Query psy13364
Match_columns 285
No_of_seqs 247 out of 979
Neff 5.8
Searched_HMMs 13730
Date Fri Aug 16 17:36:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13364.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13364hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j07a1 a.99.1.1 (A:172-405) C 16.7 8.3 0.0006 31.0 -1.4 47 88-144 4-51 (234)
2 d1s1ma2 c.37.1.10 (A:1-266) CT 15.6 17 0.0013 30.7 0.4 15 133-147 40-54 (266)
3 d2imja1 d.17.4.23 (A:5-159) Hy 15.0 16 0.0012 28.3 -0.0 17 230-246 12-28 (155)
4 d1vcoa2 c.37.1.10 (A:11-282) C 13.9 21 0.0015 30.3 0.4 17 132-148 38-54 (272)
5 d2vo1a1 c.37.1.10 (A:1-273) CT 9.6 34 0.0025 28.9 0.3 17 132-148 37-53 (273)
6 d1u7ga_ f.44.1.1 (A:) Ammonium 8.9 4.8E+02 0.035 21.9 8.1 47 39-85 251-302 (383)
7 d2e74d2 f.23.12.1 (D:12-45) IS 8.8 1.8E+02 0.013 16.4 3.4 18 72-89 15-34 (34)
8 d1ikpa2 d.166.1.1 (A:395-606) 8.8 25 0.0018 27.6 -0.8 25 103-127 68-92 (212)
9 d1droa_ b.55.1.1 (A:) beta-spe 7.4 56 0.0041 22.3 0.7 35 106-140 33-67 (122)
10 d1bwva2 d.58.9.1 (A:7-149) Rib 7.2 81 0.0059 23.9 1.6 39 113-156 12-50 (144)
No 1
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase {Thermus thermophilus [TaxId: 274]}
Probab=16.66 E-value=8.3 Score=31.01 Aligned_cols=47 Identities=15% Similarity=0.359 Sum_probs=27.8
Q ss_pred CCCCCCcchhhhhhcccchhhhhhhcCCccceeeecccc-ccccCCccccccccCccc
Q psy13364 88 PAPNQGTSIISFYNFLTYRYRWIYLRGHRPLTYGYNKSK-ELRSSPVMERYVNYGENL 144 (285)
Q Consensus 88 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~YlN~d~~l 144 (285)
|+|-..++.--..+||.-+-. .|.-.++. ...++-.+||||+++...
T Consensus 4 p~pGe~~Al~~L~~Fl~~~l~----------~Y~~~Rn~p~~~~tS~LSPyL~~G~LS 51 (234)
T d2j07a1 4 PEPGEEAALAGLRAFLEAKLP----------RYAEERDRLDGEGGSRLSPYFALGVLS 51 (234)
T ss_dssp CCCSHHHHHHHHHHHHHHTGG----------GHHHHTTCTTCTTSCCCHHHHHTTSSC
T ss_pred CCccHHHHHHHHHHHHHHHHH----------HHhHhcCCCCCCCCcccCHHHccCCCc
Confidence 334446778888888875432 23222222 122456899999999754
No 2
>d1s1ma2 c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=15.58 E-value=17 Score=30.70 Aligned_cols=15 Identities=13% Similarity=0.330 Sum_probs=11.5
Q ss_pred ccccccccCccccCC
Q psy13364 133 VMERYVNYGENLVHV 147 (285)
Q Consensus 133 ~~~~YlN~d~~l~~~ 147 (285)
-+|||||.|+---+|
T Consensus 40 K~DPYlNvD~GtmsP 54 (266)
T d1s1ma2 40 KLDPYINVDPGTMSP 54 (266)
T ss_dssp EEECCSCSCGGGSCT
T ss_pred ecccceecCCCCCCc
Confidence 469999999876543
No 3
>d2imja1 d.17.4.23 (A:5-159) Hypothetical protein PFL3262 {Pseudomonas fluorescens [TaxId: 294]}
Probab=14.96 E-value=16 Score=28.33 Aligned_cols=17 Identities=35% Similarity=0.638 Sum_probs=15.5
Q ss_pred HHhHHHHHhhcCCchhH
Q psy13364 230 IDCSLVYVRKKEDPWNS 246 (285)
Q Consensus 230 ~ec~le~~RgkdD~~Ns 246 (285)
.|.+++|+|..+|.||+
T Consensus 12 ~etA~~KVr~AEdaWNs 28 (155)
T d2imja1 12 RESAIEKIRLAEDGWNS 28 (155)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 47899999999999997
No 4
>d1vcoa2 c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=13.88 E-value=21 Score=30.30 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=12.8
Q ss_pred CccccccccCccccCCC
Q psy13364 132 PVMERYVNYGENLVHVE 148 (285)
Q Consensus 132 ~~~~~YlN~d~~l~~~~ 148 (285)
.-+|||||.|+---+|-
T Consensus 38 ~K~DpYlNvD~Gtm~P~ 54 (272)
T d1vcoa2 38 IKIDPYVNVDAGTMRPY 54 (272)
T ss_dssp EEEECSSCSSGGGSCSS
T ss_pred EeeccceecCCCCCCch
Confidence 34799999998766543
No 5
>d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.61 E-value=34 Score=28.91 Aligned_cols=17 Identities=12% Similarity=0.171 Sum_probs=8.4
Q ss_pred CccccccccCccccCCC
Q psy13364 132 PVMERYVNYGENLVHVE 148 (285)
Q Consensus 132 ~~~~~YlN~d~~l~~~~ 148 (285)
.-+|||||.|+---+|-
T Consensus 37 ~K~DPYlNvD~GtmsP~ 53 (273)
T d2vo1a1 37 IKIDPYINIDAGTFSPY 53 (273)
T ss_dssp EEEECSSCCC-------
T ss_pred EecccceecCCCCCCHH
Confidence 34799999998765543
No 6
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=8.85 E-value=4.8e+02 Score=21.90 Aligned_cols=47 Identities=13% Similarity=0.039 Sum_probs=25.4
Q ss_pred HhccCch---hHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHH--HHhhh
Q psy13364 39 RKKEDPW---NSIISGAATGGILAARNGVPAMAGSALIGGKVRTL--ELVLL 85 (285)
Q Consensus 39 R~k~D~~---N~~~aG~~tGa~l~~~~G~~~~~~~a~~gg~~~~~--e~~~~ 85 (285)
++|-|.. |++++|.++-..-..--.|-.++.-++++|.+... ++.|+
T Consensus 251 ~~k~~~~~~~nG~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~ 302 (383)
T d1u7ga_ 251 RGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKR 302 (383)
T ss_dssp HSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHh
Confidence 3455554 77777766543222223466555556666666644 54443
No 7
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=8.80 E-value=1.8e+02 Score=16.36 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=10.6
Q ss_pred HHHHHHHHH--HHhhhcCCC
Q psy13364 72 LIGGKVRTL--ELVLLFEPA 89 (285)
Q Consensus 72 ~~gg~~~~~--e~~~~~~~~ 89 (285)
.+.|+++++ .+.|+|-||
T Consensus 15 t~tg~alg~lypvvkyfipp 34 (34)
T d2e74d2 15 TVTGVALGALYPLVKYFIPP 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHhhhhhHHhhcCCC
Confidence 334444444 577888775
No 8
>d1ikpa2 d.166.1.1 (A:395-606) Exotoxin A, C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.79 E-value=25 Score=27.64 Aligned_cols=25 Identities=36% Similarity=0.736 Sum_probs=21.5
Q ss_pred ccchhhhhhhcCCccceeeeccccc
Q psy13364 103 LTYRYRWIYLRGHRPLTYGYNKSKE 127 (285)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (285)
+...+|=+|+-+|-.|.|||-++||
T Consensus 68 ~~~~W~G~YiA~~~~~A~GYA~~~E 92 (212)
T d1ikpa2 68 LDAIWRGFYIAGDPALAYGYAQDQE 92 (212)
T ss_dssp SCGGGCSEEEBSSHHHHHTTSBCSS
T ss_pred hHHHhCceeecCCHHHhcchhhccC
Confidence 3445677999999999999999998
No 9
>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=7.36 E-value=56 Score=22.27 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=19.3
Q ss_pred hhhhhhhcCCccceeeeccccccccCCcccccccc
Q psy13364 106 RYRWIYLRGHRPLTYGYNKSKELRSSPVMERYVNY 140 (285)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YlN~ 140 (285)
+=||..|+++.=+.|-.-+++..+....++++-.+
T Consensus 33 ~kr~~vL~~~~L~yy~~~~~~~~~~~~~~~~~~~v 67 (122)
T d1droa_ 33 DKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSY 67 (122)
T ss_dssp EEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBC
T ss_pred eEEEEEEeCCEEEEEcCcccccccCcccccccceE
Confidence 34899999887555533334444444444454433
No 10
>d1bwva2 d.58.9.1 (A:7-149) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Probab=7.21 E-value=81 Score=23.94 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=25.2
Q ss_pred cCCccceeeeccccccccCCccccccccCccccCCCCChHHHHH
Q psy13364 113 RGHRPLTYGYNKSKELRSSPVMERYVNYGENLVHVEATPEVELE 156 (285)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~YlN~d~~l~~~~~~~e~~~~ 156 (285)
..+++||| |+.+-+-+...++--|- .-|.+..++|+...
T Consensus 12 ~~y~~~~y-~~p~y~~kdtDila~fr----vtPq~Gv~~eeAaa 50 (144)
T d1bwva2 12 IPYAKMGY-WNPDYQVKDTDVLALFR----VTPQPGVDPIEAAA 50 (144)
T ss_dssp CCTCCCCC-BCTTCCCCTTCEEEEEE----EEECTTCCHHHHHH
T ss_pred eechhccc-cCCCCcccCceeEEEEE----ecCCCCCCHHHhhh
Confidence 34568999 99988865555554443 44556677887543
Done!