BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13365
(231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VS4|A Chain A, The Binding Of Udp-Galactose By An Active Site Mutant Of
Alpha-1,3 Galactosyltransferase (Alpha3gt)
pdb|2VS4|B Chain B, The Binding Of Udp-Galactose By An Active Site Mutant Of
Alpha-1,3 Galactosyltransferase (Alpha3gt)
Length = 289
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 63 YQVQRHNDNVKLCPQGLG-----GAIFPNLGSETLDLVRTCLKTLPKQIKNIWKREWQQN 117
+ +R ++ P G G AIF ++ L++ + C K + K KN + +W +
Sbjct: 179 FTYERRKESAAYIPFGEGDFYYHAAIFGGTPTQVLNITQECFKGILKDKKNDIEAQWHEE 238
Query: 118 VN-NKLF 123
+ NK F
Sbjct: 239 SHLNKYF 245
>pdb|1VZT|A Chain A, Roles Of Individual Residues Of Alpha-1,3
Galactosyltransferases In Substrate Binding And
Catalysis
pdb|1VZT|B Chain B, Roles Of Individual Residues Of Alpha-1,3
Galactosyltransferases In Substrate Binding And
Catalysis
Length = 289
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 63 YQVQRHNDNVKLCPQGLG-----GAIFPNLGSETLDLVRTCLKTLPKQIKNIWKREWQQN 117
+ +R ++ P G G AIF ++ L++ + C K + K KN + +W
Sbjct: 179 FTYERRKESAAYIPFGEGDFYYHAAIFGGTPTQVLNITQECFKGILKDKKNDIEAQWHDE 238
Query: 118 VN-NKLF 123
+ NK F
Sbjct: 239 SHLNKYF 245
>pdb|2JCJ|A Chain A, Crystal Structure Of Alpha-1,3 Galactosyltransferase (C-
Terminus Truncated Mutant-C3) In Complex With Udp Nd
Tris
Length = 286
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 63 YQVQRHNDNVKLCPQGLG-----GAIFPNLGSETLDLVRTCLKTLPKQIKNIWKREWQQN 117
+ +R ++ P G G AIF ++ L++ + C K + K KN + +W
Sbjct: 179 FTYERRKESAAYIPFGEGDFYYHAAIFGGTPTQVLNITQECFKGILKDKKNDIEAQWHDE 238
Query: 118 VN-NKLF 123
+ NK F
Sbjct: 239 SHLNKYF 245
>pdb|2VS5|A Chain A, The Binding Of Udp-Galactose By An Active Site Mutant Of
Alpha-1,3 Galactosyltransferase (Alpha3gt)
pdb|2VS5|B Chain B, The Binding Of Udp-Galactose By An Active Site Mutant Of
Alpha-1,3 Galactosyltransferase (Alpha3gt)
Length = 286
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 63 YQVQRHNDNVKLCPQGLG-----GAIFPNLGSETLDLVRTCLKTLPKQIKNIWKREW--Q 115
+ +R ++ P G G AIF ++ L++ + C K + K KN + +W Q
Sbjct: 179 FTYERRKESAAYIPFGEGDFYYHAAIFGGTPTQVLNITQECFKGILKDKKNDIEAQWHDQ 238
Query: 116 QNVNNKLFQIKP 127
++N KP
Sbjct: 239 SHLNKYFLLNKP 250
>pdb|2VXM|A Chain A, Screening A Limited Structure-Based Library Identifies
Udp- Galnac-Specific Mutants Of Alpha-1,3
Galactosyltransferase
pdb|2VXM|B Chain B, Screening A Limited Structure-Based Library Identifies
Udp- Galnac-Specific Mutants Of Alpha-1,3
Galactosyltransferase
pdb|2VXM|C Chain C, Screening A Limited Structure-Based Library Identifies
Udp- Galnac-Specific Mutants Of Alpha-1,3
Galactosyltransferase
pdb|2VXM|D Chain D, Screening A Limited Structure-Based Library Identifies
Udp- Galnac-Specific Mutants Of Alpha-1,3
Galactosyltransferase
Length = 273
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 63 YQVQRHNDNVKLCPQGLG-----GAIFPNLGSETLDLVRTCLKTLPKQIKNIWKREWQQN 117
+ +R ++ P G G AIF ++ L++ + C K + K KN + +W
Sbjct: 177 FTYERRKESAAYIPFGEGDFYYRAAIFGGTPTQVLNITQECFKGILKDKKNDIEAQWHDE 236
Query: 118 VN-NKLF 123
+ NK F
Sbjct: 237 SHLNKYF 243
>pdb|1G8O|A Chain A, Crystallographic Structure Of The Native Bovine Alpha-1,3-
Galactosyltransferase Catalytic Domain
pdb|1G93|A Chain A, Crystal Structure Of The Bovine Catalytic Domain Of
Alpha-1, 3-Galactosyltransferase In The Presence Of
Udp-Galactose
Length = 310
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 63 YQVQRHNDNVKLCPQGLG-----GAIFPNLGSETLDLVRTCLKTLPKQIKNIWKREWQQN 117
+ +R ++ P G G AIF ++ L++ + C K + K KN + +W
Sbjct: 200 FTYERRKESAAYIPFGEGDFYYHAAIFGGTPTQVLNITQECFKGILKDKKNDIEAQWHDE 259
Query: 118 VN-NKLF 123
+ NK F
Sbjct: 260 SHLNKYF 266
>pdb|1O7O|A Chain A, Roles Of Individual Residues Of Alpha-1,3
Galactosyltransferases In Substrate Binding And
Catalysis
pdb|1O7O|B Chain B, Roles Of Individual Residues Of Alpha-1,3
Galactosyltransferases In Substrate Binding And
Catalysis
Length = 289
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 63 YQVQRHNDNVKLCPQGLG-----GAIFPNLGSETLDLVRTCLKTLPKQIKNIWKREW--Q 115
+ +R ++ P G G AIF ++ L++ + C K + K KN + +W Q
Sbjct: 179 FTYERRKESAAYIPFGEGDFYYHAAIFGGTPTQVLNITQECFKGILKDKKNDIEAQWHDQ 238
Query: 116 QNVNNKLFQIKP 127
++N KP
Sbjct: 239 SHLNKYFLLNKP 250
>pdb|1FG5|N Chain N, Crystal Structure Of Bovine
Alpha-1,3-Galactosyltransferase Catalytic Domain
Length = 310
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 63 YQVQRHNDNVKLCPQGLG-----GAIFPNLGSETLDLVRTCLKTLPKQIKNIWKREWQQN 117
+ +R ++ P G G AIF ++ L++ + C K + K KN + +W
Sbjct: 200 FTYERRKESAAYIPFGEGDFYYHAAIFGGTPTQVLNITQECFKGILKDKKNDIEAQWHDE 259
Query: 118 VN-NKLF 123
+ NK F
Sbjct: 260 SHLNKYF 266
>pdb|2WGZ|A Chain A, Crystal Structure Of Alpha-1,3 Galactosyltransferase (
Alpha3gt) In A Complex With
P-Nitrophenyl-Beta-Galactoside (Pnp-Beta-Gal)
pdb|2WGZ|B Chain B, Crystal Structure Of Alpha-1,3 Galactosyltransferase (
Alpha3gt) In A Complex With
P-Nitrophenyl-Beta-Galactoside (Pnp-Beta-Gal)
Length = 290
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 63 YQVQRHNDNVKLCPQGLG-----GAIFPNLGSETLDLVRTCLKTLPKQIKNIWKREWQQN 117
+ +R ++ P G G AIF ++ L++ + C K + K KN + +W
Sbjct: 179 FTYERRKESAAYIPFGEGDFYYHAAIFGGTPTQVLNITQECFKGILKDKKNDIEAQWHDE 238
Query: 118 VN-NKLF 123
+ NK F
Sbjct: 239 SHLNKYF 245
>pdb|1K4V|A Chain A, 1.53 A Crystal Structure Of The
Beta-galactoside-alpha-1,3- Galactosyltransferase In
Complex With Udp
pdb|1K4V|B Chain B, 1.53 A Crystal Structure Of The
Beta-galactoside-alpha-1,3- Galactosyltransferase In
Complex With Udp
pdb|1GWV|A Chain A, Alpha-,1,3 Galactosyltransferase - Lactose Complex
pdb|1GWV|B Chain B, Alpha-,1,3 Galactosyltransferase - Lactose Complex
pdb|1GWW|A Chain A, Alpha-,1,3 Galactosyltransferase- Alpha-D-Glucose Complex
pdb|1GWW|B Chain B, Alpha-,1,3 Galactosyltransferase- Alpha-D-Glucose Complex
pdb|1GX0|A Chain A, Alpha-,1,3 Galactosyltransferase - Beta-D-Galactose
Complex
pdb|1GX0|B Chain B, Alpha-,1,3 Galactosyltransferase - Beta-D-Galactose
Complex
pdb|1GX4|A Chain A, Alpha-,1,3 Galactosyltransferase - N-Acetyl Lactosamine
Complex
pdb|1GX4|B Chain B, Alpha-,1,3 Galactosyltransferase - N-Acetyl Lactosamine
Complex
pdb|1O7Q|A Chain A, Roles Of Individual Residues Of Alpha-1,3
Galactosyltransferases In Substrate Binding And
Catalysis
pdb|1O7Q|B Chain B, Roles Of Individual Residues Of Alpha-1,3
Galactosyltransferases In Substrate Binding And
Catalysis
pdb|2JCO|A Chain A, Crystal Structure Of Wild Type Alpha-1,3
Galactosyltransferase In The Absence Of Ligands
Length = 289
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 63 YQVQRHNDNVKLCPQGLG-----GAIFPNLGSETLDLVRTCLKTLPKQIKNIWKREWQQN 117
+ +R ++ P G G AIF ++ L++ + C K + K KN + +W
Sbjct: 179 FTYERRKESAAYIPFGEGDFYYHAAIFGGTPTQVLNITQECFKGILKDKKNDIEAQWHDE 238
Query: 118 VN-NKLF 123
+ NK F
Sbjct: 239 SHLNKYF 245
>pdb|2JCK|A Chain A, Crystal Structure Of Alpha-1,3 Galactosyltransferase
(R365k) In Complex With Udp And 2 Manganese Ion
pdb|2JCL|A Chain A, Crystal Structure Of Alpha-1,3 Galactosyltransferase
(R365k) In The Absence Of Ligands
pdb|2JCL|B Chain B, Crystal Structure Of Alpha-1,3 Galactosyltransferase
(R365k) In The Absence Of Ligands
pdb|2VFZ|A Chain A, Crystal Structure Of Alpha-1,3 Galactosyltransferase
(r365k) In Complex With Udp-2f-galactose
pdb|2VFZ|B Chain B, Crystal Structure Of Alpha-1,3 Galactosyltransferase
(r365k) In Complex With Udp-2f-galactose
Length = 289
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 63 YQVQRHNDNVKLCPQGLG-----GAIFPNLGSETLDLVRTCLKTLPKQIKNIWKREWQQN 117
+ +R ++ P G G AIF ++ L++ + C K + K KN + +W
Sbjct: 179 FTYERRKESAAYIPFGEGDFYYHAAIFGGTPTQVLNITQECFKGILKDKKNDIEAQWHDE 238
Query: 118 VN-NKLF 123
+ NK F
Sbjct: 239 SHLNKYF 245
>pdb|2VS3|A Chain A, The Binding Of Udp-Galactose By An Active Site Mutant Of
Alpha-1,3 Galactosyltransferase (Alpha3gt)
pdb|2VS3|B Chain B, The Binding Of Udp-Galactose By An Active Site Mutant Of
Alpha-1,3 Galactosyltransferase (Alpha3gt)
Length = 289
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 63 YQVQRHNDNVKLCPQGLG-----GAIFPNLGSETLDLVRTCLKTLPKQIKNIWKREWQQN 117
+ +R ++ P G G AIF ++ L++ + C K + K KN + +W
Sbjct: 179 FTYERRKESAAYIPFGEGDFYYHAAIFGGTPTQVLNITQECFKGILKDKKNDIEAQWHNE 238
Query: 118 VN-NKLF 123
+ NK F
Sbjct: 239 SHLNKYF 245
>pdb|2VXL|A Chain A, Screening A Limited Structure-Based Library Identifies
Udp- Galnac-Specific Mutants Of Alpha-1,3
Galactosyltransferase
Length = 277
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 63 YQVQRHNDNVKLCPQGLG-----GAIFPNLGSETLDLVRTCLKTLPKQIKNIWKREWQQN 117
+ +R ++ P G G G +F ++ L++ + C K + K KN + +W
Sbjct: 177 FTYERRKESAAYIPFGEGDFYYAGGLFGGTPTQVLNITQECFKGILKDKKNDIEAQWHDE 236
Query: 118 VN-NKLF 123
+ NK F
Sbjct: 237 SHLNKYF 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,663,054
Number of Sequences: 62578
Number of extensions: 250489
Number of successful extensions: 521
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 16
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)