RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13365
         (231 letters)



>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 298

 Score = 26.4 bits (57), Expect = 3.5
 Identities = 10/91 (10%), Positives = 26/91 (28%), Gaps = 3/91 (3%)

Query: 39  NEKSQAVHLVSGMVHSALEGKKTFYQVQRHNDNVKLCPQGLGGAIFPNLGSETLDLVRTC 98
           +E  Q   +   +             +  +  +     +     + P L  +   L+   
Sbjct: 207 SEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQM 266

Query: 99  LKTLPKQ---IKNIWKREWQQNVNNKLFQIK 126
           L   P +    K      + Q+V   +  ++
Sbjct: 267 LHYDPNKRISAKAALAHPFFQDVTKPVPHLR 297


>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
           pestis [TaxId: 632]}
          Length = 353

 Score = 25.9 bits (55), Expect = 4.4
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 83  IFPNLGSETLDLVRTCLKTLPKQIKNIWKREWQQNVNNKLFQIKPEL 129
           + P+L  E+L      L  LP+  +++       N    L  + P L
Sbjct: 56  LPPHL--ESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLL 100


>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium
           falciparum) [TaxId: 5833]}
          Length = 286

 Score = 25.6 bits (55), Expect = 5.9
 Identities = 10/67 (14%), Positives = 24/67 (35%)

Query: 39  NEKSQAVHLVSGMVHSALEGKKTFYQVQRHNDNVKLCPQGLGGAIFPNLGSETLDLVRTC 98
           +E  Q + +   +     +      ++ +++ N  +       +    L    +DL+   
Sbjct: 205 SEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKM 264

Query: 99  LKTLPKQ 105
           LK  P Q
Sbjct: 265 LKLDPNQ 271


>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare
           (Aplysia californica), twk43 [TaxId: 6500]}
          Length = 352

 Score = 25.4 bits (55), Expect = 6.7
 Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 5/83 (6%)

Query: 51  MVHSALEGKKTFYQVQRHN--DNVKLCPQGLGGAIFPNLGSETLDLVRTCLKTLPKQ--- 105
           + +  L G   F          NVK C        F ++  E  D ++  L+  P++   
Sbjct: 217 LGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLT 276

Query: 106 IKNIWKREWQQNVNNKLFQIKPE 128
           + +  +  W +  ++ L    P 
Sbjct: 277 VHDALEHPWLKGDHSNLTSRIPS 299


>d2f71a1 c.45.1.2 (A:2-298) Tyrosine phosphatase {Human (Homo
           sapiens), 1B [TaxId: 9606]}
          Length = 297

 Score = 25.1 bits (54), Expect = 8.5
 Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 7/87 (8%)

Query: 102 LPKQIKNIWKREWQQNVNNKLFQIKPELGE-------WKSSYNRKRTLETALARIRLGHT 154
           LP    + W+  W+Q     +   +            W     ++   E    ++ L   
Sbjct: 87  LPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISE 146

Query: 155 NLTHVYLIKREEPPLCSCGQRLTIQHI 181
           ++   Y +++ E    +  +   I H 
Sbjct: 147 DIKSYYTVRQLELENLTTQETREILHF 173


>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 346

 Score = 25.2 bits (54), Expect = 8.9
 Identities = 10/65 (15%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 83  IFPNLGSETLDLVRTCLKTLPKQ---IKNIWKREWQQNVNNKLFQIKPELGEWKSSY-NR 138
           I  N     ++L+   L    +Q           + +++++   + +P++ ++  S+ + 
Sbjct: 269 ILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHDT--EDEPQVQKYDDSFDDV 326

Query: 139 KRTLE 143
            RTL+
Sbjct: 327 DRTLD 331


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0501    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 842,531
Number of extensions: 36400
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 14
Length of query: 231
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,281,736
Effective search space: 190978664
Effective search space used: 190978664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.0 bits)