60 (216)
+....+||+-+++=+-.|-||=-..+|.++ .-.-.+.|+++||+.++ ..-++.+|+.+
T Consensus 75 ~~El~~FQ~RL~Rc~m~C~Dk~~~~~~~~~~~~~~~~~~e~Cvn~cvd~~v~liP~m~k~MK~ 137 (143)
T KOG3377|consen 75 QSELGKFQDRLNRCLMVCNDKFEASKLQGSKRLKAVQQFESCVNKCVDDHVGLIPTMVKRMKE 137 (143)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 455677777777777778776432333332 44456789999999998 33466666654
No 15
>PF05892 Tricho_coat: Trichovirus coat protein; InterPro: IPR008879 This family consists of several coat proteins which are specific to the ssRNA positive-strand, no DNA stage viruses such as the Trichoviruses and Vitiviruses.; GO: 0019028 viral capsid
Probab=67.88 E-value=10 Score=33.26 Aligned_cols=80 Identities=18% Similarity=0.127 Sum_probs=60.8
Q ss_pred hhhhhhcccccCCCCC---------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCC----CCCCCCchhhH
Q psy13362 125 RIHAFARISTSGLKAN---------SNKDLEDFLMLEREKAKMTAQMFEFNDICWDK---CMTDK----PGQRLDSKTET 188 (216)
Q Consensus 125 ~~~~f~s~s~~g~~~~---------~~~elqq~l~qe~q~~q~q~l~~klT~~CF~K---CV~~~----~~~~Lss~E~s 188 (216)
+|-+|+.+++.|...+ .-++.+.+|......-.+..++.++++.|++. |. || +-..|++.|++
T Consensus 84 ~ik~~~~~~~~~~i~~~TlRQmCEpFA~eA~~~L~~l~~~g~~TnL~~Kmp~~g~k~PqV~F-DFn~GL~l~~L~~~e~~ 162 (194)
T PF05892_consen 84 MIKAFSNTSSEGPIKGMTLRQMCEPFAPEAYNFLVKLASMGVYTNLYKKMPKLGGKEPQVMF-DFNSGLDLSRLTKEEAK 162 (194)
T ss_pred HHHHHHHhcCCCccccccHHHHHHHHHHHHHHHHHHHHhcchHhHHHHhhHhhcCCCCeEee-ecccCcchhhcCHHHHH
Confidence 5778999999887553 34566667766666777888999999988753 22 33 66789999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy13362 189 CIVNCVDRFIDISMFIA 205 (216)
Q Consensus 189 CI~nCv~Kyldt~~~V~ 205 (216)
+|.|+-.|-+.+-..-+
T Consensus 163 vIq~ln~RLfrtE~aK~ 179 (194)
T PF05892_consen 163 VIQNLNQRLFRTEGAKS 179 (194)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999998865443
Done!