RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13362
         (216 letters)



>gnl|CDD|202484 pfam02953, zf-Tim10_DDP, Tim10/DDP family zinc finger.  Putative
           zinc binding domain with four conserved cysteine
           residues. This domain is found in the human disease
           protein TIMM8A. Members of this family such as Tim9 and
           Tim10 are involved in mitochondrial protein import.
           Members of this family seem to be localised to the
           mitochondrial intermembrane space.
          Length = 66

 Score = 77.3 bits (191), Expect = 5e-19
 Identities = 20/66 (30%), Positives = 37/66 (56%)

Query: 146 EDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMFIA 205
           +  LM E +KA     + +  + C+ KC+T  PG  L    E+C+  CV++++D +  ++
Sbjct: 1   QQQLMQELQKANFQELINKLTENCFKKCVTKFPGSSLSKGEESCLDRCVEKYLDANNRVS 60

Query: 206 NRLTQR 211
            RL +R
Sbjct: 61  KRLQER 66



 Score = 58.8 bits (143), Expect = 5e-12
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 1  MLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDSF 48
          M E +KA     + +  + C+ KC+T  PG  L    E+C+  CV+ +
Sbjct: 5  MQELQKANFQELINKLTENCFKKCVTKFPGSSLSKGEESCLDRCVEKY 52


>gnl|CDD|220932 pfam10996, Beta-Casp, Beta-Casp domain.  The beta-CASP domain is
          found C terminal to the beta-lactamase domain in
          pre-mRNA 3'-end-processing endonuclease. The active
          site of this enzyme is located at the interface of
          these two domains.
          Length = 124

 Score = 28.4 bits (64), Expect = 1.7
 Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 3/45 (6%)

Query: 33 LDSKTETCIVNCVDSFPVFHHFNKPSQIERLNFDDGS---ISTSG 74
          L    +  ++     F          + + LN   G    I++SG
Sbjct: 43 LSDSAKEFLLRGAFPFDNLKFVRSVDESKELNNLGGPKVIIASSG 87


>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein
           Kinase, MAP/ERK Kinase 1.  Protein kinases (PKs),
           MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain.
           PKs catalyze the transfer of the gamma-phosphoryl group
           from ATP to serine/threonine or tyrosine residues on
           protein substrates. The MEK subfamily is part of a
           larger superfamily that includes the catalytic domains
           of other protein serine/threonine kinases, protein
           tyrosine kinases, RIO kinases, aminoglycoside
           phosphotransferase, choline kinase, and phosphoinositide
           3-kinase. The mitogen-activated protein (MAP) kinase
           signaling pathways are important mediators of cellular
           responses to extracellular signals. The pathways involve
           a triple kinase core cascade comprising the MAP kinase
           (MAPK), which is phosphorylated and activated by a MAPK
           kinase (MAPKK or MKK), which itself is phosphorylated
           and activated by a MAPK kinase kinase (MAPKKK or MKKK).
           MEK1 is a dual-specificity PK that phosphorylates and
           activates the downstream targets, extracellular
           signal-regulated kinase (ERK) 1 and ERK2, on specific
           threonine and tyrosine residues. The ERK cascade starts
           with extracellular signals including growth factors,
           hormones, and neurotransmitters, which act through
           receptors and ion channels to initiate intracellular
           signaling that leads to the activation at the MAPKKK
           (Raf-1 or MOS) level, which leads to the transmission of
           signals to MEK1, and finally to ERK1/2. The ERK cascade
           plays an important role in cell proliferation,
           differentiation, oncogenic transformation, and cell
           cycle control, as well as in apoptosis and cell survival
           under certain conditions. Gain-of-function mutations in
           genes encoding ERK cascade proteins, including MEK1,
           cause cardiofaciocutaneous (CFC) syndrome, a condition
           leading to multiple congenital anomalies and mental
           retardation in patients. MEK1 also plays a role in cell
           cycle control.
          Length = 333

 Score = 28.8 bits (64), Expect = 2.4
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 12/65 (18%)

Query: 15  EFNDICWDKCMTDKPGQRLDSKTETCIVNCVDSFPVFHHFNKPSQIERLNFDDGSISTSG 74
           EF D   +KC+   P +R D K             + H F K S+ E ++F     ST G
Sbjct: 274 EFQDFV-NKCLIKNPAERADLKQL-----------MVHAFIKRSEAEEVDFAGWLCSTIG 321

Query: 75  LKANS 79
           L   S
Sbjct: 322 LNQPS 326


>gnl|CDD|110972 pfam02024, Leptin, Leptin. 
          Length = 146

 Score = 26.9 bits (59), Expect = 6.0
 Identities = 15/39 (38%), Positives = 19/39 (48%)

Query: 178 PGQRLDSKTETCIVNCVDRFIDISMFIANRLTQRTNGLD 216
           P Q++   T+T I   V R  DIS   +    QR  GLD
Sbjct: 2   PIQKVQDDTKTLIKTIVTRINDISHTQSVSSKQRVTGLD 40


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0769    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,478,721
Number of extensions: 933529
Number of successful extensions: 551
Number of sequences better than 10.0: 1
Number of HSP's gapped: 551
Number of HSP's successfully gapped: 6
Length of query: 216
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 123
Effective length of database: 6,812,680
Effective search space: 837959640
Effective search space used: 837959640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.7 bits)