Query psy13368
Match_columns 182
No_of_seqs 183 out of 1587
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 17:42:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13368.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13368hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2di4_A Zinc protease, cell div 100.0 2.1E-37 7.1E-42 256.2 14.0 146 35-180 17-182 (238)
2 2ce7_A Cell division protein F 100.0 1.3E-32 4.4E-37 247.1 14.7 146 35-180 273-439 (476)
3 2dhr_A FTSH; AAA+ protein, hex 100.0 2.8E-31 9.6E-36 239.6 14.5 144 36-180 289-449 (499)
4 4b4t_J 26S protease regulatory 98.3 3.6E-07 1.2E-11 80.4 3.0 58 21-79 139-201 (405)
5 4b4t_H 26S protease regulatory 98.1 9.3E-07 3.2E-11 79.0 3.2 57 22-79 201-262 (467)
6 4b4t_I 26S protease regulatory 98.1 1.3E-06 4.3E-11 77.5 3.8 57 22-79 174-235 (437)
7 4b4t_L 26S protease subunit RP 98.1 1.4E-06 4.9E-11 77.2 2.7 56 23-79 174-234 (437)
8 4b4t_K 26S protease regulatory 98.0 4E-06 1.4E-10 74.2 3.6 57 22-79 164-225 (428)
9 4b4t_M 26S protease regulatory 97.9 3.6E-06 1.2E-10 74.6 3.1 58 22-80 173-235 (434)
10 2dhr_A FTSH; AAA+ protein, hex 97.5 9.1E-05 3.1E-09 66.6 5.1 69 5-80 12-84 (499)
11 3cf2_A TER ATPase, transitiona 97.3 9.7E-05 3.3E-09 70.0 3.0 56 23-79 197-257 (806)
12 2ce7_A Cell division protein F 96.9 0.00078 2.7E-08 60.2 5.1 54 24-78 10-67 (476)
13 2x8a_A Nuclear valosin-contain 96.4 0.0013 4.3E-08 54.2 2.3 47 23-70 3-50 (274)
14 3cf2_A TER ATPase, transitiona 96.2 0.0018 6.1E-08 61.4 2.3 56 22-78 469-529 (806)
15 1xwi_A SKD1 protein; VPS4B, AA 95.8 0.0053 1.8E-07 51.4 3.5 36 21-56 3-39 (322)
16 3cf0_A Transitional endoplasmi 95.5 0.0075 2.6E-07 49.8 3.0 48 22-70 7-55 (301)
17 2qz4_A Paraplegin; AAA+, SPG7, 95.3 0.012 4.2E-07 46.5 3.7 45 25-70 1-45 (262)
18 1lv7_A FTSH; alpha/beta domain 94.9 0.021 7.2E-07 45.5 4.0 47 23-70 5-51 (257)
19 1ixz_A ATP-dependent metallopr 94.4 0.041 1.4E-06 43.7 4.5 50 20-70 6-55 (254)
20 2r62_A Cell division protease 94.0 0.033 1.1E-06 44.4 3.3 56 22-78 3-62 (268)
21 1iy2_A ATP-dependent metallopr 93.2 0.1 3.4E-06 42.2 4.8 49 21-70 31-79 (278)
22 3eie_A Vacuolar protein sortin 92.9 0.068 2.3E-06 44.3 3.4 38 20-57 8-46 (322)
23 2qp9_X Vacuolar protein sortin 91.8 0.11 3.8E-06 43.9 3.5 38 20-57 41-79 (355)
24 2zan_A Vacuolar protein sortin 91.0 0.16 5.6E-06 44.2 3.8 37 20-56 124-161 (444)
25 3h4m_A Proteasome-activating n 90.4 0.13 4.6E-06 41.1 2.6 39 23-61 10-49 (285)
26 1ypw_A Transitional endoplasmi 87.8 0.27 9.1E-06 46.3 2.9 55 24-79 198-257 (806)
27 3hu3_A Transitional endoplasmi 85.4 0.39 1.3E-05 42.6 2.5 54 25-79 199-257 (489)
28 3d8b_A Fidgetin-like protein 1 84.1 0.85 2.9E-05 38.3 3.9 37 20-56 74-111 (357)
29 3b9p_A CG5977-PA, isoform A; A 83.9 1.1 3.7E-05 36.0 4.3 37 20-56 11-48 (297)
30 1ypw_A Transitional endoplasmi 77.6 0.99 3.4E-05 42.4 2.3 57 21-78 468-529 (806)
31 3vfd_A Spastin; ATPase, microt 74.3 3.1 0.0001 35.1 4.3 38 20-57 105-143 (389)
32 3cmw_A Protein RECA, recombina 68.6 3.3 0.00011 42.3 3.7 65 23-87 1013-1109(1706)
33 2kk7_A V-type ATP synthase sub 52.3 37 0.0013 20.6 5.6 37 143-179 13-49 (52)
34 2kk7_A V-type ATP synthase sub 24.8 1.2E+02 0.0041 18.2 4.7 31 149-179 8-38 (52)
No 1
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=100.00 E-value=2.1e-37 Score=256.15 Aligned_cols=146 Identities=25% Similarity=0.452 Sum_probs=117.4
Q ss_pred hHHHHHHHHHH-HHH-hcCchh---------hccCCc-eEccc-ccccCCHHHHHHHHHHHhHHHHHHHHHh--CccccC
Q psy13368 35 LREAKVEVMEF-VDY-LKRPEY---------YQNLGA-KYTPS-EQKLYNKEELFDRMCMALGGRAAEAIVF--NRITSG 99 (182)
Q Consensus 35 ~~~a~~El~~~-V~~-l~~P~~---------~~alG~-~~~Pk-d~ll~t~~~l~~~i~v~laGraAEei~f--G~vstG 99 (182)
.-.||||+||+ |.| |.+++. .+++|+ .+.|+ +.+++||++|+++|+|+|||||||+++| |++|||
T Consensus 17 ~~vAyHEAGHAlva~~l~~~~pV~KVTIiPRG~alG~t~~~P~ed~~~~tk~~l~~~i~v~LgGRaAEelifG~g~vttG 96 (238)
T 2di4_A 17 EKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDKHIYDKKDLYNKILVLLGGRAAEEVFFGKDGITTG 96 (238)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCCCCEECC----------------CCCCBHHHHHHHHHHHHHHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHHHHHcCCCCceeEEEEeecCCcceEEEeCCcccccccCHHHHHHHHHHHHhHHHHHHHHhCCCCcccC
Confidence 34599999995 556 443332 357886 45685 7899999999999999999999999999 789999
Q ss_pred ccchHHHHHHHHHHHHHhcCCCCccceeecCCCCCC-----CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHH
Q psy13368 100 AQNDLKKVTEMANMQIRQFGMNENIGLVSFPKDDNR-----QSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDK 174 (182)
Q Consensus 100 a~~Dl~~At~lA~~mV~~~Gms~~~G~~~~~~~~~~-----~~~~~~s~~~~~~id~ev~~ll~~a~~~a~~iL~~~r~~ 174 (182)
|+|||++||+||+.||+.||||+++|+++|....+. ...+++|++|...||+||++||+++|++|++||++|++.
T Consensus 97 A~~Dl~~AT~iAr~MV~~~GMs~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~iD~Ev~~il~~ay~~a~~iL~~nr~~ 176 (238)
T 2di4_A 97 AENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEP 176 (238)
T ss_dssp GHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC----------CCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred hHhHHHHHHHHHHHHHHHhCCCCCCCceeecCCccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999754321 235789999999999999999999999999999999999
Q ss_pred Hhhhhc
Q psy13368 175 LTLSFL 180 (182)
Q Consensus 175 le~l~~ 180 (182)
|++|+.
T Consensus 177 L~~lA~ 182 (238)
T 2di4_A 177 LKAVVK 182 (238)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999863
No 2
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=1.3e-32 Score=247.14 Aligned_cols=146 Identities=33% Similarity=0.547 Sum_probs=117.6
Q ss_pred hHHHHHHHHHH-HHH-hcCchh----------hccCCc-eEccc-ccccCCHHHHHHHHHHHhHHHHHHHHHhCccccCc
Q psy13368 35 LREAKVEVMEF-VDY-LKRPEY----------YQNLGA-KYTPS-EQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGA 100 (182)
Q Consensus 35 ~~~a~~El~~~-V~~-l~~P~~----------~~alG~-~~~Pk-d~ll~t~~~l~~~i~v~laGraAEei~fG~vstGa 100 (182)
...|+||+||+ |.| +++++. .+++|+ ++.|+ +.+++||++|+++|+|+|||||||+++||++||||
T Consensus 273 ~~~a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~alg~~~~~p~~~~~~~~~~~l~~~i~~~l~Gr~ae~~~~g~~~~ga 352 (476)
T 2ce7_A 273 RIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGA 352 (476)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCCCCEEECC-----------------CCSCBHHHHHHHHHHHTHHHHHHHHHHSSCCGGG
T ss_pred hhhHHHHhhhHHHhhccCCccccceeeeecCcccccceEEEcCcccccccCHHHHHHHHHHHHhHHHHHhhhcCCCCccc
Confidence 44599999995 455 554443 267886 45685 78999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhcCCCCccceeecCCCCCC-------CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHH
Q psy13368 101 QNDLKKVTEMANMQIRQFGMNENIGLVSFPKDDNR-------QSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMD 173 (182)
Q Consensus 101 ~~Dl~~At~lA~~mV~~~Gms~~~G~~~~~~~~~~-------~~~~~~s~~~~~~id~ev~~ll~~a~~~a~~iL~~~r~ 173 (182)
+|||++||+||+.||++||||+++|+++|...... ...+++|+++...||+||+++|+++|++|++||++|++
T Consensus 353 ~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 432 (476)
T 2ce7_A 353 ANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIRKYRK 432 (476)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcCCceeecCCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999998765321 23578999999999999999999999999999999999
Q ss_pred HHhhhhc
Q psy13368 174 KLTLSFL 180 (182)
Q Consensus 174 ~le~l~~ 180 (182)
.|++++.
T Consensus 433 ~l~~~a~ 439 (476)
T 2ce7_A 433 QLDNIVE 439 (476)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999863
No 3
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.97 E-value=2.8e-31 Score=239.63 Aligned_cols=144 Identities=29% Similarity=0.477 Sum_probs=126.2
Q ss_pred HHHHHHHHHH-HHH-hcCchhh---------ccCCceEccc--ccccCCHHHHHHHHHHHhHHHHHHHHHhCccccCccc
Q psy13368 36 REAKVEVMEF-VDY-LKRPEYY---------QNLGAKYTPS--EQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQN 102 (182)
Q Consensus 36 ~~a~~El~~~-V~~-l~~P~~~---------~alG~~~~Pk--d~ll~t~~~l~~~i~v~laGraAEei~fG~vstGa~~ 102 (182)
..|+||++|+ +.| |.+++.+ +++|+.+ |+ +.+++||.+|+++|+++||||+||+++||++||||+|
T Consensus 289 ~~a~~e~g~av~~~~l~~~~~v~~~~i~pr~~~~g~~~-p~q~~~~~~t~~~l~~~i~~~lgGr~ae~~~~g~~~~ga~~ 367 (499)
T 2dhr_A 289 ITAYHEAGHALAAHFLEHADGVHKVTIVPRGRALGFMM-PRREDMLHWSRKRLLDQIAVALAGRAAEEIVFDDVTTGAEN 367 (499)
T ss_dssp HHHHHHHHHHHHHCCSSSCCCCCCEESCCSSCTTCSSH-HHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHSCSCCBCCCH
T ss_pred hhHHHHHHHHHHHhhcCCCCeeeEEEeecCCCcCcccc-cchhhhhccCHHHHHHHHHHHhhhHhHHHhhhcccCcccHH
Confidence 4599999996 455 4554432 5788876 75 8889999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCccceeecCCCCCC----CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHhhh
Q psy13368 103 DLKKVTEMANMQIRQFGMNENIGLVSFPKDDNR----QSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKLTLS 178 (182)
Q Consensus 103 Dl~~At~lA~~mV~~~Gms~~~G~~~~~~~~~~----~~~~~~s~~~~~~id~ev~~ll~~a~~~a~~iL~~~r~~le~l 178 (182)
||++||+||+.||++||||+++|+++|....+. ...+++|+++...||+||++||+++|++|++||++|++.|+++
T Consensus 368 Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l~~~ 447 (499)
T 2dhr_A 368 DFRQATELARRMITEWGMHPEFGPVAYAVREDTYLGGYDVRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERV 447 (499)
T ss_dssp HHHHHHHHHHHHHTTSCCCSSSCSCCCCCCCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCceeecCCCccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998765421 0146899999999999999999999999999999999999998
Q ss_pred hc
Q psy13368 179 FL 180 (182)
Q Consensus 179 ~~ 180 (182)
+.
T Consensus 448 a~ 449 (499)
T 2dhr_A 448 AE 449 (499)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 4
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=3.6e-07 Score=80.42 Aligned_cols=58 Identities=28% Similarity=0.477 Sum_probs=51.3
Q ss_pred cCCCCCcccccCcChHHHHHHHHHHHHH-hcCchhhccCCceEcccccccC----CHHHHHHHH
Q psy13368 21 VGGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKYTPSEQKLY----NKEELFDRM 79 (182)
Q Consensus 21 ~~~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~alG~~~~Pkd~ll~----t~~~l~~~i 79 (182)
+.+.|+|+|+||+|+++++.|+.++|.| |++|+.|..+|..+ |++.+|| |.++++++-
T Consensus 139 ~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~-prGvLL~GPPGTGKTllAkA 201 (405)
T 4b4t_J 139 VEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQ-PKGVILYGPPGTGKTLLARA 201 (405)
T ss_dssp EECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCC-CCCEEEESCSSSSHHHHHHH
T ss_pred ccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-CCceEEeCCCCCCHHHHHHH
Confidence 3467999999999999999999999999 99999999999885 8898888 777777754
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.14 E-value=9.3e-07 Score=79.03 Aligned_cols=57 Identities=30% Similarity=0.464 Sum_probs=51.0
Q ss_pred CCCCCcccccCcChHHHHHHHHHHHHH-hcCchhhccCCceEcccccccC----CHHHHHHHH
Q psy13368 22 GGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKYTPSEQKLY----NKEELFDRM 79 (182)
Q Consensus 22 ~~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~alG~~~~Pkd~ll~----t~~~l~~~i 79 (182)
.+.|+|+|+||+|++++|.++.++|.+ |++|+.|..+|..+ |++.+|| |.++++++-
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~p-prGILLyGPPGTGKTlLAkA 262 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDP-PKGILLYGPPGTGKTLCARA 262 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCC-CSEEEECSCTTSSHHHHHHH
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCC-CCceEeeCCCCCcHHHHHHH
Confidence 368999999999999999999999988 99999999999884 8899888 777777764
No 6
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=1.3e-06 Score=77.55 Aligned_cols=57 Identities=30% Similarity=0.522 Sum_probs=50.8
Q ss_pred CCCCCcccccCcChHHHHHHHHHHHHH-hcCchhhccCCceEcccccccC----CHHHHHHHH
Q psy13368 22 GGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKYTPSEQKLY----NKEELFDRM 79 (182)
Q Consensus 22 ~~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~alG~~~~Pkd~ll~----t~~~l~~~i 79 (182)
.+.|+|+|+||+|++++|.++.++|.+ |++|+.|..+|..+ |++.+|| |.++++++-
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~-prGvLLyGPPGTGKTlLAkA 235 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKP-PKGVILYGAPGTGKTLLAKA 235 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCC-CSEEEEESSTTTTHHHHHHH
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-CCCCceECCCCchHHHHHHH
Confidence 468999999999999999999999988 99999999999885 8898888 777777753
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.05 E-value=1.4e-06 Score=77.25 Aligned_cols=56 Identities=30% Similarity=0.541 Sum_probs=50.1
Q ss_pred CCCCcccccCcChHHHHHHHHHHHHH-hcCchhhccCCceEcccccccC----CHHHHHHHH
Q psy13368 23 GGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKYTPSEQKLY----NKEELFDRM 79 (182)
Q Consensus 23 ~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~alG~~~~Pkd~ll~----t~~~l~~~i 79 (182)
+.|+|+|+||+|+++++.++.++|.| |++|+.|..+|..+ |++.+|| |.++++++-
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~-prGvLL~GPPGtGKTllAkA 234 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKP-PKGVLLYGPPGTGKTLLAKA 234 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCC-CCEEEEESCTTSSHHHHHHH
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCC-CCeEEEECCCCCcHHHHHHH
Confidence 58999999999999999999999998 99999999999874 8898888 777777753
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.95 E-value=4e-06 Score=74.16 Aligned_cols=57 Identities=26% Similarity=0.471 Sum_probs=50.4
Q ss_pred CCCCCcccccCcChHHHHHHHHHHHHH-hcCchhhccCCceEcccccccC----CHHHHHHHH
Q psy13368 22 GGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKYTPSEQKLY----NKEELFDRM 79 (182)
Q Consensus 22 ~~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~alG~~~~Pkd~ll~----t~~~l~~~i 79 (182)
.+.|+|+|+||+|++++|.++.+.|.+ +++|+.|..+|..+ |++.+|| |.++++++-
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~-prGiLL~GPPGtGKT~lakA 225 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDP-PRGVLLYGPPGTGKTMLVKA 225 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCC-CCEEEEESCTTTTHHHHHHH
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-CceEEEECCCCCCHHHHHHH
Confidence 468999999999999999999999887 99999999999875 8898888 777777764
No 9
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.94 E-value=3.6e-06 Score=74.64 Aligned_cols=58 Identities=26% Similarity=0.532 Sum_probs=50.4
Q ss_pred CCCCCcccccCcChHHHHHHHHHHHHH-hcCchhhccCCceEcccccccC----CHHHHHHHHH
Q psy13368 22 GGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKYTPSEQKLY----NKEELFDRMC 80 (182)
Q Consensus 22 ~~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~alG~~~~Pkd~ll~----t~~~l~~~i~ 80 (182)
.+.|+++|+||+|++++|.++.+.|.+ |++|+.|..+|..+ |++.+|| |.++++++-.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~-prGvLLyGPPGTGKTllAkAi 235 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRA-PKGALMYGPPGTGKTLLARAC 235 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCC-CCEEEEESCTTSSHHHHHHHH
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-CCeeEEECcCCCCHHHHHHHH
Confidence 368999999999999999999998766 99999999999885 8898888 7777777643
No 10
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.49 E-value=9.1e-05 Score=66.62 Aligned_cols=69 Identities=35% Similarity=0.514 Sum_probs=52.0
Q ss_pred CCCCCCcccccccccccCCCCCcccccCcChHHHHHHHHHHHHHhcCchhhccCCceEcccccccC----CHHHHHHHHH
Q psy13368 5 FQNQMSRAKFTLVDPLVGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKYTPSEQKLY----NKEELFDRMC 80 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~f~dv~g~~~a~~El~~~V~~l~~P~~~~alG~~~~Pkd~ll~----t~~~l~~~i~ 80 (182)
|..++|++|++. +.++++|+||+|+++++.++.+++.++.+|..+..+|... |++.+|+ |.++++.+..
T Consensus 12 ~~~~~~~~~~~~------~~~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~i-p~GvLL~GppGtGKTtLaraI 84 (499)
T 2dhr_A 12 FSFTKSRARVLT------EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARI-PKGVLLVGPPGVGKTHLARAV 84 (499)
T ss_dssp ------CCEEEC------SCCCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCC-CSEEEEECSSSSSHHHHHHHH
T ss_pred CCcccCcceeec------cCCCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCC-CceEEEECCCCCCHHHHHHHH
Confidence 567889998764 3489999999999999999999999999999999999874 7776666 6666655543
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.30 E-value=9.7e-05 Score=70.01 Aligned_cols=56 Identities=27% Similarity=0.534 Sum_probs=49.5
Q ss_pred CCCCcccccCcChHHHHHHHHHHHHH-hcCchhhccCCceEcccccccC----CHHHHHHHH
Q psy13368 23 GGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKYTPSEQKLY----NKEELFDRM 79 (182)
Q Consensus 23 ~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~alG~~~~Pkd~ll~----t~~~l~~~i 79 (182)
..++|+|+||+|+++++.++.++|.+ |++|+.|..+|..+ |++.+|| |.++++.+.
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~-p~GILL~GPPGTGKT~LAra 257 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKP-PRGILLYGPPGTGKTLIARA 257 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCC-CCEEEEECCTTSCHHHHHHH
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCC-CCeEEEECCCCCCHHHHHHH
Confidence 46899999999999999999999999 99999999999984 8898888 777776653
No 12
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.94 E-value=0.00078 Score=60.17 Aligned_cols=54 Identities=35% Similarity=0.604 Sum_probs=45.4
Q ss_pred CCCcccccCcChHHHHHHHHHHHHHhcCchhhccCCceEcccccccC----CHHHHHHH
Q psy13368 24 GRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKYTPSEQKLY----NKEELFDR 78 (182)
Q Consensus 24 ~~~~~f~dv~g~~~a~~El~~~V~~l~~P~~~~alG~~~~Pkd~ll~----t~~~l~~~ 78 (182)
.++++|+||+|+++++.++.+++.++++|..+..+|... |++.+|+ |.++++.+
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~-p~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARM-PKGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCC-CSEEEEECCTTSSHHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCC-CCeEEEECCCCCCHHHHHH
Confidence 689999999999999999999999999999999998874 7776665 55555554
No 13
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.39 E-value=0.0013 Score=54.18 Aligned_cols=47 Identities=19% Similarity=0.343 Sum_probs=31.1
Q ss_pred CCCCcccccCcChHHHHHHHHHHHHH-hcCchhhccCCceEcccccccC
Q psy13368 23 GGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKYTPSEQKLY 70 (182)
Q Consensus 23 ~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~alG~~~~Pkd~ll~ 70 (182)
+.|+++|+||+|+++++.++.+.|.+ +.+|..+..+|..+ |++.+++
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~-~~GvlL~ 50 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVT-PAGVLLA 50 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCC-CSEEEEE
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCC-CCeEEEE
Confidence 46899999999999999999996655 89999998888764 6665555
No 14
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.17 E-value=0.0018 Score=61.38 Aligned_cols=56 Identities=23% Similarity=0.459 Sum_probs=47.7
Q ss_pred CCCCCcccccCcChHHHHHHHHHHHHH-hcCchhhccCCceEcccccccC----CHHHHHHH
Q psy13368 22 GGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKYTPSEQKLY----NKEELFDR 78 (182)
Q Consensus 22 ~~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~alG~~~~Pkd~ll~----t~~~l~~~ 78 (182)
.+.++++|+|++|++++|.++.++|.| +++|..|..+|..+ |++.+|| |.++++++
T Consensus 469 ~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~-~~gvLl~GPPGtGKT~lAk 529 (806)
T 3cf2_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTP-SKGVLFYGPPGCGKTLLAK 529 (806)
T ss_dssp CBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCC-CSCCEEESSTTSSHHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCC-CceEEEecCCCCCchHHHH
Confidence 357899999999999999999999988 89999999999874 7787776 66666665
No 15
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.83 E-value=0.0053 Score=51.45 Aligned_cols=36 Identities=42% Similarity=0.469 Sum_probs=31.3
Q ss_pred cCCCCCcccccCcChHHHHHHHHHHHHH-hcCchhhc
Q psy13368 21 VGGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQ 56 (182)
Q Consensus 21 ~~~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~ 56 (182)
+.+.+.++|+||+|+++++.++.+.|.+ +++|..+.
T Consensus 3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~ 39 (322)
T 1xwi_A 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT 39 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSC
T ss_pred eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHh
Confidence 3468899999999999999999998877 88887765
No 16
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.47 E-value=0.0075 Score=49.79 Aligned_cols=48 Identities=25% Similarity=0.489 Sum_probs=38.3
Q ss_pred CCCCCcccccCcChHHHHHHHHHHHHH-hcCchhhccCCceEcccccccC
Q psy13368 22 GGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKYTPSEQKLY 70 (182)
Q Consensus 22 ~~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~alG~~~~Pkd~ll~ 70 (182)
.+.+.++|+||+|++.++.++.+.+.+ +++|+.+..+|... |...+++
T Consensus 7 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~-~~~vLL~ 55 (301)
T 3cf0_A 7 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTP-SKGVLFY 55 (301)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCC-CSEEEEE
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCC-CceEEEE
Confidence 457899999999999999999999887 88898887776542 4444444
No 17
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.29 E-value=0.012 Score=46.51 Aligned_cols=45 Identities=60% Similarity=0.911 Sum_probs=32.2
Q ss_pred CCcccccCcChHHHHHHHHHHHHHhcCchhhccCCceEcccccccC
Q psy13368 25 RGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKYTPSEQKLY 70 (182)
Q Consensus 25 ~~~~f~dv~g~~~a~~El~~~V~~l~~P~~~~alG~~~~Pkd~ll~ 70 (182)
++++|+|+.|.+.++.++.+++.++.+|..+..+|... |...+++
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~-~~~vll~ 45 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKV-PKGALLL 45 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCC-CCEEEEE
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCC-CceEEEE
Confidence 57899999999999999999999999999888777652 4454444
No 18
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.92 E-value=0.021 Score=45.50 Aligned_cols=47 Identities=43% Similarity=0.656 Sum_probs=35.0
Q ss_pred CCCCcccccCcChHHHHHHHHHHHHHhcCchhhccCCceEcccccccC
Q psy13368 23 GGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKYTPSEQKLY 70 (182)
Q Consensus 23 ~~~~~~f~dv~g~~~a~~El~~~V~~l~~P~~~~alG~~~~Pkd~ll~ 70 (182)
..+.++|+|+.|.+.++.++.+++.++.+|..+..+|... |.+.+++
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~vll~ 51 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKI-PKGVLMV 51 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CC-CCEEEEE
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCC-CCeEEEE
Confidence 4688999999999999999999999999998887777653 5554444
No 19
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.38 E-value=0.041 Score=43.70 Aligned_cols=50 Identities=38% Similarity=0.633 Sum_probs=39.2
Q ss_pred ccCCCCCcccccCcChHHHHHHHHHHHHHhcCchhhccCCceEcccccccC
Q psy13368 20 LVGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKYTPSEQKLY 70 (182)
Q Consensus 20 ~~~~~~~~~f~dv~g~~~a~~El~~~V~~l~~P~~~~alG~~~~Pkd~ll~ 70 (182)
++.+.+.++|+|+.|.+.++.++.+++.++.+|..+..+|... |++.+++
T Consensus 6 ~~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~g~ll~ 55 (254)
T 1ixz_A 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARI-PKGVLLV 55 (254)
T ss_dssp --CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCC-CSEEEEE
T ss_pred cccCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCC-CCeEEEE
Confidence 3567899999999999999999999988888888777777653 5554444
No 20
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.03 E-value=0.033 Score=44.45 Aligned_cols=56 Identities=46% Similarity=0.682 Sum_probs=45.6
Q ss_pred CCCCCcccccCcChHHHHHHHHHHHHHhcCchhhccCCceEcccccccC----CHHHHHHH
Q psy13368 22 GGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKYTPSEQKLY----NKEELFDR 78 (182)
Q Consensus 22 ~~~~~~~f~dv~g~~~a~~El~~~V~~l~~P~~~~alG~~~~Pkd~ll~----t~~~l~~~ 78 (182)
.+.+.++|+|+.|.+.++.++.+++.++.+|+.+..+|... |.+.+++ |.++.+.+
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCC-CSCCCCBCSSCSSHHHHHH
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCC-CceEEEECCCCCcHHHHHH
Confidence 35788999999999999999999999999999998888763 6676666 55555554
No 21
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.16 E-value=0.1 Score=42.16 Aligned_cols=49 Identities=39% Similarity=0.634 Sum_probs=38.8
Q ss_pred cCCCCCcccccCcChHHHHHHHHHHHHHhcCchhhccCCceEcccccccC
Q psy13368 21 VGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKYTPSEQKLY 70 (182)
Q Consensus 21 ~~~~~~~~f~dv~g~~~a~~El~~~V~~l~~P~~~~alG~~~~Pkd~ll~ 70 (182)
+...+.++|+|+.|.++++.++.+++.++.+|..+..++... |.+.+++
T Consensus 31 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~-~~gvll~ 79 (278)
T 1iy2_A 31 LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARI-PKGVLLV 79 (278)
T ss_dssp BCCCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCC-CCEEEEE
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCC-CCeEEEE
Confidence 346799999999999999999999988888887777776653 5554444
No 22
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.88 E-value=0.068 Score=44.30 Aligned_cols=38 Identities=34% Similarity=0.488 Sum_probs=32.0
Q ss_pred ccCCCCCcccccCcChHHHHHHHHHHHHH-hcCchhhcc
Q psy13368 20 LVGGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQN 57 (182)
Q Consensus 20 ~~~~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~a 57 (182)
++.+.+.++|+|+.|++.++.++.+.+.+ +++|..+..
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~ 46 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG 46 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc
Confidence 34568999999999999999999998877 777877654
No 23
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=91.80 E-value=0.11 Score=43.90 Aligned_cols=38 Identities=34% Similarity=0.488 Sum_probs=28.5
Q ss_pred ccCCCCCcccccCcChHHHHHHHHHHHHH-hcCchhhcc
Q psy13368 20 LVGGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQN 57 (182)
Q Consensus 20 ~~~~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~a 57 (182)
++...+.++|+||.|++.++.++.+.+.+ ++.|..+..
T Consensus 41 ~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~ 79 (355)
T 2qp9_X 41 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG 79 (355)
T ss_dssp ------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS
T ss_pred hcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc
Confidence 34457899999999999999999998877 788877664
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=90.96 E-value=0.16 Score=44.22 Aligned_cols=37 Identities=41% Similarity=0.482 Sum_probs=30.7
Q ss_pred ccCCCCCcccccCcChHHHHHHHHHHHHH-hcCchhhc
Q psy13368 20 LVGGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQ 56 (182)
Q Consensus 20 ~~~~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~ 56 (182)
++...+.++|+||.|++.++.++.++|.+ +++|..|.
T Consensus 124 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~ 161 (444)
T 2zan_A 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT 161 (444)
T ss_dssp CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTS
T ss_pred eeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhh
Confidence 34567899999999999999999998866 77777654
No 25
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=90.44 E-value=0.13 Score=41.13 Aligned_cols=39 Identities=31% Similarity=0.656 Sum_probs=32.7
Q ss_pred CCCCcccccCcChHHHHHHHHHHHHH-hcCchhhccCCce
Q psy13368 23 GGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAK 61 (182)
Q Consensus 23 ~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~alG~~ 61 (182)
..+.++|+|+.|.+.++.++.+.+.+ +.+|..+..+|..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 49 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIE 49 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCC
Confidence 57899999999999999999998766 7788777666643
No 26
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=87.81 E-value=0.27 Score=46.33 Aligned_cols=55 Identities=29% Similarity=0.543 Sum_probs=43.3
Q ss_pred CCCcccccCcChHHHHHHHHHHHHH-hcCchhhccCCceEcccccccC----CHHHHHHHH
Q psy13368 24 GRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKYTPSEQKLY----NKEELFDRM 79 (182)
Q Consensus 24 ~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~alG~~~~Pkd~ll~----t~~~l~~~i 79 (182)
.+.++|+|+.|++.++.++.+.+.+ +.+|..+..+|... |+..+|+ |.++.+.+.
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~-~~~vLL~Gp~GtGKTtLara 257 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKP-PRGILLYGPPGTGKTLIARA 257 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCC-CCEEEECSCTTSSHHHHHHH
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCC-CCeEEEECcCCCCHHHHHHH
Confidence 5679999999999999999999887 99999999988763 5555555 444444443
No 27
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=85.42 E-value=0.39 Score=42.63 Aligned_cols=54 Identities=28% Similarity=0.578 Sum_probs=42.1
Q ss_pred CCcccccCcChHHHHHHHHHHHHH-hcCchhhccCCceEcccccccC----CHHHHHHHH
Q psy13368 25 RGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKYTPSEQKLY----NKEELFDRM 79 (182)
Q Consensus 25 ~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~alG~~~~Pkd~ll~----t~~~l~~~i 79 (182)
+.++|+|+.|++.++.++.+.+.+ +++|..+..+|... |...+++ |.++++.+.
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~-~~~vLL~GppGtGKT~lAra 257 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKP-PRGILLYGPPGTGKTLIARA 257 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCC-CCEEEEECSTTSSHHHHHHH
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCC-CCcEEEECcCCCCHHHHHHH
Confidence 568999999999999999998877 88899988888763 5566655 555555543
No 28
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=84.11 E-value=0.85 Score=38.28 Aligned_cols=37 Identities=30% Similarity=0.603 Sum_probs=30.2
Q ss_pred ccCCCCCcccccCcChHHHHHHHHHHHHH-hcCchhhc
Q psy13368 20 LVGGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQ 56 (182)
Q Consensus 20 ~~~~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~ 56 (182)
++...+.++|+|+.|.+.++.++.+.+.+ +.+|..+.
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~ 111 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFT 111 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSC
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHh
Confidence 34456889999999999999999998877 66676554
No 29
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=83.91 E-value=1.1 Score=35.99 Aligned_cols=37 Identities=38% Similarity=0.600 Sum_probs=29.6
Q ss_pred ccCCCCCcccccCcChHHHHHHHHHHHHH-hcCchhhc
Q psy13368 20 LVGGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQ 56 (182)
Q Consensus 20 ~~~~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~ 56 (182)
++...+.++|+|+.|.+.++.++.+.+.+ +.+|..+.
T Consensus 11 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~ 48 (297)
T 3b9p_A 11 IVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFT 48 (297)
T ss_dssp TBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSC
T ss_pred hccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHh
Confidence 44567899999999999999999998766 55565443
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=77.59 E-value=0.99 Score=42.43 Aligned_cols=57 Identities=25% Similarity=0.471 Sum_probs=42.5
Q ss_pred cCCCCCcccccCcChHHHHHHHHHHHHH-hcCchhhccCCceEcccccccC----CHHHHHHH
Q psy13368 21 VGGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKYTPSEQKLY----NKEELFDR 78 (182)
Q Consensus 21 ~~~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~alG~~~~Pkd~ll~----t~~~l~~~ 78 (182)
+.+.+.++|+|+.|++.++.++.+++.| +++|..+..+|... |...+|+ |.++.+.+
T Consensus 468 ~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~-~~~vLL~GppGtGKT~Lak 529 (806)
T 1ypw_A 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTP-SKGVLFYGPPGCGKTLLAK 529 (806)
T ss_dssp CCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCC-CCCCCCBCCTTSSHHHHHH
T ss_pred cccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCC-CceeEEECCCCCCHHHHHH
Confidence 3467899999999999999999998877 77788887777642 4555555 44444444
No 31
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=74.27 E-value=3.1 Score=35.07 Aligned_cols=38 Identities=39% Similarity=0.580 Sum_probs=29.4
Q ss_pred ccCCCCCcccccCcChHHHHHHHHHHHHH-hcCchhhcc
Q psy13368 20 LVGGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQN 57 (182)
Q Consensus 20 ~~~~~~~~~f~dv~g~~~a~~El~~~V~~-l~~P~~~~a 57 (182)
++...+.++|+|+.|.+.++..+.+.+.+ +.+|..+..
T Consensus 105 ~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~ 143 (389)
T 3vfd_A 105 IVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTG 143 (389)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCG
T ss_pred hhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcc
Confidence 44556889999999999999999998766 555555443
No 32
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=68.60 E-value=3.3 Score=42.31 Aligned_cols=65 Identities=14% Similarity=0.191 Sum_probs=34.2
Q ss_pred CCCCcccccCcChHHHHHHHHHHHHH-hcC----------chhhcc------CCce-----E----cccc--cccC----
Q psy13368 23 GGRGVKFSDVAGLREAKVEVMEFVDY-LKR----------PEYYQN------LGAK-----Y----TPSE--QKLY---- 70 (182)
Q Consensus 23 ~~~~~~f~dv~g~~~a~~El~~~V~~-l~~----------P~~~~a------lG~~-----~----~Pkd--~ll~---- 70 (182)
..+.++|+||+|++++|.++.+.|.| |+. |+.++. .|.. . .|++ .+++
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 35669999999999999999999888 533 445544 2322 0 2565 4444
Q ss_pred CHHHHHHHHHHHhHHHH
Q psy13368 71 NKEELFDRMCMALGGRA 87 (182)
Q Consensus 71 t~~~l~~~i~v~laGra 87 (182)
|.+++++.-...-++..
T Consensus 1093 ~GKT~la~~~~~~~~~~ 1109 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQRE 1109 (1706)
T ss_dssp SSHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHhhhc
Confidence 77788777555545443
No 33
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=52.35 E-value=37 Score=20.59 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHhhhh
Q psy13368 143 KRLAALMDEEASKLIAQCYMHTEKVLRDNMDKLTLSF 179 (182)
Q Consensus 143 ~~~~~~id~ev~~ll~~a~~~a~~iL~~~r~~le~l~ 179 (182)
++....-..++.+|+.++...|.+|+.+-+...+.+.
T Consensus 13 ~kI~~eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae~~~ 49 (52)
T 2kk7_A 13 SKILDDAKAEANKIISEAEAEKAKILEKAKEEAEKRK 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566778888888888888888888777666543
No 34
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=24.78 E-value=1.2e+02 Score=18.20 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcHHHHhhhh
Q psy13368 149 MDEEASKLIAQCYMHTEKVLRDNMDKLTLSF 179 (182)
Q Consensus 149 id~ev~~ll~~a~~~a~~iL~~~r~~le~l~ 179 (182)
++.=+.+|++++...|..||.+-+..-+.++
T Consensus 8 le~i~~kI~~eA~~eA~~Il~eA~~eA~~Ii 38 (52)
T 2kk7_A 8 VDKIKSKILDDAKAEANKIISEAEAEKAKIL 38 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888899999999999988777666554
Done!