Query psy13365
Match_columns 231
No_of_seqs 155 out of 270
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 17:37:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13365.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13365hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK08719 ribonuclease H; Revie 98.6 4.5E-08 9.8E-13 79.3 4.4 28 41-68 116-143 (147)
2 PF00075 RNase_H: RNase H; In 98.6 3E-08 6.5E-13 77.2 2.8 47 22-68 58-129 (132)
3 cd06222 RnaseH RNase H (RNase 98.5 1.5E-07 3.2E-12 70.6 3.6 61 8-68 48-128 (130)
4 PRK06548 ribonuclease H; Provi 98.4 1.5E-07 3.3E-12 77.5 3.2 47 23-69 63-139 (161)
5 PRK00203 rnhA ribonuclease H; 98.4 1.8E-07 4E-12 75.6 3.0 27 42-68 112-138 (150)
6 COG0328 RnhA Ribonuclease HI [ 98.0 8.6E-06 1.9E-10 66.5 4.2 25 44-68 117-141 (154)
7 KOG3752|consensus 97.4 0.00014 3E-09 66.7 3.4 28 41-68 334-361 (371)
8 PF13966 zf-RVT: zinc-binding 95.9 0.0044 9.6E-08 45.3 1.7 27 163-189 55-83 (86)
9 PF13456 RVT_3: Reverse transc 91.8 0.18 3.9E-06 35.6 3.0 57 8-68 8-83 (87)
10 PRK13907 rnhA ribonuclease H; 85.5 0.8 1.7E-05 35.4 2.9 43 22-68 62-123 (128)
11 PRK07238 bifunctional RNase H/ 67.3 4.6 0.0001 37.1 2.7 23 43-69 107-129 (372)
12 PRK07708 hypothetical protein; 63.9 7 0.00015 33.7 3.0 41 24-68 143-204 (219)
13 PF00098 zf-CCHC: Zinc knuckle 54.7 9.2 0.0002 19.8 1.3 16 169-187 2-18 (18)
14 PF15322 PMSI1: Protein missin 47.1 11 0.00024 33.7 1.5 22 137-158 206-228 (311)
15 COG0296 GlgB 1,4-alpha-glucan 45.4 26 0.00055 35.0 3.9 45 21-65 203-250 (628)
16 KOG1930|consensus 31.3 34 0.00075 32.5 2.2 64 122-186 204-281 (483)
17 PF13917 zf-CCHC_3: Zinc knuck 26.5 23 0.0005 22.6 0.1 18 167-187 4-22 (42)
18 PF13696 zf-CCHC_2: Zinc knuck 20.6 45 0.00098 20.0 0.6 16 169-187 10-26 (32)
No 1
>PRK08719 ribonuclease H; Reviewed
Probab=98.60 E-value=4.5e-08 Score=79.34 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=25.3
Q ss_pred CCCeEEEEEeccCCCCCcchhHHHHhhh
Q psy13365 41 KSQAVHLVSGMVHSALEGKKTFYQVQRH 68 (231)
Q Consensus 41 ~~~~V~l~WIPgH~GI~GNE~AD~aak~ 68 (231)
+...|+|.|||||+|++|||.||++|++
T Consensus 116 ~~~~i~~~~VkgH~g~~~Ne~aD~lA~~ 143 (147)
T PRK08719 116 ARKYVEVEKVTAHSGIEGNEAADMLAQA 143 (147)
T ss_pred CCCcEEEEEecCCCCChhHHHHHHHHHH
Confidence 3567999999999999999999999885
No 2
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site. This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....
Probab=98.58 E-value=3e-08 Score=77.22 Aligned_cols=47 Identities=15% Similarity=0.158 Sum_probs=35.1
Q ss_pred ccccccCCchhhHHHHHh------------------------hCCCeEEEEEeccCCCC-CcchhHHHHhhh
Q psy13365 22 KTLKNHCDSCCDVKILQN------------------------EKSQAVHLVSGMVHSAL-EGKKTFYQVQRH 68 (231)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~------------------------~~~~~V~l~WIPgH~GI-~GNE~AD~aak~ 68 (231)
..+.+.+||...+..+.. ..+..|+|+|||||+|+ .|||.||+|||+
T Consensus 58 ~~v~I~tDS~~v~~~l~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~v~~~~V~~H~~~~~~N~~aD~lAk~ 129 (132)
T PF00075_consen 58 RKVTIYTDSQYVLNALNKWLHGNGWKKTSNGRPIKNEIWELLSRGIKVRFRWVPGHSGVPQGNERADRLAKE 129 (132)
T ss_dssp SEEEEEES-HHHHHHHHTHHHHTTSBSCTSSSBHTHHHHHHHHHSSEEEEEESSSSSSSHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHhccccccccccccccchhheeeccccceEEeeeeccCcCCCchhHHHHHHHHHH
Confidence 556666777766664443 12347999999999999 699999999984
No 3
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=98.45 E-value=1.5e-07 Score=70.58 Aligned_cols=61 Identities=16% Similarity=0.103 Sum_probs=50.6
Q ss_pred cchhhhhhhcCCCCccccccCCchhhHHHHHhh--------------------CCCeEEEEEeccCCCCCcchhHHHHhh
Q psy13365 8 GLCKSYDILRGNPWKTLKNHCDSCCDVKILQNE--------------------KSQAVHLVSGMVHSALEGKKTFYQVQR 67 (231)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~V~l~WIPgH~GI~GNE~AD~aak 67 (231)
++....+.+...+...+.+.+||...++.++.. ....++|.|||+|+|+++|+.||.+|+
T Consensus 48 al~~al~~~~~~~~~~i~i~~Ds~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~v~~h~~~~~n~~ad~la~ 127 (130)
T cd06222 48 ALIEALELALELGGKKVNIYTDSQYVINALTGWYEGKPVKNVDLWQRLLALLKRFHKVRFEWVPGHSGIEGNERADALAK 127 (130)
T ss_pred HHHHHHHHHHhCCCceEEEEECHHHHHHHhhccccCCChhhHHHHHHHHHHHhCCCeEEEEEcCCCCCCcchHHHHHHHH
Confidence 344455556567788999999999999999864 567899999999999999999999888
Q ss_pred h
Q psy13365 68 H 68 (231)
Q Consensus 68 ~ 68 (231)
+
T Consensus 128 ~ 128 (130)
T cd06222 128 E 128 (130)
T ss_pred h
Confidence 4
No 4
>PRK06548 ribonuclease H; Provisional
Probab=98.42 E-value=1.5e-07 Score=77.47 Aligned_cols=47 Identities=11% Similarity=0.065 Sum_probs=38.4
Q ss_pred cccccCCchhhHHHHHh------------hCC------------------CeEEEEEeccCCCCCcchhHHHHhhhc
Q psy13365 23 TLKNHCDSCCDVKILQN------------EKS------------------QAVHLVSGMVHSALEGKKTFYQVQRHN 69 (231)
Q Consensus 23 ~~~~~~~~~~~~~~~~~------------~~~------------------~~V~l~WIPgH~GI~GNE~AD~aak~~ 69 (231)
++.+.+||.-+|+.++. ++| ..|+|.|||||+|++|||.||+||+++
T Consensus 63 ~v~I~TDS~yvi~~i~~W~~~Wk~~gWk~s~G~pV~N~dL~~~l~~l~~~~~v~~~wVkgHsg~~gNe~aD~LA~~a 139 (161)
T PRK06548 63 PILILSDSKYVINSLTKWVYSWKMRKWRKADGKPVLNQEIIQEIDSLMENRNIRMSWVNAHTGHPLNEAADSLARQA 139 (161)
T ss_pred eEEEEeChHHHHHHHHHHHHHHHHCCCcccCCCccccHHHHHHHHHHHhcCceEEEEEecCCCCHHHHHHHHHHHHH
Confidence 46788888888888872 222 369999999999999999999988864
No 5
>PRK00203 rnhA ribonuclease H; Reviewed
Probab=98.39 E-value=1.8e-07 Score=75.65 Aligned_cols=27 Identities=7% Similarity=0.006 Sum_probs=24.7
Q ss_pred CCeEEEEEeccCCCCCcchhHHHHhhh
Q psy13365 42 SQAVHLVSGMVHSALEGKKTFYQVQRH 68 (231)
Q Consensus 42 ~~~V~l~WIPgH~GI~GNE~AD~aak~ 68 (231)
...|.|.|||||+|++|||.||++|++
T Consensus 112 ~~~v~~~wV~~H~~~~~N~~AD~lA~~ 138 (150)
T PRK00203 112 RHQIKWHWVKGHAGHPENERCDELARA 138 (150)
T ss_pred cCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 357999999999999999999999885
No 6
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=97.96 E-value=8.6e-06 Score=66.50 Aligned_cols=25 Identities=16% Similarity=-0.015 Sum_probs=23.8
Q ss_pred eEEEEEeccCCCCCcchhHHHHhhh
Q psy13365 44 AVHLVSGMVHSALEGKKTFYQVQRH 68 (231)
Q Consensus 44 ~V~l~WIPgH~GI~GNE~AD~aak~ 68 (231)
.|.+.|||||.|.+|||.||++|++
T Consensus 117 ~v~~~WVkgH~g~~~NeraD~LA~~ 141 (154)
T COG0328 117 LVFWEWVKGHAGHPENERADQLARE 141 (154)
T ss_pred eEEEEEeeCCCCChHHHHHHHHHHH
Confidence 8999999999999999999999885
No 7
>KOG3752|consensus
Probab=97.37 E-value=0.00014 Score=66.66 Aligned_cols=28 Identities=18% Similarity=0.115 Sum_probs=26.2
Q ss_pred CCCeEEEEEeccCCCCCcchhHHHHhhh
Q psy13365 41 KSQAVHLVSGMVHSALEGKKTFYQVQRH 68 (231)
Q Consensus 41 ~~~~V~l~WIPgH~GI~GNE~AD~aak~ 68 (231)
++..|.+.|||||.||.|||+||.+|++
T Consensus 334 ~~~~vq~~~V~Gh~gi~gne~Ad~lARk 361 (371)
T KOG3752|consen 334 SNKKVQQEYVGGHSGILGNEMADALARK 361 (371)
T ss_pred ccCceEEEEecCcCCcchHHHHHHHHhh
Confidence 6789999999999999999999999984
No 8
>PF13966 zf-RVT: zinc-binding in reverse transcriptase
Probab=95.88 E-value=0.0044 Score=45.27 Aligned_cols=27 Identities=33% Similarity=0.801 Sum_probs=22.8
Q ss_pred CCCCCCCc-ccCC-CCccccccccCcchH
Q psy13365 163 KREEPPLC-SCGQ-RLTIQHIIIECPTLV 189 (231)
Q Consensus 163 ~~~~~p~C-~CG~-~~Tv~HiL~~Cp~~~ 189 (231)
+...++.| .||. .||+.|+|++||...
T Consensus 55 ~~~~~~~C~~C~~~~Et~~Hlf~~C~~a~ 83 (86)
T PF13966_consen 55 GIQVDPICPLCGNEEETIEHLFFHCPFAR 83 (86)
T ss_pred CCccCCccccCCCccccccceeccCcCcc
Confidence 44667999 9995 899999999999764
No 9
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=91.84 E-value=0.18 Score=35.59 Aligned_cols=57 Identities=12% Similarity=0.019 Sum_probs=40.2
Q ss_pred cchhhhhhhcCCCCccccccCCchhhHHHHHhhC-------------------CCeEEEEEeccCCCCCcchhHHHHhhh
Q psy13365 8 GLCKSYDILRGNPWKTLKNHCDSCCDVKILQNEK-------------------SQAVHLVSGMVHSALEGKKTFYQVQRH 68 (231)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~V~l~WIPgH~GI~GNE~AD~aak~ 68 (231)
+|-.........-+..+-..+||...|..|+... -..+.+.||| =++|..||.+||.
T Consensus 8 al~~al~~a~~~g~~~i~v~sDs~~vv~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~----r~~N~~A~~LA~~ 83 (87)
T PF13456_consen 8 ALLEALQLAWELGIRKIIVESDSQLVVDAINGRSSSRSELRPLIQDIRSLLDRFWNVSVSHIP----REQNKVADALAKF 83 (87)
T ss_dssp HHHHHHHHHHCCT-SCEEEEES-HHHHHHHTTSS---SCCHHHHHHHHHHHCCCSCEEEEE------GGGSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEecCccccccccccccccccccccchhhhhhhccccceEEEEEC----hHHhHHHHHHHHH
Confidence 4455555666677788888888888888887442 2379999999 8999999999984
No 10
>PRK13907 rnhA ribonuclease H; Provisional
Probab=85.50 E-value=0.8 Score=35.36 Aligned_cols=43 Identities=12% Similarity=0.008 Sum_probs=30.2
Q ss_pred ccccccCCchhhHHHHHhh-------------------CCCeEEEEEeccCCCCCcchhHHHHhhh
Q psy13365 22 KTLKNHCDSCCDVKILQNE-------------------KSQAVHLVSGMVHSALEGKKTFYQVQRH 68 (231)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~-------------------~~~~V~l~WIPgH~GI~GNE~AD~aak~ 68 (231)
..+....||..-++.++.+ +-..+.|.|||. ++|+.||.+|+.
T Consensus 62 ~~v~i~sDS~~vi~~~~~~~~~~~~~~~l~~~~~~l~~~f~~~~~~~v~r----~~N~~Ad~LA~~ 123 (128)
T PRK13907 62 NIVSFRTDSQLVERAVEKEYAKNKMFAPLLEEALQYIKSFDLFFIKWIPS----SQNKVADELARK 123 (128)
T ss_pred CEEEEEechHHHHHHHhHHHhcChhHHHHHHHHHHHHhcCCceEEEEcCc----hhchhHHHHHHH
Confidence 4566667777666666532 122567899998 599999999884
No 11
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=67.29 E-value=4.6 Score=37.05 Aligned_cols=23 Identities=4% Similarity=-0.188 Sum_probs=19.5
Q ss_pred CeEEEEEeccCCCCCcchhHHHHhhhc
Q psy13365 43 QAVHLVSGMVHSALEGKKTFYQVQRHN 69 (231)
Q Consensus 43 ~~V~l~WIPgH~GI~GNE~AD~aak~~ 69 (231)
..|++.|||. ++|+.||.+|+.+
T Consensus 107 ~~~~i~~v~r----~~N~~AD~LA~~a 129 (372)
T PRK07238 107 GRVTYTWIPR----ARNAHADRLANEA 129 (372)
T ss_pred CceEEEECCc----hhhhHHHHHHHHH
Confidence 5799999997 7899999887743
No 12
>PRK07708 hypothetical protein; Validated
Probab=63.95 E-value=7 Score=33.67 Aligned_cols=41 Identities=15% Similarity=-0.035 Sum_probs=28.2
Q ss_pred ccccCCchhhHHHHHhh---------------------CCCeEEEEEeccCCCCCcchhHHHHhhh
Q psy13365 24 LKNHCDSCCDVKILQNE---------------------KSQAVHLVSGMVHSALEGKKTFYQVQRH 68 (231)
Q Consensus 24 ~~~~~~~~~~~~~~~~~---------------------~~~~V~l~WIPgH~GI~GNE~AD~aak~ 68 (231)
+.+..||..-++-++.+ -...+++.||| -+-|+.||++|+.
T Consensus 143 V~I~~DSqlVi~qi~g~wk~~~~~l~~y~~~i~~l~~~~~l~~~~~~Vp----R~~N~~AD~LAk~ 204 (219)
T PRK07708 143 VTFRGDSQVVLNQLAGEWPCYDEHLNHWLDRIEQKLKQLKLTPVYEPIS----RKQNKEADQLATQ 204 (219)
T ss_pred EEEEeccHHHHHHhCCCceeCChhHHHHHHHHHHHHhhCCceEEEEECC----chhhhHHHHHHHH
Confidence 45667777766555532 12247788998 4679999999985
No 13
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=54.65 E-value=9.2 Score=19.76 Aligned_cols=16 Identities=44% Similarity=1.184 Sum_probs=12.7
Q ss_pred Cc-ccCCCCccccccccCcc
Q psy13365 169 LC-SCGQRLTIQHIIIECPT 187 (231)
Q Consensus 169 ~C-~CG~~~Tv~HiL~~Cp~ 187 (231)
.| .||.. -|+..+||.
T Consensus 2 ~C~~C~~~---GH~~~~Cp~ 18 (18)
T PF00098_consen 2 KCFNCGEP---GHIARDCPK 18 (18)
T ss_dssp BCTTTSCS---SSCGCTSSS
T ss_pred cCcCCCCc---CcccccCcc
Confidence 57 88865 799999984
No 14
>PF15322 PMSI1: Protein missing in infertile sperm 1, putative
Probab=47.14 E-value=11 Score=33.73 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=15.7
Q ss_pred cccchH-HHHHHHHHhCcccchh
Q psy13365 137 NRKRTL-ETALARIRLGHTNLTH 158 (231)
Q Consensus 137 ~l~R~~-~~~L~rlRtGH~~ltH 158 (231)
+|+-+. .-.|.||||.|-..|+
T Consensus 206 GlsGrLRvGALsqLrTehrPCtY 228 (311)
T PF15322_consen 206 GLSGRLRVGALSQLRTEHRPCTY 228 (311)
T ss_pred ccccceecchhhhhhhccCCccc
Confidence 344333 3489999999999984
No 15
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=45.42 E-value=26 Score=35.05 Aligned_cols=45 Identities=16% Similarity=-0.016 Sum_probs=34.4
Q ss_pred CccccccCCchhhHHHHH---hhCCCeEEEEEeccCCCCCcchhHHHH
Q psy13365 21 WKTLKNHCDSCCDVKILQ---NEKSQAVHLVSGMVHSALEGKKTFYQV 65 (231)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~---~~~~~~V~l~WIPgH~GI~GNE~AD~a 65 (231)
++-|..==|+.-++|.+- .+.|..|-|-|||+|-+..||=+|-..
T Consensus 203 ~yAp~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d~~~L~~fd 250 (628)
T COG0296 203 YYAPTSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPPDGNYLARFD 250 (628)
T ss_pred eccccccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCCcchhhhcC
Confidence 344444446666778777 458999999999999999999888643
No 16
>KOG1930|consensus
Probab=31.33 E-value=34 Score=32.47 Aligned_cols=64 Identities=25% Similarity=0.305 Sum_probs=42.9
Q ss_pred ccccccCcccccccccccchHHHHHHH--------HHhCcccch-hhhhcCCCCCC-Cccc--CC--CCccccccccCc
Q psy13365 122 LFQIKPELGEWKSSYNRKRTLETALAR--------IRLGHTNLT-HVYLIKREEPP-LCSC--GQ--RLTIQHIIIECP 186 (231)
Q Consensus 122 L~~ik~~~~~w~~~~~l~R~~~~~L~r--------lRtGH~~lt-H~~l~~~~~~p-~C~C--G~--~~Tv~HiL~~Cp 186 (231)
...++-+-+.|+.+ +++|-+++.|-+ +|--|++-. ++.-|+...+| .-.= |. .|-|.|+|+||-
T Consensus 204 vkFV~DTSKyWYKP-~isREQAIalLrdkePGtFvvRDS~SfrGayGLAlKVstPPPs~~~~~g~~~neLVRHFLIE~s 281 (483)
T KOG1930|consen 204 PLFVKDTSKYWYKP-NISREQAIALLRDKEPGTFVVRDSHSFRGAYGLALKVSTPPPSVQPGDGSDSNELVRHFLIEPS 281 (483)
T ss_pred ceeeecccccccCC-CCCHHHHHHHhhcCCCCeEEEecCCcCCCccceEEEeccCCCcccCCCCCchhhhhhhheeccC
Confidence 34456777899766 799999988766 477777553 33336665544 3422 32 389999999993
No 17
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=26.55 E-value=23 Score=22.58 Aligned_cols=18 Identities=44% Similarity=1.023 Sum_probs=14.9
Q ss_pred CCCc-ccCCCCccccccccCcc
Q psy13365 167 PPLC-SCGQRLTIQHIIIECPT 187 (231)
Q Consensus 167 ~p~C-~CG~~~Tv~HiL~~Cp~ 187 (231)
...| -||.. -|+-++||.
T Consensus 4 ~~~CqkC~~~---GH~tyeC~~ 22 (42)
T PF13917_consen 4 RVRCQKCGQK---GHWTYECPN 22 (42)
T ss_pred CCcCcccCCC---CcchhhCCC
Confidence 4678 99865 799999997
No 18
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=20.57 E-value=45 Score=20.03 Aligned_cols=16 Identities=56% Similarity=1.377 Sum_probs=13.1
Q ss_pred Cc-ccCCCCccccccccCcc
Q psy13365 169 LC-SCGQRLTIQHIIIECPT 187 (231)
Q Consensus 169 ~C-~CG~~~Tv~HiL~~Cp~ 187 (231)
.| .|+.. -|++-+||.
T Consensus 10 ~C~~C~~~---GH~i~dCP~ 26 (32)
T PF13696_consen 10 VCHRCGQK---GHWIQDCPT 26 (32)
T ss_pred EeecCCCC---CccHhHCCC
Confidence 58 88865 499999997
Done!