RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13362
         (216 letters)



>d2bska1 g.83.1.1 (A:13-85) Mitochondrial import inner membrane
           translocase subunit Tim9 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 73

 Score = 57.5 bits (139), Expect = 4e-12
 Identities = 9/55 (16%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 157 KMTAQMF-EFNDICWDKCMTDKPGQRLDSKTETCIVNCVDRFIDISMFIANRLTQ 210
           K     + +  + C+  C+ D   + +  +  TC  +C+ +++ ++  I+ R  +
Sbjct: 3   KEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQE 57



 Score = 45.6 bits (108), Expect = 1e-07
 Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 8  KMTAQMF-EFNDICWDKCMTDKPGQRLDSKTETCIVNCVDSFPVFHHF 54
          K     + +  + C+  C+ D   + +  +  TC  +C+  +      
Sbjct: 3  KEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQR 50


>d2bskb1 g.83.1.1 (B:13-77) Mitochondrial import inner membrane
           translocase subunit Tim10 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 65

 Score = 53.2 bits (128), Expect = 2e-10
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 157 KMTAQMFE-FNDICWDKCMT-DKPGQRLDSKTETCIVNCVDRFIDISMFIANRLTQRT 212
           +M A M+      C  KC+        L      C+  CV +++DI   +  +LT+ +
Sbjct: 4   EMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTELS 61



 Score = 38.9 bits (91), Expect = 2e-05
 Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 2/43 (4%)

Query: 8  KMTAQMFE-FNDICWDKCMT-DKPGQRLDSKTETCIVNCVDSF 48
          +M A M+      C  KC+        L      C+  CV  +
Sbjct: 4  EMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKY 46


>d1vf8a1 c.1.8.5 (A:1-245,A:316-372) Chitinase-like lectin ym1,
           saccharide binding domain {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 302

 Score = 25.5 bits (55), Expect = 4.9
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 126 IHAFARISTSGLKANSNKDLEDFLMLEREKAK 157
           I+AFA +  + +     +DL D+  L   K K
Sbjct: 34  IYAFAGMQNNEITYTHEQDLRDYEALNGLKDK 65


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0673    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 794,954
Number of extensions: 34867
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 5
Length of query: 216
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 134
Effective length of database: 1,281,736
Effective search space: 171752624
Effective search space used: 171752624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.5 bits)