RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13362
(216 letters)
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic
heterohexamer, chaperone, M binding, mitochondrion,
protein transport; 2.60A {Saccharomyces cerevisiae}
Length = 64
Score = 82.2 bits (203), Expect = 4e-21
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 149 LMLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMFIANRL 208
L E K K+ + +F +IC+ KC+ L S+ E C+ NCV+RF+D ++ I N L
Sbjct: 1 LEGENSKQKVQMSIHQFTNICFKKCVESVNDSNLSSQEEQCLSNCVNRFLDTNIRIVNGL 60
Query: 209 TQ 210
Sbjct: 61 QN 62
Score = 62.9 bits (153), Expect = 9e-14
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 1 MLEREKAKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDSF 48
E K K+ + +F +IC+ KC+ L S+ E C+ NCV+ F
Sbjct: 2 EGENSKQKVQMSIHQFTNICFKKCVESVNDSNLSSQEEQCLSNCVNRF 49
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9;
alpha-propeller, helix-turn-helix, intramolecular
disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Length = 89
Score = 48.8 bits (116), Expect = 2e-08
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 142 NKDLEDFLMLEREKAKMTAQMFEFN---DICWDKCMTDKPGQRLDSKTETCIVNCVDRFI 198
N + E+ +M M ++ + C+ C+ D +L +K +TCI+ C ++F+
Sbjct: 7 NSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCSEKFL 66
Query: 199 DISMFIANRLTQ 210
S + R +
Sbjct: 67 KHSERVGQRFQE 78
Score = 38.4 bits (89), Expect = 1e-04
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 5 EKAKMTAQMFEFN---DICWDKCMTDKPGQRLDSKTETCIVNCVDSF 48
E+ +M M ++ + C+ C+ D +L +K +TCI+ C + F
Sbjct: 19 EQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCSEKF 65
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10;
protein transport, mitochondrial protein import, TIM
complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Length = 90
Score = 48.9 bits (116), Expect = 3e-08
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 142 NKDLEDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQR-LDSKTETCIVNCVDRFIDI 200
+ L E E M C KC+ + L C+ CV +++DI
Sbjct: 2 DPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDI 61
Query: 201 SMFIANRLTQRT 212
+ +LT+ +
Sbjct: 62 HERMGKKLTELS 73
Score = 35.8 bits (82), Expect = 0.002
Identities = 10/49 (20%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 1 MLEREKAKMTAQMFEFNDICWDKCMTDKPGQR-LDSKTETCIVNCVDSF 48
E E M C KC+ + L C+ CV +
Sbjct: 10 AAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKY 58
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10;
alpha-propeller, helix-turn-helix, intramolecular
disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Length = 95
Score = 45.0 bits (106), Expect = 9e-07
Identities = 10/67 (14%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 146 EDFLMLEREKAKMTAQMFEFNDICWDKCMTDKPGQR-LDSKTETCIVNCVDRFIDISMFI 204
+ E E +T + + C+ KC+ + L+ +C+ CV ++ + ++ +
Sbjct: 19 QKIQAAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQV 78
Query: 205 ANRLTQR 211
+ +
Sbjct: 79 GENMQKM 85
Score = 33.0 bits (75), Expect = 0.013
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 1 MLEREKAKMTAQMFEFNDICWDKCMTDKPGQR-LDSKTETCIVNCVDSF 48
E E +T + + C+ KC+ + L+ +C+ CV +
Sbjct: 23 AAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKY 71
>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic
heterohexamer, chaperone, M binding, mitochondrion,
protein transport; 2.60A {Saccharomyces cerevisiae}
Length = 64
Score = 43.3 bits (102), Expect = 2e-06
Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 156 AKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFID----ISMFIANRLTQ- 210
A T + + ++ C++KC+T P ++ + CI C+ +++ IS +R+
Sbjct: 3 ANATELVNKISENCFEKCLT-SPY---ATRNDACIDQCLAKYMRSWNVISKAYISRIQNA 58
Query: 211 RTNG 214
+G
Sbjct: 59 SASG 62
Score = 35.2 bits (81), Expect = 0.001
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 7 AKMTAQMFEFNDICWDKCMTDKPGQRLDSKTETCIVNCVDSF 48
A T + + ++ C++KC+T P ++ + CI C+ +
Sbjct: 3 ANATELVNKISENCFEKCLT-SPY---ATRNDACIDQCLAKY 40
>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A;
protein transport, mitochondrial protein import, TIM
complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Length = 89
Score = 40.0 bits (93), Expect = 4e-05
Identities = 9/65 (13%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 149 LMLEREKAKMTAQMFEFN---DICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMFIA 205
+ + + + +N + C+ C+ D + + + TC +C+ +++ ++ I+
Sbjct: 5 IPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRIS 64
Query: 206 NRLTQ 210
R +
Sbjct: 65 MRFQE 69
Score = 33.5 bits (76), Expect = 0.009
Identities = 7/54 (12%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 3 EREKAKMTAQMFEFN---DICWDKCMTDKPGQRLDSKTETCIVNCVDSFPVFHH 53
+ + + +N + C+ C+ D + + + TC +C+ +
Sbjct: 8 SDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQ 61
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.006
Identities = 23/100 (23%), Positives = 31/100 (31%), Gaps = 29/100 (29%)
Query: 47 SFPV-----FH------HFNK--PSQIERLNFDDGSISTSGLKANSNKDLEDFLMLEREK 93
V F FNK P E DD + + L K L ++ E
Sbjct: 19 VLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG---KFL-GYVSSLVEP 74
Query: 94 AKMTAQTGSTCFISPRVITLGLRFGFGYKILR---IHAFA 130
+K+ +V+ L L F L IHA A
Sbjct: 75 SKVGQFD--------QVLNLCLTE-FENCYLEGNDIHALA 105
Score = 34.3 bits (78), Expect = 0.032
Identities = 29/124 (23%), Positives = 43/124 (34%), Gaps = 43/124 (34%)
Query: 17 NDICWDKCMTDKP------GQRLDSKTETC---IVNCVDSFPVF----HHFNKPSQIERL 63
N++ ++ P G L + + IV+C+ PV F K + I L
Sbjct: 446 NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQF-KATHI--L 502
Query: 64 NFDDGSISTSGLKANSNKDLEDFLMLEREKAKMTAQTGSTCFISPRVITLG-LRFG---- 118
+F G S G+ + NKD TG RVI G L
Sbjct: 503 DFGPGGASGLGVLTHRNKDG----------------TGV------RVIVAGTLDINPDDD 540
Query: 119 FGYK 122
+G+K
Sbjct: 541 YGFK 544
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.53
Identities = 22/129 (17%), Positives = 36/129 (27%), Gaps = 53/129 (41%)
Query: 38 ETCIVNCVDSFPVF----HHFNKPSQIER--------LNFDDGSISTSGLKANSNKDLED 85
+ I +D + + HH ER L+F
Sbjct: 462 DDLIPPYLDQY-FYSHIGHHLKNIEHPERMTLFRMVFLDF-------------------R 501
Query: 86 FLMLEREKAKMTAQTGSTCFISPRVITLG-LRFGFGYK--ILRIHA-FARISTSGLKANS 141
FL + K+ + + + TL L+F YK I + R+
Sbjct: 502 FL-----EQKIRHDSTAWNASGSILNTLQQLKF---YKPYICDNDPKYERLV-------- 545
Query: 142 NKDLEDFLM 150
+ DFL
Sbjct: 546 -NAILDFLP 553
Score = 28.7 bits (63), Expect = 1.6
Identities = 25/192 (13%), Positives = 54/192 (28%), Gaps = 56/192 (29%)
Query: 10 TAQMFEFNDIC------WDKCMTDKPGQRLDSKTETCIVNCVDSFPVFHHFNKPSQIERL 63
F + C K +TD L + T T ++ P +++ L
Sbjct: 258 AWNAFNLS--CKILLTTRFKQVTD----FLSAAT-TTHISLDHHSMTLT----PDEVKSL 306
Query: 64 NFDDGSISTSGLKANSNKDLEDFLMLEREKAKMTAQTGSTCFISPRVITL---GLRFGFG 120
L + +D L RE +PR +++ +R G
Sbjct: 307 -----------LLKYLDCRPQD---LPRE----------VLTTNPRRLSIIAESIRDGLA 342
Query: 121 ----YKILRIHAFARI---STSGLKANSNKDL-EDFLMLEREKAKMTAQMFEFNDICWDK 172
+K + I S + L+ + + + + A + + + W
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF-PPSAHIPTILLS---LIWFD 398
Query: 173 CMTDKPGQRLDS 184
+ ++
Sbjct: 399 VIKSDVMVVVNK 410
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics,
joint center for structural genomics, JCSG; HET: MSE
UNL; 2.32A {Haemophilus somnus 129PT}
Length = 312
Score = 27.4 bits (60), Expect = 3.4
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 58 SQIERLNFDDGSISTSGLKANSNKDLEDFLMLEREKAKMTAQTGSTCFISPRVITLGLRF 117
++I +N + ++ +K N M E ++ + P V +G
Sbjct: 50 NEIWLINDEVQTV---FVKINERSYRS---MFRAEADQLALLAKTNSINVPLVYGIGNSQ 103
Query: 118 GFGYKIL 124
G + +L
Sbjct: 104 GHSFLLL 110
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit;
hydrolase, metallo-beta-lactamase, beta-CAsp, RNA
processing; 2.59A {Methanosarcina mazei}
Length = 640
Score = 26.5 bits (59), Expect = 7.8
Identities = 4/31 (12%), Positives = 11/31 (35%), Gaps = 3/31 (9%)
Query: 47 SFPVFHHFNKPSQIERLNFDDGS---ISTSG 74
F + +++ + ++TSG
Sbjct: 482 LSECFKPVDSHEARQKIIQNPQPCVILATSG 512
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease,
hydrolase, metal- nuclease, RNA-binding, rRNA
processing; HET: FLC; 2.05A {Thermus thermophilus} PDB:
2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A*
2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Length = 431
Score = 26.3 bits (59), Expect = 8.4
Identities = 5/47 (10%), Positives = 12/47 (25%), Gaps = 5/47 (10%)
Query: 33 LDSKTETCIVNCVD--SFPVFHHFNKPSQIERLNFDDGS---ISTSG 74
+ + + + + LN G ++ SG
Sbjct: 268 FSEEVQAHFLQGKNPFRPAGLEVVEHTEASKALNRAPGPMVVLAGSG 314
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.135 0.410
Gapped
Lambda K H
0.267 0.0498 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,197,713
Number of extensions: 175318
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 22
Length of query: 216
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 126
Effective length of database: 4,188,903
Effective search space: 527801778
Effective search space used: 527801778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.5 bits)