BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13371
(212 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 20/150 (13%)
Query: 35 SDQRFSAIHRREGDEWTLHIKWAQ-KRDAGVYECQLSTQPVRSFFVNLNVVV-------- 85
S+QRF I +G L I+ + RD +YEC +++ V V+ + V
Sbjct: 48 SNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYEC-VASNNVGEISVSTRLTVLREDQIPR 106
Query: 86 --PTAEILGSPDLHVDEGS-TINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVIT 142
PT ++ P L V E + T + C+ +P+P I W+ + + D+S +
Sbjct: 107 GFPTIDM--GPQLKVVERTRTATMLCAASGNPDP--EITWFK--DFLPVDTSNNNGRIKQ 160
Query: 143 EKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172
+ E + L I+Q+E D GKY C +N+
Sbjct: 161 LRSE-SIGALQIEQSEESDQGKYECVATNS 189
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 31/170 (18%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQ-KRDAGVYEC----- 67
R++W++ S QRF I +G L I+ + +RD +YEC
Sbjct: 38 RITWMKK----------GKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNS 87
Query: 68 --QLSTQPVRSFFV--NLNVVVPTAEILGSPDLHV-DEGSTINLTCSIKYSPEPPAYIFW 122
+++T S L PT ++ P L V ++G T + C+ +P+P I W
Sbjct: 88 LGEINTSAKLSVLEEDQLPSGFPTIDM--GPQLKVVEKGRTATMLCAAGGNPDP--EISW 143
Query: 123 YHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172
+ + +S G + ++ + L I+ +E D GKY C +N+
Sbjct: 144 FKDFLPVDPAASNGRIK------QLRSGALQIESSEESDQGKYECVATNS 187
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Query: 97 HVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK-GEVTTSYLLIQ 155
V EG ++ L C I S PP +FW ++E++ +++ R +S+ + G VT LLI+
Sbjct: 26 KVLEGDSVKLECQI--SAIPPPKLFWKRNNEMVQFNTDR--ISLYQDNTGRVT---LLIK 78
Query: 156 QAELKDSGKYSCSPSN 171
KD+G Y+ S N
Sbjct: 79 DVNKKDAGWYTVSAVN 94
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 25/163 (15%)
Query: 37 QRFSAIHRREGDEWTLHIKWAQ-KRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPD 95
QRF I E L I+ + RD VYEC ++ V V+ + V + L S
Sbjct: 50 QRFETIEFDESAGAVLRIQPLRTPRDENVYEC-VAQNSVGEITVHAKLTVLREDQLPSGF 108
Query: 96 LHVDEGS---------TINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE 146
++D G T + C+ +P+P I W+ + +S G + +
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDP--EITWFKDFLPVDPSASNGRIK------Q 160
Query: 147 VTTSYLLIQQAELKDSGKYSCSPSN------ADVASVYVHVLN 183
+ + L I+ +E D GKY C +N + A++YV V N
Sbjct: 161 LRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQN 203
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 23/123 (18%)
Query: 52 LHIKWAQKRDAGVYEC-QLSTQPVR-----SFFVNLNVVVPTAEILGSPDLH-VDEGSTI 104
L I+ +++ D G YEC ++ VR + +V + V P IL P H + G +
Sbjct: 166 LQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSIL--PMSHEIMPGGNV 223
Query: 105 NLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGK 164
N+TC SP P Y+ W G +T + ++ +++ ++KDS
Sbjct: 224 NITCVAVGSPMP--YVKWMQ------------GAEDLTPEDDMPVGRNVLELTDVKDSAN 269
Query: 165 YSC 167
Y+C
Sbjct: 270 YTC 272
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 74/183 (40%), Gaps = 33/183 (18%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQ-KRDAGVYEC----- 67
R++W++ S QRF I +G L I+ + +RD +YEC
Sbjct: 37 RITWMKK----------GKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNS 86
Query: 68 --QLSTQPVRSFFVNLNVVVPTAEILGSPDLHV-DEGSTINLTCSIKYSPEPPAYIFWYH 124
+++T S + I P L V ++ T + C+ +P+P I W+
Sbjct: 87 LGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDP--EISWFK 144
Query: 125 HDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN------ADVASVY 178
+ +S G + ++ + L I+ +E D GKY C +N + A++Y
Sbjct: 145 DFLPVDPATSNGRIK------QLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLY 198
Query: 179 VHV 181
V V
Sbjct: 199 VRV 201
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 54 IKWAQKRDAGVYECQLSTQPVRSFFVNLN---VVVPTAEILGSPDLHVDEGSTINLTCSI 110
++ A + D G YEC++ST P SF L +V P + P L +G T+ +C+
Sbjct: 83 LRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTA 142
Query: 111 KYSPEPPAYIFWYHHDEVISYDSSR 135
+ SP P + W EV SSR
Sbjct: 143 EGSPAP--SVTW--DTEVKGTTSSR 163
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 25/161 (15%)
Query: 37 QRFSAIHRREGDEWTLHIKWAQ-KRDAGVYECQLSTQPVRSFFVNLNVVVPTAEIL--GS 93
QRF I E L I+ + RD +YEC ++ P V+ + V + L G
Sbjct: 50 QRFETIEFDESAGAVLRIQPLRTPRDENIYEC-VAQNPHGEVTVHAKLTVLREDQLPPGF 108
Query: 94 PDLH-------VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE 146
P++ V+ T + C+ +P+P I W+ + +S G + + G
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDP--EITWFKDFLPVDPSTSNGRIKQLRSGG- 165
Query: 147 VTTSYLLIQQAELKDSGKYSCSPSN------ADVASVYVHV 181
L I+ +E D GKY C SN + A++YV V
Sbjct: 166 -----LQIESSEETDQGKYECVASNSAGVRYSSPANLYVRV 201
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 25/161 (15%)
Query: 37 QRFSAIHRREGDEWTLHIKWAQ-KRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPD 95
QRF I E L I+ + RD VYEC ++ V V+ + V + L S
Sbjct: 50 QRFETIEFDESAGAVLRIQPLRTPRDENVYEC-VAQNSVGEITVHAKLTVLREDQLPSGF 108
Query: 96 LHVDEGS---------TINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE 146
++D G T + C+ +P+P I W+ + +S G + +
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDP--EITWFKDFLPVDPSASNGRIK------Q 160
Query: 147 VTTSYLLIQQAELKDSGKYSCSPSN------ADVASVYVHV 181
+ + L I+ +E D GKY C +N + A++YV V
Sbjct: 161 LRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRV 201
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 25/161 (15%)
Query: 37 QRFSAIHRREGDEWTLHIKWAQ-KRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPD 95
QRF I E L I+ + RD VYEC ++ V V+ + V + L S
Sbjct: 50 QRFETIEFDESAGAVLRIQPLRTPRDENVYEC-VAQNSVGEITVHAKLTVLREDQLPSGF 108
Query: 96 LHVDEGS---------TINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE 146
++D G T + C+ +P+P I W+ + +S G + +
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDP--EITWFKDFLPVDPSASNGRIK------Q 160
Query: 147 VTTSYLLIQQAELKDSGKYSCSPSN------ADVASVYVHV 181
+ + L I+ +E D GKY C +N + A++YV V
Sbjct: 161 LRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRV 201
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQA 157
VDEG T+ C + +PP I W + + S G ++V + G + Y A
Sbjct: 397 VDEGHTVQFVC--RADGDPPPAILWLSPRKHLVSAKSNGRLTVFPD-GTLEVRY-----A 448
Query: 158 ELKDSGKYSCSPSNA---DVASVYVHV 181
+++D+G Y C +NA D ++HV
Sbjct: 449 QVQDNGTYLCIAANAGGNDSMPAHLHV 475
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 17/162 (10%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ- 72
++W R D T G + H +LHIK + D+G Y+C+ +++
Sbjct: 31 EITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS----SLHIKDVKLSDSGRYDCEAASRI 86
Query: 73 --PVRSFFVNLNVVVPTAEILGSPDLHVD-EGSTINLTCSIKYSPEPPAYIFWYHHDEVI 129
+S ++++ + + + ++ EG+ IN++C +K + PPA I W V+
Sbjct: 87 GGHQKSMYLDIEYA---PKFISNQTIYYSWEGNPINISCDVKSN--PPASIHWRRDKLVL 141
Query: 130 SYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
++ + T + + L I D G+Y+C+ +N
Sbjct: 142 PAKNTTNLKTYSTGRKMI----LEIAPTSDNDFGRYNCTATN 179
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISY---DSSRGGVSVITEKGEVTTSYLLIQQ 156
E + L C + P P I W + ++ D S G I KG+ +S L I+
Sbjct: 14 ENGQVTLVCDAEGEPIP--EITWKRAVDGFTFTEGDKSLDGR--IEVKGQHGSSSLHIKD 69
Query: 157 AELKDSGKYSC 167
+L DSG+Y C
Sbjct: 70 VKLSDSGRYDC 80
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 17/162 (10%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ- 72
++W R D T G + H +LHIK + D+G Y+C+ +++
Sbjct: 31 EITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS----SLHIKDVKLSDSGRYDCEAASRI 86
Query: 73 --PVRSFFVNLNVVVPTAEILGSPDLHVD-EGSTINLTCSIKYSPEPPAYIFWYHHDEVI 129
+S ++++ + + + ++ EG+ IN++C +K + PPA I W V+
Sbjct: 87 GGHQKSMYLDIEYA---PKFISNQTIYYSWEGNPINISCDVKSN--PPASIHWRRDKLVL 141
Query: 130 SYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
++ + T + + L I D G+Y+C+ +N
Sbjct: 142 PAKNTTNLKTYSTGRKMI----LEIAPTSDNDFGRYNCTATN 179
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISY---DSSRGGVSVITEKGEVTTSYLLIQQ 156
E + L C + P P I W + ++ D S G I KG+ +S L I+
Sbjct: 14 ENGQVTLVCDAEGEPIPE--ITWKRAVDGFTFTEGDKSLDGR--IEVKGQHGSSSLHIKD 69
Query: 157 AELKDSGKYSC 167
+L DSG+Y C
Sbjct: 70 VKLSDSGRYDC 80
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 88 AEILGS-PDL-HVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145
A +LG PD+ + EG +NLTC++ +PP + W +++ ++ D ++ E G
Sbjct: 222 ARVLGGLPDVVTIQEGKALNLTCNV--WGDPPPEVSWLKNEKALASDDH---CNLKFEAG 276
Query: 146 EVTTSYLLIQQAELKDSGKYSCSPSN 171
T+Y I DSGKY N
Sbjct: 277 R--TAYFTINGVSTADSGKYGLVVKN 300
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 25/136 (18%)
Query: 48 DEWTLHIKWAQKR---------DAGVYECQLST---QPVRSFFVNLNVVVPTAEILGSPD 95
D T H + + KR D GVY C++ +P + V P E
Sbjct: 259 DRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKV 318
Query: 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQ 155
+ V +G + + C + P P + W H+ + +S GG + +T+ G L+I+
Sbjct: 319 IVVKQGQDVTIPCKVTGLPAP--NVVWSHNAKPLS-----GGRATVTDSG------LVIK 365
Query: 156 QAELKDSGKYSCSPSN 171
+ D G Y C +N
Sbjct: 366 GVKNGDKGYYGCRATN 381
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 44/124 (35%), Gaps = 13/124 (10%)
Query: 49 EWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGS-PDLHVDEGSTINLT 107
E TL I D G YEC+ R +V E L D D GS +
Sbjct: 255 EPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEADIGSNLRWG 314
Query: 108 CSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167
C+ P P + W + E ++ + + EV L + L+DSG Y C
Sbjct: 315 CAAAGKPRP--TVRWLRNGEPLASQN----------RVEVLAGDLRFSKLSLEDSGMYQC 362
Query: 168 SPSN 171
N
Sbjct: 363 VAEN 366
>pdb|4I0K|A Chain A, Crystal Structure Of Murine B7-H3 Extracellular Domain
Length = 222
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAE--ILGSPDLHVDEGSTINLTC 108
+L ++ + D G Y C +S Q S V+L V P ++ + P+ + G+ + +TC
Sbjct: 73 SLRLQRVRVTDEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITC 132
Query: 109 SIKYSPEPPAYIFW 122
S Y P A +FW
Sbjct: 133 S-SYQGYPEAEVFW 145
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 88 AEILGS-PDL-HVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145
A +LG PD+ + EG +NLTC++ +PP + W +++ ++ ++ E G
Sbjct: 117 ARVLGGLPDVVTIQEGKALNLTCNV--WGDPPPEVSWLKNEKALAQTDH---CNLKFEAG 171
Query: 146 EVTTSYLLIQQAELKDSGKYSCSPSN 171
T+Y I DSGKY N
Sbjct: 172 R--TAYFTINGVSTADSGKYGLVVKN 195
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 13/129 (10%)
Query: 52 LHIKWAQKRDAGVYECQLSTQPVRSFF---VNLNVVVPTAEILGSPDLHVDEGSTIN--- 105
+ K + D G Y C +S + S+ V L V+VP ++ P +++ +TI
Sbjct: 70 ITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSK----PTVNIPSSATIGNRA 125
Query: 106 -LTCSIKYSPEPPAYIFWYHHDEVISYD-SSRGGVSVITEKGEVTTSYLLIQQAELKDSG 163
LTCS + PP+ W+ V+ + S S + TT L+ D+G
Sbjct: 126 VLTCS-EQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTG 184
Query: 164 KYSCSPSNA 172
+YSC N
Sbjct: 185 EYSCEARNG 193
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 10/101 (9%)
Query: 84 VVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE 143
+ P E L S D+ +DEG + + C+ ++ EP + W I S G I
Sbjct: 6 IPPKIEALPS-DISIDEGKVLTVACA--FTGEPTPEVTWSCGGRKIH--SQEQGRFHIEN 60
Query: 144 KGEVTTSYLLIQQAELKDSGKYSCSPSN---ADVASVYVHV 181
++TT L+I + +D G Y+ S N +D A+V +H+
Sbjct: 61 TDDLTT--LIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 99
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D V EG L CS++ +P P I W + + I Y S E + L I
Sbjct: 20 DCAVIEGQDFVLQCSVRGTPVP--RITWLLNGQPIQYARS---------TCEAGVAELHI 68
Query: 155 QQAELKDSGKYSCSPSNA 172
Q A +D G Y+C NA
Sbjct: 69 QDALPEDHGTYTCLAENA 86
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 16/104 (15%)
Query: 71 TQPVRSFFVNLNVVVPTAEILGSPDLHVDEGS-TINLTCSIKYSPEPPAYIF-WYHHDEV 128
T+P+ S VP L D+ GS T+ L C + P P +F WY E
Sbjct: 239 TEPISS-------AVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVP---VFRWYKFIE- 287
Query: 129 ISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172
++R V+ ++ + + L+I+ A ++DSGKY C +N+
Sbjct: 288 ---GTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNS 328
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 64/165 (38%), Gaps = 21/165 (12%)
Query: 9 GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
G P +++W + + I G+Y T + + TL + K DAG Y C
Sbjct: 31 GTAPIKITWAKD-NREIRPGGNYKMTLVENTA----------TLTVLKVTKGDAGQYTCY 79
Query: 69 LSTQPVR-SFFVNLNVVVPTAEILG-SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD 126
S + S L V P I P V + C I SPE + WY D
Sbjct: 80 ASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYECKIGGSPE--IKVLWYK-D 136
Query: 127 EVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
E +SS+ +S + + + L + ++DSG Y+C N
Sbjct: 137 ETEIQESSKFRMSFVE-----SVAVLEMYNLSVEDSGDYTCEAHN 176
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 24/129 (18%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPV---RSFFVNLNVVV-PTAEILGSPDLHVDEGSTINL 106
TL + + D Y+C+ + PV RS V LNV+ P A + + G +NL
Sbjct: 165 TLTLFNVTRNDTASYKCE-TQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNL 223
Query: 107 TCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166
+C + PPA W+ + + +T L I + +SG Y+
Sbjct: 224 SC--HAASNPPAQYSWF-----------------VNGTFQQSTQELFIPNITVNNSGSYT 264
Query: 167 CSPSNADVA 175
C N+D
Sbjct: 265 CQAHNSDTG 273
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 51 TLHIKWAQKRDAGVYEC--QLSTQPVRSFFVNLNVVV-PTAEILGSPDLHVDEGSTINLT 107
TL + + DA Y C Q S RS V L+V+ P I+ PD G+ +NL+
Sbjct: 521 TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLS 580
Query: 108 CSIKYSPEP 116
C +P P
Sbjct: 581 CHSASNPSP 589
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 10/101 (9%)
Query: 84 VVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE 143
+ P E L S D+ +DEG + + C+ ++ EP + W I S G I
Sbjct: 4 IPPKIEALPS-DISIDEGKVLTVACA--FTGEPTPEVTWSCGGRKIH--SQEQGRFHIEN 58
Query: 144 KGEVTTSYLLIQQAELKDSGKYSCSPSN---ADVASVYVHV 181
++TT L+I + +D G Y+ S N +D A+V +H+
Sbjct: 59 TDDLTT--LIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 103 TINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDS 162
TI+L C + P P WY E ++R V+ ++ + + L+I+ A ++DS
Sbjct: 229 TISLLCPAQGFPAP--SFRWYKFIE----GTTRKQAVVLNDRVKQVSGTLIIKDAVVEDS 282
Query: 163 GKYSCSPSNA 172
GKY C +N+
Sbjct: 283 GKYLCVVNNS 292
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 103 TINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDS 162
TI+L C + P P WY E ++R V+ ++ + + L+I+ A ++DS
Sbjct: 235 TISLLCPAQGFPAP--SFRWYKFIE----GTTRKQAVVLNDRVKQVSGTLIIKDAVVEDS 288
Query: 163 GKYSCSPSNA 172
GKY C +N+
Sbjct: 289 GKYLCVVNNS 298
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 21/129 (16%)
Query: 47 GDEWTLHIKWAQKRDAGVYECQLSTQP-------VRSFFVNLNVVVPTAEILGSPDLHVD 99
D + +K A +D G Y C + VR V L V PT I G+ +
Sbjct: 622 NDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTV-LERVAPT--ITGNLENQTT 678
Query: 100 E-GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAE 158
G +I ++C+ S PP I W+ +E + DS ++ + G L I++
Sbjct: 679 SIGESIEVSCTA--SGNPPPQIMWFKDNETLVEDS-----GIVLKDG---NRNLTIRRVR 728
Query: 159 LKDSGKYSC 167
+D G Y+C
Sbjct: 729 KEDEGLYTC 737
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 52 LHIKWAQKRDAGVYECQLSTQPV----RSFFVNLNVVVPTA---EILGSPDLHVDEGSTI 104
L I +RD G Y L T P+ +S V+L V VP + L SP G+T
Sbjct: 383 LTIMEVSERDTGNYTVIL-TNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQ 441
Query: 105 NLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSV 140
LTC++ Y+ PP +I WY E + VSV
Sbjct: 442 TLTCTV-YAIPPPHHIHWYWQLEEECANEPSQAVSV 476
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELK 160
G +I ++C+ S PP I W+ +E + DS ++ + G L I++ +
Sbjct: 25 GESIEVSCT--ASGNPPPQIMWFKDNETLVEDS-----GIVLKDG---NRNLTIRRVRKE 74
Query: 161 DSGKYSC 167
D G Y+C
Sbjct: 75 DEGLYTC 81
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 28/130 (21%)
Query: 59 KRDAGVYECQLSTQPVRSF---FVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPE 115
++D G Y C +S + +++ ++L V+VP ++ S V G+ LTCS ++
Sbjct: 74 RKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCS-EHDGS 132
Query: 116 PPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY-------------LLIQQAELKDS 162
PP+ W+ + G+S++T + T ++ L+ DS
Sbjct: 133 PPSEYSWF-----------KDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDS 181
Query: 163 GKYSCSPSNA 172
G+Y C N
Sbjct: 182 GEYYCQAQNG 191
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 69/168 (41%), Gaps = 21/168 (12%)
Query: 6 KLKGLLPTRVSWIRHRDIHILTVGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGV 64
+L+G P +VSW H+D L G Y S+ ++IH L++ A D G
Sbjct: 407 ELQGTPPFQVSW--HKDKRELRSGKKYKIMSENFLTSIH-------ILNVDSA---DIGE 454
Query: 65 YECQLSTQPVRSFFV-NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWY 123
Y+C+ S V ++ + P + D+ G + L +I+ + P + W+
Sbjct: 455 YQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAE--PISVAWF 512
Query: 124 HHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
I +S +S + L +AE ++GKY+C N
Sbjct: 513 KDKGEIVRESDNIWISY-----SENIATLQFSRAEPANAGKYTCQIKN 555
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 64/165 (38%), Gaps = 21/165 (12%)
Query: 9 GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
G P +++W + + I G+Y T + + TL + K DAG Y C
Sbjct: 223 GTAPIKITWAKD-NREIRPGGNYKMTLVENTA----------TLTVLKVTKGDAGQYTCY 271
Query: 69 LSTQPVR-SFFVNLNVVVPTAEILG-SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD 126
S + S L V P I P V + C I SPE + WY D
Sbjct: 272 ASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPE--IKVLWYK-D 328
Query: 127 EVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
E +SS+ +S + + + L + ++DSG Y+C N
Sbjct: 329 ETEIQESSKFRMSFVE-----SVAVLEMYNLSVEDSGDYTCEAHN 368
>pdb|1A4J|L Chain L, Diels Alder Catalytic Antibody Germline Precursor
pdb|1A4J|A Chain A, Diels Alder Catalytic Antibody Germline Precursor
Length = 217
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 21/167 (12%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF------VNL 81
Y RFS + R G ++TL I + D GVY C ST +F +
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHVPPTFGGGTKLEIKR 113
Query: 82 NVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVI 141
V P+ I D + G T ++ C + A + W + + S +S +
Sbjct: 114 TVAAPSVFIFPPSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES----V 168
Query: 142 TEKGEVTTSY-----LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
TE+ ++Y L + +A+ + Y+C ++ ++S N
Sbjct: 169 TEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 215
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 52 LHIKWAQKRDAGVYECQLSTQPV----RSFFVNLNVVVPTA---EILGSPDLHVDEGSTI 104
L I +RD G Y L T P+ +S V+L V VP + L SP G+T
Sbjct: 253 LTIMEVSERDTGNYTVIL-TNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQ 311
Query: 105 NLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSV 140
LTC++ Y+ PP +I WY E + VSV
Sbjct: 312 TLTCTV-YAIPPPHHIHWYWQLEEECANEPSQAVSV 346
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 64/165 (38%), Gaps = 21/165 (12%)
Query: 9 GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
G P +++W + + I G+Y T + + TL + K DAG Y C
Sbjct: 31 GTAPIKITWAKD-NREIRPGGNYKMTLVENTA----------TLTVLKVTKGDAGQYTCY 79
Query: 69 LSTQPVR-SFFVNLNVVVPTAEILG-SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD 126
S + S L V P I P V + C I SPE + WY D
Sbjct: 80 ASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPE--IKVLWYK-D 136
Query: 127 EVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
E +SS+ +S + + + L + ++DSG Y+C N
Sbjct: 137 ETEIQESSKFRMSFVE-----SVAVLEMYNLSVEDSGDYTCEAHN 176
>pdb|3UJJ|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 4025 In Complex
With Con A Peptide
Length = 213
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE------VISYDSSR--GGVSV 140
E+ P + V G T +TCS PE Y +WY +I DS R G
Sbjct: 3 ELTQPPSVSVSPGQTARITCSGDALPE--KYAYWYQQKSGQAPVLIIYEDSKRPSGIPER 60
Query: 141 ITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172
+ T + L I A++ D Y C +N+
Sbjct: 61 FSGSRSGTMATLTISGAQVDDEADYYCYSTNS 92
>pdb|3MJ6|A Chain A, Crystal Structure Of The Gammadelta T Cell Costimulatory
Receptor Junctional Adhesion Molecule-Like Protein, Jaml
pdb|3MJ7|A Chain A, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
pdb|3MJ9|A Chain A, Crystal Structure Of Jaml In Complex With The Stimulatory
Antibody Hl4e10
Length = 268
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 30/164 (18%)
Query: 48 DEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNV---VVPTAEILGSPDLHVDEGSTI 104
++ +L ++ QK D G+Y C++ + S + V V+P DL V G T
Sbjct: 82 NDGSLLLQDVQKADEGIYTCEIRLKN-ESMVMKKPVELWVLPEE----PRDLRVRVGDTT 136
Query: 105 NLTCSIKYSPEPPA-YIFWY-----HHDE--VISYDSS-RGGV--------SVITEKGEV 147
+ CSI+ + E + W H +E V+SYDS+ R G + + G++
Sbjct: 137 QMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDI 196
Query: 148 TTS--YLLIQQAELKDSGKYSCSPSNADVAS---VYVHVLNGEY 186
+ + + +Q + D G Y+CS + S + +HV+ E+
Sbjct: 197 SRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEF 240
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 13/121 (10%)
Query: 52 LHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGS-PDLHVDEGSTINLTCSI 110
LHI+ D G YEC+ R + ++ + L D D GS + +C
Sbjct: 259 LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVA 318
Query: 111 KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170
P P + W + ++ + + EV+ L + L+DSG Y C
Sbjct: 319 SGKPRP--AVRWLRDGQPLASQN----------RIEVSGGELRFSKLVLEDSGMYQCVAE 366
Query: 171 N 171
N
Sbjct: 367 N 367
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 62/158 (39%), Gaps = 25/158 (15%)
Query: 19 RHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF 78
+ +DI + + +Q+ ++ + D TL I A DAG+Y+C ++ +
Sbjct: 31 KDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE 90
Query: 79 VNLNVVV---------PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVI 129
+NV + PT + EG + C + S PP I+ + +VI
Sbjct: 91 ATVNVKIFQKLMFKNAPTPQ-------EFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVI 142
Query: 130 SYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167
R V ++ +YL I+ + D G Y C
Sbjct: 143 LKKDVRFIV--------LSNNYLQIRGIKKTDEGTYRC 172
>pdb|1E4K|C Chain C, Crystal Structure Of Soluble Human Igg1 Fc
Fragment-Fc-Gamma Receptor Iii Complex
pdb|1E4J|A Chain A, Crystal Structure Of The Soluble Human Fc-Gamma Receptor
Iii
Length = 176
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 18/84 (21%)
Query: 85 VPTAEILGSPDLH-VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE 143
+P A + P + V E ++ L C YSPE + W+H++ +IS +S
Sbjct: 6 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNS-TQWFHNESLISSQAS--------- 55
Query: 144 KGEVTTSYLLIQQAELKDSGKYSC 167
SY I A + DSG+Y C
Sbjct: 56 ------SY-FIDAATVNDSGEYRC 72
>pdb|1T83|C Chain C, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Orthorhombic)
pdb|1T89|C Chain C, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Hexagonal)
Length = 176
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 18/84 (21%)
Query: 85 VPTAEILGSPDLH-VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE 143
+P A + P + V E ++ L C YSPE + W+H++ +IS +S
Sbjct: 5 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNS-TQWFHNESLISSQAS--------- 54
Query: 144 KGEVTTSYLLIQQAELKDSGKYSC 167
SY I A + DSG+Y C
Sbjct: 55 ------SY-FIDAATVNDSGEYRC 71
>pdb|3AY4|C Chain C, Crystal Structure Of Nonfucosylated Fc Complexed With
Bis-Glycosylated Soluble Form Of Fc Gamma Receptor Iiia
Length = 179
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 21/101 (20%)
Query: 85 VPTAEILGSPDLH-VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE 143
+P A + P + V E ++ L C YSPE + W+H++ +IS +S
Sbjct: 3 LPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQS-TQWFHNESLISSQAS--------- 52
Query: 144 KGEVTTSYLLIQQAELKDSGKYSCS---PSNADVASVYVHV 181
SY I A + DSG+Y C + +D + VH+
Sbjct: 53 ------SY-FIDAATVDDSGEYRCQTQLSTLSDPVQLEVHI 86
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 35 SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS-----TQPVRSFFVNLNVVVPTAE 89
S QR + ++EG L I A DAG+Y CQ + TQ + + + + E
Sbjct: 45 STQR--VVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEA-TVVLEIYQKLTFRE 101
Query: 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSR 135
++ + +G + C + SP PA + YH++EV + +R
Sbjct: 102 VVSPQEFK--QGEDAEVVCRVSSSP-APAVSWLYHNEEVTTISDNR 144
>pdb|1FNL|A Chain A, Crystal Structure Of The Extracellular Domain Of A Human
Fcgriii
Length = 175
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 18/84 (21%)
Query: 85 VPTAEILGSPDLH-VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE 143
+P A + P + V E ++ L C YSPE + W+H++ +IS +S
Sbjct: 5 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNS-TQWFHNESLISSQAS--------- 54
Query: 144 KGEVTTSYLLIQQAELKDSGKYSC 167
SY I A + DSG+Y C
Sbjct: 55 ------SY-FIDAATVNDSGEYRC 71
>pdb|3SGJ|C Chain C, Unique Carbohydrate-Carbohydrate Interactions Are Required
For High Affinity Binding Between Fcgiii And Antibodies
Lacking Core Fucose
pdb|3SGK|C Chain C, Unique CarbohydrateCARBOHYDRATE INTERACTIONS ARE REQUIRED
FOR HIGH Affinity Binding Of Fcgiii And Antibodies
Lacking Core Fucose
Length = 204
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 18/84 (21%)
Query: 85 VPTAEILGSPDLH-VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE 143
+P A + P + V E ++ L C YSPE + W+H++ +IS +S
Sbjct: 5 LPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQS-TQWFHNESLISSQAS--------- 54
Query: 144 KGEVTTSYLLIQQAELKDSGKYSC 167
SY I A + DSG+Y C
Sbjct: 55 ------SY-FIDAATVDDSGEYRC 71
>pdb|3SJV|D Chain D, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SJV|I Chain I, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SJV|N Chain N, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SJV|S Chain S, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SKN|A Chain A, Crystal Structure Of The Rl42 Tcr Unliganded
pdb|3SKN|C Chain C, Crystal Structure Of The Rl42 Tcr Unliganded
pdb|3SKN|E Chain E, Crystal Structure Of The Rl42 Tcr Unliganded
pdb|3SKN|G Chain G, Crystal Structure Of The Rl42 Tcr Unliganded
Length = 203
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
Query: 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE------VISYDSSRGGVSVITEKGEVTT 149
+V EG+T+ C+ YS FWY D ++S SS T + +
Sbjct: 13 FNVPEGATVAFNCT--YSNSASQSFFWYRQDSRKEPKLLMSVYSSGNEDGRFTAQLNRAS 70
Query: 150 SY--LLIQQAELKDSGKYSC 167
Y LLI+ ++L DS Y C
Sbjct: 71 QYISLLIRDSKLSDSATYLC 90
>pdb|1MRC|L Chain L, Preparation, Characterization And Crystallization Of An
Antibody Fab Fragment That Recognizes Rna. Crystal
Structures Of Native Fab And Three Fab-Mononucleotide
Complexes
pdb|1MRD|L Chain L, Preparation, Characterization And Crystallization Of An
Antibody Fab Fragment That Recognizes Rna. Crystal
Structures Of Native Fab And Three Fab-Mononucleotide
Complexes
pdb|1MRE|L Chain L, Preparation, Characterization And Crystallization Of An
Antibody Fab Fragment That Recognizes Rna. Crystal
Structures Of Native Fab And Three Fab-Mononucleotide
Complexes
pdb|1MRF|L Chain L, Preparation, Characterization And Crystallization Of An
Antibody Fab Fragment That Recognizes Rna. Crystal
Structures Of Native Fab And Three Fab-Mononucleotide
Complexes
Length = 219
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLSTQPVRSF 77
Y RFS + R G ++TL I + D GVY C ST R+F
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHVPRTF 103
>pdb|2FBO|J Chain J, Crystal Structure Of The Two Tandem V-Type Regions Of
Vcbp3 (V-Region-Containing Chitin Binding Protein) To
1.85 A
Length = 250
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 37/147 (25%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFF---------------VNLNVVVPTAEILGSPD 95
TL + +D G Y CQ++ +R+ F + NV V TAE+
Sbjct: 91 TLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEV----- 145
Query: 96 LHVDEGSTINLTCSIKYSPEPPAYIFWY------HHDEVISY----DSSRGGVSVITEKG 145
+ VDEG+ I +TC A + WY + E +Y + ++ G++ + +
Sbjct: 146 VQVDEGNDITMTCPCTDCAN--ANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEI 203
Query: 146 EVTTSY-----LLIQQAELKDSGKYSC 167
S+ L+I+ A++ D+G+ C
Sbjct: 204 AGRASFSGARNLVIRAAKITDAGRVWC 230
>pdb|1FL6|L Chain L, The Hapten Complexed Germline Precursor To Sulfide Oxidase
Catalytic Antibody 28b4
pdb|1FL6|A Chain A, The Hapten Complexed Germline Precursor To Sulfide Oxidase
Catalytic Antibody 28b4
pdb|1FL5|L Chain L, The Unliganded Germline Precursor To The Sulfide Oxidase
Catalytic Antibody 28b4.
pdb|1FL5|A Chain A, The Unliganded Germline Precursor To The Sulfide Oxidase
Catalytic Antibody 28b4
Length = 217
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 21/167 (12%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF------VNL 81
Y RFS + R G ++TL I + D GVY C + R+F +
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPRTFGGGTKLEIKR 113
Query: 82 NVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVI 141
V P+ I D + G T ++ C + A + W + + S +S +
Sbjct: 114 TVAAPSVFIFPPSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES----V 168
Query: 142 TEKGEVTTSY-----LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
TE+ ++Y L + +A+ + Y+C ++ ++S N
Sbjct: 169 TEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 215
>pdb|2NX5|D Chain D, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|2NX5|I Chain I, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|2NX5|N Chain N, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|2NX5|T Chain T, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
Length = 188
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 19/87 (21%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWY--HHDEV---ISYDSSRGGVSVITEKGEVTT 149
++ EG+ + + C+ Y +FWY H E +SY+ G + EKG ++
Sbjct: 8 EMTATEGAIVQINCT--YQTSGFNGLFWYQQHAGEAPTFLSYNVLDG----LEEKGRFSS 61
Query: 150 --------SYLLIQQAELKDSGKYSCS 168
SYLL+++ ++KDS Y C+
Sbjct: 62 FLSRSKGYSYLLLKELQMKDSASYLCA 88
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 42 IHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILG-----SPDL 96
+ ++EG L I A DAG+Y CQ + + VV+ + L SP
Sbjct: 52 VVQKEGVRSRLTIYNANIEDAGIYRCQATD--AKGQTQEATVVLEIYQKLTFREVVSPQ- 108
Query: 97 HVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSR 135
+G + C + SP PA + YH++EV + +R
Sbjct: 109 EFKQGEDAEVVCRVSSSP-APAVSWLYHNEEVTTISDNR 146
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQ 155
+ V+ S+ +L C + P P WY E ++R V+ ++ + + L+I+
Sbjct: 225 IDVELASSYSLLCMAQSYPTP--SFRWYKFIE----GTTRKQAVVLNDRVKQVSGTLIIK 278
Query: 156 QAELKDSGKYSCSPSNA 172
A ++DSGKY C +N+
Sbjct: 279 DAVVEDSGKYLCVVNNS 295
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 62/158 (39%), Gaps = 25/158 (15%)
Query: 19 RHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF 78
+ +DI + + +Q+ ++ + D TL I A DAG+Y+C ++ +
Sbjct: 31 KDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE 90
Query: 79 VNLNVVV---------PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVI 129
+NV + PT + EG + C + S PP I+ + +VI
Sbjct: 91 ATVNVKIFQKLMFKNAPTPQ-------EFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVI 142
Query: 130 SYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167
R V ++ +YL I+ + D G Y C
Sbjct: 143 LKKDVRFIV--------LSNNYLQIRGIKKTDEGTYRC 172
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 15/127 (11%)
Query: 52 LHIKWAQKRDAGVYECQ---LSTQPVRSFFVNLNVVV---PTAEILGS-PDLHVDEGSTI 104
L I+ +K D G Y C+ L+ + F ++ V+V PT + S + + G ++
Sbjct: 157 LQIRGIKKTDEGTYRCEGRILARGEIN--FKDIQVIVNVPPTVQARQSIVNATANLGQSV 214
Query: 105 NLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGK 164
L C PEP + W E I + + ++ +S L I+ + D +
Sbjct: 215 TLVCDADGFPEP--TMSWTKDGEPIENEEEDDEKHIFSDD----SSELTIRNVDKNDEAE 268
Query: 165 YSCSPSN 171
Y C N
Sbjct: 269 YVCIAEN 275
>pdb|2NW2|A Chain A, Crystal Structure Of Els4 Tcr At 1.4a
Length = 200
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 19/87 (21%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWY--HHDEV---ISYDSSRGGVSVITEKGEVTT 149
++ EG+ + + C+ Y +FWY H E +SY+ G + EKG ++
Sbjct: 8 EMTATEGAIVQINCT--YQTSGFNGLFWYQQHAGEAPTFLSYNVLDG----LEEKGRFSS 61
Query: 150 --------SYLLIQQAELKDSGKYSCS 168
SYLL+++ ++KDS Y C+
Sbjct: 62 FLSRSKGYSYLLLKELQMKDSASYLCA 88
>pdb|2EO1|A Chain A, Solution Structure Of The Ig Domain Of Human Obscn Protein
Length = 102
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
++ + G++ L+C + + + WY + +S SS+ V + T L++
Sbjct: 20 EVQAEAGASATLSCEV---AQAQTEVTWYKDGKKLS-SSSKVRVEAVG-----CTRRLVV 70
Query: 155 QQAELKDSGKYSCSPSN 171
QQA ++G+YSC
Sbjct: 71 QQAGQAEAGEYSCEAGG 87
>pdb|4HPY|L Chain L, Crystal Structure Of Rv144-elicited Antibody Ch59 In
Complex With V2 Peptide
Length = 215
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Query: 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE------VISYDSSR--GGVSV 140
E+ P + V G T +TCS P+ Y +WY VI DS R G
Sbjct: 4 ELTQPPSVSVSPGQTARITCSGDALPK--NYAYWYQQKSGQAPVLVIYEDSKRPSGIPER 61
Query: 141 ITEKGEVTTSYLLIQQAELKDSGKYSC 167
+ T + L I A+++D Y C
Sbjct: 62 FSGSSSGTMATLTISGAQVEDEADYYC 88
>pdb|4DZB|A Chain A, Mucosal-Associated Invariant T Cell Receptor,
Valpha7.2jalpha33-Vbeta2
Length = 203
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 19/87 (21%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWY--HHDEV---ISYDSSRGGVSVITEKGEVTT 149
++ EG+ + + C+ Y +FWY H E +SY+ G + EKG ++
Sbjct: 9 EMTATEGAIVQINCT--YQTSGFNGLFWYQQHAGEAPTFLSYNVLDG----LEEKGRFSS 62
Query: 150 --------SYLLIQQAELKDSGKYSCS 168
SYLL+++ ++KDS Y C+
Sbjct: 63 FLSRSKGYSYLLLKELQMKDSASYLCA 89
>pdb|3IBR|A Chain A, Crystal Structure Of P. Aeruginosa Bacteriophytochrome
Photosensory Core Module Mutant Q188l In The Mixed PrPFR
STATE
pdb|3IBR|B Chain B, Crystal Structure Of P. Aeruginosa Bacteriophytochrome
Photosensory Core Module Mutant Q188l In The Mixed PrPFR
STATE
Length = 505
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSI 110
TL I+ +R AG +L P R + N P+ + SPD G +I
Sbjct: 363 TLSIRGDFERQAGNVLQRLQRDPERDIYHTDNWPQPSED---SPD-----GGDCCGVLAI 414
Query: 111 KYSPEPPAYIFWYHHDEV 128
++ + +IFW+ H+EV
Sbjct: 415 RFHRQESGWIFWFRHEEV 432
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
Query: 103 TINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDS 162
T L+C SP P I W ++S SR ++ L I+ A+L D+
Sbjct: 25 TFVLSCVATGSPVP--TILWRKDGVLVSTQDSR--------IKQLENGVLQIRYAKLGDT 74
Query: 163 GKYSC---SPSNADVASVYVHV 181
G+Y+C +PS S Y+ V
Sbjct: 75 GRYTCIASTPSGEATWSAYIEV 96
>pdb|3C2W|A Chain A, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|B Chain B, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|C Chain C, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|D Chain D, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|E Chain E, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|F Chain F, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|G Chain G, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|H Chain H, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3NHQ|A Chain A, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|B Chain B, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|C Chain C, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|D Chain D, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|E Chain E, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|F Chain F, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|G Chain G, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|H Chain H, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NOP|C Chain C, Light-Induced Intermediate Structure L1 Of Pseudomonas
Aeruginosa Bacteriophytochrome
pdb|3NOT|C Chain C, Light-Induced Intermediate Structure L2 Of P. Aeruginosa
Bacteriophytochrome
pdb|3NOU|C Chain C, Light-Induced Intermediate Structure L3 Of P. Aeruginosa
Bacteriophytochrome
Length = 505
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSI 110
TL I+ +R AG +L P R + N P+ + SPD G +I
Sbjct: 363 TLSIRGDFERQAGNVLQRLQRDPERDIYHTDNWPQPSED---SPD-----GGDCCGVLAI 414
Query: 111 KYSPEPPAYIFWYHHDEV 128
++ + +IFW+ H+EV
Sbjct: 415 RFHRQESGWIFWFRHEEV 432
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISY-DSSRGGVSVITEKGE--VTTSYLLIQQA 157
G T L C ++ EPP + W +++ DS++ V + ++ + + S L I
Sbjct: 17 GLTGTLRCQLQVQGEPPE-VHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSL 75
Query: 158 ELKDSGKYSC 167
+L D+G+Y C
Sbjct: 76 QLSDTGQYQC 85
>pdb|3G6O|A Chain A, Crystal Structure Of P. Aeruginosa Bacteriophytochrome
Pabphp Photosensory Core Domain Mutant Q188l
pdb|3G6O|B Chain B, Crystal Structure Of P. Aeruginosa Bacteriophytochrome
Pabphp Photosensory Core Domain Mutant Q188l
Length = 505
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSI 110
TL I+ +R AG +L P R + N P+ + SPD G +I
Sbjct: 363 TLSIRGDFERQAGNVLQRLQRDPERDIYHTDNWPQPSED---SPD-----GGDCCGVLAI 414
Query: 111 KYSPEPPAYIFWYHHDEV 128
++ + +IFW+ H+EV
Sbjct: 415 RFHRQESGWIFWFRHEEV 432
>pdb|1YPZ|E Chain E, Immune Receptor
pdb|1YPZ|G Chain G, Immune Receptor
Length = 207
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 65/169 (38%), Gaps = 24/169 (14%)
Query: 15 VSWIRHRD----IHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70
V W R I + + S T + + SA +E TLHI+ AQ D+G Y C
Sbjct: 32 VQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAAD 91
Query: 71 TQPVRS----------FFVNLNVVV-PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAY 119
T + F V V P ++ P + + + T N+ C +K
Sbjct: 92 TWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFIMKNGT-NVACLVKDFYPKEVT 150
Query: 120 IFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168
I +++ +D + VI+ G+ Y ++ + DS +CS
Sbjct: 151 ISLRSSKKIVEFDPA----IVISPSGK----YSAVKLGQYGDSNSVTCS 191
>pdb|1I85|A Chain A, Crystal Structure Of The Ctla-4B7-2 Complex
pdb|1I85|B Chain B, Crystal Structure Of The Ctla-4B7-2 Complex
pdb|1NCN|A Chain A, The Receptor-Binding Domain Of Human B7-2
pdb|1NCN|B Chain B, The Receptor-Binding Domain Of Human B7-2
Length = 110
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 32 TYTSDQRFSAIHRR-------EGDEWTLHIKWAQKRDAGVYEC 67
Y ++F ++H + + D WTL + Q +D G+Y+C
Sbjct: 44 VYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQC 86
>pdb|1QKZ|L Chain L, Fab Fragment (Mn14c11.6) In Complex With A Peptide
Antigen Derived From Neisseria Meningitidis P1.7
Serosubtype Antigen And Domain Ii From Streptococcal
Protein G
Length = 217
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLST 71
YT RFS + R G ++TL I + D GVY C ST
Sbjct: 54 YTVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQST 97
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 20/90 (22%)
Query: 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY 151
G DL V G I L C+ P ++ W ++ E E +
Sbjct: 42 GKSDLIVRVGDEIRLLCT------DPGFVKWTFE--------------ILDETNENKQNE 81
Query: 152 LLIQQAELKDSGKYSCSPSNADVASVYVHV 181
+ ++AE ++GKY+C+ + S+YV V
Sbjct: 82 WITEKAEATNTGKYTCTNKHGLSNSIYVFV 111
>pdb|4I77|L Chain L, Lebrikizumab Fab Bound To Il-13
Length = 218
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 18/157 (11%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF------VNLNVVVPTAEIL 91
RFS G ++TL I Q D VY CQ + + R+F + V P+ I
Sbjct: 65 RFSG--SGSGTDFTLTISSLQAEDVAVYYCQQNNEDPRTFGGGTKVEIKRTVAAPSVFIF 122
Query: 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY 151
D + G T ++ C + A + W + + S +S +TE+ ++Y
Sbjct: 123 PPSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES----VTEQDSKDSTY 177
Query: 152 -----LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
L + +A+ + Y+C ++ ++S N
Sbjct: 178 SLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 214
>pdb|1MNU|L Chain L, Unliganded Bactericidal Antibody Against Neisseria
Meningitidis
pdb|2MPA|L Chain L, Bactericidal Antibody Against Neisseria Meningitidis
pdb|1MPA|L Chain L, Bactericidal Antibody Against Neisseria Meningitidis
Length = 219
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLSTQPVRSF 77
Y RFS + R G ++TL I + D GV+ C ST R+F
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVFFCSQSTHVPRTF 103
>pdb|3O2V|L Chain L, Crystal Structure Of 1e9 Phel89serLEUH47TRPMETH100BPHE, AN
Engineered Diels-Alderase Fab With Modified Specificity
And Catalytic Activity
pdb|3O2W|L Chain L, Crystal Structure Of The 1e9 Phel89serLEUH47TRPMETH100BPHE
FAB IN Complex With A 39a11 Transition State Analog
Length = 219
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 21/167 (12%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF------VNL 81
Y RFS + R G ++ L I + D GVY C ST +F +
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFILKISRVEAEDLGVYFCSQSTHFFPTFGGGTKLEIKR 113
Query: 82 NVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVI 141
V P+ I D + G T ++ C + A + W + + S +S +
Sbjct: 114 TVAAPSVFIFPPSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES----V 168
Query: 142 TEKGEVTTSY-----LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
TE+ ++Y L + +A+ + Y+C ++ ++S N
Sbjct: 169 TEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 215
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 20/90 (22%)
Query: 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY 151
G DL V G I L C+ P ++ W ++ E E +
Sbjct: 17 GKSDLIVRVGDEIRLLCT------DPGFVKWTFE--------------ILDETNENKQNE 56
Query: 152 LLIQQAELKDSGKYSCSPSNADVASVYVHV 181
+ ++AE ++GKY+C+ + S+YV V
Sbjct: 57 WITEKAEATNTGKYTCTNKHGLSNSIYVFV 86
>pdb|3GSN|A Chain A, Crystal Structure Of The Public Ra14 Tcr In Complex With
The Hcmv Dominant NlvHLA-A2 Epitope
Length = 199
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 14/84 (16%)
Query: 96 LHVDEGSTINLTCSIKYSPEPPAY-IFWYHHDEV----------ISYDSSRGGVSVITEK 144
LHV EG + N TCS P Y + WY + ++ D + G T
Sbjct: 10 LHVQEGDSTNFTCSF---PSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLN 66
Query: 145 GEVTTSYLLIQQAELKDSGKYSCS 168
+ SYL I+ ++ +DS Y C+
Sbjct: 67 TKEGYSYLYIKGSQPEDSATYLCA 90
>pdb|4FOM|A Chain A, Crystal Structure Of Human Nectin-3 Full Ectodomain
(D1-D3)
Length = 308
Score = 30.0 bits (66), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 61 DAGVYECQLSTQPVRSFFVNLNVVV---PTAEILGSPDLHVDEGSTINLTCSIKYSPEPP 117
D+G Y C+ T P+ + + V V PT ++ PD +D G+ I + +P
Sbjct: 85 DSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPV 144
Query: 118 AYIFW 122
A+I W
Sbjct: 145 AHIDW 149
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 30.0 bits (66), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 25/135 (18%)
Query: 44 RREGDEWTLHIKWAQKRDAGVYECQLSTQPVR-------SFFVNLNVVVPTAEILGSPDL 96
RR L I Q+ DAG YEC + +F+ N V +I+ D+
Sbjct: 252 RRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWV----QIIN--DI 305
Query: 97 HVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQ 156
HV ++ C P+ P Y + + D +++ D + ++ L I
Sbjct: 306 HVAMEESVFWECKANGRPK-PTYRWLKNGDPLLTRD-----------RIQIEQGTLNITI 353
Query: 157 AELKDSGKYSCSPSN 171
L D+G Y C N
Sbjct: 354 VNLSDAGMYQCVAEN 368
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 30.0 bits (66), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 25/135 (18%)
Query: 44 RREGDEWTLHIKWAQKRDAGVYECQLSTQPVR-------SFFVNLNVVVPTAEILGSPDL 96
RR L I Q+ DAG YEC + +F+ N V +I+ D+
Sbjct: 251 RRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWV----QIIN--DI 304
Query: 97 HVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQ 156
HV ++ C P+ P Y + + D +++ D + ++ L I
Sbjct: 305 HVAMEESVFWECKANGRPK-PTYRWLKNGDPLLTRD-----------RIQIEQGTLNITI 352
Query: 157 AELKDSGKYSCSPSN 171
L D+G Y C N
Sbjct: 353 VNLSDAGMYQCVAEN 367
>pdb|2FL5|L Chain L, Cofactor-Containing Antibodies: Crystal Structure Of The
Original Yellow Antibody
pdb|2FL5|A Chain A, Cofactor-Containing Antibodies: Crystal Structure Of The
Original Yellow Antibody
pdb|2FL5|C Chain C, Cofactor-Containing Antibodies: Crystal Structure Of The
Original Yellow Antibody
pdb|2FL5|E Chain E, Cofactor-Containing Antibodies: Crystal Structure Of The
Original Yellow Antibody
Length = 209
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 14/89 (15%)
Query: 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE------VISYDSSRGGVSVIT 142
E+ P + V G T +TCS P+ Y +WY V+ DS R S I
Sbjct: 3 ELKQPPSVSVSPGQTARITCSGDVLPK--KYAYWYQERSGQAPVLVVYEDSGR--PSEIP 58
Query: 143 EK----GEVTTSYLLIQQAELKDSGKYSC 167
E+ T + L I A+++D Y C
Sbjct: 59 ERFSGSSSGTKATLTISGAQVEDEADYYC 87
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
DL V + L C ++ PEP I W+ E +S + + + K Y +
Sbjct: 18 DLVVKKNEPATLNCKVEGKPEP--TIEWFKDGEPVSTNEKKS--HRVQFKDGALFFYRTM 73
Query: 155 QQAELKDSGKYSCSPSNADVASVYVHV 181
Q + +D G+Y C N +V H
Sbjct: 74 QGKKEQDGGEYWCVAKNRVGQAVSRHA 100
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
DL V + L C ++ PEP I W+ E +S + + + K Y +
Sbjct: 18 DLVVKKNEPATLNCKVEGKPEP--TIEWFKDGEPVSTNEKKS--HRVQFKDGALFFYRTM 73
Query: 155 QQAELKDSGKYSCSPSNADVASVYVHV 181
Q + +D G+Y C N +V H
Sbjct: 74 QGKKEQDGGEYWCVAKNRVGQAVSRHA 100
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like Domain(2826-2915)
From Human Obscurin
Length = 103
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 18/100 (18%)
Query: 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVI----SYDSSRGGVSVI 141
P A I D V G + L C + + P + W + I YD V+
Sbjct: 8 PAAIIKPLEDQWVAPGEDVELRCELSRAGTP---VHWLKDRKAIRKSQKYD-------VV 57
Query: 142 TEKGEVTTSYLLIQQAELKDSGKYSCS-PSNADVASVYVH 180
E T + L+I+ A LKD+G+Y+C ++ AS++V
Sbjct: 58 CEG---TMAMLVIRGASLKDAGEYTCEVEASKSTASLHVE 94
>pdb|3BGD|A Chain A, Thiopurine S-Methyltransferase
pdb|3BGD|B Chain B, Thiopurine S-Methyltransferase
pdb|3BGI|A Chain A, Thiopurine S-Methyltransferase
pdb|3BGI|B Chain B, Thiopurine S-Methyltransferase
Length = 260
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVV---PTAEILGSPDLHVDEGSTINLT 107
+ +KW R V ++S +R FF N+ P AEI G+ GS
Sbjct: 88 AIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYC 147
Query: 108 CSI 110
CSI
Sbjct: 148 CSI 150
>pdb|1A4K|L Chain L, Diels Alder Catalytic Antibody With Transition State
Analogue
pdb|1A4K|A Chain A, Diels Alder Catalytic Antibody With Transition State
Analogue
Length = 217
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 21/167 (12%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF------VNL 81
Y RFS + R G ++TL I + D GVY C T +F +
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQVTHVPPTFGGGTKLEIKR 113
Query: 82 NVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVI 141
V P+ I D + G T ++ C + A + W + + S +S +
Sbjct: 114 TVAAPSVFIFPPSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES----V 168
Query: 142 TEKGEVTTSY-----LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
TE+ ++Y L + +A+ + Y+C ++ ++S N
Sbjct: 169 TEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 215
>pdb|3OQ3|B Chain B, Structural Basis Of Type-I Interferon Sequestration By A
Poxvirus Decoy Receptor
Length = 329
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 24/130 (18%)
Query: 45 REGDEWTLHIKWAQKRDAGVYECQLSTQP-------VRSFFVNLNVVVPTAEILGSPDLH 97
+ GD W + + Y C ++T+ VRS +P LG+ D +
Sbjct: 87 KNGDLWIAN--YTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKY 144
Query: 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQA 157
I+L C I Y+ I WY +++ + D ++ ++ G+ L+I
Sbjct: 145 -----GIDLYCGILYAKHYNN-ITWYKNNQELIIDGTK-----YSQSGQ----NLIIHNP 189
Query: 158 ELKDSGKYSC 167
EL+DSG+Y C
Sbjct: 190 ELEDSGRYDC 199
>pdb|2GB4|A Chain A, Crystal Structure Of Thiopurine Methyltransferase
(18204406) From Mus Musculus At 1.35 A Resolution
pdb|2GB4|B Chain B, Crystal Structure Of Thiopurine Methyltransferase
(18204406) From Mus Musculus At 1.35 A Resolution
Length = 252
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVV---PTAEILGSPDLHVDEGSTINLT 107
+ +KW R V ++S +R FF N+ P AEI G+ GS
Sbjct: 80 AIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYC 139
Query: 108 CSI 110
CSI
Sbjct: 140 CSI 142
>pdb|4HCR|L Chain L, Crystal Structure Of Human Madcam-1 D1d2 Complexed With
Fab Pf-547659
pdb|4HCR|N Chain N, Crystal Structure Of Human Madcam-1 D1d2 Complexed With
Fab Pf-547659
Length = 219
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 21/167 (12%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF------VNL 81
Y RFS + R G ++TL I + D G+Y C + Q +F +
Sbjct: 54 YEVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGIYYCMQNIQLPWTFGQGTKVEIKR 113
Query: 82 NVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVI 141
V P+ I D + G T ++ C + A + W + + S +S +
Sbjct: 114 TVAAPSVFIFPPSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES----V 168
Query: 142 TEKGEVTTSY-----LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
TE+ ++Y L + +A+ + Y+C ++ ++S N
Sbjct: 169 TEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 215
>pdb|2YWY|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|B Chain B, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|C Chain C, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|D Chain D, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 113
Score = 30.0 bits (66), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 101 GSTINLTCSIKYSPEPPAYIFWYH------HDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
G ++ + C++K + + WY +++ IS GG V T + L I
Sbjct: 15 GESLTINCALKNAADDLERTDWYRTTLGSTNEQKISI----GGRYVETVNKGSKSFSLRI 70
Query: 155 QQAELKDSGKYSCSPSNADVASVYVHVLNGE 185
+ ++DSG Y C +D S Y + + GE
Sbjct: 71 RDLRVEDSGTYKCGAYFSDAMSNYSYPIPGE 101
>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
Length = 290
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 19/87 (21%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+L V+ G T++LTC P+ + F + +E++ E + +
Sbjct: 21 ELIVEAGDTLSLTC---IDPDFVRWTFKTYFNEMV----------------ENKKNEWIQ 61
Query: 155 QQAELKDSGKYSCSPSNADVASVYVHV 181
++AE +G Y+CS SN +S+YV V
Sbjct: 62 EKAEATRTGTYTCSNSNGLTSSIYVFV 88
>pdb|3AAZ|B Chain B, Crystal Structure Of The Humanized Recombinant Fab
Fragment Of A Murine; Antibody
pdb|3AAZ|L Chain L, Crystal Structure Of The Humanized Recombinant Fab
Fragment Of A Murine; Antibody
Length = 229
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 21/167 (12%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYEC-QLSTQPV-----RSFFVNL 81
Y RFS + R G ++TL I + D GVY C Q S P+ +
Sbjct: 54 YQVSTRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQASLVPLTFGQGTKLEIKR 113
Query: 82 NVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVI 141
V P+ I D + G T ++ C + A + W + + S +S +
Sbjct: 114 TVAAPSVFIFPPSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES----V 168
Query: 142 TEKGEVTTSY-----LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
TE+ ++Y L + +A+ + Y+C ++ ++S N
Sbjct: 169 TEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 215
>pdb|3RPI|L Chain L, Crystal Structure Of Fab From 3bnc60, Highly Potent
Anti-Hiv Antibody
pdb|3RPI|B Chain B, Crystal Structure Of Fab From 3bnc60, Highly Potent
Anti-Hiv Antibody
Length = 206
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 14/153 (9%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLN--VVVPTAEILGSPD 95
RFS RR G E+ L I Q D Y CQ+ V ++L V P+ I D
Sbjct: 57 RFSG--RRWGQEYNLTINNLQPEDVATYFCQVYEFIVPGTRLDLKRTVAAPSVFIFPPSD 114
Query: 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY---- 151
+ G T ++ C + A + W + + S +S +TE+ ++Y
Sbjct: 115 EQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES----VTEQDSKDSTYSLSS 169
Query: 152 -LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
L + +A+ + Y+C ++ ++S N
Sbjct: 170 TLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 202
>pdb|1IT9|L Chain L, Crystal Structure Of An Antigen-Binding Fragment From A
Humanized Version Of The Anti-Human Fas Antibody Hfe7a
Length = 214
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 18/157 (11%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF------VNLNVVVPTAEIL 91
RFS G ++TL I + D VY CQ S + R+F + V P+ I
Sbjct: 65 RFSG--SGSGTDFTLTISRLEPEDFAVYYCQQSNEDPRTFGQGTKLEIKRTVAAPSVFIF 122
Query: 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY 151
D + G T ++ C + A + W + + S +S +TE+ ++Y
Sbjct: 123 PPSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES----VTEQDSKDSTY 177
Query: 152 -----LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
L + +A+ + Y+C ++ ++S N
Sbjct: 178 SLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 214
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 17/113 (15%)
Query: 19 RHRDIHILTVGSYTYTSDQRFSAIHRREGDEWT--LHIKWAQKRDAGVYECQLS------ 70
DI + G+ DQ + + + W L +K ++ DAG Y CQ+
Sbjct: 30 EEPDIQWVKDGAVVQNLDQLYIPVSEQH---WIGFLSLKSVERSDAGRYWCQVEDGGETE 86
Query: 71 -TQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFW 122
+QPV + V T E DL V + L+C PEP ++W
Sbjct: 87 ISQPV--WLTVEGVPFFTVE---PKDLAVPPNAPFQLSCEAVGPPEPVTIVWW 134
>pdb|2CR6|A Chain A, Solution Structure Of The Ig Domain (2998-3100) Of Human
Obscurin
Length = 115
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFW----YHHDEVISYDSSRGGVSVITEKGEVTTS 150
D+ V EGS+ C I + P + F H +E+ D+ GG V+T
Sbjct: 22 DVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLT-------- 73
Query: 151 YLLIQQAELKDSG 163
++Q LKDSG
Sbjct: 74 ---LRQLALKDSG 83
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D+ V EGS C ++ P+P + W+ D + SR E+G + L I
Sbjct: 50 DMEVVEGSAARFDCKVEGYPDP--EVMWFKDDNPVK--ESRHFQIDYDEEGNCS---LTI 102
Query: 155 QQAELKDSGKYSCSPSNA 172
+ D KY+C N+
Sbjct: 103 SEVCGDDDAKYTCKAVNS 120
>pdb|2O5X|L Chain L, Crystal Structure Of 1e9 Leuh47trpARGH100TRP, AN
ENGINEERED DIELS- Alderase Fab With Nm Steroid-Binding
Affinity
pdb|2O5Y|L Chain L, Crystal Structure Of The 1e9 Leuh47trpARGH100TRP FAB
PROGESTERONE Complex
pdb|2O5Z|L Chain L, Crystal Structure Of The 1e9 Leuh47trpARGH100TRP FAB
5-Beta- Androstane-3,17-Dione Complex
Length = 219
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 21/167 (12%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF------VNL 81
Y RFS + R G ++ L I + D GVY C ST +F +
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFILKISRVEAEDLGVYFCFQSTHFFPTFGGGTKLEIKR 113
Query: 82 NVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVI 141
V P+ I D + G T ++ C + A + W + + S +S +
Sbjct: 114 TVAAPSVFIFPPSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES----V 168
Query: 142 TEKGEVTTSY-----LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
TE+ ++Y L + +A+ + Y+C ++ ++S N
Sbjct: 169 TEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 215
>pdb|1DLF|L Chain L, High Resolution Crystal Structure Of The Fv Fragment
From An Anti-Dansyl Switch Variant Antibody Igg2a(S)
Crystallized At Ph 5.25
pdb|2DLF|L Chain L, High Resolution Crystal Structure Of The Fv Fragment
From An Anti-Dansyl Switch Variant Antibody Igg2a(S)
Crystallized At Ph 6.75
pdb|1WZ1|L Chain L, Crystal Structure Of The Fv Fragment Complexed With
Dansyl- Lysine
Length = 113
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLST 71
Y RFS + R G ++TL I + D GVY C ST
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQST 97
>pdb|1IQW|L Chain L, Crystal Structure Of The Fab Fragment Of The Mouse Anti-
Human Fas Antibody Hfe7a
Length = 218
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSF 77
RFS G ++TL+I ++ DA Y CQ S + R+F
Sbjct: 65 RFSG--SGSGTDFTLNIHPVEEEDAATYYCQQSNEDPRTF 102
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D+ V EGS C ++ P+P + W+ D + SR E+G + L I
Sbjct: 50 DMDVVEGSAARFDCKVEGYPDP--EVMWFKDDNPVK--ESRHFQIDYDEEGNCS---LTI 102
Query: 155 QQAELKDSGKYSCSPSNA 172
+ D KY+C N+
Sbjct: 103 SEVCGDDDAKYTCKAVNS 120
>pdb|4H1L|G Chain G, Tcr Interaction With Peptide Mimics Of Nickel Offers
Structural Insights In Nickel Contact Allergy
pdb|4H1L|I Chain I, Tcr Interaction With Peptide Mimics Of Nickel Offers
Structural Insights In Nickel Contact Allergy
Length = 113
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 94 PDLH--VDEGSTINLTCSIKYSPEPPAYIFWY 123
PD+H V EG+++ L C+ Y Y+FWY
Sbjct: 6 PDIHITVSEGASLELRCNYSYGAT--PYLFWY 35
>pdb|1H5B|C Chain C, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 15 VSWIRHRD----IHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67
V W R I + + S T + + SA +E TLHI+ AQ D+G Y C
Sbjct: 32 VQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFC 88
>pdb|1H5B|B Chain B, T Cell Receptor Valpha11 (Av11s5) Domain
pdb|1H5B|D Chain D, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 15 VSWIRHRD----IHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67
V W R I + + S T + + SA +E TLHI+ AQ D+G Y C
Sbjct: 32 VQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFC 88
>pdb|1QFU|L Chain L, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
Length = 217
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPT 87
Y RFS + R G ++TL I + D GVY C +T +F + +
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQNTHVPYTFGGGTKLEIKR 113
Query: 88 AEILGSPDLHVDEGSTINLT 107
A+ +P + + S I LT
Sbjct: 114 AD--AAPTVSIFPPSKIQLT 131
>pdb|1YC7|A Chain A, Caban33 Vhh Fragment Against Vsg
pdb|1YC7|B Chain B, Caban33 Vhh Fragment Against Vsg
Length = 124
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 14/93 (15%)
Query: 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE--------------VISYDSS 134
+++ S V G ++ L+C++ S P WY I Y S
Sbjct: 3 QLVESGGGSVQAGGSLRLSCAVSGSTYSPCTTGWYRQAPGKEREWVSSISSPGTIYYQDS 62
Query: 135 RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167
G I+ T YL + + +D+G Y C
Sbjct: 63 VKGRFTISRDNAKNTVYLQMNSLQREDTGMYYC 95
>pdb|3PL6|C Chain C, Structure Of Autoimmune Tcr Hy.1b11 In Complex With
Hla-Dq1 And Mbp 85-99
Length = 206
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 36 DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71
DQR + + ++LHI Q D+ VY C S+
Sbjct: 58 DQRIAVTLNKTAKHFSLHITETQPEDSAVYFCAASS 93
>pdb|1JGV|L Chain L, Structural Basis For Disfavored Elimination Reaction In
Catalytic Antibody 1d4
pdb|1JGU|L Chain L, Structural Basis For Disfavored Elimination Reaction In
Catalytic Antibody 1d4
Length = 220
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLST 71
Y RFS + R G ++TL I + D GVY C ST
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQST 97
>pdb|2HKF|L Chain L, Crystal Structure Of The Complex Fab M75- Peptide
pdb|2HKH|L Chain L, Crystal Structure Of The Fab M75
Length = 219
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLST 71
Y RFS + R G ++TL I + D GVY C ST
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQST 97
>pdb|1BLN|A Chain A, Anti-P-Glycoprotein Fab Mrk-16
pdb|1BLN|C Chain C, Anti-P-Glycoprotein Fab Mrk-16
Length = 214
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLSTQPVRSF 77
Y RFS + R G ++TL I + D GVY C ++ R+F
Sbjct: 54 YKISNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQASHAPRTF 103
>pdb|3UTZ|A Chain A, Endogenous-Like Inhibitory Antibodies Targeting Activated
Metalloproteinase Motifs Show Therapeutic Potential
pdb|3UTZ|D Chain D, Endogenous-Like Inhibitory Antibodies Targeting Activated
Metalloproteinase Motifs Show Therapeutic Potential
pdb|3UTZ|E Chain E, Endogenous-Like Inhibitory Antibodies Targeting Activated
Metalloproteinase Motifs Show Therapeutic Potential
Length = 219
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 21/167 (12%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF------VNL 81
Y RFS + R G ++TL I + D GVY C ++ +F +
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQASHVPPTFGSGTKLEIKR 113
Query: 82 NVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVI 141
V P+ I D + G T ++ C + A + W + + S +S +
Sbjct: 114 TVAAPSVFIFPPSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES----V 168
Query: 142 TEKGEVTTSY-----LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
TE+ ++Y L + +A+ + Y+C ++ ++S N
Sbjct: 169 TEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 215
>pdb|1CBV|L Chain L, An Autoantibody To Single-Stranded Dna: Comparison Of
The Three-Dimensional Structures Of The Unliganded Fab
And A Deoxynucleotide-Fab Complex
pdb|1NBV|L Chain L, An Autoantibody To Single-Stranded Dna: Comparison Of
The Three-Dimensional Structures Of The Unliganded Fab
And A Deoxynucleotide-Fab Complex
Length = 219
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLST 71
Y RFS + R G ++TL I + D GVY C ST
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQST 97
>pdb|3QCT|L Chain L, Crystal Structure Of The Humanized Apo Lt3015
Anti-Lysophosphatidic Acid Antibody Fab Fragment
pdb|3QCU|L Chain L, Crystal Structure Of The Lt3015 Antibody Fab Fragment In
Complex With Lysophosphatidic Acid (14:0)
pdb|3QCU|M Chain M, Crystal Structure Of The Lt3015 Antibody Fab Fragment In
Complex With Lysophosphatidic Acid (14:0)
pdb|3QCV|L Chain L, Crystal Structure Of The Lt3015 Antibody Fab Fragment In
Complex With Lysophosphatidic Acid (18:2)
pdb|3QCV|M Chain M, Crystal Structure Of The Lt3015 Antibody Fab Fragment In
Complex With Lysophosphatidic Acid (18:2)
Length = 218
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 21/167 (12%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF------VNL 81
Y FS + R G ++TL I + D GVY C ST +F +
Sbjct: 54 YKVSNLFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYFCSQSTHFPFTFGQGTKLEIKR 113
Query: 82 NVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVI 141
V P+ I D + G T ++ C + A + W + + S +S +
Sbjct: 114 TVAAPSVFIFPPSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES----V 168
Query: 142 TEKGEVTTSY-----LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
TE+ ++Y L + +A+ + Y+C ++ ++S N
Sbjct: 169 TEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 215
>pdb|1RMF|L Chain L, Structures Of A Monoclonal Anti-Icam-1 Antibody R6.5
Fragment At 2.8 Angstroms Resolution
Length = 219
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLST 71
Y RFS + R G ++TL I + D GVY C ST
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQST 97
>pdb|3UO1|L Chain L, Structure Of A Monoclonal Antibody Complexed With Its
Mhc-I Antigen
pdb|3UYR|L Chain L, Structure Of A Monoclonal Antibody Complexed With Its
Mhc-I Antigen
pdb|3V4U|L Chain L, Structure Of A Monoclonal Antibody Complexed With Its
Mhc-I Antigen
pdb|3V52|L Chain L, Structure Of A Monoclonal Antibody Complexed With Its
Mhc-I Antigen
Length = 218
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLST 71
Y RFS + R G ++TL I + D GVY C ST
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQST 97
>pdb|3IF1|A Chain A, Crystal Structure Of 237mab In Complex With A Galnac
pdb|3IF1|C Chain C, Crystal Structure Of 237mab In Complex With A Galnac
Length = 215
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLST 71
Y RFS + R G ++TL I + D GVY C ST
Sbjct: 53 YKVSNRFSGVPDRFSGSGSGTDFTLKISSVEAEDLGVYFCSQST 96
>pdb|3IET|A Chain A, Crystal Structure Of 237mab With Antigen
pdb|3IET|C Chain C, Crystal Structure Of 237mab With Antigen
Length = 217
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLST 71
Y RFS + R G ++TL I + D GVY C ST
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFTLKISSVEAEDLGVYFCSQST 97
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISY---DSSRGGVSVITEKGEVTTSYLLIQQ 156
E + L C + P P I W + ++ D S G I KG+ +S L I+
Sbjct: 108 ENGQVTLVCDAEGEPIPE--ITWKRAVDGFTFTEGDKSLDGR--IEVKGQHGSSSLHIKD 163
Query: 157 AELKDSGKYSC 167
+L DSG+Y C
Sbjct: 164 VKLSDSGRYDC 174
>pdb|4AJ0|A Chain A, Crystallographic Structure Of An Amyloidogenic Variant,
3rcw, Of The Germinal Line Lambda 3
pdb|4AJ0|B Chain B, Crystallographic Structure Of An Amyloidogenic Variant,
3rcw, Of The Germinal Line Lambda 3
pdb|4AJ0|C Chain C, Crystallographic Structure Of An Amyloidogenic Variant,
3rcw, Of The Germinal Line Lambda 3
pdb|4AJ0|D Chain D, Crystallographic Structure Of An Amyloidogenic Variant,
3rcw, Of The Germinal Line Lambda 3
Length = 107
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 14/100 (14%)
Query: 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE------VISYDSSRGGVSVIT 142
E+ P + V G T ++TCS + Y +WY VI DS R S I
Sbjct: 3 ELTQPPSVSVSPGQTASITCSGDKLGD--KYAYWYQQKPGQSPVLVIYQDSKR--PSGIP 58
Query: 143 EK----GEVTTSYLLIQQAELKDSGKYSCSPSNADVASVY 178
E+ T+ L I + D Y C +++ A V+
Sbjct: 59 ERFSGSNSGNTATLTISGTQAMDEADYYCQAADSSTAVVF 98
>pdb|1T66|L Chain L, The Structure Of Fab With Intermediate Affinity For
Fluorescein.
pdb|1T66|C Chain C, The Structure Of Fab With Intermediate Affinity For
Fluorescein
Length = 219
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLST 71
Y RFS + R G ++TL I + D GVY C ST
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQST 97
>pdb|3FO0|L Chain L, Crystal Structure Of Hapten Complex Of Catalytic
Elimination Antibody 13g5 (Wild-Type)
Length = 219
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 21/167 (12%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF------VNL 81
Y RFS + R G ++TL I + D GVY C + +F +
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFTLKINRVEAEDLGVYYCFQGSHLPPTFGGGTKLEIKR 113
Query: 82 NVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVI 141
V P+ I D + G T ++ C + A + W + + S +S +
Sbjct: 114 TVAAPSVFIFPPSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES----V 168
Query: 142 TEKGEVTTSY-----LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
TE+ ++Y L + +A+ + Y+C ++ ++S N
Sbjct: 169 TEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 215
>pdb|3FO1|L Chain L, Crystal Structure Of Hapten Complex Of Catalytic
Elimination Antibody 13g5 (Glu(L39)ala Mutant)
pdb|3FO1|A Chain A, Crystal Structure Of Hapten Complex Of Catalytic
Elimination Antibody 13g5 (Glu(L39)ala Mutant)
Length = 219
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 21/167 (12%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF------VNL 81
Y RFS + R G ++TL I + D GVY C + +F +
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFTLKINRVEAEDLGVYYCFQGSHLPPTFGGGTKLEIKR 113
Query: 82 NVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVI 141
V P+ I D + G T ++ C + A + W + + S +S +
Sbjct: 114 TVAAPSVFIFPPSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES----V 168
Query: 142 TEKGEVTTSY-----LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
TE+ ++Y L + +A+ + Y+C ++ ++S N
Sbjct: 169 TEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 215
>pdb|1FLR|L Chain L, 4-4-20 Fab Fragment
Length = 219
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLST 71
Y RFS + R G ++TL I + D GVY C ST
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQST 97
>pdb|3FO2|L Chain L, Crystal Structure Of Hapten Complex Of Catalytic
Elimination Antibody 13g5 (Glu(L39)gln Mutant)
pdb|3FO2|A Chain A, Crystal Structure Of Hapten Complex Of Catalytic
Elimination Antibody 13g5 (Glu(L39)gln Mutant)
Length = 219
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 21/167 (12%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF------VNL 81
Y RFS + R G ++TL I + D GVY C + +F +
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFTLKINRVEAEDLGVYYCFQGSHLPPTFGGGTKLEIKR 113
Query: 82 NVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVI 141
V P+ I D + G T ++ C + A + W + + S +S +
Sbjct: 114 TVAAPSVFIFPPSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES----V 168
Query: 142 TEKGEVTTSY-----LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
TE+ ++Y L + +A+ + Y+C ++ ++S N
Sbjct: 169 TEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 215
>pdb|3TF7|C Chain C, 42f3 Ql9H2-Ld Complex
pdb|3TF7|G Chain G, 42f3 Ql9H2-Ld Complex
pdb|3TF7|I Chain I, 42f3 Ql9H2-Ld Complex
pdb|3TF7|K Chain K, 42f3 Ql9H2-Ld Complex
Length = 256
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 88 AEILGSPDLHV--DEGSTINLTCSIKYSPEPPAYIFWY 123
A+ + PD V EG+++ L C KYS Y+FWY
Sbjct: 3 AQSVTQPDARVTVSEGASLQLRC--KYSYSATPYLFWY 38
>pdb|3IFO|L Chain L, X-Ray Structure Of Amyloid Beta Peptide:antibody
(Abeta1- 7:10d5) Complex
pdb|3IFO|B Chain B, X-Ray Structure Of Amyloid Beta Peptide:antibody
(Abeta1- 7:10d5) Complex
Length = 219
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYEC 67
Y RFS + R G ++TL IK + D G+Y C
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFTLKIKKVEAEDLGIYYC 93
>pdb|4FAB|L Chain L, Three-Dimensional Structure Of A Fluorescein-Fab Complex
Crystallized In 2-Methyl-2,4-Pentanediol
Length = 219
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLST 71
Y RFS + R G ++TL I + D GVY C ST
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQST 97
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQA 157
++ G T+ +TC +P P I+W + + + R + +L I+ +
Sbjct: 122 IEVGHTVLMTCKAIGNPTP--NIYWIKNQTKVDMSNPRY---------SLKDGFLQIENS 170
Query: 158 ELKDSGKYSCSPSNA 172
+D GKY C N+
Sbjct: 171 REEDQGKYECVAENS 185
>pdb|2E7B|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Kiaa1556
Length = 103
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
DL V EG L C + P + W + + V+ G + ++G + L++
Sbjct: 17 DLEVLEGGAATLRCVLSSVAAP---VKWCYGNNVLRP----GDKYSLRQEGAMLE--LVV 67
Query: 155 QQAELKDSGKYSCS 168
+ +DSG+YSCS
Sbjct: 68 RNLRPQDSGRYSCS 81
>pdb|1CLY|L Chain L, Igg Fab (Human Igg1, Kappa) Chimeric Fragment (Cbr96)
Complexed With Lewis Y Nonoate Methyl Ester
pdb|1UCB|L Chain L, Structure Of Uncomplexed Fab Compared To Complex (1cly,
1clz)
Length = 219
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 21/167 (12%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYEC-QLSTQPV-----RSFFVNL 81
Y RFS + R G ++TL I + D GVY C Q S P +
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPFTFGSGTKLEIKR 113
Query: 82 NVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVI 141
V P+ I D + G T ++ C + A + W + + S +S +
Sbjct: 114 TVAAPSVFIFPPSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES----V 168
Query: 142 TEKGEVTTSY-----LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
TE+ ++Y L + +A+ + Y+C ++ ++S N
Sbjct: 169 TEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 215
>pdb|4DTG|L Chain L, Hemostatic Effect Of A Monoclonal Antibody Mab 2021
Blocking The Interaction Between Fxa And Tfpi In A
Rabbit Hemophilia Model
Length = 219
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 63/157 (40%), Gaps = 18/157 (11%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF------VNLNVVVPTAEIL 91
RFS G ++TL I + D GVY C +T ++F + V P+ I
Sbjct: 66 RFSG--SGSGTDFTLKISRVEAEDVGVYYCLQATHFPQTFGGGTKVEIKRTVAAPSVFIF 123
Query: 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY 151
D + G T ++ C + A + W + + S +S +TE+ ++Y
Sbjct: 124 PPSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES----VTEQDSKDSTY 178
Query: 152 -----LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
L + +A+ + Y+C ++ ++S N
Sbjct: 179 SLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 215
>pdb|2I26|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I26|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I26|P Chain P, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I27|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain
pdb|2I27|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain
Length = 121
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSS--RGGVSVITEKGEVTTSYLLIQQAE 158
G ++ + C ++ S + +WY + + S +GG V T + L I
Sbjct: 15 GESLTINCVLRDSNCALSSTYWYRKKSGSTNEESISKGGRYVETVNSGSKSFSLRINDLT 74
Query: 159 LKDSGKYSCSP-SNADVASVYVHVLNGEYTG 188
++DSG Y C P S LN +Y G
Sbjct: 75 VEDSGTYRCKPESRYGSYDAECAALNDQYGG 105
>pdb|3SO5|A Chain A, Crystal Structure Of An Immunoglobulin I-Set Domain Of
Lrig3 Protein (Lrig3) From Mus Musculus At 1.70 A
Resolution
pdb|3SO5|B Chain B, Crystal Structure Of An Immunoglobulin I-Set Domain Of
Lrig3 Protein (Lrig3) From Mus Musculus At 1.70 A
Resolution
Length = 112
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT--TSYLLIQQAE 158
GS ++ TCS S + P W +E + + + GE+ T+ L ++ E
Sbjct: 25 GSDVSFTCSAASSSDSPXTFAWXXDNEALQDAEXENYAHLRAQGGELXEYTTILRLRNVE 84
Query: 159 LKDSGKYSCSPSN 171
G Y C SN
Sbjct: 85 FTSEGXYQCVISN 97
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
DL V EG + C + P P + W + + DS+ ++ E G L+I
Sbjct: 18 DLTVQEGKLCRMDCKVSGLPTP--DLSWQLDGKPVRPDSAH--KMLVRENG---VHSLII 70
Query: 155 QQAELKDSGKYSCSPSN 171
+ +D+G Y+C +N
Sbjct: 71 EPVTSRDAGIYTCIATN 87
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQA 157
++ G T+ +TC +P P I+W + + + R + +L I+ +
Sbjct: 124 IEVGHTVLMTCKAIGNPTP--NIYWIKNQTKVDMSNPRY---------SLKDGFLQIENS 172
Query: 158 ELKDSGKYSCSPSNA 172
+D GKY C N+
Sbjct: 173 REEDQGKYECVAENS 187
>pdb|2UYL|A Chain A, Crystal Structure Of A Monoclonal Antibody Directed
Against An Antigenic Determinant Common To Ogawa And
Inaba Serotypes Of Vibrio Cholerae O1
pdb|2UYL|M Chain M, Crystal Structure Of A Monoclonal Antibody Directed
Against An Antigenic Determinant Common To Ogawa And
Inaba Serotypes Of Vibrio Cholerae O1
pdb|2UYL|V Chain V, Crystal Structure Of A Monoclonal Antibody Directed
Against An Antigenic Determinant Common To Ogawa And
Inaba Serotypes Of Vibrio Cholerae O1
pdb|2UYL|X Chain X, Crystal Structure Of A Monoclonal Antibody Directed
Against An Antigenic Determinant Common To Ogawa And
Inaba Serotypes Of Vibrio Cholerae O1
Length = 219
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLSTQPVRSF 77
Y RFS + R G ++TL I + D GVY C + R+F
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFTLEISRVEAEDLGVYYCFQGSHVPRTF 103
>pdb|3TPU|A Chain A, 42f3 P5e8H2-Ld Complex
pdb|3TPU|C Chain C, 42f3 P5e8H2-Ld Complex
pdb|3TPU|G Chain G, 42f3 P5e8H2-Ld Complex
pdb|3TPU|M Chain M, 42f3 P5e8H2-Ld Complex
Length = 211
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 88 AEILGSPD--LHVDEGSTINLTCSIKYSPEPPAYIFWY 123
A+ + PD + V EG+++ L C KYS Y+FWY
Sbjct: 4 AQSVTQPDARVTVSEGASLQLRC--KYSYSATPYLFWY 39
>pdb|3TFK|C Chain C, 42f3-P4b10H2-Ld
Length = 212
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 88 AEILGSPD--LHVDEGSTINLTCSIKYSPEPPAYIFWY 123
A+ + PD + V EG+++ L C KYS Y+FWY
Sbjct: 5 AQSVTQPDARVTVSEGASLQLRC--KYSYSATPYLFWY 40
>pdb|1KEM|L Chain L, Catalytic Antibody 28b4 Fab Fragment
pdb|1KEL|L Chain L, Catalytic Antibody 28b4 Fab Fragment Complexed With Hapten
(1-[n-4'-Nitrobenzyl-N-4'-Carboxybutylamino]
Methylphosphonic Acid)
Length = 217
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLSTQPVRSF 77
Y RFS + R G ++TL I + D GVY C + R+F
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPRTF 103
>pdb|2ESV|E Chain E, Structure Of The Hla-E-VmaprtlilKK50.4 TCR COMPLEX
Length = 240
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 141 ITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
+ E+ T S L +Q AEL+DSG Y C+ S
Sbjct: 64 LAERTGGTYSTLKVQPAELEDSGVYFCASSQ 94
>pdb|1G9M|L Chain L, Hiv-1 Hxbc2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1G9N|L Chain L, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
Length = 214
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 16/149 (10%)
Query: 47 GDEWTLHIKWAQKRDAGVYEC-QLSTQPVRSFF-------VNLNVVVPTAEILGSPDLHV 98
G E+TL I Q D VY C Q + P R F + V P+ I D +
Sbjct: 68 GAEFTLTISSLQSEDFAVYYCQQYNNWPPRYTFGQGTRLEIKRTVAAPSVFIFPPSDEQL 127
Query: 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTT----SYLLI 154
G T ++ C + A + W + + S +S SV +K + +T S L +
Sbjct: 128 KSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQE---SVTEQKSKDSTYSLSSTLTL 183
Query: 155 QQAELKDSGKYSCSPSNADVASVYVHVLN 183
+A+ + Y+C ++ ++S N
Sbjct: 184 SKADYEKHKVYACEVTHQGLSSPVTKSFN 212
>pdb|1TZG|L Chain L, Crystal Structure Of Hiv-1 Neutralizing Human Fab 4e10 In
Complex With A 13-residue Peptide Containing The 4e10
Epitope On Gp41
pdb|1TZG|M Chain M, Crystal Structure Of Hiv-1 Neutralizing Human Fab 4e10 In
Complex With A 13-residue Peptide Containing The 4e10
Epitope On Gp41
pdb|2FX7|L Chain L, Crystal Structure Of Hiv-1 Neutralizing Human Fab 4e10 In
Complex With A 16-Residue Peptide Encompassing The 4e10
Epitope On Gp41
pdb|2FX8|L Chain L, Crystal Structure Of Hiv-1 Neutralizing Human Fab 4e10 In
Complex With An Aib-Induced Peptide Encompassing The
4e10 Epitope On Gp41
pdb|2FX8|M Chain M, Crystal Structure Of Hiv-1 Neutralizing Human Fab 4e10 In
Complex With An Aib-Induced Peptide Encompassing The
4e10 Epitope On Gp41
pdb|2FX8|N Chain N, Crystal Structure Of Hiv-1 Neutralizing Human Fab 4e10 In
Complex With An Aib-Induced Peptide Encompassing The
4e10 Epitope On Gp41
pdb|2FX8|O Chain O, Crystal Structure Of Hiv-1 Neutralizing Human Fab 4e10 In
Complex With An Aib-Induced Peptide Encompassing The
4e10 Epitope On Gp41
pdb|2FX9|L Chain L, Crystal Structure Of Hiv-1 Neutralizing Human Fab 4e10 In
Complex With A Thioether-Linked Peptide Encompassing The
4e10 Epitope On Gp41
pdb|2FX9|M Chain M, Crystal Structure Of Hiv-1 Neutralizing Human Fab 4e10 In
Complex With A Thioether-Linked Peptide Encompassing The
4e10 Epitope On Gp41
Length = 214
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 72/186 (38%), Gaps = 23/186 (12%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQ 68
+++W + R + Y + R S + R G ++TL I + D VY CQ
Sbjct: 33 KLAWYQQRPGQAPRL--LIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQ 90
Query: 69 LSTQPVRSFF------VNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFW 122
Q + +F V V P+ I D + G T ++ C + A + W
Sbjct: 91 QYGQSLSTFGQGTKVEVKRTVAAPSVFIFPPSDEQLKSG-TASVVCLLNNFYPREAKVQW 149
Query: 123 YHHDEVISYDSSRGGVSVITEKGEVTTSY-----LLIQQAELKDSGKYSCSPSNADVASV 177
+ + S +S +TE+ ++Y L + +A+ + Y+C ++ ++S
Sbjct: 150 KVDNALQSGNSQES----VTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP 205
Query: 178 YVHVLN 183
N
Sbjct: 206 VTKSFN 211
>pdb|4GJT|B Chain B, Complex Structure Of Nectin-4 Bound To Mv-H
pdb|4GJT|C Chain C, Complex Structure Of Nectin-4 Bound To Mv-H
Length = 123
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 49 EWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVV 85
+ ++ ++ A + D G YEC++ST P SF L + V
Sbjct: 79 DGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRV 115
>pdb|3TJH|C Chain C, 42f3-P3a1H2-Ld Complex
Length = 226
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 88 AEILGSPD--LHVDEGSTINLTCSIKYSPEPPAYIFWY 123
A+ + PD + V EG+++ L C KYS Y+FWY
Sbjct: 9 AQSVTQPDARVTVSEGASLQLRC--KYSYSATPYLFWY 44
>pdb|3RJD|A Chain A, Crystal Structure Of Fc Ri And Its Implication To High
Affinity Immunoglobulin G Binding
Length = 262
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 17/102 (16%)
Query: 78 FVNLNVVVPTAEILGSPDLHVD------EGSTINLTCSIKYSPEPPAYIFWYHHDEVISY 131
+ + + V E+ +P L+ EG+ + L+C K + P ++ Y
Sbjct: 156 YTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSF-----Y 210
Query: 132 DSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173
S+ T +G T+S I A +DSG Y C + D
Sbjct: 211 MGSK------TLRGRNTSSEYQILTARREDSGLYWCEAATED 246
>pdb|1DEE|A Chain A, Crystal Structure At 2.7a Resolution Of A Complex Between
A Staphylococcus Aureus Domain And A Fab Fragment Of A
Human Igm Antibody
pdb|1DEE|C Chain C, Crystal Structure At 2.7a Resolution Of A Complex Between
A Staphylococcus Aureus Domain And A Fab Fragment Of A
Human Igm Antibody
pdb|1DEE|E Chain E, Crystal Structure At 2.7a Resolution Of A Complex Between
A Staphylococcus Aureus Domain And A Fab Fragment Of A
Human Igm Antibody
Length = 214
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 61/157 (38%), Gaps = 18/157 (11%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF------VNLNVVVPTAEIL 91
RFS G ++TL I Q D Y CQ S R+F + V P+ I
Sbjct: 61 RFSG--SGSGTDFTLTISSLQPEDFATYYCQQSYSAPRTFGQGTKVEIKRTVAAPSVFIF 118
Query: 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY 151
D + G T ++ C + A + W + + S +S +TE+ ++Y
Sbjct: 119 PPSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES----VTEQDSKDSTY 173
Query: 152 -----LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
L + +A+ + Y+C ++ ++S N
Sbjct: 174 SLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 210
>pdb|2EH8|L Chain L, Crystal Structure Of The Complex Of Humanized Kr127 Fab
And Pres1 Peptide Epitope
Length = 218
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 18/157 (11%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF------VNLNVVVPTAEIL 91
RFS G ++TL I + D GVY C T ++F + V P+ I
Sbjct: 66 RFSG--SGSGTDFTLKISRVEAEDVGVYYCVQGTHFPQTFGGGTKVEIKRTVAAPSVFIF 123
Query: 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY 151
D + G T ++ C + A + W + + S +S +TE+ ++Y
Sbjct: 124 PPSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES----VTEQDSKDSTY 178
Query: 152 -----LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
L + +A+ + Y+C ++ ++S N
Sbjct: 179 SLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 215
>pdb|4GKZ|A Chain A, Ha1.7, A Mhc Class Ii Restricted Tcr Specific For
Haemagglutinin
Length = 202
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 14/93 (15%)
Query: 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH------DEVISYDSSRGGVSVITE- 143
LGS + V EG+ + L C+ YS P Y+FWY ++ Y S+ V I
Sbjct: 7 LGS-HVSVSEGALVLLRCN--YSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGF 63
Query: 144 ----KGEVTTSYLLIQQAELKDSGKYSCSPSNA 172
K T+ +L A + D+ +Y C+ S +
Sbjct: 64 EAEFKKSETSFHLTKPSAHMSDAAEYFCAVSES 96
>pdb|2EH7|L Chain L, Crystal Structure Of Humanized Kr127 Fab
Length = 219
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 18/157 (11%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF------VNLNVVVPTAEIL 91
RFS G ++TL I + D GVY C T ++F + V P+ I
Sbjct: 66 RFSG--SGSGTDFTLKISRVEAEDVGVYYCVQGTHFPQTFGGGTKVEIKRTVAAPSVFIF 123
Query: 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY 151
D + G T ++ C + A + W + + S +S +TE+ ++Y
Sbjct: 124 PPSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES----VTEQDSKDSTY 178
Query: 152 -----LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
L + +A+ + Y+C ++ ++S N
Sbjct: 179 SLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 215
>pdb|3MBE|C Chain C, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
pdb|3MBE|G Chain G, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
Length = 229
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 10/36 (27%)
Query: 32 TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67
T+ S +R+S TLHIK AQ D+G Y C
Sbjct: 62 TFNSKERYS----------TLHIKDAQLEDSGTYFC 87
>pdb|2V5Y|A Chain A, Crystal Structure Of The Receptor Protein Tyrosine
Phosphatase Mu Ectodomain
Length = 731
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 17 WIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72
W++ D+ + TS +RF A + ++ KRDAG Y C + T+
Sbjct: 199 WLQGIDVRDAPLKEIKVTSSRRFIA---------SFNVVNTTKRDAGKYRCMIRTE 245
>pdb|2ICW|I Chain I, Crystal Structure Of A Complete Ternary Complex Between
Tcr, Superantigen, And Peptide-Mhc Class Ii Molecule
pdb|2ICW|K Chain K, Crystal Structure Of A Complete Ternary Complex Between
Tcr, Superantigen, And Peptide-Mhc Class Ii Molecule
Length = 110
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 94 PD--LHVDEGSTINLTCSIKYSPEPPAYIFWY 123
PD + V EG+++ L C KYS Y+FWY
Sbjct: 6 PDARVTVSEGASLQLRC--KYSYSATPYLFWY 35
>pdb|1P2C|A Chain A, Crystal Structure Analysis Of An Anti-Lysozyme Antibody
pdb|1P2C|D Chain D, Crystal Structure Analysis Of An Anti-Lysozyme Antibody
pdb|2Q76|A Chain A, Mouse Anti-Hen Egg White Lysozyme Antibody F10.6.6 Fab
Fragment
pdb|2Q76|C Chain C, Mouse Anti-Hen Egg White Lysozyme Antibody F10.6.6 Fab
Fragment
Length = 212
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLSTQPVRSF 77
YTS Q S I R G ++TL I + D GVY CQ S R+F
Sbjct: 50 YTS-QSMSGIPSRFSGSGSGTDFTLSINSVETEDFGVYFCQQSGSWPRTF 98
>pdb|1HEZ|A Chain A, Antibody-Antigen Complex
pdb|1HEZ|C Chain C, Antibody-Antigen Complex
Length = 214
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 61/157 (38%), Gaps = 18/157 (11%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF------VNLNVVVPTAEIL 91
RFS G ++TL I Q D Y CQ S R+F + V P+ I
Sbjct: 61 RFSG--SGSGTDFTLTISSLQPEDFATYYCQQSYSTPRTFGQGTKVEIKRTVAAPSVFIF 118
Query: 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY 151
D + G T ++ C + A + W + + S +S +TE+ ++Y
Sbjct: 119 PPSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES----VTEQDSKDSTY 173
Query: 152 -----LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
L + +A+ + Y+C ++ ++S N
Sbjct: 174 SLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 210
>pdb|3M8O|L Chain L, Human Iga1 Fab Fragment
pdb|3QNX|A Chain A, Orthorhombic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
pdb|3QNY|A Chain A, Monoclinic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
pdb|3QNY|C Chain C, Monoclinic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
pdb|3QNZ|A Chain A, Orthorhombic Form Of Igg1 Fab Fragment (in Complex With
Antigenic Tubulin Peptide) Sharing Same Fv As Iga
pdb|3QO0|A Chain A, Monoclinic Form Of Igg1 Fab Fragment (In Complex With
Antigenic Peptide) Sharing Same Fv As Iga
pdb|3QO1|A Chain A, Monoclinic Form Of Igg1 Fab Fragment (apo Form) Sharing
Same Fv As Iga
Length = 219
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 18/157 (11%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF------VNLNVVVPTAEIL 91
RFS G ++TL I + DAG Y C + Q +F + V P+ I
Sbjct: 66 RFSG--SGSGTDFTLKIIRVEAEDAGTYYCMQNKQTPLTFGQGTRLEIKRTVAAPSVFIF 123
Query: 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY 151
D + G T ++ C + A + W + + S +S +TE+ ++Y
Sbjct: 124 PPSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES----VTEQDSKDSTY 178
Query: 152 -----LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
L + +A+ + Y+C ++ ++S N
Sbjct: 179 SLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 215
>pdb|2FCB|A Chain A, Human Fc Gamma Receptor Iib Ectodomain (Cd32)
Length = 173
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 21/114 (18%)
Query: 57 AQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAE--ILGSPDLHVDEGSTINLTCSIKYSP 114
A D+G Y CQ + Q S V+L V+ +E +L +P L EG TI L C +
Sbjct: 58 ANNNDSGEYTCQ-TGQTSLSDPVHLTVL---SEWLVLQTPHLEFQEGETIVLRCH-SWKD 112
Query: 115 EPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168
+P + ++ + + + S S I QA SG Y C+
Sbjct: 113 KPLVKVTFFQNGKSKKFSRSDPNFS--------------IPQANHSHSGDYHCT 152
>pdb|3RY4|A Chain A, 1.5 Angstrom Resolution Structure Of Glycosylated
Fcgammariia (Low- Responder Polymorphism)
Length = 170
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 57 AQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTC 108
A D+G Y CQ + Q S V+L V+ +L +P L EG TI L C
Sbjct: 58 ANNNDSGEYTCQ-TGQTSLSDPVHLTVLF-EWLVLQTPHLEFQEGETIMLRC 107
>pdb|1I9E|A Chain A, Tcr Domain
Length = 115
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 94 PD--LHVDEGSTINLTCSIKYSPEPPAYIFWY 123
PD + V EG+++ L C KYS Y+FWY
Sbjct: 6 PDARVTVSEGASLQLRC--KYSYSATPYLFWY 35
>pdb|2ZG2|A Chain A, Crystal Structure Of Two N-Terminal Domains Of Native
Siglec-5
Length = 216
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 98 VDEGSTINLTCSIKYS-----PEPPAYIFWYHHDEVISY 131
V EG + + CS Y PP Y++W+ E+ Y
Sbjct: 13 VQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYY 51
>pdb|2ZG1|A Chain A, Crystal Structure Of Two N-Terminal Domains Of Siglec-5 In
Complex With 6'-Sialyllactose
pdb|2ZG3|A Chain A, Crystal Structure Of Two N-terminal Domains Of Native
Siglec-5 In Complex With 3'-sialyllactose
Length = 214
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 98 VDEGSTINLTCSIKYS-----PEPPAYIFWYHHDEVISY 131
V EG + + CS Y PP Y++W+ E+ Y
Sbjct: 12 VQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYY 50
>pdb|1LMK|A Chain A, The Structure Of A Bivalent Diabody
pdb|1LMK|C Chain C, The Structure Of A Bivalent Diabody
pdb|1LMK|E Chain E, The Structure Of A Bivalent Diabody
pdb|1LMK|G Chain G, The Structure Of A Bivalent Diabody
Length = 238
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLST 71
Y RFS + R G ++TL I + D GVY C ST
Sbjct: 180 YKVSTRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQST 223
>pdb|2H1P|L Chain L, The Three-Dimensional Structures Of A Polysaccharide
Binding Antibody To Cryptococcus Neoformans And Its
Complex With A Peptide From A Phage Display Library:
Implications For The Identification Of Peptide
Mimotopes
Length = 219
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLST 71
Y RFS + + G ++TL I + D GVY C ST
Sbjct: 54 YKVSNRFSGVPDKFSGSGSGTDFTLKISRVEAEDQGVYFCSQST 97
>pdb|2VXV|L Chain L, Crystal Structure Of Human Igg Abt-325 Fab Fragment
Length = 214
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 67/170 (39%), Gaps = 22/170 (12%)
Query: 31 YTYTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYEC-QLSTQPVRSFF------ 78
+ YT+ R + I R G E+TL I Q D VY C Q + P +F
Sbjct: 47 FIYTASTRATDIPARFSGSGSGTEFTLTISSLQSEDFAVYYCQQYNNWPSITFGQGTRLE 106
Query: 79 VNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGV 138
+ V P+ I D + G T ++ C + A + W + + S +S
Sbjct: 107 IKRTVAAPSVFIFPPSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES-- 163
Query: 139 SVITEKGEVTTSY-----LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
+TE+ ++Y L + +A+ + Y+C ++ ++S N
Sbjct: 164 --VTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 211
>pdb|8FAB|A Chain A, Crystal Structure Of The Fab Fragment From The Human
Myeloma Immunoglobulin Igg Hil At 1.8 Angstroms
Resolution
pdb|8FAB|C Chain C, Crystal Structure Of The Fab Fragment From The Human
Myeloma Immunoglobulin Igg Hil At 1.8 Angstroms
Resolution
Length = 212
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH 125
E+ P + V G T +TCS P Y +WY
Sbjct: 3 ELTQPPSVSVSPGQTARITCSANALPN--QYAYWYQQ 37
>pdb|3QEH|B Chain B, Crystal Structure Of Human N12-I15, An Adcc And
Non-Neutralizing Anti- Hiv-1 Env Antibody
pdb|3QEH|D Chain D, Crystal Structure Of Human N12-I15, An Adcc And
Non-Neutralizing Anti- Hiv-1 Env Antibody
pdb|3QEH|F Chain F, Crystal Structure Of Human N12-I15, An Adcc And
Non-Neutralizing Anti- Hiv-1 Env Antibody
pdb|3QEH|H Chain H, Crystal Structure Of Human N12-I15, An Adcc And
Non-Neutralizing Anti- Hiv-1 Env Antibody
Length = 218
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 17/156 (10%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYEC-QLSTQPV----RSFFVNLNVVVPTAEILG 92
RFS G E+TL I + D GVY C Q P + V P+ I
Sbjct: 66 RFSG--SGSGTEFTLKISRVEAEDVGVYYCMQAKESPTFGQGTKVEIKRTVAAPSVFIFP 123
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY- 151
D + G T ++ C + A + W + + S +S +TE+ ++Y
Sbjct: 124 PSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES----VTEQDSKDSTYS 178
Query: 152 ----LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
L + +A+ + Y+C ++ ++S N
Sbjct: 179 LSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 214
>pdb|1FCG|A Chain A, Ectodomain Of Human Fc Gamma Receptor, Fcgriia
Length = 174
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 57 AQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTC 108
A D+G Y CQ + Q S V+L V+ +L +P L EG TI L C
Sbjct: 61 ANNNDSGEYTCQ-TGQTSLSDPVHLTVLFEWL-VLQTPHLEFQEGETIMLRC 110
>pdb|3QSK|B Chain B, 5 Histidine Variant Of The Anti-Rnase A Vhh In Complex
With Rnase A
Length = 123
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 17/90 (18%)
Query: 98 VDEGSTINLTCSIKYSPEPPAYIFWYHH------DEVISYDSSRGGV----------SVI 141
V G ++ L+C+ P Y+ W+ + V + DS GG ++
Sbjct: 14 VQAGGSLRLSCAASGYHHPYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTIS 73
Query: 142 TEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
+KG+ T YL + + +D+ Y C+
Sbjct: 74 RDKGK-NTVYLQMDSLKPEDTATYYCAAGG 102
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 23/95 (24%)
Query: 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGG-VSVITEKGEVT 148
I G +++ EG+++++TC PP + H + +RGG +++I+ +G V+
Sbjct: 4 IFGPEEVNSVEGNSVSITCYY-----PPTSVN-RHTRKYWCRQGARGGCITLISSEGYVS 57
Query: 149 TSY----------------LLIQQAELKDSGKYSC 167
+ Y + I Q DSG+Y C
Sbjct: 58 SKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKC 92
>pdb|1MLB|A Chain A, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme
pdb|1MLC|A Chain A, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme Complexed With Lysozyme
pdb|1MLC|C Chain C, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme Complexed With Lysozyme
Length = 214
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 11/93 (11%)
Query: 89 EILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE------VISY--DSSRGGVS 139
E+ SP L V G +++L+C + S + WY +I Y SS G S
Sbjct: 3 ELTQSPATLSVTPGDSVSLSC--RASQSISNNLHWYQQKSHESPRLLIKYVSQSSSGIPS 60
Query: 140 VITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172
+ G T L I E +D G Y C SN+
Sbjct: 61 RFSGSGSGTDFTLSINSVETEDFGMYFCQQSNS 93
>pdb|1IGI|L Chain L, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
pdb|1IGJ|A Chain A, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
pdb|1IGJ|C Chain C, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
Length = 219
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLSTQPVRSF 77
Y RFS + R G ++TL I + D G+Y C +T +F
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYFCSQTTHVPPTF 103
>pdb|1AXT|L Chain L, Immune Versus Natural Selection: Antibody Aldolases With
The Rates Of Natural Enzymes
Length = 216
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLST 71
Y RFS + R G ++TL I + D GVY C T
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQGT 97
>pdb|1NFD|E Chain E, An Alpha-Beta T Cell Receptor (Tcr) Heterodimer In Complex
With An Anti-Tcr Fab Fragment Derived From A Mitogenic
Antibody
pdb|1NFD|G Chain G, An Alpha-Beta T Cell Receptor (Tcr) Heterodimer In Complex
With An Anti-Tcr Fab Fragment Derived From A Mitogenic
Antibody
Length = 212
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE----VISYDSSR--GGVSVIT 142
E++ V G T+ +TCS P+ AY F D+ +I D+ R G +
Sbjct: 2 ELIQPSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFS 61
Query: 143 EKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173
TT+ L I A+ +D Y C S D
Sbjct: 62 GSTSGTTATLTISGAQPEDEAAYYCLSSYGD 92
>pdb|1N26|A Chain A, Crystal Structure Of The Extra-Cellular Domains Of Human
Interleukin-6 Receptor Alpha Chain
Length = 325
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 12/82 (14%)
Query: 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSR-GGVSVITEKGEVTTSYLLIQQAEL 159
G ++ LTC PE A + W SR G+ LL++ +L
Sbjct: 21 GDSVTLTCP-GVEPEDNATVHWVLRKPAAGSHPSRWAGMG----------RRLLLRSVQL 69
Query: 160 KDSGKYSCSPSNADVASVYVHV 181
DSG YSC + +V++ V
Sbjct: 70 HDSGNYSCYRAGRPAGTVHLLV 91
>pdb|3RY6|C Chain C, Complex Of Fcgammariia (Cd32) And The Fc Of Human Igg1
Length = 167
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 57 AQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTC 108
A D+G Y CQ + Q S V+L V+ +L +P L EG TI L C
Sbjct: 55 ANNNDSGEYTCQ-TGQTSLSDPVHLTVLSEWL-VLQTPHLEFQEGETIMLRC 104
>pdb|3FO9|L Chain L, Crystal Structure Of Aldolase Antibody 33f12 Fab' In
Complex With Hapten 1,3-Diketone
pdb|3FO9|A Chain A, Crystal Structure Of Aldolase Antibody 33f12 Fab' In
Complex With Hapten 1,3-Diketone
Length = 219
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLST 71
Y RFS + R G ++TL I + D GVY C T
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQGT 97
>pdb|1MOE|A Chain A, The Three-Dimensional Structure Of An Engineered Scfv
T84.66 Dimer Or Diabody In Vl To Vh Linkage.
pdb|1MOE|B Chain B, The Three-Dimensional Structure Of An Engineered Scfv
T84.66 Dimer Or Diabody In Vl To Vh Linkage
Length = 240
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 25/155 (16%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLH 97
RFS R ++TL I + D Y CQ + + +F + + G ++
Sbjct: 65 RFSGTGSRT--DFTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQ 122
Query: 98 --------VDEGSTINLTCSIKYSPEPPAYIFWYHH------DEVISYDSSRG------- 136
V+ G+++ L+C+ Y+ W + + D + G
Sbjct: 123 LQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPK 182
Query: 137 --GVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169
G + IT T+YL + +D+ Y C+P
Sbjct: 183 FQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAP 217
>pdb|2OI9|B Chain B, Structure Of The 2cLDQL9 ALLOGENEIC COMPLEX
Length = 113
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 94 PD--LHVDEGSTINLTCSIKYSPEPPAYIFWY 123
PD + V EG+++ L C KYS Y+FWY
Sbjct: 6 PDARVTVSEGASLQLRC--KYSYSATPYLFWY 35
>pdb|1FYT|D Chain D, Crystal Structure Of A Complex Of A Human AlphaBETA-T Cell
Receptor, Influenza Ha Antigen Peptide, And Mhc Class Ii
Molecule, Hla-Dr1
pdb|1J8H|D Chain D, Crystal Structure Of A Complex Of A Human AlphaBETA-T Cell
Receptor, Influenza Ha Antigen Peptide, And Mhc Class Ii
Molecule, Hla-Dr4
Length = 212
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 13/88 (14%)
Query: 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHH------DEVISYDSSRGGVSVITE-----K 144
+ V EG+ + L C+ YS P Y+FWY ++ Y S+ V I K
Sbjct: 10 VSVSEGALVLLRCN--YSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFK 67
Query: 145 GEVTTSYLLIQQAELKDSGKYSCSPSNA 172
T+ +L A + D+ +Y C+ S +
Sbjct: 68 KSETSFHLTKPSAHMSDAAEYFCAVSES 95
>pdb|1H5B|A Chain A, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 15 VSWIRHRD----IHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67
V W R I + + S T + + SA TLHI+ AQ D+G Y C
Sbjct: 32 VQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFC 88
>pdb|2E7L|A Chain A, Structure Of A High-Affinity Mutant Of The 2c Tcr In
Complex With LdQL9
pdb|2E7L|B Chain B, Structure Of A High-Affinity Mutant Of The 2c Tcr In
Complex With LdQL9
Length = 113
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 94 PD--LHVDEGSTINLTCSIKYSPEPPAYIFWY 123
PD + V EG+++ L C KYS Y+FWY
Sbjct: 6 PDARVTVSEGASLQLRC--KYSYSATPYLFWY 35
>pdb|3E2H|B Chain B, Structure Of The M67 High-Affinity Mutant Of The 2c Tcr In
Complex With LdQL9
Length = 109
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 94 PD--LHVDEGSTINLTCSIKYSPEPPAYIFWY 123
PD + V EG+++ L C KYS Y+FWY
Sbjct: 5 PDARVTVSEGASLQLRC--KYSYSATPYLFWY 34
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 24/129 (18%)
Query: 51 TLHIKWAQKRDAGVYECQLS------TQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTI 104
+L + +D GVY ++ TQ F V+ V P ++ + V E ++
Sbjct: 72 SLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNT---TVKELDSV 128
Query: 105 NLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT--TSYLLIQQAELKDS 162
LTC S + A I W + + + +TE+ ++ S L I + +D+
Sbjct: 129 TLTC---LSNDIGANIQWLFNSQSLQ----------LTERMTLSQNNSILRIDPIKREDA 175
Query: 163 GKYSCSPSN 171
G+Y C SN
Sbjct: 176 GEYQCEISN 184
>pdb|1FPT|L Chain L, Three-Dimensional Structure Of The Complex Between The
Fab Fragment Of An Neutralizing Antibody For Type 1
Poliovirus And Its Viral Epitope
Length = 219
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLST 71
Y RFS + R G +TL I + D GVY C ST
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTYFTLKISRVEAEDLGVYFCSQST 97
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 24/129 (18%)
Query: 51 TLHIKWAQKRDAGVYECQLS------TQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTI 104
+L + +D GVY ++ TQ F V+ V P ++ + V E ++
Sbjct: 72 SLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNT---TVKELDSV 128
Query: 105 NLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT--TSYLLIQQAELKDS 162
LTC S + A I W + + + +TE+ ++ S L I + +D+
Sbjct: 129 TLTC---LSNDIGANIQWLFNSQSLQ----------LTERMTLSQNNSILRIDPIKREDA 175
Query: 163 GKYSCSPSN 171
G+Y C SN
Sbjct: 176 GEYQCEISN 184
>pdb|3RY5|A Chain A, Three-Dimensional Structure Of Glycosylated Fcgammariia
(High- Responder Polymorphism)
Length = 170
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 57 AQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAE--ILGSPDLHVDEGSTINLTC 108
A D+G Y CQ + Q S V+L V+ +E +L +P L EG TI L C
Sbjct: 58 ANNNDSGEYTCQ-TGQTSLSDPVHLTVL---SEWLVLQTPHLEFQEGETIMLRC 107
>pdb|3D5O|F Chain F, Structural Recognition And Functional Activation Of Fcrr
By Innate Pentraxins
Length = 177
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 57 AQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAE--ILGSPDLHVDEGSTINLTC 108
A D+G Y CQ + Q S V+L V+ +E +L +P L EG TI L C
Sbjct: 58 ANNNDSGEYTCQ-TGQTSLSDPVHLTVL---SEWLVLQTPHLEFQEGETIMLRC 107
>pdb|3PGF|L Chain L, Crystal Structure Of Maltose Bound Mbp With A
Conformationally Specific Synthetic Antigen Binder (Sab)
Length = 215
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 18/157 (11%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF------VNLNVVVPTAEIL 91
RFS R G ++TL I Q D Y CQ S+ +F + V P+ I
Sbjct: 62 RFSG--SRSGTDFTLTISSLQPEDFATYYCQQSSYIPVTFGQGTKVEIKRTVAAPSVFIF 119
Query: 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY 151
D + G T ++ C + A + W + + S +S +TE+ ++Y
Sbjct: 120 PPSDSQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES----VTEQDSKDSTY 174
Query: 152 -----LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
L + +A+ + Y+C ++ ++S N
Sbjct: 175 SLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 211
>pdb|1XED|A Chain A, Crystal Structure Of A Ligand-Binding Domain Of The Human
Polymeric Ig Receptor, Pigr
pdb|1XED|B Chain B, Crystal Structure Of A Ligand-Binding Domain Of The Human
Polymeric Ig Receptor, Pigr
pdb|1XED|C Chain C, Crystal Structure Of A Ligand-Binding Domain Of The Human
Polymeric Ig Receptor, Pigr
pdb|1XED|D Chain D, Crystal Structure Of A Ligand-Binding Domain Of The Human
Polymeric Ig Receptor, Pigr
pdb|1XED|E Chain E, Crystal Structure Of A Ligand-Binding Domain Of The Human
Polymeric Ig Receptor, Pigr
pdb|1XED|F Chain F, Crystal Structure Of A Ligand-Binding Domain Of The Human
Polymeric Ig Receptor, Pigr
Length = 117
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 23/95 (24%)
Query: 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGG-VSVITEKGEVT 148
I G +++ EG+++++TC PP + H + +RGG +++I+ +G V+
Sbjct: 4 IFGPEEVNSVEGNSVSITCYY-----PPTSVN-RHTRKYWCRQGARGGCITLISSEGYVS 57
Query: 149 TSY----------------LLIQQAELKDSGKYSC 167
+ Y + I Q DSG+Y C
Sbjct: 58 SKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKC 92
>pdb|1H9V|A Chain A, Human Fc-Gamma-Receptor Iia (Fcgriia), Monoclinic
Length = 172
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 57 AQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAE--ILGSPDLHVDEGSTINLTC 108
A D+G Y CQ + Q S V+L V+ +E +L +P L EG TI L C
Sbjct: 58 ANNNDSGEYTCQ-TGQTSLSDPVHLTVL---SEWLVLQTPHLEFQEGETIMLRC 107
>pdb|1GC1|L Chain L, Hiv-1 Gp120 Core Complexed With Cd4 And A Neutralizing
Human Antibody
Length = 213
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 18/150 (12%)
Query: 47 GDEWTLHIKWAQKRDAGVYEC-QLSTQPVRSFF-------VNLNVVVPTAEILGSPDLHV 98
G E+TL I Q D VY C Q + P R F + V P+ I D +
Sbjct: 68 GAEFTLTISSLQSEDFAVYYCQQYNNWPPRYTFGQGTRLEIKRTVAAPSVFIFPPSDEQL 127
Query: 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY-----LL 153
G T ++ C + A + W + + S +S +TE+ ++Y L
Sbjct: 128 KSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES----VTEQDSKDSTYSLSSTLT 182
Query: 154 IQQAELKDSGKYSCSPSNADVASVYVHVLN 183
+ +A+ + Y+C ++ ++S N
Sbjct: 183 LSKADYEKHKVYACEVTHQGLSSPVTKSFN 212
>pdb|1LIL|A Chain A, Bence Jones Protein Cle, A Lambda Iii Immunoglobulin
Light- Chain Dimer
pdb|1LIL|B Chain B, Bence Jones Protein Cle, A Lambda Iii Immunoglobulin
Light- Chain Dimer
Length = 212
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 12/96 (12%)
Query: 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-----VISYDSSR---GGVSV 140
E+ P L V G T +TCS + + AY+ WY V+ Y +R G
Sbjct: 2 EVTQPPSLSVSPGQTARITCSGEKLGD--AYVCWYQQRPGQSPVVVIYQDNRRPSGIPER 59
Query: 141 ITEKGEVTTSYLLIQQAELKDSGKYSCS--PSNADV 174
+ T+ L I + D Y C SNA V
Sbjct: 60 FSGSSSGNTATLTISGTQTLDEADYYCQVWDSNASV 95
>pdb|2R8S|L Chain L, High Resolution Structure Of A Specific Synthetic Fab
Bound To P4-P6 Rna Ribozyme Domain
Length = 214
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 18/157 (11%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS-TQPV-----RSFFVNLNVVVPTAEIL 91
RFS R G ++TL I Q D Y CQ S + P+ + V P+ I
Sbjct: 61 RFSG--SRSGTDFTLTISSLQPEDFATYYCQQSYSSPITFGQGTKVEIKRTVAAPSVFIF 118
Query: 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY 151
D + G T ++ C + A + W + + S +S +TE+ ++Y
Sbjct: 119 PPSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES----VTEQDSKDSTY 173
Query: 152 -----LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
L + +A+ + Y+C ++ ++S N
Sbjct: 174 SLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 210
>pdb|1RZ8|A Chain A, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 17b
pdb|1RZ8|C Chain C, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 17b
pdb|1RZJ|L Chain L, Hiv-1 Hxbc2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1RZK|L Chain L, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1YYL|L Chain L, Crystal Structure Of Cd4m33, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|1YYL|Q Chain Q, Crystal Structure Of Cd4m33, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|1YYM|L Chain L, Crystal Structure Of F23, A Scorpion-Toxin Mimic Of Cd4,
In Complex With Hiv-1 Yu2 Gp120 Envelope Glycoprotein
And Anti-Hiv-1 Antibody 17b
pdb|1YYM|Q Chain Q, Crystal Structure Of F23, A Scorpion-Toxin Mimic Of Cd4,
In Complex With Hiv-1 Yu2 Gp120 Envelope Glycoprotein
And Anti-Hiv-1 Antibody 17b
pdb|2I5Y|L Chain L, Crystal Structure Of Cd4m47, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|2I5Y|Q Chain Q, Crystal Structure Of Cd4m47, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|2I60|L Chain L, Crystal Structure Of [phe23]m47, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|2I60|Q Chain Q, Crystal Structure Of [phe23]m47, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|2NXY|C Chain C, Hiv-1 Gp120 Envelope Glycoprotein(S334a) Complexed With
Cd4 And Antibody 17b
pdb|2NXZ|C Chain C, Hiv-1 Gp120 Envelope Glycoprotein (t257s, S334a, S375w)
Complexed With Cd4 And Antibody 17b
pdb|2NY0|C Chain C, Hiv-1 Gp120 Envelope Glycoprotein (M95w, W96c, T257s,
V275c, S334a, S375w, A433m) Complexed With Cd4 And
Antibody 17b
pdb|2NY1|C Chain C, Hiv-1 Gp120 Envelope Glycoprotein (I109c, T257s, S334a,
S375w, Q428c) Complexed With Cd4 And Antibody 17b
pdb|2NY2|C Chain C, Hiv-1 Gp120 Envelope Glycoprotein (T123c, T257s, S334a,
S375w, G431c) Complexed With Cd4 And Antibody 17b
pdb|2NY3|C Chain C, Hiv-1 Gp120 Envelope Glycoprotein (K231c, T257s, E267c,
S334a, S375w) Complexed With Cd4 And Antibody 17b
pdb|2NY4|C Chain C, Hiv-1 Gp120 Envelope Glycoprotein (K231c, T257s, E268c,
S334a, S375w) Complexed With Cd4 And Antibody 17b
pdb|2NY5|L Chain L, Hiv-1 Gp120 Envelope Glycoprotein (m95w, W96c, I109c,
T257s, V275c, S334a, S375w, Q428c, A433m) Complexed With
Cd4 And Antibody 17b
pdb|2NY6|C Chain C, Hiv-1 Gp120 Envelope Glycoprotein (m95w, W96c, I109c,
T123c, T257s, V275c,s334a, S375w, Q428c, G431c)
Complexed With Cd4 And Antibody 17b
Length = 214
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 18/150 (12%)
Query: 47 GDEWTLHIKWAQKRDAGVYEC-QLSTQPVRSFF-------VNLNVVVPTAEILGSPDLHV 98
G E+TL I Q D VY C Q + P R F + V P+ I D +
Sbjct: 68 GAEFTLTISSLQSEDFAVYYCQQYNNWPPRYTFGQGTRLEIKRTVAAPSVFIFPPSDEQL 127
Query: 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY-----LL 153
G T ++ C + A + W + + S +S +TE+ ++Y L
Sbjct: 128 KSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES----VTEQDSKDSTYSLSSTLT 182
Query: 154 IQQAELKDSGKYSCSPSNADVASVYVHVLN 183
+ +A+ + Y+C ++ ++S N
Sbjct: 183 LSKADYEKHKVYACEVTHQGLSSPVTKSFN 212
>pdb|3QG7|L Chain L, Structural Basis For Ligand Recognition And
Discrimination Of A Quorum Quenching Antibody
Length = 216
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLST 71
Y RFS + R G ++TL I + D G+Y C +T
Sbjct: 54 YKLSSRFSGVPDRFSGSGSGTDFTLKISRVESEDLGIYYCSQTT 97
>pdb|3QG6|A Chain A, Structural Basis For Ligand Recognition And
Discrimination Of A Quorum Quenching Antibody
pdb|3QG6|L Chain L, Structural Basis For Ligand Recognition And
Discrimination Of A Quorum Quenching Antibody
Length = 218
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLST 71
Y RFS + R G ++TL I + D G+Y C +T
Sbjct: 54 YKLSSRFSGVPDRFSGSGSGTDFTLKISRVESEDLGIYYCSQTT 97
>pdb|3IVK|L Chain L, Crystal Structure Of The Catalytic Core Of An Rna
Polymerase Ribozyme Complexed With An Antigen Binding
Antibody Fragment
pdb|3IVK|B Chain B, Crystal Structure Of The Catalytic Core Of An Rna
Polymerase Ribozyme Complexed With An Antigen Binding
Antibody Fragment
Length = 213
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 61/157 (38%), Gaps = 18/157 (11%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF------VNLNVVVPTAEIL 91
RFS R G ++TL I Q D Y CQ S +F + V P+ I
Sbjct: 62 RFSG--SRSGTDFTLTISSLQPEDFATYYCQQSYSFPSTFGQGTKVEIKRTVAAPSVFIF 119
Query: 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY 151
D + G T ++ C + A + W + + S +S +TE+ ++Y
Sbjct: 120 PPSDEQLKSG-TASVVCLLNNFYPREAKVQWKVDNALQSGNSQES----VTEQDSKDSTY 174
Query: 152 -----LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
L + +A+ + Y+C ++ ++S N
Sbjct: 175 SLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,850,193
Number of Sequences: 62578
Number of extensions: 290788
Number of successful extensions: 1921
Number of sequences better than 100.0: 283
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 251
Number of HSP's that attempted gapping in prelim test: 1770
Number of HSP's gapped (non-prelim): 384
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)