Query psy13369
Match_columns 311
No_of_seqs 234 out of 2494
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 17:43:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13369.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13369hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0406|consensus 100.0 1.9E-29 4.1E-34 211.3 13.0 187 18-213 6-205 (231)
2 KOG0868|consensus 100.0 1E-28 2.3E-33 194.4 7.8 175 19-206 3-194 (217)
3 PRK09481 sspA stringent starva 99.9 7.3E-27 1.6E-31 199.4 9.7 177 20-212 9-195 (211)
4 PLN02473 glutathione S-transfe 99.9 9.7E-25 2.1E-29 186.7 11.0 181 21-211 2-203 (214)
5 PRK15113 glutathione S-transfe 99.9 3.2E-24 7E-29 183.4 11.1 176 19-211 3-200 (214)
6 TIGR01262 maiA maleylacetoacet 99.9 2.2E-24 4.7E-29 183.9 9.4 177 23-212 1-197 (210)
7 PRK13972 GSH-dependent disulfi 99.9 6.4E-24 1.4E-28 181.8 9.2 171 22-210 2-196 (215)
8 COG0625 Gst Glutathione S-tran 99.9 3.3E-23 7.2E-28 176.8 11.7 173 22-208 1-193 (211)
9 PRK11752 putative S-transferas 99.9 4.1E-23 8.9E-28 181.8 11.6 183 17-210 40-249 (264)
10 PRK10542 glutathionine S-trans 99.9 1.1E-23 2.4E-28 178.3 7.4 171 22-211 1-189 (201)
11 PRK10357 putative glutathione 99.9 9.4E-23 2E-27 172.8 12.8 177 22-211 1-192 (202)
12 PLN02395 glutathione S-transfe 99.9 1E-22 2.2E-27 174.3 8.8 180 21-211 2-202 (215)
13 PRK10387 glutaredoxin 2; Provi 99.9 3.1E-22 6.7E-27 170.6 8.0 168 22-213 1-207 (210)
14 PTZ00057 glutathione s-transfe 99.9 4.4E-22 9.6E-27 169.1 8.2 179 20-216 3-196 (205)
15 PLN02378 glutathione S-transfe 99.9 5.1E-21 1.1E-25 163.5 12.1 165 28-212 18-192 (213)
16 TIGR00862 O-ClC intracellular 99.8 5.5E-21 1.2E-25 164.2 10.2 166 27-211 16-212 (236)
17 PRK09481 sspA stringent starva 99.8 2.5E-20 5.4E-25 159.1 12.9 99 211-310 9-107 (211)
18 TIGR02182 GRXB Glutaredoxin, G 99.8 6.8E-21 1.5E-25 162.2 7.1 173 23-216 1-209 (209)
19 KOG0867|consensus 99.8 3.1E-20 6.7E-25 159.6 9.9 178 21-209 2-199 (226)
20 PLN02817 glutathione dehydroge 99.8 4.3E-20 9.4E-25 162.0 10.9 162 29-211 72-243 (265)
21 KOG0868|consensus 99.8 5.2E-20 1.1E-24 145.4 9.2 99 210-309 3-105 (217)
22 PRK15113 glutathione S-transfe 99.8 1.8E-19 3.9E-24 154.1 12.9 100 210-310 3-110 (214)
23 KOG0406|consensus 99.8 2.4E-19 5.3E-24 150.5 11.4 99 211-310 8-108 (231)
24 PLN02473 glutathione S-transfe 99.8 4.6E-18 9.9E-23 145.3 11.9 99 212-310 2-104 (214)
25 PF13417 GST_N_3: Glutathione 99.7 4.4E-18 9.4E-23 120.8 8.0 74 215-288 1-74 (75)
26 COG0625 Gst Glutathione S-tran 99.7 1.1E-17 2.3E-22 142.8 11.2 97 213-310 1-103 (211)
27 PRK13972 GSH-dependent disulfi 99.7 2.8E-17 6.1E-22 140.6 11.7 94 213-310 2-105 (215)
28 PRK10357 putative glutathione 99.7 2.8E-17 6.1E-22 139.2 11.3 97 213-310 1-98 (202)
29 cd03059 GST_N_SspA GST_N famil 99.7 2.9E-17 6.2E-22 115.8 9.1 73 213-285 1-73 (73)
30 cd03052 GST_N_GDAP1 GST_N fami 99.7 2.1E-17 4.6E-22 116.4 8.3 70 213-282 1-73 (73)
31 PLN02395 glutathione S-transfe 99.7 6.4E-17 1.4E-21 138.3 11.9 98 212-310 2-103 (215)
32 TIGR01262 maiA maleylacetoacet 99.7 5.9E-17 1.3E-21 138.0 11.4 96 214-310 1-100 (210)
33 cd03061 GST_N_CLIC GST_N famil 99.7 4.7E-17 1E-21 118.3 8.6 70 219-288 20-89 (91)
34 cd03058 GST_N_Tau GST_N family 99.7 1.1E-16 2.3E-21 113.3 9.0 73 213-285 1-74 (74)
35 cd03041 GST_N_2GST_N GST_N fam 99.7 9.5E-17 2.1E-21 114.4 8.4 73 213-285 2-77 (77)
36 cd03060 GST_N_Omega_like GST_N 99.7 1.1E-16 2.4E-21 112.2 8.5 69 213-281 1-70 (71)
37 cd03045 GST_N_Delta_Epsilon GS 99.7 1E-16 2.3E-21 113.3 8.4 71 213-283 1-74 (74)
38 PRK10542 glutathionine S-trans 99.7 1.1E-16 2.3E-21 135.5 10.0 96 213-310 1-102 (201)
39 PRK11752 putative S-transferas 99.7 3E-16 6.4E-21 138.3 11.9 110 197-310 22-151 (264)
40 cd03053 GST_N_Phi GST_N family 99.7 2.4E-16 5.1E-21 112.1 8.7 72 213-284 2-76 (76)
41 cd03076 GST_N_Pi GST_N family, 99.7 1.6E-16 3.5E-21 112.0 6.9 72 213-284 2-73 (73)
42 cd03050 GST_N_Theta GST_N fami 99.7 4E-16 8.7E-21 110.9 9.0 73 213-285 1-76 (76)
43 cd03055 GST_N_Omega GST_N fami 99.7 4.8E-16 1E-20 114.0 9.6 78 205-282 11-89 (89)
44 KOG0867|consensus 99.7 7.4E-16 1.6E-20 132.5 11.4 100 211-310 1-104 (226)
45 PLN02907 glutamate-tRNA ligase 99.7 5.2E-16 1.1E-20 152.3 11.6 153 22-211 3-158 (722)
46 cd03048 GST_N_Ure2p_like GST_N 99.7 6.4E-16 1.4E-20 111.3 9.1 73 213-286 2-80 (81)
47 KOG1695|consensus 99.6 7.6E-16 1.7E-20 128.6 10.1 180 21-217 3-198 (206)
48 cd03056 GST_N_4 GST_N family, 99.6 6.9E-16 1.5E-20 108.7 8.2 70 213-282 1-73 (73)
49 cd03044 GST_N_EF1Bgamma GST_N 99.6 6.6E-16 1.4E-20 109.5 7.9 70 214-283 2-74 (75)
50 cd03051 GST_N_GTT2_like GST_N 99.6 8.2E-16 1.8E-20 108.5 7.6 70 213-282 1-74 (74)
51 cd03049 GST_N_3 GST_N family, 99.6 9.9E-16 2.1E-20 108.0 7.8 70 213-282 1-73 (73)
52 PLN02378 glutathione S-transfe 99.6 2.1E-15 4.6E-20 128.8 11.1 87 217-306 16-102 (213)
53 cd03047 GST_N_2 GST_N family, 99.6 1.6E-15 3.6E-20 106.9 8.2 70 213-282 1-73 (73)
54 KOG1422|consensus 99.6 2.7E-15 6E-20 122.2 10.4 157 29-205 20-191 (221)
55 PRK10387 glutaredoxin 2; Provi 99.6 1.7E-15 3.7E-20 129.0 9.6 92 213-309 1-93 (210)
56 cd03039 GST_N_Sigma_like GST_N 99.6 9.8E-16 2.1E-20 107.7 6.5 71 213-283 1-72 (72)
57 cd03057 GST_N_Beta GST_N famil 99.6 2.4E-15 5.2E-20 107.2 8.6 73 213-286 1-77 (77)
58 cd03046 GST_N_GTT1_like GST_N 99.6 2.7E-15 5.9E-20 106.5 8.8 73 213-286 1-76 (76)
59 cd03040 GST_N_mPGES2 GST_N fam 99.6 1.7E-15 3.8E-20 107.9 7.6 73 212-286 1-77 (77)
60 cd03037 GST_N_GRX2 GST_N famil 99.6 2.2E-15 4.9E-20 105.6 7.8 70 213-283 1-71 (71)
61 cd03042 GST_N_Zeta GST_N famil 99.6 2.9E-15 6.3E-20 105.5 8.1 70 213-282 1-73 (73)
62 TIGR00862 O-ClC intracellular 99.6 8.2E-15 1.8E-19 126.0 11.8 84 219-302 17-102 (236)
63 cd03075 GST_N_Mu GST_N family, 99.6 3.5E-15 7.5E-20 107.6 7.7 73 213-285 1-82 (82)
64 cd03077 GST_N_Alpha GST_N fami 99.6 5.3E-15 1.1E-19 105.9 8.5 72 212-286 1-77 (79)
65 PF02798 GST_N: Glutathione S- 99.6 6E-15 1.3E-19 104.8 7.9 70 214-283 2-76 (76)
66 TIGR02182 GRXB Glutaredoxin, G 99.6 1.1E-14 2.4E-19 124.0 10.6 91 214-309 1-92 (209)
67 PF13409 GST_N_2: Glutathione 99.6 7E-15 1.5E-19 102.7 7.1 65 220-284 1-70 (70)
68 PLN02817 glutathione dehydroge 99.6 1.9E-14 4.2E-19 126.3 11.5 85 219-306 71-155 (265)
69 cd03080 GST_N_Metaxin_like GST 99.6 2.1E-14 4.6E-19 101.7 8.4 67 213-286 2-75 (75)
70 KOG4420|consensus 99.6 2E-14 4.2E-19 120.4 9.3 160 22-184 27-255 (325)
71 cd03038 GST_N_etherase_LigE GS 99.5 2.6E-14 5.6E-19 103.6 8.0 67 219-286 14-84 (84)
72 cd03043 GST_N_1 GST_N family, 99.5 6.5E-14 1.4E-18 98.6 7.9 66 217-282 6-73 (73)
73 cd00570 GST_N_family Glutathio 99.5 1.6E-13 3.4E-18 95.1 8.1 70 213-282 1-71 (71)
74 PTZ00057 glutathione s-transfe 99.5 4.8E-13 1E-17 113.6 11.9 87 211-303 3-97 (205)
75 KOG1695|consensus 99.4 6.3E-13 1.4E-17 111.1 10.5 96 210-309 1-96 (206)
76 cd03054 GST_N_Metaxin GST_N fa 99.4 7.1E-13 1.5E-17 93.0 7.8 58 220-284 15-72 (72)
77 PF13417 GST_N_3: Glutathione 99.4 7.4E-13 1.6E-17 93.8 5.1 61 24-88 1-72 (75)
78 cd03055 GST_N_Omega GST_N fami 99.4 1.7E-12 3.7E-17 95.0 7.2 75 8-84 5-89 (89)
79 KOG4420|consensus 99.4 8.3E-13 1.8E-17 110.8 6.0 83 211-293 25-110 (325)
80 KOG3029|consensus 99.3 1.5E-11 3.3E-16 104.3 12.1 160 20-186 89-337 (370)
81 cd03058 GST_N_Tau GST_N family 99.3 3.8E-12 8.2E-17 89.8 6.0 64 22-87 1-74 (74)
82 cd03052 GST_N_GDAP1 GST_N fami 99.3 3E-12 6.4E-17 90.1 5.3 61 22-84 1-73 (73)
83 cd03059 GST_N_SspA GST_N famil 99.3 4.5E-12 9.8E-17 89.0 6.2 64 22-87 1-73 (73)
84 COG0435 ECM4 Predicted glutath 99.3 1.8E-12 4E-17 109.8 4.1 194 2-205 28-272 (324)
85 cd03041 GST_N_2GST_N GST_N fam 99.3 6E-12 1.3E-16 89.5 6.1 64 22-87 2-77 (77)
86 cd03184 GST_C_Omega GST_C fami 99.3 8.4E-12 1.8E-16 97.3 6.2 105 103-213 3-107 (124)
87 cd03045 GST_N_Delta_Epsilon GS 99.3 9E-12 1.9E-16 87.8 5.6 62 22-85 1-74 (74)
88 cd03080 GST_N_Metaxin_like GST 99.3 1.6E-11 3.6E-16 86.8 6.9 65 22-88 2-75 (75)
89 cd03050 GST_N_Theta GST_N fami 99.3 1.1E-11 2.4E-16 87.9 6.0 64 22-87 1-76 (76)
90 cd03053 GST_N_Phi GST_N family 99.2 1.4E-11 3.1E-16 87.2 6.2 64 21-86 1-76 (76)
91 cd03037 GST_N_GRX2 GST_N famil 99.2 1.4E-11 3E-16 86.1 5.7 60 22-85 1-71 (71)
92 cd03040 GST_N_mPGES2 GST_N fam 99.2 3.2E-11 7E-16 85.7 7.0 63 21-87 1-76 (77)
93 cd03061 GST_N_CLIC GST_N famil 99.2 1.4E-11 3E-16 89.6 5.1 60 27-88 19-87 (91)
94 KOG2903|consensus 99.2 8.5E-12 1.9E-16 104.8 3.8 198 2-205 18-273 (319)
95 COG2999 GrxB Glutaredoxin 2 [P 99.2 3.5E-11 7.5E-16 95.6 6.6 91 213-308 1-92 (215)
96 TIGR02190 GlrX-dom Glutaredoxi 99.2 1.1E-10 2.5E-15 83.3 8.1 75 208-282 5-79 (79)
97 cd03051 GST_N_GTT2_like GST_N 99.2 3.9E-11 8.5E-16 84.3 5.6 61 22-84 1-74 (74)
98 cd03039 GST_N_Sigma_like GST_N 99.2 5.6E-11 1.2E-15 83.3 6.1 62 22-85 1-72 (72)
99 cd03076 GST_N_Pi GST_N family, 99.2 5.9E-11 1.3E-15 83.5 6.2 64 21-86 1-73 (73)
100 cd03047 GST_N_2 GST_N family, 99.2 5.6E-11 1.2E-15 83.6 5.4 61 22-84 1-73 (73)
101 cd03060 GST_N_Omega_like GST_N 99.2 6.5E-11 1.4E-15 82.8 5.7 59 23-83 2-70 (71)
102 cd03079 GST_N_Metaxin2 GST_N f 99.1 1.7E-10 3.8E-15 80.5 7.3 59 220-284 16-74 (74)
103 cd03048 GST_N_Ure2p_like GST_N 99.1 9.4E-11 2E-15 84.1 5.9 64 22-88 2-80 (81)
104 cd03056 GST_N_4 GST_N family, 99.1 1E-10 2.3E-15 82.0 5.4 61 22-84 1-73 (73)
105 cd03077 GST_N_Alpha GST_N fami 99.1 1.7E-10 3.6E-15 82.4 6.5 62 21-88 1-77 (79)
106 cd03196 GST_C_5 GST_C family, 99.1 8.2E-11 1.8E-15 90.4 4.4 107 97-211 2-109 (115)
107 cd03042 GST_N_Zeta GST_N famil 99.1 1.7E-10 3.6E-15 80.9 5.3 61 22-84 1-73 (73)
108 cd03049 GST_N_3 GST_N family, 99.1 2.2E-10 4.8E-15 80.5 5.7 61 22-84 1-73 (73)
109 PF13409 GST_N_2: Glutathione 99.1 1.7E-10 3.7E-15 80.4 4.8 56 29-86 1-70 (70)
110 cd03046 GST_N_GTT1_like GST_N 99.1 3E-10 6.6E-15 80.3 5.9 64 22-88 1-76 (76)
111 cd03189 GST_C_GTT1_like GST_C 99.1 2.1E-10 4.6E-15 88.4 5.3 103 96-209 2-117 (119)
112 cd03038 GST_N_etherase_LigE GS 99.1 3.7E-10 8.1E-15 81.6 6.0 55 28-88 14-84 (84)
113 PLN02907 glutamate-tRNA ligase 99.0 1.1E-09 2.4E-14 108.1 10.8 84 213-310 3-87 (722)
114 cd03044 GST_N_EF1Bgamma GST_N 99.0 4.1E-10 8.9E-15 79.6 5.7 61 23-85 2-74 (75)
115 cd03057 GST_N_Beta GST_N famil 99.0 4.3E-10 9.3E-15 79.8 5.7 64 22-88 1-77 (77)
116 cd03190 GST_C_ECM4_like GST_C 99.0 1.7E-10 3.7E-15 92.1 3.9 107 101-212 3-111 (142)
117 cd03185 GST_C_Tau GST_C family 99.0 2.4E-10 5.2E-15 89.1 4.0 106 103-214 4-110 (126)
118 cd03191 GST_C_Zeta GST_C famil 99.0 2.7E-10 5.8E-15 88.2 4.2 100 103-210 4-110 (121)
119 cd03054 GST_N_Metaxin GST_N fa 99.0 1E-09 2.2E-14 76.8 6.5 59 22-86 1-72 (72)
120 KOG1422|consensus 99.0 4.5E-09 9.8E-14 86.1 10.9 70 219-288 19-88 (221)
121 PRK10638 glutaredoxin 3; Provi 99.0 1.8E-09 3.8E-14 77.9 7.8 72 211-282 2-74 (83)
122 cd03200 GST_C_JTV1 GST_C famil 99.0 6.8E-10 1.5E-14 82.4 5.2 93 80-207 1-93 (96)
123 cd03029 GRX_hybridPRX5 Glutare 99.0 2.7E-09 5.9E-14 74.7 8.0 71 212-282 2-72 (72)
124 cd03186 GST_C_SspA GST_N famil 99.0 2.8E-10 6.1E-15 86.1 3.2 96 103-210 4-100 (107)
125 cd03075 GST_N_Mu GST_N family, 99.0 1.1E-09 2.3E-14 78.8 5.6 61 23-87 2-82 (82)
126 cd03188 GST_C_Beta GST_C famil 99.0 1.7E-10 3.8E-15 88.0 1.2 98 103-210 3-107 (114)
127 cd03177 GST_C_Delta_Epsilon GS 99.0 1E-09 2.3E-14 84.6 5.4 99 103-211 3-104 (118)
128 cd03180 GST_C_2 GST_C family, 98.9 1.2E-09 2.7E-14 82.7 5.4 98 103-210 3-107 (110)
129 cd03182 GST_C_GTT2_like GST_C 98.9 1.2E-09 2.5E-14 84.0 4.2 101 99-210 2-114 (117)
130 KOG4244|consensus 98.9 2.6E-09 5.6E-14 90.6 6.3 179 17-206 41-269 (281)
131 COG2999 GrxB Glutaredoxin 2 [P 98.9 4.8E-09 1E-13 83.6 6.1 179 22-218 1-212 (215)
132 cd03043 GST_N_1 GST_N family, 98.9 4.3E-09 9.3E-14 73.9 5.1 57 26-84 6-73 (73)
133 cd03179 GST_C_1 GST_C family, 98.8 2.2E-09 4.8E-14 80.7 3.8 95 103-207 3-104 (105)
134 cd03198 GST_C_CLIC GST_C famil 98.8 2.3E-09 4.9E-14 84.0 3.7 91 119-211 10-116 (134)
135 cd00570 GST_N_family Glutathio 98.8 8E-09 1.7E-13 71.0 5.5 59 22-84 1-71 (71)
136 cd03192 GST_C_Sigma_like GST_C 98.8 3E-09 6.5E-14 80.0 3.4 97 103-206 3-103 (104)
137 PF00043 GST_C: Glutathione S- 98.8 2.2E-09 4.8E-14 79.2 2.2 62 137-207 29-91 (95)
138 cd03206 GST_C_7 GST_C family, 98.8 2.4E-09 5.2E-14 80.0 1.9 65 136-210 33-97 (100)
139 cd03178 GST_C_Ure2p_like GST_C 98.8 2.9E-09 6.4E-14 81.2 2.4 99 103-210 2-105 (113)
140 cd03210 GST_C_Pi GST_C family, 98.8 2.2E-09 4.8E-14 83.8 1.7 71 137-214 36-107 (126)
141 PF13410 GST_C_2: Glutathione 98.8 2.9E-09 6.4E-14 73.8 1.9 62 137-205 7-68 (69)
142 cd03203 GST_C_Lambda GST_C fam 98.8 7.8E-09 1.7E-13 80.0 4.4 101 98-211 1-103 (120)
143 cd03027 GRX_DEP Glutaredoxin ( 98.8 3.3E-08 7.2E-13 69.3 7.2 68 212-279 2-70 (73)
144 cd03201 GST_C_DHAR GST_C famil 98.7 6.5E-09 1.4E-13 80.5 3.5 90 119-212 13-103 (121)
145 cd03187 GST_C_Phi GST_C family 98.7 1E-08 2.2E-13 78.7 4.0 100 103-210 3-111 (118)
146 cd03208 GST_C_Alpha GST_C fami 98.7 6.4E-09 1.4E-13 82.4 2.5 72 139-217 42-113 (137)
147 PF14497 GST_C_3: Glutathione 98.7 9.8E-09 2.1E-13 76.5 3.3 61 137-206 36-96 (99)
148 KOG3029|consensus 98.7 3.3E-08 7.1E-13 84.4 6.5 71 211-283 89-159 (370)
149 cd03181 GST_C_EFB1gamma GST_C 98.7 2.5E-08 5.4E-13 77.2 5.3 102 103-211 2-108 (123)
150 PF02798 GST_N: Glutathione S- 98.7 3.4E-08 7.4E-13 69.9 5.3 61 21-85 2-76 (76)
151 cd03195 GST_C_4 GST_C family, 98.7 2.3E-08 5E-13 76.6 4.8 95 103-209 4-103 (114)
152 cd03204 GST_C_GDAP1 GST_C fami 98.7 1.5E-08 3.2E-13 76.9 3.3 71 137-210 30-108 (111)
153 PRK10329 glutaredoxin-like pro 98.7 6.6E-08 1.4E-12 69.2 6.5 62 211-272 1-62 (81)
154 cd00299 GST_C_family Glutathio 98.7 2.7E-08 5.9E-13 73.6 4.4 63 137-206 37-99 (100)
155 cd03183 GST_C_Theta GST_C fami 98.7 1.8E-08 3.8E-13 78.5 3.4 64 137-209 46-110 (126)
156 TIGR02196 GlrX_YruB Glutaredox 98.7 1.1E-07 2.4E-12 66.3 7.1 70 212-281 1-73 (74)
157 cd02066 GRX_family Glutaredoxi 98.6 1.1E-07 2.4E-12 65.8 7.0 69 212-280 1-70 (72)
158 cd03209 GST_C_Mu GST_C family, 98.6 9.3E-09 2E-13 79.6 1.5 68 137-213 36-103 (121)
159 cd03079 GST_N_Metaxin2 GST_N f 98.6 8.3E-08 1.8E-12 67.0 5.8 63 19-86 8-74 (74)
160 cd03193 GST_C_Metaxin GST_C fa 98.6 2E-08 4.3E-13 73.1 2.2 68 136-206 19-86 (88)
161 COG0695 GrxC Glutaredoxin and 98.6 2.5E-07 5.5E-12 66.0 7.6 70 212-281 2-74 (80)
162 cd03207 GST_C_8 GST_C family, 98.6 2.2E-08 4.7E-13 75.1 1.8 65 136-211 30-94 (103)
163 cd03418 GRX_GRXb_1_3_like Glut 98.6 2.8E-07 6E-12 64.8 7.3 71 212-282 1-73 (75)
164 PRK11200 grxA glutaredoxin 1; 98.6 3.9E-07 8.5E-12 65.9 7.9 76 211-286 1-84 (85)
165 cd02976 NrdH NrdH-redoxin (Nrd 98.5 2.2E-07 4.7E-12 64.6 6.3 62 212-273 1-63 (73)
166 cd03194 GST_C_3 GST_C family, 98.5 1E-07 2.2E-12 73.0 4.1 64 137-211 42-106 (114)
167 cd03202 GST_C_etherase_LigE GS 98.5 6.6E-08 1.4E-12 75.2 2.9 64 136-207 58-121 (124)
168 cd03078 GST_N_Metaxin1_like GS 98.5 4.4E-07 9.6E-12 63.5 6.5 59 219-284 14-72 (73)
169 TIGR02181 GRX_bact Glutaredoxi 98.5 5.7E-07 1.2E-11 64.0 7.2 71 213-283 1-72 (79)
170 TIGR02200 GlrX_actino Glutared 98.5 4E-07 8.6E-12 64.2 5.6 70 212-281 1-75 (77)
171 TIGR02183 GRXA Glutaredoxin, G 98.4 1.2E-06 2.6E-11 63.5 7.9 74 213-286 2-83 (86)
172 TIGR02194 GlrX_NrdH Glutaredox 98.4 7.1E-07 1.5E-11 62.3 5.8 57 213-269 1-57 (72)
173 TIGR02190 GlrX-dom Glutaredoxi 98.4 2E-06 4.3E-11 61.3 7.3 63 18-84 6-79 (79)
174 PF00462 Glutaredoxin: Glutare 98.4 5.7E-07 1.2E-11 60.4 4.2 59 213-271 1-60 (60)
175 PHA03050 glutaredoxin; Provisi 98.4 1.2E-06 2.6E-11 66.2 6.3 72 208-279 10-88 (108)
176 TIGR02189 GlrX-like_plant Glut 98.3 3.9E-06 8.5E-11 62.4 8.9 73 209-281 6-82 (99)
177 cd03197 GST_C_mPGES2 GST_C fam 98.3 4.1E-07 8.9E-12 72.0 3.2 64 136-207 79-143 (149)
178 cd03419 GRX_GRXh_1_2_like Glut 98.3 5.8E-06 1.3E-10 59.0 8.4 72 212-283 1-76 (82)
179 cd03205 GST_C_6 GST_C family, 98.2 2.4E-06 5.3E-11 63.4 5.3 60 137-206 38-97 (98)
180 TIGR00365 monothiol glutaredox 98.2 9.7E-06 2.1E-10 60.1 7.6 73 210-282 11-89 (97)
181 cd03028 GRX_PICOT_like Glutare 98.1 1.5E-05 3.2E-10 58.2 7.7 72 210-281 7-84 (90)
182 cd03029 GRX_hybridPRX5 Glutare 98.1 1.2E-05 2.6E-10 56.0 6.5 60 21-84 2-72 (72)
183 TIGR02180 GRX_euk Glutaredoxin 98.1 2.9E-05 6.2E-10 55.6 8.5 71 213-283 1-77 (84)
184 cd03211 GST_C_Metaxin2 GST_C f 98.0 2.7E-06 5.8E-11 66.3 2.5 69 136-207 57-125 (126)
185 KOG4244|consensus 97.9 5.5E-05 1.2E-09 64.7 8.8 88 211-308 44-138 (281)
186 PRK10638 glutaredoxin 3; Provi 97.9 4.4E-05 9.6E-10 54.8 6.0 58 21-82 3-72 (83)
187 cd03212 GST_C_Metaxin1_3 GST_C 97.8 9E-06 2E-10 64.3 2.5 68 137-207 65-132 (137)
188 PRK10824 glutaredoxin-4; Provi 97.8 0.00014 3E-09 55.4 7.6 73 210-282 14-92 (115)
189 TIGR02200 GlrX_actino Glutared 97.7 0.00011 2.3E-09 51.5 6.3 60 21-84 1-76 (77)
190 cd03078 GST_N_Metaxin1_like GS 97.7 9.4E-05 2E-09 51.7 5.4 57 28-86 14-72 (73)
191 cd03031 GRX_GRX_like Glutaredo 97.6 0.00027 5.8E-09 56.3 7.4 70 212-281 1-81 (147)
192 PRK12759 bifunctional gluaredo 97.6 0.00022 4.7E-09 66.8 8.0 70 210-279 1-79 (410)
193 cd03027 GRX_DEP Glutaredoxin ( 97.6 0.0001 2.2E-09 51.4 4.4 31 20-50 1-31 (73)
194 KOG3027|consensus 97.6 0.0011 2.5E-08 54.6 10.7 153 19-182 26-221 (257)
195 PRK11200 grxA glutaredoxin 1; 97.5 0.00036 7.7E-09 50.2 6.9 64 21-88 2-84 (85)
196 cd02066 GRX_family Glutaredoxi 97.5 0.00036 7.7E-09 47.8 5.8 56 21-80 1-68 (72)
197 cd02976 NrdH NrdH-redoxin (Nrd 97.5 0.00033 7.1E-09 48.2 5.6 30 21-50 1-30 (73)
198 PRK10329 glutaredoxin-like pro 97.4 0.00022 4.7E-09 50.9 4.5 30 21-50 2-31 (81)
199 cd03418 GRX_GRXb_1_3_like Glut 97.4 0.00074 1.6E-08 47.1 6.9 58 21-82 1-71 (75)
200 TIGR02196 GlrX_YruB Glutaredox 97.4 0.00053 1.1E-08 47.2 5.9 30 21-50 1-30 (74)
201 TIGR02194 GlrX_NrdH Glutaredox 97.3 0.0004 8.7E-09 48.3 4.2 29 22-50 1-29 (72)
202 KOG1752|consensus 97.3 0.0029 6.3E-08 47.2 8.9 74 209-282 12-89 (104)
203 PTZ00062 glutaredoxin; Provisi 97.2 0.0015 3.2E-08 55.1 7.5 72 210-281 112-189 (204)
204 TIGR02189 GlrX-like_plant Glut 97.2 0.00059 1.3E-08 50.7 4.6 34 17-50 5-38 (99)
205 PF00462 Glutaredoxin: Glutare 97.1 0.00074 1.6E-08 45.0 3.9 29 22-50 1-29 (60)
206 PF10568 Tom37: Outer mitochon 97.0 0.0033 7.1E-08 43.7 6.8 55 220-281 13-71 (72)
207 TIGR02183 GRXA Glutaredoxin, G 97.0 0.0022 4.7E-08 46.3 6.1 63 22-88 2-83 (86)
208 TIGR02181 GRX_bact Glutaredoxi 96.9 0.0015 3.4E-08 46.1 4.0 57 22-82 1-69 (79)
209 PHA03050 glutaredoxin; Provisi 96.8 0.0022 4.7E-08 48.4 4.6 34 17-50 10-46 (108)
210 cd03030 GRX_SH3BGR Glutaredoxi 96.7 0.0076 1.7E-07 44.0 7.0 68 213-280 2-80 (92)
211 cd02973 TRX_GRX_like Thioredox 96.7 0.0047 1E-07 42.0 5.6 58 212-272 2-64 (67)
212 cd03419 GRX_GRXh_1_2_like Glut 96.7 0.0067 1.4E-07 42.9 6.6 61 21-85 1-76 (82)
213 COG0695 GrxC Glutaredoxin and 96.6 0.0033 7.2E-08 44.7 4.3 30 21-50 2-31 (80)
214 TIGR00365 monothiol glutaredox 96.6 0.0033 7.3E-08 46.4 4.4 34 17-50 9-47 (97)
215 PF14834 GST_C_4: Glutathione 96.6 0.0072 1.6E-07 45.4 6.0 79 103-183 5-88 (117)
216 cd03036 ArsC_like Arsenate Red 96.6 0.0031 6.7E-08 47.9 4.2 29 22-50 1-29 (111)
217 COG4545 Glutaredoxin-related p 96.5 0.011 2.3E-07 40.6 5.6 63 210-272 1-77 (85)
218 cd02977 ArsC_family Arsenate R 96.4 0.0045 9.6E-08 46.4 4.0 29 22-50 1-29 (105)
219 cd03036 ArsC_like Arsenate Red 96.4 0.003 6.5E-08 47.9 3.0 34 213-246 1-34 (111)
220 cd03028 GRX_PICOT_like Glutare 96.1 0.01 2.2E-07 43.1 4.5 34 17-50 5-43 (90)
221 PRK01655 spxA transcriptional 96.1 0.0084 1.8E-07 46.9 4.2 29 22-50 2-30 (131)
222 cd02977 ArsC_family Arsenate R 96.0 0.014 3.1E-07 43.6 5.0 34 213-246 1-34 (105)
223 cd03032 ArsC_Spx Arsenate Redu 96.0 0.011 2.4E-07 45.1 4.3 29 22-50 2-30 (115)
224 TIGR02180 GRX_euk Glutaredoxin 95.9 0.021 4.6E-07 40.4 5.3 29 22-50 1-31 (84)
225 TIGR01617 arsC_related transcr 95.9 0.012 2.7E-07 45.0 4.2 29 22-50 1-29 (117)
226 PRK01655 spxA transcriptional 95.8 0.017 3.6E-07 45.2 4.8 34 213-246 2-35 (131)
227 cd03032 ArsC_Spx Arsenate Redu 95.5 0.026 5.7E-07 43.0 4.9 34 213-246 2-35 (115)
228 KOG3028|consensus 95.4 0.48 1E-05 42.0 12.7 150 29-183 16-208 (313)
229 TIGR00412 redox_disulf_2 small 95.4 0.092 2E-06 36.7 6.8 56 212-272 2-61 (76)
230 PRK12559 transcriptional regul 95.3 0.028 6.1E-07 44.0 4.3 29 22-50 2-30 (131)
231 cd03035 ArsC_Yffb Arsenate Red 95.3 0.028 6E-07 42.1 4.1 29 22-50 1-29 (105)
232 TIGR01617 arsC_related transcr 95.3 0.025 5.4E-07 43.3 3.9 34 213-246 1-34 (117)
233 PRK13344 spxA transcriptional 95.3 0.041 8.9E-07 43.1 5.2 34 213-246 2-35 (132)
234 PRK12559 transcriptional regul 95.2 0.039 8.5E-07 43.1 5.1 34 213-246 2-35 (131)
235 PRK10824 glutaredoxin-4; Provi 95.2 0.03 6.6E-07 42.6 4.3 34 17-50 12-50 (115)
236 cd03033 ArsC_15kD Arsenate Red 95.0 0.037 7.9E-07 42.1 4.1 29 22-50 2-30 (113)
237 cd03035 ArsC_Yffb Arsenate Red 95.0 0.054 1.2E-06 40.6 4.9 34 213-246 1-34 (105)
238 PRK13344 spxA transcriptional 94.9 0.039 8.6E-07 43.2 4.3 29 22-50 2-30 (132)
239 TIGR00411 redox_disulf_1 small 94.8 0.11 2.4E-06 36.3 6.1 57 212-269 2-62 (82)
240 PRK10026 arsenate reductase; P 94.8 0.044 9.5E-07 43.3 4.1 35 210-244 1-35 (141)
241 cd03033 ArsC_15kD Arsenate Red 94.6 0.072 1.6E-06 40.5 4.9 34 213-246 2-35 (113)
242 COG1393 ArsC Arsenate reductas 94.6 0.083 1.8E-06 40.4 5.2 35 212-246 2-36 (117)
243 PF05768 DUF836: Glutaredoxin- 94.6 0.14 3E-06 36.3 6.0 55 212-268 1-57 (81)
244 PRK12759 bifunctional gluaredo 94.5 0.049 1.1E-06 51.2 4.6 30 21-50 3-32 (410)
245 cd01659 TRX_superfamily Thiore 94.2 0.14 3.1E-06 32.8 5.1 53 213-265 1-58 (69)
246 PF11287 DUF3088: Protein of u 94.1 0.19 4.2E-06 37.5 6.1 69 220-288 23-110 (112)
247 KOG3027|consensus 94.1 0.3 6.6E-06 40.6 7.8 80 222-310 35-115 (257)
248 TIGR01616 nitro_assoc nitrogen 93.8 0.15 3.3E-06 39.5 5.2 35 212-246 2-36 (126)
249 KOG2903|consensus 93.8 0.26 5.6E-06 42.5 6.9 96 211-309 36-181 (319)
250 TIGR01616 nitro_assoc nitrogen 93.7 0.11 2.4E-06 40.3 4.3 30 21-50 2-31 (126)
251 COG4545 Glutaredoxin-related p 93.5 0.18 3.9E-06 34.7 4.5 31 21-51 3-33 (85)
252 cd03026 AhpF_NTD_C TRX-GRX-lik 93.3 0.3 6.6E-06 35.3 5.8 62 208-272 11-77 (89)
253 COG0278 Glutaredoxin-related p 93.1 0.37 8E-06 35.3 5.8 72 211-282 15-93 (105)
254 PRK10853 putative reductase; P 93.0 0.15 3.2E-06 39.1 4.0 34 213-246 2-35 (118)
255 PRK10026 arsenate reductase; P 93.0 0.15 3.4E-06 40.2 4.1 30 21-50 3-32 (141)
256 PHA02125 thioredoxin-like prot 92.9 0.31 6.7E-06 33.8 5.3 50 213-265 2-51 (75)
257 PF10568 Tom37: Outer mitochon 92.9 0.51 1.1E-05 32.6 6.2 49 29-83 13-71 (72)
258 cd03031 GRX_GRX_like Glutaredo 92.4 0.56 1.2E-05 37.4 6.7 30 21-50 1-36 (147)
259 PRK10853 putative reductase; P 92.2 0.22 4.8E-06 38.1 4.0 29 22-50 2-30 (118)
260 TIGR00014 arsC arsenate reduct 92.0 0.25 5.4E-06 37.6 4.1 29 22-50 1-29 (114)
261 TIGR00014 arsC arsenate reduct 91.9 0.22 4.8E-06 37.8 3.8 34 213-246 1-34 (114)
262 cd03034 ArsC_ArsC Arsenate Red 91.9 0.23 5E-06 37.6 3.8 34 213-246 1-34 (112)
263 KOG1147|consensus 91.9 0.3 6.6E-06 46.4 5.2 85 69-178 43-128 (712)
264 PTZ00062 glutaredoxin; Provisi 91.8 0.25 5.5E-06 41.6 4.3 34 17-50 110-148 (204)
265 COG1393 ArsC Arsenate reductas 91.6 0.3 6.6E-06 37.3 4.2 30 21-50 2-31 (117)
266 cd03034 ArsC_ArsC Arsenate Red 91.6 0.3 6.4E-06 37.0 4.1 29 22-50 1-29 (112)
267 cd03199 GST_C_GRX2 GST_C famil 91.4 0.099 2.2E-06 40.5 1.3 69 136-216 60-128 (128)
268 PF13192 Thioredoxin_3: Thiore 91.3 0.71 1.5E-05 32.1 5.6 57 212-273 2-62 (76)
269 cd02973 TRX_GRX_like Thioredox 90.7 0.27 5.9E-06 33.0 2.9 30 21-50 2-36 (67)
270 COG0435 ECM4 Predicted glutath 90.6 1.4 3E-05 38.6 7.6 98 210-309 49-183 (324)
271 PF04399 Glutaredoxin2_C: Glut 90.5 0.065 1.4E-06 41.8 -0.5 70 137-218 60-129 (132)
272 KOG1752|consensus 90.2 0.52 1.1E-05 35.2 4.2 34 17-50 11-44 (104)
273 PF04908 SH3BGR: SH3-binding, 90.2 1.2 2.5E-05 33.0 6.0 70 212-281 2-87 (99)
274 PF00085 Thioredoxin: Thioredo 83.9 13 0.00029 26.5 9.0 73 210-283 18-102 (103)
275 PF03960 ArsC: ArsC family; I 81.8 1.6 3.5E-05 32.8 3.1 31 216-246 1-31 (110)
276 TIGR01295 PedC_BrcD bacterioci 80.3 7 0.00015 29.9 6.3 59 212-270 26-102 (122)
277 KOG3028|consensus 80.2 15 0.00033 32.8 8.9 81 220-310 16-100 (313)
278 TIGR00412 redox_disulf_2 small 80.0 3.1 6.7E-05 28.8 3.8 29 21-50 2-34 (76)
279 PF03960 ArsC: ArsC family; I 79.6 2.4 5.3E-05 31.7 3.4 26 25-50 1-26 (110)
280 cd02975 PfPDO_like_N Pyrococcu 77.7 6.2 0.00013 29.7 5.2 53 212-265 24-80 (113)
281 cd02949 TRX_NTR TRX domain, no 77.2 11 0.00025 27.1 6.4 59 211-270 15-79 (97)
282 cd02947 TRX_family TRX family; 77.2 12 0.00027 25.6 6.5 55 212-269 13-74 (93)
283 KOG0911|consensus 76.6 6.6 0.00014 33.3 5.4 74 208-281 136-215 (227)
284 PF09635 MetRS-N: MetRS-N bind 76.0 1.8 3.8E-05 33.1 1.7 31 256-286 31-63 (122)
285 cd02989 Phd_like_TxnDC9 Phosdu 75.9 14 0.0003 27.7 6.7 62 210-272 23-89 (113)
286 PRK15317 alkyl hydroperoxide r 73.4 2 4.4E-05 41.6 1.9 87 192-283 103-196 (517)
287 TIGR03140 AhpF alkyl hydropero 73.1 1.8 3.9E-05 42.1 1.4 87 192-283 104-197 (515)
288 PHA02278 thioredoxin-like prot 72.5 23 0.0005 26.1 7.0 62 210-271 15-85 (103)
289 cd01659 TRX_superfamily Thiore 71.8 5.9 0.00013 24.7 3.4 29 22-50 1-34 (69)
290 cd02953 DsbDgamma DsbD gamma f 71.6 12 0.00025 27.3 5.3 54 211-265 13-77 (104)
291 TIGR03143 AhpF_homolog putativ 71.2 6.3 0.00014 38.6 4.8 74 192-272 463-541 (555)
292 PHA02125 thioredoxin-like prot 70.4 4.6 0.0001 27.8 2.7 27 22-50 2-28 (75)
293 PF11801 Tom37_C: Tom37 C-term 70.4 8.7 0.00019 31.3 4.6 40 141-180 113-154 (168)
294 cd02984 TRX_PICOT TRX domain, 69.1 24 0.00052 25.0 6.4 59 211-270 16-80 (97)
295 TIGR00411 redox_disulf_1 small 67.7 8.2 0.00018 26.5 3.6 22 21-42 2-23 (82)
296 KOG2824|consensus 67.5 16 0.00035 32.1 5.8 74 207-280 127-211 (281)
297 cd02963 TRX_DnaJ TRX domain, D 67.5 24 0.00052 26.2 6.3 60 210-270 25-91 (111)
298 COG3011 Predicted thiol-disulf 66.6 36 0.00077 26.7 7.0 78 208-285 5-87 (137)
299 PHA03075 glutaredoxin-like pro 66.3 9.1 0.0002 28.9 3.5 38 19-60 2-39 (123)
300 KOG3425|consensus 65.9 21 0.00046 27.3 5.4 67 218-284 42-122 (128)
301 COG3019 Predicted metal-bindin 65.6 9.2 0.0002 29.9 3.6 73 210-285 25-104 (149)
302 TIGR02187 GlrX_arch Glutaredox 65.5 27 0.00058 29.5 6.9 55 210-265 134-191 (215)
303 cd02951 SoxW SoxW family; SoxW 62.2 26 0.00056 26.5 5.7 55 211-265 16-89 (125)
304 COG0278 Glutaredoxin-related p 61.0 17 0.00036 26.8 4.0 34 17-50 12-51 (105)
305 PTZ00051 thioredoxin; Provisio 60.9 37 0.0008 24.1 6.1 59 211-270 20-83 (98)
306 TIGR01068 thioredoxin thioredo 60.5 26 0.00055 24.8 5.2 58 211-269 16-79 (101)
307 PRK09381 trxA thioredoxin; Pro 60.4 63 0.0014 23.5 8.5 59 211-270 23-87 (109)
308 cd02956 ybbN ybbN protein fami 60.0 20 0.00043 25.5 4.5 59 211-270 14-78 (96)
309 cd03030 GRX_SH3BGR Glutaredoxi 58.9 20 0.00043 26.0 4.2 29 22-50 2-36 (92)
310 TIGR02187 GlrX_arch Glutaredox 57.7 30 0.00065 29.2 5.8 60 209-269 19-88 (215)
311 PF14595 Thioredoxin_9: Thiore 57.4 5.3 0.00011 31.0 1.0 55 210-265 42-102 (129)
312 cd02948 TRX_NDPK TRX domain, T 56.7 63 0.0014 23.4 6.8 59 210-270 18-83 (102)
313 cd03026 AhpF_NTD_C TRX-GRX-lik 56.5 13 0.00027 26.7 2.9 31 20-50 14-49 (89)
314 cd02985 TRX_CDSP32 TRX family, 56.2 50 0.0011 24.0 6.2 61 210-270 16-83 (103)
315 cd02957 Phd_like Phosducin (Ph 56.0 49 0.0011 24.5 6.2 59 211-271 26-89 (113)
316 PF05768 DUF836: Glutaredoxin- 55.9 17 0.00038 25.4 3.4 24 21-44 1-24 (81)
317 PF04908 SH3BGR: SH3-binding, 55.6 23 0.00049 26.1 4.1 30 21-50 2-37 (99)
318 cd02954 DIM1 Dim1 family; Dim1 55.4 28 0.00061 26.4 4.7 58 212-270 17-80 (114)
319 COG3118 Thioredoxin domain-con 53.1 80 0.0017 28.3 7.7 77 210-287 44-132 (304)
320 cd02993 PDI_a_APS_reductase PD 53.1 57 0.0012 23.9 6.1 56 210-265 22-83 (109)
321 PF09635 MetRS-N: MetRS-N bind 52.4 16 0.00035 27.9 2.9 21 68-88 42-63 (122)
322 PTZ00443 Thioredoxin domain-co 52.1 88 0.0019 26.8 7.7 75 211-286 54-140 (224)
323 cd02959 ERp19 Endoplasmic reti 51.7 60 0.0013 24.4 6.1 61 211-272 21-91 (117)
324 cd03003 PDI_a_ERdj5_N PDIa fam 51.3 60 0.0013 23.3 5.9 58 211-269 20-83 (101)
325 cd02952 TRP14_like Human TRX-r 51.0 52 0.0011 25.1 5.6 63 211-273 23-105 (119)
326 PRK10996 thioredoxin 2; Provis 49.5 85 0.0019 24.4 6.8 59 211-270 54-118 (139)
327 COG3019 Predicted metal-bindin 49.0 24 0.00051 27.7 3.3 72 12-87 17-104 (149)
328 PF04134 DUF393: Protein of un 47.4 69 0.0015 23.7 5.8 69 215-284 1-77 (114)
329 cd03020 DsbA_DsbC_DsbG DsbA fa 46.7 30 0.00064 28.7 4.0 25 18-42 77-101 (197)
330 PF01323 DSBA: DSBA-like thior 44.9 23 0.0005 28.8 3.1 36 212-247 1-41 (193)
331 cd02950 TxlA TRX-like protein 44.6 92 0.002 24.3 6.3 60 211-270 22-89 (142)
332 cd02999 PDI_a_ERp44_like PDIa 44.0 87 0.0019 22.7 5.8 56 210-265 19-77 (100)
333 PF13462 Thioredoxin_4: Thiore 43.6 26 0.00056 27.6 3.1 25 17-41 11-35 (162)
334 cd02972 DsbA_family DsbA famil 43.2 33 0.00071 23.8 3.3 22 22-43 1-22 (98)
335 PF13098 Thioredoxin_2: Thiore 43.2 24 0.00053 25.8 2.7 23 19-41 6-28 (112)
336 cd02962 TMX2 TMX2 family; comp 42.3 46 0.001 26.6 4.3 60 212-272 50-122 (152)
337 cd02997 PDI_a_PDIR PDIa family 42.2 1.1E+02 0.0025 21.6 6.2 59 211-269 19-86 (104)
338 cd02994 PDI_a_TMX PDIa family, 42.0 84 0.0018 22.4 5.4 53 212-265 19-76 (101)
339 cd02961 PDI_a_family Protein D 41.8 1E+02 0.0023 21.2 5.9 54 211-265 17-76 (101)
340 PRK10877 protein disulfide iso 41.4 32 0.0007 29.6 3.5 26 17-42 106-131 (232)
341 TIGR02681 phage_pRha phage reg 41.1 26 0.00056 26.3 2.5 26 261-286 2-28 (108)
342 PRK11657 dsbG disulfide isomer 40.9 32 0.00069 30.0 3.4 24 18-41 117-140 (251)
343 PF06110 DUF953: Eukaryotic pr 40.8 24 0.00053 27.0 2.3 58 218-275 35-106 (119)
344 cd03002 PDI_a_MPD1_like PDI fa 39.9 1.2E+02 0.0026 21.8 6.1 58 212-269 21-85 (109)
345 cd03020 DsbA_DsbC_DsbG DsbA fa 39.6 51 0.0011 27.3 4.4 37 209-245 77-115 (197)
346 TIGR01295 PedC_BrcD bacterioci 39.0 37 0.00079 25.9 3.1 23 21-43 26-48 (122)
347 cd02987 Phd_like_Phd Phosducin 38.1 1.4E+02 0.0031 24.3 6.7 59 212-272 86-149 (175)
348 cd02955 SSP411 TRX domain, SSP 38.0 1.1E+02 0.0024 23.4 5.7 62 213-274 19-97 (124)
349 cd03004 PDI_a_ERdj5_C PDIa fam 37.9 45 0.00097 24.0 3.4 57 211-268 21-83 (104)
350 cd03021 DsbA_GSTK DsbA family, 37.6 38 0.00083 28.4 3.3 35 212-246 2-40 (209)
351 TIGR01126 pdi_dom protein disu 37.5 42 0.0009 23.8 3.2 55 210-265 14-74 (102)
352 PRK10877 protein disulfide iso 36.4 58 0.0013 28.0 4.3 26 209-234 107-132 (232)
353 cd03006 PDI_a_EFP1_N PDIa fami 36.2 64 0.0014 24.2 4.1 58 211-269 31-95 (113)
354 KOG2501|consensus 34.5 70 0.0015 25.7 4.1 57 218-274 42-132 (157)
355 KOG0907|consensus 34.5 68 0.0015 23.9 3.9 56 214-270 26-86 (106)
356 cd03023 DsbA_Com1_like DsbA fa 34.3 43 0.00092 25.9 3.0 25 18-42 5-29 (154)
357 cd02996 PDI_a_ERp44 PDIa famil 34.0 60 0.0013 23.6 3.6 57 212-269 21-89 (108)
358 PRK11657 dsbG disulfide isomer 33.8 53 0.0011 28.6 3.7 34 210-243 118-155 (251)
359 cd02965 HyaE HyaE family; HyaE 32.9 88 0.0019 23.6 4.2 65 208-273 26-98 (111)
360 PF13728 TraF: F plasmid trans 32.8 1.3E+02 0.0028 25.5 5.8 56 210-265 121-188 (215)
361 KOG0190|consensus 32.5 1.6E+02 0.0035 28.4 6.9 76 212-288 45-135 (493)
362 cd02998 PDI_a_ERp38 PDIa famil 32.4 56 0.0012 23.3 3.1 55 211-265 20-80 (105)
363 PTZ00102 disulphide isomerase; 32.3 2.7E+02 0.0059 26.3 8.7 77 211-288 51-141 (477)
364 cd03005 PDI_a_ERp46 PDIa famil 31.6 60 0.0013 23.1 3.2 57 212-269 19-84 (102)
365 PRK09266 hypothetical protein; 29.7 85 0.0018 27.4 4.4 58 230-287 200-260 (266)
366 TIGR01130 ER_PDI_fam protein d 29.4 3.2E+02 0.007 25.5 8.6 76 211-287 20-111 (462)
367 cd03022 DsbA_HCCA_Iso DsbA fam 27.2 72 0.0016 25.8 3.3 33 213-245 1-37 (192)
368 cd03000 PDI_a_TMX3 PDIa family 26.7 2E+02 0.0044 20.6 5.4 55 210-265 16-77 (104)
369 cd03024 DsbA_FrnE DsbA family, 26.4 73 0.0016 26.1 3.2 19 22-40 1-19 (201)
370 KOG0911|consensus 26.0 1.4E+02 0.003 25.5 4.7 33 18-50 137-174 (227)
371 COG2761 FrnE Predicted dithiol 25.5 1.1E+02 0.0023 26.3 3.9 30 209-238 4-37 (225)
372 KOG0910|consensus 24.9 2.2E+02 0.0047 22.8 5.3 61 210-271 62-128 (150)
373 COG5515 Uncharacterized conser 24.8 73 0.0016 21.1 2.2 22 21-42 2-27 (70)
374 cd02995 PDI_a_PDI_a'_C PDIa fa 24.5 2.1E+02 0.0045 20.1 5.1 53 211-265 20-78 (104)
375 PHA03075 glutaredoxin-like pro 24.3 1.2E+02 0.0026 23.1 3.6 35 212-246 4-38 (123)
376 cd03019 DsbA_DsbA DsbA family, 24.2 81 0.0017 25.2 3.0 25 17-41 14-38 (178)
377 cd03001 PDI_a_P5 PDIa family, 23.9 2.6E+02 0.0057 19.6 5.6 53 212-265 21-77 (103)
378 PF01323 DSBA: DSBA-like thior 23.5 82 0.0018 25.5 3.0 35 21-59 1-40 (193)
379 cd03024 DsbA_FrnE DsbA family, 23.0 86 0.0019 25.7 3.0 34 213-246 1-42 (201)
380 cd03025 DsbA_FrnE_like DsbA fa 20.9 1.3E+02 0.0028 24.4 3.7 34 212-245 2-41 (193)
No 1
>KOG0406|consensus
Probab=99.96 E-value=1.9e-29 Score=211.29 Aligned_cols=187 Identities=20% Similarity=0.270 Sum_probs=147.1
Q ss_pred CCCceEEEeccCChHHHHHHHHHHhcCCCeEEeecccccccCCC-----------CCCceeccCCceeec-hhHhhHhhh
Q psy13369 18 QEGKLRVYSMRFCPYAQRVHLILLAKKIPLTIHVPVTQYRLIGS-----------IFPTWLTTESETHWN-RTCSSYFEQ 85 (311)
Q Consensus 18 ~~~~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~~~~v~~~~~-----------~~p~~l~~~g~~l~E-~~I~~YL~~ 85 (311)
.++.++||++++|||++|++|+|.+|||+||.+ ++|+..+ ++.|.|+++|.+++| .+|++||++
T Consensus 6 ~~~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~v----eedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe 81 (231)
T KOG0406|consen 6 EDGTVKLLGMWFSPFAQRVRIALKLKGIPYEYV----EEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDE 81 (231)
T ss_pred CCCeEEEEEeecChHHHHHHHHHHhcCCceEEE----ecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHh
Confidence 348899999999999999999999999999999 7666541 134448899999999 999999999
Q ss_pred hhccCCCCCCCCCchhHHHhHhHHHHhhchhhhchhHHHHhhhcCCCCCcccHhHHHHhHHHHHHHHhhcCCCcccCCCC
Q psy13369 86 KKRREREMKRSQDPPTQEGKLRVYSMRFCPYAQRLSPAFYKCMMGEGINPSTFGEIVTALEPLEAELKARGTPYLSGSKP 165 (311)
Q Consensus 86 ~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~ 165 (311)
+|++++ +++|+||.+ |++++.|+++++..+...... .....+.+....+.+++...|..||+.|.+ +++|+.|+++
T Consensus 82 ~w~~~~-~iLP~DPy~-Ra~arfwa~~id~~~~~~~~~-~~~~~~~e~~~~~~~e~~e~l~~lE~el~k-~k~~fgG~~~ 157 (231)
T KOG0406|consen 82 TWPSGP-PILPSDPYE-RAQARFWAEYIDKKVFFVGRF-VVAAKGGEEQEAAKEELREALKVLEEELGK-GKDFFGGETI 157 (231)
T ss_pred hccCCC-CCCCCCHHH-HHHHHHHHHHHHhHHHHHHHH-HHhhcCchHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCc
Confidence 998435 899999999 999999999999755332222 111223334445788999999999999973 4589999999
Q ss_pred chHHHHHHHHHHHhHhhhhhcC-CCccCChhhhhhccCCCCCCCCCCce
Q psy13369 166 GMVDYMIWPWLERLPSLAELAG-PEYALPADKFAQLVSSQDPPTQEGKI 213 (311)
Q Consensus 166 tlADi~l~~~~~~~~~~~~~~~-~~~~~~~~~~p~l~~w~~~~~~~~~~ 213 (311)
++.||+++|++.++.......+ .++ .+.+.+|+|.+|.+++.....+
T Consensus 158 G~vDi~~~p~~~~~~~~~~~~~~~~~-~~~~~~P~L~~W~~~~~~~~~V 205 (231)
T KOG0406|consen 158 GFVDIAIGPSFERWLAVLEKFGGVKF-IIEEETPKLIKWIKRMKEDEAV 205 (231)
T ss_pred CHhhhhHHhhHHHHHHHHHHhcCccc-CCCCCCccHHHHHHHHhcChhH
Confidence 9999999999988766553322 222 4567899999999987665544
No 2
>KOG0868|consensus
Probab=99.95 E-value=1e-28 Score=194.39 Aligned_cols=175 Identities=17% Similarity=0.149 Sum_probs=141.7
Q ss_pred CCceEEEeccCChHHHHHHHHHHhcCCCeEEee------------cccccccCCCCCCceeccCCceeec-hhHhhHhhh
Q psy13369 19 EGKLRVYSMRFCPYAQRVHLILLAKKIPLTIHV------------PVTQYRLIGSIFPTWLTTESETHWN-RTCSSYFEQ 85 (311)
Q Consensus 19 ~~~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~------------~~~~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~~ 85 (311)
..+.+||+++.|+||+|||++|..|||+||.+- +++.+||.+ +.+.|++||.+|+| .||.+||++
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~--kVP~L~i~g~tl~eS~AII~YLeE 80 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPME--KVPTLVIDGLTLTESLAIIEYLEE 80 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchh--hCCeEEECCEEeehHHHHHHHHHh
Confidence 457899999999999999999999999999882 133455554 56669999999999 999999999
Q ss_pred hhccCCCCCCCCCchhHHHhHhHHHHhhchhhhchhHH-HHhhhcCCCC---CcccHhHHHHhHHHHHHHHhhcCCCccc
Q psy13369 86 KKRREREMKRSQDPPTQEGKLRVYSMRFCPYAQRLSPA-FYKCMMGEGI---NPSTFGEIVTALEPLEAELKARGTPYLS 161 (311)
Q Consensus 86 ~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~l~~le~~L~~~~~~~l~ 161 (311)
+|| ++ +|+|+|+.. |++.|+....+.+.++++.+. ....+..+.. ..-+..-+.++|..||+.|+.+.|.|.+
T Consensus 81 t~P-~p-pLLP~d~~K-RA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aGkycv 157 (217)
T KOG0868|consen 81 TYP-DP-PLLPKDPHK-RAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSHAGKYCV 157 (217)
T ss_pred cCC-CC-CCCCcCHHH-HHHHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHccCCccc
Confidence 999 77 899999999 999999999998877766543 3333333222 2225677899999999999988899999
Q ss_pred CCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCC
Q psy13369 162 GSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDP 206 (311)
Q Consensus 162 G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 206 (311)
||++|+||+++.|.+.....+. +|...||.+.+-.+.
T Consensus 158 GDevtiADl~L~pqv~nA~rf~--------vdl~PYPti~ri~e~ 194 (217)
T KOG0868|consen 158 GDEVTIADLCLPPQVYNANRFH--------VDLTPYPTITRINEE 194 (217)
T ss_pred Cceeehhhhccchhhhhhhhcc--------ccCCcCchHHHHHHH
Confidence 9999999999999986554444 788889988776553
No 3
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.94 E-value=7.3e-27 Score=199.39 Aligned_cols=177 Identities=17% Similarity=0.191 Sum_probs=132.7
Q ss_pred CceEEEeccCChHHHHHHHHHHhcCCCeEEee--------cccccccCCCCCCceeccCCceeec-hhHhhHhhhhhccC
Q psy13369 20 GKLRVYSMRFCPYAQRVHLILLAKKIPLTIHV--------PVTQYRLIGSIFPTWLTTESETHWN-RTCSSYFEQKKRRE 90 (311)
Q Consensus 20 ~~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~--------~~~~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~~~~~~~ 90 (311)
+.|+||+++.||||+||+++|+++|++||.+. +++.+||.+ +.|.|++||.+|+| .+|++||+++|+ +
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~g--~VPvL~~~g~~l~ES~AIl~YL~~~~~-~ 85 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQ--SVPTLVDRELTLYESRIIMEYLDERFP-H 85 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCCC--CCCEEEECCEEeeCHHHHHHHHHHhCC-C
Confidence 35999999999999999999999999998872 123445554 55668999999999 999999999998 5
Q ss_pred CCCCCCCCchhHHHhHhHHHHhhchhhhchhHHHHhhhcCC-CCCcccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHH
Q psy13369 91 REMKRSQDPPTQEGKLRVYSMRFCPYAQRLSPAFYKCMMGE-GINPSTFGEIVTALEPLEAELKARGTPYLSGSKPGMVD 169 (311)
Q Consensus 91 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlAD 169 (311)
+ .|+|.++.+ |+++++|+.++...+..... ....+. .......+.+...++.||++|++ ++|++|+++|+||
T Consensus 86 ~-~l~p~~~~~-ra~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~~l~G~~~t~AD 158 (211)
T PRK09481 86 P-PLMPVYPVA-RGESRLMMHRIEKDWYSLMN---KIVNGSASEADAARKQLREELLAIAPVFGE--KPYFMSEEFSLVD 158 (211)
T ss_pred C-CCCCCCHHH-HHHHHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHHHHHhcc--CCcccCCCccHHH
Confidence 4 699998877 99999998876543322211 111111 11122456788899999999954 4899999999999
Q ss_pred HHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCCCCCCCc
Q psy13369 170 YMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDPPTQEGK 212 (311)
Q Consensus 170 i~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~ 212 (311)
+++++++.++...+. ++..+.||+|++|.+++.+.+.
T Consensus 159 ~~l~~~~~~~~~~~~------~~~~~~~p~l~~w~~~~~~rp~ 195 (211)
T PRK09481 159 CYLAPLLWRLPVLGI------ELSGPGAKELKGYMTRVFERDS 195 (211)
T ss_pred HHHHHHHHHHHhcCC------CCCCCCChhHHHHHHHHhccHH
Confidence 999999987765441 1223468999999997655543
No 4
>PLN02473 glutathione S-transferase
Probab=99.92 E-value=9.7e-25 Score=186.67 Aligned_cols=181 Identities=14% Similarity=0.087 Sum_probs=129.9
Q ss_pred ceEEEeccCChHHHHHHHHHHhcCCCeEEee-c----------ccccccCCCCCCceeccCCceeec-hhHhhHhhhhhc
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLAKKIPLTIHV-P----------VTQYRLIGSIFPTWLTTESETHWN-RTCSSYFEQKKR 88 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~-~----------~~~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~~~~~ 88 (311)
.|+||+++.||+|+||+++|+++||+|+.+. + +..+||.+ +.|.|++||.+|+| .+|++||+++|+
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g--~vP~L~~~g~~l~ES~aI~~YL~~~~~ 79 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFG--QVPAIEDGDLKLFESRAIARYYATKYA 79 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCC--CCCeEEECCEEEEehHHHHHHHHHHcC
Confidence 6899999999999999999999999998872 1 11235554 55668899999999 999999999997
Q ss_pred cCCCCCCCCCchhHHHhHhHHHHhhchhhhchhH-HHH-hhhc---CCCCCcc----cHhHHHHhHHHHHHHHhhcCCCc
Q psy13369 89 REREMKRSQDPPTQEGKLRVYSMRFCPYAQRLSP-AFY-KCMM---GEGINPS----TFGEIVTALEPLEAELKARGTPY 159 (311)
Q Consensus 89 ~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~---~~~~~~~----~~~~~~~~l~~le~~L~~~~~~~ 159 (311)
..+.+|+|.++.+ ++++++|+.++.+.+..... .+. ..+. +...... ...++.+.|+.||+.|++ ++|
T Consensus 80 ~~~~~l~p~~~~~-ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~ 156 (214)
T PLN02473 80 DQGTDLLGKTLEH-RAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLAT--NRY 156 (214)
T ss_pred CcCCCCCCCCHHH-HHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhcc--CCc
Confidence 2222589988777 99999999877665433211 111 1111 1111111 346788899999999964 379
Q ss_pred ccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCCCCCCC
Q psy13369 160 LSGSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDPPTQEG 211 (311)
Q Consensus 160 l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~ 211 (311)
++|+++|+|||++++.+.+...... . ....+.||+|++|.+++...+
T Consensus 157 l~Gd~~t~ADi~~~~~~~~~~~~~~--~---~~~~~~~P~l~~w~~~~~~~p 203 (214)
T PLN02473 157 LGGDEFTLADLTHMPGMRYIMNETS--L---SGLVTSRENLNRWWNEISARP 203 (214)
T ss_pred ccCCCCCHHHHHHHHHHHHHHhccc--c---HHHHhcCHHHHHHHHHHhcCh
Confidence 9999999999999998876543210 0 011456999999999765544
No 5
>PRK15113 glutathione S-transferase; Provisional
Probab=99.91 E-value=3.2e-24 Score=183.44 Aligned_cols=176 Identities=16% Similarity=0.136 Sum_probs=127.9
Q ss_pred CCceEEEecc--CChHHHHHHHHHHhcCCCeEEee-----------cccccccCCCCCCceeccCCceeec-hhHhhHhh
Q psy13369 19 EGKLRVYSMR--FCPYAQRVHLILLAKKIPLTIHV-----------PVTQYRLIGSIFPTWLTTESETHWN-RTCSSYFE 84 (311)
Q Consensus 19 ~~~~~Ly~~~--~sp~~~rv~~~L~~~gi~~e~~~-----------~~~~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~ 84 (311)
...++||+.+ .||||+||+++|.++||+||.+. .+..+||.+ +.|.|++||.+|+| .+|++||+
T Consensus 3 ~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g--~VP~L~~~~~~l~ES~aI~~YL~ 80 (214)
T PRK15113 3 KPAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTR--RVPTLQHDDFELSESSAIAEYLE 80 (214)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCC--CCCEEEECCEEEecHHHHHHHHH
Confidence 3458999975 79999999999999999998872 123445555 55668899999999 99999999
Q ss_pred hhhccCCCC---CCCCCchhHHHhHhHHHHhhchhhhchhHH-HHh-hhcC---CCCCcccHhHHHHhHHHHHHHHhhcC
Q psy13369 85 QKKRREREM---KRSQDPPTQEGKLRVYSMRFCPYAQRLSPA-FYK-CMMG---EGINPSTFGEIVTALEPLEAELKARG 156 (311)
Q Consensus 85 ~~~~~~~~~---l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~---~~~~~~~~~~~~~~l~~le~~L~~~~ 156 (311)
++|+ ++ . ++|.++.+ ++++++|+.++...+...... ... .+.. +...+...+.+.+.++.||++|+..
T Consensus 81 ~~~~-~~-~~~~l~p~~~~~-ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~- 156 (214)
T PRK15113 81 ERFA-PP-AWERIYPADLQA-RARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPG- 156 (214)
T ss_pred HHcC-CC-CccccCCCCHHH-HHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcC-
Confidence 9997 44 4 99999887 999999998876544321110 000 1111 1112235677889999999999643
Q ss_pred CCcccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCCCCCCC
Q psy13369 157 TPYLSGSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDPPTQEG 211 (311)
Q Consensus 157 ~~~l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~ 211 (311)
++|++|+ +|+|||++++++.++...+ .+.. |+|.+|.+++...+
T Consensus 157 ~~~l~G~-~TlADi~l~~~l~~~~~~~--------~~~~--p~l~~~~~r~~~rp 200 (214)
T PRK15113 157 QPNLFGE-WCIADTDLALMLNRLVLHG--------DEVP--ERLADYATFQWQRA 200 (214)
T ss_pred CCEeeCC-ccHHHHHHHHHHHHHHHcC--------CCCC--HHHHHHHHHHhcCH
Confidence 4699996 9999999999998775443 2222 88888888755444
No 6
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.91 E-value=2.2e-24 Score=183.89 Aligned_cols=177 Identities=15% Similarity=0.172 Sum_probs=129.4
Q ss_pred EEEeccCChHHHHHHHHHHhcCCCeEEee-c-----------ccccccCCCCCCceeccCCceeec-hhHhhHhhhhhcc
Q psy13369 23 RVYSMRFCPYAQRVHLILLAKKIPLTIHV-P-----------VTQYRLIGSIFPTWLTTESETHWN-RTCSSYFEQKKRR 89 (311)
Q Consensus 23 ~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~-~-----------~~~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~~~~~~ 89 (311)
+||++..||+|+|||++|.++||+|+.+. + +..+||.+ +.|.|++||.+|+| .+|++||+++++
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g--~vP~L~~~g~~l~ES~aI~~yl~~~~~- 77 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQG--LVPTLDIDGEVLTQSLAIIEYLEETYP- 77 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCC--cCCEEEECCEEeecHHHHHHHHHHhCC-
Confidence 58999999999999999999999998761 1 12233333 44557889999999 999999999997
Q ss_pred CCCCCCCCCchhHHHhHhHHHHhhchhhhch-hHHHHhhhcCC-CCC-----cccHhHHHHhHHHHHHHHhhcCCCcccC
Q psy13369 90 EREMKRSQDPPTQEGKLRVYSMRFCPYAQRL-SPAFYKCMMGE-GIN-----PSTFGEIVTALEPLEAELKARGTPYLSG 162 (311)
Q Consensus 90 ~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~-----~~~~~~~~~~l~~le~~L~~~~~~~l~G 162 (311)
++ .++|.++.+ ++++++|+.++...+... ...+....... ... ....+.+.+.|+.||++|.+++++|++|
T Consensus 78 ~~-~l~p~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G 155 (210)
T TIGR01262 78 DP-PLLPADPIK-RARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVG 155 (210)
T ss_pred CC-CCCCCCHHH-HHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeC
Confidence 44 699988776 999999988776433221 11111111111 111 1134568899999999997665689999
Q ss_pred CCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCCCCCCCc
Q psy13369 163 SKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDPPTQEGK 212 (311)
Q Consensus 163 ~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~ 212 (311)
+++|+|||++++++.+....+ .+.+.||+|++|.+.+...+.
T Consensus 156 ~~~T~ADi~~~~~l~~~~~~~--------~~~~~~p~l~~~~~~~~~rp~ 197 (210)
T TIGR01262 156 DTPTLADLCLVPQVYNAERFG--------VDLTPYPTLRRIAAALAALPA 197 (210)
T ss_pred CCCCHHHHHHHHHHHHHHHcC--------CCcccchHHHHHHHHHhcCHH
Confidence 999999999999988765333 334679999999997665543
No 7
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.90 E-value=6.4e-24 Score=181.76 Aligned_cols=171 Identities=11% Similarity=0.144 Sum_probs=121.7
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEee-----------cccccccCCCCCCceecc-----CC--ceeec-hhHhhH
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIHV-----------PVTQYRLIGSIFPTWLTT-----ES--ETHWN-RTCSSY 82 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~-----------~~~~v~~~~~~~p~~l~~-----~g--~~l~E-~~I~~Y 82 (311)
++||+.+ +|+|+||+++|+++||+||.+. +++.+||.+ +.|.|++ || .+|+| .+|++|
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~g--kVP~L~~~~~~d~g~~~~L~ES~AI~~Y 78 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNN--KIPAIVDHSPADGGEPLSLFESGAILLY 78 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCC--CCCEEEeCCCCCCCCceeEEcHHHHHHH
Confidence 7999887 8999999999999999998862 123455555 4455664 56 47999 999999
Q ss_pred hhhhhccCCCCCCCCCchhHHHhHhHHHHhhchhhhchhHHHHhhhc-CCCCCc----ccHhHHHHhHHHHHHHHhhcCC
Q psy13369 83 FEQKKRREREMKRSQDPPTQEGKLRVYSMRFCPYAQRLSPAFYKCMM-GEGINP----STFGEIVTALEPLEAELKARGT 157 (311)
Q Consensus 83 L~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~l~~le~~L~~~~~ 157 (311)
|+++|+ .+.|.++.+ ++++++|+.+....+.........+.. .+.... .....+.+.|..||++|++ +
T Consensus 79 L~~~~~----~l~p~~~~~-ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~ 151 (215)
T PRK13972 79 LAEKTG----LFLSHETRE-RAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLEN--S 151 (215)
T ss_pred HHHhcC----CCCCCCHHH-HHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhcc--C
Confidence 999985 477878777 999999998876644332211100001 111111 1345688899999999964 3
Q ss_pred CcccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCCCCCC
Q psy13369 158 PYLSGSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDPPTQE 210 (311)
Q Consensus 158 ~~l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 210 (311)
+|++|+++|+|||++++++.+....+ .+.+.||+|.+|.+++...
T Consensus 152 ~~l~Gd~~t~ADi~l~~~~~~~~~~~--------~~~~~~P~l~~w~~r~~~r 196 (215)
T PRK13972 152 PWLGGENYSIADIACWPWVNAWTRQR--------IDLAMYPAVKNWHERIRSR 196 (215)
T ss_pred ccccCCCCCHHHHHHHHHHHHHhhcC--------CcchhCHHHHHHHHHHHhC
Confidence 79999999999999998775443222 3356799999999975433
No 8
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.3e-23 Score=176.81 Aligned_cols=173 Identities=20% Similarity=0.242 Sum_probs=127.9
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEeec----------ccccccCCCCCCceeccCCc-eeec-hhHhhHhhhhhcc
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIHVP----------VTQYRLIGSIFPTWLTTESE-THWN-RTCSSYFEQKKRR 89 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~----------~~~v~~~~~~~p~~l~~~g~-~l~E-~~I~~YL~~~~~~ 89 (311)
++||+++.||||+||+++|.++|++|+.+.. +..+||.+ +.|.|++||. +|+| .+|++||+++|+
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~g--kVPvL~~~~~~~l~ES~AI~~YL~~~~~- 77 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLG--KVPALVDDDGEVLTESGAILEYLAERYP- 77 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCC--CCCEEeeCCCCeeecHHHHHHHHHhhCC-
Confidence 5899999999999999999999999988831 22444544 4555666655 8999 999999999997
Q ss_pred CCCCCCCCCchh--HHHhHhHHHHhhchhhhchhHHHHhhhcCCCCC------cccHhHHHHhHHHHHHHHhhcCCCccc
Q psy13369 90 EREMKRSQDPPT--QEGKLRVYSMRFCPYAQRLSPAFYKCMMGEGIN------PSTFGEIVTALEPLEAELKARGTPYLS 161 (311)
Q Consensus 90 ~~~~l~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~le~~L~~~~~~~l~ 161 (311)
++ .++|.++.. +|+++..|..++...+................. ....+.+...++.+|+.|++ ++|++
T Consensus 78 ~~-~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~ 154 (211)
T COG0625 78 GP-PLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLAD--GPYLA 154 (211)
T ss_pred CC-CcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhcc--CCccc
Confidence 43 399999863 488888888887654443332221111111111 12567889999999999975 48999
Q ss_pred CCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCCCC
Q psy13369 162 GSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDPPT 208 (311)
Q Consensus 162 G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~ 208 (311)
|+++|+||+++++.+.++...+ .+.+.||++++|.++..
T Consensus 155 G~~~tiAD~~~~~~~~~~~~~~--------~~~~~~p~l~~w~~r~~ 193 (211)
T COG0625 155 GDRFTIADIALAPLLWRLALLG--------EELADYPALKAWYERVL 193 (211)
T ss_pred CCCCCHHHHHHHHHHHHhhhcC--------cccccChHHHHHHHHHH
Confidence 9999999999999998865554 22367999999998643
No 9
>PRK11752 putative S-transferase; Provisional
Probab=99.89 E-value=4.1e-23 Score=181.81 Aligned_cols=183 Identities=15% Similarity=0.168 Sum_probs=127.4
Q ss_pred CCCCceEEEeccCChHHHHHHHHHHhc------CCCeEEee-----------cccccccCCCCCCceeccC----Cceee
Q psy13369 17 TQEGKLRVYSMRFCPYAQRVHLILLAK------KIPLTIHV-----------PVTQYRLIGSIFPTWLTTE----SETHW 75 (311)
Q Consensus 17 ~~~~~~~Ly~~~~sp~~~rv~~~L~~~------gi~~e~~~-----------~~~~v~~~~~~~p~~l~~~----g~~l~ 75 (311)
..++.|+||+.. ||||+||+++|+++ |++||.+. ++..+||.+ +.|.|+++ |.+|+
T Consensus 40 ~~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~G--kVP~Lv~~dg~~~~~L~ 116 (264)
T PRK11752 40 VGKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNS--KIPALLDRSGNPPIRVF 116 (264)
T ss_pred CCCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCC--CCCEEEeCCCCCCeEEE
Confidence 456689999965 99999999999997 89998762 133556665 55556653 36899
Q ss_pred c-hhHhhHhhhhhccCCCCCCCCCchhHHHhHhHHHHhhchhhhchhHHHHhhh-cCCCCCc----ccHhHHHHhHHHHH
Q psy13369 76 N-RTCSSYFEQKKRREREMKRSQDPPTQEGKLRVYSMRFCPYAQRLSPAFYKCM-MGEGINP----STFGEIVTALEPLE 149 (311)
Q Consensus 76 E-~~I~~YL~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~l~~le 149 (311)
| .+|++||+++|+ .|+|.++.+ ++++++|+.+.......+...+...+ ..+.... ....++.+.|+.||
T Consensus 117 ES~AIl~YL~~~~~----~L~P~~~~e-ra~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le 191 (264)
T PRK11752 117 ESGAILLYLAEKFG----AFLPKDLAA-RTETLNWLFWQQGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLD 191 (264)
T ss_pred cHHHHHHHHHHhcC----CcCCCCHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHH
Confidence 9 999999999995 589988777 99999998876543211111111111 1122111 13456888999999
Q ss_pred HHHhhcCCCcccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCCCCCC
Q psy13369 150 AELKARGTPYLSGSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDPPTQE 210 (311)
Q Consensus 150 ~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 210 (311)
++|++ ++|++|+++|+|||++++++.++..........+ .+.+.||++++|.+++.+.
T Consensus 192 ~~L~~--~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~-~~~~~~P~L~~w~~rv~~r 249 (264)
T PRK11752 192 KQLAE--HEYIAGDEYTIADIAIWPWYGNLVLGNLYDAAEF-LDVGSYKHVQRWAKEIAER 249 (264)
T ss_pred HHhcc--CCCCCCCccCHHHHHHHHHHHHHhhccccccccc-cCcccCHHHHHHHHHHHhC
Confidence 99964 3799999999999999998876643211111111 2356799999999975444
No 10
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.89 E-value=1.1e-23 Score=178.29 Aligned_cols=171 Identities=8% Similarity=0.099 Sum_probs=123.4
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEee-c-----------ccccccCCCCCCceec-cCCceeec-hhHhhHhhhhh
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIHV-P-----------VTQYRLIGSIFPTWLT-TESETHWN-RTCSSYFEQKK 87 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~-~-----------~~~v~~~~~~~p~~l~-~~g~~l~E-~~I~~YL~~~~ 87 (311)
|+||++.. ++|+||+++|+++||+|+.+. + +..+||.+ +.|.|+ +||.+|+| .+|++||++++
T Consensus 1 m~l~~~~~-s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g--~vPvL~~~~g~~l~eS~aI~~YL~~~~ 77 (201)
T PRK10542 1 MKLFYKPG-ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKG--QVPALLLDDGTLLTEGVAIMQYLADSV 77 (201)
T ss_pred Cceeeccc-HHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCC--CCCeEEeCCCcEeecHHHHHHHHHHhC
Confidence 68999885 489999999999999998862 1 22344444 445565 68899999 99999999999
Q ss_pred ccCCCCCC-CCCchhHHHhHhHHHHhhchhhhchhHHHHhhhcCCCCC---cccHhHHHHhHHHHHHHHhhcCCCcccCC
Q psy13369 88 RREREMKR-SQDPPTQEGKLRVYSMRFCPYAQRLSPAFYKCMMGEGIN---PSTFGEIVTALEPLEAELKARGTPYLSGS 163 (311)
Q Consensus 88 ~~~~~~l~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~le~~L~~~~~~~l~G~ 163 (311)
+ ++ .++ |.++.+ +++++.|+.++...+.. .+...+...... ....+.+.+.|+.||+.|++ ++|++|+
T Consensus 78 ~-~~-~l~~p~~~~~-ra~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~ 149 (201)
T PRK10542 78 P-DR-QLLAPVGSLS-RYHTIEWLNYIATELHK---GFTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALAD--EQWICGQ 149 (201)
T ss_pred c-cc-ccCCCCCcHH-HHHHHHHHHHHHhhhhh---hhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhcC--CCeeeCC
Confidence 8 44 455 556666 88888998876653322 222222211111 12456788999999999964 3799999
Q ss_pred CCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCCCCCCC
Q psy13369 164 KPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDPPTQEG 211 (311)
Q Consensus 164 ~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~ 211 (311)
++|+|||++++++.+....+ .+.+.||+|.+|.+++...+
T Consensus 150 ~~s~ADi~l~~~~~~~~~~~--------~~~~~~p~l~~w~~~~~~~p 189 (201)
T PRK10542 150 RFTIADAYLFTVLRWAYAVK--------LNLEGLEHIAAYMQRVAERP 189 (201)
T ss_pred CCcHHhHHHHHHHHHhhccC--------CCcccchHHHHHHHHHHcCH
Confidence 99999999999987764433 33456999999999765544
No 11
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.89 E-value=9.4e-23 Score=172.81 Aligned_cols=177 Identities=16% Similarity=0.109 Sum_probs=126.1
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEee--------cccccccCCCCCCceec-cCCceeec-hhHhhHhhhhhccCC
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIHV--------PVTQYRLIGSIFPTWLT-TESETHWN-RTCSSYFEQKKRRER 91 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~--------~~~~v~~~~~~~p~~l~-~~g~~l~E-~~I~~YL~~~~~~~~ 91 (311)
++||+++.||+++||+++|+++||+|+.+. .+..+||.+ +.|.|+ +||.+|+| .+|++||+++++ ++
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~g--~vP~L~~~~g~~l~eS~aI~~yL~~~~~-~~ 77 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPLG--KVPALVTEEGECWFDSPIIAEYIELLNV-AP 77 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCcc--CCCeEEeCCCCeeecHHHHHHHHHHhCC-CC
Confidence 589999999999999999999999998762 122455555 556675 78999999 999999999987 44
Q ss_pred CCCCCCCchhHHHhHhHHHHhhchhhhchhHHHHhhhcCC-CCCc----ccHhHHHHhHHHHHHHHhhcCCCcccCCCCc
Q psy13369 92 EMKRSQDPPTQEGKLRVYSMRFCPYAQRLSPAFYKCMMGE-GINP----STFGEIVTALEPLEAELKARGTPYLSGSKPG 166 (311)
Q Consensus 92 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t 166 (311)
.|+|.++.+ ++++++|..+....+......+....... .... .....+.+.|+.||++|++ ++ ++|+++|
T Consensus 78 -~l~p~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~-l~Gd~~t 152 (202)
T PRK10357 78 -AMLPRDPLA-ALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVD--GT-LKTDTVN 152 (202)
T ss_pred -CCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhcc--Cc-ccCCCcC
Confidence 699988877 88888887765544322222111111111 1111 2456788999999999964 46 9999999
Q ss_pred hHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCCCCCCC
Q psy13369 167 MVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDPPTQEG 211 (311)
Q Consensus 167 lADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~ 211 (311)
+|||++++.+.+...... . +.....||++++|.+++.+..
T Consensus 153 ~ADi~l~~~l~~~~~~~~--~---~~~~~~~p~l~~~~~~i~~rp 192 (202)
T PRK10357 153 LATIAIACAVGYLNFRRV--A---PGWCVDRPHLVKLVENLFQRE 192 (202)
T ss_pred HHHHHHHHHHHHHHhccc--C---cchhhcChHHHHHHHHHhcCh
Confidence 999999999876644221 0 011245899999998765543
No 12
>PLN02395 glutathione S-transferase
Probab=99.88 E-value=1e-22 Score=174.27 Aligned_cols=180 Identities=17% Similarity=0.193 Sum_probs=126.3
Q ss_pred ceEEEeccCChHHHHHHHHHHhcCCCeEEee-----------cccccccCCCCCCceeccCCceeec-hhHhhHhhhhhc
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLAKKIPLTIHV-----------PVTQYRLIGSIFPTWLTTESETHWN-RTCSSYFEQKKR 88 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~-----------~~~~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~~~~~ 88 (311)
.++||+.+. ++++||+++|+++|++|+.+. ++..+||.+ +.|.|+++|.+|+| .+|++||+++|+
T Consensus 2 ~~~ly~~~~-~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g--~vP~L~~~~~~l~ES~aI~~YL~~~~~ 78 (215)
T PLN02395 2 VLKVYGPAF-ASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFG--VVPVIVDGDYKIFESRAIMRYYAEKYR 78 (215)
T ss_pred eEEEEcCCc-CcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCC--CCCEEEECCEEEEcHHHHHHHHHHHcC
Confidence 489999764 569999999999999998762 133455655 55668899999999 999999999997
Q ss_pred cCCCCCCCCCchhHHHhHhHHHHhhchhhhc-hhHHHHhhh----cCCCCC----cccHhHHHHhHHHHHHHHhhcCCCc
Q psy13369 89 REREMKRSQDPPTQEGKLRVYSMRFCPYAQR-LSPAFYKCM----MGEGIN----PSTFGEIVTALEPLEAELKARGTPY 159 (311)
Q Consensus 89 ~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~----~~~~~~~~~~l~~le~~L~~~~~~~ 159 (311)
.....++|.++.+ ++++++|+.+....+.. +........ .+.... ....+.+.+.++.||+.|++ ++|
T Consensus 79 ~~~~~l~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~ 155 (215)
T PLN02395 79 SQGPDLLGKTIEE-RGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSK--SKY 155 (215)
T ss_pred CCCcCcCCCChhH-HHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcC--Ccc
Confidence 2211599998887 99999999876654322 212111111 111111 12456788899999999964 379
Q ss_pred ccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCCCCCCC
Q psy13369 160 LSGSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDPPTQEG 211 (311)
Q Consensus 160 l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~ 211 (311)
++|+++|+||+++++++.++.... + .....+.||+|.+|.+.+.+.+
T Consensus 156 l~G~~~s~ADi~l~~~~~~~~~~~---~--~~~~~~~~p~L~~w~~~~~~rp 202 (215)
T PLN02395 156 LAGDFVSLADLAHLPFTEYLVGPI---G--KAYLIKDRKHVSAWWDDISSRP 202 (215)
T ss_pred ccCCCcCHHHHHHHHHHHHHhccc---c--hhhhhccCchHHHHHHHHHcCh
Confidence 999999999999999887653210 0 0122456899999999755443
No 13
>PRK10387 glutaredoxin 2; Provisional
Probab=99.87 E-value=3.1e-22 Score=170.61 Aligned_cols=168 Identities=15% Similarity=0.268 Sum_probs=118.1
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEeeccccccc-----------CCCCCCcee-ccCCceeec-hhHhhHhhhhhc
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIHVPVTQYRL-----------IGSIFPTWL-TTESETHWN-RTCSSYFEQKKR 88 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~~~~v~~-----------~~~~~p~~l-~~~g~~l~E-~~I~~YL~~~~~ 88 (311)
|+||++..||||+||+++|+++||+|+.+ .++. .+ +.|.| .+||.+|+| .+|++||+++|+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~----~~~~~~~~~~~~~~p~~--~VPvL~~~~g~~l~eS~aI~~yL~~~~~ 74 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELI----VLANDDEATPIRMIGQK--QVPILQKDDGSYMPESLDIVHYIDELDG 74 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEE----EcCCCchhhHHHhcCCc--ccceEEecCCeEecCHHHHHHHHHHhCC
Confidence 68999999999999999999999999987 4432 22 45556 689999999 999999999997
Q ss_pred cCCCCCCCCCchhHHHhHhHHHHhhchhhhch-hHHHHhhhc------------------CCC-------CCcccHhHHH
Q psy13369 89 REREMKRSQDPPTQEGKLRVYSMRFCPYAQRL-SPAFYKCMM------------------GEG-------INPSTFGEIV 142 (311)
Q Consensus 89 ~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------------------~~~-------~~~~~~~~~~ 142 (311)
++ +++ . .. ++.++.|+++....+... ...+..... ... ......+.+.
T Consensus 75 -~~--~l~-~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (210)
T PRK10387 75 -KP--LLT-G-KR-SPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEIN 148 (210)
T ss_pred -Cc--cCC-C-cc-cHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHH
Confidence 43 444 1 23 666777776654433211 111110000 000 0123456888
Q ss_pred HhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCCCCCCCce
Q psy13369 143 TALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDPPTQEGKI 213 (311)
Q Consensus 143 ~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~ 213 (311)
+.|+.||++|+ + +|++|+++|+||+++++++.++...+. + +.+|+|.+|.+++......
T Consensus 149 ~~l~~le~~L~--~-~~l~G~~~s~ADi~l~~~l~~~~~~~~-------~--~~~p~l~~w~~r~~~r~~~ 207 (210)
T PRK10387 149 ADLRALDPLIV--K-PNAVNGELSTDDIHLFPILRNLTLVKG-------I--EWPPRVADYRDNMSKKTQV 207 (210)
T ss_pred HHHHHHHHHhc--C-ccccCCCCCHHHHHHHHHHhcceeecC-------C--CCCHHHHHHHHHHHHHhCC
Confidence 99999999994 2 799999999999999999988765431 2 2369999999876554443
No 14
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.86 E-value=4.4e-22 Score=169.11 Aligned_cols=179 Identities=12% Similarity=0.064 Sum_probs=122.8
Q ss_pred CceEEEeccCChHHHHHHHHHHhcCCCeEEeec------c------c--ccccCCCCCCceeccCCceeec-hhHhhHhh
Q psy13369 20 GKLRVYSMRFCPYAQRVHLILLAKKIPLTIHVP------V------T--QYRLIGSIFPTWLTTESETHWN-RTCSSYFE 84 (311)
Q Consensus 20 ~~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~------~------~--~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~ 84 (311)
++++||+++.++++++||++|+++|++|+.+.. + + .+||.+ +.|.|++||.+|+| .+|++||+
T Consensus 3 ~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g--~vP~L~~~~~~l~eS~AI~~YLa 80 (205)
T PTZ00057 3 EEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFE--QVPILEMDNIIFAQSQAIVRYLS 80 (205)
T ss_pred CceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCC--CCCEEEECCEEEecHHHHHHHHH
Confidence 459999999999999999999999999988621 0 0 246666 67789999999999 99999999
Q ss_pred hhhccCCCCCCCCCchhHHHhHhHHHHhhchhhhchhHHHHhhhcCCCCCcccHhHHHHhHHHHHHHHhhcCCCcccCCC
Q psy13369 85 QKKRREREMKRSQDPPTQEGKLRVYSMRFCPYAQRLSPAFYKCMMGEGINPSTFGEIVTALEPLEAELKARGTPYLSGSK 164 (311)
Q Consensus 85 ~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~ 164 (311)
++|+ +.+.+..+ ++.++.....+.+....+... ..+ .....+.....+.+.++.||+.|++++++|++|++
T Consensus 81 ~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~ 151 (205)
T PTZ00057 81 KKYK-----ICGESELN-EFYADMIFCGVQDIHYKFNNT--NLF-KQNETTFLNEELPKWSGYFENILKKNHCNYFVGDN 151 (205)
T ss_pred HHcC-----CCCCCHHH-HHHHHHHHHHHHHHHHHHhhh--HHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCc
Confidence 9995 33434222 333333222211111111110 000 00111224577889999999999866568999999
Q ss_pred CchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCCCCCCCceeee
Q psy13369 165 PGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDPPTQEGKIRVY 216 (311)
Q Consensus 165 ~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~Ly 216 (311)
+|+||+++++++.++.... +.+.+.||+|++|.++..+.+.++=|
T Consensus 152 ~T~AD~~l~~~~~~~~~~~-------~~~l~~~P~l~~~~~r~~~~P~~k~y 196 (205)
T PTZ00057 152 LTYADLAVFNLYDDIETKY-------PNSLKNFPLLKAHNEFISNLPNIKNY 196 (205)
T ss_pred ccHHHHHHHHHHHHHHHhC-------hhhhccChhHHHHHHHHHhChHHHHH
Confidence 9999999999987764311 24456799999999987666655444
No 15
>PLN02378 glutathione S-transferase DHAR1
Probab=99.85 E-value=5.1e-21 Score=163.47 Aligned_cols=165 Identities=18% Similarity=0.248 Sum_probs=114.4
Q ss_pred cCChHHHHHHHHHHhcCCCeEEee--------cccccccCCCCCCceeccCCceeec-hhHhhHhhhhhccCCCCCCCCC
Q psy13369 28 RFCPYAQRVHLILLAKKIPLTIHV--------PVTQYRLIGSIFPTWLTTESETHWN-RTCSSYFEQKKRREREMKRSQD 98 (311)
Q Consensus 28 ~~sp~~~rv~~~L~~~gi~~e~~~--------~~~~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~~~~~~~~~~l~p~~ 98 (311)
..||||+||+++|+++|++|+.+. ++..+||.+ +.|.|++||.+|+| .+|++||+++|+ ++ .+ .+
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~G--~VPvL~~~~~~l~ES~aI~~YL~~~~~-~~-~l--~~ 91 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQG--KVPVLKIDDKWVTDSDVIVGILEEKYP-DP-PL--KT 91 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCCC--CCCEEEECCEEecCHHHHHHHHHHhCC-CC-CC--CC
Confidence 469999999999999999998772 133455555 56668899999999 999999999997 43 34 34
Q ss_pred chhHHHhHhHHHHhhchhhhchhHHHHhhhcCCCCCcccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHH
Q psy13369 99 PPTQEGKLRVYSMRFCPYAQRLSPAFYKCMMGEGINPSTFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLER 178 (311)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~ 178 (311)
+.+ ++++...+. . .+..+...........+.+.+.|+.||++|+.++++|++||++|+||+++++++.+
T Consensus 92 ~~~-~a~i~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~ 160 (213)
T PLN02378 92 PAE-FASVGSNIF-------G---TFGTFLKSKDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYH 160 (213)
T ss_pred HHH-HHHHHHHHH-------H---HHHHHHhcCChhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhhHHHHHHHHH
Confidence 444 555433221 1 11111222222223456788899999999975556899999999999999999887
Q ss_pred hHhh-hhhcCCCccCChhhhhhccCCCCCCCCCCc
Q psy13369 179 LPSL-AELAGPEYALPADKFAQLVSSQDPPTQEGK 212 (311)
Q Consensus 179 ~~~~-~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~ 212 (311)
+... +... .+. ..+.||++++|.+++...+.
T Consensus 161 l~~~~~~~~--~~~-~~~~~p~l~~w~~~~~~rpa 192 (213)
T PLN02378 161 LQVALGHFK--SWS-VPESFPHVHNYMKTLFSLDS 192 (213)
T ss_pred HHHHHHHhc--CCC-chhHhHHHHHHHHHHhcCCC
Confidence 6532 2111 111 23579999999998765543
No 16
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.84 E-value=5.5e-21 Score=164.19 Aligned_cols=166 Identities=16% Similarity=0.246 Sum_probs=112.9
Q ss_pred ccCChHHHHHHHHHHhcCCCeEEee--------cccccccCCCCCCceeccCCceeec-hhHhhHhhhhhccC--CCCCC
Q psy13369 27 MRFCPYAQRVHLILLAKKIPLTIHV--------PVTQYRLIGSIFPTWLTTESETHWN-RTCSSYFEQKKRRE--REMKR 95 (311)
Q Consensus 27 ~~~sp~~~rv~~~L~~~gi~~e~~~--------~~~~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~~~~~~~--~~~l~ 95 (311)
...||||+||+++|.+|||+|+.+. ++..+||.+ +.|.|+++|.+|+| .+|++||+++|+.. + .+.
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~g--~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p-~l~ 92 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGT--HPPFLTYNTEVKTDVNKIEEFLEETLCPPRYP-KLS 92 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcCC--CCCEEEECCEEeecHHHHHHHHHHHcCCCCCC-CCC
Confidence 4679999999999999999999882 122334444 55668899999999 99999999999621 2 345
Q ss_pred CCCchhHHHhHhHHHHhhchhhhchhHHHHhhhcCCCC--CcccHhHHHHhHHHHHHHHhhc----------------CC
Q psy13369 96 SQDPPTQEGKLRVYSMRFCPYAQRLSPAFYKCMMGEGI--NPSTFGEIVTALEPLEAELKAR----------------GT 157 (311)
Q Consensus 96 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~le~~L~~~----------------~~ 157 (311)
|.++.. ++.. .+ +...+..++.+... .....+++.+.++.||+.|.+. ++
T Consensus 93 p~~~~~-~~~~---~~--------l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~ 160 (236)
T TIGR00862 93 PKHPES-NTAG---LD--------IFAKFSAYIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRR 160 (236)
T ss_pred CCCHHH-HHHH---HH--------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCC
Confidence 544433 2221 11 11111121222111 1123456889999999999741 46
Q ss_pred CcccCCCCchHHHHHHHHHHHhHhhh-hhcCCCccCC-hhhhhhccCCCCCCCCCC
Q psy13369 158 PYLSGSKPGMVDYMIWPWLERLPSLA-ELAGPEYALP-ADKFAQLVSSQDPPTQEG 211 (311)
Q Consensus 158 ~~l~G~~~tlADi~l~~~~~~~~~~~-~~~~~~~~~~-~~~~p~l~~w~~~~~~~~ 211 (311)
+|++|+++|+|||+++|++.++..+. ...+ ++ .+.||+|.+|.+++....
T Consensus 161 ~f~~Gd~~tlaD~~l~p~l~~l~~~~~~~~~----~~i~~~~p~l~~w~~~~~~~~ 212 (236)
T TIGR00862 161 KFLDGDELTLADCNLLPKLHIVKVVAKKYRN----FDIPAEFTGVWRYLSNAYARE 212 (236)
T ss_pred CcccCCccchhhHHHHHHHHHHHHHHHHHhC----cCccccCchHHHHHHHHhccc
Confidence 89999999999999999999988652 2222 33 567999999999765444
No 17
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.84 E-value=2.5e-20 Score=159.06 Aligned_cols=99 Identities=24% Similarity=0.409 Sum_probs=93.0
Q ss_pred CceeeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHHhcCCCCC
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDEKYEGNRK 290 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~~~~ 290 (311)
+.++||+.+.|++|++++++|+++|++|+.+.+++.++.++|+++||.|+||+|+++|..|+||.||++||+++++.+ .
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~-~ 87 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHP-P 87 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCCC-C
Confidence 458999999999999999999999999999999998888899999999999999999999999999999999999877 7
Q ss_pred CCCCCHHHHHHHHHHHHHhc
Q psy13369 291 LIASSPLQRALDRIFLETFG 310 (311)
Q Consensus 291 l~~~~~~~~a~~~~~~~~~~ 310 (311)
|+|.++.+++.++.|+.+++
T Consensus 88 l~p~~~~~ra~~~~~~~~~~ 107 (211)
T PRK09481 88 LMPVYPVARGESRLMMHRIE 107 (211)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999987653
No 18
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.83 E-value=6.8e-21 Score=162.23 Aligned_cols=173 Identities=19% Similarity=0.332 Sum_probs=115.7
Q ss_pred EEEeccCChHHHHHHHHHHhcCCCeEEeec-------ccccccCCCCCCceec-cCCceeec-hhHhhHhhhhhccCCCC
Q psy13369 23 RVYSMRFCPYAQRVHLILLAKKIPLTIHVP-------VTQYRLIGSIFPTWLT-TESETHWN-RTCSSYFEQKKRREREM 93 (311)
Q Consensus 23 ~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~-------~~~v~~~~~~~p~~l~-~~g~~l~E-~~I~~YL~~~~~~~~~~ 93 (311)
+||++..||||+|||++|.++|++|+.+.. ...+|+.+ +.|.|+ +||.+++| .+|++||+++|+ .+
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~~~~~~np~g--~vP~l~~~~g~~l~es~~I~~yL~~~~~-~~-- 75 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEETPIRMIGAK--QVPILQKDDGRAMPESLDIVAYFDKLDG-EP-- 75 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcchhHHHhcCCC--CcceEEeeCCeEeccHHHHHHHHHHhCC-Cc--
Confidence 689999999999999999999999987621 11334444 556676 89999999 999999999997 33
Q ss_pred CCCCCchhHHHhHhHHHHhhchhhhch-hHHHHh-------------hhcCC------------CCCcccHhHHHHhHHH
Q psy13369 94 KRSQDPPTQEGKLRVYSMRFCPYAQRL-SPAFYK-------------CMMGE------------GINPSTFGEIVTALEP 147 (311)
Q Consensus 94 l~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------------~~~~~------------~~~~~~~~~~~~~l~~ 147 (311)
+++.. . +..++.|+.++...+... .+.+.. .+..+ .......+.+.+.|+.
T Consensus 76 ~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 152 (209)
T TIGR02182 76 LLTGK--V-SPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEE 152 (209)
T ss_pred cCCCC--C-hHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHH
Confidence 33322 2 445566665544333211 111100 00000 0012355778899999
Q ss_pred HHHHHhhcCCCcccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhh-hccCCCCCCCCCCceeee
Q psy13369 148 LEAELKARGTPYLSGSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFA-QLVSSQDPPTQEGKIRVY 216 (311)
Q Consensus 148 le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p-~l~~w~~~~~~~~~~~Ly 216 (311)
||++|+++ +|++ +++|+||+++++++.++...+. . .+| +|.+|.+++.....++||
T Consensus 153 le~~L~~~--~~l~-g~~TiADi~l~~~l~~~~~~~~-------~---~~p~~l~~w~~Ri~ar~~~~~~ 209 (209)
T TIGR02182 153 LDKLIDGP--NAVN-GELSEDDILVFPLLRNLTLVAG-------I---NWPSRVADYLDNMSKKSKVPLL 209 (209)
T ss_pred HHHHHhCc--cccC-CCCCHHHHHHHHHhcCeeeecC-------C---CCChHHHHHHHHHHHHhCCCCC
Confidence 99999654 7985 4699999999999887664331 1 156 999999987666665553
No 19
>KOG0867|consensus
Probab=99.82 E-value=3.1e-20 Score=159.64 Aligned_cols=178 Identities=15% Similarity=0.153 Sum_probs=135.9
Q ss_pred ceEEEeccCChHHHHHHHHHHhcCCCeEEee-----------cccccccCCCCCCceeccCCceeec-hhHhhHhhhhhc
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLAKKIPLTIHV-----------PVTQYRLIGSIFPTWLTTESETHWN-RTCSSYFEQKKR 88 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~-----------~~~~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~~~~~ 88 (311)
+++||++..||.|++|.+++.++|++||.+. ++..+||.+ +.|.|+|||..++| .+|+.||+++|.
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~--kVP~l~d~~~~l~eS~AI~~Yl~~ky~ 79 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLG--KVPALEDGGLTLWESHAILRYLAEKYG 79 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCC--CCCeEecCCeEEeeHHHHHHHHHHHcC
Confidence 6899999999999999999999999999982 123455555 55558999999999 999999999997
Q ss_pred cCCCC-CCCCCchhHHHhHhHHHHhhchhhhchh---HHHHhhhcC----CCCCcccHhHHHHhHHHHHHHHhhcCCCcc
Q psy13369 89 REREM-KRSQDPPTQEGKLRVYSMRFCPYAQRLS---PAFYKCMMG----EGINPSTFGEIVTALEPLEAELKARGTPYL 160 (311)
Q Consensus 89 ~~~~~-l~p~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~l~~le~~L~~~~~~~l 160 (311)
..+. ++|.++.. |+.+.+|+++..+.+.... ..+.....+ .........++...++.+|..|.++ .|+
T Consensus 80 -~~~~~l~p~~~~~-ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~--~yl 155 (226)
T KOG0867|consen 80 -PLGGILLPKDLKE-RAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQ--VYL 155 (226)
T ss_pred -CCCcccCCcCHHH-HHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccC--Ccc
Confidence 4335 99999877 9999999988777554331 112221111 1222346789999999999999764 799
Q ss_pred cCCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCCCCC
Q psy13369 161 SGSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDPPTQ 209 (311)
Q Consensus 161 ~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~ 209 (311)
+|+++|+||+.+.+.+..+.. ... ...+.+.||++.+|.+.+..
T Consensus 156 ~g~~~tlADl~~~~~~~~~~~-~~~----~~~~~~~~p~v~~W~~~~~~ 199 (226)
T KOG0867|consen 156 AGDQLTLADLSLASTLSQFQG-KFA----TEKDFEKYPKVARWYERIQK 199 (226)
T ss_pred cCCcccHHHHHHhhHHHHHhH-hhh----hhhhhhhChHHHHHHHHHHh
Confidence 999999999999999887742 211 02567789999999997544
No 20
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.82 E-value=4.3e-20 Score=161.97 Aligned_cols=162 Identities=17% Similarity=0.238 Sum_probs=113.2
Q ss_pred CChHHHHHHHHHHhcCCCeEEee-c-------ccccccCCCCCCceeccCCceeec-hhHhhHhhhhhccCCCCCCCCCc
Q psy13369 29 FCPYAQRVHLILLAKKIPLTIHV-P-------VTQYRLIGSIFPTWLTTESETHWN-RTCSSYFEQKKRREREMKRSQDP 99 (311)
Q Consensus 29 ~sp~~~rv~~~L~~~gi~~e~~~-~-------~~~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~~~~~~~~~~l~p~~~ 99 (311)
.||||+||+++|+++||+|+.+. + +..+||.+ +.|.|++||.+|+| .+|++||+++|+ ++ .+. ++
T Consensus 72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~G--kVPvL~~d~~~L~ES~aI~~YL~e~~p-~~-~L~--~~ 145 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEG--KVPVVKLDEKWVADSDVITQALEEKYP-DP-PLA--TP 145 (265)
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCCC--CCCEEEECCEEEecHHHHHHHHHHHCC-CC-CCC--CH
Confidence 59999999999999999998762 1 33555555 56668888899999 999999999998 44 453 44
Q ss_pred hhHHHhHhHHHHhhchhhhchhHHHHhhhcCCCCCcccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHh
Q psy13369 100 PTQEGKLRVYSMRFCPYAQRLSPAFYKCMMGEGINPSTFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERL 179 (311)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~ 179 (311)
.+ +++++.++.. . +..++..........+.+.+.|+.||+.|+++ ++|++|+++|+|||+++|++.++
T Consensus 146 ~e-ra~i~~~l~~------~----~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~~-g~yl~Gd~~SlADi~l~p~L~~l 213 (265)
T PLN02817 146 PE-KASVGSKIFS------T----FIGFLKSKDPGDGTEQALLDELTSFDDYIKEN-GPFINGEKISAADLSLGPKLYHL 213 (265)
T ss_pred HH-HHHHHHHHHH------H----HHHHhccCCcchHHHHHHHHHHHHHHHHHhcC-CCeeCCCCCCHHHHHHHHHHHHH
Confidence 44 7766554321 1 11112221111223467888999999999753 58999999999999999999877
Q ss_pred Hhh-hhhcCCCccCChhhhhhccCCCCCCCCCC
Q psy13369 180 PSL-AELAGPEYALPADKFAQLVSSQDPPTQEG 211 (311)
Q Consensus 180 ~~~-~~~~~~~~~~~~~~~p~l~~w~~~~~~~~ 211 (311)
... +.. ..+.+ .+.||++++|.+++...+
T Consensus 214 ~~~~~~~--~~~~i-~~~~P~L~~w~~ri~~rp 243 (265)
T PLN02817 214 EIALGHY--KNWSV-PDSLPFVKSYMKNIFSME 243 (265)
T ss_pred HHHHHHh--cCCCc-cccCHHHHHHHHHHhcch
Confidence 542 211 11111 356999999999765544
No 21
>KOG0868|consensus
Probab=99.82 E-value=5.2e-20 Score=145.40 Aligned_cols=99 Identities=30% Similarity=0.357 Sum_probs=91.1
Q ss_pred CCceeeeccCCCchHHHHHHHHHhCCCCceEEEccCC----CCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHHhc
Q psy13369 210 EGKIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN----EKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDEKY 285 (311)
Q Consensus 210 ~~~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~----~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 285 (311)
+.++.||.+-.|.|++|||++|..|||+|+.++|++- +...+|.+.||+++||+|++||.+|+||.||++||++.+
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~ 82 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETY 82 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcC
Confidence 4578999988899999999999999999999999977 345689999999999999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHh
Q psy13369 286 EGNRKLIASSPLQRALDRIFLETF 309 (311)
Q Consensus 286 ~~~~~l~~~~~~~~a~~~~~~~~~ 309 (311)
|++ .|+|+++..||.++.....+
T Consensus 83 P~p-pLLP~d~~KRA~~r~i~~~i 105 (217)
T KOG0868|consen 83 PDP-PLLPKDPHKRAKARAISLLI 105 (217)
T ss_pred CCC-CCCCcCHHHHHHHHHHHHHH
Confidence 999 99999999999999877654
No 22
>PRK15113 glutathione S-transferase; Provisional
Probab=99.81 E-value=1.8e-19 Score=154.10 Aligned_cols=100 Identities=25% Similarity=0.368 Sum_probs=91.2
Q ss_pred CCceeeeccC--CCchHHHHHHHHHhCCCCceEEEccCCC---CchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHHh
Q psy13369 210 EGKIRVYSMR--FCPYAQRVHLILLAKKIPHDPVFINLNE---KPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDEK 284 (311)
Q Consensus 210 ~~~~~Ly~~~--~~~~~~~~r~~L~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 284 (311)
..+++||+.+ .|++|++++++|.++|++|+.+.+++.. ..++|+++||.|+||+|+++|.+|+||.||++||+++
T Consensus 3 ~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~~ 82 (214)
T PRK15113 3 KPAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEER 82 (214)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHHHH
Confidence 3457999975 6999999999999999999999999763 5688999999999999999999999999999999999
Q ss_pred cCCCCC---CCCCCHHHHHHHHHHHHHhc
Q psy13369 285 YEGNRK---LIASSPLQRALDRIFLETFG 310 (311)
Q Consensus 285 ~~~~~~---l~~~~~~~~a~~~~~~~~~~ 310 (311)
++.+ . ++|.++.++++++.|+.|++
T Consensus 83 ~~~~-~~~~l~p~~~~~ra~~~~~~~~~~ 110 (214)
T PRK15113 83 FAPP-AWERIYPADLQARARARQIQAWLR 110 (214)
T ss_pred cCCC-CccccCCCCHHHHHHHHHHHHHHH
Confidence 9876 5 99999999999999998874
No 23
>KOG0406|consensus
Probab=99.81 E-value=2.4e-19 Score=150.51 Aligned_cols=99 Identities=36% Similarity=0.636 Sum_probs=94.8
Q ss_pred CceeeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhC-CCCcccEEEeCCeeecCHHHHHHHHHHhcCC-C
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSV-PTGKVPALKSEGSILYESLIISDYLDEKYEG-N 288 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~-p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~-~ 288 (311)
..+.||+...|||++|++++|++|||+|+.+..++.++++++++.| +.++||||+++|..++||..|++||++.+++ +
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~ 87 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGP 87 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCC
Confidence 5689999999999999999999999999999999999999999999 6799999999999999999999999999994 5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc
Q psy13369 289 RKLIASSPLQRALDRIFLETFG 310 (311)
Q Consensus 289 ~~l~~~~~~~~a~~~~~~~~~~ 310 (311)
+++|+||.+||+.+.|+++++
T Consensus 88 -~iLP~DPy~Ra~arfwa~~id 108 (231)
T KOG0406|consen 88 -PILPSDPYERAQARFWAEYID 108 (231)
T ss_pred -CCCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999987
No 24
>PLN02473 glutathione S-transferase
Probab=99.76 E-value=4.6e-18 Score=145.35 Aligned_cols=99 Identities=27% Similarity=0.405 Sum_probs=89.8
Q ss_pred ceeeeccCCCchHHHHHHHHHhCCCCceEEEccCC---CCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHHhcCCC
Q psy13369 212 KIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN---EKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDEKYEGN 288 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~~ 288 (311)
.++||+.+.|++|+|++++|.++|++|+.+.++.. +..++++++||.|+||+|+++|..|+||.||++||+++++.+
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~ 81 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYADQ 81 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcCCc
Confidence 47999999999999999999999999999998876 567889999999999999999999999999999999999743
Q ss_pred C-CCCCCCHHHHHHHHHHHHHhc
Q psy13369 289 R-KLIASSPLQRALDRIFLETFG 310 (311)
Q Consensus 289 ~-~l~~~~~~~~a~~~~~~~~~~ 310 (311)
+ .|+|.++.++++++.|+.+++
T Consensus 82 ~~~l~p~~~~~ra~~~~~~~~~~ 104 (214)
T PLN02473 82 GTDLLGKTLEHRAIVDQWVEVEN 104 (214)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH
Confidence 2 589999999999999987764
No 25
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.75 E-value=4.4e-18 Score=120.75 Aligned_cols=74 Identities=38% Similarity=0.644 Sum_probs=71.2
Q ss_pred eeccCCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHHhcCCC
Q psy13369 215 VYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDEKYEGN 288 (311)
Q Consensus 215 Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~~ 288 (311)
||+++.||+|+|+|++|.++|++|+.+.++..++.+++.+.||.++||+|++||..++||.+|++||+++++++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 79999999999999999999999999999988888999999999999999999999999999999999999865
No 26
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.1e-17 Score=142.79 Aligned_cols=97 Identities=36% Similarity=0.608 Sum_probs=87.9
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCC--CCchhHHhhCCCCcccEEEeCCe-eecCHHHHHHHHHHhcCCCC
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN--EKPEWYVSSVPTGKVPALKSEGS-ILYESLIISDYLDEKYEGNR 289 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~--~~~~~~~~~~p~~~vP~l~~~~~-~l~es~aI~~yL~~~~~~~~ 289 (311)
++||+.+.||+|+|++++|.++|++|+.+.|+.. +..++|+.+||.|+||+|++++. +|+||.||++||+++++.+
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~- 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGP- 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCC-
Confidence 4799999999999999999999999999999998 57889999999999999996654 9999999999999999987
Q ss_pred CCCCCCHH---HHHHHHHHHHHhc
Q psy13369 290 KLIASSPL---QRALDRIFLETFG 310 (311)
Q Consensus 290 ~l~~~~~~---~~a~~~~~~~~~~ 310 (311)
.|+|.++. +|+.+..|+.+++
T Consensus 80 ~l~p~~~~~r~~r~~~~~~~~~~~ 103 (211)
T COG0625 80 PLLPADPLARRARALLLWWLFFAA 103 (211)
T ss_pred CcCCCCchhHHHHHHHHHHHHHHH
Confidence 49998874 8888889988764
No 27
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.73 E-value=2.8e-17 Score=140.60 Aligned_cols=94 Identities=23% Similarity=0.295 Sum_probs=83.5
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCCC---CchhHHhhCCCCcccEEEe-----CC--eeecCHHHHHHHHH
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNE---KPEWYVSSVPTGKVPALKS-----EG--SILYESLIISDYLD 282 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~vP~l~~-----~~--~~l~es~aI~~yL~ 282 (311)
++||+.+ +++|++|+++|+++|++|+.+.+++.. +.++|+++||.|+||+|++ +| .+|+||.||++||+
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL~ 80 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLA 80 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHHH
Confidence 6899886 799999999999999999999998763 4678999999999999996 45 47999999999999
Q ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhc
Q psy13369 283 EKYEGNRKLIASSPLQRALDRIFLETFG 310 (311)
Q Consensus 283 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~ 310 (311)
++++ .+.|.++.++++++.|+.|++
T Consensus 81 ~~~~---~l~p~~~~~ra~~~~~~~~~~ 105 (215)
T PRK13972 81 EKTG---LFLSHETRERAATLQWLFWQV 105 (215)
T ss_pred HhcC---CCCCCCHHHHHHHHHHHHHHh
Confidence 9985 477888999999999998864
No 28
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.73 E-value=2.8e-17 Score=139.17 Aligned_cols=97 Identities=23% Similarity=0.332 Sum_probs=88.3
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEE-eCCeeecCHHHHHHHHHHhcCCCCCC
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALK-SEGSILYESLIISDYLDEKYEGNRKL 291 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~aI~~yL~~~~~~~~~l 291 (311)
++||+...|+++++++++|+++|++|+.+.++......++.+.||.|+||+|+ ++|.+|+||.||++||+++++++ .|
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~-~l 79 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAP-AM 79 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCC-CC
Confidence 47999999999999999999999999999998877777788899999999999 78899999999999999998776 79
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q psy13369 292 IASSPLQRALDRIFLETFG 310 (311)
Q Consensus 292 ~~~~~~~~a~~~~~~~~~~ 310 (311)
+|.++.++++++.|..|++
T Consensus 80 ~p~~~~~~a~~~~~~~~~~ 98 (202)
T PRK10357 80 LPRDPLAALRVRQLEALAD 98 (202)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999977653
No 29
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.72 E-value=2.9e-17 Score=115.81 Aligned_cols=73 Identities=33% Similarity=0.541 Sum_probs=69.2
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHHhc
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDEKY 285 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 285 (311)
++||+.+.||+|++++++|+++|++|+.+.++..+..+++++.||.|+||+|+++|..++||.||++||++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5799999999999999999999999999999988888899999999999999999999999999999999874
No 30
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.72 E-value=2.1e-17 Score=116.42 Aligned_cols=70 Identities=26% Similarity=0.484 Sum_probs=65.3
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCC---CCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHH
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN---EKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLD 282 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 282 (311)
.+||+++.|++|+++|++|+++|++|+.+.++.. ++.++|+++||.|+||+|+++|..++||.||++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4799999999999999999999999999999874 567789999999999999999999999999999985
No 31
>PLN02395 glutathione S-transferase
Probab=99.71 E-value=6.4e-17 Score=138.34 Aligned_cols=98 Identities=24% Similarity=0.396 Sum_probs=86.9
Q ss_pred ceeeeccCCCchHHHHHHHHHhCCCCceEEEccCC---CCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHHhcCCC
Q psy13369 212 KIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN---EKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDEKYEGN 288 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~~ 288 (311)
.++||+.+. ++++|++++|.++|++|+.+.++.. +..++|++.||.|+||+|+++|.+|+||.||++||+++++..
T Consensus 2 ~~~ly~~~~-~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~ 80 (215)
T PLN02395 2 VLKVYGPAF-ASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYRSQ 80 (215)
T ss_pred eEEEEcCCc-CcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHcCCC
Confidence 479999654 5799999999999999999999875 567889999999999999999999999999999999998753
Q ss_pred C-CCCCCCHHHHHHHHHHHHHhc
Q psy13369 289 R-KLIASSPLQRALDRIFLETFG 310 (311)
Q Consensus 289 ~-~l~~~~~~~~a~~~~~~~~~~ 310 (311)
. .|+|.++.++++++.|+.|++
T Consensus 81 ~~~l~p~~~~~~~~~~~~~~~~~ 103 (215)
T PLN02395 81 GPDLLGKTIEERGQVEQWLDVEA 103 (215)
T ss_pred CcCcCCCChhHHHHHHHHHHHHH
Confidence 1 599999999999999988753
No 32
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.71 E-value=5.9e-17 Score=138.02 Aligned_cols=96 Identities=30% Similarity=0.477 Sum_probs=87.8
Q ss_pred eeeccCCCchHHHHHHHHHhCCCCceEEEccCC----CCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHHhcCCCC
Q psy13369 214 RVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN----EKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDEKYEGNR 289 (311)
Q Consensus 214 ~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~----~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~~~ 289 (311)
+||+...|++|+++|++|.++|++|+.+.+++. +..++++++||+|+||+|+++|..|+||.||++||+++++.+
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~- 79 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDP- 79 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCC-
Confidence 488888899999999999999999999999863 346789999999999999999999999999999999999877
Q ss_pred CCCCCCHHHHHHHHHHHHHhc
Q psy13369 290 KLIASSPLQRALDRIFLETFG 310 (311)
Q Consensus 290 ~l~~~~~~~~a~~~~~~~~~~ 310 (311)
.++|.++.++++++.|+.+++
T Consensus 80 ~l~p~~~~~~a~~~~~~~~~~ 100 (210)
T TIGR01262 80 PLLPADPIKRARVRALALLIA 100 (210)
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 799999999999999988764
No 33
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.71 E-value=4.7e-17 Score=118.27 Aligned_cols=70 Identities=23% Similarity=0.416 Sum_probs=66.9
Q ss_pred CCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHHhcCCC
Q psy13369 219 RFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDEKYEGN 288 (311)
Q Consensus 219 ~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~~ 288 (311)
..||+|+++|++|++||++|+.+.+++.+++++|+++||.|+||+|+++|.+++||.+|++||++.++++
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHHccCC
Confidence 5699999999999999999999999999999999999999999999999999999999999999998765
No 34
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.70 E-value=1.1e-16 Score=113.26 Aligned_cols=73 Identities=33% Similarity=0.560 Sum_probs=68.2
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCC-CcccEEEeCCeeecCHHHHHHHHHHhc
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPT-GKVPALKSEGSILYESLIISDYLDEKY 285 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~~~ 285 (311)
++||+++.||+|+++|++|+++|++|+.+.++..++.+++++.||. |++|+|+++|..++||.||++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 4799999999999999999999999999999988888899999995 999999998999999999999999863
No 35
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.69 E-value=9.5e-17 Score=114.44 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=66.1
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCCC-CchhHHhhCCCCcccEEEe--CCeeecCHHHHHHHHHHhc
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNE-KPEWYVSSVPTGKVPALKS--EGSILYESLIISDYLDEKY 285 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~~~ 285 (311)
++||+++.||+|+|++++|.++|++|+.+.++... ..+++++.||.|+||+|++ +|..++||.+|++||++++
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 68999999999999999999999999999987653 4678999999999999995 4689999999999999874
No 36
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.69 E-value=1.1e-16 Score=112.23 Aligned_cols=69 Identities=35% Similarity=0.559 Sum_probs=65.0
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEEe-CCeeecCHHHHHHHH
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALKS-EGSILYESLIISDYL 281 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~-~~~~l~es~aI~~yL 281 (311)
++||+++.||+|+|++++|+++|++|+.+.+++.++.++|++.||.|+||+|++ ||..++||.+|++|+
T Consensus 1 ~~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 1 PILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred CEEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 379999999999999999999999999999999887889999999999999996 599999999999996
No 37
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.69 E-value=1e-16 Score=113.26 Aligned_cols=71 Identities=28% Similarity=0.303 Sum_probs=65.8
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCC---CCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHH
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN---EKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDE 283 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 283 (311)
++||+++.|++|++++++|+++|++|+.+.+++. +..+++++.||.|+||+|+++|..++||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 5799999999999999999999999999999865 3568899999999999999999999999999999974
No 38
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.69 E-value=1.1e-16 Score=135.48 Aligned_cols=96 Identities=22% Similarity=0.378 Sum_probs=84.2
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCCC----CchhHHhhCCCCcccEEE-eCCeeecCHHHHHHHHHHhcCC
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNE----KPEWYVSSVPTGKVPALK-SEGSILYESLIISDYLDEKYEG 287 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~----~~~~~~~~~p~~~vP~l~-~~~~~l~es~aI~~yL~~~~~~ 287 (311)
++||+.+.+ ++++++++|+++|++|+.+.|++.. ..++|+++||.|+||+|+ ++|.+|+||.||++||+++++.
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcc
Confidence 478998755 7999999999999999999998863 457899999999999998 6889999999999999999987
Q ss_pred CCCCC-CCCHHHHHHHHHHHHHhc
Q psy13369 288 NRKLI-ASSPLQRALDRIFLETFG 310 (311)
Q Consensus 288 ~~~l~-~~~~~~~a~~~~~~~~~~ 310 (311)
+ .++ |.++.++++++.|+.|++
T Consensus 80 ~-~l~~p~~~~~ra~~~~~~~~~~ 102 (201)
T PRK10542 80 R-QLLAPVGSLSRYHTIEWLNYIA 102 (201)
T ss_pred c-ccCCCCCcHHHHHHHHHHHHHH
Confidence 7 555 667889999999988763
No 39
>PRK11752 putative S-transferase; Provisional
Probab=99.68 E-value=3e-16 Score=138.27 Aligned_cols=110 Identities=24% Similarity=0.298 Sum_probs=91.6
Q ss_pred hhhccCCCCCCC-------CCCceeeeccCCCchHHHHHHHHHhC------CCCceEEEccCC---CCchhHHhhCCCCc
Q psy13369 197 FAQLVSSQDPPT-------QEGKIRVYSMRFCPYAQRVHLILLAK------KIPHDPVFINLN---EKPEWYVSSVPTGK 260 (311)
Q Consensus 197 ~p~l~~w~~~~~-------~~~~~~Ly~~~~~~~~~~~r~~L~~~------gi~~~~~~v~~~---~~~~~~~~~~p~~~ 260 (311)
|.++++=+.... ....++||+.+ |++|++|+++|+++ |++|+.+.|++. +..++|+++||.|+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~Gk 100 (264)
T PRK11752 22 FANINRPVAGATHEKTLPVGKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSK 100 (264)
T ss_pred ccccCCCCCCcchhcccCCCCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCC
Confidence 556655555432 22378999975 99999999999997 899999999875 35789999999999
Q ss_pred ccEEEeC----CeeecCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhc
Q psy13369 261 VPALKSE----GSILYESLIISDYLDEKYEGNRKLIASSPLQRALDRIFLETFG 310 (311)
Q Consensus 261 vP~l~~~----~~~l~es~aI~~yL~~~~~~~~~l~~~~~~~~a~~~~~~~~~~ 310 (311)
||+|+++ +.+|+||.||++||+++++ .|+|.++.++++++.|+.|++
T Consensus 101 VP~Lv~~dg~~~~~L~ES~AIl~YL~~~~~---~L~P~~~~era~v~~wl~~~~ 151 (264)
T PRK11752 101 IPALLDRSGNPPIRVFESGAILLYLAEKFG---AFLPKDLAARTETLNWLFWQQ 151 (264)
T ss_pred CCEEEeCCCCCCeEEEcHHHHHHHHHHhcC---CcCCCCHHHHHHHHHHHHHHh
Confidence 9999954 3689999999999999986 589999999999999998864
No 40
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.68 E-value=2.4e-16 Score=112.06 Aligned_cols=72 Identities=31% Similarity=0.463 Sum_probs=66.8
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCC---CCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHHh
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN---EKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDEK 284 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 284 (311)
++||+.+.|++|+++|++|+++|++|+.+.++.. ++.++|.+.||.|++|+|+++|..++||.||++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 6899999999999999999999999999998875 45678999999999999999999999999999999864
No 41
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.67 E-value=1.6e-16 Score=111.99 Aligned_cols=72 Identities=19% Similarity=0.191 Sum_probs=66.7
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHHh
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDEK 284 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 284 (311)
++||+++.|++|+++|++|.++|++|+.+.++..+..+++++.||.|+||+|+++|..++||.||++||+++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 689999999999999999999999999999987655667899999999999999999999999999999863
No 42
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.67 E-value=4e-16 Score=110.90 Aligned_cols=73 Identities=29% Similarity=0.407 Sum_probs=67.0
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCCC---CchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHHhc
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNE---KPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDEKY 285 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 285 (311)
++||+++.|++|++++++|+++|++|+.+.++..+ ..+++.+.||.|+||+|+++|..++||.||++||++++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 47999999999999999999999999999998753 45689999999999999999999999999999999875
No 43
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.67 E-value=4.8e-16 Score=113.98 Aligned_cols=78 Identities=59% Similarity=1.155 Sum_probs=70.3
Q ss_pred CCCCCCCceeeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEEeC-CeeecCHHHHHHHHH
Q psy13369 205 DPPTQEGKIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALKSE-GSILYESLIISDYLD 282 (311)
Q Consensus 205 ~~~~~~~~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~-~~~l~es~aI~~yL~ 282 (311)
+.+.....++||+.+.||+|++++++|.++|++|+.+.++..+..+++.+.||.++||+|+.+ |..++||.||++||+
T Consensus 11 ~~~~~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 11 EPPPVPGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred CCCCCCCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence 334455678999999999999999999999999999999988777789999999999999965 899999999999985
No 44
>KOG0867|consensus
Probab=99.66 E-value=7.4e-16 Score=132.47 Aligned_cols=100 Identities=29% Similarity=0.340 Sum_probs=91.0
Q ss_pred CceeeeccCCCchHHHHHHHHHhCCCCceEEEccCC---CCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHHhcC-
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN---EKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDEKYE- 286 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~- 286 (311)
++++||+.+.++.|+++.+++.++|++++.+.++.. +..++|+++||.|+||+|+++|..++||.||+.||+++|+
T Consensus 1 ~~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~ 80 (226)
T KOG0867|consen 1 MKLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYGP 80 (226)
T ss_pred CCceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcCC
Confidence 357899999999999999999999999999987766 7899999999999999999999999999999999999997
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhc
Q psy13369 287 GNRKLIASSPLQRALDRIFLETFG 310 (311)
Q Consensus 287 ~~~~l~~~~~~~~a~~~~~~~~~~ 310 (311)
..+.++|.++.+++.|++|+.|-+
T Consensus 81 ~~~~l~p~~~~~ra~v~~~l~~~~ 104 (226)
T KOG0867|consen 81 LGGILLPKDLKERAIVDQWLEFEN 104 (226)
T ss_pred CCcccCCcCHHHHHHHHHHHHhhh
Confidence 221499999999999999998754
No 45
>PLN02907 glutamate-tRNA ligase
Probab=99.66 E-value=5.2e-16 Score=152.25 Aligned_cols=153 Identities=18% Similarity=0.127 Sum_probs=117.8
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEeecccccccCCCCCCceec-cCCceeec-hhHhhHhhhhhccCCCCCCCCCc
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIHVPVTQYRLIGSIFPTWLT-TESETHWN-RTCSSYFEQKKRREREMKRSQDP 99 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~~~~v~~~~~~~p~~l~-~~g~~l~E-~~I~~YL~~~~~~~~~~l~p~~~ 99 (311)
++||+.+.|+ +.++.++|++.|++|+.+ ..++.+ +.|.|+ +||.+|+| .+|++||++.++ ++ .|+|.++
T Consensus 3 ~kLy~~~~S~-~~~v~~~L~~lgv~~e~~----~~~p~G--kVPvLv~ddG~~L~ES~AIl~YLa~~~p-~~-~L~p~d~ 73 (722)
T PLN02907 3 AKLSFPPDSP-PLAVIAAAKVAGVPLTID----PSLKSG--SAPTLLFSSGEKLTGTNVLLRYIARSAS-LP-GFYGQDA 73 (722)
T ss_pred EEEEECCCCC-hHHHHHHHHHcCCCcEEe----ecCCCC--CCcEEEECCCCEEECHHHHHHHHHHhCC-Cc-CCCCCCH
Confidence 7899998765 778999999999999998 666666 555665 68899999 999999999997 55 6999887
Q ss_pred hhHHHhHhHHHHhhchhhhchhHHHHhhhcCCCCCcccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHh
Q psy13369 100 PTQEGKLRVYSMRFCPYAQRLSPAFYKCMMGEGINPSTFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERL 179 (311)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~ 179 (311)
.+ ++++++|+.+..... . ...+...++.||++|+.+ +||+|+++|+|||++++.+...
T Consensus 74 ~e-rAqV~qWL~~~~~~~----~---------------~~~l~~~L~~LE~~L~~r--tYLvGd~lTLADIaL~~~L~~~ 131 (722)
T PLN02907 74 FE-SSQVDEWLDYAPTFS----S---------------GSEFENACEYVDGYLASR--TFLVGYSLTIADIAIWSGLAGS 131 (722)
T ss_pred HH-HHHHHHHHHHHhhcc----c---------------HHHHHHHHHHHHHHhccC--CeecCCCCCHHHHHHHHHHHhh
Confidence 77 999999998764311 0 124667899999999654 7999999999999999887544
Q ss_pred H-hhhhhcCCCccCChhhhhhccCCCCCCCCCC
Q psy13369 180 P-SLAELAGPEYALPADKFAQLVSSQDPPTQEG 211 (311)
Q Consensus 180 ~-~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~ 211 (311)
. ... . . ...+.||+|.+|.+.+...+
T Consensus 132 ~~~~~---~--~-~~~~~yPnL~RW~erI~arP 158 (722)
T PLN02907 132 GQRWE---S--L-RKSKKYQNLVRWFNSISAEY 158 (722)
T ss_pred hhhhh---c--c-cccccCHHHHHHHHHHHhCC
Confidence 1 111 0 0 12456999999998755443
No 46
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.66 E-value=6.4e-16 Score=111.27 Aligned_cols=73 Identities=26% Similarity=0.458 Sum_probs=66.9
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCC---CCchhHHhhCCCCcccEEEeC---CeeecCHHHHHHHHHHhcC
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN---EKPEWYVSSVPTGKVPALKSE---GSILYESLIISDYLDEKYE 286 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~---~~~l~es~aI~~yL~~~~~ 286 (311)
++||+.+. |+|++++++|+++|++|+.+.+++. +..++|++.||.|+||+|+++ |..|+||.||++||+++++
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~~ 80 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKYD 80 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHhC
Confidence 68999985 9999999999999999999999864 467889999999999999976 8999999999999999986
No 47
>KOG1695|consensus
Probab=99.65 E-value=7.6e-16 Score=128.60 Aligned_cols=180 Identities=15% Similarity=0.155 Sum_probs=129.8
Q ss_pred ceEEEeccCChHHHHHHHHHHhcCCCeEEeecccccccCC-----C-----CCCceeccCCceeec-hhHhhHhhhhhcc
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLAKKIPLTIHVPVTQYRLIG-----S-----IFPTWLTTESETHWN-RTCSSYFEQKKRR 89 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~~~~v~~~~-----~-----~~p~~l~~~g~~l~E-~~I~~YL~~~~~~ 89 (311)
.++|+.+.....+..+|++++..|++||.+ .+.... + ...+.|..||..|.| .+|++||+++|+
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~----r~~~~~~w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~g- 77 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVSFEDK----RITMEDAWEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKFG- 77 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCCccee----eeccccchhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHhC-
Confidence 579999999999999999999999999877 554332 0 134558889999999 999999999995
Q ss_pred CCCCCCCCCchhHHHhHhHHHHhhchhhhchhHHHHh-hhcCCCCCc---ccHhHHHHhHHHHHHHHhhcCCCcccCCCC
Q psy13369 90 EREMKRSQDPPTQEGKLRVYSMRFCPYAQRLSPAFYK-CMMGEGINP---STFGEIVTALEPLEAELKARGTPYLSGSKP 165 (311)
Q Consensus 90 ~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~l~~le~~L~~~~~~~l~G~~~ 165 (311)
+.++++.+ +++++...+.+.+.........+. .-.+..... .........+..+++.|..+++.|++||++
T Consensus 78 ----l~Gkt~~E-~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~l 152 (206)
T KOG1695|consen 78 ----LAGKTEEE-EAWVDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDKL 152 (206)
T ss_pred ----cCCCCHHH-HHHHHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCcc
Confidence 88889888 888877777666543332111111 111111110 345577888999999998776679999999
Q ss_pred chHHHHHHHHHHHhHhh-hhhcCCCccCChhhhhhccCCCCCCCCCCceeeec
Q psy13369 166 GMVDYMIWPWLERLPSL-AELAGPEYALPADKFAQLVSSQDPPTQEGKIRVYS 217 (311)
Q Consensus 166 tlADi~l~~~~~~~~~~-~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~Ly~ 217 (311)
|+||+.++-.+..+... . +-..+.||+++++.++..+.+.++-|-
T Consensus 153 T~aDl~i~e~l~~l~~~~~-------~~~~~~~P~L~a~~~kv~~~p~ik~~i 198 (206)
T KOG1695|consen 153 TWADLVIAEHLDTLEELLD-------PSALDHFPKLKAFKERVSSIPNIKKYL 198 (206)
T ss_pred cHHHHHHHHHHHHHHHhcC-------chhhccChHHHHHHHHHhcCchHHHHH
Confidence 99999999998877763 2 122445677777777666666555443
No 48
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.65 E-value=6.9e-16 Score=108.65 Aligned_cols=70 Identities=27% Similarity=0.456 Sum_probs=65.0
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCC---CCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHH
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN---EKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLD 282 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 282 (311)
++||+++.|++|++++++|.++|++|+.+.++.. ++.++|++.||.|++|+|+++|..++||.||++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999999864 467889999999999999998999999999999984
No 49
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.64 E-value=6.6e-16 Score=109.49 Aligned_cols=70 Identities=23% Similarity=0.343 Sum_probs=65.4
Q ss_pred eeeccCCCchHHHHHHHHHhCCCCceEEEccCC--CCchhHHhhCCCCcccEEEe-CCeeecCHHHHHHHHHH
Q psy13369 214 RVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN--EKPEWYVSSVPTGKVPALKS-EGSILYESLIISDYLDE 283 (311)
Q Consensus 214 ~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~--~~~~~~~~~~p~~~vP~l~~-~~~~l~es~aI~~yL~~ 283 (311)
+||+++.|++|++++++|+++|++|+.+.++.. ++.++|+++||.|++|+|+. +|..|+||.||++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 699999999999999999999999999999976 56789999999999999995 68999999999999986
No 50
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.63 E-value=8.2e-16 Score=108.46 Aligned_cols=70 Identities=29% Similarity=0.585 Sum_probs=64.1
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCC---CCchhHHhhCCCCcccEEE-eCCeeecCHHHHHHHHH
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN---EKPEWYVSSVPTGKVPALK-SEGSILYESLIISDYLD 282 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~-~~~~~l~es~aI~~yL~ 282 (311)
++||+.+.|++|+++|++|.++|++|+.+.++.. +..+++.+.||.+++|+|+ ++|..++||.||++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 4899999999999999999999999999999865 3567899999999999999 68889999999999985
No 51
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.63 E-value=9.9e-16 Score=107.99 Aligned_cols=70 Identities=27% Similarity=0.469 Sum_probs=65.5
Q ss_pred eeeeccCCCchHHHHHHHHHh--CCCCceEEEccCCCCchhHHhhCCCCcccEEE-eCCeeecCHHHHHHHHH
Q psy13369 213 IRVYSMRFCPYAQRVHLILLA--KKIPHDPVFINLNEKPEWYVSSVPTGKVPALK-SEGSILYESLIISDYLD 282 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~--~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~aI~~yL~ 282 (311)
++||+++.|++|+++|++|.+ +|++|+.+.++..++.+++++.||.++||+|+ ++|..++||.||++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 479999999999999999999 89999999999877788999999999999999 68899999999999985
No 52
>PLN02378 glutathione S-transferase DHAR1
Probab=99.63 E-value=2.1e-15 Score=128.82 Aligned_cols=87 Identities=33% Similarity=0.563 Sum_probs=76.7
Q ss_pred ccCCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHHhcCCCCCCCCCCH
Q psy13369 217 SMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDEKYEGNRKLIASSP 296 (311)
Q Consensus 217 ~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~~~~l~~~~~ 296 (311)
+...||+|+|++++|+++|++|+.+.|++.+++++|+++||.|+||+|+++|.+|+||.||++||+++++.+ .+ .++
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~-~l--~~~ 92 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDP-PL--KTP 92 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCC-CC--CCH
Confidence 344599999999999999999999999999888899999999999999999999999999999999999865 45 357
Q ss_pred HHHHHHHHHH
Q psy13369 297 LQRALDRIFL 306 (311)
Q Consensus 297 ~~~a~~~~~~ 306 (311)
.+++.+..++
T Consensus 93 ~~~a~i~~~~ 102 (213)
T PLN02378 93 AEFASVGSNI 102 (213)
T ss_pred HHHHHHHHHH
Confidence 7787776543
No 53
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.62 E-value=1.6e-15 Score=106.87 Aligned_cols=70 Identities=23% Similarity=0.341 Sum_probs=64.4
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCC---CCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHH
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN---EKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLD 282 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 282 (311)
++||+++.|+++++++++|+++|++|+.+.++.. +..++|++.||.|+||+|+++|..|+||.||++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 4799999999999999999999999999988754 456789999999999999999999999999999984
No 54
>KOG1422|consensus
Probab=99.62 E-value=2.7e-15 Score=122.17 Aligned_cols=157 Identities=20% Similarity=0.300 Sum_probs=111.6
Q ss_pred CChHHHHHHHHHHhcCCCeEEeecccccccCCC----------CCCceeccCCceeec-hhHhhHhhhhhccCCCCCCCC
Q psy13369 29 FCPYAQRVHLILLAKKIPLTIHVPVTQYRLIGS----------IFPTWLTTESETHWN-RTCSSYFEQKKRREREMKRSQ 97 (311)
Q Consensus 29 ~sp~~~rv~~~L~~~gi~~e~~~~~~~v~~~~~----------~~p~~l~~~g~~l~E-~~I~~YL~~~~~~~~~~l~p~ 97 (311)
-||||||+.+.|.++|++|.+. .||...+ -+++++..||.+++| ..|.++|+++++ .+ -+|.
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vt----tVd~~~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~-~p--~~~~ 92 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVT----TVDLSRKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLP-PP--KLPT 92 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEE----EeecCCCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcC-CC--CCcc
Confidence 5999999999999999999887 6665541 045557889999999 999999999997 43 3333
Q ss_pred -CchhHHHhHhHHHHhhchhhhchhHHHHhhhcC-CC-CCcccHhHHHHhHHHHHHHHhh-cCCCcccCCCCchHHHHHH
Q psy13369 98 -DPPTQEGKLRVYSMRFCPYAQRLSPAFYKCMMG-EG-INPSTFGEIVTALEPLEAELKA-RGTPYLSGSKPGMVDYMIW 173 (311)
Q Consensus 98 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~le~~L~~-~~~~~l~G~~~tlADi~l~ 173 (311)
++++ .+.+ ...++..|..++.. .+ .+....+.+-..|..||++|+. +.++|+.||++|+||+.+.
T Consensus 93 ~~~~E-~asa----------g~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLl 161 (221)
T KOG1422|consen 93 LAPPE-SASA----------GSDIFAKFSAFIKKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLL 161 (221)
T ss_pred cCCHH-HHhh----------HHHHHHHHHHHHhCchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhc
Confidence 2444 2221 11444455555432 22 3344667888999999999987 5679999999999999999
Q ss_pred HHHHHhHhhhhhcCCCccCChhhhhhccCCCC
Q psy13369 174 PWLERLPSLAELAGPEYALPADKFAQLVSSQD 205 (311)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~ 205 (311)
|-+..+.... .+...|+++.+ .++|.+...
T Consensus 162 PKL~~i~va~-k~yk~~~IP~~-lt~V~rYl~ 191 (221)
T KOG1422|consen 162 PKLHHIKVAA-KHYKNFEIPAS-LTGVWRYLK 191 (221)
T ss_pred hhHHHHHHHH-HHhcCCCCchh-hhHHHHHHH
Confidence 9998876643 12234444443 777777766
No 55
>PRK10387 glutaredoxin 2; Provisional
Probab=99.62 E-value=1.7e-15 Score=128.99 Aligned_cols=92 Identities=23% Similarity=0.439 Sum_probs=76.9
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEE-eCCeeecCHHHHHHHHHHhcCCCCCC
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALK-SEGSILYESLIISDYLDEKYEGNRKL 291 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~aI~~yL~~~~~~~~~l 291 (311)
++||+++.||+|+|++++|+++|++|+.+.++...... ..+.||.|+||+|+ ++|..|+||.||++||+++|+++ +
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~-~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~--~ 77 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEAT-PIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKP--L 77 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhh-HHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCc--c
Confidence 57999999999999999999999999999887653322 36789999999996 88999999999999999999865 4
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy13369 292 IASSPLQRALDRIFLETF 309 (311)
Q Consensus 292 ~~~~~~~~a~~~~~~~~~ 309 (311)
++ + .+++.++.|+.++
T Consensus 78 l~-~-~~~~~~~~~~~~~ 93 (210)
T PRK10387 78 LT-G-KRSPAIEEWLRKV 93 (210)
T ss_pred CC-C-cccHHHHHHHHHH
Confidence 43 2 2577888887765
No 56
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.62 E-value=9.8e-16 Score=107.71 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=64.0
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCCC-CchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHH
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNE-KPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDE 283 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 283 (311)
++||+++.|++|+++|++|+++|++|+.+.++... ...++.+.||.+++|+|+++|..++||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 47999999999999999999999999999998763 234488899999999999999999999999999974
No 57
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.62 E-value=2.4e-15 Score=107.16 Aligned_cols=73 Identities=29% Similarity=0.430 Sum_probs=65.2
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCC---CCchhHHhhCCCCcccEEEeC-CeeecCHHHHHHHHHHhcC
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN---EKPEWYVSSVPTGKVPALKSE-GSILYESLIISDYLDEKYE 286 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~-~~~l~es~aI~~yL~~~~~ 286 (311)
++||+++.| ++++++++|.++|++|+.+.++.. +..++|++.||.|++|+|+.+ |..++||.||++||++++|
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 479998865 689999999999999999999876 357889999999999999965 8999999999999999874
No 58
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.62 E-value=2.7e-15 Score=106.52 Aligned_cols=73 Identities=32% Similarity=0.454 Sum_probs=66.4
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCC---CCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHHhcC
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN---EKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDEKYE 286 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~ 286 (311)
++||+++. ++|++++++|+++|++|+.+.++.. ++.+++++.||.++||+|+++|..++||.||++||+++++
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 47899875 6899999999999999999999874 5678899999999999999999999999999999999874
No 59
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.61 E-value=1.7e-15 Score=107.87 Aligned_cols=73 Identities=29% Similarity=0.405 Sum_probs=63.5
Q ss_pred ceeeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEEeC----CeeecCHHHHHHHHHHhcC
Q psy13369 212 KIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALKSE----GSILYESLIISDYLDEKYE 286 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~----~~~l~es~aI~~yL~~~~~ 286 (311)
+++||+++.||+|++++++|.++|++|+.+.++..... + ++.+|.++||+|+++ |.+++||.+|++||+++.+
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~~-~-~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~~ 77 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSRK-E-IKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYLG 77 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhHH-H-HHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHcC
Confidence 47899999999999999999999999999988765432 2 467999999999954 7899999999999998753
No 60
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.61 E-value=2.2e-15 Score=105.56 Aligned_cols=70 Identities=26% Similarity=0.560 Sum_probs=61.4
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEEeC-CeeecCHHHHHHHHHH
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALKSE-GSILYESLIISDYLDE 283 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~-~~~l~es~aI~~yL~~ 283 (311)
++||++..||+|+|+|++|.++|++|+.+.++.... ...++.+|.++||+|+++ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~-~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDE-ATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCch-HHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 479999999999999999999999999998886533 345678999999999964 8999999999999974
No 61
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.61 E-value=2.9e-15 Score=105.47 Aligned_cols=70 Identities=33% Similarity=0.412 Sum_probs=64.9
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCC---CCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHH
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN---EKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLD 282 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 282 (311)
++||++..|++|+++|++|+++|++|+.+.+++. ++.++|++.||.+++|+|+++|..++||.||++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4799999999999999999999999999999874 456889999999999999999999999999999985
No 62
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.60 E-value=8.2e-15 Score=126.03 Aligned_cols=84 Identities=24% Similarity=0.365 Sum_probs=75.1
Q ss_pred CCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHHhcCCC--CCCCCCCH
Q psy13369 219 RFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDEKYEGN--RKLIASSP 296 (311)
Q Consensus 219 ~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~~--~~l~~~~~ 296 (311)
..||+|++++++|.++|++|+.+.+++.+++++|+++||.|+||||+++|.+|+||.+|++||+++++++ ..+.|.++
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p~~~ 96 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSPKHP 96 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCCCCH
Confidence 5699999999999999999999999999889999999999999999999999999999999999999752 15667777
Q ss_pred HHHHHH
Q psy13369 297 LQRALD 302 (311)
Q Consensus 297 ~~~a~~ 302 (311)
..++..
T Consensus 97 ~~~~~~ 102 (236)
T TIGR00862 97 ESNTAG 102 (236)
T ss_pred HHHHHH
Confidence 666653
No 63
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.60 E-value=3.5e-15 Score=107.57 Aligned_cols=73 Identities=15% Similarity=0.095 Sum_probs=63.0
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCCC----CchhHHhh-----CCCCcccEEEeCCeeecCHHHHHHHHHH
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNE----KPEWYVSS-----VPTGKVPALKSEGSILYESLIISDYLDE 283 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~----~~~~~~~~-----~p~~~vP~l~~~~~~l~es~aI~~yL~~ 283 (311)
++||+++.+++|+++|++|+++|++|+.+.+++.. ..+++.+. +|.|+||+|++||..|+||.||++||++
T Consensus 1 ~~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~ 80 (82)
T cd03075 1 PTLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIAR 80 (82)
T ss_pred CEEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhh
Confidence 37899999999999999999999999999999764 12445432 2999999999999999999999999998
Q ss_pred hc
Q psy13369 284 KY 285 (311)
Q Consensus 284 ~~ 285 (311)
++
T Consensus 81 ~~ 82 (82)
T cd03075 81 KH 82 (82)
T ss_pred cC
Confidence 64
No 64
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.59 E-value=5.3e-15 Score=105.87 Aligned_cols=72 Identities=19% Similarity=0.209 Sum_probs=62.9
Q ss_pred ceeeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhC-----CCCcccEEEeCCeeecCHHHHHHHHHHhcC
Q psy13369 212 KIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSV-----PTGKVPALKSEGSILYESLIISDYLDEKYE 286 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~-----p~~~vP~l~~~~~~l~es~aI~~yL~~~~~ 286 (311)
+++||+++.+++|++++++|+++|++|+.+.++.. +++.+.+ |.|+||+|++||..|+||.||++||+++++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~---~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~~~~ 77 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA---EDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAGKYN 77 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH---HHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHHHcC
Confidence 46899999999999999999999999999998753 3344443 589999999999999999999999999885
No 65
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.58 E-value=6e-15 Score=104.77 Aligned_cols=70 Identities=29% Similarity=0.398 Sum_probs=59.3
Q ss_pred eeeccCCCchHHHHHHHHHhCCCCceEEEccCC---CCchhHHhhCCC-CcccEEEeC-CeeecCHHHHHHHHHH
Q psy13369 214 RVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN---EKPEWYVSSVPT-GKVPALKSE-GSILYESLIISDYLDE 283 (311)
Q Consensus 214 ~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~-~~vP~l~~~-~~~l~es~aI~~yL~~ 283 (311)
+|++++..++|.++|++|+++|++|+.+.+++. ++.++|++.||. |+||+|+++ |..|+||.||++||++
T Consensus 2 ~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 2 TLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 344444455999999999999999999999985 345899999999 999999988 9999999999999985
No 66
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.58 E-value=1.1e-14 Score=123.98 Aligned_cols=91 Identities=22% Similarity=0.361 Sum_probs=74.5
Q ss_pred eeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEE-eCCeeecCHHHHHHHHHHhcCCCCCCC
Q psy13369 214 RVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALK-SEGSILYESLIISDYLDEKYEGNRKLI 292 (311)
Q Consensus 214 ~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~aI~~yL~~~~~~~~~l~ 292 (311)
+||+...||+|+|+|++|.++|++|+.+.+...... ...+.||.|+||+|+ ++|..++||.+|++||+++|+.+ .+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~-~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~-~~~ 78 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEE-TPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEP-LLT 78 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcch-hHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCc-cCC
Confidence 589999999999999999999999999887655332 347899999999999 89999999999999999999765 343
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy13369 293 ASSPLQRALDRIFLETF 309 (311)
Q Consensus 293 ~~~~~~~a~~~~~~~~~ 309 (311)
|. .++++..|+.++
T Consensus 79 ~~---~~~~~~~~~~~~ 92 (209)
T TIGR02182 79 GK---VSPEIEAWLRKV 92 (209)
T ss_pred CC---ChHHHHHHHHHH
Confidence 32 355666776553
No 67
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.57 E-value=7e-15 Score=102.70 Aligned_cols=65 Identities=38% Similarity=0.729 Sum_probs=56.5
Q ss_pred CCchHHHHHHHHHhCCCCceEEEccC----CCCchhHHhhCCCCcccEEEe-CCeeecCHHHHHHHHHHh
Q psy13369 220 FCPYAQRVHLILLAKKIPHDPVFINL----NEKPEWYVSSVPTGKVPALKS-EGSILYESLIISDYLDEK 284 (311)
Q Consensus 220 ~~~~~~~~r~~L~~~gi~~~~~~v~~----~~~~~~~~~~~p~~~vP~l~~-~~~~l~es~aI~~yL~~~ 284 (311)
.||||+|++++|+++|++++...+.. .++.++|.+.||.|+||+|++ +|.+++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 49999999999999999999988843 245689999999999999995 889999999999999974
No 68
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.57 E-value=1.9e-14 Score=126.32 Aligned_cols=85 Identities=35% Similarity=0.620 Sum_probs=77.1
Q ss_pred CCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHHhcCCCCCCCCCCHHH
Q psy13369 219 RFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDEKYEGNRKLIASSPLQ 298 (311)
Q Consensus 219 ~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~~~~l~~~~~~~ 298 (311)
..||+|++++++|.++|++|+.+.+++.+++++|+++||.|+||+|+++|.+|+||.+|++||+++++.+ .+. ++.+
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~-~L~--~~~e 147 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDP-PLA--TPPE 147 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCC-CCC--CHHH
Confidence 3499999999999999999999999999889999999999999999988899999999999999999876 553 5778
Q ss_pred HHHHHHHH
Q psy13369 299 RALDRIFL 306 (311)
Q Consensus 299 ~a~~~~~~ 306 (311)
++.+..|+
T Consensus 148 ra~i~~~l 155 (265)
T PLN02817 148 KASVGSKI 155 (265)
T ss_pred HHHHHHHH
Confidence 88887764
No 69
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.55 E-value=2.1e-14 Score=101.70 Aligned_cols=67 Identities=31% Similarity=0.558 Sum_probs=60.6
Q ss_pred eeeeccC-------CCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHHhc
Q psy13369 213 IRVYSMR-------FCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDEKY 285 (311)
Q Consensus 213 ~~Ly~~~-------~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 285 (311)
++||+++ .||+|+|++++|+++|++|+.+.++. .+.||.|++|+|+++|..++||.+|++||++++
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~-------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL~~~~ 74 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL-------AKRSPKGKLPFIELNGEKIADSELIIDHLEEKY 74 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc-------ccCCCCCCCCEEEECCEEEcCHHHHHHHHHHHc
Confidence 5788887 68999999999999999999988774 368999999999999999999999999999987
Q ss_pred C
Q psy13369 286 E 286 (311)
Q Consensus 286 ~ 286 (311)
+
T Consensus 75 ~ 75 (75)
T cd03080 75 G 75 (75)
T ss_pred C
Confidence 4
No 70
>KOG4420|consensus
Probab=99.55 E-value=2e-14 Score=120.45 Aligned_cols=160 Identities=18% Similarity=0.161 Sum_probs=101.3
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEe-ec----------ccccccCCCCCCceeccCCceeec-hhHhhHhhhhhcc
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIH-VP----------VTQYRLIGSIFPTWLTTESETHWN-RTCSSYFEQKKRR 89 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~-~~----------~~~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~~~~~~ 89 (311)
++||.+++|--|||||++++||||+|+.. +. +-.+|+.+ ..+.+.+|..+|.+ .-|.+|++++|-.
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~g--evPVl~~g~~II~d~tqIIdYvErtf~g 104 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGG--EVPVLIHGDNIISDYTQIIDYVERTFTG 104 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCC--CCceEecCCeecccHHHHHHHHHHhhcc
Confidence 99999999999999999999999999766 11 22344444 44557889999999 7777799999963
Q ss_pred CCCCCCCCCchh--HHHhHh-HHHHh--hch---------hh--hchhHHHH---h-----------hhcCCCCC-cc--
Q psy13369 90 EREMKRSQDPPT--QEGKLR-VYSMR--FCP---------YA--QRLSPAFY---K-----------CMMGEGIN-PS-- 136 (311)
Q Consensus 90 ~~~~l~p~~~~~--~~~~~~-~~~~~--~~~---------~~--~~~~~~~~---~-----------~~~~~~~~-~~-- 136 (311)
+. .|.|+-... .+.... +.++. ++. .. .+..+... . .......+ ++
T Consensus 105 er-~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay 183 (325)
T KOG4420|consen 105 ER-VLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAY 183 (325)
T ss_pred cc-cccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHH
Confidence 44 577754322 122111 11110 000 00 00000000 0 00011011 00
Q ss_pred ----------------------cHhHHHHhHHHHHHHHhhc--CCCcccCCCCchHHHHHHHHHHHhHhhhh
Q psy13369 137 ----------------------TFGEIVTALEPLEAELKAR--GTPYLSGSKPGMVDYMIWPWLERLPSLAE 184 (311)
Q Consensus 137 ----------------------~~~~~~~~l~~le~~L~~~--~~~~l~G~~~tlADi~l~~~~~~~~~~~~ 184 (311)
...++...|..+|..|..+ ..+|++|+.||+||+++.+.+.|+..+|+
T Consensus 184 ~akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~ 255 (325)
T KOG4420|consen 184 LAKQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGL 255 (325)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHccc
Confidence 1256667778888888653 25899999999999999999999998885
No 71
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.54 E-value=2.6e-14 Score=103.59 Aligned_cols=67 Identities=24% Similarity=0.348 Sum_probs=58.9
Q ss_pred CCCchHHHHHHHHHhCCCCceEEEccCCCC---chhHHhhCCCCcccEEEeC-CeeecCHHHHHHHHHHhcC
Q psy13369 219 RFCPYAQRVHLILLAKKIPHDPVFINLNEK---PEWYVSSVPTGKVPALKSE-GSILYESLIISDYLDEKYE 286 (311)
Q Consensus 219 ~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~---~~~~~~~~p~~~vP~l~~~-~~~l~es~aI~~yL~~~~~ 286 (311)
..|++|+|+|++|.++|++|+.+.++..+. ..++ +.||.|+||+|+++ |..++||.+|++||+++++
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 579999999999999999999999886632 2334 78999999999987 8999999999999999874
No 72
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.51 E-value=6.5e-14 Score=98.61 Aligned_cols=66 Identities=30% Similarity=0.569 Sum_probs=60.2
Q ss_pred ccCCCchHHHHHHHHHhCCCCceEEEccCCC--CchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHH
Q psy13369 217 SMRFCPYAQRVHLILLAKKIPHDPVFINLNE--KPEWYVSSVPTGKVPALKSEGSILYESLIISDYLD 282 (311)
Q Consensus 217 ~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~--~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 282 (311)
+...|++|++++++|+++|++|+.+.++..+ ..++|++.||.|++|+|+++|..++||.+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 4567999999999999999999999998763 56789999999999999999999999999999984
No 73
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.48 E-value=1.6e-13 Score=95.06 Aligned_cols=70 Identities=36% Similarity=0.559 Sum_probs=63.3
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCch-hHHhhCCCCcccEEEeCCeeecCHHHHHHHHH
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPE-WYVSSVPTGKVPALKSEGSILYESLIISDYLD 282 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~-~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 282 (311)
++||+++.||+|++++++|.++|++|+.+.++...... ++.+.+|.+++|+|+.+|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 47999999999999999999999999999998764333 48889999999999999999999999999985
No 74
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.47 E-value=4.8e-13 Score=113.57 Aligned_cols=87 Identities=22% Similarity=0.291 Sum_probs=71.0
Q ss_pred CceeeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCchhHH--------hhCCCCcccEEEeCCeeecCHHHHHHHHH
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYV--------SSVPTGKVPALKSEGSILYESLIISDYLD 282 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~--------~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 282 (311)
.+++||+++.+++++++|++|+++|++|+.+.+.. +. ++++ +.||+|+||+|++||.+|+||.||++||+
T Consensus 3 ~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~-~~-~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YLa 80 (205)
T PTZ00057 3 EEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE-NG-DAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYLS 80 (205)
T ss_pred CceEEEecCCCcchHHHHHHHHHcCCCeEEEeccc-cc-hHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence 34899999999999999999999999999997753 22 2343 47999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCHHHHHHHH
Q psy13369 283 EKYEGNRKLIASSPLQRALDR 303 (311)
Q Consensus 283 ~~~~~~~~l~~~~~~~~a~~~ 303 (311)
++++ +.+.+..+++.++
T Consensus 81 ~~~~----~~~~~~~~~~~~~ 97 (205)
T PTZ00057 81 KKYK----ICGESELNEFYAD 97 (205)
T ss_pred HHcC----CCCCCHHHHHHHH
Confidence 9996 3355555554443
No 75
>KOG1695|consensus
Probab=99.45 E-value=6.3e-13 Score=111.14 Aligned_cols=96 Identities=19% Similarity=0.308 Sum_probs=85.6
Q ss_pred CCceeeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHHhcCCCC
Q psy13369 210 EGKIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDEKYEGNR 289 (311)
Q Consensus 210 ~~~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~~~ 289 (311)
|+.++|+|++..+++..+|++++..|++|+.+.+...+.-...+...|.|++|+|..||..|.+|.||++||+++++
T Consensus 1 m~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~g--- 77 (206)
T KOG1695|consen 1 MPPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKFG--- 77 (206)
T ss_pred CCceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHhC---
Confidence 46789999999999999999999999999999999876323345568999999999999999999999999999995
Q ss_pred CCCCCCHHHHHHHHHHHHHh
Q psy13369 290 KLIASSPLQRALDRIFLETF 309 (311)
Q Consensus 290 ~l~~~~~~~~a~~~~~~~~~ 309 (311)
+.|+++.|.+.++...+-+
T Consensus 78 -l~Gkt~~E~a~vD~i~d~~ 96 (206)
T KOG1695|consen 78 -LAGKTEEEEAWVDMIVDQF 96 (206)
T ss_pred -cCCCCHHHHHHHHHHHHhh
Confidence 8899999999999887654
No 76
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.42 E-value=7.1e-13 Score=93.05 Aligned_cols=58 Identities=33% Similarity=0.451 Sum_probs=53.6
Q ss_pred CCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHHh
Q psy13369 220 FCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDEK 284 (311)
Q Consensus 220 ~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 284 (311)
.||+|++++++|.++|++|+.+.++... .+|.|+||+|+++|..++||.+|++||+++
T Consensus 15 ~sp~~~~v~~~L~~~~i~~~~~~~~~~~-------~~p~g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 15 LSPECLKVETYLRMAGIPYEVVFSSNPW-------RSPTGKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CCHHHHHHHHHHHhCCCceEEEecCCcc-------cCCCcccCEEEECCEEEcCHHHHHHHHhhC
Confidence 7999999999999999999999988532 789999999999999999999999999874
No 77
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.37 E-value=7.4e-13 Score=93.75 Aligned_cols=61 Identities=23% Similarity=0.278 Sum_probs=52.3
Q ss_pred EEeccCChHHHHHHHHHHhcCCCeEEeecccccccCCC----------CCCceeccCCceeec-hhHhhHhhhhhc
Q psy13369 24 VYSMRFCPYAQRVHLILLAKKIPLTIHVPVTQYRLIGS----------IFPTWLTTESETHWN-RTCSSYFEQKKR 88 (311)
Q Consensus 24 Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~~~~v~~~~~----------~~p~~l~~~g~~l~E-~~I~~YL~~~~~ 88 (311)
||++.+||||+|||++|.++||+|+.+ .+++..+ .+.+.|++||.+++| .+|++||+++|+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~----~v~~~~~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~ 72 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELV----PVDPEEKRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYP 72 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEE----EEBTTSTSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHST
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEe----ccCcccchhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcC
Confidence 899999999999999999999999888 5543321 155668899999999 999999999997
No 78
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.37 E-value=1.7e-12 Score=95.04 Aligned_cols=75 Identities=35% Similarity=0.577 Sum_probs=60.2
Q ss_pred hhcCCCCCCCCCCceEEEeccCChHHHHHHHHHHhcCCCeEEee-c-------ccccccCCCCCCceeccC-Cceeec-h
Q psy13369 8 EMKRSQDPPTQEGKLRVYSMRFCPYAQRVHLILLAKKIPLTIHV-P-------VTQYRLIGSIFPTWLTTE-SETHWN-R 77 (311)
Q Consensus 8 ~~~~~~~p~~~~~~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~-~-------~~~v~~~~~~~p~~l~~~-g~~l~E-~ 77 (311)
.+|.++.++...+.++||+.+.||||+|++++|.++|++|+.+. + +..+|+.+ +.+.|+++ |.+++| .
T Consensus 5 ~~~~~~~~~~~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~~--~vPvL~~~~g~~l~eS~ 82 (89)
T cd03055 5 LAKGSAEPPPVPGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQG--KVPALEIDEGKVVYESL 82 (89)
T ss_pred cccCCCCCCCCCCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCCC--CcCEEEECCCCEEECHH
Confidence 46788888899999999999999999999999999999998872 0 12233333 34446655 899999 9
Q ss_pred hHhhHhh
Q psy13369 78 TCSSYFE 84 (311)
Q Consensus 78 ~I~~YL~ 84 (311)
+|++||+
T Consensus 83 aI~~yLe 89 (89)
T cd03055 83 IICEYLD 89 (89)
T ss_pred HHHHhhC
Confidence 9999986
No 79
>KOG4420|consensus
Probab=99.36 E-value=8.3e-13 Score=110.77 Aligned_cols=83 Identities=25% Similarity=0.501 Sum_probs=76.9
Q ss_pred CceeeeccCCCchHHHHHHHHHhCCCCceEEEccCC---CCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHHhcCC
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN---EKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDEKYEG 287 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~ 287 (311)
..+.||+++.|-.++|||+++.+|||+|+...|++. +..+||+++||.|.||||++++..|.|++-|++|+++++-+
T Consensus 25 e~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf~g 104 (325)
T KOG4420|consen 25 ESLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTFTG 104 (325)
T ss_pred hcceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhhcc
Confidence 348999999999999999999999999999999988 68999999999999999999999999999999999998866
Q ss_pred CCCCCC
Q psy13369 288 NRKLIA 293 (311)
Q Consensus 288 ~~~l~~ 293 (311)
...|.|
T Consensus 105 er~l~p 110 (325)
T KOG4420|consen 105 ERVLMP 110 (325)
T ss_pred cccccc
Confidence 656766
No 80
>KOG3029|consensus
Probab=99.34 E-value=1.5e-11 Score=104.33 Aligned_cols=160 Identities=19% Similarity=0.255 Sum_probs=99.9
Q ss_pred CceEEEeccCChHHHHHHHHHHhcCCCeEEeecccccccCCC--------CCCceeccCCceeec-hhHhh----Hhh--
Q psy13369 20 GKLRVYSMRFCPYAQRVHLILLAKKIPLTIHVPVTQYRLIGS--------IFPTWLTTESETHWN-RTCSS----YFE-- 84 (311)
Q Consensus 20 ~~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~~~~v~~~~~--------~~p~~l~~~g~~l~E-~~I~~----YL~-- 84 (311)
-.++||.+-.||||.|||.+|.+.||+|+++ +|||..+ +|.|.|..+|..+.| .+|.. ||-
T Consensus 89 L~l~LyQyetCPFCcKVrAFLDyhgisY~VV----EVnpV~r~eIk~SsykKVPil~~~Geqm~dSsvIIs~laTyLq~~ 164 (370)
T KOG3029|consen 89 LDLVLYQYETCPFCCKVRAFLDYHGISYAVV----EVNPVLRQEIKWSSYKKVPILLIRGEQMVDSSVIISLLATYLQDK 164 (370)
T ss_pred ceEEEEeeccCchHHHHHHHHhhcCCceEEE----EecchhhhhccccccccccEEEeccceechhHHHHHHHHHHhccC
Confidence 4799999999999999999999999999999 8888542 456667777888999 55443 431
Q ss_pred --------hhhccCCCCCCC------------------C-Cc---hhHHHhHhHHHHhhchhhhch-hHHHHh-------
Q psy13369 85 --------QKKRREREMKRS------------------Q-DP---PTQEGKLRVYSMRFCPYAQRL-SPAFYK------- 126 (311)
Q Consensus 85 --------~~~~~~~~~l~p------------------~-~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~------- 126 (311)
.-|| .- ..+. + ++ .+.+...+.|-.|.++.+-++ .+..++
T Consensus 165 ~q~l~eiiq~yP-a~-~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~Esle 242 (370)
T KOG3029|consen 165 RQDLGEIIQMYP-AT-SFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLE 242 (370)
T ss_pred CCCHHHHHHhcc-cc-ccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHH
Confidence 1122 00 0000 0 00 011222234444444433111 111111
Q ss_pred ---hhc--C-------------------------------CCCCcccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHH
Q psy13369 127 ---CMM--G-------------------------------EGINPSTFGEIVTALEPLEAELKARGTPYLSGSKPGMVDY 170 (311)
Q Consensus 127 ---~~~--~-------------------------------~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi 170 (311)
.+. + +..-.+.++.+.++.+.+-+.|++ +.+|+.|++|++||+
T Consensus 243 tFewf~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgk-nr~flGG~kPnLaDL 321 (370)
T KOG3029|consen 243 TFEWFSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGK-NRPFLGGKKPNLADL 321 (370)
T ss_pred HHHHHHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCC-CCCccCCCCCchhhh
Confidence 000 0 001112456777888888888864 458999999999999
Q ss_pred HHHHHHHHhHhhhhhc
Q psy13369 171 MIWPWLERLPSLAELA 186 (311)
Q Consensus 171 ~l~~~~~~~~~~~~~~ 186 (311)
++|.++..+..+..++
T Consensus 322 svfGvl~sm~gc~afk 337 (370)
T KOG3029|consen 322 SVFGVLRSMEGCQAFK 337 (370)
T ss_pred hhhhhhhHhhhhhHHH
Confidence 9999999988877443
No 81
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.31 E-value=3.8e-12 Score=89.80 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=52.4
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEee--------cccccccC-CCCCCceeccCCceeec-hhHhhHhhhhh
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIHV--------PVTQYRLI-GSIFPTWLTTESETHWN-RTCSSYFEQKK 87 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~--------~~~~v~~~-~~~~p~~l~~~g~~l~E-~~I~~YL~~~~ 87 (311)
|+||+++.||+|+|++++|+++|++|+.+. .++.+|+. + +.|.|++||.+++| .+|++||+++|
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~--~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHK--KIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCC--CCCEEEECCEEeehHHHHHHHHHhhC
Confidence 689999999999999999999999998862 11234443 3 45668889999999 99999999865
No 82
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.31 E-value=3e-12 Score=90.08 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=50.6
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEee-c----------ccccccCCCCCCceeccCCceeec-hhHhhHhh
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIHV-P----------VTQYRLIGSIFPTWLTTESETHWN-RTCSSYFE 84 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~-~----------~~~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~ 84 (311)
++||+++.||+|+||+++|+++|++|+.+. + +..+||.+ +.|.|++||.+++| .+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g--~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTG--EVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCC--CCCEEEECCEEEEcHHHHHHHhC
Confidence 489999999999999999999999998872 1 22445554 55668899999999 99999995
No 83
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.31 E-value=4.5e-12 Score=89.05 Aligned_cols=64 Identities=19% Similarity=0.286 Sum_probs=52.4
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEee--------cccccccCCCCCCceeccCCceeec-hhHhhHhhhhh
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIHV--------PVTQYRLIGSIFPTWLTTESETHWN-RTCSSYFEQKK 87 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~--------~~~~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~~~~ 87 (311)
|+||+++.||+|+|++++|+++|++|+.+. .++.+|+.+ +.+.+++||..++| .+|++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~--~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPYG--TVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCCC--CCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 689999999999999999999999998862 122344444 44557888999999 99999999875
No 84
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.8e-12 Score=109.81 Aligned_cols=194 Identities=14% Similarity=0.145 Sum_probs=123.5
Q ss_pred hhhhHhhhcCCCCC----CCCCCceEEEeccCChHHHHHHHHHHhcCCCeEEeecccccccCC---C--C---------C
Q psy13369 2 VILREREMKRSQDP----PTQEGKLRVYSMRFCPYAQRVHLILLAKKIPLTIHVPVTQYRLIG---S--I---------F 63 (311)
Q Consensus 2 ~~~~~~~~~~~~~p----~~~~~~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~~~~v~~~~---~--~---------~ 63 (311)
++||+.+..+...+ +...|.+.||.+.-||+++|..++-.+||++--+-+. -+++.. + . .
T Consensus 28 s~fR~~i~~d~~~g~~~f~~e~GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvs--vv~~~m~~~GW~F~~~~~g~t~d 105 (324)
T COG0435 28 SQFRNWITADGPPGTGGFKAEKGRYHLYVSLACPWAHRTLIFRALKGLEPVISVS--VVHPLMDENGWTFDPEFPGATGD 105 (324)
T ss_pred chhhceeecCCCCCcCCcCCCCCeEEEEEEecCchHHHHHHHHHHhcccccceEE--EecccccCCCceEcCCCCCCCCC
Confidence 46777776554443 2567889999999999999999999999988532221 111100 0 0 0
Q ss_pred Cce------------------------ecc--CCcee-ec-hhHhhHhhhhhc---cCCCCCCCCCchhHHHhHhHHHHh
Q psy13369 64 PTW------------------------LTT--ESETH-WN-RTCSSYFEQKKR---REREMKRSQDPPTQEGKLRVYSMR 112 (311)
Q Consensus 64 p~~------------------------l~~--~g~~l-~E-~~I~~YL~~~~~---~~~~~l~p~~~~~~~~~~~~~~~~ 112 (311)
|-+ |.| ...++ .| .-|.+-+...|. .....++|++ .|.+++.+.++
T Consensus 106 pl~g~~~L~~~Y~~adP~YsgRvTVPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~---Lr~eId~~n~~ 182 (324)
T COG0435 106 PLYGIERLSQLYTRADPDYSGRVTVPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEA---LRTEIDELNKW 182 (324)
T ss_pred cccchhHHHHHHhhcCCCCCCceeEEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHH---HHHHHHHHHhh
Confidence 111 222 22233 34 667777777663 1122466655 58888888777
Q ss_pred hchhhhchhHHHHhhhcCC--CCCcccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHhHhhhhhcCCCc
Q psy13369 113 FCPYAQRLSPAFYKCMMGE--GINPSTFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERLPSLAELAGPEY 190 (311)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~ 190 (311)
+-. .+.+..++.-... +.-+++.+.+...|+.||+.|+++ .|++||++|-||+-+|+.+-|++..-..+.++.
T Consensus 183 Iy~---~vNNGVYk~GFA~tq~aYeea~~~lF~~Ld~lE~~L~~~--ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN 257 (324)
T COG0435 183 IYD---TVNNGVYKAGFATTQEAYEEAVKKLFEALDKLEQILSER--RYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCN 257 (324)
T ss_pred hcc---cccCceeeecccchHHHHHHHHHHHHHHHHHHHHHhhcC--eeeccccchHhhhhhhheeEeecceEEeeeecc
Confidence 655 3433333332221 112336678889999999999875 799999999999999999998876443332222
Q ss_pred cCChhhhhhccCCCC
Q psy13369 191 ALPADKFAQLVSSQD 205 (311)
Q Consensus 191 ~~~~~~~p~l~~w~~ 205 (311)
-.-...||+|..|..
T Consensus 258 ~~rI~dypnL~~yLr 272 (324)
T COG0435 258 LRRIRDYPNLWGYLR 272 (324)
T ss_pred cchhhcCchHHHHHH
Confidence 222345999998887
No 85
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.29 E-value=6e-12 Score=89.54 Aligned_cols=64 Identities=11% Similarity=0.130 Sum_probs=50.5
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEeec---------ccccccCCCCCCceecc--CCceeec-hhHhhHhhhhh
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIHVP---------VTQYRLIGSIFPTWLTT--ESETHWN-RTCSSYFEQKK 87 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~---------~~~v~~~~~~~p~~l~~--~g~~l~E-~~I~~YL~~~~ 87 (311)
++||+++.||||+||+++|.++||+|+.+.. +..+|+.+ +.|.|++ +|.+++| .+|++||+++|
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~--~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKV--QVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCC--cccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 7999999999999999999999999988720 11334443 4455654 4789999 99999999875
No 86
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.27 E-value=8.4e-12 Score=97.26 Aligned_cols=105 Identities=38% Similarity=0.714 Sum_probs=77.9
Q ss_pred HHhHhHHHHhhchhhhchhHHHHhhhcCCCCCcccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHhHhh
Q psy13369 103 EGKLRVYSMRFCPYAQRLSPAFYKCMMGEGINPSTFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERLPSL 182 (311)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~~ 182 (311)
|++.|.|+++++..+..+ ++.+..++......+.+.+.|+.+|+.|++.+++|++|+++|+|||++++++.++...
T Consensus 3 ra~~r~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~~~~~~~ 78 (124)
T cd03184 3 KAQQKLLLERFSKVVSAF----YKLLGAPSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWFERLEAL 78 (124)
T ss_pred HHHHHHHHHHHhhhhHHH----HHHHhccccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHHHHHHHH
Confidence 889999999886543333 3333333344457789999999999999764568999999999999999999888766
Q ss_pred hhhcCCCccCChhhhhhccCCCCCCCCCCce
Q psy13369 183 AELAGPEYALPADKFAQLVSSQDPPTQEGKI 213 (311)
Q Consensus 183 ~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~ 213 (311)
+...+ .+.+.+.||++++|.+++...+.+
T Consensus 79 ~~~~~--~~~~~~~~p~l~~w~~r~~~~p~v 107 (124)
T cd03184 79 KLLLG--YEFPLDRFPKLKKWMDAMKEDPAV 107 (124)
T ss_pred Hhhcc--ccCCcccChHHHHHHHHhccChHH
Confidence 53222 123456799999999987766544
No 87
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.26 E-value=9e-12 Score=87.79 Aligned_cols=62 Identities=15% Similarity=0.158 Sum_probs=50.2
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEee-c----------ccccccCCCCCCceeccCCceeec-hhHhhHhhh
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIHV-P----------VTQYRLIGSIFPTWLTTESETHWN-RTCSSYFEQ 85 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~-~----------~~~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~~ 85 (311)
++||+++.||+|+|++++|+++|++|+.+. + +..+|+.+ +.|.|+++|.+++| .+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~--~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQH--TVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCC--CCCEEEECCEEEEcHHHHHHHHhC
Confidence 689999999999999999999999998871 1 12334443 44557888999999 999999975
No 88
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.26 E-value=1.6e-11 Score=86.78 Aligned_cols=65 Identities=15% Similarity=0.244 Sum_probs=54.1
Q ss_pred eEEEecc-------CChHHHHHHHHHHhcCCCeEEee-cccccccCCCCCCceeccCCceeec-hhHhhHhhhhhc
Q psy13369 22 LRVYSMR-------FCPYAQRVHLILLAKKIPLTIHV-PVTQYRLIGSIFPTWLTTESETHWN-RTCSSYFEQKKR 88 (311)
Q Consensus 22 ~~Ly~~~-------~sp~~~rv~~~L~~~gi~~e~~~-~~~~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~~~~~ 88 (311)
++||++. +||||+||+++|.++|++|+.+. .+..+++.+ +.+.+++||.+++| .+|++||+++|+
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~~~~p~g--~vPvl~~~g~~l~eS~~I~~yL~~~~~ 75 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLAKRSPKG--KLPFIELNGEKIADSELIIDHLEEKYG 75 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcccCCCCC--CCCEEEECCEEEcCHHHHHHHHHHHcC
Confidence 6899998 78999999999999999998872 122344444 67788999999999 999999999883
No 89
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.26 E-value=1.1e-11 Score=87.88 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=51.9
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEee-c----------ccccccCCCCCCceeccCCceeec-hhHhhHhhhhh
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIHV-P----------VTQYRLIGSIFPTWLTTESETHWN-RTCSSYFEQKK 87 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~-~----------~~~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~~~~ 87 (311)
++||+++.|++|++++++|+++|++|+.+. + +..+|+.+ +.|.|+++|.+++| .+|++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~--~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFG--KVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCC--CCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 589999999999999999999999998872 0 11334443 44557889999999 99999999875
No 90
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.25 E-value=1.4e-11 Score=87.24 Aligned_cols=64 Identities=19% Similarity=0.236 Sum_probs=51.9
Q ss_pred ceEEEeccCChHHHHHHHHHHhcCCCeEEee-c----------ccccccCCCCCCceeccCCceeec-hhHhhHhhhh
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLAKKIPLTIHV-P----------VTQYRLIGSIFPTWLTTESETHWN-RTCSSYFEQK 86 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~-~----------~~~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~~~ 86 (311)
.++||+++.||+|+|+|++|+++|++|+.+. + +..+||.+ +.+.|+++|.+++| .+|++||+++
T Consensus 1 ~~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~--~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 1 VLKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFG--QIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred CeEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCC--CCCEEEECCEEEEcHHHHHHHHhhC
Confidence 3799999999999999999999999998762 1 22344444 45567889999999 9999999864
No 91
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.24 E-value=1.4e-11 Score=86.15 Aligned_cols=60 Identities=13% Similarity=0.265 Sum_probs=48.1
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEeecccccccCC---------CCCCceeccC-Cceeec-hhHhhHhhh
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIHVPVTQYRLIG---------SIFPTWLTTE-SETHWN-RTCSSYFEQ 85 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~~~~v~~~~---------~~~p~~l~~~-g~~l~E-~~I~~YL~~ 85 (311)
|+||++..||||+|||++|.++|++|+.+ .++... ..+.|.|+++ |.+++| .+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~----~~~~~~~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQI----ILQNDDEATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEE----ECCCCchHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 68999999999999999999999999887 433211 0145557654 899999 999999985
No 92
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.23 E-value=3.2e-11 Score=85.68 Aligned_cols=63 Identities=16% Similarity=0.258 Sum_probs=51.1
Q ss_pred ceEEEeccCChHHHHHHHHHHhcCCCeEEeecccccccCC--------CCCCceecc----CCceeec-hhHhhHhhhhh
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLAKKIPLTIHVPVTQYRLIG--------SIFPTWLTT----ESETHWN-RTCSSYFEQKK 87 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~~~~v~~~~--------~~~p~~l~~----~g~~l~E-~~I~~YL~~~~ 87 (311)
+++||+++.||||+|++++|.++||+|+.+ .+++.. ..+.|.|++ +|.+|+| .+|++||+++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~----~~~~~~~~~~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVV----EVNPVSRKEIKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEE----ECCchhHHHHHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 589999999999999999999999999987 554421 114555664 3889999 99999999865
No 93
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.23 E-value=1.4e-11 Score=89.64 Aligned_cols=60 Identities=17% Similarity=0.357 Sum_probs=49.0
Q ss_pred ccCChHHHHHHHHHHhcCCCeEEee--------cccccccCCCCCCceeccCCceeec-hhHhhHhhhhhc
Q psy13369 27 MRFCPYAQRVHLILLAKKIPLTIHV--------PVTQYRLIGSIFPTWLTTESETHWN-RTCSSYFEQKKR 88 (311)
Q Consensus 27 ~~~sp~~~rv~~~L~~~gi~~e~~~--------~~~~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~~~~~ 88 (311)
...||||||||++|++|||+|+.+. ++..+||.+ +.+.|.++|.+|+| .+|++||+++++
T Consensus 19 ~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g--~vPvL~~~~~~i~eS~~I~eYLde~~~ 87 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGT--QPPFLLYNGEVKTDNNKIEEFLEETLC 87 (91)
T ss_pred CCCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCC--CCCEEEECCEEecCHHHHHHHHHHHcc
Confidence 3579999999999999999999881 122344444 55568899999999 999999999996
No 94
>KOG2903|consensus
Probab=99.21 E-value=8.5e-12 Score=104.80 Aligned_cols=198 Identities=16% Similarity=0.163 Sum_probs=121.3
Q ss_pred hhhhHhhhcCCCCCCCCCCceEEEeccCChHHHHHHHHHHhcCCCeEEeecc-cc-cccCCCCC----------------
Q psy13369 2 VILREREMKRSQDPPTQEGKLRVYSMRFCPYAQRVHLILLAKKIPLTIHVPV-TQ-YRLIGSIF---------------- 63 (311)
Q Consensus 2 ~~~~~~~~~~~~~p~~~~~~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~~-~~-v~~~~~~~---------------- 63 (311)
++||+.++++..-=...+|.+.||...-||+++|..+++.+||++--+-+.+ .+ .+..+...
T Consensus 18 ssfr~~iSkd~~~~~pakgryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~ 97 (319)
T KOG2903|consen 18 SSFRETISKDHPIFKPAKGRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVT 97 (319)
T ss_pred cccccccCCCCCccCCCCceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCC
Confidence 4677777652222123459999999999999999999999999874221100 01 00000000
Q ss_pred Cce--------------------------ecc---CCceeec-hhHhhHhhhhh---cc--C--CCCCCCCCchhHHHhH
Q psy13369 64 PTW--------------------------LTT---ESETHWN-RTCSSYFEQKK---RR--E--REMKRSQDPPTQEGKL 106 (311)
Q Consensus 64 p~~--------------------------l~~---~g~~l~E-~~I~~YL~~~~---~~--~--~~~l~p~~~~~~~~~~ 106 (311)
++- |.| ...|=.| .-|.+.+.+.| -. + .-.|+|.+ .++++
T Consensus 98 ~d~~~g~k~l~elY~~~~p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~---L~~~I 174 (319)
T KOG2903|consen 98 PDPLNGAKRLRELYYIASPNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSS---LRAQI 174 (319)
T ss_pred CcccccchhHHHHHhhcCCCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHH---HHHHH
Confidence 000 111 1112234 56777888333 10 1 11355544 57788
Q ss_pred hHHHHhhchhhhchhHHHHhhhcC--CCCCcccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHhHhhhh
Q psy13369 107 RVYSMRFCPYAQRLSPAFYKCMMG--EGINPSTFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERLPSLAE 184 (311)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~~~~ 184 (311)
+.+.+|+-+ .+....+++-.. .+.-+.....+.+.|+.+|+.|+++-+.|++|+++|.|||.+|+.+-|++..-.
T Consensus 175 de~N~wvy~---~INNGVYk~GFA~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~ 251 (319)
T KOG2903|consen 175 DETNSWVYD---KINNGVYKCGFAEKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYV 251 (319)
T ss_pred hhhhceecc---cccCceeeeccccccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhh
Confidence 777777655 333344443332 122234677889999999999988766799999999999999999988876543
Q ss_pred hcCCCc-cCChhhhhhccCCCC
Q psy13369 185 LAGPEY-ALPADKFAQLVSSQD 205 (311)
Q Consensus 185 ~~~~~~-~~~~~~~p~l~~w~~ 205 (311)
.+.+.. ....+.||+|..|..
T Consensus 252 ~hFKCn~~~ir~~Yp~l~~~lk 273 (319)
T KOG2903|consen 252 QHFKCNKKTIRDEYPNLHNWLK 273 (319)
T ss_pred eeeecchhhhhccCcHHHHHHH
Confidence 322222 134567999999988
No 95
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=3.5e-11 Score=95.60 Aligned_cols=91 Identities=24% Similarity=0.420 Sum_probs=71.9
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEE-eCCeeecCHHHHHHHHHHhcCCCCCC
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALK-SEGSILYESLIISDYLDEKYEGNRKL 291 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~aI~~yL~~~~~~~~~l 291 (311)
++||-+++||||.|+||++..+|||++.+....++... -.+.-+.++||+|+ .||..+.||..|+.|+++..+.+ +
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~T-p~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~--~ 77 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEET-PIRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKP--L 77 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccC-hhhhhcccccceEEccccccchhhhHHHHHHHHhcCch--h
Confidence 47899999999999999999999999999887663211 24567789999999 99999999999999999998865 3
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy13369 292 IASSPLQRALDRIFLET 308 (311)
Q Consensus 292 ~~~~~~~~a~~~~~~~~ 308 (311)
+-. .-+..+..|+.-
T Consensus 78 lt~--~~~pai~~wlrk 92 (215)
T COG2999 78 LTG--KVRPAIEAWLRK 92 (215)
T ss_pred hcc--CcCHHHHHHHHH
Confidence 322 224455556543
No 96
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.18 E-value=1.1e-10 Score=83.31 Aligned_cols=75 Identities=15% Similarity=0.243 Sum_probs=67.1
Q ss_pred CCCCceeeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHH
Q psy13369 208 TQEGKIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLD 282 (311)
Q Consensus 208 ~~~~~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 282 (311)
+...+++||+.++||+|.+++.+|...|++|+.+.++......++...++..++|++..+|..+.++.+|.+||+
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 446679999999999999999999999999999998876555667777888999999999999999999999985
No 97
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.18 E-value=3.9e-11 Score=84.29 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=47.3
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEee-c----------ccccccCCCCCCceec-cCCceeec-hhHhhHhh
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIHV-P----------VTQYRLIGSIFPTWLT-TESETHWN-RTCSSYFE 84 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~-~----------~~~v~~~~~~~p~~l~-~~g~~l~E-~~I~~YL~ 84 (311)
|+||+++.||||+|++++|.++|++|+.+. + +..+|+.+ +.|.++ +||.+++| .+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~--~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAG--TVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCC--CCCEEEeCCCCEEecHHHHHHHhC
Confidence 689999999999999999999999998872 0 11223332 334455 68889999 99999986
No 98
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.18 E-value=5.6e-11 Score=83.29 Aligned_cols=62 Identities=8% Similarity=0.072 Sum_probs=51.8
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEee-c--------ccccccCCCCCCceeccCCceeec-hhHhhHhhh
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIHV-P--------VTQYRLIGSIFPTWLTTESETHWN-RTCSSYFEQ 85 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~-~--------~~~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~~ 85 (311)
++||+++.|++|++||++|+++|++|+.+. + +..+|+.+ +.+.|+++|.+++| .+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~--~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFG--QLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCC--CCCEEEECCEEEEecHHHHHHhhC
Confidence 589999999999999999999999998873 1 23455555 56678899999999 999999974
No 99
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.17 E-value=5.9e-11 Score=83.46 Aligned_cols=64 Identities=13% Similarity=0.051 Sum_probs=53.1
Q ss_pred ceEEEeccCChHHHHHHHHHHhcCCCeEEeec--------ccccccCCCCCCceeccCCceeec-hhHhhHhhhh
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLAKKIPLTIHVP--------VTQYRLIGSIFPTWLTTESETHWN-RTCSSYFEQK 86 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~--------~~~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~~~ 86 (311)
.++||+++.|++|+++|++|.++|++|+.+.. ++.+|+.+ +.+.|++||.+++| .+|++||+++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~~--~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLFG--QLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCCC--CCCEEEECCEEEEcHHHHHHHHhcC
Confidence 47999999999999999999999999987731 23445555 56778999999999 9999999863
No 100
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.16 E-value=5.6e-11 Score=83.55 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=49.6
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEee-----------cccccccCCCCCCceeccCCceeec-hhHhhHhh
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIHV-----------PVTQYRLIGSIFPTWLTTESETHWN-RTCSSYFE 84 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~-----------~~~~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~ 84 (311)
++||+++.||+++||+++|+++|++|+.+. ++..+|+.+ +.+.|++||.+|+| .+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~--~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNG--RVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCC--CCCEEEECCEEEECHHHHHHHhC
Confidence 589999999999999999999999998872 012334444 45568899999999 99999985
No 101
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.16 E-value=6.5e-11 Score=82.77 Aligned_cols=59 Identities=22% Similarity=0.278 Sum_probs=47.1
Q ss_pred EEEeccCChHHHHHHHHHHhcCCCeEEee--------cccccccCCCCCCceecc-CCceeec-hhHhhHh
Q psy13369 23 RVYSMRFCPYAQRVHLILLAKKIPLTIHV--------PVTQYRLIGSIFPTWLTT-ESETHWN-RTCSSYF 83 (311)
Q Consensus 23 ~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~--------~~~~v~~~~~~~p~~l~~-~g~~l~E-~~I~~YL 83 (311)
+||++.+||||+|++++|+++|++|+.+. ++..+|+.+ +.+.|.+ ||..++| .+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~~--~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPKG--TVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCCC--CCCEEEECCCcEEecHHHHHHhh
Confidence 79999999999999999999999998872 122344444 4455665 5999999 9999997
No 102
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.14 E-value=1.7e-10 Score=80.51 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=49.5
Q ss_pred CCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHHh
Q psy13369 220 FCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDEK 284 (311)
Q Consensus 220 ~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 284 (311)
.+++|.|++++|++.|++|+.+.+.. . ...+|.|+||+|++||.+++||.||+.||+++
T Consensus 16 ~~~~~~kv~~~L~elglpye~~~~~~----~--~~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 16 DNASCLAVQTFLKMCNLPFNVRCRAN----A--EFMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCHHHHHHHHHHcCCCcEEEecCC----c--cccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 47889999999999999999884321 1 12567899999999999999999999999864
No 103
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.14 E-value=9.4e-11 Score=84.14 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=50.4
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEee-c----------ccccccCCCCCCceeccC---Cceeec-hhHhhHhhhh
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIHV-P----------VTQYRLIGSIFPTWLTTE---SETHWN-RTCSSYFEQK 86 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~-~----------~~~v~~~~~~~p~~l~~~---g~~l~E-~~I~~YL~~~ 86 (311)
++||+++. |+|+||+++|+++|++|+.+. + +..+|+.+ +.+.|+++ |.+|+| .+|++||+++
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~--~vP~l~~~~~~g~~l~eS~aI~~yL~~~ 78 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNG--RIPAIVDHNGTPLTVFESGAILLYLAEK 78 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCC--CCCEEEeCCCCceEEEcHHHHHHHHHHH
Confidence 79999985 999999999999999998872 0 11233333 44557766 899999 9999999999
Q ss_pred hc
Q psy13369 87 KR 88 (311)
Q Consensus 87 ~~ 88 (311)
|+
T Consensus 79 ~~ 80 (81)
T cd03048 79 YD 80 (81)
T ss_pred hC
Confidence 85
No 104
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.12 E-value=1e-10 Score=81.96 Aligned_cols=61 Identities=15% Similarity=0.173 Sum_probs=48.5
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEee-c----------ccccccCCCCCCceeccCCceeec-hhHhhHhh
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIHV-P----------VTQYRLIGSIFPTWLTTESETHWN-RTCSSYFE 84 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~-~----------~~~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~ 84 (311)
++||+++.||+|+|++++|+++|++|+.+. + +..+|+.+ +.|.++++|.+++| .+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~--~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNG--EVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCC--CCCEEEECCEEEEcHHHHHHHhC
Confidence 589999999999999999999999998871 1 11223333 44557888999999 99999984
No 105
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.12 E-value=1.7e-10 Score=82.44 Aligned_cols=62 Identities=10% Similarity=0.007 Sum_probs=52.4
Q ss_pred ceEEEeccCChHHHHHHHHHHhcCCCeEEeeccccccc--------------CCCCCCceeccCCceeec-hhHhhHhhh
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLAKKIPLTIHVPVTQYRL--------------IGSIFPTWLTTESETHWN-RTCSSYFEQ 85 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~~~~v~~--------------~~~~~p~~l~~~g~~l~E-~~I~~YL~~ 85 (311)
+++||+++.|++|++++++|+++|++|+.+ .++. .+ +.|.|++||.+|+| .+|++||++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~----~v~~~~~~~~~~~~~~~~~g--~vP~L~~~g~~l~ES~AI~~YL~~ 74 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEK----FIESAEDLEKLKKDGSLMFQ--QVPMVEIDGMKLVQTRAILNYIAG 74 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEE----EeccHHHHHhhccccCCCCC--CCCEEEECCEEEeeHHHHHHHHHH
Confidence 468999999999999999999999999887 4432 12 45568889999999 999999999
Q ss_pred hhc
Q psy13369 86 KKR 88 (311)
Q Consensus 86 ~~~ 88 (311)
+|+
T Consensus 75 ~~~ 77 (79)
T cd03077 75 KYN 77 (79)
T ss_pred HcC
Confidence 984
No 106
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.10 E-value=8.2e-11 Score=90.41 Aligned_cols=107 Identities=18% Similarity=0.206 Sum_probs=74.5
Q ss_pred CCchhHHHhHhHHHHhhchhhhchhHH-HHhhhcCCCCCcccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHH
Q psy13369 97 QDPPTQEGKLRVYSMRFCPYAQRLSPA-FYKCMMGEGINPSTFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPW 175 (311)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~ 175 (311)
+||.. ++++++|+.+.+..+.+.... ++.....++........+.+.++.||+.|+++ +|++|+++|+|||+++++
T Consensus 2 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~le~~L~~~--~yl~Gd~~tlADi~l~~~ 78 (115)
T cd03196 2 QDPAA-LKEMLALIAENDNEFKHHLDRYKYADRYPEESEEEYRQQAEAFLKDLEARLQQH--SYLLGDKPSLADWAIFPF 78 (115)
T ss_pred CchHH-HHHHHHHHHHcchhhHHHHHhccchhhcCcccHHHHHHHHHHHHHHHHHHHccC--CccCCCCccHHHHHHHHH
Confidence 35666 999999999988866443322 22222222223336778999999999999753 799999999999999998
Q ss_pred HHHhHhhhhhcCCCccCChhhhhhccCCCCCCCCCC
Q psy13369 176 LERLPSLAELAGPEYALPADKFAQLVSSQDPPTQEG 211 (311)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~ 211 (311)
+.++..... ...+.+.||+|.+|.+++...+
T Consensus 79 l~~~~~~~~-----~~~~~~~~P~L~~w~~r~~~rp 109 (115)
T cd03196 79 VRQFAHVDP-----KWFDQSPYPRLRRWLNGFLASP 109 (115)
T ss_pred HHHHHHhhh-----cccCcccCHHHHHHHHHHHcCh
Confidence 876543310 0123467999999999765443
No 107
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.09 E-value=1.7e-10 Score=80.93 Aligned_cols=61 Identities=15% Similarity=0.099 Sum_probs=48.7
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEee-c----------ccccccCCCCCCceeccCCceeec-hhHhhHhh
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIHV-P----------VTQYRLIGSIFPTWLTTESETHWN-RTCSSYFE 84 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~-~----------~~~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~ 84 (311)
|+||++..|++|+|++++|+++|++|+.+. + +..+++.+ +.|.++++|.+++| .+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~--~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQG--LVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCC--CCCEEEECCEEEEcHHHHHHHhC
Confidence 589999999999999999999999998871 1 11223333 44557888999999 99999985
No 108
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.08 E-value=2.2e-10 Score=80.47 Aligned_cols=61 Identities=13% Similarity=0.266 Sum_probs=47.9
Q ss_pred eEEEeccCChHHHHHHHHHHh--cCCCeEEee--------cccccccCCCCCCceec-cCCceeec-hhHhhHhh
Q psy13369 22 LRVYSMRFCPYAQRVHLILLA--KKIPLTIHV--------PVTQYRLIGSIFPTWLT-TESETHWN-RTCSSYFE 84 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~--~gi~~e~~~--------~~~~v~~~~~~~p~~l~-~~g~~l~E-~~I~~YL~ 84 (311)
++||++..||+|+|+|++|++ +|++|+.+. ++..+++.+ +.+.|+ +||.+++| .+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~--~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLG--KIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCCC--CCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 899998871 012333333 444565 68899999 99999986
No 109
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.07 E-value=1.7e-10 Score=80.37 Aligned_cols=56 Identities=25% Similarity=0.366 Sum_probs=43.1
Q ss_pred CChHHHHHHHHHHhcCCCeEEeec------------ccccccCCCCCCceecc-CCceeec-hhHhhHhhhh
Q psy13369 29 FCPYAQRVHLILLAKKIPLTIHVP------------VTQYRLIGSIFPTWLTT-ESETHWN-RTCSSYFEQK 86 (311)
Q Consensus 29 ~sp~~~rv~~~L~~~gi~~e~~~~------------~~~v~~~~~~~p~~l~~-~g~~l~E-~~I~~YL~~~ 86 (311)
+||||+|++++|+++||+|+.... +..+|+.+ +.|.|++ +|.+++| .+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~--~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRG--KVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT---SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCe--EEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 599999999999999999987631 23445555 5555664 8899999 9999999974
No 110
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.06 E-value=3e-10 Score=80.30 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=49.9
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEee-c----------ccccccCCCCCCceeccCCceeec-hhHhhHhhhhhc
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIHV-P----------VTQYRLIGSIFPTWLTTESETHWN-RTCSSYFEQKKR 88 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~-~----------~~~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~~~~~ 88 (311)
++||+++. ++++|++++|+++|++|+.+. + +..+++.+ +.+.|+++|.+++| .+|++||+++|+
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~--~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLG--KVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCC--CCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 58999885 689999999999999998871 1 11223333 44557889999999 999999999874
No 111
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.06 E-value=2.1e-10 Score=88.42 Aligned_cols=103 Identities=15% Similarity=0.057 Sum_probs=70.5
Q ss_pred CCCchhHHHhHhHHHHhhchhhhchhH-HHHhhhcCCC--------CCc----ccHhHHHHhHHHHHHHHhhcCCCcccC
Q psy13369 96 SQDPPTQEGKLRVYSMRFCPYAQRLSP-AFYKCMMGEG--------INP----STFGEIVTALEPLEAELKARGTPYLSG 162 (311)
Q Consensus 96 p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------~~~----~~~~~~~~~l~~le~~L~~~~~~~l~G 162 (311)
|.++.+ ++++++|+.+....+..... .++.....+. ... .....+.+.|+.||++|++ ++|++|
T Consensus 2 ~~~~~~-ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G 78 (119)
T cd03189 2 PPDTAE-YADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAK--KGYFVG 78 (119)
T ss_pred CCCHHH-HHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHcc--CCCCCC
Confidence 567777 99999999988775543221 1111111110 111 1345789999999999964 479999
Q ss_pred CCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCCCCC
Q psy13369 163 SKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDPPTQ 209 (311)
Q Consensus 163 ~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~ 209 (311)
+++|+|||++++.+.++...+ .+...||++++|.+++..
T Consensus 79 d~~t~ADi~l~~~~~~~~~~~--------~~~~~~p~l~~w~~~~~~ 117 (119)
T cd03189 79 DKLTAADIMMSFPLEAALARG--------PLLEKYPNIAAYLERIEA 117 (119)
T ss_pred CCCCHHHHHHHHHHHHHHHcC--------cccccCchHHHHHHHHhc
Confidence 999999999998887765433 234579999999886543
No 112
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.05 E-value=3.7e-10 Score=81.63 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=45.7
Q ss_pred cCChHHHHHHHHHHhcCCCeEEeecccccc--------------cCCCCCCceeccC-Cceeec-hhHhhHhhhhhc
Q psy13369 28 RFCPYAQRVHLILLAKKIPLTIHVPVTQYR--------------LIGSIFPTWLTTE-SETHWN-RTCSSYFEQKKR 88 (311)
Q Consensus 28 ~~sp~~~rv~~~L~~~gi~~e~~~~~~~v~--------------~~~~~~p~~l~~~-g~~l~E-~~I~~YL~~~~~ 88 (311)
.+||||+|||++|.++||+|+.+ .++ +.+ +.+.|+++ |.+++| .+|++||+++|+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~----~~~~~~~~~~~~~~~~~p~~--~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTV----PVEFPDIPPILGELTSGGFY--TVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEE----EecCCCcccccccccCCCCc--eeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 68999999999999999999887 433 233 44557777 899999 999999999874
No 113
>PLN02907 glutamate-tRNA ligase
Probab=99.04 E-value=1.1e-09 Score=108.08 Aligned_cols=84 Identities=13% Similarity=0.079 Sum_probs=74.9
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEE-eCCeeecCHHHHHHHHHHhcCCCCCC
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALK-SEGSILYESLIISDYLDEKYEGNRKL 291 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~aI~~yL~~~~~~~~~l 291 (311)
++||+.+.+ .+.++.++|++.|++|+.+. .+|.|+||+|+ ++|..|+||.||++||++.++.+ .|
T Consensus 3 ~kLy~~~~S-~~~~v~~~L~~lgv~~e~~~------------~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~-~L 68 (722)
T PLN02907 3 AKLSFPPDS-PPLAVIAAAKVAGVPLTIDP------------SLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLP-GF 68 (722)
T ss_pred EEEEECCCC-ChHHHHHHHHHcCCCcEEee------------cCCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCc-CC
Confidence 689998866 47789999999999999864 26899999999 68899999999999999999877 79
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q psy13369 292 IASSPLQRALDRIFLETFG 310 (311)
Q Consensus 292 ~~~~~~~~a~~~~~~~~~~ 310 (311)
+|.++.++++++.|+.|++
T Consensus 69 ~p~d~~erAqV~qWL~~~~ 87 (722)
T PLN02907 69 YGQDAFESSQVDEWLDYAP 87 (722)
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999874
No 114
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.04 E-value=4.1e-10 Score=79.58 Aligned_cols=61 Identities=8% Similarity=0.057 Sum_probs=47.8
Q ss_pred EEEeccCChHHHHHHHHHHhcCCCeEEee-c---------ccccccCCCCCCceecc-CCceeec-hhHhhHhhh
Q psy13369 23 RVYSMRFCPYAQRVHLILLAKKIPLTIHV-P---------VTQYRLIGSIFPTWLTT-ESETHWN-RTCSSYFEQ 85 (311)
Q Consensus 23 ~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~-~---------~~~v~~~~~~~p~~l~~-~g~~l~E-~~I~~YL~~ 85 (311)
+||+++.||+|+|++++|+++|++|+.+. + ++.+||.+ +.+.|++ ||.+|+| .+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~--~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLG--KVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCC--CCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 79999999999999999999999998871 0 11233333 3444665 6899999 999999986
No 115
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.04 E-value=4.3e-10 Score=79.84 Aligned_cols=64 Identities=13% Similarity=0.110 Sum_probs=48.6
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEee-c----------ccccccCCCCCCceeccC-Cceeec-hhHhhHhhhhhc
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIHV-P----------VTQYRLIGSIFPTWLTTE-SETHWN-RTCSSYFEQKKR 88 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~-~----------~~~v~~~~~~~p~~l~~~-g~~l~E-~~I~~YL~~~~~ 88 (311)
++||+++.| +++||+++|.++|++|+.+. + +..+|+.+ +.+.|+++ |.+++| .+|++||+++||
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~--~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKG--QVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCC--CCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 589999865 69999999999999998871 0 12234433 33446655 899999 999999999884
No 116
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.03 E-value=1.7e-10 Score=92.05 Aligned_cols=107 Identities=15% Similarity=0.113 Sum_probs=71.5
Q ss_pred hHHHhHhHHHHhhchhhhchhHHHHhhhcCC--CCCcccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHH
Q psy13369 101 TQEGKLRVYSMRFCPYAQRLSPAFYKCMMGE--GINPSTFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLER 178 (311)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~ 178 (311)
+.|+++++|+++....+.. .+++..... +........+.+.|+.||+.|++ ++|++|+++|+|||++++++.+
T Consensus 3 ~~~a~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~--~~yl~Gd~~TlADi~l~~~l~~ 77 (142)
T cd03190 3 ELRSEIDELNEWIYDNINN---GVYKAGFATTQEAYDEAVDELFEALDRLEELLSD--RRYLLGDRLTEADIRLFTTLIR 77 (142)
T ss_pred hHHHHHHHHHHHHHHHHhh---HHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHcc--CCeeeCCCccHHHHHHHHHHHH
Confidence 3588899999998874433 333332211 11223567899999999999964 4799999999999999999987
Q ss_pred hHhhhhhcCCCccCChhhhhhccCCCCCCCCCCc
Q psy13369 179 LPSLAELAGPEYALPADKFAQLVSSQDPPTQEGK 212 (311)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~ 212 (311)
+.............+.+.||+|.+|.+++...+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~P~ 111 (142)
T cd03190 78 FDAVYVQHFKCNLKRIRDYPNLWNYLRRLYQNPG 111 (142)
T ss_pred HHHHhhhhcccccchhhhCchHHHHHHHHhcCch
Confidence 6543210000000123579999999997655543
No 117
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.01 E-value=2.4e-10 Score=89.06 Aligned_cols=106 Identities=18% Similarity=0.225 Sum_probs=73.1
Q ss_pred HHhHhHHHHhhchhhhchhHHHHhhhcC-CCCCcccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHhHh
Q psy13369 103 EGKLRVYSMRFCPYAQRLSPAFYKCMMG-EGINPSTFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERLPS 181 (311)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~ 181 (311)
|++.++|++++...+...... .+.. +.........+.+.++.||+.|++ ++|++|+++|+|||++++++.++..
T Consensus 4 ra~~~~w~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~ADi~l~~~~~~~~~ 78 (126)
T cd03185 4 RAVARFWAAFIDDKLFPAGRK---VLAAKGEEREKAKEEALEALKVLEEELGG--KPFFGGDTIGYVDIALGSFLGWFRA 78 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHccchHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCCCcchHHHHHHHHHHHHHH
Confidence 888999999887755332222 2222 112223567889999999999964 4899999999999999999988765
Q ss_pred hhhhcCCCccCChhhhhhccCCCCCCCCCCcee
Q psy13369 182 LAELAGPEYALPADKFAQLVSSQDPPTQEGKIR 214 (311)
Q Consensus 182 ~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~ 214 (311)
.....+.+. .+.+.||++.+|.+.+...+.+.
T Consensus 79 ~~~~~~~~~-~~~~~~p~l~~w~~~~~~~p~~~ 110 (126)
T cd03185 79 YEEVGGVKL-LDEEKTPLLAAWAERFLELEAVK 110 (126)
T ss_pred HHHHcCccc-cCcccCchHHHHHHHHHhccHHH
Confidence 432211111 13466999999999876655443
No 118
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.01 E-value=2.7e-10 Score=88.23 Aligned_cols=100 Identities=13% Similarity=0.203 Sum_probs=69.0
Q ss_pred HHhHhHHHHhhchhhhch-hHHHHhhhcCC-CC-Ccc----cHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHH
Q psy13369 103 EGKLRVYSMRFCPYAQRL-SPAFYKCMMGE-GI-NPS----TFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPW 175 (311)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~-~~~----~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~ 175 (311)
++++++|++++...+.+. ...+....... +. ... ..+.+.+.|+.||++|++++++|++|+++|+|||++++.
T Consensus 4 ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~~~ 83 (121)
T cd03191 4 RARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADICLVPQ 83 (121)
T ss_pred HHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHHHH
Confidence 899999999987666432 22233222211 11 111 335688999999999975444799999999999999999
Q ss_pred HHHhHhhhhhcCCCccCChhhhhhccCCCCCCCCC
Q psy13369 176 LERLPSLAELAGPEYALPADKFAQLVSSQDPPTQE 210 (311)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 210 (311)
+.+....+ ++.+.||+|.+|.+++...
T Consensus 84 ~~~~~~~~--------~~~~~~p~l~~w~~~~~~~ 110 (121)
T cd03191 84 VYNARRFG--------VDLSPYPTIARINEACLEL 110 (121)
T ss_pred HHHHHHhC--------CCcccCcHHHHHHHHHHhC
Confidence 87665443 3346689999999875444
No 119
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.00 E-value=1e-09 Score=76.84 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=49.6
Q ss_pred eEEEecc-------CChHHHHHHHHHHhcCCCeEEeecccccc-----cCCCCCCceeccCCceeec-hhHhhHhhhh
Q psy13369 22 LRVYSMR-------FCPYAQRVHLILLAKKIPLTIHVPVTQYR-----LIGSIFPTWLTTESETHWN-RTCSSYFEQK 86 (311)
Q Consensus 22 ~~Ly~~~-------~sp~~~rv~~~L~~~gi~~e~~~~~~~v~-----~~~~~~p~~l~~~g~~l~E-~~I~~YL~~~ 86 (311)
+.||.++ +||||+|++++|+++||+|+.+ .++ +.+ +.+.++++|.+++| .+|++||+++
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~----~~~~~~~~p~g--~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVV----FSSNPWRSPTG--KLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEE----ecCCcccCCCc--ccCEEEECCEEEcCHHHHHHHHhhC
Confidence 3567666 8999999999999999999988 554 333 66778899999999 9999999874
No 120
>KOG1422|consensus
Probab=99.00 E-value=4.5e-09 Score=86.12 Aligned_cols=70 Identities=33% Similarity=0.627 Sum_probs=67.9
Q ss_pred CCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHHhcCCC
Q psy13369 219 RFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDEKYEGN 288 (311)
Q Consensus 219 ~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~~ 288 (311)
-.||+|+++.|.|.++|++|.++.|++..++++|+++.|.+++|+|..++..++||..|.++|+++++.+
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p 88 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPP 88 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCC
Confidence 4599999999999999999999999999999999999999999999999999999999999999999987
No 121
>PRK10638 glutaredoxin 3; Provisional
Probab=99.00 E-value=1.8e-09 Score=77.89 Aligned_cols=72 Identities=15% Similarity=0.252 Sum_probs=64.6
Q ss_pred CceeeeccCCCchHHHHHHHHHhCCCCceEEEccCCC-CchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHH
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNE-KPEWYVSSVPTGKVPALKSEGSILYESLIISDYLD 282 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 282 (311)
.++++|..+.||+|++++.+|.++|++|+.+.++... ..+++.+.+|.+++|+|+.+|..+.....+..+-.
T Consensus 2 ~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 2 ANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred CcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHH
Confidence 4789999999999999999999999999999998663 56778889999999999999999999988887744
No 122
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=98.99 E-value=6.8e-10 Score=82.37 Aligned_cols=93 Identities=15% Similarity=0.149 Sum_probs=69.8
Q ss_pred hhHhhhhhccCCCCCCCCCchhHHHhHhHHHHhhchhhhchhHHHHhhhcCCCCCcccHhHHHHhHHHHHHHHhhcCCCc
Q psy13369 80 SSYFEQKKRREREMKRSQDPPTQEGKLRVYSMRFCPYAQRLSPAFYKCMMGEGINPSTFGEIVTALEPLEAELKARGTPY 159 (311)
Q Consensus 80 ~~YL~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~ 159 (311)
++||++.- .+.|+++.+ +++++.|+++....+. ....+++.+.++.+|++|+++ +|
T Consensus 1 ~r~~~~~~-----~~~~~~~~~-~~~vd~~~d~~~~~l~----------------~~~~~~~~~~l~~le~~L~~~--~f 56 (96)
T cd03200 1 ARFLYRLL-----GPAPNAPNA-ATNIDSWVDTAIFQLA----------------EGSSKEKAAVLRALNSALGRS--PW 56 (96)
T ss_pred CchHHHHh-----cccCCCchH-HHHHHHHHHHHHHHHh----------------cCCHHHHHHHHHHHHHHHcCC--Cc
Confidence 36888872 488999888 9999999986542111 124567778999999999654 79
Q ss_pred ccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCCC
Q psy13369 160 LSGSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDPP 207 (311)
Q Consensus 160 l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~ 207 (311)
++|+++|+|||++++.+.+. + .+.+.||++.+|.+++
T Consensus 57 l~Gd~~tiADi~l~~~l~~~---~--------~~~~~~p~l~~w~~r~ 93 (96)
T cd03200 57 LVGSEFTVADIVSWCALLQT---G--------LASAAPANVQRWLKSC 93 (96)
T ss_pred cCCCCCCHHHHHHHHHHHHc---c--------cccccChHHHHHHHHH
Confidence 99999999999999887542 1 2235699999998764
No 123
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.99 E-value=2.7e-09 Score=74.70 Aligned_cols=71 Identities=14% Similarity=0.249 Sum_probs=63.0
Q ss_pred ceeeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHH
Q psy13369 212 KIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLD 282 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 282 (311)
++++|..+.||+|.+++.+|...|++|+.+.++......++....+...+|++..+|..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 57999999999999999999999999999998866544455666788899999999999999999999984
No 124
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.98 E-value=2.8e-10 Score=86.09 Aligned_cols=96 Identities=20% Similarity=0.198 Sum_probs=67.4
Q ss_pred HHhHhHHHHhhchhhhchhHHHHhhhcCC-CCCcccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHhHh
Q psy13369 103 EGKLRVYSMRFCPYAQRLSPAFYKCMMGE-GINPSTFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERLPS 181 (311)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~ 181 (311)
|++++.|+++++..+.+.... ...+. .......+.+.+.|..||+.|++ ++|++|+++|+|||++++++.+...
T Consensus 4 ra~~r~w~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aDi~~~~~~~~~~~ 78 (107)
T cd03186 4 RARSRLLMHRIEQDWYPLVDT---IEKGRKKEAEKARKELRESLLALAPVFAH--KPYFMSEEFSLVDCALAPLLWRLPA 78 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhCcHHHHHHHHHHHHHHHHHHHHHHcC--CCcccCCCCcHHHHHHHHHHHHHHH
Confidence 899999999988755443222 22221 11223567899999999999964 4899999999999999999865543
Q ss_pred hhhhcCCCccCChhhhhhccCCCCCCCCC
Q psy13369 182 LAELAGPEYALPADKFAQLVSSQDPPTQE 210 (311)
Q Consensus 182 ~~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 210 (311)
.+. ++ ...+|++++|.+.+...
T Consensus 79 ~~~------~~-~~~~p~l~~w~~~~~~r 100 (107)
T cd03186 79 LGI------EL-PKQAKPLKDYMERVFAR 100 (107)
T ss_pred cCC------CC-cccchHHHHHHHHHHCC
Confidence 331 11 13689999999875444
No 125
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=98.97 E-value=1.1e-09 Score=78.84 Aligned_cols=61 Identities=13% Similarity=0.055 Sum_probs=50.2
Q ss_pred EEEeccCChHHHHHHHHHHhcCCCeEEeecccccccCCC-------------------CCCceeccCCceeec-hhHhhH
Q psy13369 23 RVYSMRFCPYAQRVHLILLAKKIPLTIHVPVTQYRLIGS-------------------IFPTWLTTESETHWN-RTCSSY 82 (311)
Q Consensus 23 ~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~~~~v~~~~~-------------------~~p~~l~~~g~~l~E-~~I~~Y 82 (311)
+||.+..+++|+++|++|+++||+|+.+ .+++..+ .+.|.|++||.+|+| .||++|
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~----~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~Y 77 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEK----RYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRY 77 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEE----EeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHH
Confidence 7899999999999999999999999987 5543210 034557889999999 999999
Q ss_pred hhhhh
Q psy13369 83 FEQKK 87 (311)
Q Consensus 83 L~~~~ 87 (311)
|+++|
T Consensus 78 La~~~ 82 (82)
T cd03075 78 IARKH 82 (82)
T ss_pred HhhcC
Confidence 99865
No 126
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=98.96 E-value=1.7e-10 Score=88.04 Aligned_cols=98 Identities=15% Similarity=0.237 Sum_probs=66.7
Q ss_pred HHhHhHHHHhhchhhhchhHHH-Hhhh-cCCCCC-----cccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHH
Q psy13369 103 EGKLRVYSMRFCPYAQRLSPAF-YKCM-MGEGIN-----PSTFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPW 175 (311)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~-----~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~ 175 (311)
|+++++|+.+.+..+.+....+ .... ..+... ......+.+.++.||+.|+. ++|++|+++|+|||++++.
T Consensus 3 ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~--~~~l~G~~~t~aDi~~~~~ 80 (114)
T cd03188 3 RARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLAG--GPYLLGDRFSVADAYLFVV 80 (114)
T ss_pred HHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhcC--CCeeeCCCcchHHHHHHHH
Confidence 7889999998877553322211 1100 011111 12456788999999999963 4799999999999999999
Q ss_pred HHHhHhhhhhcCCCccCChhhhhhccCCCCCCCCC
Q psy13369 176 LERLPSLAELAGPEYALPADKFAQLVSSQDPPTQE 210 (311)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 210 (311)
+.++...+ .+.+.||++.+|.+.+...
T Consensus 81 ~~~~~~~~--------~~~~~~p~l~~w~~~~~~~ 107 (114)
T cd03188 81 LRWAPGVG--------LDLSDWPNLAAYLARVAAR 107 (114)
T ss_pred HHHHhhcC--------CChhhChHHHHHHHHHHhC
Confidence 87665432 3445799999999875443
No 127
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=98.95 E-value=1e-09 Score=84.56 Aligned_cols=99 Identities=15% Similarity=0.163 Sum_probs=69.3
Q ss_pred HHhHhHHHHhhchhhhc-hhHHHHhhh-cCCCCCcccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHhH
Q psy13369 103 EGKLRVYSMRFCPYAQR-LSPAFYKCM-MGEGINPSTFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERLP 180 (311)
Q Consensus 103 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~ 180 (311)
++++.+|+++....+.. +...+.... ..+...+....++.+.|+.||+.|++ ++|++|+++|+||+++++++.++.
T Consensus 3 ~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~s~aDi~l~~~~~~~~ 80 (118)
T cd03177 3 RAIVNQRLHFDSGTLYQRLRDYYYPILFGGAEPPEEKLDKLEEALDFLETFLEG--SDYVAGDQLTIADLSLVATVSTLE 80 (118)
T ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHcc--CCeeCCCCcCHHHHHHHHHHHHHH
Confidence 77888998887654432 222222221 12223334677899999999999964 379999999999999999998886
Q ss_pred h-hhhhcCCCccCChhhhhhccCCCCCCCCCC
Q psy13369 181 S-LAELAGPEYALPADKFAQLVSSQDPPTQEG 211 (311)
Q Consensus 181 ~-~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~ 211 (311)
. .+ .+...||++++|.+.+...+
T Consensus 81 ~~~~--------~~~~~~p~l~~w~~~~~~~p 104 (118)
T cd03177 81 ALLP--------LDLSKYPNVRAWLERLKALP 104 (118)
T ss_pred HhcC--------CChhhCchHHHHHHHHHccc
Confidence 4 22 33456999999999765543
No 128
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.94 E-value=1.2e-09 Score=82.73 Aligned_cols=98 Identities=12% Similarity=0.089 Sum_probs=66.5
Q ss_pred HHhHhHHHHhhchhhhchhHH-HHhhhcCCC-CCc-----ccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHH
Q psy13369 103 EGKLRVYSMRFCPYAQRLSPA-FYKCMMGEG-INP-----STFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPW 175 (311)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~-----~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~ 175 (311)
|+++++|+.+....+.+.... +......++ ... ...+.+.+.|+.||+.|++ ++|++|+++|+|||+++++
T Consensus 3 ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~--~~~l~g~~~t~aDi~~~~~ 80 (110)
T cd03180 3 RARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLAG--RPYLAGDRFTLADIPLGCS 80 (110)
T ss_pred hhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhCC--CCcccCCCCCHHHHHHHHH
Confidence 788889998876655332222 222122111 111 1456899999999999964 4799999999999999998
Q ss_pred HHHhHhhhhhcCCCccCChhhhhhccCCCCCCCCC
Q psy13369 176 LERLPSLAELAGPEYALPADKFAQLVSSQDPPTQE 210 (311)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 210 (311)
+.+....+ .+.+.||+|++|.+++...
T Consensus 81 ~~~~~~~~--------~~~~~~p~l~~~~~~~~~~ 107 (110)
T cd03180 81 AYRWFELP--------IERPPLPHLERWYARLRAR 107 (110)
T ss_pred HHHHHHcc--------cccccCchHHHHHHHHHhC
Confidence 86543322 2356799999999876543
No 129
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=98.91 E-value=1.2e-09 Score=83.97 Aligned_cols=101 Identities=15% Similarity=0.176 Sum_probs=68.1
Q ss_pred chhHHHhHhHHHHhhchhhhch-hHHHHhhhc-CC----CCC-----cccHhHHHHhHHHHHHHHhhcCCCcccCCCCch
Q psy13369 99 PPTQEGKLRVYSMRFCPYAQRL-SPAFYKCMM-GE----GIN-----PSTFGEIVTALEPLEAELKARGTPYLSGSKPGM 167 (311)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~----~~~-----~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tl 167 (311)
+.+ ++++++|+.+....+... ...+..... .+ ... ......+.+.|+.||+.|+++ +|++||++|+
T Consensus 2 ~~~-ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~--~~l~gd~~t~ 78 (117)
T cd03182 2 PLE-RAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGS--PYVAGDRFTI 78 (117)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCC--CcccCCCCCH
Confidence 445 899999999876654322 222111111 11 111 124577899999999999643 7999999999
Q ss_pred HHHHHHHHHHHhHhhhhhcCCCccCC-hhhhhhccCCCCCCCCC
Q psy13369 168 VDYMIWPWLERLPSLAELAGPEYALP-ADKFAQLVSSQDPPTQE 210 (311)
Q Consensus 168 ADi~l~~~~~~~~~~~~~~~~~~~~~-~~~~p~l~~w~~~~~~~ 210 (311)
|||++++.+.++...+ .+ ...||+|++|.+.+...
T Consensus 79 aDi~l~~~~~~~~~~~--------~~~~~~~p~l~~w~~~~~~~ 114 (117)
T cd03182 79 ADITAFVGLDFAKVVK--------LRVPEELTHLRAWYDRMAAR 114 (117)
T ss_pred HHHHHHHHhHHHHhcC--------CCCccccHHHHHHHHHHHhc
Confidence 9999999998765443 22 34699999999865443
No 130
>KOG4244|consensus
Probab=98.90 E-value=2.6e-09 Score=90.60 Aligned_cols=179 Identities=16% Similarity=0.179 Sum_probs=110.7
Q ss_pred CCCCceEEEecc-------CChHHHHHHHHHHhcCCCeEEeec-ccccccCCCCCCceeccCCceeec-hhHhhHhhhhh
Q psy13369 17 TQEGKLRVYSMR-------FCPYAQRVHLILLAKKIPLTIHVP-VTQYRLIGSIFPTWLTTESETHWN-RTCSSYFEQKK 87 (311)
Q Consensus 17 ~~~~~~~Ly~~~-------~sp~~~rv~~~L~~~gi~~e~~~~-~~~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~~~~ 87 (311)
...+.+-||+++ .||||.||...|...+||||.+.+ ++.....+ .-||++-+|..+.+ ..|..+|.+.|
T Consensus 41 ~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~~rSr~G--~lPFIELNGe~iaDS~~I~~~L~~hf 118 (281)
T KOG4244|consen 41 YKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLKRRSRNG--TLPFIELNGEHIADSDLIEDRLRKHF 118 (281)
T ss_pred cccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccceeeccCC--CcceEEeCCeeccccHHHHHHHHHHc
Confidence 446779999975 699999999999999999998832 11122233 56888999999999 88998999999
Q ss_pred ccCCCCCCCCCchhHHHhHhHHHHhhchhh------------------------h-----chhHHHHhhhcC--------
Q psy13369 88 RREREMKRSQDPPTQEGKLRVYSMRFCPYA------------------------Q-----RLSPAFYKCMMG-------- 130 (311)
Q Consensus 88 ~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~------------------------~-----~~~~~~~~~~~~-------- 130 (311)
+ -+ ..+|.. ++++.+....+++... . .+.+.+++....
T Consensus 119 ~-~~-~~L~~e---~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~ 193 (281)
T KOG4244|consen 119 K-IP-DDLSAE---QRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRST 193 (281)
T ss_pred C-CC-CCCCHH---HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhh
Confidence 6 34 224332 2443333322222110 0 000111011110
Q ss_pred ----CCCCcccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCC
Q psy13369 131 ----EGINPSTFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDP 206 (311)
Q Consensus 131 ----~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 206 (311)
.-...+..+-+.+-|+.+++.|+++ +||.||++|-+|+.+|..++.... . +...-.++....||+|.+.-++
T Consensus 194 g~IG~f~~~Ei~ell~rDlr~i~~~Lg~K--kflfGdkit~~DatvFgqLa~v~Y-P-~~~~i~d~le~d~p~l~eYceR 269 (281)
T KOG4244|consen 194 GAIGDFESAEIDELLHRDLRAISDYLGDK--KFLFGDKITPADATVFGQLAQVYY-P-FRSHISDLLEGDFPNLLEYCER 269 (281)
T ss_pred ccccCcCHHHHHHHHHHHHHHHHHHhCCC--ccccCCCCCcceeeehhhhhheec-c-CCCcHHHHHhhhchHHHHHHHH
Confidence 0111123445667788889998654 799999999999999999876544 2 1111112345568888766554
No 131
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=4.8e-09 Score=83.56 Aligned_cols=179 Identities=17% Similarity=0.295 Sum_probs=109.6
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEeecc-----cccccCCCCCCce-eccCCceeec-hhHhhHhhhhhccCCCCC
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIHVPV-----TQYRLIGSIFPTW-LTTESETHWN-RTCSSYFEQKKRREREMK 94 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~~-----~~v~~~~~~~p~~-l~~~g~~l~E-~~I~~YL~~~~~~~~~~l 94 (311)
|+||-+..||||-|+|++.-.+|||++.++-. +.+...+.|..+. ..+||..+.| ..|.+|+++..+ . ++
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~-~--~~ 77 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDG-K--PL 77 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhcccccceEEccccccchhhhHHHHHHHHhcC-c--hh
Confidence 68999999999999999999999999876311 1222222223444 4689999999 999999999986 3 45
Q ss_pred CCCCchhHHHhHhHHHHhhchhhhch-hHHHHh-------------hhcCCCCC------------cccHhHHHHhHHHH
Q psy13369 95 RSQDPPTQEGKLRVYSMRFCPYAQRL-SPAFYK-------------CMMGEGIN------------PSTFGEIVTALEPL 148 (311)
Q Consensus 95 ~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------------~~~~~~~~------------~~~~~~~~~~l~~l 148 (311)
+...+ +...+.|+.-+..+...+ .++|.. .+..+++. ....+++..-++.+
T Consensus 78 lt~~~---~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l 154 (215)
T COG2999 78 LTGKV---RPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRAL 154 (215)
T ss_pred hccCc---CHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHHH
Confidence 54332 222334443333322221 122211 12211111 11346677777778
Q ss_pred HHHHhhcCCCcccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCCCCCCCceeeecc
Q psy13369 149 EAELKARGTPYLSGSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDPPTQEGKIRVYSM 218 (311)
Q Consensus 149 e~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~Ly~~ 218 (311)
+..+... =-....++.-||.+||.+..+.... + ..|=.++..|...+....++.||..
T Consensus 155 ~~Li~~~---s~~n~~l~~ddi~vFplLRnlt~v~---g------i~wps~v~dy~~~msektqV~Ll~s 212 (215)
T COG2999 155 DKLIVGP---SAVNGELSEDDILVFPLLRNLTLVA---G------IQWPSRVADYRDNMSEKTQVNLLSS 212 (215)
T ss_pred HHHhcCc---chhccccchhhhhhhHHhccceecc---c------CCCcHHHHHHHHHHHHhhCcchhhh
Confidence 7777432 2334578999999999987655443 2 2334567788777766667777654
No 132
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.85 E-value=4.3e-09 Score=73.92 Aligned_cols=57 Identities=19% Similarity=0.387 Sum_probs=44.7
Q ss_pred eccCChHHHHHHHHHHhcCCCeEEee-c---------ccccccCCCCCCceeccCCceeec-hhHhhHhh
Q psy13369 26 SMRFCPYAQRVHLILLAKKIPLTIHV-P---------VTQYRLIGSIFPTWLTTESETHWN-RTCSSYFE 84 (311)
Q Consensus 26 ~~~~sp~~~rv~~~L~~~gi~~e~~~-~---------~~~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~ 84 (311)
....||||+|++++|+++|++|+.+. + ++.+|+.+ +.|.|+++|.+++| .+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g--~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTG--KVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCC--cCCEEEECCEEEEcHHHHHHHhC
Confidence 46789999999999999999998871 1 12334444 45557889999999 99999984
No 133
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.85 E-value=2.2e-09 Score=80.66 Aligned_cols=95 Identities=12% Similarity=0.086 Sum_probs=65.2
Q ss_pred HHhHhHHHHhhchhhhchhHHH-H-hhhcCCCCC-----cccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHH
Q psy13369 103 EGKLRVYSMRFCPYAQRLSPAF-Y-KCMMGEGIN-----PSTFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPW 175 (311)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~-----~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~ 175 (311)
|+++++|+.+..+.+......+ . ..+...... .....++.+.++.||+.|++ ++|++|+++|+|||++++.
T Consensus 3 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~g~~~slaDi~~~~~ 80 (105)
T cd03179 3 RAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAG--RDFLVGDALTIADIALAAY 80 (105)
T ss_pred HHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHcc--CccccCCCCCHHHHHHHHH
Confidence 7889999988766553322211 1 111111111 12567788999999999953 4799999999999999999
Q ss_pred HHHhHhhhhhcCCCccCChhhhhhccCCCCCC
Q psy13369 176 LERLPSLAELAGPEYALPADKFAQLVSSQDPP 207 (311)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~ 207 (311)
+.++...+ .+.+.||++.+|.+++
T Consensus 81 ~~~~~~~~--------~~~~~~p~l~~~~~~~ 104 (105)
T cd03179 81 THVADEGG--------FDLADYPAIRAWLARI 104 (105)
T ss_pred HHhccccC--------CChHhCccHHHHHHhh
Confidence 98765433 3356799999998753
No 134
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=98.84 E-value=2.3e-09 Score=83.97 Aligned_cols=91 Identities=15% Similarity=0.229 Sum_probs=63.6
Q ss_pred chhHHHHhhhcCC--CCCcccHhHHHHhHHHHHHHHhh--------------cCCCcccCCCCchHHHHHHHHHHHhHhh
Q psy13369 119 RLSPAFYKCMMGE--GINPSTFGEIVTALEPLEAELKA--------------RGTPYLSGSKPGMVDYMIWPWLERLPSL 182 (311)
Q Consensus 119 ~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~le~~L~~--------------~~~~~l~G~~~tlADi~l~~~~~~~~~~ 182 (311)
.+.+.|..++.+. +......+.+...|+.||++|++ .+++|++|+++|+|||+++|.+.++...
T Consensus 10 ~~f~~~~~~~~~~~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~~ 89 (134)
T cd03198 10 DIFAKFSAYIKNSNPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKVV 89 (134)
T ss_pred HHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4555566666553 22334668899999999999975 2357999999999999999999877643
Q ss_pred hhhcCCCccCChhhhhhccCCCCCCCCCC
Q psy13369 183 AELAGPEYALPADKFAQLVSSQDPPTQEG 211 (311)
Q Consensus 183 ~~~~~~~~~~~~~~~p~l~~w~~~~~~~~ 211 (311)
.... ..+++ .+.||+|.+|.+++...+
T Consensus 90 ~~~~-~g~~i-~~~~P~L~aw~~ri~aRP 116 (134)
T cd03198 90 AKKY-RNFEI-PADLTGLWRYLKNAYQRE 116 (134)
T ss_pred HHhh-cCCCc-cccCHHHHHHHHHHHCCH
Confidence 2110 11222 366999999999765443
No 135
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.82 E-value=8e-09 Score=71.01 Aligned_cols=59 Identities=20% Similarity=0.162 Sum_probs=48.4
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEeecccccccCCC-----------CCCceeccCCceeec-hhHhhHhh
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIHVPVTQYRLIGS-----------IFPTWLTTESETHWN-RTCSSYFE 84 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~~~~v~~~~~-----------~~p~~l~~~g~~l~E-~~I~~YL~ 84 (311)
++||+++.||+|+|++++|.++|++|+.+ .++.... .+.|.+.++|.+++| .+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELV----PVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEE----EeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 58999999999999999999999999887 4443210 144568888999999 99999985
No 136
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=98.81 E-value=3e-09 Score=79.95 Aligned_cols=97 Identities=21% Similarity=0.224 Sum_probs=64.1
Q ss_pred HHhHhHHHHhhchhhhchhHHHHhhhc---CCCCCcccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHh
Q psy13369 103 EGKLRVYSMRFCPYAQRLSPAFYKCMM---GEGINPSTFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERL 179 (311)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~ 179 (311)
+++++.+++...+....+...++.... .+.........+.+.++.||+.|++.+++|++|+++|+||+++++++.++
T Consensus 3 ~~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~~~~ 82 (104)
T cd03192 3 AARVDALVDTIADLRAEFAKYFYEKDGEEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVLDYL 82 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHHHHH
Confidence 566777777654433333332221000 01111225677889999999999763348999999999999999999888
Q ss_pred HhhhhhcCCCccCC-hhhhhhccCCCCC
Q psy13369 180 PSLAELAGPEYALP-ADKFAQLVSSQDP 206 (311)
Q Consensus 180 ~~~~~~~~~~~~~~-~~~~p~l~~w~~~ 206 (311)
...+ +.+ ...||++.+|.++
T Consensus 83 ~~~~-------~~~~~~~~p~l~~~~~~ 103 (104)
T cd03192 83 LYLD-------PKLLLKKYPKLKALRER 103 (104)
T ss_pred HhhC-------chhhHHhChhHHHHHHh
Confidence 6554 122 5679999999874
No 137
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=98.80 E-value=2.2e-09 Score=79.18 Aligned_cols=62 Identities=32% Similarity=0.442 Sum_probs=51.6
Q ss_pred cHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCC-hhhhhhccCCCCCC
Q psy13369 137 TFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERLPSLAELAGPEYALP-ADKFAQLVSSQDPP 207 (311)
Q Consensus 137 ~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~-~~~~p~l~~w~~~~ 207 (311)
...++.+.|+.+|+.|+ +++|++|+++|+||+++++++.++...+. .. .+.||+|++|.+++
T Consensus 29 ~~~~~~~~l~~le~~l~--~~~~l~G~~~t~ADi~~~~~~~~~~~~~~-------~~~~~~~P~l~~w~~~~ 91 (95)
T PF00043_consen 29 ARAKVPRYLEVLEKRLK--GGPYLVGDKLTIADIALFPMLDWLERLGP-------DFLFEKFPKLKKWYERM 91 (95)
T ss_dssp HHHHHHHHHHHHHHHHH--TSSSSSBSS-CHHHHHHHHHHHHHHHHTT-------TTTHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc--CCCeeeccCCchhHHHHHHHHHHHHHhCC-------CcccccCHHHHHHHHHH
Confidence 56788999999999997 45899999999999999999999988872 22 37799999998753
No 138
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.78 E-value=2.4e-09 Score=79.97 Aligned_cols=65 Identities=17% Similarity=0.346 Sum_probs=51.2
Q ss_pred ccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCCCCCC
Q psy13369 136 STFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDPPTQE 210 (311)
Q Consensus 136 ~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 210 (311)
....++.+.++.+|+.|+++ +|++|+++|+|||++++++.+....+ ...+.||+|++|.+++...
T Consensus 33 ~~~~~~~~~l~~le~~L~~~--~~l~G~~~t~aDi~~~~~~~~~~~~~--------~~~~~~p~l~~~~~~~~~~ 97 (100)
T cd03206 33 TAIARAHRLLRLLEEHLAGR--DWLAGDRPTIADVAVYPYVALAPEGG--------VDLEDYPAIRRWLARIEAL 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHccC--CccCCCCCCHHHHHHHHHHHHHhccC--------CChhhCcHHHHHHHHHHhC
Confidence 46778999999999999654 79999999999999999886543222 3456799999999875443
No 139
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=98.78 E-value=2.9e-09 Score=81.18 Aligned_cols=99 Identities=17% Similarity=0.159 Sum_probs=67.5
Q ss_pred HHhHhHHHHhhchhhhchhH-HHHhhhcCCCCCc----ccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHH
Q psy13369 103 EGKLRVYSMRFCPYAQRLSP-AFYKCMMGEGINP----STFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLE 177 (311)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~ 177 (311)
++++++|+.+....+..... .+......++..+ ....++.+.++.+|+.|++ ++|++|+++|+|||++++++.
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aDi~l~~~~~ 79 (113)
T cd03178 2 RYEVLQWLFFQMGGLGPMFGQAGHFSRYAPEKIPYAIERYTNEAKRLYGVLDKRLAG--RDYLAGDEYSIADIAIFPWVR 79 (113)
T ss_pred hHHHHHHHHHHHccCCCcchHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHcc--CCcccCCCCCeeeeeHHHHHH
Confidence 67888999888775543222 1111111222111 1457788999999999963 479999999999999999988
Q ss_pred HhHhhhhhcCCCccCChhhhhhccCCCCCCCCC
Q psy13369 178 RLPSLAELAGPEYALPADKFAQLVSSQDPPTQE 210 (311)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 210 (311)
+....+. . ..+.||++.+|.+.+...
T Consensus 80 ~~~~~~~------~-~~~~~p~l~~w~~~~~~~ 105 (113)
T cd03178 80 RLEWIGI------D-DLDDFPNVKRWLDRIAAR 105 (113)
T ss_pred HHHhccc------c-chhhchHHHHHHHHHhhC
Confidence 8765431 1 145699999999875443
No 140
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=98.78 E-value=2.2e-09 Score=83.80 Aligned_cols=71 Identities=23% Similarity=0.340 Sum_probs=55.2
Q ss_pred cHhHHHHhHHHHHHHHhhc-CCCcccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCCCCCCCcee
Q psy13369 137 TFGEIVTALEPLEAELKAR-GTPYLSGSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDPPTQEGKIR 214 (311)
Q Consensus 137 ~~~~~~~~l~~le~~L~~~-~~~~l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~ 214 (311)
..+.+.+.|..||+.|+++ +++|++|+++|+||+++++.+.++.... +...+.||+|.+|.+++.+.+.+.
T Consensus 36 ~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~~~-------~~~~~~~P~l~~~~~rv~~~p~v~ 107 (126)
T cd03210 36 YIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLVLA-------PGCLDAFPLLKAFVERLSARPKLK 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHHhC-------hHhhhcChHHHHHHHHHHhCcHHH
Confidence 4566889999999999764 4589999999999999999988775432 112457999999999866655443
No 141
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=98.77 E-value=2.9e-09 Score=73.76 Aligned_cols=62 Identities=24% Similarity=0.381 Sum_probs=48.8
Q ss_pred cHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCC
Q psy13369 137 TFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQD 205 (311)
Q Consensus 137 ~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~ 205 (311)
..+.+.+.|+.||++|+++ +|++|++||+|||+++|++.++...+... -..+.||+|++|.+
T Consensus 7 ~~~~~~~~l~~le~~L~~~--~fl~G~~~s~aD~~l~~~l~~~~~~~~~~-----~~~~~~p~l~~w~~ 68 (69)
T PF13410_consen 7 ARAQLEAALDALEDHLADG--PFLFGDRPSLADIALAPFLWRLRFVGPDF-----DLLEAYPNLRAWYE 68 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTS--SBTTBSS--HHHHHHHHHHHHHHHCTHTC-----CHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhC--CCCCCCCCCHHHHHHHHHHHHHHHhCcCc-----CccccCHHHHHHHh
Confidence 5678899999999999755 59999999999999999999988775311 12367999999964
No 142
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=98.76 E-value=7.8e-09 Score=80.01 Aligned_cols=101 Identities=20% Similarity=0.308 Sum_probs=64.4
Q ss_pred CchhHHHhHhHHHHhhchhhhchhHHHHhhhcCCCCCcccHhHHHHhHHHHHHHHhh-cCCCcccCCCCchHHHHHHHHH
Q psy13369 98 DPPTQEGKLRVYSMRFCPYAQRLSPAFYKCMMGEGINPSTFGEIVTALEPLEAELKA-RGTPYLSGSKPGMVDYMIWPWL 176 (311)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~~~l~G~~~tlADi~l~~~~ 176 (311)
|+.+ |+.+.+++.+.. .+...++.....+. ..+++.+.++.||+.|++ .+++|++| ++|+|||+++|++
T Consensus 1 d~~~-ra~~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l~~~~ 70 (120)
T cd03203 1 DPAK-REFADELLAYTD----AFTKALYSSLIKGD----PSAEAAAALDYIENALSKFDDGPFFLG-QFSLVDIAYVPFI 70 (120)
T ss_pred CHHH-HHHHHHHHHHHH----HHHHHHHHHHhcCC----chHHHHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHHHHHH
Confidence 3445 888888888722 22222222221111 234678889999999964 23589999 9999999999999
Q ss_pred HHhHhh-hhhcCCCccCChhhhhhccCCCCCCCCCC
Q psy13369 177 ERLPSL-AELAGPEYALPADKFAQLVSSQDPPTQEG 211 (311)
Q Consensus 177 ~~~~~~-~~~~~~~~~~~~~~~p~l~~w~~~~~~~~ 211 (311)
.++... ....+ +.+ .+.||+|.+|.+++...+
T Consensus 71 ~~~~~~~~~~~~--~~~-~~~~P~l~~W~~~~~~rp 103 (120)
T cd03203 71 ERFQIFLSELFN--YDI-TEGRPNLAAWIEEMNKIE 103 (120)
T ss_pred HHHHHHHHHhcC--ccc-cccCcHHHHHHHHHhcch
Confidence 877542 11111 112 256999999998765443
No 143
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.76 E-value=3.3e-08 Score=69.34 Aligned_cols=68 Identities=18% Similarity=0.213 Sum_probs=59.3
Q ss_pred ceeeeccCCCchHHHHHHHHHhCCCCceEEEccCC-CCchhHHhhCCCCcccEEEeCCeeecCHHHHHH
Q psy13369 212 KIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN-EKPEWYVSSVPTGKVPALKSEGSILYESLIISD 279 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~ 279 (311)
+++||+.+.||+|++++.+|..+|++|+.+.++.. ...+++.+.++.+.+|++..+|..+..-.++.+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHh
Confidence 57899999999999999999999999999998865 345678888999999999999998887666554
No 144
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=98.75 E-value=6.5e-09 Score=80.51 Aligned_cols=90 Identities=20% Similarity=0.292 Sum_probs=64.5
Q ss_pred chhHHHHhhhcCCCCCcccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHhHhh-hhhcCCCccCChhhh
Q psy13369 119 RLSPAFYKCMMGEGINPSTFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERLPSL-AELAGPEYALPADKF 197 (311)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~~-~~~~~~~~~~~~~~~ 197 (311)
.+...+++++..+....+..+.+.+.|..||+.|++. ++|++||++|+|||++++++.++... +...+ +. ..+.|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~-~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~--~~-~~~~~ 88 (121)
T cd03201 13 KIFSTFVGFLKSKDSNDGTEQALLDELEALEDHLKEN-GPFINGEKISAVDLSLAPKLYHLEIALGHYKN--WS-VPESL 88 (121)
T ss_pred HHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhcC-CCccCCCCCCHHhHHHHHHHHHHHHHHHHhcC--CC-Ccccc
Confidence 4455566666554444556788999999999999742 48999999999999999988777642 21111 11 13679
Q ss_pred hhccCCCCCCCCCCc
Q psy13369 198 AQLVSSQDPPTQEGK 212 (311)
Q Consensus 198 p~l~~w~~~~~~~~~ 212 (311)
|+|.+|.+++...+.
T Consensus 89 P~l~~w~~rl~~rps 103 (121)
T cd03201 89 TSVKSYMKALFSRES 103 (121)
T ss_pred hHHHHHHHHHHCCch
Confidence 999999998665543
No 145
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=98.73 E-value=1e-08 Score=78.68 Aligned_cols=100 Identities=15% Similarity=0.121 Sum_probs=65.5
Q ss_pred HHhHhHHHHhhchhhhchhHH-HH-hhhc---CCCCCc----ccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHH
Q psy13369 103 EGKLRVYSMRFCPYAQRLSPA-FY-KCMM---GEGINP----STFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIW 173 (311)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~-~~-~~~~---~~~~~~----~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~ 173 (311)
|+++.+|+.+....+...... +. ..+. +..... .....+.+.|+.||++|++ ++|++|+++|+|||+++
T Consensus 3 ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aDi~l~ 80 (118)
T cd03187 3 RAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSK--SKYLAGDSFTLADLSHL 80 (118)
T ss_pred hHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHccc--CcccCCCCccHHHHHHH
Confidence 777888888766544332211 11 1111 111111 1456889999999999964 47999999999999999
Q ss_pred HHHHHhHhhhhhcCCCccCChhhhhhccCCCCCCCCC
Q psy13369 174 PWLERLPSLAELAGPEYALPADKFAQLVSSQDPPTQE 210 (311)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 210 (311)
+++.++...+. ....+.||++++|.+.+...
T Consensus 81 ~~~~~~~~~~~------~~~~~~~p~l~~~~~~~~~~ 111 (118)
T cd03187 81 PYLQYLMATPF------AKLFDSRPHVKAWWEDISAR 111 (118)
T ss_pred HHHHHHHHccc------hhhhhcCchHHHHHHHHHhC
Confidence 99887653220 12235699999999875544
No 146
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=98.71 E-value=6.4e-09 Score=82.40 Aligned_cols=72 Identities=17% Similarity=0.167 Sum_probs=55.1
Q ss_pred hHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCCCCCCCceeeec
Q psy13369 139 GEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDPPTQEGKIRVYS 217 (311)
Q Consensus 139 ~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~Ly~ 217 (311)
..+.+.|+.||+.|+.++++|++|+++|+||++++..+.++.... +.....||+|++|.+++...+.++-|.
T Consensus 42 ~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~~~~~~-------~~~l~~~P~l~~~~~rv~~~P~vk~~~ 113 (137)
T cd03208 42 KAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILMVEELD-------PSLLSDFPLLQAFKTRISNLPTIKKFL 113 (137)
T ss_pred HHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHHHHHhc-------hhhhccChHHHHHHHHHHcCHHHHHHH
Confidence 356789999999997545689999999999999999998876432 122457999999999876666554443
No 147
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=98.71 E-value=9.8e-09 Score=76.54 Aligned_cols=61 Identities=30% Similarity=0.495 Sum_probs=47.6
Q ss_pred cHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCC
Q psy13369 137 TFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDP 206 (311)
Q Consensus 137 ~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 206 (311)
..+++.+.++.||++|++++|+|++|++||+||+++++.+..+.... ++ +.||+|.+|.++
T Consensus 36 ~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~~~~--------~~-~~~p~L~~w~~r 96 (99)
T PF14497_consen 36 SREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLRWAD--------FP-KDYPNLVRWYER 96 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHHCCH--------HT-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHhhcc--------cc-cccHHHHHHHHh
Confidence 57889999999999999887779999999999999999885554221 11 468999988764
No 148
>KOG3029|consensus
Probab=98.70 E-value=3.3e-08 Score=84.37 Aligned_cols=71 Identities=24% Similarity=0.307 Sum_probs=61.7
Q ss_pred CceeeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHH
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDE 283 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 283 (311)
-.++||.+..||+|.|||..|.+.|++|+++.|+.-.+.+ .+-+..++||+|+.+|..+.||++|+.-|+.
T Consensus 89 L~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~e--Ik~SsykKVPil~~~Geqm~dSsvIIs~laT 159 (370)
T KOG3029|consen 89 LDLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQE--IKWSSYKKVPILLIRGEQMVDSSVIISLLAT 159 (370)
T ss_pred ceEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhhh--ccccccccccEEEeccceechhHHHHHHHHH
Confidence 4789999999999999999999999999999999775444 4456789999999878789999999987753
No 149
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=98.69 E-value=2.5e-08 Score=77.21 Aligned_cols=102 Identities=14% Similarity=0.033 Sum_probs=67.6
Q ss_pred HHhHhHHHHhhchhhhchhH-HHHhhhcCCCCCc----ccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHH
Q psy13369 103 EGKLRVYSMRFCPYAQRLSP-AFYKCMMGEGINP----STFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLE 177 (311)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~ 177 (311)
|+++++|+.++...+..... .+.......+... .....+.+.|+.||+.|+. ++|++|+++|+|||++++.+.
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~--~~~l~G~~~siaDi~l~~~~~ 79 (123)
T cd03181 2 EAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVLEERLLK--RTYLVGERLTLADIFVAGALL 79 (123)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHcc--CceeccCCccHHHHHHHHHHH
Confidence 67888999888775543222 2222221111111 1456788899999999964 379999999999999999998
Q ss_pred HhHhhhhhcCCCccCChhhhhhccCCCCCCCCCC
Q psy13369 178 RLPSLAELAGPEYALPADKFAQLVSSQDPPTQEG 211 (311)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~ 211 (311)
+...... +. ...+.||++.+|.+.+...+
T Consensus 80 ~~~~~~~--~~---~~~~~~p~l~~w~~~~~~~p 108 (123)
T cd03181 80 LGFTYVF--DK---EWRAKYPNVTRWFNTVVNQP 108 (123)
T ss_pred HHHHHHc--CH---HHHHhChHHHHHHHHHHcCH
Confidence 8654331 00 11356999999998754443
No 150
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=98.69 E-value=3.4e-08 Score=69.88 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=46.0
Q ss_pred ceEEEeccCChHHHHHHHHHHhcCCCeEEee-c----------ccccccC-CCCCCceeccC-Cceeec-hhHhhHhhh
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLAKKIPLTIHV-P----------VTQYRLI-GSIFPTWLTTE-SETHWN-RTCSSYFEQ 85 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~-~----------~~~v~~~-~~~~p~~l~~~-g~~l~E-~~I~~YL~~ 85 (311)
+++||+.+. +++++|++|+++|++|+.+. + +...++. + +.|.|+++ |.+|+| .+|++||++
T Consensus 2 ~l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g--~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 2 TLTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFG--KVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSS--SSSEEEETTTEEEESHHHHHHHHHH
T ss_pred EEEEECCCC--chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccc--eeeEEEECCCCEEEcHHHHHHHhCC
Confidence 466776654 99999999999999998872 1 1244555 4 66778888 999999 999999985
No 151
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.68 E-value=2.3e-08 Score=76.62 Aligned_cols=95 Identities=16% Similarity=0.068 Sum_probs=65.9
Q ss_pred HHhHhHHHHhhchhhhchhH--HHHhhhcCCC---CCcccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHH
Q psy13369 103 EGKLRVYSMRFCPYAQRLSP--AFYKCMMGEG---INPSTFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLE 177 (311)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~ 177 (311)
|++++.|+.++.+.++.... .+.+.+.+.. ......+.+.+.++.+|.+|+ .+++|++| ++|+||+++++.+.
T Consensus 4 ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~-~~~~~l~G-~fSiAD~~l~~~~~ 81 (114)
T cd03195 4 RARARQVQAWLRSDLLPIRVERSTEVVFAGAKAEPLSEAAQAAAEKLIAVAEALLP-PGAANLFG-EWCIADTDLALMLN 81 (114)
T ss_pred hHHHHHHHHHHHhhHHHHHHhCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHh-cCCCcccC-CccHHHHHHHHHHH
Confidence 89999999999886654311 0011111111 122356778899999999996 34479999 59999999999999
Q ss_pred HhHhhhhhcCCCccCChhhhhhccCCCCCCCC
Q psy13369 178 RLPSLAELAGPEYALPADKFAQLVSSQDPPTQ 209 (311)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~ 209 (311)
|+...+ ++.+ |++++|.+++..
T Consensus 82 ~~~~~g--------~~l~--p~l~ay~~r~~~ 103 (114)
T cd03195 82 RLVLNG--------DPVP--ERLRDYARRQWQ 103 (114)
T ss_pred HHHHcC--------CCCC--HHHHHHHHHHHC
Confidence 988776 3333 788888776443
No 152
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.67 E-value=1.5e-08 Score=76.90 Aligned_cols=71 Identities=24% Similarity=0.248 Sum_probs=53.2
Q ss_pred cHhHHHHhHHHHHHHHhhcC--------CCcccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCCCC
Q psy13369 137 TFGEIVTALEPLEAELKARG--------TPYLSGSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDPPT 208 (311)
Q Consensus 137 ~~~~~~~~l~~le~~L~~~~--------~~~l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~ 208 (311)
...++.+.|+.||++|.++. ++|++|+++|+|||++++++.++...+... .+ .....||+|.+|.+++.
T Consensus 30 ~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~~~~~--~~-~~~~~~P~l~~w~~rv~ 106 (111)
T cd03204 30 ILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFLGLSR--RY-WGNGKRPNLEAYFERVL 106 (111)
T ss_pred HHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHcCccc--cc-cccccChHHHHHHHHHH
Confidence 56789999999999997542 269999999999999999999887554110 00 01356999999998754
Q ss_pred CC
Q psy13369 209 QE 210 (311)
Q Consensus 209 ~~ 210 (311)
..
T Consensus 107 aR 108 (111)
T cd03204 107 QR 108 (111)
T ss_pred cC
Confidence 43
No 153
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.67 E-value=6.6e-08 Score=69.19 Aligned_cols=62 Identities=6% Similarity=0.089 Sum_probs=50.2
Q ss_pred CceeeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEEeCCeeec
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALKSEGSILY 272 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~ 272 (311)
+++++|..+.||+|.+++.+|..+||+|+.+.++......+.+..++...||+++.++..+.
T Consensus 1 ~~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~~~~~ 62 (81)
T PRK10329 1 MRITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIAGDLSWS 62 (81)
T ss_pred CEEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEECCEEEe
Confidence 36899999999999999999999999999999986532233344578899999997775543
No 154
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=98.66 E-value=2.7e-08 Score=73.56 Aligned_cols=63 Identities=35% Similarity=0.517 Sum_probs=50.6
Q ss_pred cHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCC
Q psy13369 137 TFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDP 206 (311)
Q Consensus 137 ~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 206 (311)
..+++.+.++.||+.|+++ +|++|+++|+||+++++++.++........ ..+.+|++.+|.+.
T Consensus 37 ~~~~~~~~~~~l~~~L~~~--~~~~g~~~t~aDi~~~~~l~~~~~~~~~~~-----~~~~~p~l~~~~~~ 99 (100)
T cd00299 37 AREELAAALAALEKLLAGR--PYLAGDRFSLADIALAPVLARLDLLGPLLG-----LLDEYPRLAAWYDR 99 (100)
T ss_pred HHHHHHHHHHHHHHHHccC--CCCCCCCcCHHHHHHHHHHHHHHHhhhhhh-----hhccCccHHHHHHh
Confidence 5678999999999999643 799999999999999999999877652110 24569999999764
No 155
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=98.65 E-value=1.8e-08 Score=78.54 Aligned_cols=64 Identities=13% Similarity=0.140 Sum_probs=49.4
Q ss_pred cHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCC-hhhhhhccCCCCCCCC
Q psy13369 137 TFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERLPSLAELAGPEYALP-ADKFAQLVSSQDPPTQ 209 (311)
Q Consensus 137 ~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~-~~~~p~l~~w~~~~~~ 209 (311)
..+.+.+.++.+|+.|.+ +++|++|+++|+|||++++.+.+....+ .+ .+.||+|.+|.+++..
T Consensus 46 ~~~~~~~~l~~le~~l~~-~~~~l~Gd~~t~ADi~l~~~~~~~~~~~--------~~~~~~~p~l~~w~~~~~~ 110 (126)
T cd03183 46 AEENLEESLDLLENYFLK-DKPFLAGDEISIADLSAVCEIMQPEAAG--------YDVFEGRPKLAAWRKRVKE 110 (126)
T ss_pred HHHHHHHHHHHHHHHHhc-CCCcccCCCCCHHHHHHHHHHHHHHhcC--------CcccccCchHHHHHHHHHH
Confidence 456788999999997533 3479999999999999999887665433 22 3569999999997554
No 156
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.65 E-value=1.1e-07 Score=66.25 Aligned_cols=70 Identities=19% Similarity=0.378 Sum_probs=57.9
Q ss_pred ceeeeccCCCchHHHHHHHHHhCCCCceEEEccCC-CCchhHHhhCCCCcccEEEeCCeee--cCHHHHHHHH
Q psy13369 212 KIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN-EKPEWYVSSVPTGKVPALKSEGSIL--YESLIISDYL 281 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~vP~l~~~~~~l--~es~aI~~yL 281 (311)
++++|+.++||+|++++.+|..+|++|..+.++.. +..+++.+.++.+.+|+|+.+|..+ .++.+|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 37899999999999999999999999998888754 2345677889999999999888777 6666666665
No 157
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.65 E-value=1.1e-07 Score=65.76 Aligned_cols=69 Identities=20% Similarity=0.206 Sum_probs=60.5
Q ss_pred ceeeeccCCCchHHHHHHHHHhCCCCceEEEccCCC-CchhHHhhCCCCcccEEEeCCeeecCHHHHHHH
Q psy13369 212 KIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNE-KPEWYVSSVPTGKVPALKSEGSILYESLIISDY 280 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y 280 (311)
++++|+.+.||+|++++.+|..+|++|+.+.++... ..+++.+.++..++|++..+|..+.++..|.+-
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 468999999999999999999999999988887653 456677889999999999999999999888764
No 158
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=98.64 E-value=9.3e-09 Score=79.63 Aligned_cols=68 Identities=19% Similarity=0.265 Sum_probs=52.6
Q ss_pred cHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCCCCCCCce
Q psy13369 137 TFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDPPTQEGKI 213 (311)
Q Consensus 137 ~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~ 213 (311)
....+.+.++.||++|++ ++|++|+++|+||+++++.+.++..... ...+.||+|.+|.++....+.+
T Consensus 36 ~~~~~~~~l~~le~~L~~--~~~l~G~~~T~aDi~l~~~~~~~~~~~~-------~~~~~~P~l~~~~~rv~~~p~v 103 (121)
T cd03209 36 YLAKLPDKLKLFSDFLGD--RPWFAGDKITYVDFLLYEALDQHRIFEP-------DCLDAFPNLKDFLERFEALPKI 103 (121)
T ss_pred HHHHHHHHHHHHHHHhCC--CCCcCCCCccHHHHHHHHHHHHHHHhCc-------cccccChHHHHHHHHHHHCHHH
Confidence 456788899999999964 3799999999999999999888765431 2245699999998876554443
No 159
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.63 E-value=8.3e-08 Score=67.02 Aligned_cols=63 Identities=11% Similarity=0.073 Sum_probs=48.7
Q ss_pred CCceEEEeccCChHHHHHHHHHHhcCCCeEEeeccc---ccccCCCCCCceeccCCceeec-hhHhhHhhhh
Q psy13369 19 EGKLRVYSMRFCPYAQRVHLILLAKKIPLTIHVPVT---QYRLIGSIFPTWLTTESETHWN-RTCSSYFEQK 86 (311)
Q Consensus 19 ~~~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~~~---~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~~~ 86 (311)
++..+|+ +-+++|.|++++|++.|++|+.+ .+. ..++.+ +-|+|++||.+++| .+|++||+++
T Consensus 8 ~~~~~~~--~~~~~~~kv~~~L~elglpye~~-~~~~~~~~~P~G--kVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 8 EEEQILL--PDNASCLAVQTFLKMCNLPFNVR-CRANAEFMSPSG--KVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred ccCeeec--CCCCCHHHHHHHHHHcCCCcEEE-ecCCccccCCCC--cccEEEECCEEEeCHHHHHHHHhcC
Confidence 3445666 35889999999999999999987 221 133344 66789999999999 9999999864
No 160
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=98.60 E-value=2e-08 Score=73.12 Aligned_cols=68 Identities=16% Similarity=0.240 Sum_probs=50.9
Q ss_pred ccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCC
Q psy13369 136 STFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDP 206 (311)
Q Consensus 136 ~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 206 (311)
...+++.+.++.+|+.|+++ +|++|+++|+|||++++++.++...+.. ....+.+.+.||++.+|.++
T Consensus 19 ~~~~~~~~~l~~le~~L~~~--~yl~Gd~~t~aDi~l~~~l~~~~~~~~~-~~~~~~~~~~~p~l~~~~~r 86 (88)
T cd03193 19 EIYSLAKKDLKALSDLLGDK--KFFFGDKPTSLDATVFGHLASILYAPLP-NSALQLILKEYPNLVEYCER 86 (88)
T ss_pred HHHHHHHHHHHHHHHHhCCC--CccCCCCCCHHHHHHHHHHHHHHhcCCC-ChHHHHHHHhCcHHHHHHHH
Confidence 45678999999999999754 7999999999999999999887643210 00011234569999999875
No 161
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.5e-07 Score=65.97 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=58.1
Q ss_pred ceeeeccCCCchHHHHHHHHHhCCCCceEEEccCCC--CchhHHhh-CCCCcccEEEeCCeeecCHHHHHHHH
Q psy13369 212 KIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNE--KPEWYVSS-VPTGKVPALKSEGSILYESLIISDYL 281 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~--~~~~~~~~-~p~~~vP~l~~~~~~l~es~aI~~yL 281 (311)
.+++|..+.||||.+++-+|..+|++|+.+.++... ...++.+. ++..+||+|+.+|..+.-+..+.++.
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~ 74 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALE 74 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHH
Confidence 578999999999999999999999999999998886 55456554 48999999999998877655555543
No 162
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.58 E-value=2.2e-08 Score=75.11 Aligned_cols=65 Identities=22% Similarity=0.202 Sum_probs=51.9
Q ss_pred ccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCCCCCCC
Q psy13369 136 STFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDPPTQEG 211 (311)
Q Consensus 136 ~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~ 211 (311)
....++.+.++.||++|+++ +|++|+++|+|||++++++.+....+ . ...+|++.+|.+++...+
T Consensus 30 ~~~~~~~~~l~~le~~l~~~--~~l~g~~~t~aDi~~~~~~~~~~~~~--------~-~~~~p~l~~w~~~~~~~p 94 (103)
T cd03207 30 AGFGSYDDVLAALEQALAKG--PYLLGERFTAADVLVGSPLGWGLQFG--------L-LPERPAFDAYIARITDRP 94 (103)
T ss_pred hhhhhHHHHHHHHHHHHccC--CcccCCccCHHHHHHHHHHHHHHHcC--------C-CCCChHHHHHHHHHHcCH
Confidence 35678999999999999643 79999999999999999988876432 1 245999999998755443
No 163
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.57 E-value=2.8e-07 Score=64.83 Aligned_cols=71 Identities=15% Similarity=0.190 Sum_probs=58.8
Q ss_pred ceeeeccCCCchHHHHHHHHHhCCCCceEEEccCC-CCchhHHhhCCCC-cccEEEeCCeeecCHHHHHHHHH
Q psy13369 212 KIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN-EKPEWYVSSVPTG-KVPALKSEGSILYESLIISDYLD 282 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~-~~~~~~~~~~p~~-~vP~l~~~~~~l~es~aI~~yL~ 282 (311)
+++||+.+.||+|.+++.+|..+|++|+.+.++.. +..+++.+..+.. .+|+++.+|..+.....+.++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 47899999999999999999999999999998865 2334455555554 89999999999999999887743
No 164
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.56 E-value=3.9e-07 Score=65.86 Aligned_cols=76 Identities=14% Similarity=0.144 Sum_probs=63.6
Q ss_pred CceeeeccCCCchHHHHHHHHHh-----CCCCceEEEccCCC-CchhHHhhCCC--CcccEEEeCCeeecCHHHHHHHHH
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILLA-----KKIPHDPVFINLNE-KPEWYVSSVPT--GKVPALKSEGSILYESLIISDYLD 282 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~~-----~gi~~~~~~v~~~~-~~~~~~~~~p~--~~vP~l~~~~~~l~es~aI~~yL~ 282 (311)
+++++|+.++||+|.+++-+|.. .|++|+.+.++-.. ..+++.+.... ..||++..+|..+.....|.+++.
T Consensus 1 m~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~ 80 (85)
T PRK11200 1 MFVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVK 80 (85)
T ss_pred CEEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHH
Confidence 46899999999999999999999 89999999988542 23445554443 689999999999999999999998
Q ss_pred HhcC
Q psy13369 283 EKYE 286 (311)
Q Consensus 283 ~~~~ 286 (311)
+.++
T Consensus 81 ~~~~ 84 (85)
T PRK11200 81 ENLG 84 (85)
T ss_pred Hhcc
Confidence 8764
No 165
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.55 E-value=2.2e-07 Score=64.59 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=52.9
Q ss_pred ceeeeccCCCchHHHHHHHHHhCCCCceEEEccCC-CCchhHHhhCCCCcccEEEeCCeeecC
Q psy13369 212 KIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN-EKPEWYVSSVPTGKVPALKSEGSILYE 273 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~vP~l~~~~~~l~e 273 (311)
++++|+.++|++|.+++.+|.++|++|+.+.++.. +..+++.+.+|.+.+|+|+.+|..+..
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g 63 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSG 63 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEec
Confidence 36899999999999999999999999999988765 334567788999999999988766544
No 166
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.51 E-value=1e-07 Score=73.00 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=48.9
Q ss_pred cHhHHHHhHHHHHHHHhhc-CCCcccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCCCCCCC
Q psy13369 137 TFGEIVTALEPLEAELKAR-GTPYLSGSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDPPTQEG 211 (311)
Q Consensus 137 ~~~~~~~~l~~le~~L~~~-~~~~l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~ 211 (311)
..+.+.+.++.+|..|+.. +++|++|| +|+||+++++++.+....+ .+. .|++++|.+++...+
T Consensus 42 ~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~~~--------~~~--~P~l~~~~~rv~~rP 106 (114)
T cd03194 42 VQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFRTYG--------LPL--SPAAQAYVDALLAHP 106 (114)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHHcC--------CCC--CHHHHHHHHHHHCCH
Confidence 5667778888888888644 56899999 9999999999998876443 222 299999988765544
No 167
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.50 E-value=6.6e-08 Score=75.23 Aligned_cols=64 Identities=23% Similarity=0.453 Sum_probs=51.4
Q ss_pred ccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCCC
Q psy13369 136 STFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDPP 207 (311)
Q Consensus 136 ~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~ 207 (311)
...+.+.+.|+.||++|++ ++|++|+++|+||+++++++.+...... .++ .+.||+|.+|.+++
T Consensus 58 ~~~~~~~~~l~~l~~~L~~--~~fl~Gd~~t~AD~~l~~~l~~~~~~~~-----~~~-~~~~p~l~~W~~r~ 121 (124)
T cd03202 58 AALANFRAALEPLRATLKG--QPFLGGAAPNYADYIVFGGFQWARIVSP-----FPL-LEEDDPVYDWFERC 121 (124)
T ss_pred HHHHHHHHHHHHHHHHHcC--CCccCCCCCchhHHHHHHHHHHHHHcCc-----ccc-cccCChHHHHHHHH
Confidence 4678899999999999964 4899999999999999999988765421 111 35699999998864
No 168
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=98.49 E-value=4.4e-07 Score=63.52 Aligned_cols=59 Identities=29% Similarity=0.281 Sum_probs=50.4
Q ss_pred CCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHHh
Q psy13369 219 RFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDEK 284 (311)
Q Consensus 219 ~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 284 (311)
..||+|.++.+.|...|++|+.+...- -...|.|++|+|+++|..+.+|..|++||.++
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~n-------~~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSNN-------PWRSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecCC-------CCCCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 357999999999999999998774431 13468999999999999999999999999865
No 169
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.49 E-value=5.7e-07 Score=64.00 Aligned_cols=71 Identities=14% Similarity=0.237 Sum_probs=61.1
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCC-CCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHH
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN-EKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDE 283 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 283 (311)
+++|+.+.||+|.+++.+|..+|++|+.+.++.. ...+++.+..+...+|+++.+|..+.....+...-++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 4799999999999999999999999999999866 3445667777888999999999999998888877554
No 170
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.45 E-value=4e-07 Score=64.19 Aligned_cols=70 Identities=26% Similarity=0.315 Sum_probs=55.2
Q ss_pred ceeeeccCCCchHHHHHHHHHhCCCCceEEEccCCC-CchhHHhhC-CCCcccEEE-eCCeeecCHH--HHHHHH
Q psy13369 212 KIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNE-KPEWYVSSV-PTGKVPALK-SEGSILYESL--IISDYL 281 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~-~~~~~~~~~-p~~~vP~l~-~~~~~l~es~--aI~~yL 281 (311)
++++|+.++||+|++++..|...|++|+.+.++... ..+.+.+.+ +...+|+++ ++|..++++. .++.+|
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~~~~~~~~l 75 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPSAAQVKAKL 75 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCCHHHHHHHh
Confidence 478999999999999999999999999988877553 344556676 889999998 6777777644 444444
No 171
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.44 E-value=1.2e-06 Score=63.49 Aligned_cols=74 Identities=12% Similarity=0.183 Sum_probs=59.6
Q ss_pred eeeeccCCCchHHHHHHHHHhCC-----CCceEEEccCCC-CchhHHhhCCC--CcccEEEeCCeeecCHHHHHHHHHHh
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKK-----IPHDPVFINLNE-KPEWYVSSVPT--GKVPALKSEGSILYESLIISDYLDEK 284 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~g-----i~~~~~~v~~~~-~~~~~~~~~p~--~~vP~l~~~~~~l~es~aI~~yL~~~ 284 (311)
+++|+.++||+|.+++.+|..++ ++|+.+.++... ..+++...... ..||++..+|..+..+..|..++.++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~ 81 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKEN 81 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhc
Confidence 57999999999999999999985 567777776432 23445555544 68999999999999999999999887
Q ss_pred cC
Q psy13369 285 YE 286 (311)
Q Consensus 285 ~~ 286 (311)
++
T Consensus 82 ~~ 83 (86)
T TIGR02183 82 FD 83 (86)
T ss_pred cc
Confidence 64
No 172
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.40 E-value=7.1e-07 Score=62.33 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=46.6
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEEeCCe
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALKSEGS 269 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~ 269 (311)
+++|+.+.||+|++++.+|..+|++|+.+.++......+.+...+...||+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCcccCEEEECCC
Confidence 479999999999999999999999999999986643333344567789999997553
No 173
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.36 E-value=2e-06 Score=61.26 Aligned_cols=63 Identities=11% Similarity=0.122 Sum_probs=50.0
Q ss_pred CCCceEEEeccCChHHHHHHHHHHhcCCCeEEeecccccccC----------CCCCCceeccCCceeec-hhHhhHhh
Q psy13369 18 QEGKLRVYSMRFCPYAQRVHLILLAKKIPLTIHVPVTQYRLI----------GSIFPTWLTTESETHWN-RTCSSYFE 84 (311)
Q Consensus 18 ~~~~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~~~~v~~~----------~~~~p~~l~~~g~~l~E-~~I~~YL~ 84 (311)
.++.++||+..+||+|++++.+|..+|++|+.+ .++-. +....|.+..||..+.+ ..|.+||+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~i----di~~~~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYDFEEI----PLGNDARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEE----ECCCChHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 367899999999999999999999999999887 44321 10134446678899999 99998984
No 174
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.35 E-value=5.7e-07 Score=60.41 Aligned_cols=59 Identities=25% Similarity=0.393 Sum_probs=51.6
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCC-CCchhHHhhCCCCcccEEEeCCeee
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN-EKPEWYVSSVPTGKVPALKSEGSIL 271 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~vP~l~~~~~~l 271 (311)
+++|+.+.||+|.+++.+|..+|++|+.+.++.. ...+++.+..+...+|++..||..+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 4799999999999999999999999999999987 4556666777889999999988754
No 175
>PHA03050 glutaredoxin; Provisional
Probab=98.35 E-value=1.2e-06 Score=66.24 Aligned_cols=72 Identities=13% Similarity=0.127 Sum_probs=60.9
Q ss_pred CCCCceeeeccCCCchHHHHHHHHHhCCC---CceEEEccCCC----CchhHHhhCCCCcccEEEeCCeeecCHHHHHH
Q psy13369 208 TQEGKIRVYSMRFCPYAQRVHLILLAKKI---PHDPVFINLNE----KPEWYVSSVPTGKVPALKSEGSILYESLIISD 279 (311)
Q Consensus 208 ~~~~~~~Ly~~~~~~~~~~~r~~L~~~gi---~~~~~~v~~~~----~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~ 279 (311)
....++++|..++||||.+++-+|...|+ +|+.+.++-.. ..+++.+.++..+||+++.+|..+.....+..
T Consensus 10 i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 10 LANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred hccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 34567999999999999999999999999 78888888532 24567778888999999999999988887776
No 176
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.34 E-value=3.9e-06 Score=62.44 Aligned_cols=73 Identities=15% Similarity=0.086 Sum_probs=61.0
Q ss_pred CCCceeeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCch----hHHhhCCCCcccEEEeCCeeecCHHHHHHHH
Q psy13369 209 QEGKIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPE----WYVSSVPTGKVPALKSEGSILYESLIISDYL 281 (311)
Q Consensus 209 ~~~~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~----~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 281 (311)
...++++|..++||+|.+++-+|...|++|+.+.++...... ++.+.++..+||++..+|..+.....+..-.
T Consensus 6 ~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l~ 82 (99)
T TIGR02189 6 SEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMALH 82 (99)
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHHH
Confidence 356799999999999999999999999999999998663322 3455678899999999999999988877743
No 177
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.31 E-value=4.1e-07 Score=72.02 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=50.9
Q ss_pred ccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHhHhhhhhcCCCccC-ChhhhhhccCCCCCC
Q psy13369 136 STFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERLPSLAELAGPEYAL-PADKFAQLVSSQDPP 207 (311)
Q Consensus 136 ~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~-~~~~~p~l~~w~~~~ 207 (311)
+.++.+..+++.+-+.+..+ ++|++|+++|+|||++++++..+..+. .+ +...||+|.+|.+++
T Consensus 79 D~r~~L~~a~~~w~~~~~~~-~~FlaGd~ptIADisvyg~l~s~e~~~-------~~~Dl~~~p~I~~W~eRm 143 (149)
T cd03197 79 DVREWLYDALNTWVAALGKD-RQFHGGSKPNLADLAVYGVLRSVEGHP-------AFKDMVEETKIGEWYERM 143 (149)
T ss_pred hHHHHHHHHHHHHHHHhcCC-CCccCCCCCCHHHHHHHHHHHHHHHhc-------cccchhhCcCHHHHHHHH
Confidence 45677888887776666543 479999999999999999998887774 14 667899999999864
No 178
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.28 E-value=5.8e-06 Score=58.99 Aligned_cols=72 Identities=17% Similarity=0.278 Sum_probs=61.9
Q ss_pred ceeeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCc----hhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHH
Q psy13369 212 KIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKP----EWYVSSVPTGKVPALKSEGSILYESLIISDYLDE 283 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~----~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 283 (311)
++++|+.+.||+|.+++-+|...+++|+.+.++..... ..+.+.++...+|++..+|..+.++..|..+..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 47899999999999999999999999999998877442 2355667788999999999999999999988764
No 179
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.21 E-value=2.4e-06 Score=63.37 Aligned_cols=60 Identities=23% Similarity=0.124 Sum_probs=46.2
Q ss_pred cHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCC
Q psy13369 137 TFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDP 206 (311)
Q Consensus 137 ~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 206 (311)
....+.+.|+.+|++|+++ +| +++|+|||++++.+.+...... + . ...+.||+|.+|.++
T Consensus 38 ~~~~~~~~l~~le~~L~~~--~~---d~~TlADi~l~~~l~~~~~~~~--~--~-~~~~~~p~l~~w~~r 97 (98)
T cd03205 38 QRGKIERALDALEAELAKL--PL---DPLDLADIAVACALGYLDFRHP--D--L-DWRAAHPALAAWYAR 97 (98)
T ss_pred HHHHHHHHHHHHHHhhhhC--CC---CCCCHHHHHHHHHHHHHHhHcc--C--c-chhhhChHHHHHHHh
Confidence 4678999999999999653 67 9999999999999988764321 0 1 114679999999875
No 180
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.17 E-value=9.7e-06 Score=60.09 Aligned_cols=73 Identities=21% Similarity=0.217 Sum_probs=59.1
Q ss_pred CCceeeecc-----CCCchHHHHHHHHHhCCCCceEEEccCC-CCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHH
Q psy13369 210 EGKIRVYSM-----RFCPYAQRVHLILLAKKIPHDPVFINLN-EKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLD 282 (311)
Q Consensus 210 ~~~~~Ly~~-----~~~~~~~~~r~~L~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 282 (311)
..++.+|.. +.||+|.+++-+|..+|++|+.+.+.-. ....++.+.++...+|.+..+|..+.....+.....
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~~ 89 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMYQ 89 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHHH
Confidence 467888865 8899999999999999999998888543 233445567888899999999999988888877543
No 181
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.12 E-value=1.5e-05 Score=58.25 Aligned_cols=72 Identities=15% Similarity=0.154 Sum_probs=59.4
Q ss_pred CCceeeecc-----CCCchHHHHHHHHHhCCCCceEEEccCC-CCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHH
Q psy13369 210 EGKIRVYSM-----RFCPYAQRVHLILLAKKIPHDPVFINLN-EKPEWYVSSVPTGKVPALKSEGSILYESLIISDYL 281 (311)
Q Consensus 210 ~~~~~Ly~~-----~~~~~~~~~r~~L~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 281 (311)
..++++|.. +.||+|.+++-+|...|++|+.+.++.. ....++.+.++..++|++..+|..+.....+....
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHH
Confidence 456788865 6899999999999999999999998755 23345566778889999999999999998888754
No 182
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.10 E-value=1.2e-05 Score=56.01 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=47.9
Q ss_pred ceEEEeccCChHHHHHHHHHHhcCCCeEEeecccccccCC---------C-CCCceeccCCceeec-hhHhhHhh
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLAKKIPLTIHVPVTQYRLIG---------S-IFPTWLTTESETHWN-RTCSSYFE 84 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~~~~v~~~~---------~-~~p~~l~~~g~~l~E-~~I~~YL~ 84 (311)
+++||+...||+|.+++-+|...|++|+.+ +++... + ...|.+..||..+.+ ..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~----~v~~~~~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEI----PLGKDITGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEE----ECCCChhHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 689999999999999999999999999877 553221 1 234556778888999 88988874
No 183
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.08 E-value=2.9e-05 Score=55.56 Aligned_cols=71 Identities=15% Similarity=0.279 Sum_probs=59.4
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCC--ceEEEccCCCCch----hHHhhCCCCcccEEEeCCeeecCHHHHHHHHHH
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIP--HDPVFINLNEKPE----WYVSSVPTGKVPALKSEGSILYESLIISDYLDE 283 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~--~~~~~v~~~~~~~----~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 283 (311)
+++|+.++||+|.+++-+|...+++ |+.+.++..+... .+.+..+...+|++..+|..+..+..+.....+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4689999999999999999999999 8888888764332 245567778999999999999999998887654
No 184
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.04 E-value=2.7e-06 Score=66.34 Aligned_cols=69 Identities=19% Similarity=0.291 Sum_probs=50.5
Q ss_pred ccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCCC
Q psy13369 136 STFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDPP 207 (311)
Q Consensus 136 ~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~ 207 (311)
+..+...+.|+.|++.|+++ +||+||+||.||+++++++..+...... ..........||+|.+|.+++
T Consensus 57 e~~~~~~~~l~aLs~~Lg~~--~~l~Gd~pT~~Da~vf~~la~~~~~~~~-~~~l~~~~~~~pnL~~y~~Ri 125 (126)
T cd03211 57 QVIEEVDQCCQALSQRLGTQ--PYFFGDQPTELDALVFGHLFTILTTQLP-NDELAEKVKKYSNLLAFCRRI 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHCCC--CCCCCCCCcHHHHHHHHHHHHHHhcCCC-ChHHHHHHHhCcHHHHHHHhc
Confidence 45677889999999999764 7999999999999999998776533110 001112256799999987753
No 185
>KOG4244|consensus
Probab=97.94 E-value=5.5e-05 Score=64.67 Aligned_cols=88 Identities=23% Similarity=0.340 Sum_probs=68.4
Q ss_pred CceeeeccC-------CCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHH
Q psy13369 211 GKIRVYSMR-------FCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDE 283 (311)
Q Consensus 211 ~~~~Ly~~~-------~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 283 (311)
..+-||.++ .||+|.|+...|+..+|||+.+.-. +...+..|++|-++-+|..+.||.-|..+|.+
T Consensus 44 D~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~-------~~~rSr~G~lPFIELNGe~iaDS~~I~~~L~~ 116 (281)
T KOG4244|consen 44 DTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCS-------LKRRSRNGTLPFIELNGEHIADSDLIEDRLRK 116 (281)
T ss_pred CeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceecccc-------ceeeccCCCcceEEeCCeeccccHHHHHHHHH
Confidence 345677655 5899999999999999999977644 33557789999999999999999999999999
Q ss_pred hcCCCCCCCCCCHHHHHHHHHHHHH
Q psy13369 284 KYEGNRKLIASSPLQRALDRIFLET 308 (311)
Q Consensus 284 ~~~~~~~l~~~~~~~~a~~~~~~~~ 308 (311)
+++-+ ..+ +++++|+.+.+..+
T Consensus 117 hf~~~-~~L--~~e~~a~s~Al~rm 138 (281)
T KOG4244|consen 117 HFKIP-DDL--SAEQRAQSRALSRM 138 (281)
T ss_pred HcCCC-CCC--CHHHHHHHHHHHHH
Confidence 98876 324 34555555554443
No 186
>PRK10638 glutaredoxin 3; Provisional
Probab=97.86 E-value=4.4e-05 Score=54.77 Aligned_cols=58 Identities=10% Similarity=0.178 Sum_probs=43.9
Q ss_pred ceEEEeccCChHHHHHHHHHHhcCCCeEEeecccccccCCC-----------CCCceeccCCceeec-hhHhhH
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLAKKIPLTIHVPVTQYRLIGS-----------IFPTWLTTESETHWN-RTCSSY 82 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~~~~v~~~~~-----------~~p~~l~~~g~~l~E-~~I~~Y 82 (311)
+++||+.+.||||++++.+|+++|++|+.+ +++.... .+.|.+..||..+.. ..+..+
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~----dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~ 72 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEI----PIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYAL 72 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEE----ECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHH
Confidence 689999999999999999999999999888 5543210 134456677887777 666533
No 187
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=97.85 E-value=9e-06 Score=64.29 Aligned_cols=68 Identities=15% Similarity=0.211 Sum_probs=49.3
Q ss_pred cHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCCC
Q psy13369 137 TFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDPP 207 (311)
Q Consensus 137 ~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~ 207 (311)
..++..+.++.||+.|+++ +||+||++|.+|+++++++..+...... ..........||+|.+|.+++
T Consensus 65 ~~~~a~~~l~~l~~~L~~~--~~~~Gd~~t~~D~~~~~~l~~~~~~~~~-~~~l~~~~~~~pnL~~~~~ri 132 (137)
T cd03212 65 IYRDAKECLNLLSQRLGES--QFFFGDTPTSLDALVFGYLAPLLKAPLP-NNKLQNHLKQCPNLCRFCDRI 132 (137)
T ss_pred HHHHHHHHHHHHHHHHCCC--CcCCCCCCcHHHHHHHHHHHHHHhccCC-ChHHHHHHHHCcHHHHHHHHH
Confidence 5667888899999999754 7999999999999999998766532210 000012256799999888764
No 188
>PRK10824 glutaredoxin-4; Provisional
Probab=97.76 E-value=0.00014 Score=55.39 Aligned_cols=73 Identities=18% Similarity=0.111 Sum_probs=60.0
Q ss_pred CCceeeecc-----CCCchHHHHHHHHHhCCCCceEEEccCC-CCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHH
Q psy13369 210 EGKIRVYSM-----RFCPYAQRVHLILLAKKIPHDPVFINLN-EKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLD 282 (311)
Q Consensus 210 ~~~~~Ly~~-----~~~~~~~~~r~~L~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 282 (311)
..++.+|.. +.||||.++.-+|...|++|+.+.++-. .....+.+.+...+||.+..+|..+..+..+.....
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l~~ 92 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQ 92 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHHH
Confidence 456778876 5899999999999999999998887654 334456677888999999999999999988887543
No 189
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.73 E-value=0.00011 Score=51.53 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=42.7
Q ss_pred ceEEEeccCChHHHHHHHHHHhcCCCeEEeecccccccCC-------------CCCCceeccCCceeec---hhHhhHhh
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLAKKIPLTIHVPVTQYRLIG-------------SIFPTWLTTESETHWN---RTCSSYFE 84 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~~~~v~~~~-------------~~~p~~l~~~g~~l~E---~~I~~YL~ 84 (311)
+++||+..+||+|++++..|.+.|++|+.+ +++... ...|.++.+||..+.+ .-+.++|.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~i----di~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~~~~~~~~l~ 76 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWV----DIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPSAAQVKAKLQ 76 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEE----eCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCCHHHHHHHhh
Confidence 489999999999999999999999999876 443111 0134444567778777 34444543
No 190
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=97.70 E-value=9.4e-05 Score=51.69 Aligned_cols=57 Identities=16% Similarity=0.050 Sum_probs=44.2
Q ss_pred cCChHHHHHHHHHHhcCCCeEEeeccc-ccccCCCCCCceeccCCceeec-hhHhhHhhhh
Q psy13369 28 RFCPYAQRVHLILLAKKIPLTIHVPVT-QYRLIGSIFPTWLTTESETHWN-RTCSSYFEQK 86 (311)
Q Consensus 28 ~~sp~~~rv~~~L~~~gi~~e~~~~~~-~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~~~ 86 (311)
..||+|-++.++|...|++|+++..-. ...+.+ +-++++++|..+.+ ..|.+||.++
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~n~~~sp~g--kLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSNNPWRSPTG--KLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecCCCCCCCCC--ccCEEEECCEEecChHHHHHHHHHc
Confidence 357999999999999999998871110 112233 66789999999999 9999999864
No 191
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.60 E-value=0.00027 Score=56.33 Aligned_cols=70 Identities=13% Similarity=0.107 Sum_probs=57.5
Q ss_pred ceeeeccC------CCchHHHHHHHHHhCCCCceEEEccCC-CCchhHHhhCC----CCcccEEEeCCeeecCHHHHHHH
Q psy13369 212 KIRVYSMR------FCPYAQRVHLILLAKKIPHDPVFINLN-EKPEWYVSSVP----TGKVPALKSEGSILYESLIISDY 280 (311)
Q Consensus 212 ~~~Ly~~~------~~~~~~~~r~~L~~~gi~~~~~~v~~~-~~~~~~~~~~p----~~~vP~l~~~~~~l~es~aI~~y 280 (311)
+++||... .+|+|.+++.+|..++|+|+.+.|+.. ...+++.+... ...+|.|..+|..+.....+.+-
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 36789888 899999999999999999999999876 33455655544 37899999999999988888774
Q ss_pred H
Q psy13369 281 L 281 (311)
Q Consensus 281 L 281 (311)
-
T Consensus 81 ~ 81 (147)
T cd03031 81 N 81 (147)
T ss_pred H
Confidence 3
No 192
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.60 E-value=0.00022 Score=66.84 Aligned_cols=70 Identities=14% Similarity=0.194 Sum_probs=56.1
Q ss_pred CCceeeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHh---------hCCCCcccEEEeCCeeecCHHHHHH
Q psy13369 210 EGKIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVS---------SVPTGKVPALKSEGSILYESLIISD 279 (311)
Q Consensus 210 ~~~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~---------~~p~~~vP~l~~~~~~l~es~aI~~ 279 (311)
|.++++|..+.||+|.+++-+|..+||+|+.+.++-.....++.+ ..+...||++..+|..+..-..+..
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 346899999999999999999999999999999984433333322 2467789999999998888777765
No 193
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.59 E-value=0.0001 Score=51.42 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=29.5
Q ss_pred CceEEEeccCChHHHHHHHHHHhcCCCeEEe
Q psy13369 20 GKLRVYSMRFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 20 ~~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
+.++||+.+.||+|++++.+|+++||+|+.+
T Consensus 1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~ 31 (73)
T cd03027 1 GRVTIYSRLGCEDCTAVRLFLREKGLPYVEI 31 (73)
T ss_pred CEEEEEecCCChhHHHHHHHHHHCCCceEEE
Confidence 4689999999999999999999999999888
No 194
>KOG3027|consensus
Probab=97.57 E-value=0.0011 Score=54.57 Aligned_cols=153 Identities=14% Similarity=0.173 Sum_probs=96.9
Q ss_pred CCceEEEeccCChHHHHHHHHHHhcCCCeEEeec--ccccccCCCCCCceeccCCceeec-hhHhhHhhhhhccCCCCCC
Q psy13369 19 EGKLRVYSMRFCPYAQRVHLILLAKKIPLTIHVP--VTQYRLIGSIFPTWLTTESETHWN-RTCSSYFEQKKRREREMKR 95 (311)
Q Consensus 19 ~~~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~--~~~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~~~~~~~~~~l~ 95 (311)
...+-|+... -|-.|--+|..-++||.++.. ..-+.|.+ +.+++..|..+++| ..|..+.+.+-- .-++++
T Consensus 26 ~eQiLl~d~a---scLAVqtfLrMcnLPf~v~~~~NaefmSP~G--~vPllr~g~~~~aef~pIV~fVeak~~-~l~s~l 99 (257)
T KOG3027|consen 26 AEQILLPDNA---SCLAVQTFLRMCNLPFNVRQRANAEFMSPGG--KVPLLRIGKTLFAEFEPIVDFVEAKGV-TLTSWL 99 (257)
T ss_pred ccccccccch---hHHHHHHHHHHcCCCceeeecCCccccCCCC--CCceeeecchhhhhhhHHHHHHHHhcc-chhhhh
Confidence 3456666533 467888999999999977632 11344566 78889899899999 999999998742 111334
Q ss_pred CCCchhHHHhHhHHHHhhchhhhchh--HH-----HHhh---hc------------------------------CCCCCc
Q psy13369 96 SQDPPTQEGKLRVYSMRFCPYAQRLS--PA-----FYKC---MM------------------------------GEGINP 135 (311)
Q Consensus 96 p~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~---~~------------------------------~~~~~~ 135 (311)
.++ .++.+|..++.+.+.+...- .. .+.. .+ +....+
T Consensus 100 sE~---qkadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~D 176 (257)
T KOG3027|consen 100 SED---QKADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMD 176 (257)
T ss_pred hhH---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHH
Confidence 333 57777777766555331100 00 0000 00 000111
Q ss_pred ccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHhHhh
Q psy13369 136 STFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERLPSL 182 (311)
Q Consensus 136 ~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~~ 182 (311)
+..+++....+.|+..|+. .+||.|++||=+|..+|..+..+-..
T Consensus 177 qVie~vdkc~~aLsa~L~~--q~yf~g~~P~elDAlvFGHlytilTt 221 (257)
T KOG3027|consen 177 QVIEQVDKCCRALSAQLGS--QPYFTGDQPTELDALVFGHLYTILTT 221 (257)
T ss_pred HHHHHHHHHHHHHHHHhcC--CCccCCCCccHHHHHHHhhhHHhhhh
Confidence 2346777778888888864 48999999999999998887655443
No 195
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.55 E-value=0.00036 Score=50.23 Aligned_cols=64 Identities=9% Similarity=0.130 Sum_probs=50.3
Q ss_pred ceEEEeccCChHHHHHHHHHHh-----cCCCeEEeecccccccCC----------C---CCCceeccCCceeec-hhHhh
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLA-----KKIPLTIHVPVTQYRLIG----------S---IFPTWLTTESETHWN-RTCSS 81 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~-----~gi~~e~~~~~~~v~~~~----------~---~~p~~l~~~g~~l~E-~~I~~ 81 (311)
++++|+.++||+|.+++-+|+. .|++|+.+ +++-.+ + ...|.+..||..+.. ..|.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~i----di~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~ 77 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYV----DIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEA 77 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEE----ECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHH
Confidence 6899999999999999999999 89999887 554321 0 133445678888888 88888
Q ss_pred Hhhhhhc
Q psy13369 82 YFEQKKR 88 (311)
Q Consensus 82 YL~~~~~ 88 (311)
++.+.++
T Consensus 78 ~~~~~~~ 84 (85)
T PRK11200 78 YVKENLG 84 (85)
T ss_pred HHHHhcc
Confidence 9888774
No 196
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.47 E-value=0.00036 Score=47.78 Aligned_cols=56 Identities=20% Similarity=0.151 Sum_probs=41.6
Q ss_pred ceEEEeccCChHHHHHHHHHHhcCCCeEEeecccccccCC-----------CCCCceeccCCceeec-hhHh
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLAKKIPLTIHVPVTQYRLIG-----------SIFPTWLTTESETHWN-RTCS 80 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~~~~v~~~~-----------~~~p~~l~~~g~~l~E-~~I~ 80 (311)
+++||+...||+|++++.+|..+|++|+.+ +++... ..+.|.+..+|..+.+ ..|.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~----di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~ 68 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEI----DILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLK 68 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEE----ECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHH
Confidence 478999999999999999999999999876 442211 0134456677777777 5554
No 197
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.47 E-value=0.00033 Score=48.21 Aligned_cols=30 Identities=27% Similarity=0.521 Sum_probs=28.3
Q ss_pred ceEEEeccCChHHHHHHHHHHhcCCCeEEe
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
++++|+..+||+|++++.+|.++|++|+.+
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~ 30 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEV 30 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEE
Confidence 479999999999999999999999999877
No 198
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.44 E-value=0.00022 Score=50.93 Aligned_cols=30 Identities=7% Similarity=0.265 Sum_probs=28.9
Q ss_pred ceEEEeccCChHHHHHHHHHHhcCCCeEEe
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
+++||+...||+|.+++-+|.++||+|+.+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~i 31 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMI 31 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEE
Confidence 589999999999999999999999999988
No 199
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.41 E-value=0.00074 Score=47.09 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=42.1
Q ss_pred ceEEEeccCChHHHHHHHHHHhcCCCeEEeecccccccC-----------CCC-CCceeccCCceeec-hhHhhH
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLAKKIPLTIHVPVTQYRLI-----------GSI-FPTWLTTESETHWN-RTCSSY 82 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~~~~v~~~-----------~~~-~p~~l~~~g~~l~E-~~I~~Y 82 (311)
+++||+.+.||+|.+++-+|..+||+|+.+ .++.. +.. ..|.+..+|..+.. ..+.++
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i----~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~ 71 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEI----DVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYAL 71 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEE----ECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHH
Confidence 489999999999999999999999999887 55321 101 34445666777766 555543
No 200
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.39 E-value=0.00053 Score=47.24 Aligned_cols=30 Identities=27% Similarity=0.530 Sum_probs=28.1
Q ss_pred ceEEEeccCChHHHHHHHHHHhcCCCeEEe
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
+++||+..+||+|++++..|.++|++|+.+
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~v 30 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEI 30 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEE
Confidence 479999999999999999999999999877
No 201
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.28 E-value=0.0004 Score=48.26 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=27.9
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEe
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
++||+.+.||+|++++-+|+++|++|+.+
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~ 29 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEI 29 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEE
Confidence 58999999999999999999999999888
No 202
>KOG1752|consensus
Probab=97.26 E-value=0.0029 Score=47.19 Aligned_cols=74 Identities=16% Similarity=0.207 Sum_probs=62.1
Q ss_pred CCCceeeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCchhH----HhhCCCCcccEEEeCCeeecCHHHHHHHHH
Q psy13369 209 QEGKIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWY----VSSVPTGKVPALKSEGSILYESLIISDYLD 282 (311)
Q Consensus 209 ~~~~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~----~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 282 (311)
...++.+|....||+|.+++-+|...|+.+..+.+|......++ .+.....+||.+..+|..+..+..++.+=.
T Consensus 12 ~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh~ 89 (104)
T KOG1752|consen 12 SENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALHK 89 (104)
T ss_pred hcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHHH
Confidence 35577899999999999999999999999999999987544433 455777899999999999999999887743
No 203
>PTZ00062 glutaredoxin; Provisional
Probab=97.20 E-value=0.0015 Score=55.09 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=58.0
Q ss_pred CCceeeecc-----CCCchHHHHHHHHHhCCCCceEEEccCC-CCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHH
Q psy13369 210 EGKIRVYSM-----RFCPYAQRVHLILLAKKIPHDPVFINLN-EKPEWYVSSVPTGKVPALKSEGSILYESLIISDYL 281 (311)
Q Consensus 210 ~~~~~Ly~~-----~~~~~~~~~r~~L~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 281 (311)
..++.||.. +.||+|+++.-+|...|++|+...+..+ ...+.+.+.+....+|.+..+|..+.....+.+..
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~l~ 189 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKELY 189 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHH
Confidence 445677755 6899999999999999999998888755 23445566778889999999999998888777643
No 204
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.20 E-value=0.00059 Score=50.69 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=31.5
Q ss_pred CCCCceEEEeccCChHHHHHHHHHHhcCCCeEEe
Q psy13369 17 TQEGKLRVYSMRFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 17 ~~~~~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
..++++++|+.++||||.++.-+|...|++|+.+
T Consensus 5 i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~v 38 (99)
T TIGR02189 5 VSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVH 38 (99)
T ss_pred hccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEE
Confidence 3468899999999999999999999999999887
No 205
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.10 E-value=0.00074 Score=45.02 Aligned_cols=29 Identities=31% Similarity=0.511 Sum_probs=27.8
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEe
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
+++|+.+.||+|.+++-+|..+|++|+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~ 29 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEV 29 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEc
Confidence 68999999999999999999999999888
No 206
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=97.04 E-value=0.0033 Score=43.67 Aligned_cols=55 Identities=29% Similarity=0.253 Sum_probs=47.2
Q ss_pred CCchHHHHHHHHHhCCCC---ceEEEccCCCCchhHHhhCCCCcccEEEe-CCeeecCHHHHHHHH
Q psy13369 220 FCPYAQRVHLILLAKKIP---HDPVFINLNEKPEWYVSSVPTGKVPALKS-EGSILYESLIISDYL 281 (311)
Q Consensus 220 ~~~~~~~~r~~L~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~vP~l~~-~~~~l~es~aI~~yL 281 (311)
.++-|-++.++|...+.+ ++++.-+-. ..+|.|++|+|.+ +++.+++-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~-------~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNP-------WLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCC-------CcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 578999999999999999 666665422 2578999999998 999999999999998
No 207
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.03 E-value=0.0022 Score=46.27 Aligned_cols=63 Identities=8% Similarity=0.101 Sum_probs=46.8
Q ss_pred eEEEeccCChHHHHHHHHHHhcC-----CCeEEeecccccccCC----------C---CCCceeccCCceeec-hhHhhH
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKK-----IPLTIHVPVTQYRLIG----------S---IFPTWLTTESETHWN-RTCSSY 82 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~g-----i~~e~~~~~~~v~~~~----------~---~~p~~l~~~g~~l~E-~~I~~Y 82 (311)
+++|+.++||||.+++-+|..++ ++|+.+ .++... + ...|.+..||..+.. ..|.+|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~i----di~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~ 77 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYI----DIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQL 77 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEE----ECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHH
Confidence 68999999999999999999985 567665 443211 0 144556678888888 888888
Q ss_pred hhhhhc
Q psy13369 83 FEQKKR 88 (311)
Q Consensus 83 L~~~~~ 88 (311)
+.++++
T Consensus 78 ~~~~~~ 83 (86)
T TIGR02183 78 VKENFD 83 (86)
T ss_pred HHhccc
Confidence 888763
No 208
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.85 E-value=0.0015 Score=46.05 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=40.5
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEeecccccccCC-----------CCCCceeccCCceeec-hhHhhH
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIHVPVTQYRLIG-----------SIFPTWLTTESETHWN-RTCSSY 82 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~~~~v~~~~-----------~~~p~~l~~~g~~l~E-~~I~~Y 82 (311)
+++|+.+.||+|.+++-+|+.+|++|+.+ .++... ....|.+..+|..+.. ..+..+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~----di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~ 69 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEI----RVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYAL 69 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEE----EecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHH
Confidence 58999999999999999999999999888 554221 0123335556666666 555433
No 209
>PHA03050 glutaredoxin; Provisional
Probab=96.79 E-value=0.0022 Score=48.43 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=30.7
Q ss_pred CCCCceEEEeccCChHHHHHHHHHHhcCC---CeEEe
Q psy13369 17 TQEGKLRVYSMRFCPYAQRVHLILLAKKI---PLTIH 50 (311)
Q Consensus 17 ~~~~~~~Ly~~~~sp~~~rv~~~L~~~gi---~~e~~ 50 (311)
...+++++|+..+||||.|++-+|..+|+ +|+.+
T Consensus 10 i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i 46 (108)
T PHA03050 10 LANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIV 46 (108)
T ss_pred hccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEE
Confidence 34678999999999999999999999999 78777
No 210
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=96.74 E-value=0.0076 Score=44.00 Aligned_cols=68 Identities=26% Similarity=0.281 Sum_probs=52.7
Q ss_pred eeeeccCCCc------hHHHHHHHHHhCCCCceEEEccCC-CCchhHHhhCC----CCcccEEEeCCeeecCHHHHHHH
Q psy13369 213 IRVYSMRFCP------YAQRVHLILLAKKIPHDPVFINLN-EKPEWYVSSVP----TGKVPALKSEGSILYESLIISDY 280 (311)
Q Consensus 213 ~~Ly~~~~~~------~~~~~r~~L~~~gi~~~~~~v~~~-~~~~~~~~~~p----~~~vP~l~~~~~~l~es~aI~~y 280 (311)
+++|....++ .|++++.+|..+||+|+.+.|+.. ....++.+..+ ...+|.|..++..+.....+..-
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l 80 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEA 80 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHH
Confidence 5677765554 678999999999999999999877 34455555543 47899999999999998776653
No 211
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.74 E-value=0.0047 Score=41.96 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=42.2
Q ss_pred ceeeeccCCCchHHHHHHHHHhC-----CCCceEEEccCCCCchhHHhhCCCCcccEEEeCCeeec
Q psy13369 212 KIRVYSMRFCPYAQRVHLILLAK-----KIPHDPVFINLNEKPEWYVSSVPTGKVPALKSEGSILY 272 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~ 272 (311)
++++|+.++||+|.+++-+|.+. ++++..+.++-. .++.+......+|++..+|..++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~---~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEF---PDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccC---HhHHHHcCCcccCEEEECCEEEE
Confidence 46899999999999999998865 455555544322 33555666678999998887654
No 212
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.73 E-value=0.0067 Score=42.89 Aligned_cols=61 Identities=11% Similarity=0.152 Sum_probs=43.9
Q ss_pred ceEEEeccCChHHHHHHHHHHhcCCCeEEeecccccccCCC--------------CCCceeccCCceeec-hhHhhHhhh
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLAKKIPLTIHVPVTQYRLIGS--------------IFPTWLTTESETHWN-RTCSSYFEQ 85 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~~~~v~~~~~--------------~~p~~l~~~g~~l~E-~~I~~YL~~ 85 (311)
++++|+..+||+|.+++-+|...+++|+.+ .++.... ..-|.+..+|..+.. ..+.++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVV----ELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEE----EEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 478999999999999999999999999877 5543220 122335566777777 666655543
No 213
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0033 Score=44.65 Aligned_cols=30 Identities=23% Similarity=0.458 Sum_probs=28.5
Q ss_pred ceEEEeccCChHHHHHHHHHHhcCCCeEEe
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
.+++|+.+.||||.++.-+|..+|++|+.+
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i 31 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEI 31 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEE
Confidence 589999999999999999999999999886
No 214
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.62 E-value=0.0033 Score=46.43 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=30.7
Q ss_pred CCCCceEEEec-----cCChHHHHHHHHHHhcCCCeEEe
Q psy13369 17 TQEGKLRVYSM-----RFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 17 ~~~~~~~Ly~~-----~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
..++++.+|+. ++||||.+++-+|..+|++|+.+
T Consensus 9 i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~ 47 (97)
T TIGR00365 9 IKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYV 47 (97)
T ss_pred hccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEE
Confidence 45788999976 88999999999999999999877
No 215
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=96.60 E-value=0.0072 Score=45.36 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=50.5
Q ss_pred HHhHhHHHHhhchhhhchhHH--HHhhhcC---CCCCcccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHH
Q psy13369 103 EGKLRVYSMRFCPYAQRLSPA--FYKCMMG---EGINPSTFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLE 177 (311)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~ 177 (311)
|++.|+...++.+.+.++-.- ....+.+ .+..++..+.+.+.+...+..|.. +++||+| .+|+||..+.+++.
T Consensus 5 RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~-g~~~LFG-ewsIAD~dlA~ml~ 82 (117)
T PF14834_consen 5 RARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLAD-GGPNLFG-EWSIADADLALMLN 82 (117)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT---SSTTS-S--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhcc-CCCCccc-cchHHHHHHHHHHH
Confidence 888888888877755443221 1111222 223344677888888889988864 5689997 59999999999999
Q ss_pred HhHhhh
Q psy13369 178 RLPSLA 183 (311)
Q Consensus 178 ~~~~~~ 183 (311)
|+...|
T Consensus 83 Rl~~~g 88 (117)
T PF14834_consen 83 RLVTYG 88 (117)
T ss_dssp HHHTTT
T ss_pred HHHHcC
Confidence 998766
No 216
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.59 E-value=0.0031 Score=47.86 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=28.0
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEe
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
++||+.+.||+|++++-.|+.+|++|+.+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~i 29 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAI 29 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEe
Confidence 68999999999999999999999999988
No 217
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.011 Score=40.60 Aligned_cols=63 Identities=19% Similarity=0.229 Sum_probs=49.0
Q ss_pred CCceeeeccCCCchHHHHHHHHHhCCCCceEEEccCC-----------CCchhHHh--hCCCCcccEEE-eCCeeec
Q psy13369 210 EGKIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN-----------EKPEWYVS--SVPTGKVPALK-SEGSILY 272 (311)
Q Consensus 210 ~~~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~-----------~~~~~~~~--~~p~~~vP~l~-~~~~~l~ 272 (311)
|.+++||+.+.||-|....-.|+..+++|+.+.+.-. +..++|-+ .|+.--+|+|. +||.++.
T Consensus 1 mskp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 1 MSKPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred CCCceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 3567999999999999999999999999999888533 34555644 45666799999 7776544
No 218
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.40 E-value=0.0045 Score=46.42 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=27.9
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEe
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
+++|+.+.||+|++++-.|..+|++|+.+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~i 29 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFI 29 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEE
Confidence 58999999999999999999999999988
No 219
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.39 E-value=0.003 Score=47.94 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=31.6
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCC
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN 246 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~ 246 (311)
+++|+.+.|++|++++-+|..+|++|+.+.+...
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~ 34 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEE 34 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCC
Confidence 5799999999999999999999999999998755
No 220
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.11 E-value=0.01 Score=43.11 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=30.4
Q ss_pred CCCCceEEEec-----cCChHHHHHHHHHHhcCCCeEEe
Q psy13369 17 TQEGKLRVYSM-----RFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 17 ~~~~~~~Ly~~-----~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
..++++++|+. ++||||.+++-+|..+|++|+.+
T Consensus 5 i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~i 43 (90)
T cd03028 5 IKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTF 43 (90)
T ss_pred hccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEE
Confidence 34678999976 69999999999999999999888
No 221
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=96.08 E-value=0.0084 Score=46.92 Aligned_cols=29 Identities=17% Similarity=0.384 Sum_probs=28.2
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEe
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
+++|+.+.||+|++++-.|..+||+|+.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~i 30 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTER 30 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEe
Confidence 78999999999999999999999999988
No 222
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=95.99 E-value=0.014 Score=43.60 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=31.3
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCC
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN 246 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~ 246 (311)
+++|+.+.|++|++++-+|..+|++|+.+.+.-.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~ 34 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKE 34 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccC
Confidence 4799999999999999999999999999998654
No 223
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=95.97 E-value=0.011 Score=45.07 Aligned_cols=29 Identities=17% Similarity=0.440 Sum_probs=28.2
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEe
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
+++|+.+.||+|++++-.|+.+|++|+.+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~i 30 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEER 30 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEE
Confidence 78999999999999999999999999998
No 224
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=95.89 E-value=0.021 Score=40.37 Aligned_cols=29 Identities=24% Similarity=0.599 Sum_probs=27.0
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCC--eEEe
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIP--LTIH 50 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~--~e~~ 50 (311)
+++|+..+||+|++++-+|...+++ |+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~ 31 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVV 31 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEE
Confidence 5799999999999999999999999 8777
No 225
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=95.86 E-value=0.012 Score=44.99 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=27.9
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEe
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
++||+.+.||+|++++-.|.++|++|+.+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~i 29 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFI 29 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEE
Confidence 58999999999999999999999999988
No 226
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=95.82 E-value=0.017 Score=45.22 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=31.6
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCC
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN 246 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~ 246 (311)
+++|+.+.|++|++++-+|..+||+|+.+.+.-.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCC
Confidence 7899999999999999999999999999998644
No 227
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=95.55 E-value=0.026 Score=43.00 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=31.5
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCC
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN 246 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~ 246 (311)
+++|+.+.|+.|++++-.|..+|++|+.+.+.-.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCC
Confidence 7899999999999999999999999999998644
No 228
>KOG3028|consensus
Probab=95.42 E-value=0.48 Score=42.00 Aligned_cols=150 Identities=15% Similarity=0.223 Sum_probs=84.2
Q ss_pred CChHHHHHHHHHHhcCCCeEEeec-ccccccCCCCCCceeccCCceeec-hhHhhHhhhhhccCCCCCCCCCchhHHHhH
Q psy13369 29 FCPYAQRVHLILLAKKIPLTIHVP-VTQYRLIGSIFPTWLTTESETHWN-RTCSSYFEQKKRREREMKRSQDPPTQEGKL 106 (311)
Q Consensus 29 ~sp~~~rv~~~L~~~gi~~e~~~~-~~~v~~~~~~~p~~l~~~g~~l~E-~~I~~YL~~~~~~~~~~l~p~~~~~~~~~~ 106 (311)
.||-|-.+.+++...+-+.+++.. -.+..+.+ +-|-+..++|..+.. .-|..||...-. ...+-+......++..
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN~~~s~sg-~LP~l~~~ng~~va~~~~iv~~L~k~~~--ky~~d~dl~~kq~a~~ 92 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSNPWRSPSG-KLPYLITDNGTKVAGPVKIVQFLKKNTK--KYNLDADLSAKQLADT 92 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecCCCCCCCC-CCCeEEecCCceeccHHHHHHHHHHhcc--cCCcCccHHHHHHHHH
Confidence 478999999999999955544410 00112222 234444566689999 889989987421 1011121111134444
Q ss_pred hHHHHhhchhhhchh---------------HHHHh-hh-----------------------cCCCC--CcccHhHHHHhH
Q psy13369 107 RVYSMRFCPYAQRLS---------------PAFYK-CM-----------------------MGEGI--NPSTFGEIVTAL 145 (311)
Q Consensus 107 ~~~~~~~~~~~~~~~---------------~~~~~-~~-----------------------~~~~~--~~~~~~~~~~~l 145 (311)
..|+.++.+.+.+.. ..++. .+ .+... ..+....-.+++
T Consensus 93 ~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~~Aska~ 172 (313)
T KOG3028|consen 93 LAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYKDASKAL 172 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHHHHHHHH
Confidence 455544444321111 11111 00 00000 111234566778
Q ss_pred HHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHhHhhh
Q psy13369 146 EPLEAELKARGTPYLSGSKPGMVDYMIWPWLERLPSLA 183 (311)
Q Consensus 146 ~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~~~ 183 (311)
+.|++.|+++ .|++||++|--|+.++.++..+....
T Consensus 173 ~~LS~~Lgs~--kffFgd~psslDa~lfs~la~~~~~~ 208 (313)
T KOG3028|consen 173 NLLSTLLGSK--KFFFGDKPSSLDALLFSYLAILLQVA 208 (313)
T ss_pred HHHHHHhcCc--eEeeCCCCchHHHHHHHHHHHHHhcc
Confidence 8888888755 69999999999999999988755544
No 229
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.35 E-value=0.092 Score=36.72 Aligned_cols=56 Identities=14% Similarity=0.181 Sum_probs=41.6
Q ss_pred ceeeeccCCCchHHHH----HHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEEeCCeeec
Q psy13369 212 KIRVYSMRFCPYAQRV----HLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALKSEGSILY 272 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~----r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~ 272 (311)
.+.+|. ++||.|..+ .-++.+.|.+++.+.++- .++ ........+|+|+.+|..+.
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~---~~~-a~~~~v~~vPti~i~G~~~~ 61 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD---MNE-ILEAGVTATPGVAVDGELVI 61 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC---HHH-HHHcCCCcCCEEEECCEEEE
Confidence 467776 899999988 668888999988888872 122 33356678999998876553
No 230
>PRK12559 transcriptional regulator Spx; Provisional
Probab=95.28 E-value=0.028 Score=43.95 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=28.1
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEe
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
+++|+.+.|+.|+++.-.|..+|++|+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~ 30 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEK 30 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEE
Confidence 78999999999999999999999999988
No 231
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=95.26 E-value=0.028 Score=42.15 Aligned_cols=29 Identities=21% Similarity=0.493 Sum_probs=28.0
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEe
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
|++|+.+.|+-|++++-.|.++|++|+.+
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~ 29 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFH 29 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEE
Confidence 68999999999999999999999999988
No 232
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=95.26 E-value=0.025 Score=43.27 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=31.1
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCC
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN 246 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~ 246 (311)
+++|+.+.|++|++++-+|..+|++|+.+.+.-.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~ 34 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGED 34 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCC
Confidence 4799999999999999999999999999988644
No 233
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=95.25 E-value=0.041 Score=43.06 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=31.8
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCC
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN 246 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~ 246 (311)
+++|+.+.|+.|++++-.|...|++|+.+.+...
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCC
Confidence 7899999999999999999999999999998744
No 234
>PRK12559 transcriptional regulator Spx; Provisional
Probab=95.25 E-value=0.039 Score=43.13 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=31.7
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCC
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN 246 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~ 246 (311)
+++|+.+.|+.|++++-+|..+|++|+.+.+...
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCC
Confidence 7899999999999999999999999999988654
No 235
>PRK10824 glutaredoxin-4; Provisional
Probab=95.24 E-value=0.03 Score=42.59 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=30.3
Q ss_pred CCCCceEEEec-----cCChHHHHHHHHHHhcCCCeEEe
Q psy13369 17 TQEGKLRVYSM-----RFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 17 ~~~~~~~Ly~~-----~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
..++++.+|+. ++||||.++.-+|...|++|+.+
T Consensus 12 I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~i 50 (115)
T PRK10824 12 IAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYV 50 (115)
T ss_pred HhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEE
Confidence 45688999987 59999999999999999999877
No 236
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=95.01 E-value=0.037 Score=42.10 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=28.2
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEe
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
++||+.+.|+-|++++-.|+++|++|+++
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~ 30 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVR 30 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEe
Confidence 78999999999999999999999999988
No 237
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=94.96 E-value=0.054 Score=40.59 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=31.2
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCC
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN 246 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~ 246 (311)
+++|+.+.|+.|++++-.|...|++|+.+.+.-.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~ 34 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKD 34 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccC
Confidence 5799999999999999999999999999988644
No 238
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=94.94 E-value=0.039 Score=43.17 Aligned_cols=29 Identities=14% Similarity=0.423 Sum_probs=28.2
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEe
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
+++|+.+.|+.|++++-.|..+||+|+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~ 30 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQ 30 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEE
Confidence 78999999999999999999999999998
No 239
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=94.81 E-value=0.11 Score=36.35 Aligned_cols=57 Identities=23% Similarity=0.363 Sum_probs=41.3
Q ss_pred ceeeeccCCCchHHHHHHHHHh----CCCCceEEEccCCCCchhHHhhCCCCcccEEEeCCe
Q psy13369 212 KIRVYSMRFCPYAQRVHLILLA----KKIPHDPVFINLNEKPEWYVSSVPTGKVPALKSEGS 269 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~ 269 (311)
++++|+.++|++|..+.-.|+. .+..+....|+..+.. +..+......+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENP-QKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCH-HHHHHcCCccCCEEEECCE
Confidence 4789999999999988888764 3444666677765433 3445566778999997664
No 240
>PRK10026 arsenate reductase; Provisional
Probab=94.78 E-value=0.044 Score=43.32 Aligned_cols=35 Identities=9% Similarity=0.105 Sum_probs=32.1
Q ss_pred CCceeeeccCCCchHHHHHHHHHhCCCCceEEEcc
Q psy13369 210 EGKIRVYSMRFCPYAQRVHLILLAKKIPHDPVFIN 244 (311)
Q Consensus 210 ~~~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~ 244 (311)
|+++++|+.+.|.-|++++-+|...|++|+.+.+.
T Consensus 1 m~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~ 35 (141)
T PRK10026 1 MSNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYL 35 (141)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeee
Confidence 35789999999999999999999999999998874
No 241
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=94.65 E-value=0.072 Score=40.49 Aligned_cols=34 Identities=18% Similarity=0.088 Sum_probs=31.4
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCC
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN 246 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~ 246 (311)
+++|+.+.|+-|++++-+|...|++|+.+.+.-.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~ 35 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLLTE 35 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcC
Confidence 6899999999999999999999999999988644
No 242
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=94.62 E-value=0.083 Score=40.38 Aligned_cols=35 Identities=14% Similarity=0.087 Sum_probs=31.9
Q ss_pred ceeeeccCCCchHHHHHHHHHhCCCCceEEEccCC
Q psy13369 212 KIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN 246 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~ 246 (311)
.+++|+.+.|.-|++++-.|+..||+|+.+.+.-.
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~ 36 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKT 36 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecC
Confidence 58999999999999999999999999998877644
No 243
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=94.57 E-value=0.14 Score=36.33 Aligned_cols=55 Identities=20% Similarity=0.410 Sum_probs=41.1
Q ss_pred ceeeeccCCCchHHHHHHHHHhCC--CCceEEEccCCCCchhHHhhCCCCcccEEEeCC
Q psy13369 212 KIRVYSMRFCPYAQRVHLILLAKK--IPHDPVFINLNEKPEWYVSSVPTGKVPALKSEG 268 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L~~~g--i~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~ 268 (311)
+++||+.+.|+.|..+...|.... .+++...||..+..+ +..... -.||||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~-l~~~Y~-~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE-LFEKYG-YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH-HHHHSC-TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHH-HHHHhc-CCCCEEEEcC
Confidence 478999999999999999999654 457777777775444 555444 4899999776
No 244
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=94.51 E-value=0.049 Score=51.15 Aligned_cols=30 Identities=27% Similarity=0.544 Sum_probs=28.8
Q ss_pred ceEEEeccCChHHHHHHHHHHhcCCCeEEe
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
++++|+.++||+|.++.-+|..+||+|+.+
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~gi~~~~i 32 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGANDIPFTQI 32 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCCeEEE
Confidence 589999999999999999999999999877
No 245
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=94.16 E-value=0.14 Score=32.82 Aligned_cols=53 Identities=21% Similarity=0.404 Sum_probs=36.9
Q ss_pred eeeeccCCCchHHHHHHHHH-----hCCCCceEEEccCCCCchhHHhhCCCCcccEEE
Q psy13369 213 IRVYSMRFCPYAQRVHLILL-----AKKIPHDPVFINLNEKPEWYVSSVPTGKVPALK 265 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 265 (311)
+.+|+..+|+.|.+.+..+. ..++.+..+.++...........++...+|+++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 58 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLV 58 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEE
Confidence 35678889999999999999 445555555554443322223567889999999
No 246
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=94.15 E-value=0.19 Score=37.55 Aligned_cols=69 Identities=16% Similarity=0.283 Sum_probs=50.7
Q ss_pred CCchHHHHHHHHHhC---CCCceEEEccCCCCchhHHhhC--CCCcccEEE-eCCe-------------eecCHHHHHHH
Q psy13369 220 FCPYAQRVHLILLAK---KIPHDPVFINLNEKPEWYVSSV--PTGKVPALK-SEGS-------------ILYESLIISDY 280 (311)
Q Consensus 220 ~~~~~~~~r~~L~~~---gi~~~~~~v~~~~~~~~~~~~~--p~~~vP~l~-~~~~-------------~l~es~aI~~y 280 (311)
.||.|..+.=+|... .-..+++.|++..-+.+..+.- .+...|+|| .+|. .|.++..|++|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 477777777666653 3357788888887666666643 256799999 5554 69999999999
Q ss_pred HHHhcCCC
Q psy13369 281 LDEKYEGN 288 (311)
Q Consensus 281 L~~~~~~~ 288 (311)
|+++|+-+
T Consensus 103 La~r~g~p 110 (112)
T PF11287_consen 103 LAERHGFP 110 (112)
T ss_pred HHHHcCCC
Confidence 99999854
No 247
>KOG3027|consensus
Probab=94.14 E-value=0.3 Score=40.61 Aligned_cols=80 Identities=23% Similarity=0.208 Sum_probs=61.8
Q ss_pred chHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHHhcCCCCCCC-CCCHHHHH
Q psy13369 222 PYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDEKYEGNRKLI-ASSPLQRA 300 (311)
Q Consensus 222 ~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~~~~l~-~~~~~~~a 300 (311)
..|-.|...|...++||.++.-. ..+| .+|.|+||.|..+.+.++|-.+|..+.+.+-- .|- ..+..+++
T Consensus 35 ascLAVqtfLrMcnLPf~v~~~~----Naef--mSP~G~vPllr~g~~~~aef~pIV~fVeak~~---~l~s~lsE~qka 105 (257)
T KOG3027|consen 35 ASCLAVQTFLRMCNLPFNVRQRA----NAEF--MSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGV---TLTSWLSEDQKA 105 (257)
T ss_pred hhHHHHHHHHHHcCCCceeeecC----Cccc--cCCCCCCceeeecchhhhhhhHHHHHHHHhcc---chhhhhhhHHHH
Confidence 45889999999999999987654 2334 56999999999999999999999999988742 221 23566788
Q ss_pred HHHHHHHHhc
Q psy13369 301 LDRIFLETFG 310 (311)
Q Consensus 301 ~~~~~~~~~~ 310 (311)
.++..+++++
T Consensus 106 dmra~vslVe 115 (257)
T KOG3027|consen 106 DMRAYVSLVE 115 (257)
T ss_pred HHHHHHHHHH
Confidence 8877776653
No 248
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=93.76 E-value=0.15 Score=39.52 Aligned_cols=35 Identities=20% Similarity=0.070 Sum_probs=31.7
Q ss_pred ceeeeccCCCchHHHHHHHHHhCCCCceEEEccCC
Q psy13369 212 KIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN 246 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~ 246 (311)
.+++|+.+.|.-|++++-.|.+.|++|+.+.+.-.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~ 36 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKE 36 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCC
Confidence 47899999999999999999999999999987543
No 249
>KOG2903|consensus
Probab=93.76 E-value=0.26 Score=42.50 Aligned_cols=96 Identities=24% Similarity=0.251 Sum_probs=64.0
Q ss_pred CceeeeccCCCchHHHHHHHHHhCCCC----ceEEEccCCCCc------------------------------hhHHhhC
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILLAKKIP----HDPVFINLNEKP------------------------------EWYVSSV 256 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~~~gi~----~~~~~v~~~~~~------------------------------~~~~~~~ 256 (311)
..+-||..-.||+++|..+++..||+. +..+..-.+++. +-|....
T Consensus 36 gryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~ 115 (319)
T KOG2903|consen 36 GRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIAS 115 (319)
T ss_pred ceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcC
Confidence 678899999999999999999999985 222222011111 1111122
Q ss_pred C----CCcccEEEeCC---eeecCHHHHHHHHHH---hc------CCCCCCCCCCHHHHHHHHHHHHHh
Q psy13369 257 P----TGKVPALKSEG---SILYESLIISDYLDE---KY------EGNRKLIASSPLQRALDRIFLETF 309 (311)
Q Consensus 257 p----~~~vP~l~~~~---~~l~es~aI~~yL~~---~~------~~~~~l~~~~~~~~a~~~~~~~~~ 309 (311)
| .-+||||-+-. .+--||..|++-+.+ .+ +.- .|+|. .-+++++.|.+|+
T Consensus 116 p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~l-DL~P~--~L~~~Ide~N~wv 181 (319)
T KOG2903|consen 116 PNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVL-DLYPS--SLRAQIDETNSWV 181 (319)
T ss_pred CCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCcc-ccCCH--HHHHHHhhhhcee
Confidence 3 33699999543 467899999999982 22 222 67776 4489999998886
No 250
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=93.65 E-value=0.11 Score=40.26 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=28.9
Q ss_pred ceEEEeccCChHHHHHHHHHHhcCCCeEEe
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
.++||+.+-|.-|+|++-.|+++|++|+++
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~ 31 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQ 31 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEE
Confidence 589999999999999999999999999998
No 251
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.53 E-value=0.18 Score=34.73 Aligned_cols=31 Identities=13% Similarity=0.226 Sum_probs=28.1
Q ss_pred ceEEEeccCChHHHHHHHHHHhcCCCeEEee
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLAKKIPLTIHV 51 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~ 51 (311)
+.+||++..||-|-...-.|+-.+++|+.+.
T Consensus 3 kp~lfgsn~Cpdca~a~eyl~rl~v~yd~Ve 33 (85)
T COG4545 3 KPKLFGSNLCPDCAPAVEYLERLNVDYDFVE 33 (85)
T ss_pred CceeeccccCcchHHHHHHHHHcCCCceeee
Confidence 3499999999999999999999999998883
No 252
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=93.26 E-value=0.3 Score=35.29 Aligned_cols=62 Identities=18% Similarity=0.062 Sum_probs=42.4
Q ss_pred CCCCceeeeccCCCchHHHHHHHHHhC-----CCCceEEEccCCCCchhHHhhCCCCcccEEEeCCeeec
Q psy13369 208 TQEGKIRVYSMRFCPYAQRVHLILLAK-----KIPHDPVFINLNEKPEWYVSSVPTGKVPALKSEGSILY 272 (311)
Q Consensus 208 ~~~~~~~Ly~~~~~~~~~~~r~~L~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~ 272 (311)
.+.-.+.+|..++|++|..+..++... ++.+..+.++ +. .+......-..+|+++.+|..+.
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~--~~-~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA--LF-QDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH--hC-HHHHHHcCCccCCEEEECCEEEE
Confidence 345578999999999999888776654 3444444443 32 33555566668999998776544
No 253
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.05 E-value=0.37 Score=35.28 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=52.8
Q ss_pred Cceeeec-----cCCCchHHHHHHHHHhCC-CCceEEEccCC-CCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHH
Q psy13369 211 GKIRVYS-----MRFCPYAQRVHLILLAKK-IPHDPVFINLN-EKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLD 282 (311)
Q Consensus 211 ~~~~Ly~-----~~~~~~~~~~r~~L~~~g-i~~~~~~v~~~-~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 282 (311)
.++.||- +|.|++|.++--+|...| ++|..+.|-.+ +.+..+++.+...+.|-|-.+|..+..|..|.+-.+
T Consensus 15 n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~Em~q 93 (105)
T COG0278 15 NPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREMYQ 93 (105)
T ss_pred CceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHHHHHH
Confidence 3455553 578999999999999999 56665555444 334445566778899999999999888877666543
No 254
>PRK10853 putative reductase; Provisional
Probab=93.02 E-value=0.15 Score=39.09 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=31.3
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCC
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN 246 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~ 246 (311)
+++|+.+.|.-|++++-+|...|++|+.+.+.-.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~ 35 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVD 35 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccC
Confidence 7899999999999999999999999999887644
No 255
>PRK10026 arsenate reductase; Provisional
Probab=92.96 E-value=0.15 Score=40.22 Aligned_cols=30 Identities=13% Similarity=0.197 Sum_probs=29.0
Q ss_pred ceEEEeccCChHHHHHHHHHHhcCCCeEEe
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
.|++|+.+.|.-|++++-.|++.|++|+++
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~ 32 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNSGTEPTII 32 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHCCCCcEEE
Confidence 589999999999999999999999999988
No 256
>PHA02125 thioredoxin-like protein
Probab=92.90 E-value=0.31 Score=33.83 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=38.6
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEE
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALK 265 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 265 (311)
+.+|+.++|+.|+.+.-.|.. +.++...|+... ..+..+...-..+|++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~--~~~~~~~vd~~~-~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLAN--VEYTYVDVDTDE-GVELTAKHHIRSLPTLV 51 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHH--HhheEEeeeCCC-CHHHHHHcCCceeCeEE
Confidence 678999999999999888864 566666666544 34566777778999998
No 257
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=92.85 E-value=0.51 Score=32.65 Aligned_cols=49 Identities=16% Similarity=0.058 Sum_probs=40.0
Q ss_pred CChHHHHHHHHHHhcCCC---eEEeecccccc-----cCCCCCCceecc-CCceeec-hhHhhHh
Q psy13369 29 FCPYAQRVHLILLAKKIP---LTIHVPVTQYR-----LIGSIFPTWLTT-ESETHWN-RTCSSYF 83 (311)
Q Consensus 29 ~sp~~~rv~~~L~~~gi~---~e~~~~~~~v~-----~~~~~~p~~l~~-~g~~l~E-~~I~~YL 83 (311)
.+|-|-.+.++|...+.+ ++++ ..+ +.+ +-|+|.+ ++..+.+ ..|.+||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv----~s~n~~~Sptg--~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVV----PSNNPWLSPTG--ELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEE----EcCCCCcCCCC--CCCEEEECCCcEEECHHHHHHhh
Confidence 689999999999999999 8877 443 233 4566777 8899999 9999898
No 258
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=92.39 E-value=0.56 Score=37.36 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=27.5
Q ss_pred ceEEEecc------CChHHHHHHHHHHhcCCCeEEe
Q psy13369 21 KLRVYSMR------FCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 21 ~~~Ly~~~------~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
.++||... ++|+|++++-+|+.+||+|+.+
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~ 36 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDER 36 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEE
Confidence 47899998 8999999999999999999776
No 259
>PRK10853 putative reductase; Provisional
Probab=92.15 E-value=0.22 Score=38.13 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=28.2
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEe
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
+++|+.+-|.-|++++-.|++.|++|+++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~ 30 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFH 30 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEe
Confidence 78999999999999999999999999988
No 260
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=91.99 E-value=0.25 Score=37.58 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=27.9
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEe
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
+++|+.+.|+-|+|++-.|.+.|++|+.+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~ 29 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVV 29 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEE
Confidence 58999999999999999999999999988
No 261
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=91.94 E-value=0.22 Score=37.82 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=30.7
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCC
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN 246 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~ 246 (311)
+++|+.+.|.-|++++-.|...|++|+.+.+.-.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~ 34 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKN 34 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCC
Confidence 5799999999999999999999999999887544
No 262
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=91.89 E-value=0.23 Score=37.60 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=30.6
Q ss_pred eeeeccCCCchHHHHHHHHHhCCCCceEEEccCC
Q psy13369 213 IRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN 246 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~ 246 (311)
+++|+.+.|.-|++++-.|...|++|+.+.+.-.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~ 34 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKT 34 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccC
Confidence 5799999999999999999999999999887533
No 263
>KOG1147|consensus
Probab=91.87 E-value=0.3 Score=46.37 Aligned_cols=85 Identities=16% Similarity=0.235 Sum_probs=57.7
Q ss_pred cCCceeec-hhHhhHhhhhhccCCCCCCCCCchhHHHhHhHHHHhhchhhhchhHHHHhhhcCCCCCcccHhHHHHhHHH
Q psy13369 69 TESETHWN-RTCSSYFEQKKRREREMKRSQDPPTQEGKLRVYSMRFCPYAQRLSPAFYKCMMGEGINPSTFGEIVTALEP 147 (311)
Q Consensus 69 ~~g~~l~E-~~I~~YL~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 147 (311)
-+|..+.. ..+..|....-...+ .+++.+ -+ +.+++.|.++... ....++...+..
T Consensus 43 ~d~~~l~~a~~~~~~~~~~~~~~~-~lf~~~-~d-~~~vd~w~~~s~~--------------------~~~~~~s~~~~~ 99 (712)
T KOG1147|consen 43 LDGRKLNGATEPVVYSAALAKADP-KLFGNN-ID-RSQVDHWVSFSST--------------------FSFDEISSSLSE 99 (712)
T ss_pred cccccccCCccchhhhhhhcccCH-hHcCCc-cc-HHHHHHHHHHhhh--------------------cchHHHHHHHHH
Confidence 34566655 555555543221112 477766 44 8888888876432 133567778888
Q ss_pred HHHHHhhcCCCcccCCCCchHHHHHHHHHHH
Q psy13369 148 LEAELKARGTPYLSGSKPGMVDYMIWPWLER 178 (311)
Q Consensus 148 le~~L~~~~~~~l~G~~~tlADi~l~~~~~~ 178 (311)
|+..|.-+ .|++|.++|+||++++..+..
T Consensus 100 ld~~l~~~--t~lvg~sls~Ad~aiw~~l~~ 128 (712)
T KOG1147|consen 100 LDKFLVLR--TFLVGNSLSIADFAIWGALHS 128 (712)
T ss_pred HHhhhhHH--HHhhccchhHHHHHHHHHHhc
Confidence 99888655 499999999999999998864
No 264
>PTZ00062 glutaredoxin; Provisional
Probab=91.83 E-value=0.25 Score=41.64 Aligned_cols=34 Identities=15% Similarity=0.324 Sum_probs=30.5
Q ss_pred CCCCceEEEec-----cCChHHHHHHHHHHhcCCCeEEe
Q psy13369 17 TQEGKLRVYSM-----RFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 17 ~~~~~~~Ly~~-----~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
.+.+++.||+. ++||||+++.-+|...|++|+.+
T Consensus 110 i~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~ 148 (204)
T PTZ00062 110 IRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETY 148 (204)
T ss_pred HhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEE
Confidence 55788999977 68999999999999999999876
No 265
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=91.62 E-value=0.3 Score=37.28 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=28.8
Q ss_pred ceEEEeccCChHHHHHHHHHHhcCCCeEEe
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
.+++|+.+-|.=|++++-.|+..||+|+.+
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~ 31 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFI 31 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEE
Confidence 589999999999999999999999999988
No 266
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=91.56 E-value=0.3 Score=37.01 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=27.9
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEe
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
|++|+.+.|+=|++++-.|.+.|++|+.+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~ 29 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIV 29 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEE
Confidence 68999999999999999999999999988
No 267
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=91.42 E-value=0.099 Score=40.46 Aligned_cols=69 Identities=13% Similarity=0.176 Sum_probs=49.3
Q ss_pred ccHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCCCCCCCceee
Q psy13369 136 STFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDPPTQEGKIRV 215 (311)
Q Consensus 136 ~~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~L 215 (311)
+..+++...|..++..+.. +-..+..+|+-||.+||.+..+...+ + ..+=|+|++|.+.++....+.|
T Consensus 60 ~~i~~l~~~L~~l~~ll~~---~~~~n~~ls~DDi~lFp~LR~Lt~vk---g------i~~P~~V~~Y~~~~s~~t~V~L 127 (128)
T cd03199 60 QYIAALNALLEELDPLILS---SEAVNGQLSTDDIILFPILRNLTLVK---G------LVFPPKVKAYLERMSALTKVPL 127 (128)
T ss_pred HHHHHHHHHHHHHHHHHcC---ccccCCcCCHHHHHHHHHHhhhhhhc---C------CCCCHHHHHHHHHHHHHhCCCC
Confidence 4567888888888888842 23356689999999999988776654 2 2334788888887666666555
Q ss_pred e
Q psy13369 216 Y 216 (311)
Q Consensus 216 y 216 (311)
|
T Consensus 128 ~ 128 (128)
T cd03199 128 F 128 (128)
T ss_pred C
Confidence 4
No 268
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=91.30 E-value=0.71 Score=32.11 Aligned_cols=57 Identities=26% Similarity=0.327 Sum_probs=37.5
Q ss_pred ceeeeccCCCchHHHHHH----HHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEEeCCeeecC
Q psy13369 212 KIRVYSMRFCPYAQRVHL----ILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALKSEGSILYE 273 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~----~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~e 273 (311)
+++++ .+.|++|.++.. ++...|+.++.+.+ ...++. ....-..+|+++.||...+.
T Consensus 2 ~I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~---~~~~~~-~~ygv~~vPalvIng~~~~~ 62 (76)
T PF13192_consen 2 KIKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDI---EDFEEI-EKYGVMSVPALVINGKVVFV 62 (76)
T ss_dssp EEEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEET---TTHHHH-HHTT-SSSSEEEETTEEEEE
T ss_pred EEEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEc---cCHHHH-HHcCCCCCCEEEECCEEEEE
Confidence 46674 556999996665 55567777766664 223334 66778899999988875443
No 269
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=90.70 E-value=0.27 Score=33.01 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=24.7
Q ss_pred ceEEEeccCChHHHHHHHHHHhc-----CCCeEEe
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLAK-----KIPLTIH 50 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~~-----gi~~e~~ 50 (311)
++++|+..+||+|.++.-+|++. ++++..+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~i 36 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMI 36 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEE
Confidence 47899999999999999999875 5666555
No 270
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.60 E-value=1.4 Score=38.58 Aligned_cols=98 Identities=19% Similarity=0.262 Sum_probs=65.0
Q ss_pred CCceeeeccCCCchHHHHHHHHHhCCCC----ceEEEccCCCCc----------------------hhHHhhCC----CC
Q psy13369 210 EGKIRVYSMRFCPYAQRVHLILLAKKIP----HDPVFINLNEKP----------------------EWYVSSVP----TG 259 (311)
Q Consensus 210 ~~~~~Ly~~~~~~~~~~~r~~L~~~gi~----~~~~~v~~~~~~----------------------~~~~~~~p----~~ 259 (311)
...+.||..-.||+++|..+.=..||++ +.++.-.+..+. +-|.+..| .-
T Consensus 49 ~GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRv 128 (324)
T COG0435 49 KGRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRV 128 (324)
T ss_pred CCeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCce
Confidence 4578999999999999999999999986 222222222111 11222223 44
Q ss_pred cccEEEeCC---eeecCHHHHHHHHHHhc----CCCCCCCCCCHHHHHHHHHHHHHh
Q psy13369 260 KVPALKSEG---SILYESLIISDYLDEKY----EGNRKLIASSPLQRALDRIFLETF 309 (311)
Q Consensus 260 ~vP~l~~~~---~~l~es~aI~~yL~~~~----~~~~~l~~~~~~~~a~~~~~~~~~ 309 (311)
+||||.+-. .+--||..|++=+...+ +....++|.+ -|.+++.|.+|+
T Consensus 129 TVPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~--Lr~eId~~n~~I 183 (324)
T COG0435 129 TVPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEA--LRTEIDELNKWI 183 (324)
T ss_pred eEEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHH--HHHHHHHHHhhh
Confidence 799999543 46679999999886433 2222788874 488898888875
No 271
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=90.46 E-value=0.065 Score=41.82 Aligned_cols=70 Identities=19% Similarity=0.263 Sum_probs=44.2
Q ss_pred cHhHHHHhHHHHHHHHhhcCCCcccCCCCchHHHHHHHHHHHhHhhhhhcCCCccCChhhhhhccCCCCCCCCCCceeee
Q psy13369 137 TFGEIVTALEPLEAELKARGTPYLSGSKPGMVDYMIWPWLERLPSLAELAGPEYALPADKFAQLVSSQDPPTQEGKIRVY 216 (311)
Q Consensus 137 ~~~~~~~~l~~le~~L~~~~~~~l~G~~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~Ly 216 (311)
..+++...|..||.++.. +-..++++|+-||.+||.+..+.... + ..+=|+|++|.+.++....+.||
T Consensus 60 ~i~~l~~~L~~Le~ll~~---~~~~n~~LS~dDi~lFp~LR~Ltivk---g------i~~P~~V~~Y~~~~s~~t~V~Ll 127 (132)
T PF04399_consen 60 LIAELNADLEELEPLLAS---PNAVNGELSIDDIILFPILRSLTIVK---G------IQWPPKVRAYMDRMSKATGVPLL 127 (132)
T ss_dssp HHHHHHHHHHHHHHH-SC---TTBTTSS--HHHHHHHHHHHHHCTCT---T------S---HHHHHHHHHHHHHHT---S
T ss_pred HHHHHHHHHHHHHHHhcc---ccccCCCCCHHHHHHHHHHhhhhhcc---C------CcCCHHHHHHHHHHHHHcCCCCc
Confidence 457788888888888852 34444599999999999988666554 2 23347888888876666666666
Q ss_pred cc
Q psy13369 217 SM 218 (311)
Q Consensus 217 ~~ 218 (311)
..
T Consensus 128 ~~ 129 (132)
T PF04399_consen 128 DD 129 (132)
T ss_dssp GG
T ss_pred hh
Confidence 53
No 272
>KOG1752|consensus
Probab=90.20 E-value=0.52 Score=35.15 Aligned_cols=34 Identities=21% Similarity=0.416 Sum_probs=31.3
Q ss_pred CCCCceEEEeccCChHHHHHHHHHHhcCCCeEEe
Q psy13369 17 TQEGKLRVYSMRFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 17 ~~~~~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
..++++.+|+-.+||||.++.-+|...|+.+.++
T Consensus 11 i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vv 44 (104)
T KOG1752|consen 11 ISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVV 44 (104)
T ss_pred hhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEE
Confidence 4578899999999999999999999999999888
No 273
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=90.18 E-value=1.2 Score=32.96 Aligned_cols=70 Identities=26% Similarity=0.294 Sum_probs=44.2
Q ss_pred ceeeeccCCCc------hHHHHHHHHHhCCCCceEEEccCCC-CchhHHhhC---------CCCcccEEEeCCeeecCHH
Q psy13369 212 KIRVYSMRFCP------YAQRVHLILLAKKIPHDPVFINLNE-KPEWYVSSV---------PTGKVPALKSEGSILYESL 275 (311)
Q Consensus 212 ~~~Ly~~~~~~------~~~~~r~~L~~~gi~~~~~~v~~~~-~~~~~~~~~---------p~~~vP~l~~~~~~l~es~ 275 (311)
.+.+|....++ .++++..+|..++|+|+.+.+.... ...++.+.. +..-.|.|..++..+.+--
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence 46788776665 4569999999999999999998873 344455444 2334578999998887766
Q ss_pred HHHHHH
Q psy13369 276 IISDYL 281 (311)
Q Consensus 276 aI~~yL 281 (311)
.+.+.-
T Consensus 82 ~f~ea~ 87 (99)
T PF04908_consen 82 DFEEAN 87 (99)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 274
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=83.88 E-value=13 Score=26.51 Aligned_cols=73 Identities=12% Similarity=0.210 Sum_probs=49.5
Q ss_pred CCceeeeccCCCchHHHHHHHHHh----CCCCceEEEccCCCCchhHHhhCCCCcccEEE--eCCeee------cCHHHH
Q psy13369 210 EGKIRVYSMRFCPYAQRVHLILLA----KKIPHDPVFINLNEKPEWYVSSVPTGKVPALK--SEGSIL------YESLII 277 (311)
Q Consensus 210 ~~~~~Ly~~~~~~~~~~~r~~L~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~l------~es~aI 277 (311)
..-+..|+.++|+.|+...-.+.. .+-++....|+.... .++.+......+|++. .+|... .+...|
T Consensus 18 ~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~-~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 96 (103)
T PF00085_consen 18 KPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN-KELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESL 96 (103)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS-HHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHH
T ss_pred CCEEEEEeCCCCCccccccceecccccccccccccchhhhhcc-chhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHH
Confidence 445677888999999988755533 222666777776643 4566777788999999 676542 355677
Q ss_pred HHHHHH
Q psy13369 278 SDYLDE 283 (311)
Q Consensus 278 ~~yL~~ 283 (311)
..+|++
T Consensus 97 ~~~i~~ 102 (103)
T PF00085_consen 97 IEFIEK 102 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 777664
No 275
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=81.79 E-value=1.6 Score=32.76 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=24.3
Q ss_pred eccCCCchHHHHHHHHHhCCCCceEEEccCC
Q psy13369 216 YSMRFCPYAQRVHLILLAKKIPHDPVFINLN 246 (311)
Q Consensus 216 y~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~ 246 (311)
|+.+.|.-|++++-.|...|++|+.+.+.-.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhC
Confidence 7889999999999999999999999888643
No 276
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=80.35 E-value=7 Score=29.92 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=34.5
Q ss_pred ceeeeccCCCchHHHHHHHHHh----CCCCceEEEccCCC---Cc-----hhHHhhCC----CCcccEEE--eCCee
Q psy13369 212 KIRVYSMRFCPYAQRVHLILLA----KKIPHDPVFINLNE---KP-----EWYVSSVP----TGKVPALK--SEGSI 270 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L~~----~gi~~~~~~v~~~~---~~-----~~~~~~~p----~~~vP~l~--~~~~~ 270 (311)
.+..|+.++||+|+.+.-.|.. .++++-.+.++... .. .++.+... ...+|+++ .+|..
T Consensus 26 ~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~ 102 (122)
T TIGR01295 26 ATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQ 102 (122)
T ss_pred EEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeE
Confidence 3667789999999986555543 34555445554321 11 13444332 34599999 67743
No 277
>KOG3028|consensus
Probab=80.20 E-value=15 Score=32.77 Aligned_cols=81 Identities=21% Similarity=0.241 Sum_probs=57.7
Q ss_pred CCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEE-eCCeeecCHHHHHHHHHHh---cCCCCCCCCCC
Q psy13369 220 FCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALK-SEGSILYESLIISDYLDEK---YEGNRKLIASS 295 (311)
Q Consensus 220 ~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~aI~~yL~~~---~~~~~~l~~~~ 295 (311)
.|+.|..+.+++...+.+.+++..+-.- ..|.|++|+|+ ++|..++.-..|..+|... |.-... ..
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN~~-------~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~d---l~ 85 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSNPW-------RSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDAD---LS 85 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecCCC-------CCCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCcc---HH
Confidence 4788999999999999666655544221 35789999999 6679999999999999872 221101 12
Q ss_pred HHHHHHHHHHHHHhc
Q psy13369 296 PLQRALDRIFLETFG 310 (311)
Q Consensus 296 ~~~~a~~~~~~~~~~ 310 (311)
..+.+....|+.++.
T Consensus 86 ~kq~a~~~a~~sll~ 100 (313)
T KOG3028|consen 86 AKQLADTLAFMSLLE 100 (313)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456777777776653
No 278
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=79.97 E-value=3.1 Score=28.85 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=23.7
Q ss_pred ceEEEeccCChHHHHH----HHHHHhcCCCeEEe
Q psy13369 21 KLRVYSMRFCPYAQRV----HLILLAKKIPLTIH 50 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv----~~~L~~~gi~~e~~ 50 (311)
.+.+|+ .+||+|..+ .-++.+.|++++++
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~ 34 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFE 34 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEE
Confidence 467887 899999999 55777788888777
No 279
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=79.61 E-value=2.4 Score=31.74 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=21.2
Q ss_pred EeccCChHHHHHHHHHHhcCCCeEEe
Q psy13369 25 YSMRFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 25 y~~~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
|+.+.|.-|++++-.|++.|++|+.+
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~ 26 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFI 26 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEE
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEee
Confidence 88999999999999999999999988
No 280
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=77.73 E-value=6.2 Score=29.67 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=35.9
Q ss_pred ceeee-ccCCCchHHHHHHHHHhCCCC---ceEEEccCCCCchhHHhhCCCCcccEEE
Q psy13369 212 KIRVY-SMRFCPYAQRVHLILLAKKIP---HDPVFINLNEKPEWYVSSVPTGKVPALK 265 (311)
Q Consensus 212 ~~~Ly-~~~~~~~~~~~r~~L~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 265 (311)
.+.++ +.++|++|+.++-.|....-. .+...++.+. .+++.....-..+|++.
T Consensus 24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~-~~~l~~~~~v~~vPt~~ 80 (113)
T cd02975 24 DLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE-DKEKAEKYGVERVPTTI 80 (113)
T ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc-CHHHHHHcCCCcCCEEE
Confidence 45555 678999999888877654432 3444555443 34566777788999999
No 281
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=77.18 E-value=11 Score=27.08 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=38.3
Q ss_pred CceeeeccCCCchHHHHHHHHHh----CCCCceEEEccCCCCchhHHhhCCCCcccEEE--eCCee
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILLA----KKIPHDPVFINLNEKPEWYVSSVPTGKVPALK--SEGSI 270 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~ 270 (311)
..+..|+.++|+.|+...-.+.. .+-.+....++..+. .++.+...-..+|++. .+|..
T Consensus 15 ~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~-~~l~~~~~v~~vPt~~i~~~g~~ 79 (97)
T cd02949 15 LILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDED-QEIAEAAGIMGTPTVQFFKDKEL 79 (97)
T ss_pred eEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCC-HHHHHHCCCeeccEEEEEECCeE
Confidence 34567888999999988877755 111244555555443 3455555667899988 66654
No 282
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=77.16 E-value=12 Score=25.65 Aligned_cols=55 Identities=11% Similarity=0.228 Sum_probs=36.8
Q ss_pred ceeeeccCCCchHHHHHHHHHh-----CCCCceEEEccCCCCchhHHhhCCCCcccEEE--eCCe
Q psy13369 212 KIRVYSMRFCPYAQRVHLILLA-----KKIPHDPVFINLNEKPEWYVSSVPTGKVPALK--SEGS 269 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~ 269 (311)
-+..|+.++|+.|+...-.+.. .++.+-. ++..+ ...+.+......+|+++ .+|.
T Consensus 13 ~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~--i~~~~-~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 13 VVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVK--VDVDE-NPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred EEEEEECCCChhHHHhhHHHHHHHHHCCCceEEE--EECCC-ChhHHHhcCcccccEEEEEECCE
Confidence 4667788899999988888777 5554443 34333 23455566667899988 5564
No 283
>KOG0911|consensus
Probab=76.56 E-value=6.6 Score=33.34 Aligned_cols=74 Identities=11% Similarity=0.101 Sum_probs=56.5
Q ss_pred CCCCceeeec-----cCCCchHHHHHHHHHhCCCCceEEEccCC-CCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHH
Q psy13369 208 TQEGKIRVYS-----MRFCPYAQRVHLILLAKKIPHDPVFINLN-EKPEWYVSSVPTGKVPALKSEGSILYESLIISDYL 281 (311)
Q Consensus 208 ~~~~~~~Ly~-----~~~~~~~~~~r~~L~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 281 (311)
-+..++.||- .|.|++++.+.-+|...|++|....|--+ ..+.-.++.+-..+.|-|-.+|..+..+..|..-+
T Consensus 136 v~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~ 215 (227)
T KOG0911|consen 136 VKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMH 215 (227)
T ss_pred cccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHh
Confidence 3445667774 57899999999999999999998888766 33444556677889999999998887766555443
No 284
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=76.01 E-value=1.8 Score=33.06 Aligned_cols=31 Identities=32% Similarity=0.452 Sum_probs=14.3
Q ss_pred CCCCcccEEE--eCCeeecCHHHHHHHHHHhcC
Q psy13369 256 VPTGKVPALK--SEGSILYESLIISDYLDEKYE 286 (311)
Q Consensus 256 ~p~~~vP~l~--~~~~~l~es~aI~~yL~~~~~ 286 (311)
|.-..-|-|+ .+|..|.|+.||++||..-+-
T Consensus 31 ~ed~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 31 NEDESGPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp -SS--S--EEE-S--S----HHHHHHHHTT--T
T ss_pred CCccccceeeecCCceEEecccHHHHHHHhhcC
Confidence 3334557785 678999999999999987654
No 285
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=75.90 E-value=14 Score=27.72 Aligned_cols=62 Identities=10% Similarity=0.065 Sum_probs=41.7
Q ss_pred CCceeeeccCCCchHHHHHHHHHhCC---CCceEEEccCCCCchhHHhhCCCCcccEEE--eCCeeec
Q psy13369 210 EGKIRVYSMRFCPYAQRVHLILLAKK---IPHDPVFINLNEKPEWYVSSVPTGKVPALK--SEGSILY 272 (311)
Q Consensus 210 ~~~~~Ly~~~~~~~~~~~r~~L~~~g---i~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~l~ 272 (311)
..-+..|+.++|+.|+.+.-.+.... -......|+.... .+..+...-..+|++. .+|..+.
T Consensus 23 ~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~-~~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 23 ERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKA-PFLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccC-HHHHHHCCCccCCEEEEEECCEEEE
Confidence 34556778899999998877765422 1245566665543 3466667778999999 7787654
No 286
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=73.37 E-value=2 Score=41.64 Aligned_cols=87 Identities=16% Similarity=0.054 Sum_probs=54.1
Q ss_pred CChhhhhhccCCCCCCCCCCceeeeccCCCchHHHHHHHHHhCCC---CceEEEccCCCCchhHHhhCCCCcccEEEeCC
Q psy13369 192 LPADKFAQLVSSQDPPTQEGKIRVYSMRFCPYAQRVHLILLAKKI---PHDPVFINLNEKPEWYVSSVPTGKVPALKSEG 268 (311)
Q Consensus 192 ~~~~~~p~l~~w~~~~~~~~~~~Ly~~~~~~~~~~~r~~L~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~ 268 (311)
++.+.-..+++.. ....+++|..+.||+|-.+..+++...+ .++...++-.. -+++.+......||.++.++
T Consensus 103 l~~~~~~~i~~~~----~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~-~~~~~~~~~v~~VP~~~i~~ 177 (517)
T PRK15317 103 LDQEVIEQIKALD----GDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGAL-FQDEVEARNIMAVPTVFLNG 177 (517)
T ss_pred CCHHHHHHHHhcC----CCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchh-CHhHHHhcCCcccCEEEECC
Confidence 4444444554443 3567899999999999987777655443 23444444333 34466666677999999777
Q ss_pred eeecC----HHHHHHHHHH
Q psy13369 269 SILYE----SLIISDYLDE 283 (311)
Q Consensus 269 ~~l~e----s~aI~~yL~~ 283 (311)
..+.+ -..++..+.+
T Consensus 178 ~~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 178 EEFGQGRMTLEEILAKLDT 196 (517)
T ss_pred cEEEecCCCHHHHHHHHhc
Confidence 65544 2355555554
No 287
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=73.08 E-value=1.8 Score=42.05 Aligned_cols=87 Identities=15% Similarity=0.086 Sum_probs=53.1
Q ss_pred CChhhhhhccCCCCCCCCCCceeeeccCCCchHHHHHHHHHhCCCC---ceEEEccCCCCchhHHhhCCCCcccEEEeCC
Q psy13369 192 LPADKFAQLVSSQDPPTQEGKIRVYSMRFCPYAQRVHLILLAKKIP---HDPVFINLNEKPEWYVSSVPTGKVPALKSEG 268 (311)
Q Consensus 192 ~~~~~~p~l~~w~~~~~~~~~~~Ly~~~~~~~~~~~r~~L~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~ 268 (311)
++.+.-..+++. .....+++|..+.||||-.+..++....+. ++...++-... +++.+......||.++.++
T Consensus 104 l~~~~~~~~~~~----~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~-~~~~~~~~v~~VP~~~i~~ 178 (515)
T TIGR03140 104 LDEGIIDRIRRL----NGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALF-QDEVEALGIQGVPAVFLNG 178 (515)
T ss_pred CCHHHHHHHHhc----CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhC-HHHHHhcCCcccCEEEECC
Confidence 444444445443 335678999999999999877776654443 33334443333 3455666667999999777
Q ss_pred eeecCH----HHHHHHHHH
Q psy13369 269 SILYES----LIISDYLDE 283 (311)
Q Consensus 269 ~~l~es----~aI~~yL~~ 283 (311)
..+.+. ..+++.+.+
T Consensus 179 ~~~~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 179 EEFHNGRMDLAELLEKLEE 197 (515)
T ss_pred cEEEecCCCHHHHHHHHhh
Confidence 655542 344455543
No 288
>PHA02278 thioredoxin-like protein
Probab=72.52 E-value=23 Score=26.14 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=38.4
Q ss_pred CCceeeeccCCCchHHHHHHHHHhC----CCCceEEEccCCCC---chhHHhhCCCCcccEEE--eCCeee
Q psy13369 210 EGKIRVYSMRFCPYAQRVHLILLAK----KIPHDPVFINLNEK---PEWYVSSVPTGKVPALK--SEGSIL 271 (311)
Q Consensus 210 ~~~~~Ly~~~~~~~~~~~r~~L~~~----gi~~~~~~v~~~~~---~~~~~~~~p~~~vP~l~--~~~~~l 271 (311)
..-+.-|+.++|+.|+.+.-.+... +.......++.+.. .+++.+...-..+|++. .+|..+
T Consensus 15 ~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 15 KDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred CcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence 3445567888999999777555332 22233444444432 24566666778899999 677653
No 289
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=71.75 E-value=5.9 Score=24.66 Aligned_cols=29 Identities=21% Similarity=0.520 Sum_probs=23.5
Q ss_pred eEEEeccCChHHHHHHHHHH-----hcCCCeEEe
Q psy13369 22 LRVYSMRFCPYAQRVHLILL-----AKKIPLTIH 50 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~-----~~gi~~e~~ 50 (311)
+.+|...+|++|++++..+. ..++.+..+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~ 34 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAV 34 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEE
Confidence 46788899999999999999 456666555
No 290
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=71.59 E-value=12 Score=27.31 Aligned_cols=54 Identities=7% Similarity=0.006 Sum_probs=34.6
Q ss_pred CceeeeccCCCchHHHHHHHH--------HhCCCCceEEEccCCCC---chhHHhhCCCCcccEEE
Q psy13369 211 GKIRVYSMRFCPYAQRVHLIL--------LAKKIPHDPVFINLNEK---PEWYVSSVPTGKVPALK 265 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L--------~~~gi~~~~~~v~~~~~---~~~~~~~~p~~~vP~l~ 265 (311)
.-+..|+.++|+.|+...-.+ ...+ .+....++.... ..++.+......+|++.
T Consensus 13 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 13 PVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred eEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 345678889999999876433 1222 455555665432 34566666677899988
No 291
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=71.22 E-value=6.3 Score=38.65 Aligned_cols=74 Identities=15% Similarity=0.155 Sum_probs=48.4
Q ss_pred CChhhhhhccCCCCCCCCCCceeeeccCCCchHHHHHH----HHHhC-CCCceEEEccCCCCchhHHhhCCCCcccEEEe
Q psy13369 192 LPADKFAQLVSSQDPPTQEGKIRVYSMRFCPYAQRVHL----ILLAK-KIPHDPVFINLNEKPEWYVSSVPTGKVPALKS 266 (311)
Q Consensus 192 ~~~~~~p~l~~w~~~~~~~~~~~Ly~~~~~~~~~~~r~----~L~~~-gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~ 266 (311)
++.+.-..|++. .....+++|..+.||+|-.+.. +..+. +|..+.+.+... ++..+...-..||+++.
T Consensus 463 l~~~~~~~i~~~----~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~---~~~~~~~~v~~vP~~~i 535 (555)
T TIGR03143 463 LGEELLEKIKKI----TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF---PDLKDEYGIMSVPAIVV 535 (555)
T ss_pred CCHHHHHHHHhc----CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc---HHHHHhCCceecCEEEE
Confidence 444444444443 3456789999999999987655 34444 677776666543 34555667788999998
Q ss_pred CCeeec
Q psy13369 267 EGSILY 272 (311)
Q Consensus 267 ~~~~l~ 272 (311)
+|..+.
T Consensus 536 ~~~~~~ 541 (555)
T TIGR03143 536 DDQQVY 541 (555)
T ss_pred CCEEEE
Confidence 876543
No 292
>PHA02125 thioredoxin-like protein
Probab=70.40 E-value=4.6 Score=27.79 Aligned_cols=27 Identities=15% Similarity=0.389 Sum_probs=21.9
Q ss_pred eEEEeccCChHHHHHHHHHHhcCCCeEEe
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
+.+|+.++|+.|+++.-.|+. ++++..
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~--~~~~~~ 28 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLAN--VEYTYV 28 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHH--HhheEE
Confidence 689999999999999888864 556555
No 293
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=70.37 E-value=8.7 Score=31.32 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=30.7
Q ss_pred HHHhHHHHHHHHhhc-CCCcccCCC-CchHHHHHHHHHHHhH
Q psy13369 141 IVTALEPLEAELKAR-GTPYLSGSK-PGMVDYMIWPWLERLP 180 (311)
Q Consensus 141 ~~~~l~~le~~L~~~-~~~~l~G~~-~tlADi~l~~~~~~~~ 180 (311)
-.+.+..|++.|+.. ...|+.|+. +|-+||.++..+.-+-
T Consensus 113 a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~l 154 (168)
T PF11801_consen 113 AMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALLL 154 (168)
T ss_pred HHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHh
Confidence 456678889998654 235888887 9999999999887443
No 294
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=69.14 E-value=24 Score=25.05 Aligned_cols=59 Identities=12% Similarity=0.070 Sum_probs=38.6
Q ss_pred CceeeeccCCCchHHHHHHHHHhC----CCCceEEEccCCCCchhHHhhCCCCcccEEE--eCCee
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILLAK----KIPHDPVFINLNEKPEWYVSSVPTGKVPALK--SEGSI 270 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~~~----gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~ 270 (311)
.-+..|+.++|+.|+++.-.|... +..+....++..... ++.+......+|++. .+|..
T Consensus 16 ~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~-~~~~~~~i~~~Pt~~~~~~g~~ 80 (97)
T cd02984 16 LLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP-EISEKFEITAVPTFVFFRNGTI 80 (97)
T ss_pred EEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCH-HHHHhcCCccccEEEEEECCEE
Confidence 345677889999999887766542 334566666655433 355555567799988 66654
No 295
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=67.73 E-value=8.2 Score=26.53 Aligned_cols=22 Identities=18% Similarity=0.569 Sum_probs=19.3
Q ss_pred ceEEEeccCChHHHHHHHHHHh
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLA 42 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~ 42 (311)
.++||+.++||+|.++.-.|+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~ 23 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEE 23 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHH
Confidence 4789999999999999888764
No 296
>KOG2824|consensus
Probab=67.52 E-value=16 Score=32.06 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=55.4
Q ss_pred CCCCCceeeeccCCCc------hHHHHHHHHHhCCCCceEEEccCC-CCchhHHhhCC----CCcccEEEeCCeeecCHH
Q psy13369 207 PTQEGKIRVYSMRFCP------YAQRVHLILLAKKIPHDPVFINLN-EKPEWYVSSVP----TGKVPALKSEGSILYESL 275 (311)
Q Consensus 207 ~~~~~~~~Ly~~~~~~------~~~~~r~~L~~~gi~~~~~~v~~~-~~~~~~~~~~p----~~~vP~l~~~~~~l~es~ 275 (311)
+.+...+.+|.....+ .|..||.+|+-.++.|+.+.|+++ ...+|+..+.. .-.+|.+..+|..|...-
T Consensus 127 Pgge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgae 206 (281)
T KOG2824|consen 127 PGGEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAE 206 (281)
T ss_pred CCCCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHH
Confidence 3445578888765443 688999999999999999999999 34555554432 457997779999888877
Q ss_pred HHHHH
Q psy13369 276 IISDY 280 (311)
Q Consensus 276 aI~~y 280 (311)
.|++-
T Consensus 207 eV~~L 211 (281)
T KOG2824|consen 207 EVVRL 211 (281)
T ss_pred Hhhhh
Confidence 66653
No 297
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=67.46 E-value=24 Score=26.21 Aligned_cols=60 Identities=10% Similarity=0.163 Sum_probs=37.4
Q ss_pred CCceeeeccCCCchHHHHHHHHH-----hCCCCceEEEccCCCCchhHHhhCCCCcccEEE--eCCee
Q psy13369 210 EGKIRVYSMRFCPYAQRVHLILL-----AKKIPHDPVFINLNEKPEWYVSSVPTGKVPALK--SEGSI 270 (311)
Q Consensus 210 ~~~~~Ly~~~~~~~~~~~r~~L~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~ 270 (311)
..-+..|+.++|+.|+...-.+. +.+..+....|+.... ....+...-..+|++. .+|..
T Consensus 25 ~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~-~~l~~~~~V~~~Pt~~i~~~g~~ 91 (111)
T cd02963 25 KPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE-RRLARKLGAHSVPAIVGIINGQV 91 (111)
T ss_pred CeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc-HHHHHHcCCccCCEEEEEECCEE
Confidence 45567788999999986654432 2233344555554432 3355556678899988 66643
No 298
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=66.59 E-value=36 Score=26.71 Aligned_cols=78 Identities=15% Similarity=0.097 Sum_probs=52.1
Q ss_pred CCCCceeeeccCCCchHHHHHHHHHhCCCCceEEEccCC-CCchhHHhhCCCCc----ccEEEeCCeeecCHHHHHHHHH
Q psy13369 208 TQEGKIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN-EKPEWYVSSVPTGK----VPALKSEGSILYESLIISDYLD 282 (311)
Q Consensus 208 ~~~~~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~----vP~l~~~~~~l~es~aI~~yL~ 282 (311)
++...+++++.-.|+.|-...-.|......-..+..++. +..-..++..+... .=.++.+|..+.+|.|+++-+.
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i~~ 84 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRILR 84 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEeccHHHHHHHH
Confidence 344556777888899999877777777777666666555 33334555444322 1223378899999999999887
Q ss_pred Hhc
Q psy13369 283 EKY 285 (311)
Q Consensus 283 ~~~ 285 (311)
..-
T Consensus 85 ~L~ 87 (137)
T COG3011 85 LLP 87 (137)
T ss_pred HCC
Confidence 643
No 299
>PHA03075 glutaredoxin-like protein; Provisional
Probab=66.30 E-value=9.1 Score=28.92 Aligned_cols=38 Identities=11% Similarity=0.233 Sum_probs=33.3
Q ss_pred CCceEEEeccCChHHHHHHHHHHhcCCCeEEeecccccccCC
Q psy13369 19 EGKLRVYSMRFCPYAQRVHLILLAKKIPLTIHVPVTQYRLIG 60 (311)
Q Consensus 19 ~~~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~~~~v~~~~ 60 (311)
.+.++|+|-|.|+-|.-+.-+|.+..=+|++. .||...
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~il----rVNIlS 39 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYDIL----RVNILS 39 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccccEE----EEEeee
Confidence 46799999999999999999998888889988 887543
No 300
>KOG3425|consensus
Probab=65.91 E-value=21 Score=27.26 Aligned_cols=67 Identities=21% Similarity=0.237 Sum_probs=43.6
Q ss_pred cCCCchHHHH----HHHHHhCCCCceEEEccCCCCchhHHhhCCC-------CcccEEE-e--CCeeecCHHHHHHHHHH
Q psy13369 218 MRFCPYAQRV----HLILLAKKIPHDPVFINLNEKPEWYVSSVPT-------GKVPALK-S--EGSILYESLIISDYLDE 283 (311)
Q Consensus 218 ~~~~~~~~~~----r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~-------~~vP~l~-~--~~~~l~es~aI~~yL~~ 283 (311)
..+||.|.++ +-+|.+.+-+...+.|...+++-|--.-||. .-||+|. - ....+.+...-..+|.+
T Consensus 42 qSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lve 121 (128)
T KOG3425|consen 42 QSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLVE 121 (128)
T ss_pred CcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHHHHH
Confidence 3589999965 4556667777777888777554433223332 4589998 3 34677777777777765
Q ss_pred h
Q psy13369 284 K 284 (311)
Q Consensus 284 ~ 284 (311)
-
T Consensus 122 ~ 122 (128)
T KOG3425|consen 122 M 122 (128)
T ss_pred H
Confidence 3
No 301
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=65.59 E-value=9.2 Score=29.95 Aligned_cols=73 Identities=14% Similarity=0.014 Sum_probs=48.0
Q ss_pred CCceeeeccCCCchHHHHHHHHHhCCCCceEEEccCCCCchhHHhh----CCCCcccEEEeCCeee---cCHHHHHHHHH
Q psy13369 210 EGKIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLNEKPEWYVSS----VPTGKVPALKSEGSIL---YESLIISDYLD 282 (311)
Q Consensus 210 ~~~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~~~~~~~~~----~p~~~vP~l~~~~~~l---~es~aI~~yL~ 282 (311)
..++.+|..|.|++|..-.-.|+.+|.+++.+..+-.. ..++. -.+..==+.+.+|..+ .-..+|.+.|+
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~---alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~ 101 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFL---ALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLA 101 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHH---HHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHh
Confidence 45789999999999999999999999888776655321 11111 0112222455555432 33779999998
Q ss_pred Hhc
Q psy13369 283 EKY 285 (311)
Q Consensus 283 ~~~ 285 (311)
+..
T Consensus 102 ~~p 104 (149)
T COG3019 102 EKP 104 (149)
T ss_pred CCC
Confidence 865
No 302
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=65.53 E-value=27 Score=29.49 Aligned_cols=55 Identities=20% Similarity=0.211 Sum_probs=37.3
Q ss_pred CCceeeeccCCCchHHHHHHHHHhCCC---CceEEEccCCCCchhHHhhCCCCcccEEE
Q psy13369 210 EGKIRVYSMRFCPYAQRVHLILLAKKI---PHDPVFINLNEKPEWYVSSVPTGKVPALK 265 (311)
Q Consensus 210 ~~~~~Ly~~~~~~~~~~~r~~L~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 265 (311)
.-.+.+|+.++|++|..+..++....- ......++... .++..+...-..+|+++
T Consensus 134 pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~-~~~~~~~~~V~~vPtl~ 191 (215)
T TIGR02187 134 PVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANE-NPDLAEKYGVMSVPKIV 191 (215)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCC-CHHHHHHhCCccCCEEE
Confidence 346788999999999988877765322 23334455443 34456666777899999
No 303
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=62.18 E-value=26 Score=26.48 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=32.8
Q ss_pred CceeeeccCCCchHHHHHHHHH-------hCCCCceEEEccCCCC------------chhHHhhCCCCcccEEE
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILL-------AKKIPHDPVFINLNEK------------PEWYVSSVPTGKVPALK 265 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~-------~~gi~~~~~~v~~~~~------------~~~~~~~~p~~~vP~l~ 265 (311)
..+..|+.++|++|++..-.+. ..+-.+....++..+. ..++........+|+++
T Consensus 16 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~ 89 (125)
T cd02951 16 PLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVI 89 (125)
T ss_pred cEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEE
Confidence 4556778899999998764331 1111344555555432 23455555567799988
No 304
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.04 E-value=17 Score=26.85 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=27.8
Q ss_pred CCCCceEEEe-----ccCChHHHHHHHHHHhcC-CCeEEe
Q psy13369 17 TQEGKLRVYS-----MRFCPYAQRVHLILLAKK-IPLTIH 50 (311)
Q Consensus 17 ~~~~~~~Ly~-----~~~sp~~~rv~~~L~~~g-i~~e~~ 50 (311)
..++++.||. +|-|.||.++--+|...| ++|..+
T Consensus 12 i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~v 51 (105)
T COG0278 12 IKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYV 51 (105)
T ss_pred hhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEE
Confidence 3456788885 688999999999999999 677665
No 305
>PTZ00051 thioredoxin; Provisional
Probab=60.86 E-value=37 Score=24.11 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=36.9
Q ss_pred CceeeeccCCCchHHHHHHHHHhC---CCCceEEEccCCCCchhHHhhCCCCcccEEE--eCCee
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILLAK---KIPHDPVFINLNEKPEWYVSSVPTGKVPALK--SEGSI 270 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~~~---gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~ 270 (311)
.-+..|+.++|+.|+...-.+... ...+....++..+ ...+.+...-..+|+++ .+|..
T Consensus 20 ~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 20 LVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE-LSEVAEKENITSMPTFKVFKNGSV 83 (98)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc-hHHHHHHCCCceeeEEEEEeCCeE
Confidence 345677889999999876655542 1224444555443 33456666678899988 55643
No 306
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=60.48 E-value=26 Score=24.81 Aligned_cols=58 Identities=16% Similarity=0.152 Sum_probs=36.2
Q ss_pred CceeeeccCCCchHHHHHHHHHh----CCCCceEEEccCCCCchhHHhhCCCCcccEEE--eCCe
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILLA----KKIPHDPVFINLNEKPEWYVSSVPTGKVPALK--SEGS 269 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~ 269 (311)
.-+..++.++|+.|+...-.+.. .+-.+....++.... .++.+...-..+|++. .+|.
T Consensus 16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 16 PVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN-PDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred cEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC-HHHHHHcCCCcCCEEEEEeCCc
Confidence 34556778899999977655543 222355556665543 3455556667899988 5554
No 307
>PRK09381 trxA thioredoxin; Provisional
Probab=60.38 E-value=63 Score=23.49 Aligned_cols=59 Identities=14% Similarity=0.200 Sum_probs=37.2
Q ss_pred CceeeeccCCCchHHHHHHHHHh----CCCCceEEEccCCCCchhHHhhCCCCcccEEE--eCCee
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILLA----KKIPHDPVFINLNEKPEWYVSSVPTGKVPALK--SEGSI 270 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~ 270 (311)
.-+..|+.++|+.|+...-.++. .+-.+....++..... .+.+...-..+|+++ .+|..
T Consensus 23 ~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~G~~ 87 (109)
T PRK09381 23 AILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP-GTAPKYGIRGIPTLLLFKNGEV 87 (109)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCCh-hHHHhCCCCcCCEEEEEeCCeE
Confidence 34567788899999977654432 2223556666665433 344445667899988 66654
No 308
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=59.97 E-value=20 Score=25.47 Aligned_cols=59 Identities=8% Similarity=0.007 Sum_probs=38.0
Q ss_pred CceeeeccCCCchHHHHHHHHHhCC----CCceEEEccCCCCchhHHhhCCCCcccEEE--eCCee
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILLAKK----IPHDPVFINLNEKPEWYVSSVPTGKVPALK--SEGSI 270 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~~~g----i~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~ 270 (311)
.-+..|+.++|+.|+...-.+.... -.+....++..+ ..++.+...-..+|+++ .+|..
T Consensus 14 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 14 PVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA-QPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC-CHHHHHHcCCCCCCEEEEEeCCEE
Confidence 3456678889999998766665422 134455666554 34465666667899999 66643
No 309
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=58.88 E-value=20 Score=26.02 Aligned_cols=29 Identities=31% Similarity=0.227 Sum_probs=23.4
Q ss_pred eEEEeccCCh------HHHHHHHHHHhcCCCeEEe
Q psy13369 22 LRVYSMRFCP------YAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 22 ~~Ly~~~~sp------~~~rv~~~L~~~gi~~e~~ 50 (311)
++||..-.+. -|++|+.+|.-+||+|+.+
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~ei 36 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEV 36 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEE
Confidence 5677655554 6888999999999999877
No 310
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=57.66 E-value=30 Score=29.19 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=39.0
Q ss_pred CCCceeeecc---CCCchHHHHHHHHHhCC-----CCceEEEccCCCCchhHHhhCCCCcccEEE--eCCe
Q psy13369 209 QEGKIRVYSM---RFCPYAQRVHLILLAKK-----IPHDPVFINLNEKPEWYVSSVPTGKVPALK--SEGS 269 (311)
Q Consensus 209 ~~~~~~Ly~~---~~~~~~~~~r~~L~~~g-----i~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~ 269 (311)
+.-.+.+|+. ++|+.|+.+.-.+.+.. +.+..+.++.++ ..+..+...-..+|++. .+|.
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~-~~~l~~~~~V~~~Pt~~~f~~g~ 88 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE-DKEEAEKYGVERVPTTIILEEGK 88 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc-cHHHHHHcCCCccCEEEEEeCCe
Confidence 3445778877 89999998877775542 233344444333 44566667778899999 4543
No 311
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=57.38 E-value=5.3 Score=31.01 Aligned_cols=55 Identities=20% Similarity=0.213 Sum_probs=29.5
Q ss_pred CCceeeeccCCCchHHHH----HHHHHhC-CCCceEEEccCC-CCchhHHhhCCCCcccEEE
Q psy13369 210 EGKIRVYSMRFCPYAQRV----HLILLAK-KIPHDPVFINLN-EKPEWYVSSVPTGKVPALK 265 (311)
Q Consensus 210 ~~~~~Ly~~~~~~~~~~~----r~~L~~~-gi~~~~~~v~~~-~~~~~~~~~~p~~~vP~l~ 265 (311)
...+.++.-++||.|.+. .-+++.. +++++....+-. ...+.|+. +....||+++
T Consensus 42 ~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~~~IP~~I 102 (129)
T PF14595_consen 42 PYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGGRSIPTFI 102 (129)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS--SSEEE
T ss_pred CcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCCeecCEEE
Confidence 457888999999999843 3444444 666666655422 22334555 7778999999
No 312
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=56.65 E-value=63 Score=23.39 Aligned_cols=59 Identities=7% Similarity=-0.059 Sum_probs=36.3
Q ss_pred CCceeeeccCCCchHHHHHHHHHh----CC-CCceEEEccCCCCchhHHhhCCCCcccEEE--eCCee
Q psy13369 210 EGKIRVYSMRFCPYAQRVHLILLA----KK-IPHDPVFINLNEKPEWYVSSVPTGKVPALK--SEGSI 270 (311)
Q Consensus 210 ~~~~~Ly~~~~~~~~~~~r~~L~~----~g-i~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~ 270 (311)
..-+..|+.++|+.|+...-.+.. .+ -......++.+ ..+..+...-..+|++. .+|..
T Consensus 18 ~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 18 GLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--TIDTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred CeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--CHHHHHHcCCCcCcEEEEEECCEE
Confidence 344567788999999977655533 22 12344444444 33456666678899888 66653
No 313
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=56.52 E-value=13 Score=26.72 Aligned_cols=31 Identities=16% Similarity=0.089 Sum_probs=24.9
Q ss_pred CceEEEeccCChHHHHHHHHHHhc-----CCCeEEe
Q psy13369 20 GKLRVYSMRFCPYAQRVHLILLAK-----KIPLTIH 50 (311)
Q Consensus 20 ~~~~Ly~~~~sp~~~rv~~~L~~~-----gi~~e~~ 50 (311)
=.+.+|..++||+|..+.-++... ++.++.+
T Consensus 14 v~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~v 49 (89)
T cd03026 14 INFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMI 49 (89)
T ss_pred EEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEE
Confidence 359999999999999998887765 5666655
No 314
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=56.21 E-value=50 Score=24.00 Aligned_cols=61 Identities=8% Similarity=0.042 Sum_probs=37.3
Q ss_pred CCceeeeccCCCchHHHHHHHHHhCC---CCceEEEccCCCCc--hhHHhhCCCCcccEEE--eCCee
Q psy13369 210 EGKIRVYSMRFCPYAQRVHLILLAKK---IPHDPVFINLNEKP--EWYVSSVPTGKVPALK--SEGSI 270 (311)
Q Consensus 210 ~~~~~Ly~~~~~~~~~~~r~~L~~~g---i~~~~~~v~~~~~~--~~~~~~~p~~~vP~l~--~~~~~ 270 (311)
..-+..|+.++|+.|+...-.+.... -.+....|+.+... .++.+...-..+|+++ .+|..
T Consensus 16 k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~ 83 (103)
T cd02985 16 RLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEK 83 (103)
T ss_pred CEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeE
Confidence 34556778889999997665554321 12345555544322 3566666667799988 56654
No 315
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=56.01 E-value=49 Score=24.54 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=37.5
Q ss_pred CceeeeccCCCchHHHHHHHHHhCCC---CceEEEccCCCCchhHHhhCCCCcccEEE--eCCeee
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILLAKKI---PHDPVFINLNEKPEWYVSSVPTGKVPALK--SEGSIL 271 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~l 271 (311)
.-+..|+.++|+.|+.+.-.++...- ......|+..+. ++.+...-..+|+++ .+|..+
T Consensus 26 ~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~--~l~~~~~i~~~Pt~~~f~~G~~v 89 (113)
T cd02957 26 RVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA--FLVNYLDIKVLPTLLVYKNGELI 89 (113)
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh--HHHHhcCCCcCCEEEEEECCEEE
Confidence 34557888999999977766654222 233445554433 455556667899999 677654
No 316
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=55.91 E-value=17 Score=25.36 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=20.1
Q ss_pred ceEEEeccCChHHHHHHHHHHhcC
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLAKK 44 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~~g 44 (311)
+++||+.+.|+-|..+.-+|....
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~ 24 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVA 24 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCC
T ss_pred CEEEEcCCCCChHHHHHHHHHHHH
Confidence 589999999999999999999754
No 317
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=55.56 E-value=23 Score=26.15 Aligned_cols=30 Identities=40% Similarity=0.485 Sum_probs=21.4
Q ss_pred ceEEEeccCCh------HHHHHHHHHHhcCCCeEEe
Q psy13369 21 KLRVYSMRFCP------YAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 21 ~~~Ly~~~~sp------~~~rv~~~L~~~gi~~e~~ 50 (311)
.|++|.+..|. ..+++..+|+.++|+|+.+
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~v 37 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEV 37 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEE
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 47788766655 5789999999999999876
No 318
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=55.42 E-value=28 Score=26.35 Aligned_cols=58 Identities=7% Similarity=0.038 Sum_probs=38.4
Q ss_pred ceeeeccCCCchHHHHHHHHHhCCCC----ceEEEccCCCCchhHHhhCCCCcccEEE--eCCee
Q psy13369 212 KIRVYSMRFCPYAQRVHLILLAKKIP----HDPVFINLNEKPEWYVSSVPTGKVPALK--SEGSI 270 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L~~~gi~----~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~ 270 (311)
.+.-|+.++|+.|+.+.-.|...--. .+...|+.++. +++.+...-..+|++. .+|..
T Consensus 17 vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~-~~la~~~~V~~iPTf~~fk~G~~ 80 (114)
T cd02954 17 VVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV-PDFNKMYELYDPPTVMFFFRNKH 80 (114)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCC-HHHHHHcCCCCCCEEEEEECCEE
Confidence 34457889999999877666443322 34456665543 3466666777899999 67754
No 319
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.12 E-value=80 Score=28.26 Aligned_cols=77 Identities=10% Similarity=0.140 Sum_probs=54.5
Q ss_pred CCceeeeccCCCchHHHHHHHHH----hCCCCceEEEccCCCCchhHHhhCCCCcccEEE--eCCeeecC------HHHH
Q psy13369 210 EGKIRVYSMRFCPYAQRVHLILL----AKKIPHDPVFINLNEKPEWYVSSVPTGKVPALK--SEGSILYE------SLII 277 (311)
Q Consensus 210 ~~~~~Ly~~~~~~~~~~~r~~L~----~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~l~e------s~aI 277 (311)
.+-+..|+.++|+-|+...-.|+ +.+=.|....|+.+.. +.......-..+|+++ .+|..+.+ -..|
T Consensus 44 ~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~-p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesql 122 (304)
T COG3118 44 VPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAE-PMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQL 122 (304)
T ss_pred CCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcc-hhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHH
Confidence 35667889999999997665554 3445677777776643 3356677778999998 77765443 5688
Q ss_pred HHHHHHhcCC
Q psy13369 278 SDYLDEKYEG 287 (311)
Q Consensus 278 ~~yL~~~~~~ 287 (311)
-++|++..+.
T Consensus 123 r~~ld~~~~~ 132 (304)
T COG3118 123 RQFLDKVLPA 132 (304)
T ss_pred HHHHHHhcCh
Confidence 9999887664
No 320
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=53.07 E-value=57 Score=23.92 Aligned_cols=56 Identities=11% Similarity=0.209 Sum_probs=35.2
Q ss_pred CCceeeeccCCCchHHHHHHHHHh-----CCCCceEEEccCCCCchhHH-hhCCCCcccEEE
Q psy13369 210 EGKIRVYSMRFCPYAQRVHLILLA-----KKIPHDPVFINLNEKPEWYV-SSVPTGKVPALK 265 (311)
Q Consensus 210 ~~~~~Ly~~~~~~~~~~~r~~L~~-----~gi~~~~~~v~~~~~~~~~~-~~~p~~~vP~l~ 265 (311)
..-+..|+.++|+.|+...-.+.. ++..+....|+.+.....+. +......+|++.
T Consensus 22 k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 22 QSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTIL 83 (109)
T ss_pred CCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEE
Confidence 345678889999999977655433 33345555666554222333 245677899987
No 321
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=52.40 E-value=16 Score=27.90 Aligned_cols=21 Identities=5% Similarity=0.099 Sum_probs=10.8
Q ss_pred ccCCceeec-hhHhhHhhhhhc
Q psy13369 68 TTESETHWN-RTCSSYFEQKKR 88 (311)
Q Consensus 68 ~~~g~~l~E-~~I~~YL~~~~~ 88 (311)
..+|+.|.| +||++||..-|-
T Consensus 42 ~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 42 KKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp -S--S----HHHHHHHHTT--T
T ss_pred cCCceEEecccHHHHHHHhhcC
Confidence 568899999 999999999884
No 322
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=52.12 E-value=88 Score=26.80 Aligned_cols=75 Identities=7% Similarity=0.075 Sum_probs=47.1
Q ss_pred CceeeeccCCCchHHHHHHHHHhC----CCCceEEEccCCCCchhHHhhCCCCcccEEE--eCCeee------cCHHHHH
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILLAK----KIPHDPVFINLNEKPEWYVSSVPTGKVPALK--SEGSIL------YESLIIS 278 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~~~----gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~l------~es~aI~ 278 (311)
.-+..|+.++|+.|+...-.+... +-.+....++..+ ..++.+...-..+|++. .+|..+ .....|.
T Consensus 54 ~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~-~~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L~ 132 (224)
T PTZ00443 54 PWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATR-ALNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKLA 132 (224)
T ss_pred CEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcc-cHHHHHHcCCCcCCEEEEEECCEEEEeeCCCCCHHHHH
Confidence 456778889999999776554332 1123444455443 23455556667899988 666543 2456788
Q ss_pred HHHHHhcC
Q psy13369 279 DYLDEKYE 286 (311)
Q Consensus 279 ~yL~~~~~ 286 (311)
.++.+.+.
T Consensus 133 ~fi~~~~~ 140 (224)
T PTZ00443 133 AFALGDFK 140 (224)
T ss_pred HHHHHHHH
Confidence 88887764
No 323
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=51.66 E-value=60 Score=24.43 Aligned_cols=61 Identities=11% Similarity=0.114 Sum_probs=33.2
Q ss_pred CceeeeccCCCchHHHHHHHHHh------CCCCceEEEccCCCCchhHHhhCCCC-cccEEE--e-CCeeec
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILLA------KKIPHDPVFINLNEKPEWYVSSVPTG-KVPALK--S-EGSILY 272 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~~------~gi~~~~~~v~~~~~~~~~~~~~p~~-~vP~l~--~-~~~~l~ 272 (311)
.-+..|+.++|+.|++..-.+.. .+..|-.+.++.... +.....+..| .+|+++ + +|..+.
T Consensus 21 pVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~-~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 21 PLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE-PKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred cEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC-chhhhcccCCCccceEEEECCCCCCch
Confidence 34556778899999988665555 222344444443221 1112334443 499999 3 565543
No 324
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=51.25 E-value=60 Score=23.26 Aligned_cols=58 Identities=10% Similarity=-0.011 Sum_probs=35.8
Q ss_pred CceeeeccCCCchHHHHHHHHHhCCC----CceEEEccCCCCchhHHhhCCCCcccEEE--eCCe
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILLAKKI----PHDPVFINLNEKPEWYVSSVPTGKVPALK--SEGS 269 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~~~gi----~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~ 269 (311)
.-+..|+.++|+.|+...-.+....- .+....|+..+. ..+.+...-..+|++. .+|.
T Consensus 20 ~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 20 IWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD-RMLCRSQGVNSYPSLYVFPSGM 83 (101)
T ss_pred eEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc-HHHHHHcCCCccCEEEEEcCCC
Confidence 34567888999999977665533222 244555565543 3355555567899987 4553
No 325
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=50.99 E-value=52 Score=25.11 Aligned_cols=63 Identities=13% Similarity=0.193 Sum_probs=35.1
Q ss_pred Cceeeecc-------CCCchHHHHHHHH----HhCCCCceEEEccCCCC------chhHHhhCCCC-cccEEE--eCCee
Q psy13369 211 GKIRVYSM-------RFCPYAQRVHLIL----LAKKIPHDPVFINLNEK------PEWYVSSVPTG-KVPALK--SEGSI 270 (311)
Q Consensus 211 ~~~~Ly~~-------~~~~~~~~~r~~L----~~~gi~~~~~~v~~~~~------~~~~~~~~p~~-~vP~l~--~~~~~ 270 (311)
..+..|+. ++|+.|+.+.-.+ ....-.+....|+.++. ..++.....-. .+|++. .++..
T Consensus 23 ~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~ 102 (119)
T cd02952 23 PIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQR 102 (119)
T ss_pred eEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCce
Confidence 33455666 7999999665443 33332355566665432 23454433334 799999 44444
Q ss_pred ecC
Q psy13369 271 LYE 273 (311)
Q Consensus 271 l~e 273 (311)
|.|
T Consensus 103 l~~ 105 (119)
T cd02952 103 LVE 105 (119)
T ss_pred ecc
Confidence 444
No 326
>PRK10996 thioredoxin 2; Provisional
Probab=49.50 E-value=85 Score=24.36 Aligned_cols=59 Identities=10% Similarity=0.138 Sum_probs=38.2
Q ss_pred CceeeeccCCCchHHHHHHHHHh----CCCCceEEEccCCCCchhHHhhCCCCcccEEE--eCCee
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILLA----KKIPHDPVFINLNEKPEWYVSSVPTGKVPALK--SEGSI 270 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~ 270 (311)
..+..|+.++|+.|+...-.+.. .+-.+....++..+. .++.+...-..+|+++ .+|..
T Consensus 54 ~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~-~~l~~~~~V~~~Ptlii~~~G~~ 118 (139)
T PRK10996 54 PVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAE-RELSARFRIRSIPTIMIFKNGQV 118 (139)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCC-HHHHHhcCCCccCEEEEEECCEE
Confidence 34567788999999976544433 232355556665543 4466666677899998 66654
No 327
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=48.96 E-value=24 Score=27.74 Aligned_cols=72 Identities=13% Similarity=0.085 Sum_probs=48.5
Q ss_pred CCCCC-CCCCceEEEeccCChHHHHHHHHHHhcCCCeEEeecccccccCCC-----CCCce------eccCCceeec---
Q psy13369 12 SQDPP-TQEGKLRVYSMRFCPYAQRVHLILLAKKIPLTIHVPVTQYRLIGS-----IFPTW------LTTESETHWN--- 76 (311)
Q Consensus 12 ~~~p~-~~~~~~~Ly~~~~sp~~~rv~~~L~~~gi~~e~~~~~~~v~~~~~-----~~p~~------l~~~g~~l~E--- 76 (311)
+..|. .+.-++..|.++.|-||..-.=.|+.+|.++..+ ..+.... -.|.- .+.+|..+-.
T Consensus 17 ~~~~~~a~~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~----~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVP 92 (149)
T COG3019 17 STGPAQAQATEMVVYKSPNCGCCDEWAQHMKANGFEVKVV----ETDDFLALKRRLGIPYEMQSCHTAVINGYYVEGHVP 92 (149)
T ss_pred cccchhcceeeEEEEeCCCCccHHHHHHHHHhCCcEEEEe----ecCcHHHHHHhcCCChhhccccEEEEcCEEEeccCC
Confidence 44453 4467799999999999999988999999887665 2221100 02222 3567766544
Q ss_pred -hhHhhHhhhhh
Q psy13369 77 -RTCSSYFEQKK 87 (311)
Q Consensus 77 -~~I~~YL~~~~ 87 (311)
.+|.+.|++..
T Consensus 93 a~aI~~ll~~~p 104 (149)
T COG3019 93 AEAIARLLAEKP 104 (149)
T ss_pred HHHHHHHHhCCC
Confidence 67998888876
No 328
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=47.41 E-value=69 Score=23.68 Aligned_cols=69 Identities=13% Similarity=0.170 Sum_probs=43.1
Q ss_pred eeccCCCchHHHHHHHHHhCCCCceEEEccCCC-CchhHH---hh---CCCCcccEEEeCCe-eecCHHHHHHHHHHh
Q psy13369 215 VYSMRFCPYAQRVHLILLAKKIPHDPVFINLNE-KPEWYV---SS---VPTGKVPALKSEGS-ILYESLIISDYLDEK 284 (311)
Q Consensus 215 Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~~-~~~~~~---~~---~p~~~vP~l~~~~~-~l~es~aI~~yL~~~ 284 (311)
|++...||.|.+..-.+...+..-....++..+ ...+.+ .+ +....+-+ ..+|. ....+.|+.+-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 467778999999888888887644555555532 222222 12 12334444 55665 999999998886653
No 329
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=46.73 E-value=30 Score=28.71 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=21.7
Q ss_pred CCCceEEEeccCChHHHHHHHHHHh
Q psy13369 18 QEGKLRVYSMRFCPYAQRVHLILLA 42 (311)
Q Consensus 18 ~~~~~~Ly~~~~sp~~~rv~~~L~~ 42 (311)
.+..+.+|..+.||||++..-.+..
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh
Confidence 4567999999999999999988874
No 330
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=44.93 E-value=23 Score=28.84 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=27.5
Q ss_pred ceeeeccCCCchHHH----HHHHHHhC-CCCceEEEccCCC
Q psy13369 212 KIRVYSMRFCPYAQR----VHLILLAK-KIPHDPVFINLNE 247 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~----~r~~L~~~-gi~~~~~~v~~~~ 247 (311)
++++|+...||+|.. ++-++... ++.++.+++.+..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~ 41 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRP 41 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSST
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccccc
Confidence 478899999999984 44455555 8888888888663
No 331
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=44.56 E-value=92 Score=24.32 Aligned_cols=60 Identities=12% Similarity=0.106 Sum_probs=35.7
Q ss_pred CceeeeccCCCchHHHHHHHHHhC----CCCceEEEccCCCC-chhHHhhCCCCcccEEE-e--CCee
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILLAK----KIPHDPVFINLNEK-PEWYVSSVPTGKVPALK-S--EGSI 270 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~~~----gi~~~~~~v~~~~~-~~~~~~~~p~~~vP~l~-~--~~~~ 270 (311)
.-+..|+.++|+.|+...-.+... +-.+..+.|+.+.. ...+.+......+|+++ . +|..
T Consensus 22 ~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~ 89 (142)
T cd02950 22 PTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE 89 (142)
T ss_pred EEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence 345567888999999776555432 22244555554422 23455556667899888 3 4643
No 332
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=43.97 E-value=87 Score=22.67 Aligned_cols=56 Identities=11% Similarity=0.111 Sum_probs=34.2
Q ss_pred CCceeeeccCCCchHHHHHHHHHhCCCC---ceEEEccCCCCchhHHhhCCCCcccEEE
Q psy13369 210 EGKIRVYSMRFCPYAQRVHLILLAKKIP---HDPVFINLNEKPEWYVSSVPTGKVPALK 265 (311)
Q Consensus 210 ~~~~~Ly~~~~~~~~~~~r~~L~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 265 (311)
..-+..|+.++|+.|+...-.++...-. .....|+..+....+.+...-..+|++.
T Consensus 19 ~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~ 77 (100)
T cd02999 19 DYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTIL 77 (100)
T ss_pred CEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEE
Confidence 4456778889999999877555432211 3334444432334455555667899888
No 333
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=43.56 E-value=26 Score=27.57 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=19.7
Q ss_pred CCCCceEEEeccCChHHHHHHHHHH
Q psy13369 17 TQEGKLRVYSMRFCPYAQRVHLILL 41 (311)
Q Consensus 17 ~~~~~~~Ly~~~~sp~~~rv~~~L~ 41 (311)
..+..++.|..+.||+|++..-.+.
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~ 35 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELE 35 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHh
Confidence 4466799999999999999876664
No 334
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=43.24 E-value=33 Score=23.83 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=18.8
Q ss_pred eEEEeccCChHHHHHHHHHHhc
Q psy13369 22 LRVYSMRFCPYAQRVHLILLAK 43 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L~~~ 43 (311)
+.+|..+.||+|++..-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 4689999999999998888764
No 335
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=43.16 E-value=24 Score=25.83 Aligned_cols=23 Identities=22% Similarity=0.609 Sum_probs=16.5
Q ss_pred CCceEEEeccCChHHHHHHHHHH
Q psy13369 19 EGKLRVYSMRFCPYAQRVHLILL 41 (311)
Q Consensus 19 ~~~~~Ly~~~~sp~~~rv~~~L~ 41 (311)
...+.+|+.++||||++..-.+.
T Consensus 6 k~~v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 6 KPIVVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp SEEEEEEE-TT-HHHHHHHHHHH
T ss_pred CEEEEEEECCCCHHHHHHHHHHH
Confidence 34588889999999999876665
No 336
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=42.25 E-value=46 Score=26.57 Aligned_cols=60 Identities=8% Similarity=0.069 Sum_probs=36.5
Q ss_pred ceeeeccCCCchHHHHHHHHHhC-----CCCceEEEccCCCCchhHHhhCCC------CcccEEE--eCCeeec
Q psy13369 212 KIRVYSMRFCPYAQRVHLILLAK-----KIPHDPVFINLNEKPEWYVSSVPT------GKVPALK--SEGSILY 272 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L~~~-----gi~~~~~~v~~~~~~~~~~~~~p~------~~vP~l~--~~~~~l~ 272 (311)
-+..|+.++|+.|+...-.++.. +-.++...|+.++.. +..+...- +++|+++ .+|..+.
T Consensus 50 vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~-~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 50 WLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP-NVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH-HHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 46678888999999776554332 233556666665433 23333222 3489998 7776544
No 337
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=42.20 E-value=1.1e+02 Score=21.58 Aligned_cols=59 Identities=8% Similarity=0.129 Sum_probs=33.6
Q ss_pred CceeeeccCCCchHHHHHHHHH----hCC--CCceEEEccCCC-CchhHHhhCCCCcccEEE--eCCe
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILL----AKK--IPHDPVFINLNE-KPEWYVSSVPTGKVPALK--SEGS 269 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~----~~g--i~~~~~~v~~~~-~~~~~~~~~p~~~vP~l~--~~~~ 269 (311)
.-+.+|+.++|+.|+...-.+. ... -.+....++... ....+.+...-..+|+++ .+|.
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGK 86 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCC
Confidence 4456788889999997743322 211 223344444442 134455555666799988 4444
No 338
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=42.04 E-value=84 Score=22.40 Aligned_cols=53 Identities=8% Similarity=0.129 Sum_probs=34.2
Q ss_pred ceeeeccCCCchHHHHHHHHHhC-----CCCceEEEccCCCCchhHHhhCCCCcccEEE
Q psy13369 212 KIRVYSMRFCPYAQRVHLILLAK-----KIPHDPVFINLNEKPEWYVSSVPTGKVPALK 265 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 265 (311)
.+..|+.++|+.|+...-.+... +..+....++..+. ..+.+...-..+|++.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~-~~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE-PGLSGRFFVTALPTIY 76 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC-HhHHHHcCCcccCEEE
Confidence 46788889999999766554432 33455555555432 3355555667899988
No 339
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=41.76 E-value=1e+02 Score=21.24 Aligned_cols=54 Identities=7% Similarity=-0.012 Sum_probs=35.9
Q ss_pred CceeeeccCCCchHHHHHHHHHhC------CCCceEEEccCCCCchhHHhhCCCCcccEEE
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILLAK------KIPHDPVFINLNEKPEWYVSSVPTGKVPALK 265 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~~~------gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 265 (311)
..+.+|+.++|+.|+...-.+... +-.+....++... ...+.+...-..+|++.
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-NNDLCSEYGVRGYPTIK 76 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-hHHHHHhCCCCCCCEEE
Confidence 456788889999999877766542 2335555555443 34455556667899988
No 340
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=41.41 E-value=32 Score=29.56 Aligned_cols=26 Identities=15% Similarity=0.391 Sum_probs=21.3
Q ss_pred CCCCceEEEeccCChHHHHHHHHHHh
Q psy13369 17 TQEGKLRVYSMRFCPYAQRVHLILLA 42 (311)
Q Consensus 17 ~~~~~~~Ly~~~~sp~~~rv~~~L~~ 42 (311)
..+..+.+|..+.||||+|..=-+..
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~ 131 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKD 131 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHH
Confidence 34566999999999999999876655
No 341
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=41.08 E-value=26 Score=26.27 Aligned_cols=26 Identities=12% Similarity=0.373 Sum_probs=21.6
Q ss_pred ccEEE-eCCeeecCHHHHHHHHHHhcC
Q psy13369 261 VPALK-SEGSILYESLIISDYLDEKYE 286 (311)
Q Consensus 261 vP~l~-~~~~~l~es~aI~~yL~~~~~ 286 (311)
+|.+. .+|.+.+.|..|+++...+|.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 46666 899999999999999987763
No 342
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=40.94 E-value=32 Score=30.01 Aligned_cols=24 Identities=17% Similarity=0.301 Sum_probs=19.9
Q ss_pred CCCceEEEeccCChHHHHHHHHHH
Q psy13369 18 QEGKLRVYSMRFCPYAQRVHLILL 41 (311)
Q Consensus 18 ~~~~~~Ly~~~~sp~~~rv~~~L~ 41 (311)
.+..+.+|..+.||||+|.+--+.
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHH
Confidence 345688999999999999987765
No 343
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=40.75 E-value=24 Score=26.95 Aligned_cols=58 Identities=17% Similarity=0.350 Sum_probs=28.6
Q ss_pred cCCCchHHHHHHH----HHhCCCCceEEEccCCCCch------hHHh--hCCCCcccEEE--eCCeeecCHH
Q psy13369 218 MRFCPYAQRVHLI----LLAKKIPHDPVFINLNEKPE------WYVS--SVPTGKVPALK--SEGSILYESL 275 (311)
Q Consensus 218 ~~~~~~~~~~r~~----L~~~gi~~~~~~v~~~~~~~------~~~~--~~p~~~vP~l~--~~~~~l~es~ 275 (311)
..+||.|+++.-. +....-....+.+...++.. .|+. .-....||+|. .++..|.|.-
T Consensus 35 ~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~e 106 (119)
T PF06110_consen 35 QSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERLVEEE 106 (119)
T ss_dssp -BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-EEEHHH
T ss_pred CcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCCccchhh
Confidence 4589999977644 44433345555555543322 2333 12346799999 4556666544
No 344
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=39.86 E-value=1.2e+02 Score=21.78 Aligned_cols=58 Identities=10% Similarity=0.090 Sum_probs=35.3
Q ss_pred ceeeeccCCCchHHHHHHHHHhC----CCCceEEEccCCC-CchhHHhhCCCCcccEEE--eCCe
Q psy13369 212 KIRVYSMRFCPYAQRVHLILLAK----KIPHDPVFINLNE-KPEWYVSSVPTGKVPALK--SEGS 269 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L~~~----gi~~~~~~v~~~~-~~~~~~~~~p~~~vP~l~--~~~~ 269 (311)
.+..|+.++|+.|+...-.+... +-.+....++... ...++.+...-..+|+++ .+|.
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPK 85 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCC
Confidence 56788889999999765444332 2223444455443 133455566677899998 4443
No 345
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=39.62 E-value=51 Score=27.29 Aligned_cols=37 Identities=14% Similarity=0.277 Sum_probs=26.8
Q ss_pred CCCceeeeccCCCchHHHHHHHHHh--CCCCceEEEccC
Q psy13369 209 QEGKIRVYSMRFCPYAQRVHLILLA--KKIPHDPVFINL 245 (311)
Q Consensus 209 ~~~~~~Ly~~~~~~~~~~~r~~L~~--~gi~~~~~~v~~ 245 (311)
....+.+|..+.||+|++..-.+.. .++.+....+..
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~ 115 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPI 115 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCc
Confidence 3457789999999999999988874 445455554443
No 346
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=38.95 E-value=37 Score=25.90 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=19.2
Q ss_pred ceEEEeccCChHHHHHHHHHHhc
Q psy13369 21 KLRVYSMRFCPYAQRVHLILLAK 43 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~~~ 43 (311)
.+.-|+..+||+|+.+.=.|...
T Consensus 26 ~iv~f~~~~Cp~C~~~~P~l~~~ 48 (122)
T TIGR01295 26 ATFFIGRKTCPYCRKFSGTLSGV 48 (122)
T ss_pred EEEEEECCCChhHHHHhHHHHHH
Confidence 47889999999999988777654
No 347
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=38.08 E-value=1.4e+02 Score=24.31 Aligned_cols=59 Identities=15% Similarity=0.032 Sum_probs=36.4
Q ss_pred ceeeeccCCCchHHHHHHHHHh---CCCCceEEEccCCCCchhHHhhCCCCcccEEE--eCCeeec
Q psy13369 212 KIRVYSMRFCPYAQRVHLILLA---KKIPHDPVFINLNEKPEWYVSSVPTGKVPALK--SEGSILY 272 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L~~---~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~l~ 272 (311)
-+..|+.++|+.|+.+--.|.. .--.+....|+.... +.....+-..+|+|. -+|..+.
T Consensus 86 VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~--~l~~~f~v~~vPTlllyk~G~~v~ 149 (175)
T cd02987 86 VVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT--GASDEFDTDALPALLVYKGGELIG 149 (175)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch--hhHHhCCCCCCCEEEEEECCEEEE
Confidence 4456778899999866544322 222344555555432 455566778899999 6776543
No 348
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=38.03 E-value=1.1e+02 Score=23.38 Aligned_cols=62 Identities=11% Similarity=0.198 Sum_probs=37.5
Q ss_pred eeeeccCCCchHHHHHH-H------HHhCCCCceEEEccCCCCchh---HHh----hCCCCcccEEE---eCCeeecCH
Q psy13369 213 IRVYSMRFCPYAQRVHL-I------LLAKKIPHDPVFINLNEKPEW---YVS----SVPTGKVPALK---SEGSILYES 274 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r~-~------L~~~gi~~~~~~v~~~~~~~~---~~~----~~p~~~vP~l~---~~~~~l~es 274 (311)
+..++..+|++|++..- . ....+-.|..+.+|..+..+. +.+ .+..+-+|+++ .+|..+..+
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 34467889999998743 2 222233577777776643321 111 23456789988 567777665
No 349
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=37.93 E-value=45 Score=24.04 Aligned_cols=57 Identities=9% Similarity=0.029 Sum_probs=35.5
Q ss_pred CceeeeccCCCchHHHHHHHHHhCCC----CceEEEccCCCCchhHHhhCCCCcccEEE--eCC
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILLAKKI----PHDPVFINLNEKPEWYVSSVPTGKVPALK--SEG 268 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~~~gi----~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~ 268 (311)
.-+..|+.++|+.|++..-.+....- .+....++.... .++.+...-..+|++. .+|
T Consensus 21 ~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 21 PWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY-ESLCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch-HHHHHHcCCCcccEEEEEcCC
Confidence 45667888999999976555443222 244455555543 3455556677899988 444
No 350
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=37.58 E-value=38 Score=28.35 Aligned_cols=35 Identities=23% Similarity=0.163 Sum_probs=26.1
Q ss_pred ceeeeccCCCchHHHH----HHHHHhCCCCceEEEccCC
Q psy13369 212 KIRVYSMRFCPYAQRV----HLILLAKKIPHDPVFINLN 246 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~----r~~L~~~gi~~~~~~v~~~ 246 (311)
++.+|+...||||.-. .-++...+++++.+++.+.
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L~ 40 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFLG 40 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence 5789999999999854 4445567788787787654
No 351
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=37.52 E-value=42 Score=23.79 Aligned_cols=55 Identities=9% Similarity=0.050 Sum_probs=33.0
Q ss_pred CCceeeeccCCCchHHHHHHHHHh-----CCC-CceEEEccCCCCchhHHhhCCCCcccEEE
Q psy13369 210 EGKIRVYSMRFCPYAQRVHLILLA-----KKI-PHDPVFINLNEKPEWYVSSVPTGKVPALK 265 (311)
Q Consensus 210 ~~~~~Ly~~~~~~~~~~~r~~L~~-----~gi-~~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 265 (311)
...+..|+.++|+.|+...-.+.. .+- .+....++... ...+.+......+|++.
T Consensus 14 ~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~i~~~P~~~ 74 (102)
T TIGR01126 14 KDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA-EKDLASRFGVSGFPTIK 74 (102)
T ss_pred CcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc-hHHHHHhCCCCcCCEEE
Confidence 445778899999999975444433 221 13344444332 33455555667899886
No 352
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=36.40 E-value=58 Score=27.96 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=21.2
Q ss_pred CCCceeeeccCCCchHHHHHHHHHhC
Q psy13369 209 QEGKIRVYSMRFCPYAQRVHLILLAK 234 (311)
Q Consensus 209 ~~~~~~Ly~~~~~~~~~~~r~~L~~~ 234 (311)
....+.+|..+.||||++.+--+...
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHH
Confidence 34568899999999999998877663
No 353
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=36.24 E-value=64 Score=24.21 Aligned_cols=58 Identities=10% Similarity=-0.128 Sum_probs=35.6
Q ss_pred CceeeeccCCCchHHHHHHHHHhCCCC----ceEEEccCCCCchhHH-hhCCCCcccEEE--eCCe
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILLAKKIP----HDPVFINLNEKPEWYV-SSVPTGKVPALK--SEGS 269 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~~~gi~----~~~~~v~~~~~~~~~~-~~~p~~~vP~l~--~~~~ 269 (311)
..+..|+.++|+.|+...-.+++..-. .....|+-++.. ... +...-..+|+|. .+|.
T Consensus 31 ~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~-~l~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 31 VSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQ-GKCRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCh-HHHHHhcCCcccCEEEEEECCc
Confidence 356678899999999887766654432 334555544322 233 344456789888 5543
No 354
>KOG2501|consensus
Probab=34.55 E-value=70 Score=25.72 Aligned_cols=57 Identities=21% Similarity=0.395 Sum_probs=32.2
Q ss_pred cCCCchHH-------HHHHHHHhCCCCceEEEccCCCCch------------------------hHHhhCCCCcccEEE-
Q psy13369 218 MRFCPYAQ-------RVHLILLAKKIPHDPVFINLNEKPE------------------------WYVSSVPTGKVPALK- 265 (311)
Q Consensus 218 ~~~~~~~~-------~~r~~L~~~gi~~~~~~v~~~~~~~------------------------~~~~~~p~~~vP~l~- 265 (311)
..+||-|+ +.--.+...+-+++++.|+.++..+ ++........+|+|+
T Consensus 42 A~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~v~~iP~l~i 121 (157)
T KOG2501|consen 42 AHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYEVKGIPALVI 121 (157)
T ss_pred EEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcccCcCceeEE
Confidence 34566555 3333444555567777776663222 223334456789888
Q ss_pred --eCCeeecCH
Q psy13369 266 --SEGSILYES 274 (311)
Q Consensus 266 --~~~~~l~es 274 (311)
.+|+++++-
T Consensus 122 ~~~dG~~v~~d 132 (157)
T KOG2501|consen 122 LKPDGTVVTED 132 (157)
T ss_pred ecCCCCEehHh
Confidence 677776654
No 355
>KOG0907|consensus
Probab=34.45 E-value=68 Score=23.86 Aligned_cols=56 Identities=9% Similarity=0.062 Sum_probs=38.2
Q ss_pred eeeccCCCchHHHHHHHHHhCCCCc---eEEEccCCCCchhHHhhCCCCcccEEE--eCCee
Q psy13369 214 RVYSMRFCPYAQRVHLILLAKKIPH---DPVFINLNEKPEWYVSSVPTGKVPALK--SEGSI 270 (311)
Q Consensus 214 ~Ly~~~~~~~~~~~r~~L~~~gi~~---~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~ 270 (311)
.-|+..+|+-|+.+.=.+......| ....||.++ ..++.+...-..+|+++ -+|..
T Consensus 26 vdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde-~~~~~~~~~V~~~PTf~f~k~g~~ 86 (106)
T KOG0907|consen 26 VDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE-LEEVAKEFNVKAMPTFVFYKGGEE 86 (106)
T ss_pred EEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc-CHhHHHhcCceEeeEEEEEECCEE
Confidence 3467789999998776666555444 344555555 56677777778899999 66654
No 356
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=34.25 E-value=43 Score=25.85 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=19.8
Q ss_pred CCCceEEEeccCChHHHHHHHHHHh
Q psy13369 18 QEGKLRVYSMRFCPYAQRVHLILLA 42 (311)
Q Consensus 18 ~~~~~~Ly~~~~sp~~~rv~~~L~~ 42 (311)
.+-++..|..+.||+|++..-.+..
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~ 29 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEK 29 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHH
Confidence 4567899999999999998755443
No 357
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=34.01 E-value=60 Score=23.65 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=36.2
Q ss_pred ceeeeccCCCchHHHHHHHHHhCC------C----CceEEEccCCCCchhHHhhCCCCcccEEE--eCCe
Q psy13369 212 KIRVYSMRFCPYAQRVHLILLAKK------I----PHDPVFINLNEKPEWYVSSVPTGKVPALK--SEGS 269 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L~~~g------i----~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~ 269 (311)
-+..|+.++|+.|+...-.+.... . .+....++-... .++.+...-..+|++. .+|.
T Consensus 21 vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-~~l~~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 21 VLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-SDIADRYRINKYPTLKLFRNGM 89 (108)
T ss_pred EEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-HHHHHhCCCCcCCEEEEEeCCc
Confidence 456778899999998776664211 1 234445554433 3466666778899988 5554
No 358
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=33.77 E-value=53 Score=28.60 Aligned_cols=34 Identities=12% Similarity=0.298 Sum_probs=23.3
Q ss_pred CCceeeeccCCCchHHHHHHHHHh---CC-CCceEEEc
Q psy13369 210 EGKIRVYSMRFCPYAQRVHLILLA---KK-IPHDPVFI 243 (311)
Q Consensus 210 ~~~~~Ly~~~~~~~~~~~r~~L~~---~g-i~~~~~~v 243 (311)
...+.+|..+.||||++..--+.. .| +.++...+
T Consensus 118 k~~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 118 PRIVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 345778899999999998776542 33 55544443
No 359
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=32.87 E-value=88 Score=23.57 Aligned_cols=65 Identities=11% Similarity=0.071 Sum_probs=43.0
Q ss_pred CCCCceeeeccCC--CchHHHHHHHHHhCCCCc----eEEEccCCCCchhHHhhCCCCcccEEE--eCCeeecC
Q psy13369 208 TQEGKIRVYSMRF--CPYAQRVHLILLAKKIPH----DPVFINLNEKPEWYVSSVPTGKVPALK--SEGSILYE 273 (311)
Q Consensus 208 ~~~~~~~Ly~~~~--~~~~~~~r~~L~~~gi~~----~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~l~e 273 (311)
+....+..|+..+ ||-|+.+.-.|.+..-.| ....|+..+.. +......-..+|+|+ .+|..+..
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~-~la~~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ-ALAARFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH-HHHHHcCCCcCCEEEEEECCEEEEE
Confidence 3455667777774 999998887765544333 33455555433 566777778899999 77876543
No 360
>PF13728 TraF: F plasmid transfer operon protein
Probab=32.78 E-value=1.3e+02 Score=25.55 Aligned_cols=56 Identities=16% Similarity=0.119 Sum_probs=35.8
Q ss_pred CCceeeeccCCCchHH----HHHHHHHhCCCCceEEEccCC--------CCchhHHhhCCCCcccEEE
Q psy13369 210 EGKIRVYSMRFCPYAQ----RVHLILLAKKIPHDPVFINLN--------EKPEWYVSSVPTGKVPALK 265 (311)
Q Consensus 210 ~~~~~Ly~~~~~~~~~----~~r~~L~~~gi~~~~~~v~~~--------~~~~~~~~~~p~~~vP~l~ 265 (311)
.-.+.+|+...|++|+ .++.+....|+++..+.+|-. .......+......+|++.
T Consensus 121 ~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~ 188 (215)
T PF13728_consen 121 KYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALF 188 (215)
T ss_pred CeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEE
Confidence 3346788888999998 456666677777776666521 0122333334446899988
No 361
>KOG0190|consensus
Probab=32.55 E-value=1.6e+02 Score=28.44 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=51.8
Q ss_pred ceeeeccCCCchHHH-------HHHHHHhCCCCceEEEccCCCCchhHHhhCCCCcccEEE--eCCee------ecCHHH
Q psy13369 212 KIRVYSMRFCPYAQR-------VHLILLAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALK--SEGSI------LYESLI 276 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~-------~r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~------l~es~a 276 (311)
.+.-||.|||+.|.+ +.-.|.+.|-+.....||-... .++-....-.-.|+|. .+|.. --+.-.
T Consensus 45 vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~adg 123 (493)
T KOG0190|consen 45 VLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-SDLASKYEVRGYPTLKIFRNGRSAQDYNGPREADG 123 (493)
T ss_pred EEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-hhhHhhhcCCCCCeEEEEecCCcceeccCcccHHH
Confidence 457889999999984 4455666666788888876533 2344444455567777 55543 456789
Q ss_pred HHHHHHHhcCCC
Q psy13369 277 ISDYLDEKYEGN 288 (311)
Q Consensus 277 I~~yL~~~~~~~ 288 (311)
|+.||-++.+++
T Consensus 124 Iv~wl~kq~gPa 135 (493)
T KOG0190|consen 124 IVKWLKKQSGPA 135 (493)
T ss_pred HHHHHHhccCCC
Confidence 999999887655
No 362
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=32.35 E-value=56 Score=23.25 Aligned_cols=55 Identities=9% Similarity=0.023 Sum_probs=34.7
Q ss_pred CceeeeccCCCchHHHHHHHHHh----CC--CCceEEEccCCCCchhHHhhCCCCcccEEE
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILLA----KK--IPHDPVFINLNEKPEWYVSSVPTGKVPALK 265 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~~----~g--i~~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 265 (311)
..+..|+.++|+.|+...-.+.. .. -.+....++.....+.+.+...-..+|+++
T Consensus 20 ~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 20 DVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLK 80 (105)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEE
Confidence 45677889999999866544433 22 235555566554234466666667899988
No 363
>PTZ00102 disulphide isomerase; Provisional
Probab=32.29 E-value=2.7e+02 Score=26.32 Aligned_cols=77 Identities=12% Similarity=0.055 Sum_probs=48.2
Q ss_pred CceeeeccCCCchHHHHHHHH-------HhCCCCceEEEccCCCCchhHHhhCCCCcccEEE--eCCee-----ecCHHH
Q psy13369 211 GKIRVYSMRFCPYAQRVHLIL-------LAKKIPHDPVFINLNEKPEWYVSSVPTGKVPALK--SEGSI-----LYESLI 276 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L-------~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~-----l~es~a 276 (311)
.-+..|+.++|+.|++..-.+ ...+-++....|+.... .++.+...-..+|++. .+|.. -.....
T Consensus 51 ~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~-~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~ 129 (477)
T PTZ00102 51 IVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE-MELAQEFGVRGYPTIKFFNKGNPVNYSGGRTADG 129 (477)
T ss_pred cEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC-HHHHHhcCCCcccEEEEEECCceEEecCCCCHHH
Confidence 456788899999999765322 22334566666665533 3344455556799887 55532 235678
Q ss_pred HHHHHHHhcCCC
Q psy13369 277 ISDYLDEKYEGN 288 (311)
Q Consensus 277 I~~yL~~~~~~~ 288 (311)
|..|+.+..+.+
T Consensus 130 l~~~l~~~~~~~ 141 (477)
T PTZ00102 130 IVSWIKKLTGPA 141 (477)
T ss_pred HHHHHHHhhCCC
Confidence 999998876543
No 364
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=31.63 E-value=60 Score=23.05 Aligned_cols=57 Identities=11% Similarity=0.130 Sum_probs=34.2
Q ss_pred ceeeeccCCCchHHHHHHHH-----HhCC--CCceEEEccCCCCchhHHhhCCCCcccEEE--eCCe
Q psy13369 212 KIRVYSMRFCPYAQRVHLIL-----LAKK--IPHDPVFINLNEKPEWYVSSVPTGKVPALK--SEGS 269 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L-----~~~g--i~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~ 269 (311)
.+..|+.++|+.|+...-.+ ...+ -.+....++..... ...+...-..+|++. .+|.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~g~ 84 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR-ELCSEFQVRGYPTLLLFKDGE 84 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh-hhHhhcCCCcCCEEEEEeCCC
Confidence 56778889999999764433 2222 23555566654332 344444557799887 5554
No 365
>PRK09266 hypothetical protein; Provisional
Probab=29.70 E-value=85 Score=27.40 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=41.7
Q ss_pred HHHhCCCCceEEEccCC---CCchhHHhhCCCCcccEEEeCCeeecCHHHHHHHHHHhcCC
Q psy13369 230 ILLAKKIPHDPVFINLN---EKPEWYVSSVPTGKVPALKSEGSILYESLIISDYLDEKYEG 287 (311)
Q Consensus 230 ~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~ 287 (311)
++...|++++...++.. +..+.|+--+-.|-+||...|+..+..+..|.+.|.+.|..
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~~ 260 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAYEA 260 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHHHh
Confidence 45667899999888866 33334443345699999998888877667888888777643
No 366
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=29.41 E-value=3.2e+02 Score=25.52 Aligned_cols=76 Identities=13% Similarity=0.107 Sum_probs=47.6
Q ss_pred CceeeeccCCCchHHHHHHHHH-------hCCCCceEEEccCCCCchhHHhhCCCCcccEEE--eCCee-------ecCH
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILL-------AKKIPHDPVFINLNEKPEWYVSSVPTGKVPALK--SEGSI-------LYES 274 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~-------~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~-------l~es 274 (311)
.-+.+|+.++|+.|++..-.+. ..+-.+....|+..+. .++.+...-..+|++. .+|.. -.+.
T Consensus 20 ~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~ 98 (462)
T TIGR01130 20 FVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-KDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDA 98 (462)
T ss_pred CEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-HHHHHhCCCccccEEEEEeCCccceeEecCCCCH
Confidence 3467788899999997653332 2233356666665543 3355555556789887 44443 2356
Q ss_pred HHHHHHHHHhcCC
Q psy13369 275 LIISDYLDEKYEG 287 (311)
Q Consensus 275 ~aI~~yL~~~~~~ 287 (311)
..|..++.+..+.
T Consensus 99 ~~l~~~i~~~~~~ 111 (462)
T TIGR01130 99 DGIVKYMKKQSGP 111 (462)
T ss_pred HHHHHHHHHhcCC
Confidence 7889999877653
No 367
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=27.20 E-value=72 Score=25.85 Aligned_cols=33 Identities=18% Similarity=0.030 Sum_probs=22.8
Q ss_pred eeeeccCCCchHHHH----HHHHHhCCCCceEEEccC
Q psy13369 213 IRVYSMRFCPYAQRV----HLILLAKKIPHDPVFINL 245 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~----r~~L~~~gi~~~~~~v~~ 245 (311)
+++|+...||+|+.. +-+....++.++.+++.+
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~l 37 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPILL 37 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeeeH
Confidence 467888999999954 444445677777766643
No 368
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=26.65 E-value=2e+02 Score=20.58 Aligned_cols=55 Identities=9% Similarity=0.087 Sum_probs=33.2
Q ss_pred CCceeeeccCCCchHHHHHHHHHh-------CCCCceEEEccCCCCchhHHhhCCCCcccEEE
Q psy13369 210 EGKIRVYSMRFCPYAQRVHLILLA-------KKIPHDPVFINLNEKPEWYVSSVPTGKVPALK 265 (311)
Q Consensus 210 ~~~~~Ly~~~~~~~~~~~r~~L~~-------~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 265 (311)
..-+..|+.++|+.|++..-.+.. .+..+....++.... +++.+...-..+|++.
T Consensus 16 ~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~I~~~Pt~~ 77 (104)
T cd03000 16 DIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-SSIASEFGVRGYPTIK 77 (104)
T ss_pred CeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-HhHHhhcCCccccEEE
Confidence 345667788899999966544422 133344445554432 3344555567899998
No 369
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=26.43 E-value=73 Score=26.10 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=14.1
Q ss_pred eEEEeccCChHHHHHHHHH
Q psy13369 22 LRVYSMRFCPYAQRVHLIL 40 (311)
Q Consensus 22 ~~Ly~~~~sp~~~rv~~~L 40 (311)
|.+|..+.||||.-..--|
T Consensus 1 I~~~~D~~cP~cyl~~~~l 19 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRL 19 (201)
T ss_pred CeEEecCcCccHHHHHHHH
Confidence 4689999999998444433
No 370
>KOG0911|consensus
Probab=26.03 E-value=1.4e+02 Score=25.54 Aligned_cols=33 Identities=15% Similarity=0.317 Sum_probs=28.1
Q ss_pred CCCceEEEe-----ccCChHHHHHHHHHHhcCCCeEEe
Q psy13369 18 QEGKLRVYS-----MRFCPYAQRVHLILLAKKIPLTIH 50 (311)
Q Consensus 18 ~~~~~~Ly~-----~~~sp~~~rv~~~L~~~gi~~e~~ 50 (311)
++++++||. .|.|.|++.+.=+|...|++|+..
T Consensus 137 ~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~f 174 (227)
T KOG0911|consen 137 KAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIF 174 (227)
T ss_pred ccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEE
Confidence 456677775 678999999999999999999876
No 371
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.48 E-value=1.1e+02 Score=26.32 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=21.5
Q ss_pred CCCceeeeccCCCchHH----HHHHHHHhCCCCc
Q psy13369 209 QEGKIRVYSMRFCPYAQ----RVHLILLAKKIPH 238 (311)
Q Consensus 209 ~~~~~~Ly~~~~~~~~~----~~r~~L~~~gi~~ 238 (311)
...++.+|....||+|+ +..-++...+-.+
T Consensus 4 ~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~ 37 (225)
T COG2761 4 MKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEV 37 (225)
T ss_pred ceEEEEEEeCCcCchhhcCHHHHHHHHHhcCcce
Confidence 34578899999999998 5555566666444
No 372
>KOG0910|consensus
Probab=24.88 E-value=2.2e+02 Score=22.77 Aligned_cols=61 Identities=15% Similarity=0.209 Sum_probs=41.8
Q ss_pred CCceeeeccCCCchHHHHHHHHHhCCCC----ceEEEccCCCCchhHHhhCCCCcccEEE--eCCeee
Q psy13369 210 EGKIRVYSMRFCPYAQRVHLILLAKKIP----HDPVFINLNEKPEWYVSSVPTGKVPALK--SEGSIL 271 (311)
Q Consensus 210 ~~~~~Ly~~~~~~~~~~~r~~L~~~gi~----~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~l 271 (311)
.+-+.-|+.+||+-|+-+.=.|++.--+ ++...++.++..+ +.....-.-||+++ .+|...
T Consensus 62 ~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e-la~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 62 VPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE-LAEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred CCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccc-hHhhcceeeeeEEEEEECCEEe
Confidence 3456678889999999777777665544 5566667665433 55556667899998 677553
No 373
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=24.76 E-value=73 Score=21.07 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=16.7
Q ss_pred ceEEEeccC----ChHHHHHHHHHHh
Q psy13369 21 KLRVYSMRF----CPYAQRVHLILLA 42 (311)
Q Consensus 21 ~~~Ly~~~~----sp~~~rv~~~L~~ 42 (311)
+++||-+.. |.||+||-.+|+.
T Consensus 2 ~mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 2 KMKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred cceeeEeecCCchHHHHHHHHHHHhC
Confidence 467776655 4599999998875
No 374
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=24.52 E-value=2.1e+02 Score=20.08 Aligned_cols=53 Identities=8% Similarity=-0.004 Sum_probs=31.5
Q ss_pred CceeeeccCCCchHHHHHHHHHhCC------CCceEEEccCCCCchhHHhhCCCCcccEEE
Q psy13369 211 GKIRVYSMRFCPYAQRVHLILLAKK------IPHDPVFINLNEKPEWYVSSVPTGKVPALK 265 (311)
Q Consensus 211 ~~~~Ly~~~~~~~~~~~r~~L~~~g------i~~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 265 (311)
..+.+|+.++|+.|+...-.+.... ..+....++.... +.........+|++.
T Consensus 20 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~~Pt~~ 78 (104)
T cd02995 20 DVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN--DVPSEFVVDGFPTIL 78 (104)
T ss_pred cEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch--hhhhhccCCCCCEEE
Confidence 3456788899999997665554322 2344555554432 222222337899888
No 375
>PHA03075 glutaredoxin-like protein; Provisional
Probab=24.27 E-value=1.2e+02 Score=23.05 Aligned_cols=35 Identities=11% Similarity=0.207 Sum_probs=31.1
Q ss_pred ceeeeccCCCchHHHHHHHHHhCCCCceEEEccCC
Q psy13369 212 KIRVYSMRFCPYAQRVHLILLAKKIPHDPVFINLN 246 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L~~~gi~~~~~~v~~~ 246 (311)
.+.|++.|.|+-|.-+.-+|....=+|+...|+.-
T Consensus 4 tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIl 38 (123)
T PHA03075 4 TLILFGKPLCSVCESISEALKELEDEYDILRVNIL 38 (123)
T ss_pred eEEEeCCcccHHHHHHHHHHHHhhccccEEEEEee
Confidence 57799999999999999999888889999988744
No 376
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=24.22 E-value=81 Score=25.15 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=20.3
Q ss_pred CCCCceEEEeccCChHHHHHHHHHH
Q psy13369 17 TQEGKLRVYSMRFCPYAQRVHLILL 41 (311)
Q Consensus 17 ~~~~~~~Ly~~~~sp~~~rv~~~L~ 41 (311)
..+-.+..|..+.||+|++..-.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~ 38 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILE 38 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHH
Confidence 3456699999999999999887664
No 377
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=23.91 E-value=2.6e+02 Score=19.57 Aligned_cols=53 Identities=8% Similarity=0.014 Sum_probs=31.3
Q ss_pred ceeeeccCCCchHHHHHHHHHh----CCCCceEEEccCCCCchhHHhhCCCCcccEEE
Q psy13369 212 KIRVYSMRFCPYAQRVHLILLA----KKIPHDPVFINLNEKPEWYVSSVPTGKVPALK 265 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~~r~~L~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 265 (311)
-+..++.++|+.|+...-.+.. ..-.+....++..+. .++.+...-..+|++.
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~i~~~P~~~ 77 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVH-QSLAQQYGVRGFPTIK 77 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcch-HHHHHHCCCCccCEEE
Confidence 4567788899999976544332 111344555555433 3344444456799887
No 378
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=23.47 E-value=82 Score=25.50 Aligned_cols=35 Identities=11% Similarity=0.243 Sum_probs=24.9
Q ss_pred ceEEEeccCChHHHHHHHHHH----hc-CCCeEEeecccccccC
Q psy13369 21 KLRVYSMRFCPYAQRVHLILL----AK-KIPLTIHVPVTQYRLI 59 (311)
Q Consensus 21 ~~~Ly~~~~sp~~~rv~~~L~----~~-gi~~e~~~~~~~v~~~ 59 (311)
+|++|.+..||||....-.|. .. ++.++.+ .+.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~----p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWR----PFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEE----EESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEe----ccccc
Confidence 478999999999987655443 34 7777777 66543
No 379
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=23.05 E-value=86 Score=25.67 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=22.4
Q ss_pred eeeeccCCCchHHHHH----HHHHhC----CCCceEEEccCC
Q psy13369 213 IRVYSMRFCPYAQRVH----LILLAK----KIPHDPVFINLN 246 (311)
Q Consensus 213 ~~Ly~~~~~~~~~~~r----~~L~~~----gi~~~~~~v~~~ 246 (311)
+++|+...||+|.... -++... ++.++.+.+.+.
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L~ 42 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFELN 42 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeeeeC
Confidence 4688999999999444 344444 566666666444
No 380
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=20.86 E-value=1.3e+02 Score=24.36 Aligned_cols=34 Identities=9% Similarity=0.109 Sum_probs=22.4
Q ss_pred ceeeeccCCCchHHH----HHHHHHhC--CCCceEEEccC
Q psy13369 212 KIRVYSMRFCPYAQR----VHLILLAK--KIPHDPVFINL 245 (311)
Q Consensus 212 ~~~Ly~~~~~~~~~~----~r~~L~~~--gi~~~~~~v~~ 245 (311)
++.+|..+.||+|+. ++-+.... +++++.+...+
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~~L 41 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLGGL 41 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEeccc
Confidence 478899999999994 34444444 56666655443
Done!