RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13368
(182 letters)
>2di4_A Zinc protease, cell division protein FTSH homolog;
metalloproteinase, hexamer-ring, hydrolase; 2.79A
{Aquifex aeolicus} SCOP: a.269.1.1
Length = 238
Score = 114 bits (287), Expect = 4e-32
Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 10/123 (8%)
Query: 62 YTPSEQK-LYNKEELFDRMCMALGGRAAEAIVFNR--ITSGAQNDLKKVTEMA-NMQIRQ 117
P E K +Y+K++L++++ + LGGRAAE + F + IT+GA+NDL++ T++A M +
Sbjct: 56 QLPIEDKHIYDKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRM-VSM 114
Query: 118 FGMNENIGLVSFPKDDN-----RQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNM 172
+GM++ +G ++ + N + S L +DEE ++I + Y + ++ +
Sbjct: 115 WGMSDKVGPIAIRRVANPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKAIVEEYK 174
Query: 173 DKL 175
+ L
Sbjct: 175 EPL 177
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 116 bits (293), Expect = 4e-31
Identities = 36/116 (31%), Positives = 67/116 (57%), Gaps = 4/116 (3%)
Query: 64 PSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNEN 123
+ ++++ L D++ +AL GRAAE IVF+ +T+GA+ND ++ TE+A I ++GM+
Sbjct: 329 REDMLHWSRKRLLDQIAVALAGRAAEEIVFDDVTTGAENDFRQATELARRMITEWGMHPE 388
Query: 124 IGLVSFPKDDNR----QSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL 175
G V++ ++ +R YS+ A +DE +LI + Y + +L + + L
Sbjct: 389 FGPVAYAVREDTYLGGYDVRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVL 444
Score = 57.6 bits (140), Expect = 2e-10
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 10 SRAKFTLVDPLVGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
SRA+ ++ V F DVAG EAK E+ E V++LK P + +GA+
Sbjct: 17 SRAR------VLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGAR 62
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 114 bits (288), Expect = 1e-30
Identities = 43/122 (35%), Positives = 74/122 (60%), Gaps = 8/122 (6%)
Query: 62 YTPSEQK-LYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGM 120
+ P E K L ++ EL D++ LGGRAAE +VF +TSGA ND+++ TE+A + Q GM
Sbjct: 313 HLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEIARNMVCQLGM 372
Query: 121 NENIGLVSFPKDDNR-------QSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMD 173
+E +G +++ K++ +R YS+ +A+ +DEE K++ CY ++++R
Sbjct: 373 SEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIRKYRK 432
Query: 174 KL 175
+L
Sbjct: 433 QL 434
Score = 55.7 bits (135), Expect = 1e-09
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
V F DV G EA E+ E V++LK P + +GA+
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGAR 47
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 63.4 bits (155), Expect = 9e-13
Identities = 25/36 (69%), Positives = 28/36 (77%)
Query: 26 GVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
GV F DVAG+ EAK+EV EFVDYLK PE + LGAK
Sbjct: 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAK 37
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 55.0 bits (133), Expect = 1e-09
Identities = 23/35 (65%), Positives = 27/35 (77%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
V+F D+AG EAK EV+E VD+LK PE Y NLGAK
Sbjct: 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAK 42
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 54.7 bits (132), Expect = 2e-09
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 10 SRAKFTLVDPLVGGGRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
SRA+ ++ V F DVAG EAK E+ E V++LK P + +GA+
Sbjct: 26 SRAR------VLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGAR 71
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 52.3 bits (126), Expect = 8e-09
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
F+DVAG EAK EV E V+YL+ P +Q LG K
Sbjct: 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGK 43
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 51.9 bits (125), Expect = 1e-08
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
V F DVAG EAK E+ E V++LK P + +GA+
Sbjct: 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGAR 47
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 40.2 bits (94), Expect = 1e-04
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 5 FQNQMSRAKFTLVDPLVGGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGA 60
F+N S +++ +V G VKF D+AG AK + E V RPE + L A
Sbjct: 90 FRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA 146
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding,
nucleotide-binding, hydrolase; 2.70A {Drosophila
melanogaster}
Length = 297
Score = 40.0 bits (94), Expect = 2e-04
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 26 GVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGA 60
V+++D+AG AK + E V RPE + L A
Sbjct: 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRA 52
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 2e-04
Identities = 25/152 (16%), Positives = 56/152 (36%), Gaps = 53/152 (34%)
Query: 2 FLGFQNQMSRAKFTL----VDPLVGGGRGVK---FSDVAGLREAKVEVMEFVDYLKRPEY 54
F+G + + +L ++ + GV S ++ L + +V+ ++V+
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS-ISNLTQEQVQ--DYVNKT----- 356
Query: 55 YQNLGAKYTPSEQKLYNKEELFDRMCMAL--GGRAAEAIVFNRITSGAQNDLKKVTEMAN 112
N + P+ +++ ++L G + N + SG L + N
Sbjct: 357 --N---SHLPAGKQVE----------ISLVNGAK-------NLVVSGPPQSLYGL----N 390
Query: 113 MQIRQFGMNENIGLVSFPKDDNRQSIRPYSKR 144
+ +R+ P + QS P+S+R
Sbjct: 391 LTLRK---------AKAPSGLD-QSRIPFSER 412
Score = 30.0 bits (67), Expect = 0.48
Identities = 26/153 (16%), Positives = 52/153 (33%), Gaps = 43/153 (28%)
Query: 35 LREAKVEVMEFVDYLKRPEYYQNLGAKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFN 94
L+E +F L PE + A P+ EL + LG V +
Sbjct: 33 LQE------QFNKIL--PEPTEGFAADDEPTTP-----AELVGKF---LG------YVSS 70
Query: 95 RITSGAQNDLKKVTEMANMQIRQFGMNENIGLVSFPKDDNRQSIRPYSKRLAALMDEE-- 152
+ +V + + +F EN + + ++ ++ A L+ E
Sbjct: 71 LVEPSKVGQFDQVLNLC---LTEF---EN----CYLEGNDIHAL------AAKLLQENDT 114
Query: 153 ---ASKLIAQCYMHTEKVLRDNMDKLTLSFLSK 182
+K + + Y+ + + DK + S L +
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFR 147
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 39.4 bits (92), Expect = 3e-04
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 26 GVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGA 60
V + D+AG+ AK + E V + + RP+ + L
Sbjct: 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRG 115
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 38.5 bits (90), Expect = 5e-04
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 26 GVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQ 56
VK+ DVAGL AK + E V +K P ++
Sbjct: 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFK 45
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 37.7 bits (88), Expect = 9e-04
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 27 VKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNL 58
VK+SDVAGL AK + E V +K P +
Sbjct: 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK 41
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A
{Mus musculus}
Length = 301
Score = 36.8 bits (86), Expect = 0.002
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 27 VKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAK 61
V + D+ GL + K E+ E V Y ++ P+ + G
Sbjct: 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT 47
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 37.1 bits (86), Expect = 0.002
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 27 VKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAK 61
V + DV G R+ ++ E V+ L+ P ++ +G K
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVK 236
Score = 35.5 bits (82), Expect = 0.007
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 27 VKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAK 61
V + D+ GL + K E+ E V Y ++ P+ + G
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT 509
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain,
beta domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 36.7 bits (85), Expect = 0.002
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 4 GFQNQMSRAKFTLVDPLVGGGRGVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQ 56
+ + L ++ VK+ DVAGL AK + E V +K P ++
Sbjct: 25 NGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK 78
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 35.9 bits (83), Expect = 0.004
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 26 GVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAK 61
V + D+ G R+ ++ E V+ L+ P ++ +G K
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVK 236
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 35.6 bits (83), Expect = 0.005
Identities = 7/36 (19%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 27 VKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAK 61
V ++D+ L + + E+ + ++ P+ ++ LG
Sbjct: 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLV 42
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 35.7 bits (82), Expect = 0.005
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 26 GVKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNL 58
VK+SDVAGL AK + E V +K P +
Sbjct: 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK 163
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 34.2 bits (79), Expect = 0.014
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 27 VKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLG 59
V++ D+ GL + E+ E V+ LK PE ++ +G
Sbjct: 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVG 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.13
Identities = 32/217 (14%), Positives = 58/217 (26%), Gaps = 81/217 (37%)
Query: 35 LREAKVEVMEFVDYLKRPEY--------YQNLG-----AKYTPSEQKLYNKEELFDRMC- 80
L + + V +FV+ + R Y + Y +LYN ++F +
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 81 --------------------------MALG-GR---AAEAI-------VFNR----ITSG 99
+ G G+ A + + +
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVL-GSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 100 AQNDLKKVTEMANMQIRQFGMNENIGL-----VSFPKDDNRQSIR------PYSKRLAAL 148
N + V EM + Q N + + +R PY L L
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 149 MDEEASKLIA----QCYMHTEKVL---RD--NMDKLT 176
++ + +K C K+L R D L+
Sbjct: 251 LNVQNAKAWNAFNLSC-----KILLTTRFKQVTDFLS 282
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 28.9 bits (64), Expect = 0.82
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 29 FSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKYTP 64
++ GL+ K + E L Q LG +
Sbjct: 30 DRELIGLKPVKDRIRETAALLLVERARQKLGLAHET 65
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase
system, phosphotransferase; 1.70A {Escherichia coli}
SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Length = 135
Score = 27.6 bits (61), Expect = 1.7
Identities = 9/50 (18%), Positives = 18/50 (36%)
Query: 108 TEMANMQIRQFGMNENIGLVSFPKDDNRQSIRPYSKRLAALMDEEASKLI 157
++ G EN+G + F +N +++ A +D L
Sbjct: 14 EQLLKTAEMLLGEQENVGWIDFVPGENAETLIEKYNAQLAKLDTTKGVLF 63
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics,
structural genomics consortium, disease mutation,
phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens}
PDB: 3pdx_A*
Length = 427
Score = 27.6 bits (62), Expect = 2.6
Identities = 6/43 (13%), Positives = 13/43 (30%), Gaps = 9/43 (20%)
Query: 24 GRGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKYTPSE 66
G+ ++ G ++ E+ YY A +
Sbjct: 87 GKYNGYAPSIGFLSSREEIA---------SYYHCPEAPLEAKD 120
>3ipr_A PTS system, IIA component; stranded parallel beta-sheet flanked by
3 alpha-helices on EACH SIDE, transferase; 2.50A
{Enterococcus faecalis}
Length = 150
Score = 26.5 bits (58), Expect = 4.0
Identities = 9/50 (18%), Positives = 17/50 (34%)
Query: 108 TEMANMQIRQFGMNENIGLVSFPKDDNRQSIRPYSKRLAALMDEEASKLI 157
+ G ENI V+ D+ Q++ K + + L+
Sbjct: 14 DGAKDAATVIMGATENIETVNLNSGDDVQALGGQIKTAIENVQQGDGVLV 63
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 7.0
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 135 RQSIRPYSKRLAALMDEEASKL 156
+Q+++ L D+ A L
Sbjct: 19 KQALKKLQASLKLYADDSAPAL 40
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester,
structural genomi montreal-kingston bacterial structural
genomics initiative; 1.90A {Escherichia coli} SCOP:
c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Length = 531
Score = 26.2 bits (58), Expect = 7.0
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
Query: 15 TLVDPLVGGGRGVKFSDVAGLREAKVEVMEF--VDYL 49
T VDP GG+ + + +E ++++EF +YL
Sbjct: 143 TFVDPRQQGGKLNEVT-----KEDLIKLVEFDNKEYL 174
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism,
pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A
{Trypanosoma cruzi} SCOP: c.67.1.1
Length = 416
Score = 26.0 bits (58), Expect = 7.0
Identities = 5/39 (12%), Positives = 12/39 (30%), Gaps = 2/39 (5%)
Query: 28 KFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKYTPSE 66
+ G EA+ V + + + + L +
Sbjct: 70 GYFPTVGSPEAREAVATW--WRNSFVHKEELKSTIVKDN 106
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.377
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,764,541
Number of extensions: 163063
Number of successful extensions: 403
Number of sequences better than 10.0: 1
Number of HSP's gapped: 396
Number of HSP's successfully gapped: 41
Length of query: 182
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 94
Effective length of database: 4,244,745
Effective search space: 399006030
Effective search space used: 399006030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)