Query psy13364
Match_columns 285
No_of_seqs 247 out of 979
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 17:36:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13364.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13364hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00980 3a0801so1tim17 mitoc 100.0 5.4E-33 1.2E-37 240.9 11.3 128 155-284 1-129 (170)
2 PTZ00236 mitochondrial import 100.0 2.5E-31 5.4E-36 229.0 11.5 114 155-270 3-116 (164)
3 TIGR00983 3a0801s02tim23 mitoc 99.9 1.7E-27 3.7E-32 203.1 11.5 138 138-275 4-144 (149)
4 KOG1652|consensus 99.9 1E-28 2.2E-33 213.3 1.6 127 155-283 1-128 (183)
5 KOG3225|consensus 99.9 1.7E-26 3.7E-31 195.8 6.4 135 148-282 27-163 (168)
6 PF02466 Tim17: Tim17/Tim22/Ti 99.9 1E-22 2.2E-27 167.8 12.1 122 162-283 1-125 (128)
7 PTZ00236 mitochondrial import 99.9 3E-22 6.5E-27 172.8 8.4 95 5-104 50-150 (164)
8 TIGR00980 3a0801so1tim17 mitoc 99.9 1.4E-21 3E-26 169.7 10.0 78 4-81 47-125 (170)
9 KOG3324|consensus 99.8 6.8E-21 1.5E-25 166.8 8.2 140 132-271 40-183 (206)
10 KOG1652|consensus 99.8 5.9E-21 1.3E-25 165.2 4.8 78 4-81 47-125 (183)
11 TIGR00983 3a0801s02tim23 mitoc 99.8 4E-19 8.7E-24 151.7 7.7 76 5-80 73-148 (149)
12 KOG3225|consensus 99.7 2.3E-17 4.9E-22 140.4 2.6 76 5-80 84-159 (168)
13 PF02466 Tim17: Tim17/Tim22/Ti 99.7 4.1E-16 8.8E-21 128.4 8.6 81 4-84 44-125 (128)
14 COG5596 TIM22 Mitochondrial im 99.6 3.7E-16 8E-21 136.1 0.5 144 138-281 16-185 (191)
15 KOG3324|consensus 99.5 1.6E-14 3.4E-19 126.9 7.0 76 5-80 116-191 (206)
16 COG5596 TIM22 Mitochondrial im 99.1 9.3E-12 2E-16 108.8 -0.1 76 5-80 107-182 (191)
17 KOG4608|consensus 96.9 0.00021 4.5E-09 65.4 -0.3 62 205-266 123-184 (270)
18 KOG4096|consensus 96.4 0.0023 5.1E-08 48.3 2.3 70 159-233 3-72 (75)
19 KOG1398|consensus 95.5 0.32 6.8E-06 47.9 13.1 225 21-257 85-343 (460)
20 KOG4608|consensus 95.5 0.0031 6.8E-08 57.8 -0.5 67 12-78 129-195 (270)
21 PF10247 Romo1: Reactive mitoc 95.1 0.023 5E-07 42.6 3.2 66 161-231 1-66 (67)
22 KOG1398|consensus 67.7 6.1 0.00013 39.2 3.7 48 14-61 299-346 (460)
23 PF10439 Bacteriocin_IIc: Bact 33.3 97 0.0021 22.6 4.5 44 32-75 10-57 (65)
24 PF12732 YtxH: YtxH-like prote 30.4 60 0.0013 24.0 3.0 37 173-210 3-39 (74)
25 PF10439 Bacteriocin_IIc: Bact 24.7 1.7E+02 0.0037 21.3 4.5 48 232-279 11-62 (65)
26 COG4980 GvpP Gas vesicle prote 21.6 2.3E+02 0.0051 23.4 5.2 44 174-218 6-49 (115)
27 PF13436 Gly-zipper_OmpA: Glyc 21.0 1.4E+02 0.003 24.4 3.7 38 43-80 51-90 (118)
28 COG3558 Uncharacterized protei 20.2 48 0.001 28.0 0.8 19 230-248 11-29 (154)
No 1
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=100.00 E-value=5.4e-33 Score=240.86 Aligned_cols=128 Identities=56% Similarity=1.028 Sum_probs=121.4
Q ss_pred HHHhhcCCCcchhhhhcchhhHHHHHHHHHHHhhhccccCCcchhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhHHhHH
Q psy13364 155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSL 234 (285)
Q Consensus 155 ~~d~~~e~C~~r~~~s~g~G~~~G~~~Gg~~~~~~G~r~~p~~~k~r~~~~l~~~~~r~~~~g~~fa~iG~~ys~~ec~l 234 (285)
|+|+.|||||+|++++++.+|.+|+++|+++++++|+||+|.+ +|+++.++.+++|+++++++||+||++|+++||++
T Consensus 1 ~~~~~r~pcp~r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g--~rl~g~l~av~~rap~~g~~Fav~g~lys~~ec~i 78 (170)
T TIGR00980 1 MEEYTREPCPYRILDDFGGAFAMGTIGGSIFQAFKGFRNSPKG--EKLVGAMRAIKTRAPVLGGNFAVWGGLFSTIDCAV 78 (170)
T ss_pred CcccccCCCcchhHHhhhHHHHHHHHHHHHHHHHHHhhcCCcc--chhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999865 68999999999999999999999999999999999
Q ss_pred HHHhhcCCchhHHHHHHHHhhhhcccCChHHHH-HHHHHHHHHHHHhhccC
Q psy13364 235 VYVRKKEDPWNSIISGAATGGILAARNGVPAMA-GSALIGGKLKRLDFNCL 284 (285)
Q Consensus 235 e~~RgkdD~~Nsv~AG~~TGa~l~~~~G~~a~~-g~a~~aAfs~aid~~~~ 284 (285)
+++|+|||+||+++|||+||++|+.++|+++++ .|+..++++.+||+.++
T Consensus 79 ~~~R~KeD~~NsiiAG~~TGa~l~~r~G~~a~~~~aa~gg~~la~ie~~g~ 129 (170)
T TIGR00980 79 VAIRKKEDPWNSIISGFLTGAALAVRGGPRAMRGSAILGACILAVIEGVGL 129 (170)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987 56778999999999874
No 2
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=99.97 E-value=2.5e-31 Score=229.02 Aligned_cols=114 Identities=53% Similarity=1.003 Sum_probs=107.9
Q ss_pred HHHhhcCCCcchhhhhcchhhHHHHHHHHHHHhhhccccCCcchhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhHHhHH
Q psy13364 155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSL 234 (285)
Q Consensus 155 ~~d~~~e~C~~r~~~s~g~G~~~G~~~Gg~~~~~~G~r~~p~~~k~r~~~~l~~~~~r~~~~g~~fa~iG~~ys~~ec~l 234 (285)
+.|+.|||||+|+++++|.+|.+|+++|+++++++|+||+|.+ +++++.++.+++|+|+++++||+||++|+++||++
T Consensus 3 ~~~~~r~pcp~ri~dd~G~af~~G~vgG~~~~~~~G~rnsp~g--~rl~g~l~~~~~rap~~g~~FAv~G~~ys~~ec~~ 80 (164)
T PTZ00236 3 ERDLSREPCPDRIIEDMGGAFSMGCIGGFIWHFLKGMRNSPKG--ERFSGGFYLLRKRAPILGGNFAIWGGLFSTFDCTL 80 (164)
T ss_pred hhhhCcCCCchHHHHhccHHHHHHHHHHHHHHHHHHHHhCCCc--chHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999975 78999999999999999999999999999999999
Q ss_pred HHHhhcCCchhHHHHHHHHhhhhcccCChHHHHHHH
Q psy13364 235 VYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSA 270 (285)
Q Consensus 235 e~~RgkdD~~Nsv~AG~~TGa~l~~~~G~~a~~g~a 270 (285)
+++|+|||+||+++|||+||++|+.++||++++.++
T Consensus 81 ~~~R~K~D~~Nsi~AG~~TGa~l~~r~G~~~~~~~a 116 (164)
T PTZ00236 81 QYLRGKEDHWNAIASGFFTGGVLAIRGGWRSAVRNA 116 (164)
T ss_pred HHHHccCchHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 999999999999999999999999999999865433
No 3
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=99.95 E-value=1.7e-27 Score=203.07 Aligned_cols=138 Identities=20% Similarity=0.276 Sum_probs=116.4
Q ss_pred cccCccccCCCCChHHHHHHh-hcCCCcchhhhhcchhhHHHHHHHHHHHhhhccccCCc--chhhhhhHHHHHHhhhhh
Q psy13364 138 VNYGENLVHVEATPEVELEEY-AREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPS--GMNRRFLGMTTTIKQKSP 214 (285)
Q Consensus 138 lN~d~~l~~~~~~~e~~~~d~-~~e~C~~r~~~s~g~G~~~G~~~Gg~~~~~~G~r~~p~--~~k~r~~~~l~~~~~r~~ 214 (285)
||+|+.+++++.++...++.. -+..+.++....+|.+|.+|.++|+++++++|+++.|. +.|+|+++++|++.++++
T Consensus 4 l~~~~~~l~~~~~~~~~~~g~~~~R~~~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~~~~~~k~rln~~ln~~~~~g~ 83 (149)
T TIGR00983 4 LDKDPEYLVQEEDELSLLTGANPSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQSMPWTKLRLNQILNMVTRRGP 83 (149)
T ss_pred CCCCcHHHcCcchhhcCCCCCCCCCChhhhhhhhHhHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhHhH
Confidence 777877776554443332221 22356777888899999999999999999999998774 468999999999999999
Q ss_pred hhhHHHHHHHHHHHhHHhHHHHHhhcCCchhHHHHHHHHhhhhcccCChHHHHHHHHHHHH
Q psy13364 215 ILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGK 275 (285)
Q Consensus 215 ~~g~~fa~iG~~ys~~ec~le~~RgkdD~~Nsv~AG~~TGa~l~~~~G~~a~~g~a~~aAf 275 (285)
+++++||+|+++|+++||.++++|+|||+||+++|||+||++|++++||++++.+++++++
T Consensus 84 ~~G~~~g~~g~lys~~e~~i~~~R~k~D~~Nsv~AGa~TGal~~~~~G~r~~~~g~~~G~~ 144 (149)
T TIGR00983 84 FWGNTLGILALVYNGINSIIEATRGKHDDFNSVAAGALTGALYKSTRGLRGMARSGALGAT 144 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHhccChHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999999999998755554443
No 4
>KOG1652|consensus
Probab=99.94 E-value=1e-28 Score=213.29 Aligned_cols=127 Identities=61% Similarity=1.059 Sum_probs=119.3
Q ss_pred HHHhhcCCCcchhhhhcchhhHHHHHHHHHHHhhhccccCCcchhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhHHhHH
Q psy13364 155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSL 234 (285)
Q Consensus 155 ~~d~~~e~C~~r~~~s~g~G~~~G~~~Gg~~~~~~G~r~~p~~~k~r~~~~l~~~~~r~~~~g~~fa~iG~~ys~~ec~l 234 (285)
++|+.+|||+.+++++++..|.||++.|++|++++|++|+|.+ .|+.+.++.++.+++.+|++||+||++||.+||++
T Consensus 1 ~~e~sr~pcp~riv~d~g~afamg~igG~~f~~ikG~~nap~G--~r~~gg~~av~~~ap~~ggsFAvwgglfSt~dC~L 78 (183)
T KOG1652|consen 1 MMEYSREPCPIRIVDDCGGAFAMGTIGGSVFQLIKGFRNAPSG--ARLVGGISAVKMRAPQSGGSFAVWGGLFSTVDCAL 78 (183)
T ss_pred CCcccCCCCCceeeccccchhhhcccccceeeeeeeeecCCcc--cccccchhhhhccCcccccceeeeechhhHHHHHH
Confidence 3577899999999999999999999999999999999999987 69999999999999999999999999999999999
Q ss_pred HHHhhcCCchhHHHHHHHHhhhhcccCChHHHHHHHH-HHHHHHHHhhcc
Q psy13364 235 VYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSAL-IGGKLKRLDFNC 283 (285)
Q Consensus 235 e~~RgkdD~~Nsv~AG~~TGa~l~~~~G~~a~~g~a~-~aAfs~aid~~~ 283 (285)
..+|+|||.||++++||+||++|+.++|+++++.+|+ +++++..+|-.+
T Consensus 79 v~~R~KeDpwNsivsGa~TGg~La~r~g~~a~~~sa~~~g~~lamieg~g 128 (183)
T KOG1652|consen 79 VAIRKKEDPWNSIVSGAATGGLLAARGGPKAMLTSAITGGLLLAMIEGLG 128 (183)
T ss_pred HHHhcccchHHHHHHHhhccceeeccccHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999996655 788888888654
No 5
>KOG3225|consensus
Probab=99.93 E-value=1.7e-26 Score=195.79 Aligned_cols=135 Identities=25% Similarity=0.301 Sum_probs=110.6
Q ss_pred CCChHHHHHHhhcCCCcchhhhhcchhhHHHHHHHHHHHhhhccccCCcc-hhhhhhHHHHHHhhhhhhhhHHHHHHHHH
Q psy13364 148 EATPEVELEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSG-MNRRFLGMTTTIKQKSPILAGNFAVWGAM 226 (285)
Q Consensus 148 ~~~~e~~~~d~~~e~C~~r~~~s~g~G~~~G~~~Gg~~~~~~G~r~~p~~-~k~r~~~~l~~~~~r~~~~g~~fa~iG~~ 226 (285)
..++++.......++|+.|++.+++.||++|.++|.+...+.-=.+.|+- .+.-+.+.++++.+|+.++++||+++|++
T Consensus 27 ~~~~~e~r~le~~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~~s~~knF~~iGlv 106 (168)
T KOG3225|consen 27 VGDPTEMRYLEEENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRSGSYAKNFAIIGLV 106 (168)
T ss_pred cCChHHHHHHHHhcchhHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhhcchhhhhhhhhhh
Confidence 34555543333457999999999999999999996555444311244532 22233455799999999999999999999
Q ss_pred HHhHHhHHHHHhhcCCchhHHHHHHHHhhhhcccCChHHH-HHHHHHHHHHHHHhhc
Q psy13364 227 FSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAM-AGSALIGGKLKRLDFN 282 (285)
Q Consensus 227 ys~~ec~le~~RgkdD~~Nsv~AG~~TGa~l~~~~G~~a~-~g~a~~aAfs~aid~~ 282 (285)
|+++||++|++|.|+||+|++++||+||+.++.|+||+++ ++|++|++||++||+.
T Consensus 107 fsg~Ec~iE~~RAK~D~~NgaiaG~vtGg~l~~raGp~a~~~G~agfa~fS~~id~y 163 (168)
T KOG3225|consen 107 FSGVECLIESFRAKSDWYNGAIAGCVTGGSLGYRAGPKAAAIGCAGFAAFSAAIDKY 163 (168)
T ss_pred ehhHHHHHHHHHhhhchhcceeeeeeeccchhhcccchhhhhchhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999995 5999999999999985
No 6
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=99.89 E-value=1e-22 Score=167.82 Aligned_cols=122 Identities=33% Similarity=0.640 Sum_probs=109.5
Q ss_pred CCcchhhhhcchhhHHHHHHHHHHHhhhccccC--CcchhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhHHhHHHHHhh
Q psy13364 162 PCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNA--PSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRK 239 (285)
Q Consensus 162 ~C~~r~~~s~g~G~~~G~~~Gg~~~~~~G~r~~--p~~~k~r~~~~l~~~~~r~~~~g~~fa~iG~~ys~~ec~le~~Rg 239 (285)
||++|++++++.++.+|.++|++....++.... ....+++++..++.+.+++++.+.+||.++++|+++||.+|++|+
T Consensus 1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~ 80 (128)
T PF02466_consen 1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRG 80 (128)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 799999999999999999999998888543211 223567999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHhhhhcccCChHHHH-HHHHHHHHHHHHhhcc
Q psy13364 240 KEDPWNSIISGAATGGILAARNGVPAMA-GSALIGGKLKRLDFNC 283 (285)
Q Consensus 240 kdD~~Nsv~AG~~TGa~l~~~~G~~a~~-g~a~~aAfs~aid~~~ 283 (285)
|||+||+++||++||++++.+.|++.++ +++++++++.++|+..
T Consensus 81 k~D~~N~~~aG~~aGa~~~~~~g~~~~~~~~~~~a~~~~~~~~~~ 125 (128)
T PF02466_consen 81 KDDPWNSAIAGAAAGAVLGLRSGPRGMASGAALGAAFAAAVEYYG 125 (128)
T ss_pred ccccchhHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999976 6688999999999864
No 7
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=99.87 E-value=3e-22 Score=172.75 Aligned_cols=95 Identities=42% Similarity=0.749 Sum_probs=86.0
Q ss_pred hhhHHHhhhcccchhhHHHHHHHHhhHhHHHHHHHhccCchhHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHH-H--
Q psy13364 5 GMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKVRTL-E-- 81 (285)
Q Consensus 5 ~~l~~~~~r~~~~g~~fa~~g~~ys~~e~~~~~~R~k~D~~N~~~aG~~tGa~l~~~~G~~~~~~~a~~gg~~~~~-e-- 81 (285)
+.++.+++|+|.++++||+||++|+++||+++++|+|||+||+++|||+||++|+++.||++++.++++||+++++ |
T Consensus 50 g~l~~~~~rap~~g~~FAv~G~~ys~~ec~~~~~R~K~D~~Nsi~AG~~TGa~l~~r~G~~~~~~~a~~Gg~~~~~ie~~ 129 (164)
T PTZ00236 50 GGFYLLRKRAPILGGNFAIWGGLFSTFDCTLQYLRGKEDHWNAIASGFFTGGVLAIRGGWRSAVRNAIFGGILLGIIELV 129 (164)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999887 5
Q ss_pred ---HhhhcCCCCCCCcchhhhhhccc
Q psy13364 82 ---LVLLFEPAPNQGTSIISFYNFLT 104 (285)
Q Consensus 82 ---~~~~~~~~p~~~~~~~~~~~~~~ 104 (285)
++|..++.|++ .|++.+.
T Consensus 130 ~i~~~~~~~~~~~~-----~~~~~~~ 150 (164)
T PTZ00236 130 SIGMNRRQMRTPRQ-----QFQQQQE 150 (164)
T ss_pred HHHHHHHhhhhhhH-----HHHHHHH
Confidence 67777766665 4555543
No 8
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=99.86 E-value=1.4e-21 Score=169.67 Aligned_cols=78 Identities=59% Similarity=1.027 Sum_probs=76.2
Q ss_pred chhhHHHhhhcccchhhHHHHHHHHhhHhHHHHHHHhccCchhHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHH-H
Q psy13364 4 VGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKVRTL-E 81 (285)
Q Consensus 4 ~~~l~~~~~r~~~~g~~fa~~g~~ys~~e~~~~~~R~k~D~~N~~~aG~~tGa~l~~~~G~~~~~~~a~~gg~~~~~-e 81 (285)
++.++++++|+|+++++||+||++|+++||+++++|+|||+||+++|||+||++|++|+|+++++.+|+++|+++++ |
T Consensus 47 ~g~l~av~~rap~~g~~Fav~g~lys~~ec~i~~~R~KeD~~NsiiAG~~TGa~l~~r~G~~a~~~~aa~gg~~la~ie 125 (170)
T TIGR00980 47 VGAMRAIKTRAPVLGGNFAVWGGLFSTIDCAVVAIRKKEDPWNSIISGFLTGAALAVRGGPRAMRGSAILGACILAVIE 125 (170)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999988 6
No 9
>KOG3324|consensus
Probab=99.83 E-value=6.8e-21 Score=166.79 Aligned_cols=140 Identities=20% Similarity=0.222 Sum_probs=113.2
Q ss_pred CccccccccCccccCCCCChHHHHHHhhc--CCCcchhhhhcchhhHHHHHHHHHHHhhhccccCCc--chhhhhhHHHH
Q psy13364 132 PVMERYVNYGENLVHVEATPEVELEEYAR--EPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPS--GMNRRFLGMTT 207 (285)
Q Consensus 132 ~~~~~YlN~d~~l~~~~~~~e~~~~d~~~--e~C~~r~~~s~g~G~~~G~~~Gg~~~~~~G~r~~p~--~~k~r~~~~l~ 207 (285)
..+|+|+|.|+.+..+++++....+|-.. ....+.....+|.++..|.++|++.+.+.|+++.+. ..|.|++.+||
T Consensus 40 ~~ld~~~n~d~ly~~~~~pefl~~~eg~~~~rgw~E~l~f~tG~~yl~G~~iGa~~G~~~Glk~~e~~~~~Klr~nrILN 119 (206)
T KOG3324|consen 40 QPLDKPLNVDYLYLLPDQPEFLFPEEGAIKRRGWFENLTFGTGWAYLTGSAIGAFNGLILGLKNTENGASGKLRLNRILN 119 (206)
T ss_pred cccccccccchhhhccCCccccCchhccccccchhhhhheeccchhccchhhhhHHHHHHhhhcCCCCCccchhHHHHhh
Confidence 34788898888887777666443333321 224444555567777777777788888888887765 36899999999
Q ss_pred HHhhhhhhhhHHHHHHHHHHHhHHhHHHHHhhcCCchhHHHHHHHHhhhhcccCChHHHHHHHH
Q psy13364 208 TIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSAL 271 (285)
Q Consensus 208 ~~~~r~~~~g~~fa~iG~~ys~~ec~le~~RgkdD~~Nsv~AG~~TGa~l~~~~G~~a~~g~a~ 271 (285)
++.++++.++++.++++.+|+++|..+++.|+|||++|+|.||++||+++++..|+|+++.+++
T Consensus 120 ~~t~~G~~~gN~lG~laL~YsaiesgI~~~R~~dd~lnsv~AGalTGalyrs~~Glr~~av~ga 183 (206)
T KOG3324|consen 120 SVTRRGRFWGNTLGSLALMYSAIESGIEATRGKDDDLNSVAAGALTGALYRSTRGLRAAAVAGA 183 (206)
T ss_pred hccccccccccchhHHHHHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhcCCCchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999764433
No 10
>KOG1652|consensus
Probab=99.82 E-value=5.9e-21 Score=165.23 Aligned_cols=78 Identities=59% Similarity=1.022 Sum_probs=75.8
Q ss_pred chhhHHHhhhcccchhhHHHHHHHHhhHhHHHHHHHhccCchhHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHH-H
Q psy13364 4 VGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKVRTL-E 81 (285)
Q Consensus 4 ~~~l~~~~~r~~~~g~~fa~~g~~ys~~e~~~~~~R~k~D~~N~~~aG~~tGa~l~~~~G~~~~~~~a~~gg~~~~~-e 81 (285)
+|.++.+++|+|.+|++||+||++||.+||++..+|+|||+||++++|++||++|+.|.|+++++.+|+++|+++++ |
T Consensus 47 ~gg~~av~~~ap~~ggsFAvwgglfSt~dC~Lv~~R~KeDpwNsivsGa~TGg~La~r~g~~a~~~sa~~~g~~lamie 125 (183)
T KOG1652|consen 47 VGGISAVKMRAPQSGGSFAVWGGLFSTVDCALVAIRKKEDPWNSIVSGAATGGLLAARGGPKAMLTSAITGGLLLAMIE 125 (183)
T ss_pred ccchhhhhccCcccccceeeeechhhHHHHHHHHHhcccchHHHHHHHhhccceeeccccHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999988 6
No 11
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=99.78 E-value=4e-19 Score=151.69 Aligned_cols=76 Identities=21% Similarity=0.447 Sum_probs=73.4
Q ss_pred hhhHHHhhhcccchhhHHHHHHHHhhHhHHHHHHHhccCchhHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHH
Q psy13364 5 GMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKVRTL 80 (285)
Q Consensus 5 ~~l~~~~~r~~~~g~~fa~~g~~ys~~e~~~~~~R~k~D~~N~~~aG~~tGa~l~~~~G~~~~~~~a~~gg~~~~~ 80 (285)
+++|++++|++++|++||+||++|+++||.++++|+|||+||+++||++||++++.++||++++.+|+++++++++
T Consensus 73 ~~ln~~~~~g~~~G~~~g~~g~lys~~e~~i~~~R~k~D~~Nsv~AGa~TGal~~~~~G~r~~~~g~~~G~~l~~~ 148 (149)
T TIGR00983 73 QILNMVTRRGPFWGNTLGILALVYNGINSIIEATRGKHDDFNSVAAGALTGALYKSTRGLRGMARSGALGATAAGV 148 (149)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHhccChHHHHHHhHHHHHHhhc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999998753
No 12
>KOG3225|consensus
Probab=99.66 E-value=2.3e-17 Score=140.38 Aligned_cols=76 Identities=32% Similarity=0.409 Sum_probs=72.2
Q ss_pred hhhHHHhhhcccchhhHHHHHHHHhhHhHHHHHHHhccCchhHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHH
Q psy13364 5 GMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKVRTL 80 (285)
Q Consensus 5 ~~l~~~~~r~~~~g~~fa~~g~~ys~~e~~~~~~R~k~D~~N~~~aG~~tGa~l~~~~G~~~~~~~a~~gg~~~~~ 80 (285)
++.++|..|+.+++++|+++|++|+++||++|++|.|+||+|++++||+||+.++.|+||++++.+|...++++++
T Consensus 84 q~~kdMg~r~~s~~knF~~iGlvfsg~Ec~iE~~RAK~D~~NgaiaG~vtGg~l~~raGp~a~~~G~agfa~fS~~ 159 (168)
T KOG3225|consen 84 QVAKDMGQRSGSYAKNFAIIGLVFSGVECLIESFRAKSDWYNGAIAGCVTGGSLGYRAGPKAAAIGCAGFAAFSAA 159 (168)
T ss_pred HHHHHHHhhhcchhhhhhhhhhhehhHHHHHHHHHhhhchhcceeeeeeeccchhhcccchhhhhchhHHHHHHHH
Confidence 3459999999999999999999999999999999999999999999999999999999999999999998888877
No 13
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=99.65 E-value=4.1e-16 Score=128.44 Aligned_cols=81 Identities=33% Similarity=0.644 Sum_probs=75.4
Q ss_pred chhhHHHhhhcccchhhHHHHHHHHhhHhHHHHHHHhccCchhHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHH-HH
Q psy13364 4 VGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKVRTL-EL 82 (285)
Q Consensus 4 ~~~l~~~~~r~~~~g~~fa~~g~~ys~~e~~~~~~R~k~D~~N~~~aG~~tGa~l~~~~G~~~~~~~a~~gg~~~~~-e~ 82 (285)
..+++.++++++.++.+||.++++|+++||.++++|+|||+||++++|++||++++.+.|++.++.++++++++.++ |+
T Consensus 44 ~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~k~D~~N~~~aG~~aGa~~~~~~g~~~~~~~~~~~a~~~~~~~~ 123 (128)
T PF02466_consen 44 RSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRGKDDPWNSAIAGAAAGAVLGLRSGPRGMASGAALGAAFAAAVEY 123 (128)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH
Confidence 36788888899999999999999999999999999999999999999999999999999999999999999999877 74
Q ss_pred hh
Q psy13364 83 VL 84 (285)
Q Consensus 83 ~~ 84 (285)
.+
T Consensus 124 ~~ 125 (128)
T PF02466_consen 124 YG 125 (128)
T ss_pred Hh
Confidence 43
No 14
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=3.7e-16 Score=136.12 Aligned_cols=144 Identities=21% Similarity=0.248 Sum_probs=110.9
Q ss_pred cccCccccCCCCChHH--HHHHh---hcCCCcchhhhhcchhhHHHHHHHHHHHhhh------------------ccccC
Q psy13364 138 VNYGENLVHVEATPEV--ELEEY---AREPCPWRIVDDCGGAFTMGLIGGALFHGIK------------------GFRNA 194 (285)
Q Consensus 138 lN~d~~l~~~~~~~e~--~~~d~---~~e~C~~r~~~s~g~G~~~G~~~Gg~~~~~~------------------G~r~~ 194 (285)
-|.+.+++.++.+|-. ...+. ..+.|+.+.+.+...||.+|...|.....+. |+.+.
T Consensus 16 ~~~~~~lS~~e~d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~ 95 (191)
T COG5596 16 PNAYNILSPEERDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGLFST 95 (191)
T ss_pred CCcccccChhhcCchhhhHHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccceeec
Confidence 4555566555444422 22222 2257888888888888888776643322221 11111
Q ss_pred C--cchhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhHHhHHHHHhhcCCchhHHHHHHHHhhhhcccCChHHHH-HHHH
Q psy13364 195 P--SGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMA-GSAL 271 (285)
Q Consensus 195 p--~~~k~r~~~~l~~~~~r~~~~g~~fa~iG~~ys~~ec~le~~RgkdD~~Nsv~AG~~TGa~l~~~~G~~a~~-g~a~ 271 (285)
. .+.|+|++.+++.+.+|++.+|++||++|.+|.+.||.++.+|+|||+.|++.+|..||+.++.+.|++++. +.++
T Consensus 96 i~~~~~r~q~~~~~~n~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g~qa~~~~~a~ 175 (191)
T COG5596 96 IDCTPFRLQLKEQLNNAGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAGPQAMPMGGAG 175 (191)
T ss_pred cccchHHHHHhhccccccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhccccccccCccc
Confidence 1 135789999999999999999999999999999999999999999999999999999999999999999975 7799
Q ss_pred HHHHHHHHhh
Q psy13364 272 IGGKLKRLDF 281 (285)
Q Consensus 272 ~aAfs~aid~ 281 (285)
++|++..++.
T Consensus 176 ~aa~s~~~~~ 185 (191)
T COG5596 176 FAAFSAGITL 185 (191)
T ss_pred hhhhhhhHHh
Confidence 9999998875
No 15
>KOG3324|consensus
Probab=99.53 E-value=1.6e-14 Score=126.95 Aligned_cols=76 Identities=22% Similarity=0.422 Sum_probs=73.8
Q ss_pred hhhHHHhhhcccchhhHHHHHHHHhhHhHHHHHHHhccCchhHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHH
Q psy13364 5 GMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKVRTL 80 (285)
Q Consensus 5 ~~l~~~~~r~~~~g~~fa~~g~~ys~~e~~~~~~R~k~D~~N~~~aG~~tGa~l~~~~G~~~~~~~a~~gg~~~~~ 80 (285)
.+||++++|++..+++.++++.+|+.+|+.+++.|+|||++|+++||++||+++....|+|++.+++++++.++++
T Consensus 116 rILN~~t~~G~~~gN~lG~laL~YsaiesgI~~~R~~dd~lnsv~AGalTGalyrs~~Glr~~av~ga~g~~aa~a 191 (206)
T KOG3324|consen 116 RILNSVTRRGRFWGNTLGSLALMYSAIESGIEATRGKDDDLNSVAAGALTGALYRSTRGLRAAAVAGAVGGTAAAA 191 (206)
T ss_pred HHhhhccccccccccchhHHHHHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999888866
No 16
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=9.3e-12 Score=108.78 Aligned_cols=76 Identities=24% Similarity=0.253 Sum_probs=71.4
Q ss_pred hhhHHHhhhcccchhhHHHHHHHHhhHhHHHHHHHhccCchhHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHH
Q psy13364 5 GMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKVRTL 80 (285)
Q Consensus 5 ~~l~~~~~r~~~~g~~fa~~g~~ys~~e~~~~~~R~k~D~~N~~~aG~~tGa~l~~~~G~~~~~~~a~~gg~~~~~ 80 (285)
.+++++..|++++|+++|+.|.+|++.||+++.+|+|||+.|++.+|..||+.++.+.|+|++..+.+..+++++.
T Consensus 107 ~~~~n~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g~qa~~~~~a~~aa~s~~ 182 (191)
T COG5596 107 EQLNNAGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAGPQAMPMGGAGFAAFSAG 182 (191)
T ss_pred hccccccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhccccccccCccchhhhhhh
Confidence 4678899999999999999999999999999999999999999999999999999999999999988887777755
No 17
>KOG4608|consensus
Probab=96.90 E-value=0.00021 Score=65.36 Aligned_cols=62 Identities=19% Similarity=0.228 Sum_probs=52.6
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHhHHhHHHHHhhcCCchhHHHHHHHHhhhhcccCChHHH
Q psy13364 205 MTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAM 266 (285)
Q Consensus 205 ~l~~~~~r~~~~g~~fa~iG~~ys~~ec~le~~RgkdD~~Nsv~AG~~TGa~l~~~~G~~a~ 266 (285)
..+.+.+-+...|-..|.+...|-++...+.-+|+|||.||-++||.+||++++..-|++-+
T Consensus 123 air~farGgf~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~gL~g~ 184 (270)
T KOG4608|consen 123 AIRGFARGGFRWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVGLRGL 184 (270)
T ss_pred HHHHHhhccccceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehhhHHH
Confidence 33435555667777888899999999999999999999999999999999999998887653
No 18
>KOG4096|consensus
Probab=96.37 E-value=0.0023 Score=48.27 Aligned_cols=70 Identities=29% Similarity=0.386 Sum_probs=57.8
Q ss_pred hcCCCcchhhhhcchhhHHHHHHHHHHHhhhccccCCcchhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhHHhH
Q psy13364 159 AREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCS 233 (285)
Q Consensus 159 ~~e~C~~r~~~s~g~G~~~G~~~Gg~~~~~~G~r~~p~~~k~r~~~~l~~~~~r~~~~g~~fa~iG~~ys~~ec~ 233 (285)
.+++|..|+-+.+..|..+|...|.+|+.++.+|..|.+ ++.++.+.+-....+.+|+.+-++=+.+.|.
T Consensus 3 ~qpSc~dKikmG~~mG~avG~a~G~lfGgf~~lR~g~~g-----~~~vr~iGkt~~~SagtFG~FM~igs~Ir~~ 72 (75)
T KOG4096|consen 3 QQPSCFDKIKMGLMMGGAVGGATGALFGGFAALRYGPRG-----RGLVRTIGKTMLQSAGTFGLFMGIGSGIRCG 72 (75)
T ss_pred CCccHHHHHHHHHHHHhhhhhhhhhhccchhheeecCCh-----hHHHHHHhHHHHhccchhhhhhhhhhheecC
Confidence 457899999999999999999999999999998876644 4566667777888899999988887777775
No 19
>KOG1398|consensus
Probab=95.48 E-value=0.32 Score=47.88 Aligned_cols=225 Identities=17% Similarity=0.212 Sum_probs=113.8
Q ss_pred HHHHHHHHhhHhHHHHHHHhccCchhHHHHHHHhhhh---hhccCChhHH--HHHHHHHHHHHHH---HHhhhcCCCCCC
Q psy13364 21 FAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGI---LAARNGVPAM--AGSALIGGKVRTL---ELVLLFEPAPNQ 92 (285)
Q Consensus 21 fa~~g~~ys~~e~~~~~~R~k~D~~N~~~aG~~tGa~---l~~~~G~~~~--~~~a~~gg~~~~~---e~~~~~~~~p~~ 92 (285)
+.--.+.|-...|.+.+.++|.-+||+..+|++.+.- |--|.-.++. +.-+= .+.-+.. +.+-+...-|..
T Consensus 85 lvtn~~~f~al~C~lRkwlgkftp~t~glv~s~las~iaiLvErksRRplltlylan-lA~e~~~~~a~~hgwvr~~~~G 163 (460)
T KOG1398|consen 85 LVTNTGSFHALRCCLRKWLGKFTPLTSGLVGSVLASSIAILVERKSRRPLLTLYLAN-LAYESAKSKAKFHGWVRHWRHG 163 (460)
T ss_pred eeechHHHHHHHHHHHHHhcccCcccHHHHHHHHhhhhhhhhccccccchHHHHHHH-HHHHHHHHHHHhceeeEecCCC
Confidence 3344567888899999999999999999999988733 3333322222 21111 1111111 122234445555
Q ss_pred CcchhhhhhcccchhhhhhhcCCccceeeeccccccccCCccccccccCccccCCCCC-----------hH--H-HHHHh
Q psy13364 93 GTSIISFYNFLTYRYRWIYLRGHRPLTYGYNKSKELRSSPVMERYVNYGENLVHVEAT-----------PE--V-ELEEY 158 (285)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YlN~d~~l~~~~~~-----------~e--~-~~~d~ 158 (285)
+.=+-++- ---.+|||..|. .++=-||.--..--...-.+|+..++..+..... .+ + .-+++
T Consensus 164 ~~llfg~~---~aal~yi~~~g~-tlpksFn~f~~~agke~~~e~~~~~~~ekg~p~n~~~~~~f~~vr~fv~~~~~~~~ 239 (460)
T KOG1398|consen 164 DSLLFGLA---CAALMYIFIMGP-TLPKSFNEFIQKAGKEARPEYQAVRECEKGGPINVASLSAFISVRNFVSDVKVEEF 239 (460)
T ss_pred CchhhhHH---HHHHHHHHhcCC-CCCccchHHHHHhcccccCchhhcccccCCCCCCcchhhHHHHHHHHHHHHHhhhc
Confidence 43332221 234678887776 3443344221111112233565554444432222 01 1 12232
Q ss_pred hc-CCCcchhhhhcchhhHHHHHHHHHHHhhhcc------ccCCcc---hhh--hhhHHHHHHhhhhhhhhHHHHHHHHH
Q psy13364 159 AR-EPCPWRIVDDCGGAFTMGLIGGALFHGIKGF------RNAPSG---MNR--RFLGMTTTIKQKSPILAGNFAVWGAM 226 (285)
Q Consensus 159 ~~-e~C~~r~~~s~g~G~~~G~~~Gg~~~~~~G~------r~~p~~---~k~--r~~~~l~~~~~r~~~~g~~fa~iG~~ 226 (285)
.+ |+|. ++-+.|.+=-+.|.+ -.|..|+ +-.|.. .++ ++...+ .-+..-+.+.=.+.+-++
T Consensus 240 akhe~C~-h~hsnCisys~~gfi----k~f~~g~~lq~~Lt~v~nvr~i~~~pm~l~sll--~nrenlqlg~FlgsfvfI 312 (460)
T KOG1398|consen 240 AKHEPCA-HIHSNCISYSANGFI----KTFKKGFPLQFSLTFVPNVRLILQKPMALTSLL--ANRENLQLGSFLGSFVFI 312 (460)
T ss_pred ccccccc-CCCchHHHHHHHHhH----hhcccceeeEEEEEecHHHHHHhcCchhhhhHh--hccccchhhHHHHHHHHH
Confidence 22 4553 333333222222222 2222222 111110 001 111111 112233556667889999
Q ss_pred HHhHHhHHHHHhhcCCchhHHHHHHHHhhhh
Q psy13364 227 FSTIDCSLVYVRKKEDPWNSIISGAATGGIL 257 (285)
Q Consensus 227 ys~~ec~le~~RgkdD~~Nsv~AG~~TGa~l 257 (285)
|-++.|.+.+++-+||..|++.||.+++.-+
T Consensus 313 fkatsC~lr~v~n~dd~l~aifAgglAs~Sm 343 (460)
T KOG1398|consen 313 FKATSCALRKVANKDDKLVAIFAGGLASLSM 343 (460)
T ss_pred HHhHHHHHHHhccCcHHHHHHHHhhhhhhee
Confidence 9999999999999999999999999988543
No 20
>KOG4608|consensus
Probab=95.47 E-value=0.0031 Score=57.80 Aligned_cols=67 Identities=21% Similarity=0.294 Sum_probs=54.4
Q ss_pred hhcccchhhHHHHHHHHhhHhHHHHHHHhccCchhHHHHHHHhhhhhhccCChhHHHHHHHHHHHHH
Q psy13364 12 QKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKVR 78 (285)
Q Consensus 12 ~r~~~~g~~fa~~g~~ys~~e~~~~~~R~k~D~~N~~~aG~~tGa~l~~~~G~~~~~~~a~~gg~~~ 78 (285)
+-+-..|=..|++-+.|-+....+.-+|+|+|.||=+++|.+||+++...-|.+-.+.+.++|+++-
T Consensus 129 rGgf~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~gL~g~aa~vilG~~lG 195 (270)
T KOG4608|consen 129 RGGFRWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVGLRGLAAGVILGALLG 195 (270)
T ss_pred hccccceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehhhHHHhhcceeehhhc
Confidence 3345566677889999999999999999999999999999999999999988766665555554443
No 21
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=95.12 E-value=0.023 Score=42.56 Aligned_cols=66 Identities=21% Similarity=0.145 Sum_probs=49.9
Q ss_pred CCCcchhhhhcchhhHHHHHHHHHHHhhhccccCCcchhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhHH
Q psy13364 161 EPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTID 231 (285)
Q Consensus 161 e~C~~r~~~s~g~G~~~G~~~Gg~~~~~~G~r~~p~~~k~r~~~~l~~~~~r~~~~g~~fa~iG~~ys~~e 231 (285)
++|..|+.+....|..+|...|.+++.++.+|.-+. -++.++.+.+..-..+.+|+.+=.+=+.+.
T Consensus 1 psc~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~-----~~~~~~~lg~~~l~sg~tFG~Fm~iGs~IR 66 (67)
T PF10247_consen 1 PSCFDKIKMGFMMGGAVGGAFGALFGTFSAFRYGAR-----GRGLMRTLGKYMLGSGATFGFFMSIGSVIR 66 (67)
T ss_pred CcHHHHHHHHHHHhhHHHhhhhhhhhhHHHhccCCC-----CcchHhHHhHHHhcchhHHHHHHhhhcccc
Confidence 479999999999999999999999999988875432 245667777777788888887655544443
No 22
>KOG1398|consensus
Probab=67.70 E-value=6.1 Score=39.17 Aligned_cols=48 Identities=19% Similarity=0.260 Sum_probs=40.3
Q ss_pred cccchhhHHHHHHHHhhHhHHHHHHHhccCchhHHHHHHHhhhhhhcc
Q psy13364 14 SPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAAR 61 (285)
Q Consensus 14 ~~~~g~~fa~~g~~ys~~e~~~~~~R~k~D~~N~~~aG~~tGa~l~~~ 61 (285)
.-.++.-.+.+-++|..+.|.+.+.+-+||..|+++||.+++--+..-
T Consensus 299 nlqlg~FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~Smmfy 346 (460)
T KOG1398|consen 299 NLQLGSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLSMMFY 346 (460)
T ss_pred cchhhHHHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhheeeec
Confidence 345666778899999999999999999999999999999988444433
No 23
>PF10439 Bacteriocin_IIc: Bacteriocin class II with double-glycine leader peptide; InterPro: IPR019493 Bacteriocins are proteinaceous toxins produced by bacteria to inhibit the growth of similar or closely related strains. The producer bacteria are protected from the effects of their own bacteriocins by production of a specific immunity protein which is co-transcribed with the genes encoding the bacteriocins, e.g. IPR015046 from INTERPRO. The bacteriocins are structurally more specific than their immunity-protein counterparts. Typically, production of the bacteriocin gene is from within an operon carrying up to 6 genes including a typical two-component regulatory system (R and H), a small peptide pheromone (C), and a dedicated ABC transporter (A and -B) as well as an immunity protein []. The ABC transporter is thought to recognise the N termini of both the pheromone and the bacteriocins and to transport these peptides across the cytoplasmic membrane, concurrent with cleavage at the conserved double-glycine motif. Cleaved extracellular C can then bind to the sensor kinase, H, resulting in activation of R and up-regulation of the entire gene cluster via binding to consensus sequences within each promoter []. It seems likely that the whole regulon is carried on a transmissible plasmid which is passed between closely related Firmicute species since many clinical isolates from different Firmicutes can produce at least two bacteriocins, and the same bacteriocins can be produced by different species. The proteins in this entry include amylovorin-L, lactacin-F and salivaricin CRL 1328, all of them class IIb two-peptide bacteriocins.
Probab=33.25 E-value=97 Score=22.58 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=27.3
Q ss_pred hHHHHHHHhc---cCchhHHHHHHHhhhhhhccCCh-hHHHHHHHHHH
Q psy13364 32 DCSLVYVRKK---EDPWNSIISGAATGGILAARNGV-PAMAGSALIGG 75 (285)
Q Consensus 32 e~~~~~~R~k---~D~~N~~~aG~~tGa~l~~~~G~-~~~~~~a~~gg 75 (285)
|.-++++-+= .+.+..+.+++++|++.+...|+ -.++..++.++
T Consensus 10 ~eeL~~I~GG~~~~~~~~~~~~~~~~G~~~G~~~g~~~g~~~Ga~~G~ 57 (65)
T PF10439_consen 10 EEELSSIEGGNSWGNCVGGVGGGAAGGAAAGAAGGPPVGAVAGAIVGA 57 (65)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 3444555444 45566778888899999888886 33344443333
No 24
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=30.38 E-value=60 Score=24.03 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHHHhhhccccCCcchhhhhhHHHHHHh
Q psy13364 173 GAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIK 210 (285)
Q Consensus 173 ~G~~~G~~~Gg~~~~~~G~r~~p~~~k~r~~~~l~~~~ 210 (285)
.|+.+|++.|++.+.+-.++... -.|+++....+.+.
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP~sG~-e~R~~l~~~~~~~~ 39 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAPKSGK-ETREKLKDKAEDLK 39 (74)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcH-HHHHHHHHHHHHHH
Confidence 45666666666655554332211 13445544444443
No 25
>PF10439 Bacteriocin_IIc: Bacteriocin class II with double-glycine leader peptide; InterPro: IPR019493 Bacteriocins are proteinaceous toxins produced by bacteria to inhibit the growth of similar or closely related strains. The producer bacteria are protected from the effects of their own bacteriocins by production of a specific immunity protein which is co-transcribed with the genes encoding the bacteriocins, e.g. IPR015046 from INTERPRO. The bacteriocins are structurally more specific than their immunity-protein counterparts. Typically, production of the bacteriocin gene is from within an operon carrying up to 6 genes including a typical two-component regulatory system (R and H), a small peptide pheromone (C), and a dedicated ABC transporter (A and -B) as well as an immunity protein []. The ABC transporter is thought to recognise the N termini of both the pheromone and the bacteriocins and to transport these peptides across the cytoplasmic membrane, concurrent with cleavage at the conserved double-glycine motif. Cleaved extracellular C can then bind to the sensor kinase, H, resulting in activation of R and up-regulation of the entire gene cluster via binding to consensus sequences within each promoter []. It seems likely that the whole regulon is carried on a transmissible plasmid which is passed between closely related Firmicute species since many clinical isolates from different Firmicutes can produce at least two bacteriocins, and the same bacteriocins can be produced by different species. The proteins in this entry include amylovorin-L, lactacin-F and salivaricin CRL 1328, all of them class IIb two-peptide bacteriocins.
Probab=24.72 E-value=1.7e+02 Score=21.28 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=30.2
Q ss_pred hHHHHHhhc---CCchhHHHHHHHHhhhhcccCChHH-HHHHHHHHHHHHHH
Q psy13364 232 CSLVYVRKK---EDPWNSIISGAATGGILAARNGVPA-MAGSALIGGKLKRL 279 (285)
Q Consensus 232 c~le~~Rgk---dD~~Nsv~AG~~TGa~l~~~~G~~a-~~g~a~~aAfs~ai 279 (285)
.-++++-+= .+.+..+++++++|++.+...|+.. .+.++..++...++
T Consensus 11 eeL~~I~GG~~~~~~~~~~~~~~~~G~~~G~~~g~~~g~~~Ga~~G~~~G~i 62 (65)
T PF10439_consen 11 EELSSIEGGNSWGNCVGGVGGGAAGGAAAGAAGGPPVGAVAGAIVGAAVGAI 62 (65)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhh
Confidence 334444433 4456778888999999998888743 44555555555443
No 26
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=21.58 E-value=2.3e+02 Score=23.40 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHhhhccccCCcchhhhhhHHHHHHhhhhhhhhH
Q psy13364 174 AFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAG 218 (285)
Q Consensus 174 G~~~G~~~Gg~~~~~~G~r~~p~~~k~r~~~~l~~~~~r~~~~g~ 218 (285)
.|..|.+.|++.++..++.-+|... +.++..++....+.+.++.
T Consensus 6 ~~l~G~liGgiiGa~aaLL~AP~sG-kelR~~~K~~~~~~~~~ae 49 (115)
T COG4980 6 DFLFGILIGGIIGAAAALLFAPKSG-KELRKKLKKSGDALFELAE 49 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCccc-HHHHHHHHHHHHHhHHHHH
Confidence 4566666667777666665566532 2233444444433333333
No 27
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=20.95 E-value=1.4e+02 Score=24.44 Aligned_cols=38 Identities=26% Similarity=0.215 Sum_probs=22.1
Q ss_pred CchhHHHHHHHhhhhhhccCC--hhHHHHHHHHHHHHHHH
Q psy13364 43 DPWNSIISGAATGGILAARNG--VPAMAGSALIGGKVRTL 80 (285)
Q Consensus 43 D~~N~~~aG~~tGa~l~~~~G--~~~~~~~a~~gg~~~~~ 80 (285)
+.....+.|.+.|++++.-.| .+.+++++++|+++-++
T Consensus 51 ~~~~ga~~GA~~GA~~Ga~~G~~~~ga~~GAa~Ga~~G~~ 90 (118)
T PF13436_consen 51 NTAGGAAIGAAAGAAIGAIIGGNGRGAAIGAAAGAAVGAA 90 (118)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHH
Confidence 333445566666777776544 35566666666665444
No 28
>COG3558 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.18 E-value=48 Score=27.95 Aligned_cols=19 Identities=37% Similarity=0.538 Sum_probs=16.4
Q ss_pred HHhHHHHHhhcCCchhHHH
Q psy13364 230 IDCSLVYVRKKEDPWNSII 248 (285)
Q Consensus 230 ~ec~le~~RgkdD~~Nsv~ 248 (285)
.|.+++|+|-.+|.||+-=
T Consensus 11 ~eta~~kvr~aed~wnsrd 29 (154)
T COG3558 11 AETAIQKVRMAEDAWNSRD 29 (154)
T ss_pred HHHHHHHHHHhHhccccCC
Confidence 4889999999999999743
Done!