BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13368
(182 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3ULF4|SPG7_MOUSE Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1
Length = 781
Score = 136 bits (343), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 87/115 (75%), Gaps = 3/115 (2%)
Query: 64 PSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNEN 123
P +Q L+ KE+LF+RMCMALGGRAAEAI F+R+TSGAQ+DL+KVT +A ++QFGM +
Sbjct: 611 PRDQYLFTKEQLFERMCMALGGRAAEAISFSRVTSGAQDDLRKVTRIAYSMVKQFGMAPS 670
Query: 124 IGLVSFPK-DDNRQSI--RPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL 175
IG VSFP+ + I RP+S+ L +MD EA L+A+ Y HTEKVL DN+DKL
Sbjct: 671 IGPVSFPEAQEGLMGIGRRPFSQGLQQMMDHEAKLLVAKAYRHTEKVLLDNLDKL 725
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 40/55 (72%), Gaps = 2/55 (3%)
Query: 7 NQMSRAKFTLVDPLVGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
NQ+ A+FT+VD G +GV F DVAG+ EAK+EV EFVDYLK PE + LGAK
Sbjct: 288 NQLKMARFTIVDGKTG--KGVSFQDVAGMHEAKLEVREFVDYLKSPERFLQLGAK 340
>sp|Q7TT47|SPG7_RAT Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1
Length = 744
Score = 136 bits (342), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 87/115 (75%), Gaps = 3/115 (2%)
Query: 64 PSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNEN 123
P +Q L+ KE+LF+RMCMALGGRAAEAI F+R+TSGAQ+DL+KVT +A ++QFGM +
Sbjct: 574 PRDQYLFTKEQLFERMCMALGGRAAEAISFSRVTSGAQDDLRKVTRIAYSMVKQFGMAPS 633
Query: 124 IGLVSFPK-DDNRQSI--RPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL 175
IG VSFP+ + I RP+S+ L +MD EA L+A+ Y HTEKVL DN+DKL
Sbjct: 634 IGPVSFPEAQEGLVGIGRRPFSQGLQQMMDHEARLLVARAYRHTEKVLLDNLDKL 688
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 40/55 (72%), Gaps = 2/55 (3%)
Query: 7 NQMSRAKFTLVDPLVGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
NQ+ A+FT+VD G +GV F DVAG+ EAK+EV EFVDYLK PE + LGAK
Sbjct: 288 NQLKMARFTIVDGKTG--KGVSFQDVAGMHEAKLEVREFVDYLKSPERFLQLGAK 340
>sp|Q9UQ90|SPG7_HUMAN Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2
Length = 795
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/119 (54%), Positives = 88/119 (73%), Gaps = 3/119 (2%)
Query: 60 AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFG 119
A+ P +Q L+ KE+LF+RMCMALGGRA+EA+ FN +TSGAQ+DL+KVT +A ++QFG
Sbjct: 607 AQMLPRDQHLFTKEQLFERMCMALGGRASEALSFNEVTSGAQDDLRKVTRIAYSMVKQFG 666
Query: 120 MNENIGLVSFPK-DDNRQSI--RPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL 175
M IG +SFP+ + I RP+S+ L +MD EA L+A+ Y HTEKVL+DN+DKL
Sbjct: 667 MAPGIGPISFPEAQEGLMGIGRRPFSQGLQQMMDHEARLLVAKAYRHTEKVLQDNLDKL 725
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 41/55 (74%), Gaps = 2/55 (3%)
Query: 7 NQMSRAKFTLVDPLVGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
NQ+ A+FT+VD +G +GV F DVAG+ EAK+EV EFVDYLK PE + LGAK
Sbjct: 288 NQLKMARFTIVDGKMG--KGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAK 340
>sp|Q8JZQ2|AFG32_MOUSE AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1
Length = 802
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 84/128 (65%), Gaps = 5/128 (3%)
Query: 60 AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFG 119
A+Y P EQ LY KE+L DRMCM LGGR +E I F RIT+GAQ+DL+KVT+ A QI QFG
Sbjct: 605 AQYLPKEQYLYTKEQLLDRMCMTLGGRVSEEIFFGRITTGAQDDLRKVTQSAYAQIVQFG 664
Query: 120 MNENIGLVSF--PKDDNRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRD---NMDK 174
MNE +G +SF P+ + +PYS+ A ++D+E LI+ Y T +L + +++K
Sbjct: 665 MNEKVGQISFDLPRQGDMVLEKPYSEATARMIDDEVRILISDAYRRTVALLTEKKADVEK 724
Query: 175 LTLSFLSK 182
+ L L K
Sbjct: 725 VALLLLEK 732
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
VKF DVAG EAK+E+MEFV++LK P+ YQ+LGAK
Sbjct: 304 VKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAK 338
>sp|Q9Y4W6|AFG32_HUMAN AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2
Length = 797
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 83/128 (64%), Gaps = 5/128 (3%)
Query: 60 AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFG 119
A+Y P EQ LY KE+L DRMCM LGGR +E I F RIT+GAQ+DL+KVT+ A QI QFG
Sbjct: 606 AQYLPKEQYLYTKEQLLDRMCMTLGGRVSEEIFFGRITTGAQDDLRKVTQSAYAQIVQFG 665
Query: 120 MNENIGLVSF--PKDDNRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRD---NMDK 174
MNE +G +SF P+ + +PYS+ A L+D+E LI Y T +L + +++K
Sbjct: 666 MNEKVGQISFDLPRQGDMVLEKPYSEATARLIDDEVRILINDAYKRTVALLTEKKADVEK 725
Query: 175 LTLSFLSK 182
+ L L K
Sbjct: 726 VALLLLEK 733
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
VKF DVAG EAK+E+MEFV++LK P+ YQ+LGAK
Sbjct: 305 VKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAK 339
>sp|Q2KJI7|AFG32_BOVIN AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 SV=1
Length = 805
Score = 116 bits (291), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 83/128 (64%), Gaps = 5/128 (3%)
Query: 60 AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFG 119
A+Y P EQ LY +E+L DRMCM LGGR +E I F RIT+GAQ+DL+KVT+ A QI QFG
Sbjct: 607 AQYLPREQYLYTREQLLDRMCMTLGGRVSEEIFFGRITTGAQDDLRKVTQSAYAQIVQFG 666
Query: 120 MNENIGLVSF--PKDDNRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRD---NMDK 174
MNE +G +SF P+ + +PYS+ A L+D+E LI Y T +L + +++K
Sbjct: 667 MNEKVGQISFDLPRQGDMVLEKPYSEATARLIDDEVRILINDAYKRTVALLTEKKADVEK 726
Query: 175 LTLSFLSK 182
+ L L K
Sbjct: 727 VALLLLEK 734
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
VKF DVAG EAK+E+MEFV++LK P+ YQ+LGAK
Sbjct: 306 VKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAK 340
>sp|Q920A7|AFG31_MOUSE AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2 SV=2
Length = 789
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 83/128 (64%), Gaps = 5/128 (3%)
Query: 60 AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFG 119
A+Y P EQ LY +E+LFDRMCM LGGR AE + F +IT+GAQ+DL+KVT+ A QI QFG
Sbjct: 598 AQYLPREQFLYTREQLFDRMCMMLGGRVAEQLFFGQITTGAQDDLRKVTQSAYAQIVQFG 657
Query: 120 MNENIGLVS--FPKDDNRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVL---RDNMDK 174
M+E +G VS FP+ +PYS+ A L+DEE L+ Y T ++L R+ ++K
Sbjct: 658 MSEKLGQVSFDFPRQGETMVEKPYSEATAQLIDEEVRCLVRSAYNRTLELLTQCREQVEK 717
Query: 175 LTLSFLSK 182
+ L K
Sbjct: 718 VGRRLLEK 725
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 31/35 (88%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
V+F+DVAG EAK+E+MEFV++LK P+ YQ+LGAK
Sbjct: 297 VRFADVAGCEEAKLEIMEFVNFLKNPKQYQDLGAK 331
>sp|Q0DHL4|FTSH8_ORYSJ ATP-dependent zinc metalloprotease FTSH 8, mitochondrial OS=Oryza
sativa subsp. japonica GN=FTSH8 PE=3 SV=1
Length = 822
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 82/117 (70%), Gaps = 1/117 (0%)
Query: 60 AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFG 119
A+Y P+E L KE+LFD CM LGGRAAE ++ RI++GAQNDL+KVT+M Q+ +G
Sbjct: 633 AQYVPNENLLMTKEQLFDMTCMTLGGRAAEEVLIGRISTGAQNDLEKVTKMTYAQVAVYG 692
Query: 120 MNENIGLVSFP-KDDNRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL 175
+E +GL+SFP +DD + +PYS + A+++D+E + + + Y T +++ ++ +++
Sbjct: 693 FSEKVGLLSFPQRDDGFEMTKPYSNQTASIIDDEVREWVGKAYKKTVELITEHKEQV 749
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 26/35 (74%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
V F DVAG EAK E+MEFV +LK P+ Y+ LGAK
Sbjct: 332 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAK 366
>sp|Q8VZI8|FTSHA_ARATH ATP-dependent zinc metalloprotease FTSH 10, mitochondrial
OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1
Length = 813
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 81/117 (69%), Gaps = 1/117 (0%)
Query: 60 AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFG 119
A+Y P+E L KE+LFD CM LGGRAAE ++ RI++GAQNDL+KVT+M Q+ +G
Sbjct: 625 AQYVPNENLLMTKEQLFDMTCMTLGGRAAEQVLIGRISTGAQNDLEKVTKMTYAQVAVYG 684
Query: 120 MNENIGLVSFPKDDNRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKLT 176
++ IGL+SFP+ ++ S +PYS R A++DEE + + + Y T +++ ++ +++
Sbjct: 685 FSDKIGLLSFPQREDEFS-KPYSNRTGAMIDEEVREWVGKAYKRTVELIEEHKEQVA 740
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
+ F DVAG EAK E+MEFV +L+ P+ Y++LGAK
Sbjct: 324 IYFKDVAGCEEAKQEIMEFVHFLQNPKKYEDLGAK 358
>sp|Q84WU8|FTSH3_ARATH ATP-dependent zinc metalloprotease FTSH 3, mitochondrial
OS=Arabidopsis thaliana GN=FTSH3 PE=1 SV=1
Length = 809
Score = 110 bits (274), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 79/117 (67%), Gaps = 1/117 (0%)
Query: 60 AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFG 119
A+Y P+E L KE+LFD CM LGGRAAE ++ +I++GAQNDL+KVT+M Q+ +G
Sbjct: 619 AQYVPNENLLMTKEQLFDMTCMTLGGRAAEQVLIGKISTGAQNDLEKVTKMTYAQVAVYG 678
Query: 120 MNENIGLVSF-PKDDNRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL 175
++ +GL+SF P+DD +PYS + A++DEE +A+ Y T +++ ++ K+
Sbjct: 679 FSDKVGLLSFPPRDDGYDFSKPYSNKTGAIIDEEVRDWVAKAYERTVELVEEHKVKV 735
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 27/35 (77%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
+ F DVAG EAK E+MEFV +LK P+ Y++LGAK
Sbjct: 319 IYFKDVAGCDEAKQEIMEFVHFLKNPKKYEDLGAK 353
>sp|Q8S2A7|FTSH3_ORYSJ ATP-dependent zinc metalloprotease FTSH 3, mitochondrial OS=Oryza
sativa subsp. japonica GN=FTSH3 PE=3 SV=1
Length = 802
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 82/117 (70%), Gaps = 1/117 (0%)
Query: 60 AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFG 119
A+Y P++ L KE+LFD CM LGGRAAE ++ +I++GAQNDL+KVT+M Q+ +G
Sbjct: 618 AQYVPNDNLLMTKEQLFDMTCMTLGGRAAEEVLIGKISTGAQNDLEKVTKMTYAQVAVYG 677
Query: 120 MNENIGLVSFP-KDDNRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL 175
+E +GL+SFP ++D + +PYS + A+++D E + +A+ Y T ++++ + D++
Sbjct: 678 FSEKVGLLSFPQREDGFEMSKPYSSQTASIIDTEVREWVAKAYEKTVELIKQHKDQV 734
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 26/35 (74%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
V F DVAG EAK E+MEFV +LK P+ Y+ LGAK
Sbjct: 317 VFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAK 351
>sp|D0MGU8|FTSH_RHOM4 ATP-dependent zinc metalloprotease FtsH OS=Rhodothermus marinus
(strain ATCC 43812 / DSM 4252 / R-10) GN=ftsH PE=3 SV=1
Length = 697
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 76/120 (63%), Gaps = 4/120 (3%)
Query: 60 AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFG 119
A+Y P E+ LY KE L DRM MA+GGR AE +VF RI++GAQNDL+++T MA + +G
Sbjct: 507 AQYLPEERYLYTKEALLDRMTMAIGGRVAEELVFGRISTGAQNDLERITRMAYAMVVDYG 566
Query: 120 MNENIGLVSF--PKDDNRQSI--RPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL 175
M+E +G VSF Q+ +PYS+ A L+DEE ++I + ++L + DKL
Sbjct: 567 MSERVGYVSFNLSGQYGEQAFFDKPYSEETARLIDEEVRRIINEVRERARRILEEKRDKL 626
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 23 GGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
G V F DVAGL EAK EV E V++LK P+ + LG K
Sbjct: 204 GDHRVTFKDVAGLDEAKEEVAEIVEFLKNPKKFTRLGGK 242
>sp|D5H7Z5|FTSH1_SALRM ATP-dependent zinc metalloprotease FtsH 1 OS=Salinibacter ruber
(strain M8) GN=ftsH1 PE=3 SV=1
Length = 686
Score = 97.4 bits (241), Expect = 4e-20, Method: Composition-based stats.
Identities = 47/115 (40%), Positives = 74/115 (64%), Gaps = 4/115 (3%)
Query: 60 AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFG 119
A++ P E+ LY++E L DRM MALGGR AE IVF R T+GA++DL++VTE A + +G
Sbjct: 512 AQHLPKERDLYSREALMDRMTMALGGRGAEEIVFGRATTGAKDDLERVTETAYAMVVDYG 571
Query: 120 MNENIGLVSFPKDDNRQS----IRPYSKRLAALMDEEASKLIAQCYMHTEKVLRD 170
M++ IG +S+ + + R +PYS +AA +DEE + ++ + +LR+
Sbjct: 572 MSDRIGPLSYNRAERRADGPLFEKPYSDAMAAAIDEEVADIVREARARANDLLRE 626
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 22 GGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGA 60
GGR V F DVAGL E K EV E V++L+RP+ + LG
Sbjct: 209 AGGRRVTFDDVAGLAEPKEEVAEVVEFLRRPQKFTRLGG 247
>sp|Q9HGM3|YTA12_SCHPO Mitochondrial respiratory chain complexes assembly protein rca1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=yta12 PE=3 SV=1
Length = 773
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 82/139 (58%), Gaps = 6/139 (4%)
Query: 43 MEFVDYLKRPEYY---QNLG-AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFN--RI 96
ME+VD L + Q LG A Y P +Q L ++ ++ D+M MAL GR +E I F +I
Sbjct: 572 MEYVDPLLKVSIIPRAQALGYASYLPKDQYLMSRGQILDQMGMALAGRVSEEIFFGPEKI 631
Query: 97 TSGAQNDLKKVTEMANMQIRQFGMNENIGLVSFPKDDNRQSIRPYSKRLAALMDEEASKL 156
TSGA +D +KVT MA + Q+GM+ +G +++P D +P+S+ A ++DEE KL
Sbjct: 632 TSGASDDFQKVTRMAQAYVTQYGMSPTVGTIAYPIDTRETVQKPFSEATAQMIDEEIRKL 691
Query: 157 IAQCYMHTEKVLRDNMDKL 175
+ Y T+K+L ++ L
Sbjct: 692 VKHAYERTKKLLLEHKQGL 710
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
+KF+DVAG+ EAK E+MEFV +LK P++Y+ LGAK
Sbjct: 293 IKFADVAGVDEAKEEIMEFVKFLKNPKFYERLGAK 327
>sp|P39925|AFG3_YEAST Mitochondrial respiratory chain complexes assembly protein AFG3
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=AFG3 PE=1 SV=1
Length = 761
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 73/119 (61%), Gaps = 1/119 (0%)
Query: 60 AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFG 119
A+Y P +Q L ++E+ RM MALGGR +E + F +TSGA +D KKVT+MAN + G
Sbjct: 591 AQYLPPDQYLISEEQFRHRMIMALGGRVSEELHFPSVTSGAHDDFKKVTQMANAMVTSLG 650
Query: 120 MNENIGLVSFPKDD-NRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKLTL 177
M+ IG +SF ++D N + +P+S + A +D E ++ + ++L N+DK+ L
Sbjct: 651 MSPKIGYLSFDQNDGNFKVNKPFSNKTARTIDLEVKSIVDDAHRACTELLTKNLDKVDL 709
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
+ F +VAG EAK E+MEFV +LK P Y LGAK
Sbjct: 285 ISFKNVAGCDEAKQEIMEFVHFLKNPGKYTKLGAK 319
>sp|P40341|YTA12_YEAST Mitochondrial respiratory chain complexes assembly protein YTA12
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=YTA12 PE=1 SV=2
Length = 825
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 76/126 (60%), Gaps = 3/126 (2%)
Query: 60 AKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFG 119
A+Y P + L +++L DRM M+LGGR +E + F +TSGA +D KKVT MA + + G
Sbjct: 646 AQYLPGDIFLLTEQQLKDRMTMSLGGRVSEELHFPSVTSGASDDFKKVTSMATAMVTELG 705
Query: 120 MNENIGLVSFPKDDNRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLR---DNMDKLT 176
M++ IG V++ K D+ +P+S ++D E +++ +C+ K+L+ ++++K+
Sbjct: 706 MSDKIGWVNYQKRDDSDLTKPFSDETGDIIDSEVYRIVQECHDRCTKLLKEKAEDVEKIA 765
Query: 177 LSFLSK 182
L K
Sbjct: 766 QVLLKK 771
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 26/35 (74%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
+KF DVAG EAK E+MEFV +LK P Y+ +GAK
Sbjct: 345 IKFKDVAGCDEAKEEIMEFVSFLKEPSRYEKMGAK 379
>sp|A9BJK3|FTSH3_PETMO ATP-dependent zinc metalloprotease FtsH 3 OS=Petrotoga mobilis
(strain DSM 10674 / SJ95) GN=ftsH3 PE=3 SV=1
Length = 645
Score = 90.1 bits (222), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 77/135 (57%), Gaps = 13/135 (9%)
Query: 52 PEYYQNLGAKYT---PSEQK-LYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKV 107
P Y LG YT PSE + L NK E+ D + + L GRAAE I+F+ ITSGA+NDLK+
Sbjct: 448 PRGYAALG--YTLQLPSEDRYLMNKSEILDDIAVMLAGRAAEEIIFDEITSGAENDLKRA 505
Query: 108 TEMANMQIRQFGMNENIGLVSFPKDDN-----RQSIRP--YSKRLAALMDEEASKLIAQC 160
TEMA + FGM+E IG V++ + R+ R YS A +D E ++I +
Sbjct: 506 TEMARRMVESFGMSEKIGPVAWASESEETFLARELFREKNYSDETAKELDSEVKQIINKS 565
Query: 161 YMHTEKVLRDNMDKL 175
Y + VL +N +KL
Sbjct: 566 YEKAKSVLLENKEKL 580
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 29 FSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
F+DVAG++EAK E+ + V +LK P+ + LGA+
Sbjct: 161 FNDVAGVKEAKEELTDVVKFLKDPKVFNRLGAR 193
>sp|D1CDT8|FTSH_THET1 ATP-dependent zinc metalloprotease FtsH OS=Thermobaculum terrenum
(strain ATCC BAA-798 / YNP1) GN=ftsH PE=3 SV=1
Length = 646
Score = 89.4 bits (220), Expect = 1e-17, Method: Composition-based stats.
Identities = 53/137 (38%), Positives = 76/137 (55%), Gaps = 12/137 (8%)
Query: 56 QNLGAKYTPSEQKLYNKEE--LFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANM 113
Q LG Y E YN E L R+ ALGGRAAE +VF +T+GA+NDLK+VTE+A
Sbjct: 486 QALGVTYQTPEDDRYNYTERYLRSRITAALGGRAAEELVFGTVTTGAENDLKQVTEIARQ 545
Query: 114 QIRQFGMNENIGLVSFPKDD-------NRQSIRPYSKRLAALMDEEASKLIAQCYMHTEK 166
+ ++GM++ +GLV D N + R YS+ LA ++D E ++I +CY
Sbjct: 546 MVTRWGMSKEVGLVYLSPDGQEDFLGPNPITSREYSESLATVIDRETRRIIDECYAEALS 605
Query: 167 VL---RDNMDKLTLSFL 180
+L R +D L + L
Sbjct: 606 LLNRERQRLDNLAEALL 622
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGA 60
V F DVAG+ EAK E+ E VD+LK P+ YQ LG
Sbjct: 194 VTFDDVAGIEEAKQELAEIVDFLKNPQKYQRLGG 227
>sp|Q9WZ49|FTSH_THEMA ATP-dependent zinc metalloprotease FtsH OS=Thermotoga maritima
(strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
GN=ftsH PE=1 SV=1
Length = 610
Score = 89.0 bits (219), Expect = 2e-17, Method: Composition-based stats.
Identities = 47/133 (35%), Positives = 79/133 (59%), Gaps = 9/133 (6%)
Query: 52 PEYYQNLGAK-YTPSEQK-LYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTE 109
P Y+ LG + P E K L ++ EL D++ LGGRAAE +VF +TSGA ND+++ TE
Sbjct: 447 PRGYKALGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATE 506
Query: 110 MANMQIRQFGMNENIGLVSFPKDDNR-------QSIRPYSKRLAALMDEEASKLIAQCYM 162
+A + Q GM+E +G +++ K++ +R YS+ +A+ +DEE K++ CY
Sbjct: 507 IARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYE 566
Query: 163 HTEKVLRDNMDKL 175
++++R +L
Sbjct: 567 RAKEIIRKYRKQL 579
Score = 37.4 bits (85), Expect = 0.051, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 4 GFQNQ---MSRAKFTLVDPLVGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGA 60
G NQ ++++ T+ P G + V F DV G EA E+ E V++LK P + +GA
Sbjct: 134 GRNNQAFTFTKSRATMYKP--SGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGA 191
Query: 61 K 61
+
Sbjct: 192 R 192
>sp|Q67JH0|FTSH3_SYMTH ATP-dependent zinc metalloprotease FtsH 3 OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ftsH3 PE=3 SV=1
Length = 626
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 78/133 (58%), Gaps = 13/133 (9%)
Query: 62 YTPSEQKLYN--KEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFG 119
+ P E + YN K E+ DRM MALGGRAAE I F ITSGAQ+D+++ T+ A + ++G
Sbjct: 454 FLPVEDR-YNISKSEILDRMTMALGGRAAEEITFGEITSGAQDDIERTTQWARRMVTEWG 512
Query: 120 MNENIGLVSFP-KDD------NRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVL---R 169
M+E +G +++ K D + +R YS+ +A L+DEE K + Y +L R
Sbjct: 513 MSEKLGPLTYGMKQDEVFLARDMTRLRNYSEEVAGLIDEEVRKFVHMAYQRAIDILTEHR 572
Query: 170 DNMDKLTLSFLSK 182
D ++K++ L K
Sbjct: 573 DALEKVSEVLLEK 585
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
V F DVAG+ E K E+ E VD+LK P+ Y LGA+
Sbjct: 154 VTFDDVAGIDEVKEELAEIVDFLKHPKRYLELGAR 188
>sp|A6TWP7|FTSH2_ALKMQ ATP-dependent zinc metalloprotease FtsH 2 OS=Alkaliphilus
metalliredigens (strain QYMF) GN=ftsH2 PE=3 SV=1
Length = 689
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 75/122 (61%), Gaps = 8/122 (6%)
Query: 64 PSEQKLY-NKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNE 122
P+E K Y K E+ + + LGGR AE +V + I++GA NDL++V+ +A + Q+GM++
Sbjct: 463 PTEDKYYVTKTEMQEHIVHLLGGRVAEKLVLHDISTGASNDLQRVSSIARAMVTQYGMSD 522
Query: 123 NIGLVSFPKDDNR-------QSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL 175
+G ++F D+ S YS+ +AA +D+E K + + YM TEK+L +NMDKL
Sbjct: 523 KLGSMTFGDGDSEVFLGRDFTSKHNYSEEVAAEIDQEIRKFVEEAYMLTEKLLTENMDKL 582
Query: 176 TL 177
+
Sbjct: 583 HV 584
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%)
Query: 24 GRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
G+ + F DVAGL E K EV E VD+LK P+ Y LGA+
Sbjct: 159 GKRITFDDVAGLDEEKAEVEELVDFLKNPKKYIELGAR 196
>sp|B8D065|FTSH_HALOH ATP-dependent zinc metalloprotease FtsH OS=Halothermothrix orenii
(strain H 168 / OCM 544 / DSM 9562) GN=ftsH PE=3 SV=1
Length = 630
Score = 86.7 bits (213), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 78/123 (63%), Gaps = 13/123 (10%)
Query: 64 PSEQKLY-NKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNE 122
P E K + +K+EL D++ + LGGRA+E+I I++GAQNDL++ T++A + ++GM+E
Sbjct: 461 PKEDKNFMSKQELLDQITVLLGGRASESIFLEDISTGAQNDLERATKLARAMVTEYGMSE 520
Query: 123 NIGLVS----------FPKDDNRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNM 172
+G ++ +D +RQ R YS+ +AA +D+E S +I CY EK+L++N
Sbjct: 521 KLGPLTLGHKHDEQIFLGRDISRQ--RNYSEEIAAEIDKEVSSIIEYCYQRAEKILQENT 578
Query: 173 DKL 175
K+
Sbjct: 579 AKV 581
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 24 GRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
G+ V F DVA E K E+ E V++LK P+ + +GAK
Sbjct: 157 GKKVTFEDVANYEEVKEELQEVVEFLKNPDKFTRMGAK 194
>sp|B0K5A3|FTSH1_THEPX ATP-dependent zinc metalloprotease FtsH 1 OS=Thermoanaerobacter sp.
(strain X514) GN=ftsH1 PE=3 SV=1
Length = 611
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 74/122 (60%), Gaps = 12/122 (9%)
Query: 64 PSEQKLY-NKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNE 122
P E K Y +K E+ D + LGGR AE++V N I++GAQND+++ T +A + ++GM+E
Sbjct: 459 PEEDKYYMSKSEMMDEIVHLLGGRVAESLVLNDISTGAQNDIERATNIARKMVTEYGMSE 518
Query: 123 NIGLVSF---------PKDDNRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMD 173
+G ++F +D R R YS+ +AA +D E ++I + Y E +L++N+D
Sbjct: 519 RLGPMTFGTKSEEVFLGRDLGRT--RNYSEEVAAEIDREIKRIIEEAYKRAESLLKENID 576
Query: 174 KL 175
KL
Sbjct: 577 KL 578
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
V F+DVAG E K E+ E V++LK P+ + LGA+
Sbjct: 158 VTFNDVAGADEEKEELQEIVEFLKYPKKFLELGAR 192
>sp|A6LD25|FTSH_PARD8 ATP-dependent zinc metalloprotease FtsH OS=Parabacteroides
distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
GN=ftsH PE=3 SV=1
Length = 684
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 71/116 (61%), Gaps = 4/116 (3%)
Query: 59 GAKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQF 118
A Y P E+++ +E+L D MC LGGRAAE +V +I++GA NDL++VT+ A + F
Sbjct: 490 AAWYLPEERQITTREQLQDEMCATLGGRAAEELVLGKISTGASNDLERVTKQAYAMVVYF 549
Query: 119 GMNENIGLVSFPKDDNRQS---IRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDN 171
GM++ + +++ D Q +PYS+ A L+D E K+I + Y +++L +N
Sbjct: 550 GMSDKLPNLNY-YDSTGQDWGFTKPYSEETAKLIDTEVQKIINEQYDRAKRILSEN 604
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 24/37 (64%)
Query: 25 RGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
R V F DVAGL EAK EV E V +LK PE Y LG K
Sbjct: 191 RKVTFKDVAGLAEAKQEVEEIVSFLKNPEKYTELGGK 227
>sp|D5D8E3|FTSH_SULMD ATP-dependent zinc metalloprotease FtsH OS=Sulcia muelleri (strain
DMIN) GN=ftsH PE=3 SV=1
Length = 619
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 80/126 (63%), Gaps = 5/126 (3%)
Query: 56 QNLGAK-YTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQ 114
Q+LGA Y P E+++ ++++ D +C LGGRAAE ++FN ++GA NDL+++T+ A
Sbjct: 474 QSLGAAWYIPEERQITTEDQMKDEICTLLGGRAAEYLIFNNKSTGALNDLERITKQAQSM 533
Query: 115 IRQFGMNENIGLVSFPKDDNRQSI---RPYSKRLAALMDEEASKLIAQCYMHTEKVLRDN 171
++ FG++ ++G +S+ R + YS++ + ++D+E +K+I + Y ++L+ N
Sbjct: 534 VKFFGLS-SLGNISYFDSTGRNDFSLEKAYSEKTSEIIDKEINKIIKEQYKRALEILKKN 592
Query: 172 MDKLTL 177
DKL
Sbjct: 593 YDKLIF 598
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
+ F DVAGL K E+ E VD+LK P Y LG K
Sbjct: 181 ITFKDVAGLEGPKEEIKEIVDFLKSPNKYTKLGGK 215
>sp|C5CES8|FTSH_KOSOT ATP-dependent zinc metalloprotease FtsH OS=Kosmotoga olearia
(strain TBF 19.5.1) GN=ftsH PE=3 SV=1
Length = 645
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 73/122 (59%), Gaps = 11/122 (9%)
Query: 64 PSEQK-LYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNE 122
PSE + L ++ E+ D + LGGRAAE IVF IT+GA NDL++ T+MA + Q GM++
Sbjct: 463 PSEDRYLVSRSEMLDNLAQILGGRAAEEIVFGEITTGAANDLERATQMARTMVCQLGMSD 522
Query: 123 NIGLVSFPKDDNR-------QSIRPYSKRLAALMDEEASKLIAQCYMHTEKVL---RDNM 172
+G +++ K++ +R YS+ +A+ +D E K++ + + K++ RD +
Sbjct: 523 RLGPIAWGKEEGEVFLGRELTRMRNYSEEIASEIDNEVKKIVIEAHERARKLVEKFRDKL 582
Query: 173 DK 174
DK
Sbjct: 583 DK 584
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 25 RGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
+ V F DVAG+ EA E+ + V+YLK P + GA+
Sbjct: 159 KNVTFKDVAGVDEAIEELQDAVNYLKNPNAFSQTGAR 195
>sp|B8I4B9|FTSH_CLOCE ATP-dependent zinc metalloprotease FtsH OS=Clostridium
cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584
/ H10) GN=ftsH PE=3 SV=1
Length = 619
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 72/120 (60%), Gaps = 8/120 (6%)
Query: 64 PSEQKLYN-KEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNE 122
P E K Y+ + +L + + +ALGGRAAE I + +++GA +DLKKV ++A + ++GM+E
Sbjct: 462 PQEDKSYHTRSQLIEEIIIALGGRAAEEITMDEVSTGASSDLKKVNQIARNMVTKYGMSE 521
Query: 123 NIGLVSFPKDDNRQSI-------RPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL 175
+G + F D++ I R YS LAA++D E +I Y T +LR+N+ +L
Sbjct: 522 KLGNMIFGNDNDEVFIGRDLAQARNYSDELAAIIDNEVKSIIDNAYQKTVSLLRENIVRL 581
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 10 SRAKFTLVDPLVGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
SRAK T+ D + + F +VAG E K E+ E V++LK P+ + LGA+
Sbjct: 149 SRAKMTVDDK-----KKITFENVAGADEEKEELAEIVEFLKAPKKFVELGAR 195
>sp|A8F7F7|FTSH_THELT ATP-dependent zinc metalloprotease FtsH OS=Thermotoga lettingae
(strain ATCC BAA-301 / DSM 14385 / TMO) GN=ftsH PE=3
SV=1
Length = 626
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 78/128 (60%), Gaps = 13/128 (10%)
Query: 52 PEYYQNLGAKYT---PSEQK-LYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKV 107
P Y+ LG YT P+E + L K+EL D++ LGGRAAE ++F +T+GA +D+++
Sbjct: 448 PRGYRALG--YTLQLPAEDRYLVTKQELLDQITGLLGGRAAEELIFQEVTTGAASDIERA 505
Query: 108 TEMANMQIRQFGMNENIGLVSFPKDDNR-------QSIRPYSKRLAALMDEEASKLIAQC 160
TE+A + QFGM++ +G +S+ K + +R YS+ +A+ +DEE K++ +
Sbjct: 506 TELARRMVCQFGMSDKLGPLSWGKTEQEIFLGKELTRMRNYSEEVASEIDEEVRKIVTES 565
Query: 161 YMHTEKVL 168
Y +++L
Sbjct: 566 YDRAKEIL 573
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
V F DVAG+ EA E+ E V +LK P + +GA+
Sbjct: 159 VTFKDVAGVDEAVEELKETVLFLKDPGRFSKIGAR 193
>sp|P37476|FTSH_BACSU ATP-dependent zinc metalloprotease FtsH OS=Bacillus subtilis
(strain 168) GN=ftsH PE=1 SV=1
Length = 637
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 64 PSEQKLY-NKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNE 122
P E + + K EL D++ LGGR AE I+F +++GA ND ++ T +A + +FGM+E
Sbjct: 459 PREDRYFQTKPELLDKIVGLLGGRVAEEIIFGEVSTGAHNDFQRATNIARRMVTEFGMSE 518
Query: 123 NIGLVSFPKDDNRQSI--------RPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDK 174
+G + F + Q + YS ++A +D+E ++I +CY +++L +N DK
Sbjct: 519 KLGPLQFGQSQGGQVFLGRDFNNEQNYSDQIAYEIDQEIQRIIKECYERAKQILTENRDK 578
Query: 175 LTL 177
L L
Sbjct: 579 LEL 581
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
VKF DVAG E K E++E V++LK P + LGA+
Sbjct: 158 VKFKDVAGADEEKQELVEVVEFLKDPRKFAELGAR 192
>sp|Q0TTK8|FTSH_CLOP1 ATP-dependent zinc metalloprotease FtsH OS=Clostridium perfringens
(strain ATCC 13124 / NCTC 8237 / Type A) GN=ftsH PE=3
SV=1
Length = 717
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 78/127 (61%), Gaps = 8/127 (6%)
Query: 64 PSEQK-LYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNE 122
P E+K L +KEE+ D++ + LGGRAAE +VFN IT+GA ND+++ T+ A I +GM+E
Sbjct: 464 PEEEKYLVSKEEMIDQISVMLGGRAAEEVVFNSITTGASNDIERATQSARNMITIYGMSE 523
Query: 123 NIGLVSFPKDDNR----QSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDN---MDKL 175
+++ NR + +R S+ AA+ DEE ++I + + + K+L +N +D++
Sbjct: 524 RFDMMALEAMSNRYLDGRPVRNCSETTAAIADEEVLQVIKKAHEKSIKILIENRELLDEI 583
Query: 176 TLSFLSK 182
T L K
Sbjct: 584 TGVLLDK 590
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 26 GVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
G+ F DVAG EAK ++E VD+L Y +GAK
Sbjct: 162 GITFKDVAGQDEAKESLVEIVDFLHDTRKYVEIGAK 197
>sp|Q1D491|FTSH_MYXXD ATP-dependent zinc metalloprotease FtsH OS=Myxococcus xanthus
(strain DK 1622) GN=ftsH PE=3 SV=1
Length = 638
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 77/129 (59%), Gaps = 9/129 (6%)
Query: 56 QNLGAKYT-PSEQKLYN-KEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANM 113
Q LG ++ P+E K+ K+++ D++ MA+GGR AE ++FN ++SGA ND+++ TE A
Sbjct: 444 QALGVTWSLPTEDKVNGYKKQMLDQISMAMGGRIAEELMFNEMSSGAANDIERATETARA 503
Query: 114 QIRQFGMNENIGLVSFPKDDNR-------QSIRPYSKRLAALMDEEASKLIAQCYMHTEK 166
+ ++GM+E +G ++F K D S + YS+ A +D E ++ CY +
Sbjct: 504 MVCRWGMSEKMGPLAFGKSDGEVFLGRDFNSSKDYSEDTARQIDAEVRNIVVGCYERGKN 563
Query: 167 VLRDNMDKL 175
+L +N++ L
Sbjct: 564 LLTENIEAL 572
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
V F+DVAG E K E+ E V +LK P+ + LG +
Sbjct: 152 VTFADVAGADECKEELEEIVAFLKDPKKFTKLGGR 186
>sp|B2UMY1|FTSH_AKKM8 ATP-dependent zinc metalloprotease FtsH OS=Akkermansia muciniphila
(strain ATCC BAA-835) GN=ftsH PE=3 SV=1
Length = 812
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 9/125 (7%)
Query: 62 YTPSEQKLYN-KEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGM 120
+ PS+ K++ + E+ D++ +A+GGR AE IVF +TSGA D+K T +A + +FGM
Sbjct: 589 WLPSDDKMHQLRSEMLDQLVVAMGGRCAEQIVFGDVTSGATGDIKSATNLARRMVCEFGM 648
Query: 121 NENIGLVSFPKDDNRQSI--------RPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNM 172
+E +GL+ + + I R YS+ A L+D E L+ Y +L +N
Sbjct: 649 SEKLGLIEYGEHQGEVYIARDLGTRSRNYSESTAELIDSEVRFLVDSAYERAMAILTENR 708
Query: 173 DKLTL 177
DKL +
Sbjct: 709 DKLDI 713
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGA 60
V F DVAG+ EAK EV E V++L+ PE +++LGA
Sbjct: 290 VTFKDVAGISEAKEEVWELVEFLRNPEKFRDLGA 323
>sp|B2UE66|FTSH_RALPJ ATP-dependent zinc metalloprotease FtsH OS=Ralstonia pickettii
(strain 12J) GN=ftsH PE=3 SV=1
Length = 714
Score = 80.5 bits (197), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 14/145 (9%)
Query: 52 PEYYQNLG-AKYTPSEQK-LYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTE 109
P LG + TP+E + L + EL DR+ + LGGR AE ++F +++GAQNDL++ T+
Sbjct: 526 PRGVAALGYTQQTPTEDRYLLKRSELLDRLDVLLGGRIAEQLIFGDVSTGAQNDLQRATD 585
Query: 110 MANMQIRQFGMNENIGLVSFPKDDN---------RQSIRPYSKRLAALMDEEASKLIAQC 160
MA I QFGM++ +GL ++ N ++ YS+ A ++D E KL+A+
Sbjct: 586 MARQMITQFGMSDQLGLATYENMPNPLFAGTGLMQRERNEYSESTAQMIDAEVRKLLAEA 645
Query: 161 YMHTEKVL---RDNMDKLTLSFLSK 182
+ L R +D L L K
Sbjct: 646 SHRVQATLEGQRTKLDALAQLLLEK 670
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 26 GVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
GV F+DVAG+ EAK E+ E V +LK P+ YQ LG K
Sbjct: 236 GVTFADVAGIDEAKEELSEIVSFLKDPQRYQRLGGK 271
>sp|P72991|FTSH3_SYNY3 ATP-dependent zinc metalloprotease FtsH 3 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=ftsH3 PE=1 SV=1
Length = 616
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 79/137 (57%), Gaps = 16/137 (11%)
Query: 62 YTPSEQK----LYNKEELFDRMCMALGGRAAEAIVFNR--ITSGAQNDLKKVTEMANMQI 115
+TPSE + LY++ L ++M +ALGGR AE I+F +T+GA NDL++V +A +
Sbjct: 457 FTPSEDRMESGLYSRSYLQNQMAVALGGRIAEEIIFGEEEVTTGASNDLQQVARVARQMV 516
Query: 116 RQFGMNENIGLVSFPKDD-------NRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVL 168
+FGM++ +G V+ + + S R +S AA +DEE S+L+ Q Y ++VL
Sbjct: 517 TRFGMSDRLGPVALGRQGGGVFLGRDIASDRDFSDETAAAIDEEVSQLVDQAYQRAKQVL 576
Query: 169 RDN---MDKLTLSFLSK 182
+N +D+L + K
Sbjct: 577 VENRGILDQLAEILVEK 593
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
V F DVAG+ +AK+E+ E VD+LK + + LGAK
Sbjct: 158 VTFGDVAGIEQAKLELTEVVDFLKNADRFTELGAK 192
>sp|Q3JMH0|FTSH_BURP1 ATP-dependent zinc metalloprotease FtsH OS=Burkholderia
pseudomallei (strain 1710b) GN=ftsH PE=3 SV=2
Length = 666
Score = 79.0 bits (193), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/117 (35%), Positives = 70/117 (59%), Gaps = 11/117 (9%)
Query: 64 PSEQK-LYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNE 122
P+E + + K EL DR+ + LGGR AE IVF +++GA+NDL++ TEMA + ++GM+E
Sbjct: 469 PTEDRYVLRKSELLDRLDVLLGGRVAEEIVFGDVSTGAENDLERATEMARHMVARYGMSE 528
Query: 123 NIGLVSFPKDDNRQSIRPY---------SKRLAALMDEEASKLIAQCYMHTEKVLRD 170
IGL +F D + Q + P S+ A +D+E +L+A+ + + L++
Sbjct: 529 RIGLATF-GDADTQGLSPLVWQRGGERCSESTATRIDDEIQRLLAEAHDRVSRTLKE 584
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 26 GVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
G+ F D+AG+ EAK E+ + V +L+ P YQ LG K
Sbjct: 166 GIDFDDIAGIDEAKAELQQIVAFLRAPARYQRLGGK 201
>sp|P51327|FTSH_PORPU ATP-dependent zinc metalloprotease FtsH OS=Porphyra purpurea
GN=ftsH PE=3 SV=1
Length = 628
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 77/128 (60%), Gaps = 14/128 (10%)
Query: 62 YTPSE-QKLYNKEELFDRMCMALGGRAAEAIVFN--RITSGAQNDLKKVTEMANMQIRQF 118
+TPS+ Q L ++ ++ R+ ALGGRAAE I+F +T+GA NDL++VT MA + +F
Sbjct: 468 FTPSDDQSLISRSQILARIVGALGGRAAEEIIFGDAEVTTGASNDLQQVTSMARQMVTRF 527
Query: 119 GMNENIGLVSFPKDDNRQSI-------RPYSKRLAALMDEEASKLIAQCYMHTEKVLRDN 171
GM++ IG +S + + YS +A +D++ +++++CY +K+++DN
Sbjct: 528 GMSK-IGPLSLESQGSDPFLGRGMGGGSEYSDEVATNIDKQVREIVSECYKEAKKIVKDN 586
Query: 172 ---MDKLT 176
MD+L
Sbjct: 587 RVVMDRLV 594
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 26 GVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
GV F+DVAG+ EAK E E V +LK+PE + +GAK
Sbjct: 169 GVVFNDVAGVEEAKEEFQEVVTFLKQPESFTAVGAK 204
>sp|O78516|FTSH_GUITH ATP-dependent zinc metalloprotease FtsH OS=Guillardia theta GN=ftsH
PE=3 SV=1
Length = 631
Score = 77.4 bits (189), Expect = 5e-14, Method: Composition-based stats.
Identities = 48/134 (35%), Positives = 78/134 (58%), Gaps = 14/134 (10%)
Query: 62 YTPSE-QKLYNKEELFDRMCMALGGRAAEAIVFN--RITSGAQNDLKKVTEMANMQIRQF 118
+TPSE Q L ++ ++ R+ ALGGRAAE +VF +T+GA NDL++VT MA + +F
Sbjct: 468 FTPSEDQSLISRSQILARIMGALGGRAAEEVVFGLPEVTTGAGNDLQQVTSMARQMVTRF 527
Query: 119 GMNENIGLVSFPKDDNRQ-------SIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDN 171
GM+ NIG +S ++ S YS+ +A+ +D + +I C+ T ++++DN
Sbjct: 528 GMS-NIGPLSLESQNSDPFLGRTMGSSSQYSEDIASRIDMQVRAIIQHCHTETVQIIKDN 586
Query: 172 ---MDKLTLSFLSK 182
+DKL + K
Sbjct: 587 RVVIDKLVDLLIEK 600
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 26 GVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
GV F+DVAG+ EAK E E V +LK+PE + +GAK
Sbjct: 169 GVTFNDVAGVDEAKEEFEEVVSFLKKPERFTAVGAK 204
>sp|A9NE17|FTSH_ACHLI ATP-dependent zinc metalloprotease FtsH OS=Acholeplasma laidlawii
(strain PG-8A) GN=ftsH PE=3 SV=1
Length = 641
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 70/124 (56%), Gaps = 9/124 (7%)
Query: 60 AKYTPSEQKL-YNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQF 118
A YTP E+K Y K EL + ALGGR AE I+F+ +T+GA +D K+ T++A + ++
Sbjct: 476 ALYTPVEEKFNYAKSELLAMITSALGGRVAEEIMFDDVTTGAYDDFKRATKLARSMVTEY 535
Query: 119 GMNENIGLVSFPKDDNRQSI-------RPYSKRLAALMDEEASKLIAQCYMHTEKVLRDN 171
GM+ ++G + + D + + +S +A +D E +I +CY H KV+ +N
Sbjct: 536 GMS-DLGPIQYESDSGNVFLGRDYLKDKNFSDAVALEIDREVRAIITECYEHARKVINEN 594
Query: 172 MDKL 175
+ L
Sbjct: 595 KNLL 598
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 1 MFLGFQNQMSRAK-FTLVDPLVGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLG 59
MF +Q ++A+ FT + GR VKFSD+AG E K E+ E +D+LK P+ Y ++G
Sbjct: 152 MFRSMSSQSNKAQDFTKNRAKLSQGRKVKFSDIAGADEEKAEMAELIDFLKNPKKYADMG 211
Query: 60 AK 61
A+
Sbjct: 212 AR 213
>sp|Q6MJV1|FTSH2_BDEBA ATP-dependent zinc metalloprotease FtsH 2 OS=Bdellovibrio
bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529
/ HD100) GN=ftsH2 PE=3 SV=1
Length = 615
Score = 76.6 bits (187), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 76/135 (56%), Gaps = 17/135 (12%)
Query: 56 QNLGA-KYT---PSEQK-LYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEM 110
+ LGA YT P+E + L + EL D++C+ LGGR AE ++F +++GA +DL +VT +
Sbjct: 443 RGLGALGYTMQRPTEDRYLMTRPELLDKICVLLGGRVAEELIFGEVSTGASDDLVRVTNI 502
Query: 111 ANMQIRQFGMNENIGLVSF----------PKDDNRQSIRPYSKRLAALMDEEASKLIAQC 160
A + ++GM+E +G + F P R R YS++ A +D+E +++A C
Sbjct: 503 AEALVTRYGMSEVLGNIVFEQPTGNFLEVPGAGYRS--RTYSEKSATEIDQEIRQIVAAC 560
Query: 161 YMHTEKVLRDNMDKL 175
+ T + L N+ L
Sbjct: 561 ALRTRESLAANLSIL 575
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 24 GRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
G V F DVAG+ EAK E+ E V +LK P+ + LGA+
Sbjct: 149 GVKVSFGDVAGVEEAKAELYEVVQFLKSPQEFGRLGAR 186
>sp|A9BHD3|FTSH2_PETMO ATP-dependent zinc metalloprotease FtsH 2 OS=Petrotoga mobilis
(strain DSM 10674 / SJ95) GN=ftsH2 PE=3 SV=1
Length = 630
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 68/122 (55%), Gaps = 8/122 (6%)
Query: 64 PSEQK-LYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNE 122
PSE + L + E+ D++ LGGRAAE IVFN IT+GA NDLK+ TE+ + Q GM+E
Sbjct: 462 PSEDRFLITEPEIKDKIVGMLGGRAAEEIVFNEITTGAGNDLKRATELVREMVAQLGMSE 521
Query: 123 NIGLVSFPKDDNR-------QSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL 175
IG +++ +++ ++ +S+ A +D E I Y + +L +N +L
Sbjct: 522 KIGPIAWGEEEGEIFLGREITRMKNFSQETAKEIDSEIKNFILSSYEKAKNLLSENRKRL 581
Query: 176 TL 177
L
Sbjct: 582 DL 583
Score = 37.0 bits (84), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
+ F+DVAG+ E K E+ + V++LK P+ + LGAK
Sbjct: 160 ITFNDVAGIDEVKEELEDIVNFLKDPKNFSALGAK 194
>sp|D3F124|FTSH1_CONWI ATP-dependent zinc metalloprotease FtsH 1 OS=Conexibacter woesei
(strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577)
GN=ftsH1 PE=3 SV=1
Length = 653
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 56 QNLGAKYT-PSEQK-LYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANM 113
Q LG + P E K L + L D M M LGGRAAE I+F IT+GA NDL+KVT A
Sbjct: 447 QALGYTISMPQEDKFLTTRAALGDTMAMTLGGRAAEEIIFGEITTGASNDLEKVTGTAKQ 506
Query: 114 QIRQFGMNENIGLVSFPKDDNR-------QSIRPYSKRLAALMDEEASKLIAQCYMHTEK 166
+ +FGM+E +G F D ++ S YS +A +D+E +++ + +
Sbjct: 507 MVMRFGMSEKLGPRVFGHDQSQPFLGREFSSQADYSDEIAREIDDEIRRIVETAHQSAKD 566
Query: 167 VLRDNMDKLT 176
+L ++ + L
Sbjct: 567 ILTEHRESLV 576
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
+ F DVAG EA E+ E ++L+ P+ +Q LGA+
Sbjct: 155 ITFRDVAGADEAVEELHEIKEFLENPKKFQALGAR 189
>sp|D2NQQ7|FTSH_ROTMD ATP-dependent zinc metalloprotease FtsH OS=Rothia mucilaginosa
(strain DY-18) GN=ftsH PE=3 SV=1
Length = 756
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 10/122 (8%)
Query: 71 NKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNENIGLVSFP 130
+ EL D+M A+GGRAAE IVF+ ++GA ND++K T+ A + +GM+ IG V
Sbjct: 507 TRHELLDQMAYAMGGRAAEEIVFHDPSTGASNDIQKATDTARKMVTDYGMSAVIGSVKLG 566
Query: 131 KDDNRQ-------SIRPYSKRLAALMDEEASKLIAQCYMHTEKVL---RDNMDKLTLSFL 180
+D S R YS AA +D E L+ Q + ++L RD +D+L + L
Sbjct: 567 GEDTEPFLGGGGASARNYSDATAAKVDAEIRALLEQAHDEAFQILLENRDILDRLAFALL 626
Query: 181 SK 182
K
Sbjct: 627 EK 628
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
V+FSDVAG+ EA E+ E ++L PE + LGAK
Sbjct: 198 VRFSDVAGVDEALAELEEVREFLAEPEKFTRLGAK 232
>sp|B9MPK5|FTSH_CALBD ATP-dependent zinc metalloprotease FtsH OS=Caldicellulosiruptor
bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320)
GN=ftsH PE=3 SV=1
Length = 616
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 8/132 (6%)
Query: 52 PEYYQNLGAKYTPSEQKLY-NKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEM 110
P Y Y P E K Y +K ++ + LGGR AE +V +++GA +D+K+ T++
Sbjct: 454 PRGYAGGYTMYLPKEDKFYASKSDMMREIVTLLGGRVAEKLVLEDVSTGAASDIKRATKI 513
Query: 111 ANMQIRQFGMNENIGLVSFPKDDNRQSI-------RPYSKRLAALMDEEASKLIAQCYMH 163
A + ++GM++ +G ++F + + R YS+ +AA +D E +I + Y
Sbjct: 514 ARDMVTKYGMSDKLGPMTFGTEQEEVFLGRDLALARNYSEEVAAEIDREIKSIIEEAYKK 573
Query: 164 TEKVLRDNMDKL 175
E++L+ N+DKL
Sbjct: 574 AEEILKQNIDKL 585
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
V F+DVAG E K E+ E +D+LK P Y LGA+
Sbjct: 165 VTFADVAGADEEKEELKEVIDFLKNPRKYIELGAR 199
>sp|A0LN68|FTSH_SYNFM ATP-dependent zinc metalloprotease FtsH OS=Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB) GN=ftsH PE=3 SV=1
Length = 647
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 77/141 (54%), Gaps = 17/141 (12%)
Query: 54 YYQNLGAKYTPSEQK-LYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMAN 112
Y Q L P+E + L + EL DR+ + LGGR +E I+F +++GAQNDL++ T++A
Sbjct: 481 YTQQL-----PTEDRYLMTRNELLDRLQVLLGGRVSEEIIFGDVSTGAQNDLQRATDIAR 535
Query: 113 MQIRQFGMNENIGLVSFPKDDNRQSI--------RPYSKRLAALMDEEASKLIAQCYMHT 164
+ ++GM+E +G +++ +D + R YS+ +A +DEE ++++ +
Sbjct: 536 SMVMEYGMSERLGPLTYTRDPRSAHLDLGLGSRERDYSEMIAQEIDEEITRIVEDAHEKV 595
Query: 165 EKVL---RDNMDKLTLSFLSK 182
L R ++KL L K
Sbjct: 596 RATLKRERGCLEKLAKILLEK 616
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
+ F DVAG+ EAK E+ E V +LK P +Q LG +
Sbjct: 184 ITFDDVAGIDEAKGELEEIVQFLKDPGKFQRLGGR 218
>sp|A0PXM8|FTSH_CLONN ATP-dependent zinc metalloprotease FtsH OS=Clostridium novyi
(strain NT) GN=ftsH PE=3 SV=1
Length = 676
Score = 74.7 bits (182), Expect = 3e-13, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 66/112 (58%), Gaps = 7/112 (6%)
Query: 71 NKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNENIGLVSFP 130
+K +L D M LGGR AE I+ I++GA ND+++V+ +A + ++GM+E +G ++F
Sbjct: 474 SKSKLKDEMVGLLGGRVAEQIIIGDISTGASNDIQRVSNIARKMVMEYGMSEKLGTITFG 533
Query: 131 KDDNRQSI-------RPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL 175
D + I + YS+ +A +D E L+ + Y EK+L +++DKL
Sbjct: 534 SDHDEVFIGREIGKSKNYSEEVAFEIDNEVKALVDEAYKKAEKILTEHIDKL 585
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 10 SRAKFTLVDPLVGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
SRAK D + V F DVAG E K E+ E VD+LK P+ Y ++GA+
Sbjct: 153 SRAKLATPD-----SQKVTFKDVAGADEEKGELEEIVDFLKEPKKYLDMGAR 199
>sp|Q67T82|FTSH2_SYMTH ATP-dependent zinc metalloprotease FtsH 2 OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ftsH2 PE=3 SV=1
Length = 587
Score = 74.7 bits (182), Expect = 3e-13, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 63 TPSE-QKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMN 121
TP E Q LY + EL R+ M LGG AAE ++ ++GAQ+DL++ T++A I ++GM
Sbjct: 451 TPEEDQMLYTRSELEARLKMLLGGLAAEEVLLGERSTGAQDDLRRATQVAREMISRYGMG 510
Query: 122 ENIGLVSFPKDDNRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL 175
+++GL++ P D + ++ S+ AA ++ E L+ + Y ++ N D+L
Sbjct: 511 QSVGLMAVP-DTDWPGVQNLSQESAAAIEREVQALLDRLYREVRSLIETNRDRL 563
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 15 TLVDPLVGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
+ V PL G V F+DVAG+ E K E+ E VDYLK P+ Y+ +GA+
Sbjct: 137 STVKPLAPGESPVTFADVAGMDEVKGELEEIVDYLKNPDKYRAIGAR 183
>sp|B1GZK7|FTSH_UNCTG ATP-dependent zinc metalloprotease FtsH OS=Uncultured termite group
1 bacterium phylotype Rs-D17 GN=ftsH PE=3 SV=1
Length = 631
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 68/121 (56%), Gaps = 10/121 (8%)
Query: 64 PSEQK-LYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNE 122
P E K L +K EL D++ + GGR AE +VF+ IT+GAQND+ K T +A + +FGM++
Sbjct: 454 PEEDKYLTSKSELLDKLSILFGGRVAEELVFSEITTGAQNDISKATGIAMRMVTEFGMSD 513
Query: 123 NIGLVS--------FPKDDNRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDK 174
IG ++ F D + R +S + + L+DEE +I K+++DN+
Sbjct: 514 KIGPMALQRPNEEVFLGRDISRDAR-HSGKTSELIDEEVKNIIYSSKSRASKIIKDNVSI 572
Query: 175 L 175
L
Sbjct: 573 L 573
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 1 MFLGFQNQMSRAKFTLVDPLVGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGA 60
M +G + MS K T VG + + F DVAG EAK E+ E +++LK P +Q LG
Sbjct: 128 MSMGNKQAMSFGK-TKAKLAVGASKKITFKDVAGCDEAKEELQELIEFLKDPARFQKLGG 186
Query: 61 K 61
K
Sbjct: 187 K 187
>sp|Q1XDF9|FTSH_PORYE ATP-dependent zinc metalloprotease FtsH OS=Porphyra yezoensis
GN=ftsH PE=3 SV=1
Length = 628
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 74/128 (57%), Gaps = 14/128 (10%)
Query: 62 YTPSE-QKLYNKEELFDRMCMALGGRAAEAIVFN--RITSGAQNDLKKVTEMANMQIRQF 118
+TPS+ Q L ++ ++ R+ ALGGRAAE I+F +T+GA NDL++VT MA + +F
Sbjct: 468 FTPSDDQSLISRSQILARIVGALGGRAAEEIIFGDAEVTTGASNDLQQVTSMARQMVTRF 527
Query: 119 GMNENIGLVSFPKDDNRQSI-------RPYSKRLAALMDEEASKLIAQCYMHTEKVLRDN 171
GM++ IG +S + YS +A +D++ +++++CY + ++ DN
Sbjct: 528 GMSK-IGPLSLESQGGDPFLGRGMGGGSEYSDEVATNIDKQVREIVSECYAQAKHIIIDN 586
Query: 172 ---MDKLT 176
+D+L
Sbjct: 587 RVVIDRLV 594
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 26 GVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
GV F+DVAG+ EAK E E V +LK+PE + +GAK
Sbjct: 169 GVVFNDVAGVEEAKEEFQEVVTFLKQPESFTAVGAK 204
>sp|Q3JEE4|FTSH_NITOC ATP-dependent zinc metalloprotease FtsH OS=Nitrosococcus oceani
(strain ATCC 19707 / NCIMB 11848) GN=ftsH PE=3 SV=1
Length = 639
Score = 73.6 bits (179), Expect = 6e-13, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 70/117 (59%), Gaps = 7/117 (5%)
Query: 66 EQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNENIG 125
E+ ++ L DR+ + LGGR +E I F +TSGA++DLK+ T++A + Q+GM++ IG
Sbjct: 481 ERHSLSRAYLLDRLGVMLGGRISEKITFGDVTSGAESDLKQATQLARRMVCQWGMSDKIG 540
Query: 126 LVSFPKDDNR-------QSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL 175
+F + + R +S++ A ++D+E +++++ TE +L++N KL
Sbjct: 541 AAAFSRSEEHVFLGRELSQPRDFSEQTAQIIDDEIRRILSEVERKTENLLQENRAKL 597
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 23 GGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
G GV F DVAG+ AK ++ E VDYLK P ++ +GAK
Sbjct: 174 GSIGVTFEDVAGVENAKRDLREIVDYLKEPGQFKAVGAK 212
>sp|B4U7U4|FTSH_HYDS0 ATP-dependent zinc metalloprotease FtsH OS=Hydrogenobaculum sp.
(strain Y04AAS1) GN=ftsH PE=3 SV=1
Length = 636
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 73/122 (59%), Gaps = 16/122 (13%)
Query: 66 EQKLYNKEELFDRMCMALGGRAAEAIVFNR--ITSGAQNDLKKVTEMANMQIRQFGMNEN 123
++ +Y+K +L R+ + +GGR AE + + + IT+GA+NDL++ T++A + +GM+EN
Sbjct: 464 DKHIYDKADLLSRIHILMGGRCAEEVFYGKDGITTGAENDLQRATDLAYRIVATWGMSEN 523
Query: 124 IGLVSFPKDDNRQSIRPY---------SKRLAALMDEEASKLIAQCYMHTEKVLRDNMDK 174
+G +S R++I P+ S L +D+E KL+A Y T++V+ +N +
Sbjct: 524 VGPISV-----RRNINPFLGGSTVTEGSPDLLKEIDKEVQKLLASAYEETKRVIAENKEA 578
Query: 175 LT 176
L+
Sbjct: 579 LS 580
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKYTPSEQKLYNKEELFDRMCM--ALG 84
VK +VAG+ E K EV E ++YLK P ++ LG + P + L+ E + + AL
Sbjct: 160 VKLDNVAGMDEVKEEVAEVIEYLKDPARFRKLGGR--PPKGILFYGEPGVGKTLLAKALA 217
Query: 85 GRA 87
G A
Sbjct: 218 GEA 220
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,871,480
Number of Sequences: 539616
Number of extensions: 2450191
Number of successful extensions: 6990
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 6400
Number of HSP's gapped (non-prelim): 435
length of query: 182
length of database: 191,569,459
effective HSP length: 110
effective length of query: 72
effective length of database: 132,211,699
effective search space: 9519242328
effective search space used: 9519242328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)