RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13364
         (285 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 44.3 bits (104), Expect = 3e-05
 Identities = 53/356 (14%), Positives = 102/356 (28%), Gaps = 145/356 (40%)

Query: 1   MPPVGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAAT--GGIL 58
            P +G+     Q    LA ++ V           L+     E    S + GA     G++
Sbjct: 238 CPLIGVI----Q----LA-HYVV--------TAKLLGFTPGE--LRSYLKGATGHSQGLV 278

Query: 59  AARNGVPAMAGS--ALIGGKVRTLELVLLFEPAPNQGTSIISFYNFLTYRYRWIYLRGHR 116
            A     A   S  +      + + +  LF                      +I +R + 
Sbjct: 279 TAV--AIAETDSWESFFVSVRKAITV--LF----------------------FIGVRCYE 312

Query: 117 PLTYGYNKSKELRSSPVMERYVNYGEN----LVHVEATPEVELEEYARE-----PCPWRI 167
              Y    +  L  S ++E  +   E     ++ +    + ++++Y  +     P   ++
Sbjct: 313 --AYP---NTSLPPS-ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366

Query: 168 VDDCGGAFTMGLIGG-----------ALFHGIKGFRN--APSGMNR-------------- 200
                    + L+ G           +L+      R   APSG+++              
Sbjct: 367 E--------ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN 418

Query: 201 RFLGMTT----------TIKQKSPILAGNFAVWGA-----MFSTID------------CS 233
           RFL + +          +      ++  N +         ++ T D              
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478

Query: 234 LVY--VRKKEDPWNSIISGAAT-------GGI-----LAARN----GVPAMAGSAL 271
           +V   +R     W +     AT       GG      L  RN    GV  +    L
Sbjct: 479 IVDCIIRLPVK-WETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL 533


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0541    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,561,677
Number of extensions: 280554
Number of successful extensions: 491
Number of sequences better than 10.0: 1
Number of HSP's gapped: 491
Number of HSP's successfully gapped: 3
Length of query: 285
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 192
Effective length of database: 4,105,140
Effective search space: 788186880
Effective search space used: 788186880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.2 bits)