RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13368
(182 letters)
>gnl|CDD|216502 pfam01434, Peptidase_M41, Peptidase family M41.
Length = 212
Score = 132 bits (335), Expect = 3e-39
Identities = 47/131 (35%), Positives = 77/131 (58%), Gaps = 11/131 (8%)
Query: 56 QNLG-AKYTPSEQK-LYNKEELFDRMCMALGGRAAEAIVFN--RITSGAQNDLKKVTEMA 111
Q LG ++ P E K LY K +L R+ +ALGGRAAE ++F +T+GA NDL++ T++A
Sbjct: 61 QALGYTQFLPEEDKLLYTKSQLLARIDVALGGRAAEELIFGDDEVTTGASNDLEQATKIA 120
Query: 112 NMQIRQFGMNENIGLVSFPKDDNR-------QSIRPYSKRLAALMDEEASKLIAQCYMHT 164
+ +FGM++ +G VS D + YS+ A ++DEE +L+ + Y
Sbjct: 121 RQMVTEFGMSDKLGPVSLEDSDGEVFLGRGMGKRKEYSEETADIIDEEVRRLLEEAYERA 180
Query: 165 EKVLRDNMDKL 175
+++L +N D+L
Sbjct: 181 KEILTENRDEL 191
>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH.
HflB(FtsH) is a pleiotropic protein required for correct
cell division in bacteria. It has ATP-dependent zinc
metalloprotease activity. It was formerly designated
cell division protein FtsH [Cellular processes, Cell
division, Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 495
Score = 112 bits (282), Expect = 2e-29
Identities = 45/131 (34%), Positives = 76/131 (58%), Gaps = 9/131 (6%)
Query: 56 QNLG-AKYTPSEQK-LYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANM 113
Q LG ++ P E K LY K +L ++ + LGGRAAE I+F +T+GA ND+K+ T +A
Sbjct: 344 QALGYTQFLPEEDKYLYTKSQLLAQIAVLLGGRAAEEIIFGEVTTGASNDIKQATNIARA 403
Query: 114 QIRQFGMNENIGLVSFPKDDNR-------QSIRPYSKRLAALMDEEASKLIAQCYMHTEK 166
+ ++GM++ +G V++ D + YS+ A +DEE ++I + Y ++
Sbjct: 404 MVTEWGMSDKLGPVAYGSDGGDVFLGRGFAKAKEYSEETAREIDEEVKRIIEEAYKRAKQ 463
Query: 167 VLRDNMDKLTL 177
+L +N D+L L
Sbjct: 464 ILTENRDELEL 474
Score = 61.1 bits (149), Expect = 2e-11
Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 10 SRAKFTLVDPLVGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
S+AK L V F DVAG+ EAK E+ME VD+LK P + LGAK
Sbjct: 40 SKAKL-----LNEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAK 86
>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational
modification, protein turnover, chaperones].
Length = 596
Score = 95.5 bits (238), Expect = 2e-23
Identities = 44/121 (36%), Positives = 72/121 (59%), Gaps = 7/121 (5%)
Query: 62 YTPSEQK-LYNKEELFDRMCMALGGRAAEAIVFNR-ITSGAQNDLKKVTEMANMQIRQFG 119
+ P E K L +KEEL DR+ + LGGRAAE ++F IT+GA NDL+K T++A + ++G
Sbjct: 446 FLPEEDKYLMSKEELLDRIDVLLGGRAAEELIFGYEITTGASNDLEKATDLARAMVTEYG 505
Query: 120 MNENIGLVSFPKDD-----NRQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDK 174
M+ +G V++ + + Q + YS+ A +D E +I + Y +++L +N D
Sbjct: 506 MSAKLGPVAYEQVEGVFLGRYQKAKNYSEETAQEIDREVKDIIDEAYERAKELLNENKDA 565
Query: 175 L 175
L
Sbjct: 566 L 566
Score = 54.6 bits (132), Expect = 4e-09
Identities = 27/52 (51%), Positives = 33/52 (63%), Gaps = 5/52 (9%)
Query: 10 SRAKFTLVDPLVGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
S+AK L D V F+DVAG+ EAK E+ E VD+LK P+ YQ LGAK
Sbjct: 135 SKAKLYLED-----QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAK 181
>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated.
Length = 638
Score = 75.9 bits (187), Expect = 2e-16
Identities = 43/128 (33%), Positives = 75/128 (58%), Gaps = 15/128 (11%)
Query: 62 YTPSE-QKLYNKEELFDRMCMALGGRAAEAIVFN--RITSGAQNDLKKVTEMANMQIRQF 118
+TP E Q L ++ ++ R+ ALGGRAAE +VF +T+GA NDL++VT +A + +F
Sbjct: 478 FTPEEDQSLVSRSQILARIVGALGGRAAEEVVFGSTEVTTGASNDLQQVTNLARQMVTRF 537
Query: 119 GMNENIGLVSFPKDDNRQ-----SIR---PYSKRLAALMDEEASKLIAQCYMHTEKVLRD 170
GM+ +IG +S +++ ++ YS+ +A +D E ++ CY + ++L+D
Sbjct: 538 GMS-SIGPISLESNNSTDPFLGRFMQRNSEYSEEIADKIDMEVRSILHTCYQYAYQILKD 596
Query: 171 N---MDKL 175
N +D L
Sbjct: 597 NRVLIDLL 604
Score = 48.5 bits (116), Expect = 4e-07
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 26 GVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKY 62
G+ F D+AG+ EAK E E V +LK+PE + +GAK
Sbjct: 179 GITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKI 215
>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed.
Length = 644
Score = 54.3 bits (130), Expect = 5e-09
Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 9/114 (7%)
Query: 71 NKEELFDRMCMALGGRAAEAIVF--NRITSGAQNDLKKVTEMANMQIRQFGMNENIGLVS 128
++++L ++ GGR AE I++ +++GA ND+K T +A + Q+G +E +G +
Sbjct: 458 SRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLL 517
Query: 129 FPKDDNR-------QSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL 175
+ +++ + S A ++D+E LI + Y ++L DNMD L
Sbjct: 518 YAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLLTDNMDIL 571
Score = 43.1 bits (101), Expect = 3e-05
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 29 FSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
F+DVAG EAK EV E V+YL+ P +Q LG K
Sbjct: 151 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGK 183
>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily. This
subfamily of the AAA family ATPases includes two members
each from three archaeal species. It also includes yeast
CDC48 (cell division control protein 48) and the human
ortholog, transitional endoplasmic reticulum ATPase
(valosin-containing protein). These proteins in
eukaryotes are involved in the budding and transfer of
membrane from the transitional endoplasmic reticulum to
the Golgi apparatus.
Length = 733
Score = 33.0 bits (75), Expect = 0.087
Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 27 VKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLG 59
V++SD+ GL E K E+ E V++ LK PE ++ +G
Sbjct: 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG 483
Score = 29.9 bits (67), Expect = 0.73
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 27 VKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLG 59
V + D+ GL+EAK ++ E V+ +K PE +++LG
Sbjct: 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG 208
>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational
modification, protein turnover, chaperones].
Length = 494
Score = 32.9 bits (75), Expect = 0.087
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 27 VKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLG 59
V D+ GL EAK E+ E ++ LKRPE ++ LG
Sbjct: 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLG 272
>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 406
Score = 29.9 bits (68), Expect = 0.78
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 17 VDPLVGG-----GRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAK 61
VDP V V + D+ GL E E+ E V+ LK PE ++ LG
Sbjct: 133 VDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGID 183
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like
protein; Provisional.
Length = 438
Score = 29.4 bits (66), Expect = 1.1
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 17 VDPLVGGGRGVK-----FSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAK 61
VDPLV + K ++D+ GL + E+ E V+ L PE Y ++G K
Sbjct: 165 VDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIK 215
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 29.4 bits (67), Expect = 1.1
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 26 GVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLG 59
V + D+ GL E EV E V+ LK+PE ++ +G
Sbjct: 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVG 161
>gnl|CDD|106567 PRK13622, psbV, cytochrome c-550; Provisional.
Length = 180
Score = 28.1 bits (62), Expect = 2.2
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGA--KYTPSEQ 67
+K SD+ G + V+ VDY+K P Y + + +Y P+ Q
Sbjct: 90 LKLSDLEGATPPRDNVLAIVDYIKNPVTYDGVESLLEYHPNTQ 132
>gnl|CDD|237859 PRK14908, PRK14908, glycyl-tRNA synthetase; Provisional.
Length = 1000
Score = 28.1 bits (63), Expect = 3.3
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
Query: 18 DPLVGGGRGV---KFSDVAGLREA--KVEVMEFVDYLKRPEYYQNLGAKYTPSEQKLYNK 72
D +V G V + +D A L +A K + FV+ LK Y++ LG+ E+ +
Sbjct: 627 DEIVRGNEKVLRARLTDGAFLFKADLKTPLETFVEKLKSVTYFEALGSLADKVERIKAHA 686
Query: 73 EELFDRMCMALGGRAAEAIVFNRITSGAQNDL--KKVTEMANMQ 114
EEL + ++ A + DL + V E +Q
Sbjct: 687 EELAALLPLSARETLDRAAEL------CKFDLVSQMVNEFPELQ 724
>gnl|CDD|223950 COG1019, COG1019, Predicted nucleotidyltransferase [General
function prediction only].
Length = 158
Score = 26.5 bits (59), Expect = 5.6
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 16/79 (20%)
Query: 79 MCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNENIGLVS--FPKDDNRQ 136
M +A+GG F+R+ G + L+ E G IGL S K ++
Sbjct: 6 MKVAVGG------TFDRLHDGHKKLLEVAFE--------IGDRVTIGLTSDELAKKKKKE 51
Query: 137 SIRPYSKRLAALMDEEASK 155
I PY RL L + S
Sbjct: 52 KIEPYEVRLRNLRNFLESI 70
>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family. Many
proteins may score above the trusted cutoff because an
internal.
Length = 364
Score = 27.1 bits (60), Expect = 6.0
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 18 DPLVGGGR-----GVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLG 59
DPLV G V + D+ GL E E+ E V+ LK PE ++ +G
Sbjct: 105 DPLVKGMEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVG 152
>gnl|CDD|234834 PRK00777, PRK00777, phosphopantetheine adenylyltransferase;
Provisional.
Length = 153
Score = 26.3 bits (59), Expect = 6.1
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 16/72 (22%)
Query: 82 ALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNENIGLVS--FPKDDNRQSIR 139
A+GG F+ + G + L+K E G IGL S F K + +R
Sbjct: 5 AVGG------TFDPLHDGHRALLRKAFE--------LGKRVTIGLTSDEFAKSYKKHKVR 50
Query: 140 PYSKRLAALMDE 151
PY RL L
Sbjct: 51 PYEVRLKNLKKF 62
>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 368
Score = 27.1 bits (60), Expect = 6.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 25 RGVKFSDVAGLREAKVEVMEFVDYLKRPE 53
+ DV G EAK + ++YL+ PE
Sbjct: 116 SDITLDDVIGQEEAKRKCRLIMEYLENPE 144
>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like
protein; Provisional.
Length = 398
Score = 27.0 bits (60), Expect = 6.9
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 27 VKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLG 59
V +SD+ GL K E+ E V+ L PE Y+ +G
Sbjct: 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG 175
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 27.1 bits (60), Expect = 7.6
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 86 RAAEAIVFNRITSGAQNDLKKVT------EMANMQIRQFGMNEN-IGL-VSFPKDDNRQS 137
+AA A+V R SG ++ L VT M MQ R G+ N I L V P R S
Sbjct: 3510 QAAWALVLRRY-SGDRDVLFGVTVAGRPVSMPQMQ-RTVGLFINSIALRVQLPAAGQRCS 3567
Query: 138 IRPYSKRL 145
+R + + L
Sbjct: 3568 VRQWLQGL 3575
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.377
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,312,487
Number of extensions: 864999
Number of successful extensions: 804
Number of sequences better than 10.0: 1
Number of HSP's gapped: 796
Number of HSP's successfully gapped: 26
Length of query: 182
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 91
Effective length of database: 6,901,388
Effective search space: 628026308
Effective search space used: 628026308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)