Query psy13364
Match_columns 285
No_of_seqs 247 out of 979
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 17:36:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13364.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13364hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2imj_A Hypothetical protein DU 16.9 28 0.00097 29.1 -0.0 17 230-246 16-32 (166)
2 2imj_A Hypothetical protein DU 12.4 54 0.0018 27.4 0.4 19 31-49 16-34 (166)
3 4i16_A Caspase recruitment dom 11.6 53 0.0018 25.0 0.1 20 93-112 68-87 (93)
4 3nva_A CTP synthase; rossman f 10.4 67 0.0023 31.8 0.5 14 132-145 39-52 (535)
5 2vo1_A CTP synthase 1; pyrimid 10.1 68 0.0023 29.4 0.3 17 132-148 59-75 (295)
6 2c5m_A CTP synthase; cytidine 10.0 73 0.0025 29.1 0.5 18 131-148 58-75 (294)
7 2elu_A Zinc finger protein 406 9.3 1.2E+02 0.004 18.9 1.1 18 28-45 19-36 (37)
8 1tme_1 Theiler'S murine enceph 7.3 1.6E+02 0.0054 26.6 1.6 50 85-138 22-74 (274)
9 2b2h_A AMT-1, ammonium transpo 6.8 1E+03 0.036 22.2 7.1 47 34-80 236-285 (399)
10 1unq_A RAC-alpha serine/threon 6.5 1.2E+02 0.0042 22.4 0.3 21 104-125 23-43 (125)
No 1
>2imj_A Hypothetical protein DUF1348; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} SCOP: d.17.4.23
Probab=16.90 E-value=28 Score=29.07 Aligned_cols=17 Identities=35% Similarity=0.638 Sum_probs=15.4
Q ss_pred HHhHHHHHhhcCCchhH
Q psy13364 230 IDCSLVYVRKKEDPWNS 246 (285)
Q Consensus 230 ~ec~le~~RgkdD~~Ns 246 (285)
.|.+++|+|..+|.||+
T Consensus 16 ~EtA~~KVr~AEDaWNs 32 (166)
T 2imj_A 16 RESAIEKIRLAEDGWNS 32 (166)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 48899999999999997
No 2
>2imj_A Hypothetical protein DUF1348; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} SCOP: d.17.4.23
Probab=12.35 E-value=54 Score=27.41 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=16.6
Q ss_pred HhHHHHHHHhccCchhHHH
Q psy13364 31 IDCSLVYVRKKEDPWNSII 49 (285)
Q Consensus 31 ~e~~~~~~R~k~D~~N~~~ 49 (285)
.|.+++++|-.+|.||+==
T Consensus 16 ~EtA~~KVr~AEDaWNsrd 34 (166)
T 2imj_A 16 RESAIEKIRLAEDGWNSRD 34 (166)
T ss_dssp HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhhhcccC
Confidence 4889999999999999853
No 3
>4i16_A Caspase recruitment domain-containing protein 11; CBM complex, helix bundle, scaffold protein, BCL10 and MALT1 phosphorylation, signaling protein; 1.75A {Mus musculus}
Probab=11.59 E-value=53 Score=25.03 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=17.3
Q ss_pred Ccchhhhhhcccchhhhhhh
Q psy13364 93 GTSIISFYNFLTYRYRWIYL 112 (285)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~ 112 (285)
..+|++|+|-|.-.|.|+|-
T Consensus 68 ~~a~~aFlesL~~~yp~L~~ 87 (93)
T 4i16_A 68 QRGYVVFLESLEFYYPELYK 87 (93)
T ss_dssp HHHHHHHHHHHHHHCHHHHH
T ss_pred chHHHHHHHHHHHHCHHHHH
Confidence 56899999999888999983
No 4
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=10.43 E-value=67 Score=31.82 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=10.8
Q ss_pred CccccccccCcccc
Q psy13364 132 PVMERYVNYGENLV 145 (285)
Q Consensus 132 ~~~~~YlN~d~~l~ 145 (285)
.-+|||||.|+---
T Consensus 39 ~k~dpylnvd~gtm 52 (535)
T 3nva_A 39 VKIDPYINVDAGTM 52 (535)
T ss_dssp EEEECSSSSSSTTC
T ss_pred EecCcceeecCCCC
Confidence 45799999998654
No 5
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=10.06 E-value=68 Score=29.36 Aligned_cols=17 Identities=12% Similarity=0.171 Sum_probs=8.5
Q ss_pred CccccccccCccccCCC
Q psy13364 132 PVMERYVNYGENLVHVE 148 (285)
Q Consensus 132 ~~~~~YlN~d~~l~~~~ 148 (285)
.-+|||||.|+---+|-
T Consensus 59 ~K~DPYlNvD~GTMsP~ 75 (295)
T 2vo1_A 59 IKIDPYINIDAGTFSPY 75 (295)
T ss_dssp EEEECSSCCC-------
T ss_pred eecccceecCCCCCChh
Confidence 45799999998765443
No 6
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=10.00 E-value=73 Score=29.06 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=10.1
Q ss_pred CCccccccccCccccCCC
Q psy13364 131 SPVMERYVNYGENLVHVE 148 (285)
Q Consensus 131 ~~~~~~YlN~d~~l~~~~ 148 (285)
..-+|||||.|+---+|-
T Consensus 58 ~~KiDPYlNvD~GTMsP~ 75 (294)
T 2c5m_A 58 SIKIDPYINIDAGTFSPY 75 (294)
T ss_dssp CCEEECBCCCCC------
T ss_pred EEecCCceeecCCCCCcc
Confidence 456899999998765443
No 7
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=9.31 E-value=1.2e+02 Score=18.88 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=14.8
Q ss_pred HhhHhHHHHHHHhccCch
Q psy13364 28 FSTIDCSLVYVRKKEDPW 45 (285)
Q Consensus 28 ys~~e~~~~~~R~k~D~~ 45 (285)
||-+...+..+|..||+.
T Consensus 19 ysdvknlikhire~hd~~ 36 (37)
T 2elu_A 19 YSDVKNLIKHIRDAHDPQ 36 (37)
T ss_dssp CSSHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 666778899999999974
No 8
>1tme_1 Theiler'S murine encephalomyelitis virus (subunit VP1); icosahedral virus; 2.80A {Theiler} SCOP: b.121.4.1 PDB: 1tmf_1
Probab=7.30 E-value=1.6e+02 Score=26.56 Aligned_cols=50 Identities=16% Similarity=0.088 Sum_probs=30.5
Q ss_pred hcCCCCCCCcchhhhhhcccchhhhhhh---cCCccceeeeccccccccCCcccccc
Q psy13364 85 LFEPAPNQGTSIISFYNFLTYRYRWIYL---RGHRPLTYGYNKSKELRSSPVMERYV 138 (285)
Q Consensus 85 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Yl 138 (285)
+..+.|++++.+..|+ -|||+|-+ ..-.+..+-++++.....+++++|.-
T Consensus 22 ~~v~~~~~~T~vefF~----dR~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~LtP~p 74 (274)
T 1tme_1 22 EPVKLPENQTRVAFFY----DRAVPIGMLRPGQNIESTFVYQENDLRLNCLLLTPLP 74 (274)
T ss_dssp CCCCCCCCTTBHHHHH----CSCEEEEEECCSSCTTSCCCCCEETTEESEEECCSSC
T ss_pred ccccCCCCcchHHhhh----hhheeeEEeecccccCCcccccccccccceecccccc
Confidence 4556778889998888 68888773 33334444455444444455555543
No 9
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=6.79 E-value=1e+03 Score=22.17 Aligned_cols=47 Identities=21% Similarity=0.163 Sum_probs=25.6
Q ss_pred HHHHHHhccCc---hhHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHH
Q psy13364 34 SLVYVRKKEDP---WNSIISGAATGGILAARNGVPAMAGSALIGGKVRTL 80 (285)
Q Consensus 34 ~~~~~R~k~D~---~N~~~aG~~tGa~l~~~~G~~~~~~~a~~gg~~~~~ 80 (285)
.++.+|+|-|. .|.++||.++=.--..--.|-.++.-++++|++...
T Consensus 236 ~~~~~~gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~ 285 (399)
T 2b2h_A 236 VIGWIKGKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYL 285 (399)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHH
Confidence 45666666665 455555555321111113466666667777777655
No 10
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=6.55 E-value=1.2e+02 Score=22.39 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=15.7
Q ss_pred cchhhhhhhcCCccceeeeccc
Q psy13364 104 TYRYRWIYLRGHRPLTYGYNKS 125 (285)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~ 125 (285)
+.+-||..|+++..|.| |...
T Consensus 23 ~WkkRwfvL~~~~~L~y-y~~~ 43 (125)
T 1unq_A 23 TWRPRYFLLKNDGTFIG-YKER 43 (125)
T ss_dssp CEEEEEEEEETTSEEEE-ESSC
T ss_pred CccCcEEEEecCCEEEE-EeCC
Confidence 45679999998878887 5433
Done!