RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13368
         (182 letters)



>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH,
           C-terminal domain {Thermotoga maritima [TaxId: 2336]}
          Length = 193

 Score = 88.2 bits (218), Expect = 8e-23
 Identities = 40/117 (34%), Positives = 72/117 (61%), Gaps = 7/117 (5%)

Query: 66  EQKLYNKEELFDRMCMALGGRAAEAIVFNRITSGAQNDLKKVTEMANMQIRQFGMNENIG 125
           ++ L ++ EL D++   LGGRAAE +VF  +TSGA ND+++ TE+A   + Q GM+E +G
Sbjct: 53  DKYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEIARNMVCQLGMSEELG 112

Query: 126 LVSFPKDDNR-------QSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL 175
            +++ K++           +R YS+ +A+ +DEE  K++  CY   ++++R    +L
Sbjct: 113 PLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQL 169


>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH,
           C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
          Length = 202

 Score = 62.1 bits (150), Expect = 7e-13
 Identities = 32/113 (28%), Positives = 66/113 (58%), Gaps = 7/113 (6%)

Query: 70  YNKEELFDRMCMALGGRAAEAIVFNR--ITSGAQNDLKKVTEMANMQIRQFGMNENIGLV 127
           Y+K++L++++ + LGGRAAE + F +  IT+GA+NDL++ T++A   +  +GM++ +G +
Sbjct: 56  YDKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPI 115

Query: 128 SFPKDDN-----RQSIRPYSKRLAALMDEEASKLIAQCYMHTEKVLRDNMDKL 175
           +  +  N       +    S  L   +DEE  ++I + Y   + ++ +  + L
Sbjct: 116 AIRRVANPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEPL 168


>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
          {Thermus thermophilus [TaxId: 274]}
          Length = 247

 Score = 49.5 bits (118), Expect = 3e-08
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
          V F DVAG  EAK E+ E V++LK P  +  +GA+
Sbjct: 6  VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGAR 40


>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
          {Escherichia coli [TaxId: 562]}
          Length = 256

 Score = 49.4 bits (118), Expect = 4e-08
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 27 VKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAK 61
            F+DVAG  EAK EV E V+YL+ P  +Q LG K
Sbjct: 9  TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGK 43


>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 258

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 27 VKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKY 62
          V + DV G R+   ++ E V+  L+ P  ++ +G K 
Sbjct: 1  VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKP 37


>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 265

 Score = 44.0 bits (103), Expect = 3e-06
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 27 VKFSDVAGLREAKVEVMEFVDY-LKRPEYYQNLGAKY 62
          V + D+ GL + K E+ E V Y ++ P+ +   G   
Sbjct: 4  VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTP 40


>d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus
           pneumoniae [TaxId: 1313]}
          Length = 388

 Score = 26.1 bits (57), Expect = 2.7
 Identities = 12/101 (11%), Positives = 30/101 (29%), Gaps = 2/101 (1%)

Query: 39  KVEVMEFVDYLKRPEYYQNLGAKYTPSEQKLYNKEELFDRMCMALGGRAAEAIVFNRITS 98
           K   +   + ++     +       P    L    +           R++      R+  
Sbjct: 83  KWLDIMSAEDIEDRLKSKRKITHPRPGHADLVGGIKYRFDDLRNSLERSSARETTMRVAV 142

Query: 99  GAQNDLKKVTEMANMQIRQFGMNENIGLVSFPKDDNRQSIR 139
           GA    K++    +M+I    +      +  P++     I+
Sbjct: 143 GAV--AKRLLAELDMEIANHVVVFGGKEIDVPENLTVAEIK 181


>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 253

 Score = 25.1 bits (53), Expect = 5.5
 Identities = 4/41 (9%), Positives = 13/41 (31%)

Query: 25 RGVKFSDVAGLREAKVEVMEFVDYLKRPEYYQNLGAKYTPS 65
                 V G + + +++  ++   +  +      A    S
Sbjct: 9  APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGS 49


>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 106

 Score = 24.0 bits (52), Expect = 6.3
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 94  NRITSGAQNDLKKVTEMANMQIRQFGMNENIGLVSFPKDDNRQSIRPYSKRLAALMDEEA 153
            RI  GA   +  V E    +I +  +N         +D+ +  + P    LA   DEE 
Sbjct: 28  YRIGVGAPVYMAAVLEYLTAEILELAVNA-------ARDNKKGRVTPRHILLAVANDEEL 80

Query: 154 SKLI 157
           ++L+
Sbjct: 81  NQLL 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0435    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 650,850
Number of extensions: 28866
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 15
Length of query: 182
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,309,196
Effective search space: 133537992
Effective search space used: 133537992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.8 bits)