BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13365
         (231 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|C5DY19|SP110_ZYGRC Spindle pole body component 110 OS=Zygosaccharomyces rouxii (strain
           ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229)
           GN=SPC110 PE=3 SV=1
          Length = 835

 Score = 34.3 bits (77), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 16/102 (15%)

Query: 45  VHLVSGMVHSALEGKKTFYQVQRHNDNVKLCPQGLGGAIFPNLGSETLDL--VRTCLKTL 102
           VHL + +    +E  K   +++R  DNVK            N  S   ++  ++    +L
Sbjct: 342 VHLETRIKDREIENAKIQSELERLRDNVK------------NNNSSNFEIGELKHAKASL 389

Query: 103 PKQIKNIWKREWQQNVNNKLFQIKPELGEWKSSYNRKRTLET 144
             +++N+   E + N+N ++  ++ E  EWKS Y R  +L++
Sbjct: 390 DDKVRNLT--EERHNLNQRISALRKECDEWKSKYQRNESLDS 429


>sp|P52458|UL07_HHV7J Protein U75 OS=Human herpesvirus 7 (strain JI) GN=U75 PE=3 SV=1
          Length = 256

 Score = 31.6 bits (70), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 2/85 (2%)

Query: 143 ETALARIRLGHTNLTH--VYLIKREEPPLCSCGQRLTIQHIIIECPTLVALRNSIFGSSR 200
           E  L  IRL  T      +YLI +E+     CG    ++++ I+  TL+ LR+ I   S 
Sbjct: 88  EDTLEEIRLSKTQCKRRIIYLILKEDTEFLLCGIVYALENLPIKGQTLLKLRDIIKKISV 147

Query: 201 QITLSEVLKDSPADTKKVLKFLQYS 225
            + +S++L  +      +L+++ Y 
Sbjct: 148 TLPVSKLLACTCQKLISILRYIFYD 172


>sp|O44219|ZW10_DROGR Centromere/kinetochore protein zw10 OS=Drosophila grimshawi
           GN=mit(1)15 PE=3 SV=1
          Length = 714

 Score = 30.8 bits (68), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 87  LGSETLDLVRTCLKTLPKQIKNIWKREWQQNVNNKLF 123
           LG+  L LVR CL+ L + +KN+W++   +NV N  F
Sbjct: 564 LGTAPLRLVRQCLRQL-ELLKNVWQQVPAENVYNNSF 599


>sp|O44218|ZW10_DROPS Centromere/kinetochore protein zw10 OS=Drosophila pseudoobscura
           pseudoobscura GN=mit(1)15 PE=3 SV=2
          Length = 718

 Score = 30.8 bits (68), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 87  LGSETLDLVRTCLKTLPKQIKNIWKREWQQNVNNKLF 123
           LG+  L LVR CL+ L + +KN+W+     NV N  F
Sbjct: 568 LGTGPLKLVRQCLRQL-ELLKNVWQNVLPDNVYNSTF 603


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.136    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,553,364
Number of Sequences: 539616
Number of extensions: 3167939
Number of successful extensions: 7637
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7633
Number of HSP's gapped (non-prelim): 7
length of query: 231
length of database: 191,569,459
effective HSP length: 114
effective length of query: 117
effective length of database: 130,053,235
effective search space: 15216228495
effective search space used: 15216228495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)