BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13364
(285 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 153 VELEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQK 212
+E + + E C + ++D+ MG I N PSG+NR+ L + T ++
Sbjct: 165 IEKNKISLEFCKYIVLDEADRMLDMGF--EPQIRKIIEESNMPSGINRQTLMFSATFPKE 222
Query: 213 SPILAGNFAVWGAMFSTI 230
LA +F ++ +F T+
Sbjct: 223 IQKLAADF-LYNYIFMTV 239
>pdb|3CZP|A Chain A, Crystal Structure Of Putative Polyphosphate Kinase 2 From
Pseudomonas Aeruginosa Pa01
pdb|3CZP|B Chain B, Crystal Structure Of Putative Polyphosphate Kinase 2 From
Pseudomonas Aeruginosa Pa01
Length = 500
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 10/64 (15%)
Query: 127 ELRSSPVMERYVNYGENLVHVEATPEVELEEYAREPCPWRIVDDCGGAFTMGLIGGALFH 186
+ + S V +R+V+YGE + L +R+ PW +V+ + +G L
Sbjct: 182 DWKQSEVYDRFVHYGERV----------LRRTSRDYAPWYVVEGADERYRALTVGRILLE 231
Query: 187 GIKG 190
G++
Sbjct: 232 GLQA 235
>pdb|4ETU|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 Mutant
R2939s
Length = 210
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 86 FEPAPNQGTSII------SFYN-FLTYRY-RWIYLRGHRPLTYGYNKSKELRSSPVMERY 137
F+P P + ++I SF N F Y + +W + + +YG N +EL++ P++ Y
Sbjct: 5 FDPRPVETLNVIIPEKLDSFINKFAEYTHEKWAFDKIQNNWSYGENVDEELKTHPMLRPY 64
Query: 138 VNYGE 142
+ E
Sbjct: 65 KTFSE 69
>pdb|3RQR|A Chain A, Crystal Structure Of The Ryr Domain Of The Rabbit
Ryanodine Receptor
Length = 227
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 86 FEPAPNQGTSII------SFYN-FLTYRY-RWIYLRGHRPLTYGYNKSKELRSSPVMERY 137
F+P P + ++I SF N F Y + +W + + +YG N +EL++ P++ Y
Sbjct: 22 FDPRPVETLNVIIPEKLDSFINKFAEYTHEKWAFDKIQNNWSYGENVDEELKTHPMLRPY 81
Query: 138 VNYGE 142
+ E
Sbjct: 82 KTFSE 86
>pdb|4ETT|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 Mutant
E2764k
Length = 210
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 86 FEPAPNQGTSII------SFYN-FLTYRYR-WIYLRGHRPLTYGYNKSKELRSSPVMERY 137
F+P P + ++I SF N F Y ++ W + + +YG N +EL++ P++ Y
Sbjct: 5 FDPRPVETLNVIIPEKLDSFINKFAEYTHKKWAFDKIQNNWSYGENVDEELKTHPMLRPY 64
Query: 138 VNYGE 142
+ E
Sbjct: 65 KTFSE 69
>pdb|4ERT|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1
(2734-2940)
Length = 210
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 86 FEPAPNQGTSII------SFYN-FLTYRY-RWIYLRGHRPLTYGYNKSKELRSSPVMERY 137
F+P P + ++I SF N F Y + +W + + +YG N +EL++ P++ Y
Sbjct: 5 FDPRPVETLNVIIPEKLDSFINKFAEYTHEKWAFDKIQNNWSYGENVDEELKTHPMLRPY 64
Query: 138 VNYGE 142
+ E
Sbjct: 65 KTFSE 69
>pdb|4ESU|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 Mutant
S2776m
Length = 210
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 86 FEPAPNQGTSII------SFYN-FLTYRY-RWIYLRGHRPLTYGYNKSKELRSSPVMERY 137
F+P P + ++I SF N F Y + +W + + YG N +EL++ P++ Y
Sbjct: 5 FDPRPVETLNVIIPEKLDSFINKFAEYTHEKWAFDKIQNNWMYGENVDEELKTHPMLRPY 64
Query: 138 VNYGE 142
+ E
Sbjct: 65 KTFSE 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,940,629
Number of Sequences: 62578
Number of extensions: 385185
Number of successful extensions: 867
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 867
Number of HSP's gapped (non-prelim): 11
length of query: 285
length of database: 14,973,337
effective HSP length: 98
effective length of query: 187
effective length of database: 8,840,693
effective search space: 1653209591
effective search space used: 1653209591
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)