RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13365
(231 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 4e-07
Identities = 37/223 (16%), Positives = 75/223 (33%), Gaps = 53/223 (23%)
Query: 13 YDILRGNPWKTLKNHCDSCCDVKILQNEKSQAVHLVSGMVHSALEGKKTF-YQVQRHNDN 71
Y++ R P+ L+ + L+ K+ + G++ S GK V +
Sbjct: 129 YNVSRLQPYLKLRQA------LLELRPAKNVLID---GVLGS---GKTWVALDVCL-SYK 175
Query: 72 VKLCPQGLGGAIF-PNLGSETLDLVRTCLKTLPKQIKNIWKREWQQNVNNKLFQIKPELG 130
V+ + IF NL + +T+ + ++ + +QI P
Sbjct: 176 VQCK---MDFKIFWLNLKNCNSP------ETVLEMLQKLL------------YQIDPNWT 214
Query: 131 EW-KSSYNRKRTLETALARIR--LGHTNLTHVYLIKREEPPLCSCGQRLTIQHIIIECPT 187
S N K + + A +R L + L+ + + + C
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN---VQN---AKAWNAFNLSCKI 268
Query: 188 LVALRN-SIF-----GSSRQITLSEVLKD-SPADTKKVL-KFL 222
L+ R + ++ I+L +P + K +L K+L
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Score = 37.1 bits (85), Expect = 0.004
Identities = 32/168 (19%), Positives = 41/168 (24%), Gaps = 48/168 (28%)
Query: 2 DRPNHL----GLCKSYDILRG--NP--WKTLKNHCDSCCDVKIL--QNEKSQAVHLVSGM 51
L +L N W C KIL K
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC------KILLTTRFKQ--------- 276
Query: 52 VHSALEGKKTFYQVQRHNDNVKLCPQGLGGAIFPN-LGSETLDLVRTCLKTLP------- 103
V L T + H+ + + L DL R L T P
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKS--LLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 104 ---KQIKNIWKREWQQNVNNKLFQIKPELGEWKSSYNRKRTLETALAR 148
+ W W+ +KL I +SS N LE A R
Sbjct: 335 ESIRDGLATWDN-WKHVNCDKLTTII------ESSLN---VLEPAEYR 372
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.072
Identities = 43/285 (15%), Positives = 79/285 (27%), Gaps = 106/285 (37%)
Query: 1 MDRPNHLGLCKSY---DILRGNPWKTLKNHCDSCCDVKILQNEKSQAVHLVSGMV-HSAL 56
D H + DI+ NP L H +I +N S M+ + +
Sbjct: 1649 ADN--HFKDTYGFSILDIVINNP-VNLTIHFGGEKGKRIREN--------YSAMIFETIV 1697
Query: 57 EGKKTFYQVQRHNDNVKLCPQGLGGAIF--PNLGSETLDLVRT-----CLKTLPKQIKNI 109
+GK ++ + + + F L T L + K
Sbjct: 1698 DGKLKTEKIFKEIN------EHSTSYTFRSEK---GLLSA--TQFTQPALTLMEKAAFED 1746
Query: 110 WKREWQQNVNNKLFQIKPE--------LGEWKSSYN------------------RKR--T 141
K + + P LGE Y R T
Sbjct: 1747 LKSK----------GLIPADATFAGHSLGE----YAALASLADVMSIESLVEVVFYRGMT 1792
Query: 142 LETALARIRLGHTNLTHVYLI-----KREEPPLCSCGQRLTIQHIIIECPTLVALRNSIF 196
++ A+ R LG +N Y + R + ++ + LV + N +
Sbjct: 1793 MQVAVPRDELGRSN----YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN--Y 1846
Query: 197 -GSSRQI----------TLSEVLKDSPADTKKVLKFLQYSKLLKL 230
++Q T++ VL +K+ +++L
Sbjct: 1847 NVENQQYVAAGDLRALDTVTNVLNF--IKLQKI-------DIIEL 1882
Score = 31.9 bits (72), Expect = 0.20
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 26/67 (38%)
Query: 176 LTIQHIIIECPTLVALRNSIFGSSRQITLSEVLKDS-----PADTKK------------- 217
LT+ H +E LV + ++ L++ P T+
Sbjct: 9 LTLSHGSLEHVLLV--------PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 218 VLKFLQY 224
V KFL Y
Sbjct: 61 VGKFLGY 67
>3bam_A R. bamhi, protein (restriction endonuclease bamhi); hydrolase,
phosphodiesterase, complex (endonuclease/DNA),
protein/DNA; HET: DNA; 1.80A {Bacillus
amyloliquefaciens} SCOP: c.52.1.3 PDB: 1bhm_A* 1bam_A*
2bam_A* 1esg_A*
Length = 213
Score = 27.5 bits (60), Expect = 3.1
Identities = 12/102 (11%), Positives = 32/102 (31%)
Query: 35 KILQNEKSQAVHLVSGMVHSALEGKKTFYQVQRHNDNVKLCPQGLGGAIFPNLGSETLDL 94
K++Q ++ + + A T +++ + V + +
Sbjct: 20 KLIQQAYNEVKTSICSPIWPATSKTFTINNTEKNCNGVVPIKELCYTLLEDTYNWYREKP 79
Query: 95 VRTCLKTLPKQIKNIWKREWQQNVNNKLFQIKPELGEWKSSY 136
+ K +E+ +N K ++ E G S++
Sbjct: 80 LDILKLEKKKGGPIDVYKEFIENSELKRVGMEFETGNISSAH 121
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 26.7 bits (60), Expect = 4.7
Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 14/92 (15%)
Query: 76 PQGLGGAIFPNLGSETLDLVRTCLKTLPKQIKNIWKREWQQNVNNKLFQIKPELGEWKS- 134
+G P L + L L + + ++ Q + +L ++K +GE
Sbjct: 66 KAAVGE--LPEK--SKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEK 121
Query: 135 -----SYNRKRTLETALARIRLGHTNLTHVYL 161
Y L+ A+ + + +
Sbjct: 122 SKLQEIYQELTQLKAAVGEL----PDQSKQQQ 149
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.3 bits (57), Expect = 7.9
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 111 KREWQQNVNNKLFQIKPELGEWKSSYNRKRTLETALARIR 150
++EW++ + K +L EW + + RI
Sbjct: 109 EQEWRE-------KAKKDLEEWNQRQSEQVEKNKINNRIA 141
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.418
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,365,987
Number of extensions: 181477
Number of successful extensions: 346
Number of sequences better than 10.0: 1
Number of HSP's gapped: 332
Number of HSP's successfully gapped: 22
Length of query: 231
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 141
Effective length of database: 4,188,903
Effective search space: 590635323
Effective search space used: 590635323
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)