Query psy13371
Match_columns 212
No_of_seqs 146 out of 1271
Neff 11.4
Searched_HMMs 46136
Date Fri Aug 16 17:47:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 99.9 2E-22 4.2E-27 162.5 17.8 161 1-184 259-423 (1051)
2 KOG3513|consensus 99.9 2.6E-21 5.5E-26 156.2 16.7 164 1-187 349-517 (1051)
3 PHA02826 IL-1 receptor-like pr 99.8 4.3E-19 9.3E-24 124.5 15.2 152 1-172 40-210 (227)
4 KOG4194|consensus 99.8 1.1E-19 2.4E-24 138.4 11.6 174 2-185 522-707 (873)
5 PHA02785 IL-beta-binding prote 99.8 3.9E-18 8.4E-23 126.7 18.4 160 2-177 140-319 (326)
6 KOG4194|consensus 99.8 5.7E-19 1.2E-23 134.6 12.1 151 2-172 631-783 (873)
7 KOG4221|consensus 99.8 1.2E-17 2.6E-22 135.5 16.9 159 2-184 159-328 (1381)
8 KOG4221|consensus 99.8 8E-18 1.7E-22 136.6 12.0 148 1-172 255-403 (1381)
9 PHA02785 IL-beta-binding prote 99.7 6.3E-16 1.4E-20 115.0 15.8 143 1-172 44-199 (326)
10 cd05771 IgC_Tapasin_R Tapasin- 99.7 2.1E-15 4.6E-20 98.9 12.7 122 51-172 2-130 (139)
11 cd05892 Ig_Myotilin_C C-termin 99.6 3.8E-15 8.2E-20 86.6 9.1 74 1-83 1-75 (75)
12 cd05762 Ig8_MLCK Eighth immuno 99.6 5.4E-14 1.2E-18 86.3 12.1 90 90-187 4-96 (98)
13 cd05893 Ig_Palladin_C C-termin 99.6 1.8E-14 4E-19 83.8 8.8 74 1-83 1-75 (75)
14 cd05863 Ig2_VEGFR-3 Second imm 99.6 1.8E-14 4E-19 81.5 7.4 64 1-83 1-65 (67)
15 cd05744 Ig_Myotilin_C_like Imm 99.6 7E-14 1.5E-18 81.5 9.6 73 1-82 1-74 (75)
16 KOG4222|consensus 99.6 2.2E-14 4.8E-19 116.4 9.9 150 2-172 244-398 (1281)
17 KOG4222|consensus 99.6 2.3E-14 4.9E-19 116.3 9.6 157 2-181 150-312 (1281)
18 cd05882 Ig1_Necl-1 First (N-te 99.5 1.7E-13 3.6E-18 83.3 10.0 80 1-82 15-94 (95)
19 cd05852 Ig5_Contactin-1 Fifth 99.5 4.1E-14 8.9E-19 81.9 6.9 68 1-82 4-72 (73)
20 cd05748 Ig_Titin_like Immunogl 99.5 1.6E-13 3.4E-18 80.0 8.7 71 1-82 2-73 (74)
21 cd05762 Ig8_MLCK Eighth immuno 99.5 1.9E-13 4E-18 83.9 9.3 76 1-87 18-94 (98)
22 cd05851 Ig3_Contactin-1 Third 99.5 2.9E-13 6.3E-18 81.5 9.5 74 87-172 2-75 (88)
23 cd05894 Ig_C5_MyBP-C C5 immuno 99.5 1.9E-13 4.1E-18 81.8 8.5 72 1-82 13-85 (86)
24 cd04975 Ig4_SCFR_like Fourth i 99.5 6.9E-13 1.5E-17 81.6 10.9 73 94-172 11-87 (101)
25 cd05725 Ig3_Robo Third immunog 99.5 1.7E-13 3.7E-18 78.7 7.7 67 1-82 1-68 (69)
26 cd05723 Ig4_Neogenin Fourth im 99.5 1.1E-13 2.4E-18 79.9 6.9 68 1-82 2-70 (71)
27 cd05876 Ig3_L1-CAM Third immun 99.5 3.1E-13 6.8E-18 78.0 7.7 69 1-83 1-70 (71)
28 cd05763 Ig_1 Subgroup of the i 99.5 3.7E-13 7.9E-18 78.7 8.1 72 2-83 2-74 (75)
29 cd04976 Ig2_VEGFR Second immun 99.5 3.8E-13 8.2E-18 77.5 7.8 68 1-83 1-69 (71)
30 cd05735 Ig8_DSCAM Eight immuno 99.5 1.4E-12 2.9E-17 78.5 10.2 78 101-183 1-83 (88)
31 cd05745 Ig3_Peroxidasin Third 99.5 2.3E-13 4.9E-18 79.3 6.7 68 1-82 5-73 (74)
32 cd05726 Ig4_Robo Fhird immunog 99.5 5E-13 1.1E-17 80.9 8.3 79 1-85 4-83 (90)
33 cd05746 Ig4_Peroxidasin Fourth 99.5 2.7E-13 5.9E-18 77.8 6.7 66 1-80 1-67 (69)
34 cd05737 Ig_Myomesin_like_C C-t 99.5 1.8E-12 3.9E-17 78.8 10.7 72 93-172 8-80 (92)
35 cd05854 Ig6_Contactin-2 Sixth 99.5 1.4E-12 3E-17 77.9 10.0 80 1-87 3-85 (85)
36 cd05735 Ig8_DSCAM Eight immuno 99.5 1.3E-12 2.8E-17 78.6 9.9 79 1-87 4-85 (88)
37 cd05745 Ig3_Peroxidasin Third 99.5 4.4E-13 9.6E-18 78.1 7.5 62 100-172 1-62 (74)
38 cd05859 Ig4_PDGFR-alpha Fourth 99.5 6.5E-13 1.4E-17 81.8 8.5 73 95-173 12-88 (101)
39 cd05870 Ig5_NCAM-2 Fifth immun 99.5 8E-13 1.7E-17 81.3 8.9 78 1-82 19-97 (98)
40 cd05747 Ig5_Titin_like M5, fif 99.5 3.2E-12 6.9E-17 77.7 11.3 80 86-173 3-82 (92)
41 cd04969 Ig5_Contactin_like Fif 99.4 4.6E-13 1E-17 77.8 6.9 68 1-82 4-72 (73)
42 cd05852 Ig5_Contactin-1 Fifth 99.4 6.3E-13 1.4E-17 76.9 7.4 62 101-173 1-62 (73)
43 cd05854 Ig6_Contactin-2 Sixth 99.4 3.4E-12 7.3E-17 76.2 10.6 78 102-181 1-81 (85)
44 cd07701 Ig1_Necl-3 First (N-te 99.4 1.4E-12 3.1E-17 79.4 9.2 80 2-83 16-95 (95)
45 cd05734 Ig7_DSCAM Seventh immu 99.4 7.3E-13 1.6E-17 78.2 7.6 66 1-72 1-66 (79)
46 cd05737 Ig_Myomesin_like_C C-t 99.4 1.1E-12 2.4E-17 79.7 8.4 72 1-82 19-91 (92)
47 cd05894 Ig_C5_MyBP-C C5 immuno 99.4 3.9E-12 8.5E-17 76.1 10.4 72 95-173 4-75 (86)
48 cd05760 Ig2_PTK7 Second immuno 99.4 1.2E-12 2.5E-17 76.8 8.0 60 1-72 1-60 (77)
49 PF07679 I-set: Immunoglobulin 99.4 4.7E-12 1E-16 76.7 10.8 77 89-173 3-79 (90)
50 cd05865 Ig1_NCAM-1 First immun 99.4 4E-12 8.7E-17 77.5 9.7 76 92-173 6-83 (96)
51 cd05864 Ig2_VEGFR-2 Second imm 99.4 1.1E-12 2.5E-17 75.0 6.7 67 1-83 1-68 (70)
52 cd07693 Ig1_Robo First immunog 99.4 5.4E-12 1.2E-16 78.0 10.4 86 87-174 2-88 (100)
53 cd04968 Ig3_Contactin_like Thi 99.4 5.6E-12 1.2E-16 76.0 10.2 72 89-172 4-75 (88)
54 cd04974 Ig3_FGFR Third immunog 99.4 8.9E-13 1.9E-17 79.7 6.6 77 1-83 4-89 (90)
55 cd05758 Ig5_KIRREL3-like Fifth 99.4 7.5E-12 1.6E-16 77.0 10.8 83 89-174 4-89 (98)
56 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 2E-12 4.3E-17 75.2 7.8 70 2-83 2-73 (74)
57 cd04970 Ig6_Contactin_like Six 99.4 1.4E-12 3E-17 78.1 7.3 80 1-87 3-85 (85)
58 cd05891 Ig_M-protein_C C-termi 99.4 8.3E-12 1.8E-16 75.8 10.6 82 93-181 8-90 (92)
59 cd05853 Ig6_Contactin-4 Sixth 99.4 4E-12 8.6E-17 75.3 8.9 79 102-182 1-82 (85)
60 cd05865 Ig1_NCAM-1 First immun 99.4 4.6E-12 9.9E-17 77.3 9.4 75 1-83 18-95 (96)
61 cd05870 Ig5_NCAM-2 Fifth immun 99.4 9.1E-12 2E-16 76.6 10.8 80 90-173 5-87 (98)
62 cd05867 Ig4_L1-CAM_like Fourth 99.4 1.9E-12 4E-17 75.8 7.4 71 1-83 4-75 (76)
63 cd05867 Ig4_L1-CAM_like Fourth 99.4 3.2E-12 6.8E-17 74.8 8.2 63 101-172 1-63 (76)
64 cd05859 Ig4_PDGFR-alpha Fourth 99.4 1.8E-12 3.8E-17 79.9 7.4 79 1-84 21-100 (101)
65 cd05732 Ig5_NCAM-1_like Fifth 99.4 7.4E-12 1.6E-16 76.8 10.1 78 91-172 6-84 (96)
66 cd05868 Ig4_NrCAM Fourth immun 99.4 3.1E-12 6.7E-17 74.8 8.0 63 101-172 1-63 (76)
67 cd05863 Ig2_VEGFR-3 Second imm 99.4 2.2E-12 4.8E-17 72.9 7.1 53 104-172 1-53 (67)
68 cd05869 Ig5_NCAM-1 Fifth immun 99.4 9.8E-12 2.1E-16 76.3 10.5 76 94-173 10-86 (97)
69 cd05752 Ig1_FcgammaR_like Frst 99.4 5.4E-12 1.2E-16 73.9 8.9 66 89-172 3-68 (78)
70 cd05731 Ig3_L1-CAM_like Third 99.4 1.6E-12 3.6E-17 75.1 6.7 69 1-83 1-70 (71)
71 cd05728 Ig4_Contactin-2-like F 99.4 4.6E-12 9.9E-17 75.8 8.7 71 91-173 4-74 (85)
72 cd05869 Ig5_NCAM-1 Fifth immun 99.4 4.7E-12 1E-16 77.7 8.8 76 1-82 20-96 (97)
73 cd05743 Ig_Perlecan_D2_like Im 99.4 3.1E-12 6.6E-17 75.3 7.6 61 1-72 4-64 (78)
74 cd04972 Ig_TrkABC_d4 Fourth do 99.4 1.8E-11 3.8E-16 74.1 11.1 73 93-173 7-79 (90)
75 cd05855 Ig_TrkB_d5 Fifth domai 99.4 5.1E-12 1.1E-16 73.8 8.2 69 3-80 3-75 (79)
76 cd05730 Ig3_NCAM-1_like Third 99.4 9.4E-12 2E-16 76.1 9.9 78 95-181 12-92 (95)
77 cd04971 Ig_TrKABC_d5 Fifth dom 99.4 5.8E-12 1.3E-16 74.3 8.5 69 2-79 2-76 (81)
78 cd04975 Ig4_SCFR_like Fourth i 99.4 4.7E-12 1E-16 77.9 8.4 75 1-84 21-100 (101)
79 cd05892 Ig_Myotilin_C C-termin 99.4 5.1E-12 1.1E-16 73.4 8.0 65 104-174 1-65 (75)
80 cd05723 Ig4_Neogenin Fourth im 99.4 7.2E-12 1.6E-16 72.2 8.6 60 103-173 1-60 (71)
81 cd04970 Ig6_Contactin_like Six 99.4 1.5E-11 3.2E-16 73.6 10.2 69 102-172 1-69 (85)
82 cd05764 Ig_2 Subgroup of the i 99.4 4.1E-12 8.9E-17 74.0 7.6 69 1-82 4-73 (74)
83 cd05851 Ig3_Contactin-1 Third 99.4 5.2E-12 1.1E-16 76.0 8.1 68 1-83 19-87 (88)
84 cd07702 Ig2_VEGFR-1 Second imm 99.4 3.4E-12 7.3E-17 73.2 6.8 58 1-72 1-58 (72)
85 cd05853 Ig6_Contactin-4 Sixth 99.4 6.7E-12 1.4E-16 74.3 8.2 80 1-87 3-85 (85)
86 cd05866 Ig1_NCAM-2 First immun 99.4 6.9E-12 1.5E-16 75.8 8.4 71 1-82 18-90 (92)
87 cd05868 Ig4_NrCAM Fourth immun 99.4 5.6E-12 1.2E-16 73.7 7.7 71 1-83 4-75 (76)
88 cd04969 Ig5_Contactin_like Fif 99.4 6.5E-12 1.4E-16 72.9 7.8 61 101-172 1-61 (73)
89 cd05893 Ig_Palladin_C C-termin 99.4 6.8E-12 1.5E-16 73.0 7.8 65 104-174 1-65 (75)
90 cd05747 Ig5_Titin_like M5, fif 99.4 8.3E-12 1.8E-16 75.9 8.4 69 1-80 21-90 (92)
91 cd05866 Ig1_NCAM-2 First immun 99.4 2.8E-11 6.1E-16 73.1 10.6 74 92-174 6-80 (92)
92 cd04978 Ig4_L1-NrCAM_like Four 99.4 6.3E-12 1.4E-16 73.6 7.6 63 101-172 1-63 (76)
93 cd05857 Ig2_FGFR Second immuno 99.3 5.8E-12 1.2E-16 75.5 7.3 71 96-173 4-74 (85)
94 cd05732 Ig5_NCAM-1_like Fifth 99.3 9.2E-12 2E-16 76.4 8.4 76 1-82 19-95 (96)
95 cd05898 Ig5_KIRREL3 Fifth immu 99.3 3.7E-11 8E-16 73.0 10.8 84 88-174 3-89 (98)
96 cd05881 Ig1_Necl-2 First (N-te 99.3 2.8E-11 6E-16 73.2 10.2 79 2-82 16-94 (95)
97 cd05765 Ig_3 Subgroup of the i 99.3 7.5E-12 1.6E-16 74.3 7.5 75 1-82 4-80 (81)
98 cd05857 Ig2_FGFR Second immuno 99.3 1.1E-11 2.4E-16 74.2 8.3 72 1-82 12-84 (85)
99 cd05717 Ig1_Necl-1-3_like Firs 99.3 2E-11 4.3E-16 74.7 9.6 81 1-83 15-95 (95)
100 cd05858 Ig3_FGFR-2 Third immun 99.3 9E-12 1.9E-16 75.4 7.7 77 1-83 4-89 (90)
101 cd05763 Ig_1 Subgroup of the i 99.3 7.9E-12 1.7E-16 73.0 7.0 62 104-172 1-62 (75)
102 PF07679 I-set: Immunoglobulin 99.3 1.5E-11 3.2E-16 74.5 8.4 72 1-83 18-90 (90)
103 cd05891 Ig_M-protein_C C-termi 99.3 1.6E-11 3.5E-16 74.5 8.4 70 2-81 20-90 (92)
104 cd04978 Ig4_L1-NrCAM_like Four 99.3 6.4E-12 1.4E-16 73.6 6.3 71 1-83 4-75 (76)
105 cd05773 Ig8_hNephrin_like Eigh 99.3 3.5E-11 7.6E-16 75.3 9.9 68 100-172 22-92 (109)
106 cd05750 Ig_Pro_neuregulin Immu 99.3 2.5E-11 5.4E-16 70.9 8.6 64 1-72 1-65 (75)
107 cd04972 Ig_TrkABC_d4 Fourth do 99.3 2.2E-11 4.7E-16 73.7 8.6 71 1-82 18-89 (90)
108 cd05743 Ig_Perlecan_D2_like Im 99.3 2.2E-11 4.8E-16 71.6 8.2 66 101-174 1-66 (78)
109 cd05730 Ig3_NCAM-1_like Third 99.3 1.7E-11 3.7E-16 75.0 8.0 72 1-84 21-93 (95)
110 cd05740 Ig_CEACAM_D4 Fourth im 99.3 2.3E-11 5E-16 73.5 8.4 69 94-174 11-79 (91)
111 cd05744 Ig_Myotilin_C_like Imm 99.3 2.7E-11 5.8E-16 70.6 8.4 64 104-173 1-64 (75)
112 cd05736 Ig2_Follistatin_like S 99.3 3E-11 6.5E-16 70.7 8.7 72 2-84 2-74 (76)
113 cd05746 Ig4_Peroxidasin Fourth 99.3 1.5E-11 3.3E-16 70.5 7.2 59 104-173 1-59 (69)
114 cd05728 Ig4_Contactin-2-like F 99.3 1.1E-11 2.4E-16 74.1 6.8 67 1-82 17-84 (85)
115 cd05748 Ig_Titin_like Immunogl 99.3 7.5E-11 1.6E-15 68.6 10.2 62 103-172 1-62 (74)
116 cd05773 Ig8_hNephrin_like Eigh 99.3 4.2E-11 9.1E-16 75.0 9.6 79 1-87 26-108 (109)
117 cd05855 Ig_TrkB_d5 Fifth domai 99.3 4E-11 8.6E-16 70.0 8.8 66 105-173 2-67 (79)
118 cd04968 Ig3_Contactin_like Thi 99.3 1.1E-11 2.3E-16 74.8 6.7 68 1-83 19-87 (88)
119 cd05856 Ig2_FGFRL1-like Second 99.3 1.4E-11 3E-16 73.3 6.9 69 1-82 12-81 (82)
120 cd05740 Ig_CEACAM_D4 Fourth im 99.3 2.7E-11 5.9E-16 73.2 8.2 68 1-83 21-90 (91)
121 cd05724 Ig2_Robo Second immuno 99.3 3.8E-11 8.3E-16 72.0 8.8 73 92-174 2-75 (86)
122 cd04977 Ig1_NCAM-1_like First 99.3 3.7E-11 7.9E-16 72.9 8.7 72 1-82 18-91 (92)
123 cd04973 Ig1_FGFR First immunog 99.3 3.7E-11 8.1E-16 70.8 8.5 67 93-172 1-67 (79)
124 cd04976 Ig2_VEGFR Second immun 99.3 2.3E-11 4.9E-16 70.1 7.4 58 104-173 1-58 (71)
125 cd05875 Ig6_hNeurofascin_like 99.3 6.1E-11 1.3E-15 69.4 9.2 61 1-72 1-65 (77)
126 cd04971 Ig_TrKABC_d5 Fifth dom 99.3 5.5E-11 1.2E-15 70.2 9.0 73 105-181 2-78 (81)
127 cd05848 Ig1_Contactin-5 First 99.3 7.7E-11 1.7E-15 71.8 9.8 76 90-175 5-84 (94)
128 cd05760 Ig2_PTK7 Second immuno 99.3 5.2E-11 1.1E-15 69.8 8.7 60 104-172 1-60 (77)
129 cd05733 Ig6_L1-CAM_like Sixth 99.3 3.6E-11 7.8E-16 70.5 7.9 61 1-72 1-65 (77)
130 cd05876 Ig3_L1-CAM Third immun 99.3 2.8E-11 6.1E-16 69.8 7.2 59 104-173 1-59 (71)
131 cd05726 Ig4_Robo Fhird immunog 99.3 6.4E-11 1.4E-15 71.6 9.1 76 101-183 1-83 (90)
132 cd04977 Ig1_NCAM-1_like First 99.3 1.3E-10 2.7E-15 70.5 10.1 73 92-172 6-79 (92)
133 cd05850 Ig1_Contactin-2 First 99.3 1.5E-10 3.3E-15 70.5 10.3 75 91-175 6-84 (94)
134 cd05738 Ig2_RPTP_IIa_LAR_like 99.3 4.3E-11 9.3E-16 69.6 7.2 62 104-174 1-62 (74)
135 cd05874 Ig6_NrCAM Sixth immuno 99.3 1.1E-10 2.4E-15 68.3 9.0 61 1-72 1-65 (77)
136 cd05858 Ig3_FGFR-2 Third immun 99.3 7.3E-11 1.6E-15 71.4 8.5 78 101-181 1-89 (90)
137 cd04974 Ig3_FGFR Third immunog 99.3 6.6E-11 1.4E-15 71.5 8.3 70 101-172 1-77 (90)
138 cd05749 Ig2_Tyro3_like Second 99.2 8.8E-11 1.9E-15 69.2 8.3 67 92-174 4-71 (81)
139 cd05864 Ig2_VEGFR-2 Second imm 99.2 4.5E-11 9.7E-16 68.4 6.9 57 104-173 1-57 (70)
140 cd05764 Ig_2 Subgroup of the i 99.2 9.8E-11 2.1E-15 68.1 8.3 62 101-173 1-63 (74)
141 cd07702 Ig2_VEGFR-1 Second imm 99.2 7.5E-11 1.6E-15 67.7 7.6 58 104-172 1-58 (72)
142 cd05849 Ig1_Contactin-1 First 99.2 1.4E-10 3E-15 70.4 9.1 63 101-174 19-82 (93)
143 cd05856 Ig2_FGFRL1-like Second 99.2 1.1E-10 2.5E-15 69.3 8.6 67 97-173 5-71 (82)
144 cd05895 Ig_Pro_neuregulin-1 Im 99.2 1.4E-10 3E-15 67.9 8.7 65 1-72 1-66 (76)
145 cd05756 Ig1_IL1R_like First im 99.2 5.4E-11 1.2E-15 72.3 7.1 71 1-82 17-93 (94)
146 cd05756 Ig1_IL1R_like First im 99.2 5.4E-11 1.2E-15 72.3 7.0 71 95-173 8-83 (94)
147 cd05722 Ig1_Neogenin First imm 99.2 2.5E-10 5.3E-15 69.8 9.9 76 91-175 4-85 (95)
148 cd05725 Ig3_Robo Third immunog 99.2 4.8E-11 1E-15 68.4 6.3 58 104-173 1-58 (69)
149 cd05882 Ig1_Necl-1 First (N-te 99.2 2.9E-10 6.3E-15 69.1 10.0 76 94-172 5-84 (95)
150 cd05742 Ig1_VEGFR_like First i 99.2 1E-10 2.2E-15 69.8 7.9 71 101-172 1-71 (84)
151 cd05862 Ig1_VEGFR First immuno 99.2 1.6E-10 3.5E-15 69.1 8.5 72 101-172 1-72 (86)
152 cd05739 Ig3_RPTP_IIa_LAR_like 99.2 5.8E-11 1.3E-15 67.9 6.2 62 1-79 4-66 (69)
153 cd05731 Ig3_L1-CAM_like Third 99.2 9E-11 2E-15 67.7 7.0 59 104-173 1-59 (71)
154 cd05724 Ig2_Robo Second immuno 99.2 9.6E-11 2.1E-15 70.3 7.4 59 1-72 14-73 (86)
155 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 3.2E-10 6.9E-15 67.5 9.4 77 1-84 4-83 (84)
156 cd05742 Ig1_VEGFR_like First i 99.2 9.3E-11 2E-15 70.0 6.9 77 1-83 4-83 (84)
157 cd04979 Ig_Semaphorin_C Immuno 99.2 2.2E-10 4.9E-15 69.1 8.2 71 93-172 3-73 (89)
158 cd05895 Ig_Pro_neuregulin-1 Im 99.2 2.9E-10 6.3E-15 66.5 8.3 68 104-174 1-68 (76)
159 cd05750 Ig_Pro_neuregulin Immu 99.2 1.8E-10 3.9E-15 67.2 7.4 66 104-174 1-67 (75)
160 cd05739 Ig3_RPTP_IIa_LAR_like 99.2 4.3E-10 9.3E-15 64.3 8.6 60 101-174 1-60 (69)
161 cd05765 Ig_3 Subgroup of the i 99.2 2.2E-10 4.8E-15 67.8 7.7 66 101-173 1-70 (81)
162 cd05873 Ig_Sema4D_like Immunog 99.2 2E-10 4.3E-15 68.3 7.2 69 92-172 2-70 (87)
163 cd04973 Ig1_FGFR First immunog 99.2 2.5E-10 5.4E-15 67.2 7.4 65 1-81 12-77 (79)
164 cd05848 Ig1_Contactin-5 First 99.2 3E-10 6.5E-15 69.2 7.8 59 1-72 22-81 (94)
165 cd05861 Ig1_PDGFR-alphabeta Fr 99.1 1.1E-09 2.5E-14 65.1 9.9 68 101-172 1-68 (84)
166 cd05849 Ig1_Contactin-1 First 99.1 2.8E-10 6.2E-15 69.0 7.4 58 1-72 22-80 (93)
167 cd07701 Ig1_Necl-3 First (N-te 99.1 1.1E-09 2.4E-14 66.8 9.5 77 93-172 4-84 (95)
168 cd07693 Ig1_Robo First immunog 99.1 6.6E-10 1.4E-14 68.6 8.6 77 1-83 19-99 (100)
169 cd05734 Ig7_DSCAM Seventh immu 99.1 3.3E-10 7.2E-15 66.7 6.9 62 104-172 1-66 (79)
170 cd05736 Ig2_Follistatin_like S 99.1 3.6E-10 7.9E-15 66.1 7.0 61 104-172 1-61 (76)
171 cd05753 Ig2_FcgammaR_like Seco 99.1 3.7E-10 8E-15 67.1 7.0 67 92-173 5-71 (83)
172 cd05722 Ig1_Neogenin First imm 99.1 5.5E-10 1.2E-14 68.3 7.6 60 1-72 17-81 (95)
173 cd04967 Ig1_Contactin First Ig 99.1 1.9E-09 4E-14 65.4 9.8 66 100-175 18-84 (91)
174 cd07690 Ig1_CD4 First immunogl 99.1 4.9E-10 1.1E-14 67.8 6.9 72 1-72 10-87 (94)
175 cd05758 Ig5_KIRREL3-like Fifth 99.1 1.6E-09 3.5E-14 66.6 9.1 73 1-80 19-96 (98)
176 cd05860 Ig4_SCFR Fourth immuno 99.1 4.1E-09 8.8E-14 63.8 10.5 86 94-181 11-97 (101)
177 cd05875 Ig6_hNeurofascin_like 99.1 1.4E-09 3.1E-14 63.6 8.4 65 104-176 1-69 (77)
178 cd05850 Ig1_Contactin-2 First 99.1 1.7E-09 3.6E-14 65.9 8.9 59 1-72 22-81 (94)
179 PHA03376 BARF1; Provisional 99.1 1.1E-08 2.4E-13 68.0 12.8 122 2-127 30-163 (221)
180 cd05874 Ig6_NrCAM Sixth immuno 99.1 1.5E-09 3.2E-14 63.5 7.8 64 104-175 1-68 (77)
181 cd05733 Ig6_L1-CAM_like Sixth 99.1 7.2E-10 1.6E-14 64.9 6.4 64 104-175 1-68 (77)
182 cd05713 Ig_MOG_like Immunoglob 99.0 3.9E-09 8.5E-14 65.1 9.2 83 1-83 4-99 (100)
183 cd05729 Ig2_FGFR_like Second i 99.0 4.7E-09 1E-13 62.6 9.0 70 97-173 5-74 (85)
184 cd05757 Ig2_IL1R_like Second i 99.0 2.5E-09 5.5E-14 64.6 7.7 67 96-172 5-74 (92)
185 cd05729 Ig2_FGFR_like Second i 99.0 2.7E-09 5.9E-14 63.7 7.9 71 2-82 13-84 (85)
186 cd05727 Ig2_Contactin-2-like S 99.0 1.5E-09 3.1E-14 65.6 6.5 70 96-173 13-83 (96)
187 cd05775 Ig_SLAM-CD84_like_N N- 99.0 2.9E-09 6.4E-14 65.2 8.0 73 1-73 7-84 (97)
188 cd05717 Ig1_Necl-1-3_like Firs 99.0 8.2E-09 1.8E-13 63.0 9.8 77 94-173 5-85 (95)
189 cd05888 Ig1_Nectin-4_like Frst 99.0 6.5E-09 1.4E-13 64.0 9.3 83 1-83 3-99 (100)
190 cd04979 Ig_Semaphorin_C Immuno 99.0 2.2E-09 4.7E-14 64.8 7.1 72 1-84 14-87 (89)
191 cd04983 IgV_TCR_alpha_like Imm 99.0 4E-09 8.6E-14 66.2 8.4 72 1-72 16-92 (109)
192 cd05900 Ig_Aggrecan Immunoglob 99.0 1.3E-08 2.8E-13 63.6 10.4 84 1-84 5-109 (112)
193 cd05752 Ig1_FcgammaR_like Frst 99.0 1.7E-09 3.7E-14 63.3 6.0 59 1-82 18-77 (78)
194 cd05845 Ig2_L1-CAM_like Second 99.0 2.7E-09 5.8E-14 64.3 6.7 73 94-176 11-85 (95)
195 cd05754 Ig3_Perlecan_like Thir 99.0 4.5E-09 9.7E-14 62.8 7.6 70 91-173 6-75 (85)
196 PF00047 ig: Immunoglobulin do 99.0 3.2E-09 6.9E-14 59.8 6.3 64 101-169 1-64 (64)
197 cd05887 Ig1_Nectin-3_like Firs 99.0 1.2E-08 2.7E-13 61.8 9.1 82 1-83 3-95 (96)
198 cd07690 Ig1_CD4 First immunogl 99.0 4.6E-09 1E-13 63.5 7.1 76 97-174 3-89 (94)
199 cd05873 Ig_Sema4D_like Immunog 99.0 5.2E-09 1.1E-13 62.3 7.1 57 1-72 14-70 (87)
200 cd05889 Ig1_DNAM-1_like First 99.0 1.5E-08 3.2E-13 61.5 9.2 82 1-83 3-93 (96)
201 cd05886 Ig1_Nectin-1_like Firs 99.0 1.4E-08 3.1E-13 62.0 9.2 82 1-83 3-98 (99)
202 cd05714 Ig_CSPGs_LP Immunoglob 98.9 1.9E-08 4E-13 62.8 9.8 83 1-84 5-103 (106)
203 cd05879 Ig_P0 Immunoglobulin ( 98.9 1.6E-08 3.5E-13 63.7 9.3 72 1-72 16-102 (116)
204 cd05878 Ig_Aggrecan_like Immun 98.9 2.8E-08 6.1E-13 62.2 10.4 84 1-84 5-107 (110)
205 cd05877 Ig_LP_like Immunoglobu 98.9 2.1E-08 4.5E-13 62.6 9.6 83 1-84 5-103 (106)
206 cd05871 Ig_Semaphorin_classIII 98.9 1.3E-08 2.8E-13 61.5 8.3 74 1-84 14-89 (91)
207 cd05718 Ig1_PVR_like First imm 98.9 1.9E-08 4.2E-13 61.8 9.3 82 1-83 3-97 (98)
208 PF00047 ig: Immunoglobulin do 98.9 8.9E-09 1.9E-13 58.0 7.1 60 1-69 4-64 (64)
209 cd05885 Ig2_Necl-4 Second immu 98.9 1.5E-08 3.2E-13 59.1 7.9 63 1-72 2-65 (80)
210 cd04967 Ig1_Contactin First Ig 98.9 6.5E-09 1.4E-13 62.9 6.8 58 2-72 23-81 (91)
211 PF13895 Ig_2: Immunoglobulin 98.9 2.3E-08 4.9E-13 58.9 9.0 59 96-172 9-67 (80)
212 cd05879 Ig_P0 Immunoglobulin ( 98.9 4.8E-08 1E-12 61.6 10.5 81 92-172 4-102 (116)
213 smart00406 IGv Immunoglobulin 98.9 1.1E-08 2.5E-13 60.3 7.3 69 1-69 2-81 (81)
214 smart00408 IGc2 Immunoglobulin 98.9 9.4E-09 2E-13 57.3 6.6 61 100-172 1-61 (63)
215 cd05741 Ig_CEACAM_D1_like Firs 98.9 1.5E-08 3.2E-13 61.5 7.8 68 1-73 4-80 (92)
216 cd05901 Ig_Versican Immunoglob 98.9 6.6E-08 1.4E-12 60.5 10.7 84 1-84 5-114 (117)
217 cd05902 Ig_Neurocan Immunoglob 98.9 2.7E-08 5.8E-13 62.0 9.0 84 1-84 5-107 (110)
218 cd05754 Ig3_Perlecan_like Thir 98.9 7.3E-09 1.6E-13 61.9 6.3 55 1-72 19-74 (85)
219 cd05885 Ig2_Necl-4 Second immu 98.9 2.3E-08 5E-13 58.3 8.1 63 103-172 1-65 (80)
220 cd05871 Ig_Semaphorin_classIII 98.9 2.2E-08 4.8E-13 60.4 8.4 68 96-172 6-75 (91)
221 cd05881 Ig1_Necl-2 First (N-te 98.9 8.2E-08 1.8E-12 58.1 10.4 84 94-180 5-92 (95)
222 cd05753 Ig2_FcgammaR_like Seco 98.9 6.5E-09 1.4E-13 61.7 5.4 53 1-72 17-70 (83)
223 cd05845 Ig2_L1-CAM_like Second 98.9 3.9E-09 8.6E-14 63.6 4.5 59 1-72 21-81 (95)
224 cd00099 IgV Immunoglobulin var 98.9 2.4E-08 5.2E-13 62.2 7.9 73 1-73 9-90 (105)
225 cd05749 Ig2_Tyro3_like Second 98.8 2.2E-08 4.7E-13 59.0 7.0 53 1-72 16-69 (81)
226 cd05715 Ig_P0-like Immunoglobu 98.8 5.8E-08 1.3E-12 61.6 9.1 72 1-72 16-102 (116)
227 cd05757 Ig2_IL1R_like Second i 98.8 2.9E-08 6.4E-13 59.9 7.2 56 2-72 14-74 (92)
228 cd05897 Ig2_IL1R2_like Second 98.8 2.8E-08 6.1E-13 60.1 6.9 69 97-172 6-77 (95)
229 cd05880 Ig_EVA1 Immunoglobulin 98.8 6.1E-08 1.3E-12 61.2 8.7 72 1-72 16-101 (115)
230 cd05862 Ig1_VEGFR First immuno 98.8 4.6E-08 1E-12 58.4 7.7 79 1-84 4-85 (86)
231 cd05846 Ig1_MRC-OX-2_like Firs 98.8 6.7E-08 1.5E-12 59.2 8.4 82 1-83 4-96 (97)
232 cd05759 Ig2_KIRREL3-like Secon 98.8 8.5E-08 1.8E-12 56.8 8.5 65 104-172 2-68 (82)
233 smart00409 IG Immunoglobulin. 98.8 3.5E-07 7.6E-12 54.1 11.4 70 95-172 3-73 (86)
234 smart00410 IG_like Immunoglobu 98.8 3.5E-07 7.6E-12 54.1 11.4 70 95-172 3-73 (86)
235 cd05759 Ig2_KIRREL3-like Secon 98.8 9.1E-08 2E-12 56.7 8.4 63 1-72 2-68 (82)
236 cd05716 Ig_pIgR Immunoglobulin 98.8 7.3E-08 1.6E-12 59.2 8.3 73 1-73 10-87 (98)
237 cd04983 IgV_TCR_alpha_like Imm 98.8 4.8E-08 1E-12 61.2 7.6 80 91-172 3-92 (109)
238 cd04982 IgV_TCR_gamma Immunogl 98.8 6.3E-08 1.4E-12 61.4 8.1 71 1-71 16-98 (116)
239 smart00408 IGc2 Immunoglobulin 98.8 2.6E-08 5.7E-13 55.4 5.7 57 1-72 5-61 (63)
240 PHA02826 IL-1 receptor-like pr 98.8 3E-08 6.4E-13 70.1 7.0 59 1-72 147-210 (227)
241 smart00410 IG_like Immunoglobu 98.8 2.1E-07 4.5E-12 55.1 9.7 62 1-72 12-73 (86)
242 smart00409 IG Immunoglobulin. 98.8 2.1E-07 4.5E-12 55.1 9.7 62 1-72 12-73 (86)
243 cd05896 Ig1_IL1RAPL-1_like Fir 98.7 1.1E-07 2.4E-12 57.8 8.0 74 96-173 10-93 (104)
244 cd05727 Ig2_Contactin-2-like S 98.7 2.2E-08 4.8E-13 60.5 4.9 61 1-72 21-82 (96)
245 cd05899 IgV_TCR_beta Immunoglo 98.7 8E-08 1.7E-12 60.3 7.5 70 1-72 16-94 (110)
246 cd05899 IgV_TCR_beta Immunoglo 98.7 8.8E-08 1.9E-12 60.1 7.4 78 91-172 3-94 (110)
247 PF07686 V-set: Immunoglobulin 98.7 2.9E-07 6.2E-12 58.0 9.8 72 1-72 19-101 (114)
248 cd05872 Ig_Sema4B_like Immunog 98.7 1.8E-07 4E-12 55.3 8.2 65 95-172 5-69 (85)
249 cd04984 IgV_L_lambda Immunoglo 98.7 1.7E-07 3.7E-12 57.5 8.0 69 1-71 9-84 (98)
250 cd00098 IgC Immunoglobulin Con 98.7 5.2E-08 1.1E-12 59.4 5.6 74 99-173 11-85 (95)
251 cd05774 Ig_CEACAM_D1 First imm 98.7 2.6E-07 5.6E-12 57.2 8.6 67 2-73 17-93 (105)
252 cd07706 IgV_TCR_delta Immunogl 98.7 1.2E-07 2.5E-12 60.2 7.3 72 1-72 17-94 (116)
253 cd05883 Ig2_Necl-2 Second immu 98.7 5.2E-07 1.1E-11 52.8 9.4 65 104-172 2-66 (82)
254 cd05897 Ig2_IL1R2_like Second 98.7 6.8E-08 1.5E-12 58.4 5.3 59 2-72 14-77 (95)
255 cd04980 IgV_L_kappa Immunoglob 98.7 1.7E-07 3.7E-12 58.4 7.1 69 1-71 18-92 (106)
256 cd07700 IgV_CD8_beta Immunoglo 98.6 4E-07 8.7E-12 56.8 8.3 71 1-71 9-93 (107)
257 KOG3515|consensus 98.6 6.9E-07 1.5E-11 72.0 11.4 156 1-172 25-185 (741)
258 cd05715 Ig_P0-like Immunoglobu 98.6 8.6E-07 1.9E-11 56.2 9.7 81 92-172 4-102 (116)
259 cd04982 IgV_TCR_gamma Immunogl 98.6 4.2E-07 9.1E-12 57.6 8.3 81 91-171 3-98 (116)
260 PF13895 Ig_2: Immunoglobulin 98.6 2.6E-07 5.6E-12 54.3 6.6 61 1-82 17-79 (80)
261 cd05712 Ig_Siglec_N Immunoglob 98.6 3.1E-07 6.7E-12 58.5 7.1 72 1-72 17-102 (119)
262 cd05880 Ig_EVA1 Immunoglobulin 98.6 1.2E-06 2.7E-11 55.3 9.8 80 93-172 5-101 (115)
263 cd05896 Ig1_IL1RAPL-1_like Fir 98.6 4.2E-07 9.1E-12 55.3 6.9 53 13-73 41-93 (104)
264 cd05898 Ig5_KIRREL3 Fifth immu 98.6 1.4E-06 3E-11 53.1 9.2 72 2-80 20-96 (98)
265 cd05751 Ig1_LILRB1_like First 98.6 3.3E-07 7.2E-12 55.4 6.3 67 94-172 9-75 (91)
266 PF13927 Ig_3: Immunoglobulin 98.5 1.3E-07 2.9E-12 54.7 4.3 60 102-171 16-75 (75)
267 cd05720 Ig_CD8_alpha Immunoglo 98.5 6.3E-07 1.4E-11 55.6 7.4 69 1-71 9-90 (104)
268 cd04980 IgV_L_kappa Immunoglob 98.5 8.3E-07 1.8E-11 55.3 7.8 80 90-172 4-93 (106)
269 cd05847 IgC_CH2_IgE CH2 domain 98.5 6.4E-07 1.4E-11 54.3 6.9 73 99-172 12-85 (94)
270 cd00099 IgV Immunoglobulin var 98.5 8E-07 1.7E-11 55.2 7.6 77 97-174 2-91 (105)
271 cd05872 Ig_Sema4B_like Immunog 98.5 6.1E-07 1.3E-11 53.0 6.5 66 1-82 14-79 (85)
272 cd07699 IgC_L Immunoglobulin C 98.5 4.3E-07 9.3E-12 55.8 6.1 80 92-172 8-88 (100)
273 PF07686 V-set: Immunoglobulin 98.5 2.5E-06 5.5E-11 53.6 9.5 79 93-172 8-101 (114)
274 cd05860 Ig4_SCFR Fourth immuno 98.5 1.6E-06 3.4E-11 52.7 7.8 75 1-83 21-99 (101)
275 cd05883 Ig2_Necl-2 Second immu 98.5 3.9E-06 8.5E-11 49.1 9.3 75 1-84 2-80 (82)
276 cd05755 Ig2_ICAM-1_like Second 98.5 2E-06 4.3E-11 52.4 8.2 75 93-172 8-84 (100)
277 cd05774 Ig_CEACAM_D1 First imm 98.5 4.9E-06 1.1E-10 51.5 10.0 71 96-173 8-93 (105)
278 cd05877 Ig_LP_like Immunoglobu 98.5 4.3E-06 9.3E-11 52.1 9.7 72 100-172 1-90 (106)
279 smart00407 IGc1 Immunoglobulin 98.5 1.2E-06 2.5E-11 50.9 6.6 68 104-172 2-70 (75)
280 cd05878 Ig_Aggrecan_like Immun 98.4 5.1E-06 1.1E-10 52.0 9.6 73 100-172 1-94 (110)
281 cd04981 IgV_H Immunoglobulin ( 98.4 2.1E-06 4.6E-11 54.4 7.8 71 1-71 15-97 (117)
282 cd05768 IgC_CH4 CH4 domain (fo 98.4 1E-06 2.2E-11 54.3 6.1 80 93-172 8-90 (102)
283 cd05714 Ig_CSPGs_LP Immunoglob 98.4 5.7E-06 1.2E-10 51.5 9.6 72 100-172 1-90 (106)
284 cd05761 Ig2_Necl-1-4_like Seco 98.4 3.1E-06 6.8E-11 50.0 8.0 63 1-72 2-67 (82)
285 cd07697 IgC_TCR_gamma T cell r 98.4 1.9E-06 4.2E-11 52.2 7.0 80 90-173 5-85 (96)
286 PHA02987 Ig domain OX-2-like p 98.4 5.8E-06 1.3E-10 55.4 9.7 83 1-85 33-123 (189)
287 cd07706 IgV_TCR_delta Immunogl 98.4 3.1E-06 6.6E-11 53.7 8.2 81 91-172 4-94 (116)
288 cd05900 Ig_Aggrecan Immunoglob 98.4 8.6E-06 1.9E-10 51.0 9.9 73 100-172 1-96 (112)
289 cd05741 Ig_CEACAM_D1_like Firs 98.4 2.7E-06 5.9E-11 51.4 7.3 66 101-173 1-80 (92)
290 cd05761 Ig2_Necl-1-4_like Seco 98.4 2E-06 4.3E-11 50.9 6.3 64 104-172 2-67 (82)
291 cd05716 Ig_pIgR Immunoglobulin 98.4 3.7E-06 8E-11 51.6 7.7 76 97-173 3-87 (98)
292 PF13927 Ig_3: Immunoglobulin 98.4 1.2E-06 2.7E-11 50.6 5.3 57 1-71 18-75 (75)
293 cd07700 IgV_CD8_beta Immunoglo 98.3 5.3E-06 1.1E-10 51.8 8.1 74 97-171 2-93 (107)
294 cd07698 IgC_MHC_I_alpha3 Class 98.3 5.6E-06 1.2E-10 50.2 7.9 68 101-172 14-82 (93)
295 cd05718 Ig1_PVR_like First imm 98.3 8.1E-06 1.8E-10 50.0 8.5 69 102-171 1-83 (98)
296 cd04981 IgV_H Immunoglobulin ( 98.3 4.8E-06 1E-10 52.8 7.6 80 92-171 3-97 (117)
297 cd05713 Ig_MOG_like Immunoglob 98.3 6.8E-06 1.5E-10 50.6 8.0 72 101-172 1-87 (100)
298 cd05751 Ig1_LILRB1_like First 98.3 4.4E-06 9.5E-11 50.4 6.8 57 1-72 19-75 (91)
299 cd04984 IgV_L_lambda Immunoglo 98.3 3.5E-06 7.6E-11 51.6 6.5 74 97-172 2-85 (98)
300 cd05769 IgC_TCR_beta T cell re 98.3 3.5E-06 7.5E-11 52.9 6.2 81 91-172 8-91 (115)
301 cd07696 IgC_CH3 CH3 domain (th 98.3 4.6E-06 9.9E-11 50.8 6.6 79 92-172 5-85 (96)
302 cd00096 Ig Immunoglobulin doma 98.3 4E-06 8.8E-11 47.3 6.0 66 1-73 1-66 (74)
303 cd05711 Ig_FcalphaRI Immunoglo 98.3 9.1E-06 2E-10 49.4 7.5 70 92-170 6-75 (94)
304 cd05772 IgC_SIRP Signal-regula 98.3 1.1E-05 2.5E-10 50.4 8.1 73 96-172 16-91 (111)
305 cd07705 Ig2_Necl-1 Second immu 98.3 5.6E-06 1.2E-10 49.0 6.3 65 104-172 2-68 (83)
306 cd05902 Ig_Neurocan Immunoglob 98.3 2.3E-05 5E-10 48.9 9.3 81 101-181 2-106 (110)
307 cd05775 Ig_SLAM-CD84_like_N N- 98.2 5.1E-06 1.1E-10 50.8 6.2 74 99-173 2-84 (97)
308 cd07705 Ig2_Necl-1 Second immu 98.2 1.6E-05 3.5E-10 47.0 8.2 63 1-72 2-68 (83)
309 cd07694 Ig2_CD4 Second immunog 98.2 1.4E-05 2.9E-10 47.0 7.4 55 1-72 17-73 (88)
310 cd05884 Ig2_Necl-3 Second immu 98.2 6.3E-06 1.4E-10 48.7 6.2 66 104-172 2-68 (83)
311 cd00098 IgC Immunoglobulin Con 98.2 4.6E-06 9.9E-11 50.8 5.7 64 1-73 16-85 (95)
312 cd05712 Ig_Siglec_N Immunoglob 98.2 2.9E-05 6.4E-10 49.4 9.5 82 91-172 4-102 (119)
313 cd04986 IgC_CH2 CH2 domain (se 98.2 6.1E-06 1.3E-10 50.2 5.8 78 91-172 9-88 (99)
314 cd05770 IgC_beta2m Class I maj 98.2 1.8E-05 4E-10 47.7 7.8 69 99-172 13-82 (93)
315 cd05767 IgC_MHC_II_alpha Class 98.2 1.2E-05 2.6E-10 48.7 6.9 69 100-172 14-83 (94)
316 cd05721 IgV_CTLA-4 Immunoglobu 98.2 1.7E-05 3.7E-10 49.2 7.5 70 1-70 16-94 (115)
317 cd05846 Ig1_MRC-OX-2_like Firs 98.2 2.3E-05 4.9E-10 47.9 8.0 70 101-172 1-83 (97)
318 cd07694 Ig2_CD4 Second immunog 98.2 3.2E-05 6.9E-10 45.4 8.0 65 96-172 9-73 (88)
319 cd05766 IgC_MHC_II_beta Class 98.2 3.8E-05 8.2E-10 46.6 8.7 70 99-172 12-82 (94)
320 cd05889 Ig1_DNAM-1_like First 98.1 4.1E-05 8.8E-10 46.5 8.4 77 103-181 2-93 (96)
321 cd05720 Ig_CD8_alpha Immunoglo 98.1 2.4E-05 5.1E-10 48.5 7.6 70 98-171 3-90 (104)
322 cd05901 Ig_Versican Immunoglob 98.1 9.4E-05 2E-09 46.4 10.2 23 150-172 79-101 (117)
323 PHA02987 Ig domain OX-2-like p 98.1 2.2E-05 4.8E-10 52.7 7.5 76 95-171 24-106 (189)
324 cd05886 Ig1_Nectin-1_like Firs 98.1 0.00012 2.7E-09 44.7 10.1 69 103-172 2-85 (99)
325 cd05887 Ig1_Nectin-3_like Firs 98.1 3.7E-05 8.1E-10 46.7 7.6 69 102-172 1-82 (96)
326 cd04985 IgC_CH1 CH1 domain (fi 98.1 2.9E-05 6.2E-10 47.2 6.9 72 100-173 15-87 (95)
327 cd05888 Ig1_Nectin-4_like Frst 98.1 8.7E-05 1.9E-09 45.6 8.9 70 103-172 2-86 (100)
328 PF07654 C1-set: Immunoglobuli 98.1 8.2E-06 1.8E-10 48.3 4.2 69 100-172 7-76 (83)
329 cd05884 Ig2_Necl-3 Second immu 98.0 4.3E-05 9.3E-10 45.2 7.2 63 1-72 2-68 (83)
330 PHA03376 BARF1; Provisional 98.0 0.0002 4.4E-09 48.2 10.8 76 95-172 20-109 (221)
331 smart00406 IGv Immunoglobulin 98.0 5.8E-05 1.2E-09 44.2 7.7 67 103-169 1-81 (81)
332 PF08205 C2-set_2: CD80-like C 97.9 7.4E-05 1.6E-09 44.8 6.8 69 101-172 14-83 (89)
333 cd00096 Ig Immunoglobulin doma 97.9 6.7E-05 1.4E-09 42.1 6.3 66 104-173 1-66 (74)
334 cd05721 IgV_CTLA-4 Immunoglobu 97.9 0.00017 3.7E-09 44.8 7.8 78 93-170 5-94 (115)
335 smart00407 IGc1 Immunoglobulin 97.8 0.00022 4.7E-09 41.3 7.5 63 2-72 3-70 (75)
336 PHA03269 envelope glycoprotein 97.8 0.002 4.4E-08 49.6 14.0 122 46-170 285-414 (566)
337 cd05711 Ig_FcalphaRI Immunoglo 97.8 0.00012 2.6E-09 44.4 6.0 59 1-71 18-76 (94)
338 KOG3515|consensus 97.7 9.1E-05 2E-09 60.2 5.4 162 2-171 116-286 (741)
339 PF08204 V-set_CD47: CD47 immu 97.6 9.5E-05 2.1E-09 47.0 4.0 80 1-83 30-119 (130)
340 PHA03271 envelope glycoprotein 97.6 0.0045 9.8E-08 46.8 13.1 124 45-170 202-332 (490)
341 cd05771 IgC_Tapasin_R Tapasin- 97.6 0.00072 1.6E-08 44.2 8.0 64 2-72 57-130 (139)
342 cd07703 Ig2_Nectin-2_like Seco 97.6 0.00082 1.8E-08 40.7 7.5 63 1-72 18-81 (95)
343 cd07698 IgC_MHC_I_alpha3 Class 97.5 0.00062 1.3E-08 41.2 6.6 63 1-73 17-83 (93)
344 cd05719 Ig2_PVR_like Second im 97.5 0.0012 2.7E-08 40.0 7.6 62 2-72 19-81 (95)
345 PHA03273 envelope glycoprotein 97.5 0.0039 8.4E-08 47.8 11.4 119 50-170 198-322 (486)
346 PHA03270 envelope glycoprotein 97.4 0.0049 1.1E-07 46.9 11.5 119 50-170 182-305 (466)
347 cd07699 IgC_L Immunoglobulin C 97.4 0.00091 2E-08 41.1 6.5 63 1-72 20-88 (100)
348 cd07703 Ig2_Nectin-2_like Seco 97.4 0.0033 7.1E-08 38.1 8.5 66 101-172 15-81 (95)
349 cd07692 Ig_CD3_epsilon Immunog 97.4 0.00033 7.1E-09 38.7 3.6 52 99-172 5-56 (65)
350 cd05847 IgC_CH2_IgE CH2 domain 97.4 0.0014 2.9E-08 39.8 6.7 63 2-73 18-86 (94)
351 cd05719 Ig2_PVR_like Second im 97.4 0.0024 5.2E-08 38.8 7.7 67 100-172 14-81 (95)
352 cd05755 Ig2_ICAM-1_like Second 97.3 0.0015 3.2E-08 39.9 6.4 62 1-72 19-84 (100)
353 PF08205 C2-set_2: CD80-like C 97.3 0.0031 6.8E-08 37.7 7.6 65 2-73 18-84 (89)
354 cd07696 IgC_CH3 CH3 domain (th 97.2 0.0029 6.3E-08 38.5 7.0 65 2-73 18-86 (96)
355 cd07691 Ig_CD3_gamma_delta Imm 97.2 0.0015 3.3E-08 36.4 4.8 46 1-71 9-54 (69)
356 PHA02633 hypothetical protein; 97.1 0.0018 3.9E-08 35.2 4.7 37 48-84 16-53 (63)
357 cd05772 IgC_SIRP Signal-regula 97.1 0.0036 7.8E-08 39.2 6.5 62 2-73 25-92 (111)
358 PF07654 C1-set: Immunoglobuli 97.1 0.0014 3.1E-08 38.6 4.5 62 2-73 12-77 (83)
359 cd05770 IgC_beta2m Class I maj 97.0 0.0061 1.3E-07 36.8 6.8 59 2-73 19-83 (93)
360 PHA02633 hypothetical protein; 97.0 0.0022 4.8E-08 34.8 4.2 34 151-184 19-55 (63)
361 cd05766 IgC_MHC_II_beta Class 97.0 0.0078 1.7E-07 36.5 7.1 60 2-73 18-83 (94)
362 PHA02914 Immunoglobulin-like d 96.9 0.1 2.2E-06 39.7 13.5 76 97-172 275-368 (500)
363 cd05767 IgC_MHC_II_alpha Class 96.9 0.0095 2.1E-07 36.1 6.8 60 2-73 19-84 (94)
364 cd04985 IgC_CH1 CH1 domain (fi 96.8 0.0069 1.5E-07 36.8 6.1 64 2-73 20-87 (95)
365 cd07691 Ig_CD3_gamma_delta Imm 96.8 0.0084 1.8E-07 33.5 5.5 59 100-180 5-64 (69)
366 cd05769 IgC_TCR_beta T cell re 96.8 0.013 2.9E-07 36.9 7.2 63 2-73 22-92 (115)
367 cd07704 Ig2_Nectin-3-4_like Se 96.7 0.023 5.1E-07 34.5 7.6 71 96-172 11-83 (97)
368 cd07692 Ig_CD3_epsilon Immunog 96.7 0.0053 1.1E-07 34.0 4.3 47 1-72 10-56 (65)
369 PF07354 Sp38: Zona-pellucida- 96.7 0.0026 5.7E-08 45.2 3.8 48 11-71 11-58 (271)
370 cd05768 IgC_CH4 CH4 domain (fo 96.7 0.0095 2.1E-07 36.7 5.8 65 1-73 19-91 (102)
371 cd04986 IgC_CH2 CH2 domain (se 96.6 0.016 3.5E-07 35.4 6.6 64 2-73 23-89 (99)
372 cd07689 Ig2_VCAM-1 Second immu 96.5 0.026 5.5E-07 34.2 6.5 72 97-171 11-84 (99)
373 cd07704 Ig2_Nectin-3-4_like Se 96.3 0.042 9.2E-07 33.4 7.1 60 4-72 23-83 (97)
374 cd07697 IgC_TCR_gamma T cell r 96.3 0.035 7.6E-07 33.7 6.6 21 2-22 20-42 (96)
375 PF11465 Receptor_2B4: Natural 95.9 0.053 1.1E-06 33.2 6.0 43 37-83 62-104 (108)
376 PHA03042 CD47-like protein; Pr 95.6 0.094 2E-06 37.8 7.3 53 2-72 35-92 (286)
377 PF08204 V-set_CD47: CD47 immu 95.1 0.078 1.7E-06 34.0 5.1 74 98-172 24-107 (130)
378 KOG1480|consensus 94.9 0.0041 8.9E-08 50.7 -1.2 74 89-172 132-205 (909)
379 PHA03042 CD47-like protein; Pr 94.9 0.43 9.4E-06 34.5 8.7 61 99-172 29-92 (286)
380 PHA02865 MHC-like TNF binding 94.8 0.16 3.6E-06 38.1 6.8 23 103-125 216-238 (338)
381 PHA03269 envelope glycoprotein 94.8 1.6 3.5E-05 34.5 13.6 60 4-71 348-415 (566)
382 PHA02982 hypothetical protein; 94.5 1.1 2.3E-05 31.3 16.8 118 1-127 42-172 (251)
383 PF07354 Sp38: Zona-pellucida- 94.4 0.065 1.4E-06 38.4 3.8 44 120-171 15-58 (271)
384 PF05790 C2-set: Immunoglobuli 93.8 0.74 1.6E-05 26.9 7.8 21 51-71 44-64 (80)
385 PHA03052 Hypothetical protein; 93.7 0.65 1.4E-05 25.8 6.7 40 93-132 4-44 (69)
386 PF02124 Marek_A: Marek's dise 92.9 2.3 5E-05 29.9 17.5 106 13-129 7-117 (211)
387 PHA02982 hypothetical protein; 91.6 0.54 1.2E-05 32.7 4.7 75 95-172 33-122 (251)
388 PF11465 Receptor_2B4: Natural 91.3 0.82 1.8E-05 28.1 4.8 22 151-172 72-93 (108)
389 KOG4597|consensus 90.3 0.51 1.1E-05 37.0 4.1 72 95-172 205-279 (560)
390 PHA03270 envelope glycoprotein 90.2 7.5 0.00016 30.5 12.8 19 4-22 240-261 (466)
391 PHA02914 Immunoglobulin-like d 89.7 7.5 0.00016 30.2 9.6 121 2-129 283-421 (500)
392 PF06328 Lep_receptor_Ig: Ig-l 88.3 3.8 8.3E-05 24.5 6.4 67 94-168 11-80 (89)
393 PF02480 Herpes_gE: Alphaherpe 87.8 7.1 0.00015 31.1 8.9 78 48-125 87-190 (439)
394 PHA03273 envelope glycoprotein 87.5 13 0.00028 29.6 14.8 60 4-71 256-323 (486)
395 KOG4597|consensus 86.7 1.5 3.3E-05 34.5 4.5 61 3-72 216-279 (560)
396 PHA03189 UL14 tegument protein 85.1 14 0.0003 27.6 10.6 79 95-174 61-157 (348)
397 KOG1480|consensus 84.7 0.36 7.7E-06 40.1 0.5 56 3-72 149-205 (909)
398 PHA02865 MHC-like TNF binding 83.8 3.6 7.9E-05 31.2 5.3 19 2-20 218-238 (338)
399 cd07689 Ig2_VCAM-1 Second immu 83.8 6.3 0.00014 24.1 5.4 20 2-21 19-41 (99)
400 PF05790 C2-set: Immunoglobuli 83.2 7.1 0.00015 22.8 6.7 21 152-172 45-66 (80)
401 PHA03112 IL-18 binding protein 80.0 12 0.00025 24.5 5.9 29 98-126 35-63 (141)
402 PHA03271 envelope glycoprotein 77.3 34 0.00073 27.0 14.9 19 4-22 266-287 (490)
403 cd05890 Ig2_Nectin-1_like Seco 71.4 20 0.00044 21.8 6.1 60 4-72 26-86 (98)
404 PHA03283 envelope glycoprotein 70.2 58 0.0013 26.5 9.2 78 48-125 132-234 (542)
405 PF02124 Marek_A: Marek's dise 69.0 17 0.00037 25.7 5.0 56 114-170 3-60 (211)
406 KOG0613|consensus 67.2 8.5 0.00018 34.4 3.9 119 50-173 278-416 (1205)
407 PF01688 Herpes_gI: Alphaherpe 65.6 22 0.00048 24.0 4.8 25 48-72 122-146 (161)
408 PHA03282 envelope glycoprotein 63.8 24 0.00052 28.2 5.3 31 36-72 116-146 (540)
409 PF15096 G6B: G6B family 62.4 9.2 0.0002 26.2 2.6 27 158-184 82-108 (224)
410 PHA03290 envelope glycoprotein 49.4 58 0.0013 24.9 5.1 26 48-73 127-152 (357)
411 PF05955 Herpes_gp2: Equine he 48.6 87 0.0019 21.5 12.3 78 106-186 112-192 (226)
412 PHA03286 envelope glycoprotein 43.6 1.7E+02 0.0038 23.6 9.6 77 49-125 126-226 (492)
413 KOG0613|consensus 43.2 21 0.00046 32.1 2.5 148 2-166 353-509 (1205)
414 KOG3611|consensus 43.2 59 0.0013 28.1 4.9 23 51-73 613-635 (737)
415 cd05890 Ig2_Nectin-1_like Seco 42.1 81 0.0017 19.3 6.9 61 103-172 22-86 (98)
416 PHA03282 envelope glycoprotein 41.4 59 0.0013 26.2 4.3 25 48-72 331-355 (540)
417 PHA03292 envelope glycoprotein 39.6 91 0.002 24.3 4.9 27 47-73 125-151 (413)
418 PHA02935 Hypothetical protein; 38.4 1.4E+02 0.003 21.0 6.7 22 51-72 103-124 (349)
419 PHA03289 envelope glycoprotein 38.3 91 0.002 23.7 4.7 26 48-73 120-145 (352)
420 KOG1026|consensus 36.7 1.2E+02 0.0025 26.4 5.6 20 2-21 211-230 (774)
421 PF09680 Tiny_TM_bacill: Prote 34.5 40 0.00087 14.5 1.5 8 204-211 16-23 (24)
422 KOG0200|consensus 33.6 2.6E+02 0.0056 23.7 7.3 23 49-71 12-34 (609)
423 PF11049 KSHV_K1: Glycoprotein 30.9 1E+02 0.0023 17.3 5.6 54 105-181 2-55 (71)
424 PF13260 DUF4051: Protein of u 30.6 28 0.0006 17.9 0.8 13 200-212 7-19 (54)
425 PHA03286 envelope glycoprotein 29.0 1.1E+02 0.0025 24.5 4.1 22 51-72 308-329 (492)
426 PF06832 BiPBP_C: Penicillin-B 27.6 1.4E+02 0.003 17.5 9.0 56 103-178 31-86 (89)
427 PHA03291 envelope glycoprotein 27.5 1.2E+02 0.0025 23.6 3.8 26 48-73 127-152 (401)
428 PF02440 Adeno_E3_CR1: Adenovi 26.8 1.2E+02 0.0027 16.8 3.2 15 5-19 8-22 (63)
429 PF11327 DUF3129: Protein of u 24.2 2.2E+02 0.0047 19.9 4.5 27 46-72 89-115 (184)
430 PF02480 Herpes_gE: Alphaherpe 23.5 1.6E+02 0.0034 23.8 4.2 24 49-72 268-291 (439)
431 PHA03281 envelope glycoprotein 21.7 4.9E+02 0.011 21.9 8.6 77 49-125 297-395 (642)
432 KOG3611|consensus 21.0 3.5E+02 0.0075 23.7 5.8 21 152-172 614-634 (737)
433 PHA03283 envelope glycoprotein 20.8 2.2E+02 0.0047 23.6 4.3 25 48-72 313-337 (542)
No 1
>KOG3513|consensus
Probab=99.90 E-value=2e-22 Score=162.49 Aligned_cols=161 Identities=22% Similarity=0.311 Sum_probs=127.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
|.|.|.+.|.|.|+|.|.|.++. ..+ .|.... .....|.|.+++.+|+|.|.|.+.|. +...+.+
T Consensus 259 v~LECfA~G~P~P~i~W~k~~g~-~~~---------~r~~~~----~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~ 324 (1051)
T KOG3513|consen 259 VKLECFALGNPTPQIKWRKVDGK-PPP---------RRATYS----NYGKVLKIPNVQYEDAGEYECIAENSRGSATHSG 324 (1051)
T ss_pred EEEEEEecCCCCCcEEEEeCCCC-CCC---------cceeee----ccccEEEecccCcCCCeEEEEEEecccccceeeE
Confidence 57999999999999999998863 111 122222 13448999999999999999999996 6777888
Q ss_pred EEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 80 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.+.|..+|..+..+.+..+..|+++.+.|.+.+.|.|. +.|.+++.++....... +. .-..+ .|.|++++.
T Consensus 325 ~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~--v~WlkNg~pl~~~~r~~-~~-~i~~g-----~L~is~v~~ 395 (1051)
T KOG3513|consen 325 HVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPT--VKWLKNGEPLEPAERDP-RY-KIDDG-----TLIISNVQE 395 (1051)
T ss_pred EEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCc--eEEeeCCeecCccCCCc-ce-EEeCC-----EEEEEeccc
Confidence 89999999888889999999999999999999998888 99999999986332211 12 22333 399999999
Q ss_pred cCCEEEEEEcccC---CeeEEEEEEeec
Q psy13371 160 KDSGKYSCSPSNA---DVASVYVHVLNG 184 (212)
Q Consensus 160 ~d~g~y~C~~~n~---~~~~~~~~v~~~ 184 (212)
.|+|.|.|.|+|. ...++.+.|+..
T Consensus 396 ~dsg~YQC~A~Nk~G~i~anA~L~V~a~ 423 (1051)
T KOG3513|consen 396 SDSGVYQCIAENKYGTIYANAELKVLAS 423 (1051)
T ss_pred ccCeEEEeeeecccceEeeeeEEEEEcc
Confidence 9999999999998 345566766654
No 2
>KOG3513|consensus
Probab=99.88 E-value=2.6e-21 Score=156.16 Aligned_cols=164 Identities=24% Similarity=0.374 Sum_probs=124.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.+.|++.|.|.|.++|++++. .+.+.. .++|+.+. .+.|+|.+++.+|+|.|.|.+.|. +.....+
T Consensus 349 v~~eC~a~g~P~p~v~WlkNg~-pl~~~~-----r~~~~~i~------~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA 416 (1051)
T KOG3513|consen 349 VTLECKASGKPNPTVKWLKNGE-PLEPAE-----RDPRYKID------DGTLIISNVQESDSGVYQCIAENKYGTIYANA 416 (1051)
T ss_pred eEEEEEecCCCCCceEEeeCCe-ecCccC-----CCcceEEe------CCEEEEEecccccCeEEEeeeecccceEeeee
Confidence 4689999999999999999873 332211 13456664 348999999999999999999997 5667788
Q ss_pred EEEEecc-cceeeCCCce--eeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEee
Q psy13371 80 NLNVVVP-TAEILGSPDL--HVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 80 ~l~v~~~-~~~~~~~~~~--~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 156 (212)
.|+|... |.....+... .+..|..+.+.|...+.|.|. +.|.+.++.+ ..+++..+.++|. |.|.+
T Consensus 417 ~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~--~~W~k~~~~~----~~~~r~~i~edGt-----L~I~n 485 (1051)
T KOG3513|consen 417 ELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPK--VSWLKGGEKL----LQSGRIRILEDGT-----LEISN 485 (1051)
T ss_pred EEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcce--EEEEcCCccc----ccCceEEECCCCc-----EEecc
Confidence 9999876 4444444433 577899999999999888887 9999988843 2445667777776 99999
Q ss_pred eeecCCEEEEEEcccC-CeeEEEEEEeecccC
Q psy13371 157 AELKDSGKYSCSPSNA-DVASVYVHVLNGEYT 187 (212)
Q Consensus 157 ~~~~d~g~y~C~~~n~-~~~~~~~~v~~~~~~ 187 (212)
++.+|+|.|+|.|.|. ........+.....+
T Consensus 486 ~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~t 517 (1051)
T KOG3513|consen 486 VTRSDAGKYTCVAENKLGKAESTGNLIVKDAT 517 (1051)
T ss_pred cCcccCcEEEEEEEcccCccceEEEEEEecCc
Confidence 9999999999999998 333333333333333
No 3
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.83 E-value=4.3e-19 Score=124.50 Aligned_cols=152 Identities=20% Similarity=0.288 Sum_probs=99.2
Q ss_pred CeeEeeeCCCC-----------CceEEEEeeCcceeeeecceeeecCCc---eEEEee-CCCCeEEEEEcccCCCCCEEE
Q psy13371 1 MLHQRKLKGLL-----------PTRVSWIRHRDIHILTVGSYTYTSDQR---FSAIHR-REGDEWTLHIKWAQKRDAGVY 65 (212)
Q Consensus 1 ~~l~C~~~~~p-----------~~~v~W~~~~~~~~~~~~~~~~~~~~r---~~~~~~-~~~~~~~L~i~~~~~~d~G~Y 65 (212)
+.|.|.+.+.| .+.|.|+|.+....... .+.| ..+..+ ....+.+|.|.+++.+|+|.|
T Consensus 40 v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~------~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG~Y 113 (227)
T PHA02826 40 MVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRD------SGARTKIKKITHNEIGDRSENLWIGNVINIDEGIY 113 (227)
T ss_pred EEEEccccccccccccccccCCCccEEEEeCCeEEEEEc------CCCccccccccccceecCCCeEEECCCChHHCEEE
Confidence 47899998744 46999999863111110 1111 000000 112345899999999999999
Q ss_pred EEEecCC-CceeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCC---CCCceEEEEEcCeEEEeeCCCCceeEE
Q psy13371 66 ECQLSTQ-PVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSP---EPPAYIFWYHHDEVISYDSSRGGVSVI 141 (212)
Q Consensus 66 ~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~---~p~~~v~W~~~~~~~~~~~~~~~~~~~ 141 (212)
+|.+.+. +.....+.|.|..+ +....+.+|+.+.|.|.+.+.+ .|.+.+.|+++++++... .+...
T Consensus 114 ~C~a~N~~~~~~~~i~L~V~~~------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~----~r~~~ 183 (227)
T PHA02826 114 ICTISSGNICEESTIRLTFDSG------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYT----DRIQL 183 (227)
T ss_pred EEEEEECCcceEEEEEEEEecC------CccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCC----CCEEE
Confidence 9999985 34455566666432 1234567899999999986432 133459999999987421 12222
Q ss_pred eecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 142 TEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 142 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
...+ ..|.|.+++.+|+|.|+|.+...
T Consensus 184 ~~~~----~~L~I~~V~~~DsG~YtC~a~~~ 210 (227)
T PHA02826 184 RNNN----STLVIKSATHDDSGIYTCNLRFN 210 (227)
T ss_pred eCCC----CEEEECcCCHHhCEEEEEEEEEe
Confidence 2222 24999999999999999999864
No 4
>KOG4194|consensus
Probab=99.82 E-value=1.1e-19 Score=138.41 Aligned_cols=174 Identities=21% Similarity=0.340 Sum_probs=127.5
Q ss_pred eeEeeeCCC--CCceEEEEeeCcceeeee----cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC--C
Q psy13371 2 LHQRKLKGL--LPTRVSWIRHRDIHILTV----GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ--P 73 (212)
Q Consensus 2 ~l~C~~~~~--p~~~v~W~~~~~~~~~~~----~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~ 73 (212)
.++|.+.+. ....+.|.+++. +++. +...+....|...+.+...-...|++.+++..|+|.|.|.+.|. .
T Consensus 522 rftC~a~sssasplsi~WR~dne--vq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~FGS 599 (873)
T KOG4194|consen 522 RFTCNAYSSSASPLSIEWRKDNE--VQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNHFGS 599 (873)
T ss_pred EEEEEeccCCCCCceeEeeeccc--cCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEecccCc
Confidence 589999884 567999999873 2221 11122222333333222223456999999999999999999995 3
Q ss_pred ceeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeE-EEeeCCCCceeEEeecCceEEEEE
Q psy13371 74 VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEV-ISYDSSRGGVSVITEKGEVTTSYL 152 (212)
Q Consensus 74 ~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 152 (212)
..+..+.++|...|.+..+|.+.++..|+.+.|.|.+.|.|.|. +.|-++|.. ++.. .....++..++.. +
T Consensus 600 tysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~Pe--IawqkdggtdFPAA-~eRRl~Vmpedd~-----f 671 (873)
T KOG4194|consen 600 TYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPE--IAWQKDGGTDFPAA-RERRLHVMPEDDV-----F 671 (873)
T ss_pred chhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcc--eeehhcCCCCCchh-hhheeeecCCCCE-----E
Confidence 56778889999999999999999999999999999999999888 999988765 4222 2223334444443 8
Q ss_pred EEeeeeecCCEEEEEEcccC---CeeEEEEEEeecc
Q psy13371 153 LIQQAELKDSGKYSCSPSNA---DVASVYVHVLNGE 185 (212)
Q Consensus 153 ~i~~~~~~d~g~y~C~~~n~---~~~~~~~~v~~~~ 185 (212)
.|.++..+|.|.|+|+|+|. ......+.|++.+
T Consensus 672 ~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p 707 (873)
T KOG4194|consen 672 FITNVKIEDQGIYTCTAQNVAGQISANATLTVLETP 707 (873)
T ss_pred EEecccccccceeEEeeeccccceeeceEEEEecCC
Confidence 89999999999999999997 3455677776653
No 5
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.82 E-value=3.9e-18 Score=126.74 Aligned_cols=160 Identities=21% Similarity=0.322 Sum_probs=105.9
Q ss_pred eeEee-----eCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-Cce
Q psy13371 2 LHQRK-----LKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVR 75 (212)
Q Consensus 2 ~l~C~-----~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~ 75 (212)
.|.|. ..+.|.+.|.|++.+ .+ .+.|+... .+..|.|.+++.+|+|.|+|.+.+. +..
T Consensus 140 ~i~C~~~~~~~~~~~~~~i~W~k~~--~~---------~~~r~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~ 203 (326)
T PHA02785 140 EMVCPNINAFIASNVNADIIWSGHR--RL---------RNKRLKQR-----TPGIITIEDVRKNDAGYYTCVLKYIYGDK 203 (326)
T ss_pred EEECCChhhcccCCCCceEEEccCC--cc---------CCcceEec-----CCCeEEEeecChhhCeEEEEEEEeccCCE
Confidence 47786 346688999998743 21 12344433 2347999999999999999999984 222
Q ss_pred ----eEEEEEEEec--ccceeeCCCceeeeCCCcEEEEeEEeeCCCC-CceEEEEEcCeEEEeeCCC-CceeEEee----
Q psy13371 76 ----SFFVNLNVVV--PTAEILGSPDLHVDEGSTINLTCSIKYSPEP-PAYIFWYHHDEVISYDSSR-GGVSVITE---- 143 (212)
Q Consensus 76 ----~~~~~l~v~~--~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p-~~~v~W~~~~~~~~~~~~~-~~~~~~~~---- 143 (212)
...+.|.|.. .++.+..|....+..|+.++|.|.+.+.|.+ .+.+.|.++|..+...... ..+.....
T Consensus 204 ~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~ 283 (326)
T PHA02785 204 TYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYT 283 (326)
T ss_pred EEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccc
Confidence 2234455543 2333455667778889999999999988754 2359999999877432111 11211111
Q ss_pred --cCceEEEEEEEeeeeecCCEEEEEEcccCCeeEE
Q psy13371 144 --KGEVTTSYLLIQQAELKDSGKYSCSPSNADVASV 177 (212)
Q Consensus 144 --~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~ 177 (212)
........|.|.+++.+|.|.|+|.|.|..+...
T Consensus 284 ~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~ 319 (326)
T PHA02785 284 TDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK 319 (326)
T ss_pred cccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence 1111235699999999999999999999854333
No 6
>KOG4194|consensus
Probab=99.80 E-value=5.7e-19 Score=134.63 Aligned_cols=151 Identities=19% Similarity=0.359 Sum_probs=115.5
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFVN 80 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 80 (212)
.|.|.++|.|.|+|.|.|.++. -.+... ..|..+.+ ++-.+.|.|++.+|+|.|+|.+.+. +..+..++
T Consensus 631 rl~CaAtG~P~PeIawqkdggt-dFPAA~-----eRRl~Vmp----edd~f~Itnvk~eD~GiYtC~A~n~AG~isanAt 700 (873)
T KOG4194|consen 631 RLECAATGHPRPEIAWQKDGGT-DFPAAR-----ERRLHVMP----EDDVFFITNVKIEDQGIYTCTAQNVAGQISANAT 700 (873)
T ss_pred eeeeeccCCCCcceeehhcCCC-CCchhh-----hheeeecC----CCCEEEEecccccccceeEEeeeccccceeeceE
Confidence 5899999999999999998852 233221 23555543 3336778899999999999999985 67888899
Q ss_pred EEEecccceeeCCCceeeeCCCcEEEEeEEeeCCC-CCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 81 LNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPE-PPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 81 l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
|.|.+.|.+..+-.+..+..|+.+.|.|.+.+.|. |. +.|+++++++.... +....+.+. -|.+.+...
T Consensus 701 L~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr--~~W~k~d~pil~t~----rh~f~d~dQ----llvv~~~~~ 770 (873)
T KOG4194|consen 701 LTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPR--LEWFKEDKPILITE----RHTFPDGDQ----LLVVKENLV 770 (873)
T ss_pred EEEecCCcccccccceEEEecceEEEEEecCCCCCCcc--ccccCCCCceEEee----cccCCCCCe----EEEEEehhh
Confidence 99998876666666778999999999999988765 54 99999998875432 122233322 378888889
Q ss_pred cCCEEEEEEcccC
Q psy13371 160 KDSGKYSCSPSNA 172 (212)
Q Consensus 160 ~d~g~y~C~~~n~ 172 (212)
+|+|.|+|...+.
T Consensus 771 ~daG~yTcem~~~ 783 (873)
T KOG4194|consen 771 EDAGIYTCEMSNT 783 (873)
T ss_pred hhcceEEEEEEee
Confidence 9999999999986
No 7
>KOG4221|consensus
Probab=99.79 E-value=1.2e-17 Score=135.54 Aligned_cols=159 Identities=29% Similarity=0.393 Sum_probs=120.1
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--ceeEEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--VRSFFV 79 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~ 79 (212)
.|.|.+.+.|.|.+.|.+++. .++ .++|+... .++.|.|.+++..|.|.|.|.+.++. ..+..+
T Consensus 159 ~f~c~vn~e~~p~i~w~kn~~--pl~-------~~~r~i~l-----psG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a 224 (1381)
T KOG4221|consen 159 LFSCEVNAEPVPTIMWLKNDQ--PLP-------LDSRVIVL-----PSGALEISGLQPSDTGEYRCVVTGGASQRTSNEA 224 (1381)
T ss_pred EEEEEEcCccCceeEEecccc--ccc-------CCCcEEEc-----CCCcEEecccccCCCceEEEEEecCCcCCcccee
Confidence 589999999999999999873 222 13455554 45689999999999999999999863 346677
Q ss_pred EEEEeccc------ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEE
Q psy13371 80 NLNVVVPT------AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153 (212)
Q Consensus 80 ~l~v~~~~------~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 153 (212)
.|+|...+ .++..|....+..|+++.|.|.+.+.|.|. |.|.+++..+..+. .+...... +.|.
T Consensus 225 ~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~--v~Wlrng~~i~~ds---~rivl~g~-----~sll 294 (1381)
T KOG4221|consen 225 ELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPS--VKWLRNGEKISVDS---YRIVLVGG-----SSLL 294 (1381)
T ss_pred EEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCc--eEEeeCCeeeeecc---eEEEEecc-----cceE
Confidence 88887322 134556677889999999999999998888 99999999886443 12222222 2399
Q ss_pred EeeeeecCCEEEEEEcccC---CeeEEEEEEeec
Q psy13371 154 IQQAELKDSGKYSCSPSNA---DVASVYVHVLNG 184 (212)
Q Consensus 154 i~~~~~~d~g~y~C~~~n~---~~~~~~~~v~~~ 184 (212)
|++++..|+|.|+|.|.|. ..+...+.|+..
T Consensus 295 iS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~ 328 (1381)
T KOG4221|consen 295 ISNATDDDSGKYTCRATNTNDSIDASAEVTVLAP 328 (1381)
T ss_pred EeccccccCceEEEEecCCCcccccceEEEEEcC
Confidence 9999999999999999984 445556666544
No 8
>KOG4221|consensus
Probab=99.76 E-value=8e-18 Score=136.56 Aligned_cols=148 Identities=23% Similarity=0.397 Sum_probs=116.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|+|.+.+.|.|.|.|+|++ ..+..++ .|+.+. +..+|.|.+++..|+|.|+|.+.|. ......+
T Consensus 255 v~leCvvs~~p~p~v~Wlrng--~~i~~ds------~rivl~-----g~~slliS~a~~~dSg~YtC~Atn~~D~idasa 321 (1381)
T KOG4221|consen 255 VVLECVVSGVPKPSVKWLRNG--EKISVDS------YRIVLV-----GGSSLLISNATDDDSGKYTCRATNTNDSIDASA 321 (1381)
T ss_pred EEEEEEecCCCCCceEEeeCC--eeeeecc------eEEEEe-----cccceEEeccccccCceEEEEecCCCcccccce
Confidence 479999999999999999976 3333222 244443 4558999999999999999999985 4566778
Q ss_pred EEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 80 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.|+|..+|..+..|......++.++.+.|.+.+.|.|. +.|+++|..+.. +....+...+. |.|.-+..
T Consensus 322 ev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~--v~w~kNgd~~ip----sdy~ki~~~~~-----lrIlgi~~ 390 (1381)
T KOG4221|consen 322 EVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPT--VRWYKNGDRIIP----SDYFKIVGGGN-----LRILGIVK 390 (1381)
T ss_pred EEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcce--EEEEecCcccCc----ccceEecCCCC-----cEEEEEec
Confidence 88999998888888888888999999999998876666 999999987743 22334444443 77777788
Q ss_pred cCCEEEEEEcccC
Q psy13371 160 KDSGKYSCSPSNA 172 (212)
Q Consensus 160 ~d~g~y~C~~~n~ 172 (212)
.|.|.|.|.+.|+
T Consensus 391 sdeg~yQcvaen~ 403 (1381)
T KOG4221|consen 391 SDEGFYQCVAEND 403 (1381)
T ss_pred ccchhhhhhhccC
Confidence 9999999999997
No 9
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.72 E-value=6.3e-16 Score=114.99 Aligned_cols=143 Identities=20% Similarity=0.261 Sum_probs=93.4
Q ss_pred CeeEeee-----CCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-Cc
Q psy13371 1 MLHQRKL-----KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PV 74 (212)
Q Consensus 1 ~~l~C~~-----~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~ 74 (212)
+.|.|.+ .|.|.+.+.|+|++.. . .+.... .....|.|.++..+|+|.|+|.+.|. +.
T Consensus 44 ~~l~C~~~~~~~~g~p~~~i~W~K~g~~--~----------~~~~~~----~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~ 107 (326)
T PHA02785 44 VILPCPQINTLSSGYNILDILWEKRGAD--N----------DRIIPI----DNGSNMLILNPTQSDSGIYICITKNETYC 107 (326)
T ss_pred EEEECCCccccccCCCCceEEEEECCCc--c----------ceEEEc----cCCceEEEcccCcccCeEEEEEEECCCcc
Confidence 4689997 6889999999998631 0 011111 12225778999999999999999986 34
Q ss_pred eeEEEEEEEecccc--eeeCCCceeeeCCCcEEEEeEE-----eeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce
Q psy13371 75 RSFFVNLNVVVPTA--EILGSPDLHVDEGSTINLTCSI-----KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147 (212)
Q Consensus 75 ~~~~~~l~v~~~~~--~~~~~~~~~~~~g~~~~l~C~~-----~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (212)
....+.|+|..... ....+....+.+|..+.+.|.. .+++.| .+.|+++.. + ...+......
T Consensus 108 ~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~--~i~W~k~~~-~-----~~~r~~~~~~--- 176 (326)
T PHA02785 108 DMMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNA--DIIWSGHRR-L-----RNKRLKQRTP--- 176 (326)
T ss_pred eEEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCc--eEEEccCCc-c-----CCcceEecCC---
Confidence 55567777754321 1111222346689999999972 234444 499986542 2 1112222222
Q ss_pred EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 148 TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 148 ~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+.|.|.+++.+|.|.|+|.+.|.
T Consensus 177 --~~L~i~~v~~~d~G~Y~C~~~n~ 199 (326)
T PHA02785 177 --GIITIEDVRKNDAGYYTCVLKYI 199 (326)
T ss_pred --CeEEEeecChhhCeEEEEEEEec
Confidence 24999999999999999999986
No 10
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.68 E-value=2.1e-15 Score=98.91 Aligned_cols=122 Identities=19% Similarity=0.199 Sum_probs=83.0
Q ss_pred EEEEcccCCCCCEEEEEEecCC-CceeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEE
Q psy13371 51 TLHIKWAQKRDAGVYECQLSTQ-PVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVI 129 (212)
Q Consensus 51 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~ 129 (212)
+|+|.+++.+|+|.|.|.+.+. +.....+.|.|..+|.....+.......|+.+.|.|.+.+.+++.+.+.|++++...
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~ 81 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGD 81 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCC
Confidence 7999999999999999999875 456777888888877665555544455788999999999875455679999987542
Q ss_pred Ee-----eCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 130 SY-----DSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 130 ~~-----~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.. ............++.+ ..+.|.+.....++.+.|+|.+.|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~ 130 (139)
T cd05771 82 SPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHV 130 (139)
T ss_pred ccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcC
Confidence 11 0000001122233333 2355776544445566999999886
No 11
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.64 E-value=3.8e-15 Score=86.56 Aligned_cols=74 Identities=23% Similarity=0.409 Sum_probs=55.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.|.|+|++. .+... +.|+.+.. ...+..+|+|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~--~i~~~------~~r~~~~~-~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a 71 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNE--MVQYN------TDRISLYQ-DNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHA 71 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCE--ECcCC------CCeEEEEE-cCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEE
Confidence 5799999999999999999873 22211 24666653 2334468999999999999999999996 5566666
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|.|
T Consensus 72 ~L~V 75 (75)
T cd05892 72 RLDV 75 (75)
T ss_pred EEeC
Confidence 6653
No 12
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.60 E-value=5.4e-14 Score=86.31 Aligned_cols=90 Identities=20% Similarity=0.276 Sum_probs=66.3
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
...+.+..+..|+.+.|.|.+.|.|.|. +.|++++..+... ......... ..+.|.|.++..+|+|.|+|.+
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~~~G~p~p~--v~W~kdg~~l~~~----~~~~~~~~~--~~s~L~I~~~~~~D~G~Ytc~a 75 (98)
T cd05762 4 IQFPEDMKVRAGESVELFCKVTGTQPIT--CTWMKFRKQIQEG----EGIKIENTE--NSSKLTITEGQQEHCGCYTLEV 75 (98)
T ss_pred EECCcCEEEECCCEEEEEEEEcccCCCc--eEEEECCEEecCC----CcEEEEecC--CeeEEEECCCChhhCEEEEEEE
Confidence 4456677899999999999999988777 9999999988421 122222211 1256999999999999999999
Q ss_pred ccC---CeeEEEEEEeecccC
Q psy13371 170 SNA---DVASVYVHVLNGEYT 187 (212)
Q Consensus 170 ~n~---~~~~~~~~v~~~~~~ 187 (212)
.|+ ....+.+.|...+.+
T Consensus 76 ~N~~G~~~~~~~l~V~~~P~p 96 (98)
T cd05762 76 ENKLGSRQAQVNLTVVDKPDP 96 (98)
T ss_pred EcCCCceeEEEEEEEecCCCC
Confidence 998 445566666555443
No 13
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.59 E-value=1.8e-14 Score=83.77 Aligned_cols=74 Identities=23% Similarity=0.308 Sum_probs=54.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.|.|+|++. .+... ..|+.... ...+...|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~--~l~~~------~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a 71 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENE--SLTHN------TDRVSMHQ-DNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTA 71 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCE--ECCCC------CCeEEEEE-cCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEE
Confidence 5799999999999999999873 22211 23555542 2223447999999999999999999996 5556666
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|.|
T Consensus 72 ~L~V 75 (75)
T cd05893 72 RLDV 75 (75)
T ss_pred EEeC
Confidence 6543
No 14
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.57 E-value=1.8e-14 Score=81.47 Aligned_cols=64 Identities=17% Similarity=0.272 Sum_probs=49.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
|.|.|.++|.|.|.+.|+|++. .+.. ......|.|.++..+|+|.|+|.+.|. +..+..+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~--~l~~-----------------~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~ 61 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGK--LISG-----------------KHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRI 61 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCE--ECcc-----------------cCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEE
Confidence 5799999999999999999873 2221 012348999999999999999999986 4455555
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.+++
T Consensus 62 ~~~l 65 (67)
T cd05863 62 SLEL 65 (67)
T ss_pred EEEE
Confidence 5554
No 15
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.56 E-value=7e-14 Score=81.53 Aligned_cols=73 Identities=23% Similarity=0.343 Sum_probs=53.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. . +... ..|+.+.. ...+..+|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~-~-i~~~------~~r~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 71 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNE-M-LTYN------TDRISLYQ-DNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNA 71 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCE-E-CCCC------CCcEEEEE-cCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEE
Confidence 4799999999999999999873 2 2211 23555542 2334567999999999999999999996 5556666
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|.
T Consensus 72 ~l~ 74 (75)
T cd05744 72 RLD 74 (75)
T ss_pred EEe
Confidence 554
No 16
>KOG4222|consensus
Probab=99.56 E-value=2.2e-14 Score=116.38 Aligned_cols=150 Identities=23% Similarity=0.410 Sum_probs=117.2
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFVN 80 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 80 (212)
.+.|.+.|.|.|.+.|.+.++ .++ .+|+.+.. .+.+|.|.+++..|+|.|.|.+.+. +.......
T Consensus 244 ~f~c~v~GdP~P~Vrwkk~~~--~~P--------~~ry~i~~----d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ 309 (1281)
T KOG4222|consen 244 EFDCRVGGDPQPTVRWKKDDP--SLP--------RSRYSILD----DTQTLRIDRVTPTDEGTYVCPAENLVGGLEASAT 309 (1281)
T ss_pred ccccccCCCCCCceeeeccCC--CCC--------ccceeeee----ccccccccccCCCcccceeeeccccccccccccc
Confidence 478999999999999999764 232 34666663 3468999999999999999999986 56777888
Q ss_pred EEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeE-EEe---eCCCCceeEEeecCceEEEEEEEee
Q psy13371 81 LNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEV-ISY---DSSRGGVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 81 l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~l~i~~ 156 (212)
++|..++.+...+.+..+..|..++|.|.+.++|.|. ++|.+.+.. +-. ......+..+...+ .|.|.+
T Consensus 310 ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~Pa--vfW~keg~q~llf~~~p~~~~~r~svs~~g-----~L~it~ 382 (1281)
T KOG4222|consen 310 LTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPA--VFWLKEGSQDLLFSASPPSSNGRGSVSPTG-----TLTITN 382 (1281)
T ss_pred eEEecCcccccccCccccccCceEEeeeecCCCCCcc--eEEeccCcceecccCCCCCcCccceecCCC-----Cccccc
Confidence 9999998887777778888999999999999998888 999987753 211 11122233333333 399999
Q ss_pred eeecCCEEEEEEcccC
Q psy13371 157 AELKDSGKYSCSPSNA 172 (212)
Q Consensus 157 ~~~~d~g~y~C~~~n~ 172 (212)
++..|.|.|.|...+.
T Consensus 383 v~~~d~g~Yvcq~~~~ 398 (1281)
T KOG4222|consen 383 VRQSDEGYYVCQTQTS 398 (1281)
T ss_pred ccccccceEeeccccc
Confidence 9999999999998765
No 17
>KOG4222|consensus
Probab=99.56 E-value=2.3e-14 Score=116.34 Aligned_cols=157 Identities=23% Similarity=0.314 Sum_probs=116.7
Q ss_pred eeEee-eCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC--CceeEE
Q psy13371 2 LHQRK-LKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ--PVRSFF 78 (212)
Q Consensus 2 ~l~C~-~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~~~~~ 78 (212)
.|+|. -.|.|.|.+.|.|++. .+. .+...++.+. ..+.|.|.+++.+|+|.|.|.+.|. ...+..
T Consensus 150 vlEcgpP~ghpeptvSw~Kdg~--pl~-----~~~~~~~~li-----sgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~ 217 (1281)
T KOG4222|consen 150 VLECGPPRGHPEPTVSWVKDGK--PLD-----HYDVPIIALI-----SGGNLLISNVRKSDEGTYACVATNMVGERESIP 217 (1281)
T ss_pred EEeccCCCCCCCCcceeecCCC--ccc-----cccceeEEEe-----cCCcEEEeccccCCCceeeeeeccccccccccc
Confidence 46675 3456889999999884 221 1112233333 3558999999999999999999985 356777
Q ss_pred EEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeee
Q psy13371 79 VNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 79 ~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 158 (212)
.+|+|.+.|.+...+....+..|..+.+.|.+.++|.|. +.|.+.+..+. ..+..+..+.. +|.|.++.
T Consensus 218 A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~--Vrwkk~~~~~P-----~~ry~i~~d~q----tl~i~r~t 286 (1281)
T KOG4222|consen 218 ARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPT--VRWKKDDPSLP-----RSRYSILDDTQ----TLRIDRVT 286 (1281)
T ss_pred ceeeeccCCccccccccceeecccccccccccCCCCCCc--eeeeccCCCCC-----ccceeeeeccc----cccccccC
Confidence 899999999888888889999999999999999988887 89988776552 22333444322 49999999
Q ss_pred ecCCEEEEEEcccC---CeeEEEEEE
Q psy13371 159 LKDSGKYSCSPSNA---DVASVYVHV 181 (212)
Q Consensus 159 ~~d~g~y~C~~~n~---~~~~~~~~v 181 (212)
..|.|.|.|.+.|. ......+.|
T Consensus 287 p~deg~y~C~a~n~vG~l~asa~ltV 312 (1281)
T KOG4222|consen 287 PTDEGTYVCPAENLVGGLEASATLTV 312 (1281)
T ss_pred CCcccceeeeccccccccccccceEE
Confidence 99999999999996 334444444
No 18
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.54 E-value=1.7e-13 Score=83.34 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=60.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+.+.|.|.|.|++++. .++..+......+.|+.+.. ....+.+|.|.+++.+|+|.|+|.+......+..+.
T Consensus 15 v~L~C~v~g~~~~~v~W~k~~~-~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~I~nV~~~D~G~YtC~~~t~~~~~~~~~ 92 (95)
T cd05882 15 VTLKCGVKEHDNSSLQWSNTAQ-QTLYFGEKRALRDNRIQLVK-STPTELIISISNVQLSDEGEYTCSIFTMPVRTAKAT 92 (95)
T ss_pred EEEEEEEeCCCCCeEEEeccCc-cEEEeCCeEEEeCCeEEEEe-CCCceEEEEECCCCcccCEEEEEEEEeeccccEEEE
Confidence 3699999999999999999875 33344444444567887653 344678999999999999999999998655555555
Q ss_pred EE
Q psy13371 81 LN 82 (212)
Q Consensus 81 l~ 82 (212)
|.
T Consensus 93 ~~ 94 (95)
T cd05882 93 VT 94 (95)
T ss_pred EE
Confidence 54
No 19
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.53 E-value=4.1e-14 Score=81.89 Aligned_cols=68 Identities=22% Similarity=0.301 Sum_probs=52.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.|.|+|++. .+. .+.|+.+. .+.+|.|.+++.+|+|.|.|.+.|. +..+..+
T Consensus 4 ~~l~C~~~g~P~p~v~W~k~~~-~l~--------~~~r~~~~-----~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 69 (73)
T cd05852 4 VIIECKPKAAPKPKFSWSKGTE-LLV--------NNSRISIW-----DDGSLEILNITKLDEGSYTCFAENNRGKANSTG 69 (73)
T ss_pred EEEEEecceeCCCEEEEEeCCE-ecc--------cCCCEEEc-----CCCEEEECcCChhHCEEEEEEEECCCCceeEEE
Confidence 4699999999999999999763 222 13466654 3447999999999999999999996 4555555
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|.
T Consensus 70 ~l~ 72 (73)
T cd05852 70 VLS 72 (73)
T ss_pred EEE
Confidence 554
No 20
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.52 E-value=1.6e-13 Score=80.04 Aligned_cols=71 Identities=21% Similarity=0.287 Sum_probs=53.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+. .+.++.+. .......|.|.++..+|+|.|+|.+.|. +..+..+
T Consensus 2 ~~l~c~~~G~P~p~v~W~k~g~--~l~-------~~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 70 (74)
T cd05748 2 VRLEVPISGRPTPTVTWSKDGK--PLK-------LSGRVQIE--TTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATI 70 (74)
T ss_pred EEEEeeEeeeCCCeEEEEECCE--EcC-------CCCeEEEE--ECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEE
Confidence 4699999999999999999873 221 13355554 2345678999999999999999999996 4555555
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|.
T Consensus 71 ~l~ 73 (74)
T cd05748 71 NVK 73 (74)
T ss_pred EEE
Confidence 554
No 21
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.52 E-value=1.9e-13 Score=83.92 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=59.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.++|.|.|.+.|+|++. .+.. +.++.+. .......|.|.++..+|+|.|+|.+.|. +.....+
T Consensus 18 v~l~C~~~G~p~p~v~W~kdg~--~l~~-------~~~~~~~--~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~ 86 (98)
T cd05762 18 VELFCKVTGTQPITCTWMKFRK--QIQE-------GEGIKIE--NTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQV 86 (98)
T ss_pred EEEEEEEcccCCCceEEEECCE--EecC-------CCcEEEE--ecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEE
Confidence 3689999999999999999873 2221 2345544 2345668999999999999999999996 6677788
Q ss_pred EEEEeccc
Q psy13371 80 NLNVVVPT 87 (212)
Q Consensus 80 ~l~v~~~~ 87 (212)
.|.|.+.|
T Consensus 87 ~l~V~~~P 94 (98)
T cd05762 87 NLTVVDKP 94 (98)
T ss_pred EEEEecCC
Confidence 88887755
No 22
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.51 E-value=2.9e-13 Score=81.47 Aligned_cols=74 Identities=24% Similarity=0.344 Sum_probs=56.9
Q ss_pred cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEE
Q psy13371 87 TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166 (212)
Q Consensus 87 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 166 (212)
|.....+.+..+.+|+.+.|.|.+.|.|.|. +.|++++..+.. ... ....+ ..|.|.++..+|.|.|+
T Consensus 2 p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~--v~W~k~~~~~~~----~~~--~~~~~----~~L~I~~v~~~D~G~Y~ 69 (88)
T cd05851 2 ADINVKFKDTYALKGQNVTLECFALGNPVPV--IRWRKILEPMPA----TAE--ISMSG----AVLKIFNIQPEDEGTYE 69 (88)
T ss_pred CceEEccccEEEeCCCcEEEEEEecccCCCE--EEEEECCcCCCC----CCE--EecCC----CEEEECcCChhhCEEEE
Confidence 3445566778899999999999999998887 999999876521 111 11122 24999999999999999
Q ss_pred EEcccC
Q psy13371 167 CSPSNA 172 (212)
Q Consensus 167 C~~~n~ 172 (212)
|.|.|.
T Consensus 70 C~A~N~ 75 (88)
T cd05851 70 CEAENI 75 (88)
T ss_pred EEEEcC
Confidence 999998
No 23
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.51 E-value=1.9e-13 Score=81.83 Aligned_cols=72 Identities=17% Similarity=0.217 Sum_probs=53.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+... ++|+.+. .......|.|.++..+|+|.|+|.+.|. +..+..+
T Consensus 13 v~l~c~~~G~P~P~v~W~k~~~-~i~~~-------~~r~~~~--~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~ 82 (86)
T cd05894 13 LRLDVPISGEPAPTVTWSRGDK-AFTET-------EGRVRVE--SYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASL 82 (86)
T ss_pred EEEEeeEeecCCCeEEEEECCE-ECccC-------CCeEEEE--EcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence 4699999999999999999873 22211 2355554 2334678999999999999999999996 4555555
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|.
T Consensus 83 ~l~ 85 (86)
T cd05894 83 FVK 85 (86)
T ss_pred EEE
Confidence 554
No 24
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.50 E-value=6.9e-13 Score=81.56 Aligned_cols=73 Identities=21% Similarity=0.373 Sum_probs=55.6
Q ss_pred CceeeeCCCcEEEEeEEee-CCCCCceEEEEEcCeEEEeeCCCCceeEEeec---CceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 94 PDLHVDEGSTINLTCSIKY-SPEPPAYIFWYHHDEVISYDSSRGGVSVITEK---GEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
....+.+|+.+.|.|.+.+ .|.|. +.|+++|.++... ........ +....+.|.|.++..+|+|.|+|.|
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~--v~W~Kdg~~i~~~----~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A 84 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPH--INWTYDNRTLTNK----LTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLA 84 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCc--cEEEeCCeeCCCC----cceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEE
Confidence 4567889999999999999 66666 9999999888421 11121111 2234467999999999999999999
Q ss_pred ccC
Q psy13371 170 SNA 172 (212)
Q Consensus 170 ~n~ 172 (212)
.|.
T Consensus 85 ~N~ 87 (101)
T cd04975 85 SNS 87 (101)
T ss_pred ECC
Confidence 998
No 25
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.50 E-value=1.7e-13 Score=78.70 Aligned_cols=67 Identities=21% Similarity=0.287 Sum_probs=50.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|+++ .++ ..++... .+..|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~--~~~--------~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 65 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDG--ELP--------KGRAEIL-----DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASA 65 (69)
T ss_pred CEEEEECccCCCCEEEEEECCc--cCC--------CCcEEEe-----eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEE
Confidence 4799999999999999999863 121 2344443 3347999999999999999999996 4455555
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|.
T Consensus 66 ~l~ 68 (69)
T cd05725 66 SLT 68 (69)
T ss_pred EEE
Confidence 554
No 26
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.50 E-value=1.1e-13 Score=79.87 Aligned_cols=68 Identities=19% Similarity=0.392 Sum_probs=49.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+.+ ..++.+.. +..|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 2 v~l~C~~~G~P~p~v~W~k~g~-~~~~--------~~~~~~~~-----~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~ 67 (71)
T cd05723 2 VIFECEVTGKPTPTVKWVKNGD-MVIP--------SDYFKIVK-----EHNLQVLGLVKSDEGFYQCIAENDVGNVQASA 67 (71)
T ss_pred EEEEEEEEEeCCCEEEEEECCe-ECCC--------CCCEEEEe-----cCCEEEEcCCcccCEEEEEEEEcCCCEEEEEE
Confidence 4699999999999999999874 2222 23444431 235788899999999999999996 4555555
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|.
T Consensus 68 ~L~ 70 (71)
T cd05723 68 QLI 70 (71)
T ss_pred EEE
Confidence 554
No 27
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.48 E-value=3.1e-13 Score=77.97 Aligned_cols=69 Identities=19% Similarity=0.314 Sum_probs=50.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+.. . +.... ..+..|+|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~-~~~~-~--------~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 66 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDG-PLSP-N--------RTKKL----NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHY 66 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCc-CCCC-C--------ceeEE----cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEE
Confidence 5799999999999999999874 2211 1 11111 13458999999999999999999996 4555555
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|.|
T Consensus 67 ~l~V 70 (71)
T cd05876 67 TVTV 70 (71)
T ss_pred EEEE
Confidence 5554
No 28
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.48 E-value=3.7e-13 Score=78.65 Aligned_cols=72 Identities=17% Similarity=0.281 Sum_probs=52.0
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFVN 80 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 80 (212)
.|.|.+.|.|.|.+.|+|++.. ..+.. .+.|+.... ....|.|.+++.+|+|.|.|.+.|. +..+..+.
T Consensus 2 ~l~C~~~G~P~P~v~W~k~~~~-~~~~~-----~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~ 71 (75)
T cd05763 2 RLECAATGHPTPQIAWQKDGGT-DFPAA-----RERRMHVMP----EDDVFFIVDVKIEDTGVYSCTAQNTAGSISANAT 71 (75)
T ss_pred EeEeecccccCCEEEEEeCCCc-cCCcc-----cccceEEec----CCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEE
Confidence 6899999999999999998742 11111 123444431 2347899999999999999999985 55566666
Q ss_pred EEE
Q psy13371 81 LNV 83 (212)
Q Consensus 81 l~v 83 (212)
|.|
T Consensus 72 l~V 74 (75)
T cd05763 72 LTV 74 (75)
T ss_pred EEE
Confidence 665
No 29
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.48 E-value=3.8e-13 Score=77.54 Aligned_cols=68 Identities=19% Similarity=0.328 Sum_probs=49.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
|.|.|.+.|.|.|.+.|+|++. .+... .++.. ...+|.|.++..+|+|.|+|.+.|. +.....+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~--~l~~~-------~~~~~------~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~ 65 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGK--LISEK-------NRTKK------SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRL 65 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCE--ECCCC-------CEEEc------CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEE
Confidence 6799999999999999999773 22211 12211 3358999999999999999999986 3445555
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.+++
T Consensus 66 ~~~~ 69 (71)
T cd04976 66 TFTL 69 (71)
T ss_pred EEEE
Confidence 5544
No 30
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.47 E-value=1.4e-12 Score=78.51 Aligned_cols=78 Identities=23% Similarity=0.376 Sum_probs=55.6
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEe--ecCceEEEEEEEeeeeecCCEEEEEEcccC---Cee
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVIT--EKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVA 175 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~---~~~ 175 (212)
|+.++|.|.+.+.|.|. +.|.+++..+... ..+.... ..+....+.|.|.++..+|+|.|+|.|.|. ...
T Consensus 1 g~~~~l~C~~~g~p~~~--i~W~k~~~~i~~~---~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~ 75 (88)
T cd05735 1 GQKKEMSCTAHGEKPII--VRWEKEDRIINPE---MSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRG 75 (88)
T ss_pred CCeEEEEEEEECCCCCE--EEEeeCCEECCCC---CCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceE
Confidence 68899999999886665 9999999876322 1222222 233444567999999999999999999998 344
Q ss_pred EEEEEEee
Q psy13371 176 SVYVHVLN 183 (212)
Q Consensus 176 ~~~~~v~~ 183 (212)
.+.+.|..
T Consensus 76 ~~~L~V~~ 83 (88)
T cd05735 76 IIQLTVQE 83 (88)
T ss_pred EEEEEEeC
Confidence 45555543
No 31
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.47 E-value=2.3e-13 Score=79.27 Aligned_cols=68 Identities=24% Similarity=0.358 Sum_probs=50.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+.. +.++... .+..|+|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 5 v~l~C~~~g~P~p~i~W~k~g~--~~~~-------~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 70 (74)
T cd05745 5 VDFLCEAQGYPQPVIAWTKGGS--QLSV-------DRRHLVL-----SSGTLRISRVALHDQGQYECQAVNIVGSQRTVA 70 (74)
T ss_pred EEEEeECCEecCCEEEEEECCE--ECCC-------CCCeEEc-----cCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEE
Confidence 3699999999999999999773 2221 2233332 2348999999999999999999996 5555555
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|.
T Consensus 71 ~L~ 73 (74)
T cd05745 71 QLT 73 (74)
T ss_pred EEe
Confidence 554
No 32
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.47 E-value=5e-13 Score=80.92 Aligned_cols=79 Identities=23% Similarity=0.223 Sum_probs=56.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++...... .........|+.+. .+..|+|.+++.+|+|.|+|.+.|. +.....+
T Consensus 4 v~L~C~~~g~P~p~v~W~k~g~~~~~~-~~~~~~~~~r~~v~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 77 (90)
T cd05726 4 VTFQCEATGNPQPAIFWQKEGSQNLLF-SYQPPQSSSRFSVS-----QTGDLTITNVQRSDVGYYICQTLNVAGSILTKA 77 (90)
T ss_pred EEEEEECCccCCCEEEEEeCCCcceee-cccCCCCCCeEEEC-----CCCeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence 469999999999999999976422211 11011124566664 2347999999999999999999995 5667777
Q ss_pred EEEEec
Q psy13371 80 NLNVVV 85 (212)
Q Consensus 80 ~l~v~~ 85 (212)
.|.|..
T Consensus 78 ~l~V~~ 83 (90)
T cd05726 78 YLEVTD 83 (90)
T ss_pred EEEEee
Confidence 787765
No 33
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.47 E-value=2.7e-13 Score=77.81 Aligned_cols=66 Identities=18% Similarity=0.223 Sum_probs=49.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+.. +.++.+. .+..|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~-~~~~--------~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 66 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGV-QVTE--------SGKFHIS-----PEGYLAIRDVGVADQGRYECVARNTIGYASVSM 66 (69)
T ss_pred CEeEecceEeCCCEEEEEECCE-ECCC--------CCCEEEC-----CCCEEEECcCChhhCEEEEEEEECCCCcEEEEE
Confidence 5799999999999999999762 2221 2344443 2347999999999999999999986 4444444
Q ss_pred E
Q psy13371 80 N 80 (212)
Q Consensus 80 ~ 80 (212)
.
T Consensus 67 ~ 67 (69)
T cd05746 67 V 67 (69)
T ss_pred E
Confidence 3
No 34
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.46 E-value=1.8e-12 Score=78.81 Aligned_cols=72 Identities=29% Similarity=0.541 Sum_probs=55.1
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEe-ecCceEEEEEEEeeeeecCCEEEEEEccc
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVIT-EKGEVTTSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
|....+.+|+.+.|.|.+.+.|.|. +.|++++..+... ...... ..+. ...|.|.++..+|+|.|+|.|.|
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~--v~W~k~g~~l~~~----~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N 79 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPE--VSWLKNDQALALS----DHYNVKVEQGK--YASLTIKGVSSEDSGKYGIVVKN 79 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCe--EEEEECCEECccC----CCEEEEEcCCC--EEEEEEccCChhhCEEEEEEEEE
Confidence 3456789999999999999988777 9999999877422 112222 2121 24599999999999999999999
Q ss_pred C
Q psy13371 172 A 172 (212)
Q Consensus 172 ~ 172 (212)
.
T Consensus 80 ~ 80 (92)
T cd05737 80 K 80 (92)
T ss_pred C
Confidence 8
No 35
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.46 E-value=1.4e-12 Score=77.93 Aligned_cols=80 Identities=19% Similarity=0.156 Sum_probs=56.1
Q ss_pred CeeEeeeCCCCCc--eEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeE
Q psy13371 1 MLHQRKLKGLLPT--RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~ 77 (212)
+.|.|.+.|.|.| .+.|+|++. .+.... .+.++.... ......+|.|.+++.+|+|.|+|.+.+. +..+.
T Consensus 3 ~~L~C~a~g~P~p~~~v~W~~~g~--~i~~~~----~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~ 75 (85)
T cd05854 3 LTLQCHASHDPTMDLTFTWSLDDF--PIDLDK----PNGHYRRME-VKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASA 75 (85)
T ss_pred EEEEEEEecCCCCCeEEEEEECCe--EccccC----CCCcEEEEE-ecceEeEEEEccCChhhCeEEEEEEecCCCCEEE
Confidence 4699999999987 589999763 222111 123432221 1224468999999999999999999996 56777
Q ss_pred EEEEEEeccc
Q psy13371 78 FVNLNVVVPT 87 (212)
Q Consensus 78 ~~~l~v~~~~ 87 (212)
.+.|.|..+|
T Consensus 76 ~~~L~V~~~P 85 (85)
T cd05854 76 SATLVVRGPP 85 (85)
T ss_pred EEEEEEECCC
Confidence 8888887654
No 36
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.46 E-value=1.3e-12 Score=78.58 Aligned_cols=79 Identities=19% Similarity=0.263 Sum_probs=57.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeC--CCCeEEEEEcccCCCCCEEEEEEecCC-CceeE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRR--EGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~ 77 (212)
+.|.|.+.|.|.+.+.|+|++. .+... ..|+.+.... ......|.|.++..+|+|.|+|.+.|. +....
T Consensus 4 ~~l~C~~~g~p~~~i~W~k~~~--~i~~~------~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~ 75 (88)
T cd05735 4 KEMSCTAHGEKPIIVRWEKEDR--IINPE------MSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRG 75 (88)
T ss_pred EEEEEEEECCCCCEEEEeeCCE--ECCCC------CCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceE
Confidence 4699999999999999999773 22111 2355544211 112357999999999999999999996 56677
Q ss_pred EEEEEEeccc
Q psy13371 78 FVNLNVVVPT 87 (212)
Q Consensus 78 ~~~l~v~~~~ 87 (212)
.+.|.|..+|
T Consensus 76 ~~~L~V~~~P 85 (88)
T cd05735 76 IIQLTVQEPP 85 (88)
T ss_pred EEEEEEeCCC
Confidence 7888887654
No 37
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.46 E-value=4.4e-13 Score=78.06 Aligned_cols=62 Identities=31% Similarity=0.612 Sum_probs=49.1
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+|+.+.|.|.+.+.|.|. +.|++++..+... ........+ .|.|.++..+|.|.|+|.|.|.
T Consensus 1 eG~~v~l~C~~~g~P~p~--i~W~k~g~~~~~~----~~~~~~~~~-----~L~I~~v~~~D~G~Y~C~A~N~ 62 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPV--IAWTKGGSQLSVD----RRHLVLSSG-----TLRISRVALHDQGQYECQAVNI 62 (74)
T ss_pred CCCeEEEEeECCEecCCE--EEEEECCEECCCC----CCeEEccCC-----eEEEeeCCHHhCEEEEEEEEeC
Confidence 588999999999998887 9999999876321 122222222 4999999999999999999998
No 38
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.46 E-value=6.5e-13 Score=81.80 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=55.4
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeec----CceEEEEEEEeeeeecCCEEEEEEcc
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK----GEVTTSYLLIQQAELKDSGKYSCSPS 170 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~g~y~C~~~ 170 (212)
...+..|+.+.|.|.+.+.|.|. +.|++++.++.... ....... .....++|.|.++..+|+|.|+|.|.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~--v~W~kdg~~l~~~~----~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~ 85 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQ--IRWLKDNRTLIENL----TEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQ 85 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCc--eEEEECCEECcCCc----ceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEE
Confidence 45678899999999999998887 99999999874221 1111111 12233579999999999999999999
Q ss_pred cCC
Q psy13371 171 NAD 173 (212)
Q Consensus 171 n~~ 173 (212)
|+.
T Consensus 86 N~~ 88 (101)
T cd05859 86 NED 88 (101)
T ss_pred cCC
Confidence 983
No 39
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.46 E-value=8e-13 Score=81.32 Aligned_cols=78 Identities=24% Similarity=0.362 Sum_probs=54.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|........... ...++|+.+. ...+..+|+|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 19 v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~--~~~~~r~~v~--~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 94 (98)
T cd05870 19 ATLSCKAEGEPIPEITWKRASDGHTFSEGD--KSPDGRIEVK--GQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSM 94 (98)
T ss_pred EEEEEecccCCCCeEEEEECCCCceeccCC--cCcCceEEEe--ecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEE
Confidence 368999999999999999964322221110 0123567664 2334568999999999999999999996 4455555
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|+
T Consensus 95 ~l~ 97 (98)
T cd05870 95 YLD 97 (98)
T ss_pred EEe
Confidence 554
No 40
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.45 E-value=3.2e-12 Score=77.72 Aligned_cols=80 Identities=23% Similarity=0.478 Sum_probs=60.3
Q ss_pred ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEE
Q psy13371 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 165 (212)
+|..+..|.+..+..|+.+.|.|.+.+.|.|. +.|++++..+.. ..+....... ..+.|.|.++..+|+|.|
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~--v~W~k~g~~l~~----~~~~~~~~~~--~~~~L~i~~~~~~D~G~Y 74 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPT--VTWMREGQIIVS----SQRHQITSTE--YKSTFEISKVQMSDEGNY 74 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCE--EEEEECCEECCC----CCcEEEEEcC--CeeEEEECCCCcccCEeE
Confidence 34455667788899999999999999988776 999999886632 1122222221 124699999999999999
Q ss_pred EEEcccCC
Q psy13371 166 SCSPSNAD 173 (212)
Q Consensus 166 ~C~~~n~~ 173 (212)
+|.|.|..
T Consensus 75 ~C~a~N~~ 82 (92)
T cd05747 75 TVVVENSE 82 (92)
T ss_pred EEEEEcCC
Confidence 99999983
No 41
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.45 E-value=4.6e-13 Score=77.77 Aligned_cols=68 Identities=22% Similarity=0.276 Sum_probs=51.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. . +. .+.|+.+. .+.+|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 4 v~L~C~~~g~P~p~v~W~k~~~-~-~~-------~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~ 69 (73)
T cd04969 4 VIIECKPKAAPKPTISWSKGTE-L-LT-------NSSRICIW-----PDGSLEILNVTKSDEGKYTCFAENFFGKANSTG 69 (73)
T ss_pred EEEEEeeeEcCCCEEEEEECCE-E-cc-------cCCCEEEC-----CCCeEEEccCChhHCEEEEEEEECCCCceEEEE
Confidence 3689999999999999999873 2 21 13455543 2347999999999999999999996 4555555
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|.
T Consensus 70 ~l~ 72 (73)
T cd04969 70 SLS 72 (73)
T ss_pred EEE
Confidence 554
No 42
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.45 E-value=6.3e-13 Score=76.91 Aligned_cols=62 Identities=26% Similarity=0.480 Sum_probs=48.5
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
|+.+.|.|.+.+.|.|. +.|++++..+.. ..+.....++ .|.|.+++.+|.|.|+|.|.|..
T Consensus 1 G~~~~l~C~~~g~P~p~--v~W~k~~~~l~~----~~r~~~~~~g-----~L~I~~v~~~D~G~Y~C~A~N~~ 62 (73)
T cd05852 1 GGRVIIECKPKAAPKPK--FSWSKGTELLVN----NSRISIWDDG-----SLEILNITKLDEGSYTCFAENNR 62 (73)
T ss_pred CCeEEEEEecceeCCCE--EEEEeCCEeccc----CCCEEEcCCC-----EEEECcCChhHCEEEEEEEECCC
Confidence 67899999999988776 999999876631 2233333333 49999999999999999999983
No 43
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.44 E-value=3.4e-12 Score=76.22 Aligned_cols=78 Identities=26% Similarity=0.380 Sum_probs=53.6
Q ss_pred CcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC---CeeEEE
Q psy13371 102 STINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVY 178 (212)
Q Consensus 102 ~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~---~~~~~~ 178 (212)
+.+.|.|.+.+.|.|...+.|++++.++...... ........ ....+.|.|.+++..|+|.|+|.|.|. ...++.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~-~~~~~~~~-~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~ 78 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPN-GHYRRMEV-KETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASAT 78 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCC-CcEEEEEe-cceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEE
Confidence 4689999999999887778999999887433211 11111110 011246999999999999999999998 334444
Q ss_pred EEE
Q psy13371 179 VHV 181 (212)
Q Consensus 179 ~~v 181 (212)
+.|
T Consensus 79 L~V 81 (85)
T cd05854 79 LVV 81 (85)
T ss_pred EEE
Confidence 444
No 44
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.44 E-value=1.4e-12 Score=79.44 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=57.9
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNL 81 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l 81 (212)
.|.|.+++.|.+.|.|++.+. ..+..+......++|+.... ...+..+|+|.+++.+|+|.|+|.+.+....+..+.|
T Consensus 16 ~L~C~~~~~p~~~v~W~~~~~-~~l~~~~~~~~~~~r~~~~~-~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~~~~~~~l 93 (95)
T cd07701 16 NLTCRVDQNDNTSLQWSNPAQ-QTLYFDDKKALRDNRIELVR-ASWHELSISISDVSLSDEGQYTCSLFTMPVKTSKAYL 93 (95)
T ss_pred EEEEEEecCCceEEEEeCCCC-eEEEEcCcccccCCCEEEEE-CCCCcEEEEECcCCcccCEEEEEEeEeecCccEEEEE
Confidence 699999999999999997654 22222222223467888743 3456789999999999999999999986545555555
Q ss_pred EE
Q psy13371 82 NV 83 (212)
Q Consensus 82 ~v 83 (212)
.|
T Consensus 94 ~v 95 (95)
T cd07701 94 TV 95 (95)
T ss_pred EC
Confidence 43
No 45
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.44 E-value=7.3e-13 Score=78.17 Aligned_cols=66 Identities=20% Similarity=0.329 Sum_probs=47.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|.|.|.+.|+|.++.. .+........++|+... .+.+|.|.++..+|+|.|.|.+.|.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~-~~~~~~~~~~~~r~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~ 66 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRG-HPQHTHTCCLAGRIQLL-----SNGSLLIKHVLEEDSGYYLCKVSND 66 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCcc-ccccccccccCCCEEEe-----cCCeEEECcCCcccCEEEEEEEEeC
Confidence 479999999999999999975321 11110011124566554 3468999999999999999999986
No 46
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.44 E-value=1.1e-12 Score=79.71 Aligned_cols=72 Identities=17% Similarity=0.258 Sum_probs=51.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+.. +.++.+.. ......+|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 19 v~L~C~v~G~P~p~v~W~k~g~-~l~~--------~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 88 (92)
T cd05737 19 LNLTCTVFGDPDPEVSWLKNDQ-ALAL--------SDHYNVKV-EQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDV 88 (92)
T ss_pred EEEEEEEEecCCCeEEEEECCE-ECcc--------CCCEEEEE-cCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEE
Confidence 3699999999999999999763 2221 33454442 1234568999999999999999999985 4455554
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.+.
T Consensus 89 ~v~ 91 (92)
T cd05737 89 TVS 91 (92)
T ss_pred EEe
Confidence 443
No 47
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.43 E-value=3.9e-12 Score=76.11 Aligned_cols=72 Identities=24% Similarity=0.402 Sum_probs=55.1
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
...+..|+.+.|.|.+.+.|.|. +.|++++.++... ..+........ .+.|.|.++..+|+|.|+|.|.|..
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~--v~W~k~~~~i~~~---~~r~~~~~~~~--~~~L~I~~~~~~D~G~Y~c~a~N~~ 75 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPT--VTWSRGDKAFTET---EGRVRVESYKD--LSSFVIEGAEREDEGVYTITVTNPV 75 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCe--EEEEECCEECccC---CCeEEEEEcCC--eEEEEECCCccCcCEEEEEEEEeCC
Confidence 45678999999999999998887 9999999877422 11222222211 2469999999999999999999983
No 48
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.43 E-value=1.2e-12 Score=76.80 Aligned_cols=60 Identities=23% Similarity=0.411 Sum_probs=45.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|.|.|.+.|+|++. . +... ..++.+.. ....|.|.++..+|+|.|.|.+.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~-~-l~~~------~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~ 60 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGT-P-LSDG------QGNYSVSS----KERTLTLRSAGPDDSGLYYCCAHNA 60 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCE-E-CCCC------CccEEEeC----CCCEEEEeeCCcccCEEEEEEEEeC
Confidence 5799999999999999999873 2 2211 12333331 2348999999999999999999996
No 49
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.43 E-value=4.7e-12 Score=76.73 Aligned_cols=77 Identities=27% Similarity=0.555 Sum_probs=59.2
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEE
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
....+.+..+.+|+.+.|.|.+.+.|.|. +.|++++..+.. ..+......+ ..+.|.|.++..+|+|.|+|.
T Consensus 3 ~~~~~~~~~v~~G~~~~l~c~~~~~p~~~--v~W~~~~~~l~~----~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~ 74 (90)
T PF07679_consen 3 FTKKPKDVTVKEGESVTLECEVSGNPPPT--VTWYKNGRPLTS----SQRYQIESDG--GSSSLTIKNVTREDAGTYTCV 74 (90)
T ss_dssp EEEESSEEEEETTSEEEEEEEEEESSSSE--EEEEETTEEEES----SSSEEEEEET--TEEEEEESSESGGGSEEEEEE
T ss_pred EEEecCCEEEeCCCEEEEEEEEEeCCCCc--ccccccccceee----eeeeeeeccc--ceeEEccCCCChhhCEEEEEE
Confidence 34455778899999999999999886665 999999988853 2222333332 235699999999999999999
Q ss_pred cccCC
Q psy13371 169 PSNAD 173 (212)
Q Consensus 169 ~~n~~ 173 (212)
+.|..
T Consensus 75 ~~n~~ 79 (90)
T PF07679_consen 75 ASNSS 79 (90)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99983
No 50
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.42 E-value=4e-12 Score=77.52 Aligned_cols=76 Identities=21% Similarity=0.361 Sum_probs=53.9
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCC-CCceEEEEE-cCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPE-PPAYIFWYH-HDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~-p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
.|....+..|+.+.|.|.+.+.|. |. +.|++ ++..+... ..+....... ...++|.|.++..+|+|.|+|.|
T Consensus 6 ~p~~~~v~~G~~v~l~C~v~G~P~~p~--i~W~~~~g~~l~~~---~~r~~v~~~~-~~~~~L~I~~v~~~D~G~YtC~A 79 (96)
T cd05865 6 VPSQGEISVGESKFFLCQVAGEAKDKD--ISWFSPNGEKLTPN---QQRISVVRND-DYSSTLTIYNANIDDAGIYKCVV 79 (96)
T ss_pred eCCccEECCCCeEEEEEEEeCCCCCCE--EEEECCCCcCcccc---CCeEEEEeCC-CCceEEEEeccChhhCEEEEEEE
Confidence 455667889999999999999875 45 99997 66555321 1122221111 12356999999999999999999
Q ss_pred ccCC
Q psy13371 170 SNAD 173 (212)
Q Consensus 170 ~n~~ 173 (212)
.|..
T Consensus 80 ~N~~ 83 (96)
T cd05865 80 SNED 83 (96)
T ss_pred EcCC
Confidence 9973
No 51
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.41 E-value=1.1e-12 Score=75.01 Aligned_cols=67 Identities=19% Similarity=0.297 Sum_probs=47.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
..|.|.+.|.|.|.+.|+|++. . +... .++ . ....|.|.++..+|+|.|+|.+.|. +..+...
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~-~-l~~~-------~~~--~-----~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~ 64 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQ-L-IVLN-------HTF--K-----RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRH 64 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCE-E-CCCC-------CEE--c-----cCCEEEECcCCHHHCEEEEEEEEECCCceeeEE
Confidence 3689999999999999999873 2 2211 111 1 2347999999999999999999996 4344444
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.+++
T Consensus 65 t~~l 68 (70)
T cd05864 65 TFQL 68 (70)
T ss_pred EEEE
Confidence 4433
No 52
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.41 E-value=5.4e-12 Score=77.99 Aligned_cols=86 Identities=20% Similarity=0.356 Sum_probs=56.7
Q ss_pred cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCC-CceeEEeecCceEEEEEEEeeeeecCCEEE
Q psy13371 87 TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSR-GGVSVITEKGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 87 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 165 (212)
|.....+.+..+.+|+.+.|.|.+.+.|.|. +.|++++..+...... .........+......+...+...+|+|.|
T Consensus 2 P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~--i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y 79 (100)
T cd07693 2 PRIVEHPSDLIVSKGDPATLNCKAEGRPTPT--IQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVY 79 (100)
T ss_pred CeEEecCceeEEcCCCeEEEEeeCCcCCCCE--EEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEE
Confidence 4455667778899999999999999987776 9999999877542111 111222233322111122233468999999
Q ss_pred EEEcccCCe
Q psy13371 166 SCSPSNADV 174 (212)
Q Consensus 166 ~C~~~n~~~ 174 (212)
+|.|.|..+
T Consensus 80 ~C~a~N~~G 88 (100)
T cd07693 80 VCVAHNSLG 88 (100)
T ss_pred EEEEEcccc
Confidence 999999843
No 53
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.41 E-value=5.6e-12 Score=75.99 Aligned_cols=72 Identities=22% Similarity=0.375 Sum_probs=54.7
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEE
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
....+.+..+.+|+.+.|.|.+.+.|.|. +.|++++..+... ... .... ..|.|.+++.+|+|.|+|.
T Consensus 4 ~~~~p~~~~~~~g~~v~l~C~~~g~P~p~--v~W~k~~~~~~~~----~~~-~~~~-----~~L~i~~v~~~D~G~Y~C~ 71 (88)
T cd04968 4 IVVFPKDTYALKGQNVTLECFALGNPVPQ--IKWRKVDGSMPSS----AEI-SMSG-----AVLKIPNIQFEDEGTYECE 71 (88)
T ss_pred EEECCCceEEeCCCcEEEEEEeeEeCCCE--EEEEECCCcCCCc----cEE-EEeC-----CEEEECCCCcccCEEEEEE
Confidence 34456677789999999999999987776 9999987654211 111 1122 2499999999999999999
Q ss_pred cccC
Q psy13371 169 PSNA 172 (212)
Q Consensus 169 ~~n~ 172 (212)
|.|.
T Consensus 72 a~N~ 75 (88)
T cd04968 72 AENI 75 (88)
T ss_pred EEEC
Confidence 9998
No 54
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.41 E-value=8.9e-13 Score=79.75 Aligned_cols=77 Identities=16% Similarity=0.205 Sum_probs=50.9
Q ss_pred CeeEeeeCCCCCceEEEEeeC---cceeeeecceeeecCCceEEEee-----CCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHR---DIHILTVGSYTYTSDQRFSAIHR-----REGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~---~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|.|.|.|.|+|++ +..+.+.+ ..+...... .......|+|.+++.+|+|.|+|.+.|.
T Consensus 4 v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 77 (90)
T cd04974 4 VEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDG------LPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNS 77 (90)
T ss_pred EEEEEEEeCCCCCeEEEEEecccCCceeCCCC------CceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecc
Confidence 369999999999999999964 11111111 111111111 1123457999999999999999999996
Q ss_pred -CceeEEEEEEE
Q psy13371 73 -PVRSFFVNLNV 83 (212)
Q Consensus 73 -~~~~~~~~l~v 83 (212)
+.....+.|.|
T Consensus 78 ~G~~~~sa~L~V 89 (90)
T cd04974 78 IGPSHHSAWLTV 89 (90)
T ss_pred cCcccCCEEEEe
Confidence 55566666665
No 55
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.41 E-value=7.5e-12 Score=76.98 Aligned_cols=83 Identities=20% Similarity=0.233 Sum_probs=58.2
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeec--CceEEEEEEEeeeee-cCCEEE
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK--GEVTTSYLLIQQAEL-KDSGKY 165 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~-~d~g~y 165 (212)
.+..+....+.+|+.+.|.|.+.+.|.|. .+.|.+++..+..... .+...... .....+.|.|.++.. +|.|.|
T Consensus 4 ~i~~~~~~~~~~G~~v~L~C~~~g~P~P~-~v~W~~~~~~i~~~~~--~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 4 IITSEATQYAILGDKGRVECFIFSTPPPD-RIVWTWKENELESGSS--GRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred eEcCCCcEEEeCCCcEEEEEEEcccCCCC-EeEEEECCEEccCCCC--CCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 44445566789999999999999887762 3899999987743321 12222221 122335699999998 558999
Q ss_pred EEEcccCCe
Q psy13371 166 SCSPSNADV 174 (212)
Q Consensus 166 ~C~~~n~~~ 174 (212)
+|.|.|..+
T Consensus 81 ~C~A~N~~G 89 (98)
T cd05758 81 NCTAWNSFG 89 (98)
T ss_pred EEEEEcCCC
Confidence 999999843
No 56
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.41 E-value=2e-12 Score=75.23 Aligned_cols=70 Identities=21% Similarity=0.288 Sum_probs=50.2
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--ceeEEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--VRSFFV 79 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~ 79 (212)
.|.|.+.|.|.|.|.|+|++. .+... .+.|+... .+..|.|.+++.+|+|.|.|.+.|.. ..+..+
T Consensus 2 ~l~C~~~G~P~p~v~W~k~~~--~~~~~-----~~~~~~~~-----~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a 69 (74)
T cd05738 2 TMLCAASGNPDPEITWFKDFL--PVDTT-----SNGRIKQL-----RSGALQIENSEESDQGKYECVATNSAGTRYSAPA 69 (74)
T ss_pred EEEEEEeEecCCEEEEEECCE--ECccC-----CCCCEEEc-----CCcEEEECCCChhhCEEEEEEEECCCCceEcccE
Confidence 689999999999999999873 22110 13455443 34479999999999999999999863 234555
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|.|
T Consensus 70 ~l~v 73 (74)
T cd05738 70 NLYV 73 (74)
T ss_pred EEEE
Confidence 5544
No 57
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.41 E-value=1.4e-12 Score=78.09 Aligned_cols=80 Identities=20% Similarity=0.151 Sum_probs=55.3
Q ss_pred CeeEeeeCCCCCc--eEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeE
Q psy13371 1 MLHQRKLKGLLPT--RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~ 77 (212)
+.|.|.+.+.|.| .+.|++++. .+.... .+.++.... ......+|.|.+++.+|+|.|+|.+.|. +..+.
T Consensus 3 ~~L~C~~~g~P~p~i~~~W~~~g~-~i~~~~-----~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~ 75 (85)
T cd04970 3 ITLQCHASHDPTLDLTFTWSFNGV-PIDFDK-----DGGHYRRVG-GKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSA 75 (85)
T ss_pred EEEEEEEecCCCCCeEEEEEECCe-EeeccC-----CCccEEEEe-cccccceEEEccCCHHhCeeeEEEEecCCCcEEE
Confidence 4699999999987 669998763 222111 012222211 1224568999999999999999999985 56677
Q ss_pred EEEEEEeccc
Q psy13371 78 FVNLNVVVPT 87 (212)
Q Consensus 78 ~~~l~v~~~~ 87 (212)
.+.|.|..+|
T Consensus 76 ~~~l~V~~pP 85 (85)
T cd04970 76 SADLIVRGPP 85 (85)
T ss_pred EEEEEEECCC
Confidence 7888887654
No 58
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.40 E-value=8.3e-12 Score=75.76 Aligned_cols=82 Identities=34% Similarity=0.545 Sum_probs=59.1
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|....+.+|+.+.|.|.+.+.|.|. +.|++++..+... .........+. .+.|.|.++..+|+|.|+|.|.|.
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~--i~W~k~~~~~~~~---~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~N~ 80 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPE--VIWFKNDQDIELS---EHYSVKLEQGK--YASLTIKGVTSEDSGKYSINVKNK 80 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCe--EEEEECCEECCCC---CCEEEEEcCCC--EEEEEECCCChhhCEEEEEEEEeC
Confidence 4567889999999999999887776 9999998876321 11111112222 245999999999999999999998
Q ss_pred -CeeEEEEEE
Q psy13371 173 -DVASVYVHV 181 (212)
Q Consensus 173 -~~~~~~~~v 181 (212)
....+.+.|
T Consensus 81 ~G~~~~~~~v 90 (92)
T cd05891 81 YGGETVDVTV 90 (92)
T ss_pred CCceeeEEEE
Confidence 444455544
No 59
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.40 E-value=4e-12 Score=75.29 Aligned_cols=79 Identities=22% Similarity=0.371 Sum_probs=54.5
Q ss_pred CcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC---CeeEEE
Q psy13371 102 STINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVY 178 (212)
Q Consensus 102 ~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~---~~~~~~ 178 (212)
+.+.|.|.+.+++.+...+.|+++++++..... ..++... .+....+.|.|.+++..|+|.|+|.|+|. ...+..
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~-~~~~~~~-~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~ 78 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKD-GDHFERV-GGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAAD 78 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCC-CccEEEe-ccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEE
Confidence 468999999887777777999999998853321 1222221 11111134999999999999999999997 445555
Q ss_pred EEEe
Q psy13371 179 VHVL 182 (212)
Q Consensus 179 ~~v~ 182 (212)
+.|.
T Consensus 79 L~V~ 82 (85)
T cd05853 79 LIVR 82 (85)
T ss_pred EEEe
Confidence 5543
No 60
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.40 E-value=4.6e-12 Score=77.28 Aligned_cols=75 Identities=24% Similarity=0.370 Sum_probs=52.1
Q ss_pred CeeEeeeCCCCC-ceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC--CceeE
Q psy13371 1 MLHQRKLKGLLP-TRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ--PVRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~~~~ 77 (212)
+.|.|.+.|.|. |.+.|+++++..+... +.|+.+.. ......+|+|.+++.+|+|.|+|.+.|. +..+.
T Consensus 18 v~l~C~v~G~P~~p~i~W~~~~g~~l~~~-------~~r~~v~~-~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~ 89 (96)
T cd05865 18 KFFLCQVAGEAKDKDISWFSPNGEKLTPN-------QQRISVVR-NDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEA 89 (96)
T ss_pred EEEEEEEeCCCCCCEEEEECCCCcCcccc-------CCeEEEEe-CCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEE
Confidence 368999999995 7999998544222221 22444432 2233568999999999999999999995 44555
Q ss_pred EEEEEE
Q psy13371 78 FVNLNV 83 (212)
Q Consensus 78 ~~~l~v 83 (212)
.+.|.|
T Consensus 90 s~~l~v 95 (96)
T cd05865 90 TVNVKI 95 (96)
T ss_pred EEEEEE
Confidence 555554
No 61
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.40 E-value=9.1e-12 Score=76.62 Aligned_cols=80 Identities=25% Similarity=0.405 Sum_probs=55.5
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEEeeC-CCCceeEEeecCceEEEEEEEeeeeecCCEEEE
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVISYDS-SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 166 (212)
+..+.+..+.+|+.++|.|.+.+.|.|. +.|++. +..+.... ....+....... ....|.|.+++.+|+|.|+
T Consensus 5 i~~~~~~~~~~G~~v~l~C~~~G~P~p~--i~W~k~~~g~~~~~~~~~~~~r~~v~~~~--~~~~L~I~~v~~~D~G~Y~ 80 (98)
T cd05870 5 IIQLKNETTVENGAATLSCKAEGEPIPE--ITWKRASDGHTFSEGDKSPDGRIEVKGQH--GESSLHIKDVKLSDSGRYD 80 (98)
T ss_pred EEeeccEEEcCCCcEEEEEecccCCCCe--EEEEECCCCceeccCCcCcCceEEEeecC--CeeEEEEeeCCcCCCEEEE
Confidence 3445678899999999999999988777 999985 33332111 111222222211 1245999999999999999
Q ss_pred EEcccCC
Q psy13371 167 CSPSNAD 173 (212)
Q Consensus 167 C~~~n~~ 173 (212)
|.|.|..
T Consensus 81 C~A~N~~ 87 (98)
T cd05870 81 CEAASRI 87 (98)
T ss_pred EEEeccC
Confidence 9999983
No 62
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.40 E-value=1.9e-12 Score=75.81 Aligned_cols=71 Identities=17% Similarity=0.243 Sum_probs=50.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+.... ..+++.. .+..|.|.+++.+|+|.|.|.+.|. +.....+
T Consensus 4 v~l~C~~~G~P~p~i~W~k~g~-~i~~~~-----~~~~~~~------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 71 (76)
T cd05867 4 ARLDCQVEGIPTPNITWSINGA-PIEGTD-----PDPRRHV------SSGALILTDVQPSDTAVYQCEARNRHGNLLANA 71 (76)
T ss_pred EEEEEEeeEeCCCeEEEEECCE-ECCCCC-----CCceEEe------eCCEEEECCCChhhCEEEEEEEECCCCeEEEEE
Confidence 4699999999999999999773 222111 0123333 2347999999999999999999995 5555556
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|.|
T Consensus 72 ~l~V 75 (76)
T cd05867 72 HVHV 75 (76)
T ss_pred EEEE
Confidence 6554
No 63
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.40 E-value=3.2e-12 Score=74.84 Aligned_cols=63 Identities=22% Similarity=0.425 Sum_probs=48.1
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|+.+.|.|.+.+.|.|. +.|++++.++...... .+.. ... ..|.|.+++.+|+|.|+|.|.|.
T Consensus 1 G~~v~l~C~~~G~P~p~--i~W~k~g~~i~~~~~~-~~~~-~~~-----~~L~I~~~~~~D~G~Y~C~a~N~ 63 (76)
T cd05867 1 GETARLDCQVEGIPTPN--ITWSINGAPIEGTDPD-PRRH-VSS-----GALILTDVQPSDTAVYQCEARNR 63 (76)
T ss_pred CCeEEEEEEeeEeCCCe--EEEEECCEECCCCCCC-ceEE-eeC-----CEEEECCCChhhCEEEEEEEECC
Confidence 67899999999998776 9999999877432111 1111 122 24999999999999999999997
No 64
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.40 E-value=1.8e-12 Score=79.86 Aligned_cols=79 Identities=15% Similarity=0.286 Sum_probs=51.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+.......... ..... .......|+|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 21 ~~l~~~v~g~P~P~v~W~kdg~--~l~~~~~~~~~~-~~~~~--~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~ 95 (101)
T cd05859 21 KEFVVEVEAYPPPQIRWLKDNR--TLIENLTEITTS-EHNVQ--ETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYTF 95 (101)
T ss_pred EEEEEEEEEeCCCceEEEECCE--ECcCCcceEEec-ccccc--ceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEEEE
Confidence 3689999999999999999883 322211100000 00000 0112357999999999999999999996 4566666
Q ss_pred EEEEe
Q psy13371 80 NLNVV 84 (212)
Q Consensus 80 ~l~v~ 84 (212)
.|.|.
T Consensus 96 ~l~V~ 100 (101)
T cd05859 96 ALQIQ 100 (101)
T ss_pred EEEEE
Confidence 66654
No 65
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.39 E-value=7.4e-12 Score=76.80 Aligned_cols=78 Identities=27% Similarity=0.409 Sum_probs=55.8
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCC-CCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSS-RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
..+.+..+.+|+.+.|.|.+.+.|.|. +.|++++..+..... ...+..... ....+.|.|.+++.+|+|.|+|.|
T Consensus 6 ~~~~~~~~~~g~~v~l~C~~~g~p~p~--v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a 81 (96)
T cd05732 6 TYLENQTAVELEQITLTCEAEGDPIPE--ITWRRATRNFSEGDKSLDGRIVVRG--HARVSSLTLKDVQLTDAGRYDCEA 81 (96)
T ss_pred eecCceeEecCCcEEEEEEEeEcCCCc--EEEEECCcccCCCCccccceEEEeC--CccEEEEEECcCCcCcCEEeEEEE
Confidence 344567789999999999999987777 999998865432110 111222211 112356999999999999999999
Q ss_pred ccC
Q psy13371 170 SNA 172 (212)
Q Consensus 170 ~n~ 172 (212)
.|.
T Consensus 82 ~N~ 84 (96)
T cd05732 82 SNR 84 (96)
T ss_pred EeC
Confidence 998
No 66
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.39 E-value=3.1e-12 Score=74.77 Aligned_cols=63 Identities=24% Similarity=0.461 Sum_probs=48.0
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|+.+.|.|.+.+.|.|. +.|+++++++...... .... .++ ..|.|.+++.+|.|.|+|.|.|.
T Consensus 1 g~~~~l~C~a~G~P~P~--i~W~k~g~~i~~~~~~--~~~~-~~~----~~l~i~~v~~~D~G~Y~C~A~N~ 63 (76)
T cd05868 1 GEDGTLICRANGNPKPS--ISWLTNGVPIEIAPTD--PSRK-VDG----DTIIFSKVQERSSAVYQCNASNE 63 (76)
T ss_pred CCCEEEEEEeeEeCCCe--EEEEECCEEccccCCC--ceEE-ecC----CEEEECCCCHhhCEEEEEEEEcC
Confidence 67899999999998887 9999999887432111 1111 122 24889999999999999999998
No 67
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.39 E-value=2.2e-12 Score=72.94 Aligned_cols=53 Identities=23% Similarity=0.416 Sum_probs=43.8
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
++|.|.+.+.|.|. +.|+++|.++.... . .+.|.|.++..+|+|.|+|.|.|+
T Consensus 1 ~~l~c~v~g~P~P~--v~W~kdg~~l~~~~----------~----~~~L~i~~v~~~D~G~YtC~a~N~ 53 (67)
T cd05863 1 VKLPVKVAAYPPPE--FQWYKDGKLISGKH----------S----QHSLQIKDVTEASAGTYTLVLWNS 53 (67)
T ss_pred CEEEEEEEEeCCCE--EEEEECCEECcccC----------C----cCEEEECCCCHHHCEEEEEEEEEC
Confidence 47899999998887 99999998874110 0 135999999999999999999998
No 68
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.39 E-value=9.8e-12 Score=76.32 Aligned_cols=76 Identities=26% Similarity=0.437 Sum_probs=52.4
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCC-CCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSS-RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.......|+.++|.|.+.+.|.|. +.|++++..+..... ...+....... ..+.|.|.++..+|+|.|+|.|.|.
T Consensus 10 ~~~~~~~g~~v~l~C~~~G~P~P~--v~W~~~~~~~~~~~~~~~~~~~v~~~~--~~~~L~I~~v~~~D~G~Y~C~A~N~ 85 (97)
T cd05869 10 NQTAMELEEQITLTCEASGDPIPS--ITWRTSTRNISSEEKTLDGHIVVRSHA--RVSSLTLKYIQYTDAGEYLCTASNT 85 (97)
T ss_pred CceEEEcCCCEEEEEEeeEeCCCE--EEEEECCccccCCccccCccEEEEcCc--cEEEEEEecCccCcCEEEEEEEecC
Confidence 333455589999999999987776 999998876532111 11112222211 2256999999999999999999998
Q ss_pred C
Q psy13371 173 D 173 (212)
Q Consensus 173 ~ 173 (212)
.
T Consensus 86 ~ 86 (97)
T cd05869 86 I 86 (97)
T ss_pred C
Confidence 3
No 69
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.39 E-value=5.4e-12 Score=73.88 Aligned_cols=66 Identities=29% Similarity=0.510 Sum_probs=51.5
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEE
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
....|+...+.+|+.++|.|.+.+.|.+. .+.|++++..+... . ..|.|.++ .+|+|.|+|.
T Consensus 3 v~~~P~~~~v~~G~~V~L~C~~~~~p~~~-~~~W~kng~~l~~~-----------~-----~~l~i~~~-~~dsG~Y~C~ 64 (78)
T cd05752 3 VSLDPPWTTIFQGEKVTLTCNGFNSPEQN-STQWYHNGKLLETT-----------T-----NSYRIRAA-NNDSGEYRCQ 64 (78)
T ss_pred EEeCCCCeEeeCCCCEEEEEeCCCCCCCc-cEEEEECCEEeecc-----------C-----CeEEEeec-ccCCEEeEEE
Confidence 34556777899999999999998775432 38999999876211 1 23889888 9999999999
Q ss_pred cccC
Q psy13371 169 PSNA 172 (212)
Q Consensus 169 ~~n~ 172 (212)
|.|.
T Consensus 65 a~~~ 68 (78)
T cd05752 65 TQGS 68 (78)
T ss_pred CCCC
Confidence 9886
No 70
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.39 E-value=1.6e-12 Score=75.06 Aligned_cols=69 Identities=25% Similarity=0.364 Sum_probs=49.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. . +.. .+.... .....|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~-~-~~~--------~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~ 66 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGG-E-LPA--------DRTKFE----NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTI 66 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCe-E-CCC--------CceeEe----cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEE
Confidence 4799999999999999999873 2 211 111111 13447999999999999999999996 4455555
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|.|
T Consensus 67 ~l~V 70 (71)
T cd05731 67 SVTV 70 (71)
T ss_pred EEEE
Confidence 5544
No 71
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.39 E-value=4.6e-12 Score=75.79 Aligned_cols=71 Identities=27% Similarity=0.450 Sum_probs=55.4
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcc
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 170 (212)
..|.+..+..|+.+.|.|.+.+.|.|. +.|++++..+.. ..+.. ...+ .|.|.++..+|+|.|+|.|.
T Consensus 4 ~~p~~~~~~~G~~~~l~C~~~g~p~p~--v~W~k~g~~~~~----~~~~~-~~~~-----~L~i~~~~~~D~G~Y~C~a~ 71 (85)
T cd05728 4 KVISDTEADIGSSLRWECKASGNPRPA--YRWLKNGQPLAS----ENRIE-VEAG-----DLRITKLSLSDSGMYQCVAE 71 (85)
T ss_pred ccCCccEEcCCCcEEEEEEeeEeCCCE--EEEEECCEECCC----CCeEE-EeCC-----EEEEeeCCHHHCEEEEEEEE
Confidence 345667889999999999999988776 999999987632 11222 2222 49999999999999999999
Q ss_pred cCC
Q psy13371 171 NAD 173 (212)
Q Consensus 171 n~~ 173 (212)
|+.
T Consensus 72 N~~ 74 (85)
T cd05728 72 NKH 74 (85)
T ss_pred CCC
Confidence 983
No 72
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.38 E-value=4.7e-12 Score=77.72 Aligned_cols=76 Identities=21% Similarity=0.235 Sum_probs=52.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|++++. .+..... ..++|+.+. .......|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 20 v~l~C~~~G~P~P~v~W~~~~~-~~~~~~~---~~~~~~~v~--~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 93 (97)
T cd05869 20 ITLTCEASGDPIPSITWRTSTR-NISSEEK---TLDGHIVVR--SHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSM 93 (97)
T ss_pred EEEEEEeeEeCCCEEEEEECCc-cccCCcc---ccCccEEEE--cCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEE
Confidence 3689999999999999999763 2211110 123455443 2233468999999999999999999996 5555555
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|.
T Consensus 94 ~l~ 96 (97)
T cd05869 94 YLE 96 (97)
T ss_pred EEE
Confidence 554
No 73
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.38 E-value=3.1e-12 Score=75.27 Aligned_cols=61 Identities=23% Similarity=0.370 Sum_probs=47.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|.|.|.+.|++++. .+. .+.|+.+. ...+...|+|.+++.+|+|.|+|.+.|.
T Consensus 4 v~l~C~~~g~P~p~v~W~~~~~-~~~--------~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 64 (78)
T cd05743 4 VEFTCVATGVPTPIINWRLNWG-HVP--------DSARVSIT--SEGGYGTLTIRDVKESDQGAYTCEAINT 64 (78)
T ss_pred EEEEEEEEEecCCEEEEEECCe-ECC--------CCCCEEEE--ECCCEEEEEECCCChHHCEEEEEEEEec
Confidence 3689999999999999998763 221 13455554 2335678999999999999999999985
No 74
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.38 E-value=1.8e-11 Score=74.11 Aligned_cols=73 Identities=18% Similarity=0.302 Sum_probs=54.5
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|.+..+.+|+.+.|.|.+.+.|.|. +.|++++..+.... ...... ....+.|.|.++..+|.|.|+|.|.|.
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~P~p~--v~W~~~g~~~~~~~----~~~~~~--~~~~~~L~I~~v~~~D~g~Y~C~A~N~ 78 (90)
T cd04972 7 PNATVVYEGGTATIRCTAEGSPLPK--VEWIIAGLIVIQTR----TDTLET--TVDIYNLQLSNITSETQTTVTCTAENP 78 (90)
T ss_pred CcCEEEcCCCcEEEEEEEEEcCCCe--EEEEECCEEccCCc----cEEEEe--cCCEEEEEEecCCcccCEEEEEEEECC
Confidence 4455688999999999999988777 99999998763211 111111 112346999999999999999999998
Q ss_pred C
Q psy13371 173 D 173 (212)
Q Consensus 173 ~ 173 (212)
.
T Consensus 79 ~ 79 (90)
T cd04972 79 V 79 (90)
T ss_pred C
Confidence 4
No 75
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.38 E-value=5.1e-12 Score=73.77 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=47.8
Q ss_pred eEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEE--E-eeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEE
Q psy13371 3 HQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSA--I-HRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFF 78 (212)
Q Consensus 3 l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~--~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~ 78 (212)
++|.+.|.|.|.|.|+|++ ..+..+ .++.. . .........|.|.++..+|+|.|+|.+.|. +.....
T Consensus 3 i~~~v~G~P~Pti~W~kng--~~l~~~-------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~ 73 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEG--AILNES-------EYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKN 73 (79)
T ss_pred EEEEEeEeCCCceEEEECC--EECCCC-------cceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceE
Confidence 7899999999999999988 333321 12111 0 011223468999999999999999999996 444444
Q ss_pred EE
Q psy13371 79 VN 80 (212)
Q Consensus 79 ~~ 80 (212)
+.
T Consensus 74 ~~ 75 (79)
T cd05855 74 VS 75 (79)
T ss_pred EE
Confidence 43
No 76
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.38 E-value=9.4e-12 Score=76.15 Aligned_cols=78 Identities=24% Similarity=0.445 Sum_probs=57.1
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC-
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD- 173 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~- 173 (212)
+..+..|+.+.|.|.+.+.|.|. +.|++++..+... .........+ +.|.|.++..+|.|.|+|.|.|..
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~--v~W~k~g~~~~~~---~~~~~~~~~~----~~L~I~~v~~~D~G~Y~C~a~N~~G 82 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPT--MTWTKDGEPIESG---EEKYSFNEDG----SEMTILDVDKLDEAEYTCIAENKAG 82 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCE--EEEEECCEECcCC---CCEEEEeCCC----CEEEECCCChhhCEEEEEEEEcCCC
Confidence 45688999999999999987777 9999999876422 1122222222 359999999999999999999983
Q ss_pred --eeEEEEEE
Q psy13371 174 --VASVYVHV 181 (212)
Q Consensus 174 --~~~~~~~v 181 (212)
..++.+.|
T Consensus 83 ~~~~~~~L~V 92 (95)
T cd05730 83 EQEAEIHLKV 92 (95)
T ss_pred eEEEEEEEEE
Confidence 34444444
No 77
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.38 E-value=5.8e-12 Score=74.33 Aligned_cols=69 Identities=12% Similarity=0.093 Sum_probs=47.3
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEE-ee----CCCCeEEEEEcccCCCCCEEEEEEecCC-Cce
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAI-HR----REGDEWTLHIKWAQKRDAGVYECQLSTQ-PVR 75 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~-~~----~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~ 75 (212)
.|.|.+.|.|.|.++|+|++. .+.+ . .+.... .. .....+.|+|.+++.+|+|.|+|.+.|. +..
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~-~i~~-~-------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~ 72 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGA-VLNE-S-------DYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQD 72 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCE-ECcC-C-------CceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCe
Confidence 478999999999999999773 2222 1 111111 00 1223567999999999999999999996 434
Q ss_pred eEEE
Q psy13371 76 SFFV 79 (212)
Q Consensus 76 ~~~~ 79 (212)
+..+
T Consensus 73 ~~~~ 76 (81)
T cd04971 73 SKSI 76 (81)
T ss_pred eeEE
Confidence 4433
No 78
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.38 E-value=4.7e-12 Score=77.87 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=52.2
Q ss_pred CeeEeeeCC-CCCceEEEEeeCcceeeeecceeeecCCceEEEeeC---CCCeEEEEEcccCCCCCEEEEEEecCC-Cce
Q psy13371 1 MLHQRKLKG-LLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRR---EGDEWTLHIKWAQKRDAGVYECQLSTQ-PVR 75 (212)
Q Consensus 1 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~ 75 (212)
+.|.|.+.| .|.|.+.|+|++. .+... .++...... ......|+|..++.+|+|.|+|.+.|. +..
T Consensus 21 v~L~c~v~g~~P~p~v~W~Kdg~--~i~~~-------~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~ 91 (101)
T cd04975 21 LNLVVEVEAYPPPPHINWTYDNR--TLTNK-------LTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91 (101)
T ss_pred EEEEEEEEecCCCCccEEEeCCe--eCCCC-------cceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence 479999999 8999999999873 33211 111111100 012357999999999999999999996 556
Q ss_pred eEEEEEEEe
Q psy13371 76 SFFVNLNVV 84 (212)
Q Consensus 76 ~~~~~l~v~ 84 (212)
+..+.|.|.
T Consensus 92 ~~t~~L~V~ 100 (101)
T cd04975 92 SLTFELYVN 100 (101)
T ss_pred EEEEEEEEE
Confidence 666666664
No 79
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.38 E-value=5.1e-12 Score=73.40 Aligned_cols=65 Identities=29% Similarity=0.574 Sum_probs=47.6
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCCe
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADV 174 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~ 174 (212)
+.|.|.+.+.|.|. +.|+++++.+.... .+.....++. ...+|.|.++..+|+|.|+|.|.|..+
T Consensus 1 v~l~C~v~G~P~P~--i~W~k~~~~i~~~~---~r~~~~~~~~-g~~~L~I~~~~~~D~G~Y~C~A~N~~G 65 (75)
T cd05892 1 VKLECQISAIPPPK--IFWKRNNEMVQYNT---DRISLYQDNS-GRVTLLIKNVNKKDAGWYTVSAVNEAG 65 (75)
T ss_pred CEEEEEEEecCCCe--EEEEECCEECcCCC---CeEEEEEcCC-CcEEEEECCCChhhCEEEEEEEEcCcC
Confidence 47999999998887 99999998874221 2333322211 113599999999999999999999843
No 80
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.37 E-value=7.2e-12 Score=72.24 Aligned_cols=60 Identities=18% Similarity=0.397 Sum_probs=45.7
Q ss_pred cEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 103 TINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 103 ~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
++.|.|.+.|.|.|. +.|++++..+.. ........++. |.|.++..+|+|.|+|.|.|..
T Consensus 1 ~v~l~C~~~G~P~p~--v~W~k~g~~~~~----~~~~~~~~~~~-----l~i~~v~~~D~G~Y~C~A~N~~ 60 (71)
T cd05723 1 DVIFECEVTGKPTPT--VKWVKNGDMVIP----SDYFKIVKEHN-----LQVLGLVKSDEGFYQCIAENDV 60 (71)
T ss_pred CEEEEEEEEEeCCCE--EEEEECCeECCC----CCCEEEEecCC-----EEEEcCCcccCEEEEEEEEcCC
Confidence 478999999998777 999999987632 11222223333 7888999999999999999983
No 81
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.37 E-value=1.5e-11 Score=73.62 Aligned_cols=69 Identities=26% Similarity=0.508 Sum_probs=48.8
Q ss_pred CcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 102 STINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 102 ~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+.+.|.|.+.+.|.|...+.|++++..+............... ...+.|.|.+++..|+|.|+|.|.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~n~ 69 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGK--DSNGDLMIRNAQLKHAGKYTCTAQTV 69 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecc--cccceEEEccCCHHhCeeeEEEEecC
Confidence 4689999999998886568999999887543221111011100 01235999999999999999999997
No 82
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.37 E-value=4.1e-12 Score=74.00 Aligned_cols=69 Identities=23% Similarity=0.278 Sum_probs=48.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+++++..+.. ..++... .+.+|.|.++..+|+|.|+|.+.|. +..+..+
T Consensus 4 ~~l~C~~~g~P~p~v~W~~~~~~~~~~--------~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 70 (74)
T cd05764 4 ATLRCKARGDPEPAIHWISPDGKLISN--------SSRTLVY-----DNGTLDILITTVKDTGSFTCIASNAAGEATATV 70 (74)
T ss_pred EEEEEEccCcCCCEEEEEeCCCEEecC--------CCeEEEe-----cCCEEEEEECChhhCEEEEEEEECCCCeEEEEE
Confidence 368999999999999999865422221 1233222 2347999999999999999999996 4445555
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|.
T Consensus 71 ~l~ 73 (74)
T cd05764 71 ELH 73 (74)
T ss_pred EEE
Confidence 443
No 83
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.37 E-value=5.2e-12 Score=75.99 Aligned_cols=68 Identities=18% Similarity=0.192 Sum_probs=50.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+.. +.++.. .+..|.|.+++.+|+|.|+|.+.|. +.....+
T Consensus 19 v~l~C~~~G~P~P~v~W~k~~~--~~~~-------~~~~~~------~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 83 (88)
T cd05851 19 VTLECFALGNPVPVIRWRKILE--PMPA-------TAEISM------SGAVLKIFNIQPEDEGTYECEAENIKGKDKHQA 83 (88)
T ss_pred EEEEEEecccCCCEEEEEECCc--CCCC-------CCEEec------CCCEEEECcCChhhCEEEEEEEEcCCCceEEEE
Confidence 3699999999999999999873 2211 112211 2347999999999999999999996 5566666
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|.|
T Consensus 84 ~l~V 87 (88)
T cd05851 84 RVYV 87 (88)
T ss_pred EEEE
Confidence 6655
No 84
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.37 E-value=3.4e-12 Score=73.23 Aligned_cols=58 Identities=24% Similarity=0.366 Sum_probs=43.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.++|.|.|.+.|+|++. .+... ..++.. ...+|.|.++..+|+|.|+|.+.+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~--~l~~~------~~~~~~------~~~~L~I~~v~~~D~G~YtC~a~~~ 58 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGL--PAAEK------CSRYHV------DGYSLVIKDVTEEDAGIYTILLGIK 58 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCE--ECCCC------CcEEEe------CCCEEEECcCCHHHCEEEEEEEEcc
Confidence 3689999999999999999873 22211 122222 1237999999999999999999985
No 85
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.37 E-value=6.7e-12 Score=74.35 Aligned_cols=80 Identities=18% Similarity=0.237 Sum_probs=57.1
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~ 77 (212)
+.|.|.+...| .+.+.|++++. .+.... .+.||.... ......+|.|.+++.+|+|.|+|.+.+. ...+.
T Consensus 3 ~~l~C~v~~d~~l~~~~~W~~dg~--~i~~~~----~~~~~~~~~-~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a 75 (85)
T cd05853 3 IVLPCQVSHDHSLDIVFTWSFNGH--LIDFQK----DGDHFERVG-GQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSA 75 (85)
T ss_pred EEEEEEeccCCCCCcEEEEEECCE--ECcccC----CCccEEEec-cCCCCCcEEEecCCHHHCEEEEEEEEcccCceEE
Confidence 36899998854 78999999883 332110 123554431 1124458999999999999999999996 56778
Q ss_pred EEEEEEeccc
Q psy13371 78 FVNLNVVVPT 87 (212)
Q Consensus 78 ~~~l~v~~~~ 87 (212)
.+.|.|..||
T Consensus 76 ~a~L~V~~pP 85 (85)
T cd05853 76 AADLIVRGPP 85 (85)
T ss_pred EEEEEEecCC
Confidence 8888888765
No 86
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.36 E-value=6.9e-12 Score=75.77 Aligned_cols=71 Identities=25% Similarity=0.349 Sum_probs=51.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-Cc-eeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PV-RSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~-~~~~ 78 (212)
+.|.|.+.|.|. .+.|+++++..+.. +.|+.+. .......|+|.++..+|+|.|+|.+.|. +. ....
T Consensus 18 v~l~C~~~G~P~-~v~W~k~~g~~~~~--------~~r~~~~--~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 86 (92)
T cd05866 18 KFFTCTAIGEPE-SIDWYNPQGEKIVS--------SQRVVVQ--KEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEAT 86 (92)
T ss_pred EEEEEEEEEeCC-eEEEEeCCCeEecC--------CCCEEEE--eCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEE
Confidence 368999999998 89999865433322 3466554 2334568999999999999999999986 32 2444
Q ss_pred EEEE
Q psy13371 79 VNLN 82 (212)
Q Consensus 79 ~~l~ 82 (212)
+.|.
T Consensus 87 i~l~ 90 (92)
T cd05866 87 VVLE 90 (92)
T ss_pred EEEE
Confidence 4444
No 87
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.36 E-value=5.6e-12 Score=73.68 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=50.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.|.|+|++. .+ .... ..+.... ....|.|.+++.+|+|.|.|.+.|. +.....+
T Consensus 4 ~~l~C~a~G~P~P~i~W~k~g~-~i-~~~~-----~~~~~~~-----~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~ 71 (76)
T cd05868 4 GTLICRANGNPKPSISWLTNGV-PI-EIAP-----TDPSRKV-----DGDTIIFSKVQERSSAVYQCNASNEYGYLLANA 71 (76)
T ss_pred EEEEEEeeEeCCCeEEEEECCE-Ec-cccC-----CCceEEe-----cCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEE
Confidence 3689999999999999999763 22 2110 0011111 1237889999999999999999996 5566666
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|+|
T Consensus 72 ~l~v 75 (76)
T cd05868 72 FVNV 75 (76)
T ss_pred EEEe
Confidence 6665
No 88
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.36 E-value=6.5e-12 Score=72.90 Aligned_cols=61 Identities=30% Similarity=0.536 Sum_probs=47.7
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|+.+.|.|.+.+.|.|. +.|++++..+... .+......+ .|.|.++..+|+|.|+|.|.|.
T Consensus 1 G~~v~L~C~~~g~P~p~--v~W~k~~~~~~~~----~~~~~~~~~-----~L~i~~v~~~D~G~Y~C~a~N~ 61 (73)
T cd04969 1 GGDVIIECKPKAAPKPT--ISWSKGTELLTNS----SRICIWPDG-----SLEILNVTKSDEGKYTCFAENF 61 (73)
T ss_pred CCeEEEEEeeeEcCCCE--EEEEECCEEcccC----CCEEECCCC-----eEEEccCChhHCEEEEEEEECC
Confidence 67899999999887666 9999999876321 122233333 3999999999999999999998
No 89
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.36 E-value=6.8e-12 Score=72.95 Aligned_cols=65 Identities=28% Similarity=0.478 Sum_probs=47.4
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCCe
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADV 174 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~ 174 (212)
+.|.|.+.|.|.|. +.|++++..+... ..+......+. ....|.|.++..+|+|.|+|.|.|..+
T Consensus 1 v~l~C~v~G~P~P~--v~W~k~~~~l~~~---~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~A~N~~G 65 (75)
T cd05893 1 VRLECRVSGVPHPQ--IFWKKENESLTHN---TDRVSMHQDNC-GYICLLIQGATKEDAGWYTVSAKNEAG 65 (75)
T ss_pred CEEEEEEeEecCCE--EEEEECCEECCCC---CCeEEEEEcCC-CEEEEEECCCCHHHCEEEEEEEEcCCC
Confidence 47899999998887 9999999877421 12233322221 123599999999999999999999843
No 90
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.35 E-value=8.3e-12 Score=75.87 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=51.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+. .+.|+.+. .......|.|.+++.+|+|.|.|.+.|. +.....+
T Consensus 21 ~~L~C~~~g~P~p~v~W~k~g~--~l~-------~~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 89 (92)
T cd05747 21 ARFSCDVDGEPAPTVTWMREGQ--IIV-------SSQRHQIT--STEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQF 89 (92)
T ss_pred EEEEEEEeecCCCEEEEEECCE--ECC-------CCCcEEEE--EcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEE
Confidence 3699999999999999999863 221 13466654 2334578999999999999999999996 4444444
Q ss_pred E
Q psy13371 80 N 80 (212)
Q Consensus 80 ~ 80 (212)
.
T Consensus 90 ~ 90 (92)
T cd05747 90 T 90 (92)
T ss_pred E
Confidence 3
No 91
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.35 E-value=2.8e-11 Score=73.10 Aligned_cols=74 Identities=28% Similarity=0.489 Sum_probs=53.5
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc-CeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcc
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH-DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 170 (212)
.+.+..+..|+.+.|.|.+.|.|. . +.|+++ +..+.. ..+......+. ...|.|.++..+|+|.|+|.|.
T Consensus 6 ~~~~~~v~~G~~v~l~C~~~G~P~-~--v~W~k~~g~~~~~----~~r~~~~~~g~--~~~L~I~~v~~~D~G~Y~C~A~ 76 (92)
T cd05866 6 SLSKVELSVGESKFFTCTAIGEPE-S--IDWYNPQGEKIVS----SQRVVVQKEGV--RSRLTIYNANIEDAGIYRCQAT 76 (92)
T ss_pred EecceEEcCCCeEEEEEEEEEeCC-e--EEEEeCCCeEecC----CCCEEEEeCCC--eeEEEEecCChHHCEEEEEEEE
Confidence 345667899999999999998764 4 999975 555421 12233333332 1359999999999999999999
Q ss_pred cCCe
Q psy13371 171 NADV 174 (212)
Q Consensus 171 n~~~ 174 (212)
|..+
T Consensus 77 N~~G 80 (92)
T cd05866 77 DAKG 80 (92)
T ss_pred cCCC
Confidence 9843
No 92
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.35 E-value=6.3e-12 Score=73.63 Aligned_cols=63 Identities=24% Similarity=0.406 Sum_probs=47.8
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|+.+.|.|.+.+.|.|. +.|++++..+...... ....... ..|.|.+++.+|+|.|+|.|.|.
T Consensus 1 G~~~~l~C~~~g~P~p~--i~W~~~g~~~~~~~~~--~~~~~~~-----~~L~i~~v~~~D~G~Y~C~A~N~ 63 (76)
T cd04978 1 GETGRLDCEAEGIPQPT--ITWRLNGVPIEELPPD--PRRRVDG-----GTLILSNVQPNDTAVYQCNASNV 63 (76)
T ss_pred CCeEEEEEEceeeCCCE--EEEEECCEECCCCCCc--ceEEccC-----CEEEECCCChhhCEEEEEEEEcc
Confidence 67899999999988777 9999999877432211 1111112 24999999999999999999997
No 93
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.35 E-value=5.8e-12 Score=75.46 Aligned_cols=71 Identities=18% Similarity=0.386 Sum_probs=51.3
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
..+.+|+.+.|.|.+.+.|.|. +.|++++..+....... ..... .. ...|.|.++..+|+|.|+|.+.|..
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~--i~W~k~g~~l~~~~~~~-~~~~~-~~---~~~l~i~~~~~~D~G~Y~C~a~N~~ 74 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPT--MRWLKNGKEFKQEHRIG-GYKVR-NQ---HWSLIMESVVPSDKGNYTCVVENEY 74 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCE--EEEEECCEECCCCCcee-eeEEe-CC---ceEEEEccCCcccCEEEEEEEEeCC
Confidence 3477899999999999887665 99999998774321111 11111 11 1358999999999999999999983
No 94
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.35 E-value=9.2e-12 Score=76.37 Aligned_cols=76 Identities=21% Similarity=0.263 Sum_probs=52.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|++++. .+..... ..++|+.+. .......|+|.+++.+|+|.|.|.+.|. +..+..+
T Consensus 19 v~l~C~~~g~p~p~v~W~~~~~--~~~~~~~--~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~ 92 (96)
T cd05732 19 ITLTCEAEGDPIPEITWRRATR--NFSEGDK--SLDGRIVVR--GHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSM 92 (96)
T ss_pred EEEEEEEeEcCCCcEEEEECCc--ccCCCCc--cccceEEEe--CCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEE
Confidence 3689999999999999999762 2211100 113455543 2334568999999999999999999996 4455555
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|.
T Consensus 93 ~l~ 95 (96)
T cd05732 93 YLE 95 (96)
T ss_pred EEe
Confidence 544
No 95
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.35 E-value=3.7e-11 Score=73.05 Aligned_cols=84 Identities=20% Similarity=0.264 Sum_probs=59.4
Q ss_pred ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEee--cCceEEEEEEEeeeeecC-CEE
Q psy13371 88 AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE--KGEVTTSYLLIQQAELKD-SGK 164 (212)
Q Consensus 88 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d-~g~ 164 (212)
+.+.......+.+|+.+.|.|.+.+.|.|. .+.|.+++..+.... ..++.+.+ .+....+.|.|.++...| .|.
T Consensus 3 P~i~~~~s~~~~~G~~~~L~C~~~s~P~P~-~i~W~w~~~~i~~~~--~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~ 79 (98)
T cd05898 3 PIISSEQVQYAVRGERGKVKCFIGSTPPPD-RIAWAWKENVLESGT--SERYTVERTSTGSGVLSTLTINNIMEADFQTH 79 (98)
T ss_pred CEEecCceEEEeCCCcEEEEEEEccCCCCc-EEEEEEccccccCCC--CCCEEEEEEccCCCcEEEEEECCCccccCCcE
Confidence 445556677899999999999998887665 578988877553221 12333322 223345679999998766 789
Q ss_pred EEEEcccCCe
Q psy13371 165 YSCSPSNADV 174 (212)
Q Consensus 165 y~C~~~n~~~ 174 (212)
|.|.|.|..+
T Consensus 80 Y~C~a~N~~G 89 (98)
T cd05898 80 YNCTAWNSFG 89 (98)
T ss_pred EEEEEEeCCc
Confidence 9999999843
No 96
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.35 E-value=2.8e-11 Score=73.15 Aligned_cols=79 Identities=16% Similarity=0.270 Sum_probs=61.6
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNL 81 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l 81 (212)
.|.|.+++.+...+.|++.+.. +..........++||.+.. ....+.+|+|.+++.+|+|.|+|.+...+..+....+
T Consensus 16 ~L~C~v~~~~~~~v~w~~~~~~-~i~~~~~~~~~d~Rf~~~~-~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p~~~~~~~~ 93 (95)
T cd05881 16 IISCRVKNNDDSVIQLLNPNRQ-TIYFRDVRPLKDSRFQLVN-FSSNELRVSLSNVSLSDEGRYFCQLYTDPPQEAYTTI 93 (95)
T ss_pred EEEEEEccCCccEEEEEecCCc-EEEecCccccCCcCEEEEe-CCCCEEEEEECcCCcccCEEEEEEEEcccCeEEEEEE
Confidence 6899999998889999987753 3333333444688999884 4567889999999999999999999987766666555
Q ss_pred E
Q psy13371 82 N 82 (212)
Q Consensus 82 ~ 82 (212)
.
T Consensus 94 ~ 94 (95)
T cd05881 94 T 94 (95)
T ss_pred E
Confidence 4
No 97
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.34 E-value=7.5e-12 Score=74.26 Aligned_cols=75 Identities=19% Similarity=0.233 Sum_probs=49.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce-eeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH-ILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~ 78 (212)
+.|.|.+.|.|.|.+.|+|+.... ....... ....++... ....|.|.+++.+|+|.|.|.+.|. +.....
T Consensus 4 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~--~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 76 (81)
T cd05765 4 ASFHCDVTGRPPPEITWEKQVHGKENLIMRPN--HVRGNVVVT-----NIGQLVIYNAQPQDAGLYTCTARNSGGLLRAN 76 (81)
T ss_pred EEEEeeccccCCCcEEEEecCCCCcceeecCC--cccCCEEEc-----cccEEEEccCCcccCEEEEEEEecCCceEEEE
Confidence 469999999999999999974211 1100000 001122222 3458999999999999999999996 455555
Q ss_pred EEEE
Q psy13371 79 VNLN 82 (212)
Q Consensus 79 ~~l~ 82 (212)
+.|.
T Consensus 77 ~~l~ 80 (81)
T cd05765 77 FPLS 80 (81)
T ss_pred EEEe
Confidence 5554
No 98
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.34 E-value=1.1e-11 Score=74.18 Aligned_cols=72 Identities=13% Similarity=0.297 Sum_probs=50.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+.. ... ..++.. ......|.|.++..+|+|.|+|.+.|. +.....+
T Consensus 12 ~~L~C~~~g~P~p~i~W~k~g~-~l~~-~~~----~~~~~~----~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 81 (85)
T cd05857 12 VKFRCPAAGNPTPTMRWLKNGK-EFKQ-EHR----IGGYKV----RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY 81 (85)
T ss_pred EEEEEEcCCCCCCEEEEEECCE-ECCC-CCc----eeeeEE----eCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEE
Confidence 3689999999999999999873 2221 110 001111 124557999999999999999999996 5555555
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|.
T Consensus 82 ~l~ 84 (85)
T cd05857 82 HLD 84 (85)
T ss_pred EEE
Confidence 554
No 99
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.34 E-value=2e-11 Score=74.66 Aligned_cols=81 Identities=19% Similarity=0.298 Sum_probs=56.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+.+.+.+.+.|++.++..+ .........++|+.+.. ....+.+|+|.+++.+|+|.|+|.+......+..+.
T Consensus 15 v~L~C~~~~~~~~~v~W~~p~~~~~-~~~~~~~~~~~r~~~~~-~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~ 92 (95)
T cd05717 15 ATLKCRVKNNDNSSLQWSNPNQQTL-YFNDKRALRDNRIQLVN-FSANELSISISNVSLSDEGRYTCSLYTMPVQTAKAT 92 (95)
T ss_pred EEEEEEECCCCCceEEEeCCCCcEE-EeccccccccCcEEEEc-CCCCeeEEEEccCCcccCEEEEEEEecCCCceEEEE
Confidence 3689999999999999997554222 21211112356888752 344567899999999999999999987654555555
Q ss_pred EEE
Q psy13371 81 LNV 83 (212)
Q Consensus 81 l~v 83 (212)
|.|
T Consensus 93 ~~v 95 (95)
T cd05717 93 VTV 95 (95)
T ss_pred EEC
Confidence 543
No 100
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.33 E-value=9e-12 Score=75.38 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=50.3
Q ss_pred CeeEeeeCCCCCceEEEEeeC---cceeeeecceeeecCCceEEEee-----CCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHR---DIHILTVGSYTYTSDQRFSAIHR-----REGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~---~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|.|.|.|.|+|.. +..+.+.+. .+...... .......|+|.+++.+|+|.|+|.+.|.
T Consensus 4 v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 77 (90)
T cd05858 4 VEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGL------PYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNS 77 (90)
T ss_pred EEEEEEEecCCCCEEEEEEecccCCcEeCCCCC------eeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeC
Confidence 369999999999999999853 111111110 01111100 1122357999999999999999999986
Q ss_pred -CceeEEEEEEE
Q psy13371 73 -PVRSFFVNLNV 83 (212)
Q Consensus 73 -~~~~~~~~l~v 83 (212)
+.....+.|.|
T Consensus 78 ~G~~~~~a~L~V 89 (90)
T cd05858 78 IGISHHSAWLTV 89 (90)
T ss_pred CCcccceEEEEE
Confidence 55566666665
No 101
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.33 E-value=7.9e-12 Score=72.97 Aligned_cols=62 Identities=21% Similarity=0.424 Sum_probs=43.5
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
++|.|.+.+.|.|. +.|++++........ ..+......+ ..|.|.++..+|+|.|+|.|.|.
T Consensus 1 a~l~C~~~G~P~P~--v~W~k~~~~~~~~~~-~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~A~N~ 62 (75)
T cd05763 1 ARLECAATGHPTPQ--IAWQKDGGTDFPAAR-ERRMHVMPED----DVFFIVDVKIEDTGVYSCTAQNT 62 (75)
T ss_pred CEeEeecccccCCE--EEEEeCCCccCCccc-ccceEEecCC----CEEEEeeCCcccCEEEEEEEEcC
Confidence 47899999988787 999998864221111 1122222222 24999999999999999999997
No 102
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.33 E-value=1.5e-11 Score=74.49 Aligned_cols=72 Identities=31% Similarity=0.477 Sum_probs=54.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+++.|.|.+.|++++ ..+.. +.++.... ......|.|.+++.+|+|.|+|.+.+. +..+..+
T Consensus 18 ~~l~c~~~~~p~~~v~W~~~~--~~l~~-------~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~ 86 (90)
T PF07679_consen 18 VTLECEVSGNPPPTVTWYKNG--RPLTS-------SQRYQIES--DGGSSSLTIKNVTREDAGTYTCVASNSSGEATASV 86 (90)
T ss_dssp EEEEEEEEESSSSEEEEEETT--EEEES-------SSSEEEEE--ETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEeCCCCcccccccc--cceee-------eeeeeeec--ccceeEEccCCCChhhCEEEEEEEEECCCEEEEEE
Confidence 368999999999999999986 33321 45666653 337889999999999999999999986 3444555
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|.|
T Consensus 87 ~l~V 90 (90)
T PF07679_consen 87 NLTV 90 (90)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 5543
No 103
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.32 E-value=1.6e-11 Score=74.48 Aligned_cols=70 Identities=19% Similarity=0.253 Sum_probs=50.0
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFVN 80 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 80 (212)
.|.|.+.+.|.|.+.|+|++. .+.. ++++.... ......+|.|.+++.+|+|.|+|.+.|. +.....+.
T Consensus 20 ~L~C~v~g~P~p~i~W~k~~~-~~~~--------~~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (92)
T cd05891 20 NLTCTVFGNPDPEVIWFKNDQ-DIEL--------SEHYSVKL-EQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVT 89 (92)
T ss_pred EEEEEEEEeCCCeEEEEECCE-ECCC--------CCCEEEEE-cCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEE
Confidence 699999999999999999873 2221 33454432 1223457999999999999999999985 34444444
Q ss_pred E
Q psy13371 81 L 81 (212)
Q Consensus 81 l 81 (212)
|
T Consensus 90 v 90 (92)
T cd05891 90 V 90 (92)
T ss_pred E
Confidence 3
No 104
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.32 E-value=6.4e-12 Score=73.58 Aligned_cols=71 Identities=20% Similarity=0.174 Sum_probs=50.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|++++. .+..... ... .......|.|.+++.+|+|.|+|.+.|. +.....+
T Consensus 4 ~~l~C~~~g~P~p~i~W~~~g~-~~~~~~~-------~~~----~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~ 71 (76)
T cd04978 4 GRLDCEAEGIPQPTITWRLNGV-PIEELPP-------DPR----RRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANA 71 (76)
T ss_pred EEEEEEceeeCCCEEEEEECCE-ECCCCCC-------cce----EEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeE
Confidence 3689999999999999998763 2221111 000 1113458999999999999999999996 5556666
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|.|
T Consensus 72 ~l~V 75 (76)
T cd04978 72 FVHV 75 (76)
T ss_pred EEEE
Confidence 6655
No 105
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.32 E-value=3.5e-11 Score=75.31 Aligned_cols=68 Identities=22% Similarity=0.328 Sum_probs=49.1
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEE--eecCceEEEEEEEeeee-ecCCEEEEEEcccC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVI--TEKGEVTTSYLLIQQAE-LKDSGKYSCSPSNA 172 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~ 172 (212)
.|..+.|.|.+.+.|.|. +.|++++..+.... .+... ...+....+.|.|.++. .+|.|.|+|.|.|.
T Consensus 22 ~g~~v~L~C~a~G~P~p~--i~W~k~g~~l~~~~---~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~ 92 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQ--FRWAKNGVPLDLGN---PRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNS 92 (109)
T ss_pred CCCEEEEEEECcccCCCE--EEEEECCEECCCCC---CeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeC
Confidence 467899999999887665 99999998774221 12211 12222233569999987 58999999999998
No 106
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.31 E-value=2.5e-11 Score=70.87 Aligned_cols=64 Identities=14% Similarity=0.274 Sum_probs=45.8
Q ss_pred CeeEeeeCC-CCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKG-LLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
|.|.|.+.| .|.|.+.|+|++. .+...... ..+.+. .......|+|.++..+|+|.|+|.+.|.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~-~l~~~~~~-----~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 65 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGK-ELNRKNKP-----RNIKIR--NKKKNSELQINKAKLADSGEYTCVVENI 65 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCe-eccccCCc-----ceEEEE--ecCceEEEEEccCCcccCeEEEEEEEEc
Confidence 579999999 8999999999763 22211100 011121 2334568999999999999999999986
No 107
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.31 E-value=2.2e-11 Score=73.73 Aligned_cols=71 Identities=11% Similarity=0.119 Sum_probs=50.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|++++. .+.. . .+.... .......|.|.+++.+|.|.|.|.+.|. +.....+
T Consensus 18 v~l~C~~~G~P~p~v~W~~~g~-~~~~-~-------~~~~~~--~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~ 86 (90)
T cd04972 18 ATIRCTAEGSPLPKVEWIIAGL-IVIQ-T-------RTDTLE--TTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSV 86 (90)
T ss_pred EEEEEEEEEcCCCeEEEEECCE-EccC-C-------ccEEEE--ecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEE
Confidence 3689999999999999999874 2211 1 111111 2234568999999999999999999996 4555565
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|+
T Consensus 87 ~L~ 89 (90)
T cd04972 87 QVT 89 (90)
T ss_pred EEe
Confidence 554
No 108
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.31 E-value=2.2e-11 Score=71.59 Aligned_cols=66 Identities=27% Similarity=0.439 Sum_probs=49.0
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCCe
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADV 174 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~ 174 (212)
|+.+.|.|.+.+.|.|. +.|++++..+.. ..+......+. ...|.|.++..+|.|.|+|.|.|..+
T Consensus 1 G~~v~l~C~~~g~P~p~--v~W~~~~~~~~~----~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G 66 (78)
T cd05743 1 GETVEFTCVATGVPTPI--INWRLNWGHVPD----SARVSITSEGG--YGTLTIRDVKESDQGAYTCEAINTRG 66 (78)
T ss_pred CCEEEEEEEEEEecCCE--EEEEECCeECCC----CCCEEEEECCC--EEEEEECCCChHHCEEEEEEEEecCC
Confidence 67899999999988776 999998876521 12222222221 24699999999999999999999843
No 109
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.31 E-value=1.7e-11 Score=74.98 Aligned_cols=72 Identities=17% Similarity=0.303 Sum_probs=52.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+... +.++... .....|+|.+++.+|+|.|+|.+.|. +.....+
T Consensus 21 v~L~C~~~g~P~p~v~W~k~g~--~~~~~------~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 88 (95)
T cd05730 21 VTLACDADGFPEPTMTWTKDGE--PIESG------EEKYSFN----EDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEI 88 (95)
T ss_pred EEEEEeccEeCCCEEEEEECCE--ECcCC------CCEEEEe----CCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEE
Confidence 3689999999999999999773 22211 1233332 12346999999999999999999996 5566667
Q ss_pred EEEEe
Q psy13371 80 NLNVV 84 (212)
Q Consensus 80 ~l~v~ 84 (212)
.|.|.
T Consensus 89 ~L~V~ 93 (95)
T cd05730 89 HLKVF 93 (95)
T ss_pred EEEEE
Confidence 77664
No 110
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.31 E-value=2.3e-11 Score=73.51 Aligned_cols=69 Identities=17% Similarity=0.372 Sum_probs=52.6
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
.+..+.+|+.++|.|.+.+. .|. +.|++++..+.. .+......+ ..|.|.++..+|+|.|.|.|.|..
T Consensus 11 ~~~~v~~g~~v~l~C~a~g~-~p~--i~W~kng~~l~~-----~~~~~~~~~----~~L~I~~v~~~D~G~Y~C~a~N~~ 78 (91)
T cd05740 11 GNQPPEDNQPVTLTCEAEGQ-ATY--IWWVNNGSLLVP-----PRLQLSNDN----RTLTFNNVTRSDTGHYQCEASNEV 78 (91)
T ss_pred CccccccCCcEEEEEEeCCC-CCE--EEEEECCEECCC-----CCEEEeCCC----CEEEECcCChhhCEEEEEEEEcCC
Confidence 35578899999999999987 666 999999887631 112222222 249999999999999999999984
Q ss_pred e
Q psy13371 174 V 174 (212)
Q Consensus 174 ~ 174 (212)
+
T Consensus 79 G 79 (91)
T cd05740 79 S 79 (91)
T ss_pred C
Confidence 3
No 111
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.31 E-value=2.7e-11 Score=70.59 Aligned_cols=64 Identities=30% Similarity=0.592 Sum_probs=46.5
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
+.|.|.+.+.|.|. +.|++++..+.... .+......+. ...+|.|.++..+|+|.|+|.|.|..
T Consensus 1 v~L~C~v~G~P~P~--v~W~k~~~~i~~~~---~r~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~N~~ 64 (75)
T cd05744 1 VRLECRVSAIPPPQ--IFWKKNNEMLTYNT---DRISLYQDNC-GRICLLIQNANKEDAGWYTVSAVNEA 64 (75)
T ss_pred CEEEEEEeecCCCe--EEEEECCEECCCCC---CcEEEEEcCC-CeEEEEECCCCcccCEEEEEEEEcCC
Confidence 47999999998887 99999998774221 1222221111 11359999999999999999999983
No 112
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.31 E-value=3e-11 Score=70.70 Aligned_cols=72 Identities=21% Similarity=0.337 Sum_probs=51.8
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFVN 80 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 80 (212)
.|.|.+.|.|.|.+.|+|++. .+.... ..++... .....|.|.++..+|.|.|+|.+.|. +.....+.
T Consensus 2 ~L~C~v~g~P~p~v~W~k~~~-~l~~~~------~~~~~~~----~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 70 (76)
T cd05736 2 SLRCHAEGIPLPRLTWLKNGM-DITPKL------SKQLTLI----ANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISS 70 (76)
T ss_pred EeEeEeeecCCCEEEEEECCE-ECCCCC------CccEEEe----CCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEE
Confidence 589999999999999999773 222211 1234332 12347999999999999999999986 55566666
Q ss_pred EEEe
Q psy13371 81 LNVV 84 (212)
Q Consensus 81 l~v~ 84 (212)
|.|.
T Consensus 71 l~V~ 74 (76)
T cd05736 71 LFVE 74 (76)
T ss_pred EEEE
Confidence 6654
No 113
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.31 E-value=1.5e-11 Score=70.51 Aligned_cols=59 Identities=31% Similarity=0.651 Sum_probs=45.2
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
+.|.|.+.+.|.|. +.|++++..+.. ..+......+ .|.|.++..+|+|.|+|.|.|..
T Consensus 1 v~L~C~~~g~P~p~--i~W~k~g~~~~~----~~~~~~~~~~-----~L~I~~~~~~D~G~Y~C~a~N~~ 59 (69)
T cd05746 1 VQIPCSAQGDPEPT--ITWNKDGVQVTE----SGKFHISPEG-----YLAIRDVGVADQGRYECVARNTI 59 (69)
T ss_pred CEeEecceEeCCCE--EEEEECCEECCC----CCCEEECCCC-----EEEECcCChhhCEEEEEEEECCC
Confidence 47999999998777 999999877631 1222222232 49999999999999999999983
No 114
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.31 E-value=1.1e-11 Score=74.14 Aligned_cols=67 Identities=19% Similarity=0.289 Sum_probs=49.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+. .+.++... +..|.|.++..+|+|.|+|.+.|. +.....+
T Consensus 17 ~~l~C~~~g~p~p~v~W~k~g~--~~~-------~~~~~~~~------~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 81 (85)
T cd05728 17 LRWECKASGNPRPAYRWLKNGQ--PLA-------SENRIEVE------AGDLRITKLSLSDSGMYQCVAENKHGTIYASA 81 (85)
T ss_pred EEEEEEeeEeCCCEEEEEECCE--ECC-------CCCeEEEe------CCEEEEeeCCHHHCEEEEEEEECCCCeEEEEE
Confidence 3689999999999999999773 222 12344432 237999999999999999999996 4455555
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|.
T Consensus 82 ~l~ 84 (85)
T cd05728 82 ELA 84 (85)
T ss_pred EEE
Confidence 544
No 115
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.30 E-value=7.5e-11 Score=68.62 Aligned_cols=62 Identities=27% Similarity=0.500 Sum_probs=46.8
Q ss_pred cEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 103 TINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 103 ~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.+.|.|.+.+.|.|. +.|++++..+.. ..+........ .+.|.|.++..+|+|.|+|.|.|.
T Consensus 1 ~~~l~c~~~G~P~p~--v~W~k~g~~l~~----~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~N~ 62 (74)
T cd05748 1 SVRLEVPISGRPTPT--VTWSKDGKPLKL----SGRVQIETTAS--STSLVIKNAERSDSGKYTLTLKNP 62 (74)
T ss_pred CEEEEeeEeeeCCCe--EEEEECCEEcCC----CCeEEEEECCC--eEEEEECCCCcCcCEEEEEEEECC
Confidence 368999999998887 999999987721 12222222211 256999999999999999999998
No 116
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.30 E-value=4.2e-11 Score=74.97 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=54.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeC--CCCeEEEEEcccC-CCCCEEEEEEecCC-Ccee
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRR--EGDEWTLHIKWAQ-KRDAGVYECQLSTQ-PVRS 76 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~i~~~~-~~d~G~Y~C~~~~~-~~~~ 76 (212)
+.|.|.+.|.|.|.+.|+|++. .+... +.|+...... ......|+|.++. .+|.|.|+|.+.|. +...
T Consensus 26 v~L~C~a~G~P~p~i~W~k~g~--~l~~~------~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~ 97 (109)
T cd05773 26 ANLVCQAQGVPRVQFRWAKNGV--PLDLG------NPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDS 97 (109)
T ss_pred EEEEEECcccCCCEEEEEECCE--ECCCC------CCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCc
Confidence 3689999999999999999773 22211 2344332111 1124579999997 59999999999996 5567
Q ss_pred EEEEEEEeccc
Q psy13371 77 FFVNLNVVVPT 87 (212)
Q Consensus 77 ~~~~l~v~~~~ 87 (212)
..+.|.+..+|
T Consensus 98 ~~i~L~~~~~p 108 (109)
T cd05773 98 LDIQLVSTSRP 108 (109)
T ss_pred EEEEEEecCCC
Confidence 77777776543
No 117
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.30 E-value=4e-11 Score=70.02 Aligned_cols=66 Identities=14% Similarity=0.305 Sum_probs=46.9
Q ss_pred EEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 105 NLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 105 ~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
.+.|.+.|.|.|. +.|++++.++..+.... ............+.|.|.++..+|+|.|+|.|.|..
T Consensus 2 ~i~~~v~G~P~Pt--i~W~kng~~l~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~ 67 (79)
T cd05855 2 CIPFTVKGNPKPT--LQWFHEGAILNESEYIC-TKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEY 67 (79)
T ss_pred eEEEEEeEeCCCc--eEEEECCEECCCCccee-eeeEeecccceEEEEEECCCCcccCEEEEEEEEcCC
Confidence 4789999999998 99999999884221110 011111222234569999999999999999999983
No 118
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.30 E-value=1.1e-11 Score=74.76 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=49.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++.. ... +.+.. ..+..|.|.+++.+|+|.|.|.+.|. +.....+
T Consensus 19 v~l~C~~~g~P~p~v~W~k~~~~-~~~--------~~~~~------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~ 83 (88)
T cd04968 19 VTLECFALGNPVPQIKWRKVDGS-MPS--------SAEIS------MSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQG 83 (88)
T ss_pred EEEEEEeeEeCCCEEEEEECCCc-CCC--------ccEEE------EeCCEEEECCCCcccCEEEEEEEEECCCcEEEEE
Confidence 36999999999999999997742 211 11111 13458999999999999999999986 4555666
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|.|
T Consensus 84 ~l~V 87 (88)
T cd04968 84 RIYV 87 (88)
T ss_pred EEEE
Confidence 6654
No 119
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.30 E-value=1.4e-11 Score=73.28 Aligned_cols=69 Identities=16% Similarity=0.326 Sum_probs=48.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+.|.|.+.|+|++. .+.... ... .......|.|.+++.+|+|.|+|.+.|. +.....+
T Consensus 12 v~L~C~~~g~p~p~i~W~k~~~-~~~~~~--------~~~----~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~ 78 (82)
T cd05856 12 VRLKCVASGNPRPDITWLKDNK-PLTPTE--------IGE----SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATY 78 (82)
T ss_pred EEEEEEeeEeCCCcEEEEECCc-CCcCCc--------cce----ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEE
Confidence 4699999999999999999874 221111 000 1224568999999999999999999985 4444444
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|.
T Consensus 79 ~v~ 81 (82)
T cd05856 79 KVD 81 (82)
T ss_pred EEe
Confidence 443
No 120
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.29 E-value=2.7e-11 Score=73.21 Aligned_cols=68 Identities=25% Similarity=0.401 Sum_probs=49.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-C-ceeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-P-VRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~-~~~~~ 78 (212)
+.|.|.+.|. .|.+.|+|++. .+. ++|+.+. .....|+|.+++.+|+|.|.|.+.|. + ..+..
T Consensus 21 v~l~C~a~g~-~p~i~W~kng~--~l~--------~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~ 85 (91)
T cd05740 21 VTLTCEAEGQ-ATYIWWVNNGS--LLV--------PPRLQLS----NDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDP 85 (91)
T ss_pred EEEEEEeCCC-CCEEEEEECCE--ECC--------CCCEEEe----CCCCEEEECcCChhhCEEEEEEEEcCCCCEEeee
Confidence 3699999999 99999999773 221 2243333 13347999999999999999999996 2 34556
Q ss_pred EEEEE
Q psy13371 79 VNLNV 83 (212)
Q Consensus 79 ~~l~v 83 (212)
+.|.|
T Consensus 86 ~~L~V 90 (91)
T cd05740 86 YILNV 90 (91)
T ss_pred EEEEe
Confidence 66655
No 121
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.29 E-value=3.8e-11 Score=72.03 Aligned_cols=73 Identities=29% Similarity=0.493 Sum_probs=54.2
Q ss_pred CCCceeeeCCCcEEEEeEE-eeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcc
Q psy13371 92 GSPDLHVDEGSTINLTCSI-KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~-~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 170 (212)
.|.+..+.+|+.+.|.|.+ .+.|.|. +.|++++..+.... .+...... ..|.|.++..+|+|.|+|.+.
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~--i~W~k~g~~~~~~~---~~~~~~~~-----~~L~I~~~~~~D~G~Y~C~a~ 71 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPT--VSWRKDGQPLNLDN---ERVRIVDD-----GNLLIAEARKSDEGTYKCVAT 71 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCE--EEEEECCEECCCCC---CCEEEccC-----CEEEEeECCcccCEEEEEEEE
Confidence 3566788899999999998 5666565 99999998764321 12222222 249999999999999999999
Q ss_pred cCCe
Q psy13371 171 NADV 174 (212)
Q Consensus 171 n~~~ 174 (212)
|..+
T Consensus 72 N~~G 75 (86)
T cd05724 72 NMVG 75 (86)
T ss_pred eccC
Confidence 9843
No 122
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.29 E-value=3.7e-11 Score=72.93 Aligned_cols=72 Identities=25% Similarity=0.370 Sum_probs=49.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-C-ceeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-P-VRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~-~~~~~ 78 (212)
+.|.|.+.|.| +.+.|+++++..+.. .+++.... ......+|+|.+++.+|+|.|+|.+.|. + ..+..
T Consensus 18 ~~l~C~~~G~p-~~i~W~~~~~~~~~~--------~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~s 87 (92)
T cd04977 18 KFFLCQVIGEP-KDISWFSPNGEKLVT--------QQQISVVQ-NDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEAT 87 (92)
T ss_pred EEEEEEeEeeC-CeEEEECCCCCEecc--------CCCEEEEe-CCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeE
Confidence 46999999997 499999865433332 22443332 3345678999999999999999999996 3 33444
Q ss_pred EEEE
Q psy13371 79 VNLN 82 (212)
Q Consensus 79 ~~l~ 82 (212)
+.|.
T Consensus 88 v~l~ 91 (92)
T cd04977 88 VNLK 91 (92)
T ss_pred EEEE
Confidence 4443
No 123
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.29 E-value=3.7e-11 Score=70.76 Aligned_cols=67 Identities=22% Similarity=0.404 Sum_probs=50.8
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|....+.+|+.+.|.|.+.+. .+. +.|++++.++... .+.... . ..|.|.++..+|+|.|+|.|.|.
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~--v~W~k~g~~l~~~----~~~~~~-~-----~~L~I~~~~~~DsG~Y~C~a~n~ 67 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQS--INWTKDGVQLGEN----NRTRIT-G-----EEVQIKDAVPRDSGLYACVTSSP 67 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-Cce--EEEeeCCcCCCCC----ceEEEe-C-----CEEEECCCChhhCEEEEEEEeCC
Confidence 345678899999999999875 344 9999999877321 122221 2 24999999999999999999987
No 124
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.29 E-value=2.3e-11 Score=70.08 Aligned_cols=58 Identities=26% Similarity=0.473 Sum_probs=44.8
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
+.|.|.+.+.|.|. +.|++++.++... .. ..... ..|.|.++..+|+|.|+|.|.|..
T Consensus 1 ~~l~c~v~g~P~p~--v~W~k~g~~l~~~----~~-~~~~~-----~~L~I~~v~~~D~G~YtC~a~N~~ 58 (71)
T cd04976 1 VRLPVKVKAYPPPE--IQWYKNGKLISEK----NR-TKKSG-----HSLTIKDVTEEDAGNYTVVLTNKQ 58 (71)
T ss_pred CEEEeEEEEeCCCE--EEEEECCEECCCC----CE-EEcCC-----CEEEECcCCHHHCEEEEEEEEcCC
Confidence 36899999998777 9999999887322 11 11112 359999999999999999999983
No 125
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.29 E-value=6.1e-11 Score=69.40 Aligned_cols=61 Identities=23% Similarity=0.377 Sum_probs=43.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccC---C-CCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQ---K-RDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~---~-~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|.|.|.++|+|++. .+... .+.++.... .+.+|.|.++. + +|+|.|.|.+.|.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~--~~~~~-----~~~~~~~~~----~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~ 65 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGK--FFNVA-----KDPRVSMRR----RSGTLVIDFSGGGRPEDYEGEYQCFARNN 65 (77)
T ss_pred CEEEEeccccCCCEEEEEECCE--EccCc-----CCCcEEEeC----CCceEEEeccCCCCCCCCCEEEEEEEEec
Confidence 4799999999999999999873 22111 134554431 34578887764 2 4699999999996
No 126
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.29 E-value=5.5e-11 Score=70.16 Aligned_cols=73 Identities=18% Similarity=0.326 Sum_probs=50.0
Q ss_pred EEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeec---CceEEEEEEEeeeeecCCEEEEEEcccC-CeeEEEEE
Q psy13371 105 NLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK---GEVTTSYLLIQQAELKDSGKYSCSPSNA-DVASVYVH 180 (212)
Q Consensus 105 ~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~~n~-~~~~~~~~ 180 (212)
.|.|.+.+.|.|. ++|++++.++...... ....... .....+.|.|.++..+|+|.|+|.|.|. ......+.
T Consensus 2 ~i~~~v~G~P~P~--v~W~k~g~~i~~~~~~--~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~ 77 (81)
T cd04971 2 CIPFTVRGNPKPT--LTWYHNGAVLNESDYI--RTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSIS 77 (81)
T ss_pred eEEEEeEeeCCCc--EEEEECCEECcCCCce--eEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEE
Confidence 4789999998888 9999999988532211 1111111 1223456999999999999999999998 33444444
Q ss_pred E
Q psy13371 181 V 181 (212)
Q Consensus 181 v 181 (212)
+
T Consensus 78 ~ 78 (81)
T cd04971 78 A 78 (81)
T ss_pred e
Confidence 3
No 127
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.28 E-value=7.7e-11 Score=71.78 Aligned_cols=76 Identities=24% Similarity=0.410 Sum_probs=52.4
Q ss_pred eeCCCceeee---CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeee-ecCCEEE
Q psy13371 90 ILGSPDLHVD---EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAE-LKDSGKY 165 (212)
Q Consensus 90 ~~~~~~~~~~---~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y 165 (212)
+..|.+..+. +|+.+.|.|.+.+.|.|. +.|++++..+.... ..+. ...++ .|.|.++. .+|.|.|
T Consensus 5 ~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~--i~W~k~g~~l~~~~--~~~~-~~~~g-----~L~i~~~~~~~D~G~Y 74 (94)
T cd05848 5 VQEPDDAIFPTDSDEKKVILNCEARGNPVPT--YRWLRNGTEIDTES--DYRY-SLIDG-----NLIISNPSEVKDSGRY 74 (94)
T ss_pred EECCCcEEccCCCCCCEEEEEEEeeecCCCE--EEEEECCeECccCC--CceE-EeeCC-----eEEEccCCccCcCEEE
Confidence 3444444332 478999999999998776 99999998774221 1111 22222 38888874 6999999
Q ss_pred EEEcccCCee
Q psy13371 166 SCSPSNADVA 175 (212)
Q Consensus 166 ~C~~~n~~~~ 175 (212)
+|.|.|..+.
T Consensus 75 ~C~A~N~~G~ 84 (94)
T cd05848 75 QCLATNSIGS 84 (94)
T ss_pred EEEEEcCCCe
Confidence 9999998543
No 128
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.28 E-value=5.2e-11 Score=69.79 Aligned_cols=60 Identities=30% Similarity=0.563 Sum_probs=44.9
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
++|.|.+.+.|.|. +.|++++.++.... ......... ..|.|.++..+|+|.|.|.|.|.
T Consensus 1 v~L~C~~~g~P~p~--v~W~k~g~~l~~~~---~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~N~ 60 (77)
T cd05760 1 VTLRCHIDGHPRPT--YQWFRDGTPLSDGQ---GNYSVSSKE----RTLTLRSAGPDDSGLYYCCAHNA 60 (77)
T ss_pred CEEEEEeeecCCCc--EEEEECCEECCCCC---ccEEEeCCC----CEEEEeeCCcccCEEEEEEEEeC
Confidence 47999999998887 99999998763221 111222111 25999999999999999999997
No 129
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.28 E-value=3.6e-11 Score=70.46 Aligned_cols=61 Identities=26% Similarity=0.369 Sum_probs=43.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCC----CCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQK----RDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|.|.|.+.|+|++. .+... .+.++... ..++.|.|.++.. +|+|.|.|.+.|.
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~--~l~~~-----~~~~~~~~----~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~ 65 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGT--HFDPE-----KDPRVTMK----PDSGTLVIDNMNGGRAEDYEGEYQCYASNE 65 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCe--ECCCC-----CCCCEEEe----CCCCEEEEeccCCCCCcCCCEEEEEEEEcC
Confidence 5799999999999999999773 22211 12333332 1345788887754 7899999999996
No 130
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.28 E-value=2.8e-11 Score=69.75 Aligned_cols=59 Identities=22% Similarity=0.481 Sum_probs=44.1
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
+.|.|.+.|.|.|. +.|++++..+... ........ ..|.|.++..+|+|.|+|.|.|..
T Consensus 1 ~~L~C~~~G~P~P~--v~W~k~~~~~~~~----~~~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~N~~ 59 (71)
T cd05876 1 LVLECIAEGLPTPE--VHWDRIDGPLSPN----RTKKLNNN-----KTLQLDNVLESDDGEYVCTAENSE 59 (71)
T ss_pred CEEEEEeeEecCCe--EEEEECCcCCCCC----ceeEEcCC-----CEEEEcccCHHhCEEEEEEEEcCC
Confidence 46899999998887 9999998765211 11111111 259999999999999999999983
No 131
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.27 E-value=6.4e-11 Score=71.64 Aligned_cols=76 Identities=24% Similarity=0.470 Sum_probs=51.8
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEee--C--CCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC---C
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYD--S--SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---D 173 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~---~ 173 (212)
|+.+.|.|.+.+.|.|. +.|++++...... . ....+......+ .|.|.++..+|+|.|+|.|.|. .
T Consensus 1 G~~v~L~C~~~g~P~p~--v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~-----~L~I~~v~~~D~G~Y~C~a~N~~G~~ 73 (90)
T cd05726 1 GRTVTFQCEATGNPQPA--IFWQKEGSQNLLFSYQPPQSSSRFSVSQTG-----DLTITNVQRSDVGYYICQTLNVAGSI 73 (90)
T ss_pred CCEEEEEEECCccCCCE--EEEEeCCCcceeecccCCCCCCeEEECCCC-----eEEEeeCChhhCEEEEEEEEcCCCce
Confidence 67899999998887776 9999987643211 0 112223322222 4999999999999999999997 3
Q ss_pred eeEEEEEEee
Q psy13371 174 VASVYVHVLN 183 (212)
Q Consensus 174 ~~~~~~~v~~ 183 (212)
...+.+.|..
T Consensus 74 ~~~~~l~V~~ 83 (90)
T cd05726 74 LTKAYLEVTD 83 (90)
T ss_pred EEEEEEEEee
Confidence 3444555543
No 132
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.27 E-value=1.3e-10 Score=70.55 Aligned_cols=73 Identities=23% Similarity=0.430 Sum_probs=52.0
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEE-cCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcc
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYH-HDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 170 (212)
.|.+..+..|+.+.|.|.+.+.| + .+.|++ ++..+.. ........ .+ ...+.|.|.++..+|+|.|+|.|.
T Consensus 6 ~p~~~~v~~G~~~~l~C~~~G~p-~--~i~W~~~~~~~~~~---~~~~~~~~-~~-~~~~~L~I~~v~~~D~G~Y~C~A~ 77 (92)
T cd04977 6 VPSQGEISVGESKFFLCQVIGEP-K--DISWFSPNGEKLVT---QQQISVVQ-ND-DVRSTLTIYNANIEDAGIYKCVAT 77 (92)
T ss_pred ecCcEEECCCCeEEEEEEeEeeC-C--eEEEECCCCCEecc---CCCEEEEe-CC-CCEEEEEEecCCcccCEEEEEEEE
Confidence 45667889999999999999875 4 499997 4544422 11111211 11 123569999999999999999999
Q ss_pred cC
Q psy13371 171 NA 172 (212)
Q Consensus 171 n~ 172 (212)
|.
T Consensus 78 N~ 79 (92)
T cd04977 78 DA 79 (92)
T ss_pred cC
Confidence 97
No 133
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.26 E-value=1.5e-10 Score=70.48 Aligned_cols=75 Identities=21% Similarity=0.372 Sum_probs=51.4
Q ss_pred eCCCceeeeC---CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeee-ecCCEEEE
Q psy13371 91 LGSPDLHVDE---GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAE-LKDSGKYS 166 (212)
Q Consensus 91 ~~~~~~~~~~---g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~ 166 (212)
..|....+.+ |+.+.|.|.+.+.|.|. +.|++++..+..... .... ...+ .|.|.+.. ..|.|.|.
T Consensus 6 ~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~--i~W~~~g~~l~~~~~--~~~~-~~~g-----~L~I~~~~~~~D~G~Y~ 75 (94)
T cd05850 6 EQPSSLLFPEGSPEEKVTLGCRARASPPAT--YRWKMNGTEIKFAPE--SRYT-LVAG-----NLVINNPQKARDAGSYQ 75 (94)
T ss_pred ECCCCEEecCCCCCCeEEEEeEceeCCCCE--EEEEECCEECccCCC--ceEE-EECC-----eEEEccCCccCcCEEEE
Confidence 3444444434 46899999999987776 999999988742211 1222 2222 38887765 59999999
Q ss_pred EEcccCCee
Q psy13371 167 CSPSNADVA 175 (212)
Q Consensus 167 C~~~n~~~~ 175 (212)
|.|.|..+.
T Consensus 76 C~A~N~~G~ 84 (94)
T cd05850 76 CLAINRCGT 84 (94)
T ss_pred EEEEcCcCc
Confidence 999998443
No 134
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.25 E-value=4.3e-11 Score=69.58 Aligned_cols=62 Identities=27% Similarity=0.509 Sum_probs=46.3
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCCe
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADV 174 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~ 174 (212)
++|.|.+.+.|.|. +.|++++.++.... ..+......+ .|.|.+++.+|+|.|+|.|.|..+
T Consensus 1 a~l~C~~~G~P~p~--v~W~k~~~~~~~~~--~~~~~~~~~g-----~L~i~~~~~~D~G~Y~C~a~N~~G 62 (74)
T cd05738 1 ATMLCAASGNPDPE--ITWFKDFLPVDTTS--NGRIKQLRSG-----ALQIENSEESDQGKYECVATNSAG 62 (74)
T ss_pred CEEEEEEeEecCCE--EEEEECCEECccCC--CCCEEEcCCc-----EEEECCCChhhCEEEEEEEECCCC
Confidence 47899999988787 99999998763221 1223333332 399999999999999999999843
No 135
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.25 E-value=1.1e-10 Score=68.31 Aligned_cols=61 Identities=26% Similarity=0.465 Sum_probs=41.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCC----CCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQK----RDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|.|.|.+.|+|++. . +... .+.++... ..+++|.|..+.. .|+|.|+|.+.|.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~-~-l~~~-----~~~~~~~~----~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~ 65 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGT-H-FDID-----KDPKVTMK----PNTGTLVINIMNGEKAEAYEGVYQCTARNE 65 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCe-E-CCCc-----CCCCEEEe----CCCceEEEeccccCCCCCCCEEEEEEEEcC
Confidence 5799999999999999999763 2 2111 12233322 1344677776654 3789999999996
No 136
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.25 E-value=7.3e-11 Score=71.39 Aligned_cols=78 Identities=26% Similarity=0.517 Sum_probs=49.2
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcC----eEEEeeCCCCceeEEeecCc----eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHD----EVISYDSSRGGVSVITEKGE----VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~----~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|+.+.|.|.+.+.|.|. +.|+++. ..+....... .......+. ...+.|.|.+++.+|+|.|+|.|.|.
T Consensus 1 G~~v~L~C~~~g~P~P~--i~W~k~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 77 (90)
T cd05858 1 GSTVEFVCKVYSDAQPH--IQWLKHVEKNGSKYGPDGLPY-VTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNS 77 (90)
T ss_pred CCeEEEEEEEecCCCCE--EEEEEecccCCcEeCCCCCee-EEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeC
Confidence 67899999999988776 9999853 3332111000 111111110 01246999999999999999999997
Q ss_pred ---CeeEEEEEE
Q psy13371 173 ---DVASVYVHV 181 (212)
Q Consensus 173 ---~~~~~~~~v 181 (212)
...++.+.|
T Consensus 78 ~G~~~~~a~L~V 89 (90)
T cd05858 78 IGISHHSAWLTV 89 (90)
T ss_pred CCcccceEEEEE
Confidence 334444443
No 137
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.25 E-value=6.6e-11 Score=71.53 Aligned_cols=70 Identities=20% Similarity=0.429 Sum_probs=45.1
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcC----eEEEeeCCCCceeEEe--ecC-ceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHD----EVISYDSSRGGVSVIT--EKG-EVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~----~~~~~~~~~~~~~~~~--~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|+.++|.|.+.+.|.|. +.|++++ ..+............. ... ......|.|.++..+|+|.|+|.|.|.
T Consensus 1 G~~v~l~C~v~g~P~P~--i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 77 (90)
T cd04974 1 GSDVEFHCKVYSDAQPH--IQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNS 77 (90)
T ss_pred CCcEEEEEEEeCCCCCe--EEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecc
Confidence 67899999999998888 9999864 2221111110000100 000 001135999999999999999999998
No 138
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.25 E-value=8.8e-11 Score=69.18 Aligned_cols=67 Identities=28% Similarity=0.533 Sum_probs=51.1
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCC-CceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcc
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEP-PAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 170 (212)
.|.+..+..|+.+.|.|.+.|.|.| . +.|.+++.++..... . ..+.|.|..+ .|.|.|.|.|.
T Consensus 4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~--I~W~k~g~~l~~~~~--------~----~~s~L~i~~~--~d~g~Y~C~A~ 67 (81)
T cd05749 4 EPEDLSVTANTPFNLTCQAVGPPEPVE--ILWWQGGSPLGDPPA--------P----SPSVLNVPGL--NETSKFSCEAH 67 (81)
T ss_pred CCCceEEcCCCCEEEEEEeeeecCCeE--EEEEECCEECCCCCC--------C----CCCEEEEccc--cCCeEEEEEEE
Confidence 4667889999999999999999877 6 999999987732000 0 1124777765 57899999999
Q ss_pred cCCe
Q psy13371 171 NADV 174 (212)
Q Consensus 171 n~~~ 174 (212)
|..+
T Consensus 68 N~~G 71 (81)
T cd05749 68 NAKG 71 (81)
T ss_pred eccC
Confidence 9844
No 139
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.25 E-value=4.5e-11 Score=68.39 Aligned_cols=57 Identities=23% Similarity=0.448 Sum_probs=44.6
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
+.|.|.+.|.|.|. +.|+++++++... .. ... + ..|.|.++..+|+|.|+|.|.|..
T Consensus 1 ~~~~c~v~G~P~P~--v~W~k~g~~l~~~----~~--~~~-~----~~L~I~~v~~~D~G~YtC~a~N~~ 57 (70)
T cd05864 1 VKIPVKYYGYPPPE--VKWYKNGQLIVLN----HT--FKR-G----VHLTIYEVTEKDAGNYTVVLTNPI 57 (70)
T ss_pred CEEEeEEEEeCCCE--EEEEECCEECCCC----CE--Ecc-C----CEEEECcCCHHHCEEEEEEEEECC
Confidence 36899999998887 9999999987321 11 111 1 249999999999999999999984
No 140
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.24 E-value=9.8e-11 Score=68.12 Aligned_cols=62 Identities=32% Similarity=0.656 Sum_probs=45.1
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEc-CeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHH-DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
|+.+.|.|.+.+.|.|. +.|++. +..+. . ..+.....++ .|.|..+..+|.|.|+|.|.|+.
T Consensus 1 G~~~~l~C~~~g~P~p~--v~W~~~~~~~~~-~---~~~~~~~~~~-----~L~i~~~~~~D~G~Y~C~a~N~~ 63 (74)
T cd05764 1 GQRATLRCKARGDPEPA--IHWISPDGKLIS-N---SSRTLVYDNG-----TLDILITTVKDTGSFTCIASNAA 63 (74)
T ss_pred CCeEEEEEEccCcCCCE--EEEEeCCCEEec-C---CCeEEEecCC-----EEEEEECChhhCEEEEEEEECCC
Confidence 67899999998887776 999974 55442 1 1122222222 48999999999999999999983
No 141
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.24 E-value=7.5e-11 Score=67.65 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=44.5
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+.|.|.+.|.|.|. +.|++++.++... ..+.. ..+ ..|.|.++..+|+|.|+|.|.|.
T Consensus 1 ~~l~c~v~g~P~P~--v~W~kdg~~l~~~---~~~~~--~~~----~~L~I~~v~~~D~G~YtC~a~~~ 58 (72)
T cd07702 1 YRLTPKVKAFPAPE--VIWLKDGLPAAEK---CSRYH--VDG----YSLVIKDVTEEDAGIYTILLGIK 58 (72)
T ss_pred CeEEeeEEEcCCCe--EEEEECCEECCCC---CcEEE--eCC----CEEEECcCCHHHCEEEEEEEEcc
Confidence 36899999998888 9999999876321 11221 122 24999999999999999999997
No 142
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.24 E-value=1.4e-10 Score=70.44 Aligned_cols=63 Identities=24% Similarity=0.431 Sum_probs=46.5
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeee-ecCCEEEEEEcccCCe
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAE-LKDSGKYSCSPSNADV 174 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~~ 174 (212)
|+.+.|.|.+.+.|.|. +.|++++..+... ..+.. ...+ .|.|.++. .+|+|.|+|.|.|..+
T Consensus 19 ~~~v~l~C~a~G~P~P~--i~W~k~~~~i~~~---~~~~~-~~~g-----~L~I~~~~~~~D~G~Y~C~A~N~~G 82 (93)
T cd05849 19 EGKVSVNCRARANPFPI--YKWRKNNLDIDLT---NDRYS-MVGG-----NLVINNPDKYKDAGRYVCIVSNIYG 82 (93)
T ss_pred CCeEEEeCcCccCCCCE--EEEEECCEEccCC---CCeEE-EECC-----EEEECcCCcCCCCEEEEEEEEeCcc
Confidence 45799999999988776 9999999876321 11222 2222 48898875 5899999999999843
No 143
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.23 E-value=1.1e-10 Score=69.26 Aligned_cols=67 Identities=27% Similarity=0.474 Sum_probs=50.3
Q ss_pred eeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 97 HVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 97 ~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
....|+.+.|.|.+.+.|.|. +.|++++..+...... .... ....|.|.++..+|+|.|+|.+.|..
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~--i~W~k~~~~~~~~~~~-----~~~~---~~~~L~i~~v~~~D~G~Y~C~a~N~~ 71 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPD--ITWLKDNKPLTPTEIG-----ESRK---KKWTLSLKNLKPEDSGKYTCHVSNRA 71 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCc--EEEEECCcCCcCCccc-----eecC---ceEEEEEccCChhhCEEEEEEEEcCC
Confidence 456799999999999888777 9999998766322111 1111 12459999999999999999999983
No 144
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.23 E-value=1.4e-10 Score=67.87 Aligned_cols=65 Identities=18% Similarity=0.351 Sum_probs=45.7
Q ss_pred CeeEeeeCC-CCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKG-LLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|+|.+.+ .|.+.+.|+|++. .+..... .+.++... .......|.|.++..+|+|.|+|.+.|.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~-~i~~~~~----~~~~~~~~--~~~~~~~L~I~~~~~~DsG~Y~C~a~N~ 66 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGK-EIGAKNK----PDNKIKIR--KKKKSSELQISKASLADNGEYKCMVSSK 66 (76)
T ss_pred CEEEEecccCCCCCceEEEECCc-ccccCCC----CCceEEEE--eCCcEEEEEECcCCcccCEEEEEEEEeC
Confidence 579999875 6889999999763 2221110 12233332 2344568999999999999999999985
No 145
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.23 E-value=5.4e-11 Score=72.30 Aligned_cols=71 Identities=14% Similarity=0.191 Sum_probs=48.9
Q ss_pred CeeEeeeCC-----CCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-Cc
Q psy13371 1 MLHQRKLKG-----LLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PV 74 (212)
Q Consensus 1 ~~l~C~~~~-----~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~ 74 (212)
+.|.|.+.+ .|.|.|.|+|++.....+.. .+.|+.. .+..|.|.++..+|+|.|+|.+.|. +.
T Consensus 17 ~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~-----~~~r~~~------~~~~L~I~~~~~~DsG~Y~C~~~N~~g~ 85 (94)
T cd05756 17 VVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTE-----ERSRMHQ------QKDLLWFLPAALEDSGLYTCVVRNSTYC 85 (94)
T ss_pred eEEECCCCCcccccCCCceEEEEEcCCCCccccc-----ccceeee------cCCeEEEccCCcccCeEEEEEEcCCCcc
Confidence 479999999 68899999998742111110 1123222 2348999999999999999999986 44
Q ss_pred eeEEEEEE
Q psy13371 75 RSFFVNLN 82 (212)
Q Consensus 75 ~~~~~~l~ 82 (212)
.+..+.|.
T Consensus 86 ~~~~~~L~ 93 (94)
T cd05756 86 MKVSISLT 93 (94)
T ss_pred EEEEEEEE
Confidence 45555554
No 146
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.23 E-value=5.4e-11 Score=72.29 Aligned_cols=71 Identities=28% Similarity=0.481 Sum_probs=50.5
Q ss_pred ceeeeCCCcEEEEeEEee-----CCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 95 DLHVDEGSTINLTCSIKY-----SPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~-----~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
...+.+|+.+.|.|.+.+ .|.|. +.|++++..+........+... .+ ..|.|.++..+|+|.|+|.+
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~--v~Wyk~~~~~~~~~~~~~r~~~-~~-----~~L~I~~~~~~DsG~Y~C~~ 79 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLN--LTWYKSDGKTPIPTEERSRMHQ-QK-----DLLWFLPAALEDSGLYTCVV 79 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCce--EEEEEcCCCCcccccccceeee-cC-----CeEEEccCCcccCeEEEEEE
Confidence 345778999999999987 45555 9999998764322111112211 12 24999999999999999999
Q ss_pred ccCC
Q psy13371 170 SNAD 173 (212)
Q Consensus 170 ~n~~ 173 (212)
.|..
T Consensus 80 ~N~~ 83 (94)
T cd05756 80 RNST 83 (94)
T ss_pred cCCC
Confidence 9983
No 147
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.22 E-value=2.5e-10 Score=69.82 Aligned_cols=76 Identities=25% Similarity=0.382 Sum_probs=53.9
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeee-----eecCCEEE
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQA-----ELKDSGKY 165 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~g~y 165 (212)
..|.+..+.+|+++.|.|.+.+.|.|. +.|++++..+..... .......++ .+.|.++ ..+|.|.|
T Consensus 4 ~~P~~~~~~~g~~v~l~C~v~g~P~p~--i~W~k~g~~l~~~~~--~~~~~~~~~-----~l~i~~v~~~~~~~~D~G~Y 74 (95)
T cd05722 4 SEPSDIVAVRGGPVVLNCSAEGEPPPK--IEWKKDGVLLNLVSD--ERRQQLPNG-----SLLITSVVHSKHNKPDEGFY 74 (95)
T ss_pred ECCCCeEEcCCCCEEEeeecccCCCCE--EEEEECCeECccccC--cceEEccCC-----eEEEeeeeccCCCCCcCEEE
Confidence 345667788999999999999887666 999999987743221 112222232 2555555 57899999
Q ss_pred EEEcccC-Cee
Q psy13371 166 SCSPSNA-DVA 175 (212)
Q Consensus 166 ~C~~~n~-~~~ 175 (212)
+|.|.|. .+.
T Consensus 75 ~C~a~N~~~G~ 85 (95)
T cd05722 75 QCVAQNDSLGS 85 (95)
T ss_pred EEEEECCccCc
Confidence 9999998 543
No 148
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.22 E-value=4.8e-11 Score=68.45 Aligned_cols=58 Identities=24% Similarity=0.586 Sum_probs=43.6
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
++|.|.+.+.|.|. +.|++++..+. . .+......+ .|.|.++..+|+|.|+|.|.|..
T Consensus 1 v~l~C~~~g~P~p~--v~W~k~~~~~~----~-~~~~~~~~~-----~L~I~~v~~~D~G~Y~C~a~N~~ 58 (69)
T cd05725 1 VEFQCEVGGDPVPT--VLWRKEDGELP----K-GRAEILDDK-----SLKIRNVTAGDEGSYTCEAENMV 58 (69)
T ss_pred CEEEEECccCCCCE--EEEEECCccCC----C-CcEEEeeCC-----EEEECcCChhHCEEEEEEEEcCC
Confidence 47899999887776 99999976542 1 122222222 49999999999999999999983
No 149
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.22 E-value=2.9e-10 Score=69.12 Aligned_cols=76 Identities=22% Similarity=0.400 Sum_probs=52.6
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCC----CceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSR----GGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
.+..+.+|+.+.|.|.+.+.|.|. +.|.+.++.+...... ..+....... .....|.|.++..+|.|.|+|.+
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~--v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~I~nV~~~D~G~YtC~~ 81 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSS--LQWSNTAQQTLYFGEKRALRDNRIQLVKST-PTELIISISNVQLSDEGEYTCSI 81 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCe--EEEeccCccEEEeCCeEEEeCCeEEEEeCC-CceEEEEECCCCcccCEEEEEEE
Confidence 456789999999999999887776 9999887643221110 1111111111 12356999999999999999999
Q ss_pred ccC
Q psy13371 170 SNA 172 (212)
Q Consensus 170 ~n~ 172 (212)
...
T Consensus 82 ~t~ 84 (95)
T cd05882 82 FTM 84 (95)
T ss_pred Eee
Confidence 875
No 150
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.22 E-value=1e-10 Score=69.85 Aligned_cols=71 Identities=25% Similarity=0.330 Sum_probs=47.5
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|+.+.|.|.+.+.+.|.+.+.|.+.+............ ..........+.|.|.+++.+|+|.|+|.+.|.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~-~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~ 71 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTR-QSLSEATELSSTLTIPNATLKDSGTYTCAASSG 71 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecc-cccccceEEEEEEEECCCChhhCEEEEEEEccC
Confidence 68899999999984455559998877543211000000 011111223467999999999999999999997
No 151
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.22 E-value=1.6e-10 Score=69.10 Aligned_cols=72 Identities=19% Similarity=0.289 Sum_probs=48.4
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|+.+.|.|.+.+.+.+...+.|...++......................+.|.|.+++.+|+|.|+|.|.|.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~ 72 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSG 72 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeec
Confidence 688999999988877777789988775431110000000001111223467999999999999999999997
No 152
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.21 E-value=5.8e-11 Score=67.89 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=42.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.|.|+|++. . +... .++.. +...|+|.++ .|+|.|+|.+.|. +.....+
T Consensus 4 v~L~C~a~G~P~P~v~W~k~g~-~-l~~~-------~~~~~------~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a 66 (69)
T cd05739 4 VNLTCVAVGAPMPYVKWMKGGE-E-LTKE-------DEMPV------GRNVLELTNI--YESANYTCVAISSLGMIEATA 66 (69)
T ss_pred EEEEEEeeecCCCEEEEEECCE-E-CCCc-------cceec------CccEEEEecc--ccCeeEEEEEEeCCCEEEEEE
Confidence 4699999999999999999873 2 2211 12211 2336888887 4899999999986 4344433
No 153
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.21 E-value=9e-11 Score=67.70 Aligned_cols=59 Identities=24% Similarity=0.408 Sum_probs=43.8
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
+.|.|.+.+.|.|. +.|++++..+.. . .......+ ..|.|.++..+|+|.|+|.|.|..
T Consensus 1 v~l~C~~~g~P~p~--v~W~k~~~~~~~----~-~~~~~~~~----~~L~i~~v~~~D~G~Y~C~a~N~~ 59 (71)
T cd05731 1 LLLECIAEGLPTPE--ISWIKIGGELPA----D-RTKFENFN----KTLKIDNVSEEDDGEYRCTASNSL 59 (71)
T ss_pred CEEEEEeeEecCCe--EEEEECCeECCC----C-ceeEecCC----CEEEECCCCHHHCEEEEEEEEeCC
Confidence 47899999988777 999999876521 1 11111111 259999999999999999999983
No 154
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.21 E-value=9.6e-11 Score=70.29 Aligned_cols=59 Identities=25% Similarity=0.443 Sum_probs=44.6
Q ss_pred CeeEeee-CCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKL-KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+ .|.|.|.+.|+|++. .+... +.++... .+..|.|.+++.+|+|.|.|.+.|.
T Consensus 14 v~l~C~~~~g~p~p~i~W~k~g~--~~~~~------~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~ 73 (86)
T cd05724 14 AVLECSPPRGHPEPTVSWRKDGQ--PLNLD------NERVRIV-----DDGNLLIAEARKSDEGTYKCVATNM 73 (86)
T ss_pred EEEEEECCCCCCCCEEEEEECCE--ECCCC------CCCEEEc-----cCCEEEEeECCcccCEEEEEEEEec
Confidence 3689998 788999999999773 22211 2344443 2347999999999999999999985
No 155
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.20 E-value=3.2e-10 Score=67.54 Aligned_cols=77 Identities=18% Similarity=0.088 Sum_probs=49.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC---ceeE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP---VRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~ 77 (212)
+.|.|.+.+.|.+.+.|+++++........ ......+.......|+|.+++.+|+|.|.|.+.+.. ..+.
T Consensus 4 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-------~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~ 76 (84)
T cd05861 4 ITVNCIVQGNEVVDFSWTYPGKDIGKGIPE-------VEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFK 76 (84)
T ss_pred EEEEEEEECCCccEEEEEECCccCCCCceE-------EEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeE
Confidence 469999999999999999766311100000 000000011124579999999999999999998752 3455
Q ss_pred EEEEEEe
Q psy13371 78 FVNLNVV 84 (212)
Q Consensus 78 ~~~l~v~ 84 (212)
.+.++|.
T Consensus 77 sv~i~V~ 83 (84)
T cd05861 77 KVNITVH 83 (84)
T ss_pred EEEEEEe
Confidence 5666654
No 156
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.20 E-value=9.3e-11 Score=69.98 Aligned_cols=77 Identities=17% Similarity=0.098 Sum_probs=49.2
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeE
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~ 77 (212)
+.|.|.+.+. |.|.+.|.+++........ ...+.... +.......|+|.+++.+|+|.|+|.+.+. +..+.
T Consensus 4 ~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~-----~~~~~~~~-~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~ 77 (84)
T cd05742 4 LVLNCTVLTELNEGVDFQWTYPGKKRGRGKS-----MVTRQSLS-EATELSSTLTIPNATLKDSGTYTCAASSGTMDQKE 77 (84)
T ss_pred EEEEEEEEeCCCccEEEEEecCCcccCCceE-----eecccccc-cceEEEEEEEECCCChhhCEEEEEEEccCCCceEE
Confidence 4699999999 8899999886632110000 00011111 11123457999999999999999999986 34555
Q ss_pred EEEEEE
Q psy13371 78 FVNLNV 83 (212)
Q Consensus 78 ~~~l~v 83 (212)
...|.|
T Consensus 78 s~~v~v 83 (84)
T cd05742 78 STKVNI 83 (84)
T ss_pred EEEEEE
Confidence 555544
No 157
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.18 E-value=2.2e-10 Score=69.11 Aligned_cols=71 Identities=21% Similarity=0.380 Sum_probs=50.2
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+....+.+|+.+.|.|.+.+ |.+. +.|++++..+........+... ..+ .|.|.+++.+|+|.|.|.+.+.
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~--i~W~k~~~~~~~~~~~~~~~~~-~~~-----~L~I~~~~~~D~G~Y~C~a~~~ 73 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLAS--VVWLFQGGPLQRKEEPEERLLV-TED-----GLLIRSVSPADAGVYTCQSVEH 73 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCce--EEEEECCcccccccCcCceEEE-cCC-----CEEEccCCHHHCEEEEEEEecC
Confidence 34567889999999999865 4454 9999998766432110111111 222 2899999999999999999876
No 158
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.18 E-value=2.9e-10 Score=66.47 Aligned_cols=68 Identities=25% Similarity=0.382 Sum_probs=45.2
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCCe
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADV 174 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~ 174 (212)
+.|.|.+.+. .|...+.|+++++.+........+...... ...+.|.|.++..+|+|.|+|.+.|+.+
T Consensus 1 ~~L~C~a~~~-~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~--~~~~~L~I~~~~~~DsG~Y~C~a~N~~g 68 (76)
T cd05895 1 LVLRCETVSE-YPSLRFKWFKNGKEIGAKNKPDNKIKIRKK--KKSSELQISKASLADNGEYKCMVSSKLG 68 (76)
T ss_pred CEEEEecccC-CCCCceEEEECCcccccCCCCCceEEEEeC--CcEEEEEECcCCcccCEEEEEEEEeCCC
Confidence 4689998754 233349999999877533222122222111 1234699999999999999999999843
No 159
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.18 E-value=1.8e-10 Score=67.19 Aligned_cols=66 Identities=26% Similarity=0.407 Sum_probs=45.8
Q ss_pred EEEEeEEee-CCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCCe
Q psy13371 104 INLTCSIKY-SPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADV 174 (212)
Q Consensus 104 ~~l~C~~~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~ 174 (212)
+.|.|.+.+ .|.|. +.|++++..+....... ....... ...+.|.|.++..+|.|.|+|.|.|..+
T Consensus 1 ~~l~C~~~g~~P~p~--~~W~k~g~~l~~~~~~~-~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G 67 (75)
T cd05750 1 LVLKCEATSEYPSLR--FKWFKDGKELNRKNKPR-NIKIRNK--KKNSELQINKAKLADSGEYTCVVENILG 67 (75)
T ss_pred CEEEEEccCCCCCce--EEEEcCCeeccccCCcc-eEEEEec--CceEEEEEccCCcccCeEEEEEEEEcCC
Confidence 468999998 66665 99999998774322111 1111111 1235699999999999999999999843
No 160
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.17 E-value=4.3e-10 Score=64.27 Aligned_cols=60 Identities=23% Similarity=0.439 Sum_probs=43.6
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCCe
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADV 174 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~ 174 (212)
|+.+.|.|.+.+.|.|. +.|++++.++... ... .. +. +.|.|.++ .|+|.|+|.|.|..+
T Consensus 1 G~~v~L~C~a~G~P~P~--v~W~k~g~~l~~~----~~~-~~--~~---~~L~i~~~--~d~G~Y~C~A~N~~G 60 (69)
T cd05739 1 GGSVNLTCVAVGAPMPY--VKWMKGGEELTKE----DEM-PV--GR---NVLELTNI--YESANYTCVAISSLG 60 (69)
T ss_pred CCeEEEEEEeeecCCCE--EEEEECCEECCCc----cce-ec--Cc---cEEEEecc--ccCeeEEEEEEeCCC
Confidence 67899999999998887 9999999876321 111 11 11 24888776 479999999999843
No 161
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.17 E-value=2.2e-10 Score=67.85 Aligned_cols=66 Identities=27% Similarity=0.553 Sum_probs=45.0
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCe---EEEeeCCC-CceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDE---VISYDSSR-GGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
|+.+.|.|.+.+.|.|. +.|++++. ........ ........ ...|.|.++..+|+|.|+|.|.|..
T Consensus 1 G~~v~l~C~~~g~P~p~--v~W~k~~~~~~~~~~~~~~~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C~a~N~~ 70 (81)
T cd05765 1 GETASFHCDVTGRPPPE--ITWEKQVHGKENLIMRPNHVRGNVVVTN-----IGQLVIYNAQPQDAGLYTCTARNSG 70 (81)
T ss_pred CCcEEEEeeccccCCCc--EEEEecCCCCcceeecCCcccCCEEEcc-----ccEEEEccCCcccCEEEEEEEecCC
Confidence 67899999999888777 99998742 11111100 00111111 1359999999999999999999983
No 162
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.17 E-value=2e-10 Score=68.31 Aligned_cols=69 Identities=23% Similarity=0.408 Sum_probs=52.2
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEccc
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
.|.+..+..|+++.|.|.+.+ +.+ .+.|.+++.++.... .+... .++. |.|.+++.+|+|.|+|.+.+
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~--~i~W~~ng~~i~~~~---~r~~~-~~~~-----L~I~nv~~~DsG~Y~C~a~e 69 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLA--RVVWKFDGKVLTPES---AKYLL-YRDG-----LLIFNASEADAGRYQCLSVE 69 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCC--eEEEEECCEECCCCC---ceEEE-ECCc-----EEEeCCCHHHCEEEEEEEEe
Confidence 356678899999999999753 334 599999999885331 23332 3333 99999999999999999987
Q ss_pred C
Q psy13371 172 A 172 (212)
Q Consensus 172 ~ 172 (212)
.
T Consensus 70 ~ 70 (87)
T cd05873 70 K 70 (87)
T ss_pred c
Confidence 6
No 163
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.16 E-value=2.5e-10 Score=67.21 Aligned_cols=65 Identities=18% Similarity=0.337 Sum_probs=45.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+. .+.+.|+|++. .+.. +.|+.+. ...|.|.+++.+|+|.|+|.+.+. +.....+
T Consensus 12 v~l~C~~~~~-~~~v~W~k~g~-~l~~--------~~~~~~~------~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~ 75 (79)
T cd04973 12 LQLRCRLRDD-VQSINWTKDGV-QLGE--------NNRTRIT------GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYF 75 (79)
T ss_pred EEEEEEecCC-CceEEEeeCCc-CCCC--------CceEEEe------CCEEEECCCChhhCEEEEEEEeCCCCcccEEE
Confidence 3689999996 57899999873 2221 2344443 127999999999999999999875 3333333
Q ss_pred EE
Q psy13371 80 NL 81 (212)
Q Consensus 80 ~l 81 (212)
.|
T Consensus 76 ~v 77 (79)
T cd04973 76 SV 77 (79)
T ss_pred EE
Confidence 33
No 164
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.15 E-value=3e-10 Score=69.15 Aligned_cols=59 Identities=24% Similarity=0.435 Sum_probs=42.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccC-CCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQ-KRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|.|.|.+.|+|++. .+.... +.++... +.+|.|.++. .+|+|.|.|.+.|.
T Consensus 22 v~l~C~~~G~P~P~i~W~k~g~--~l~~~~-----~~~~~~~------~g~L~i~~~~~~~D~G~Y~C~A~N~ 81 (94)
T cd05848 22 VILNCEARGNPVPTYRWLRNGT--EIDTES-----DYRYSLI------DGNLIISNPSEVKDSGRYQCLATNS 81 (94)
T ss_pred EEEEEEeeecCCCEEEEEECCe--ECccCC-----CceEEee------CCeEEEccCCccCcCEEEEEEEEcC
Confidence 3699999999999999999773 222111 1233332 2378888874 69999999999996
No 165
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.15 E-value=1.1e-09 Score=65.13 Aligned_cols=68 Identities=22% Similarity=0.362 Sum_probs=45.7
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|+.++|.|.+.+.|.+. +.|.+.++..... ...............+.|.|.+++.+|+|.|+|.+.|.
T Consensus 1 Ge~~~l~C~~~~~~~~~--~~W~~~~~~~~~~--~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~ 68 (84)
T cd05861 1 GETITVNCIVQGNEVVD--FSWTYPGKDIGKG--IPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHES 68 (84)
T ss_pred CCcEEEEEEEECCCccE--EEEEECCccCCCC--ceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEEC
Confidence 68899999998876555 9999876532100 00000111122223467999999999999999999985
No 166
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.15 E-value=2.8e-10 Score=69.04 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=43.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccC-CCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQ-KRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|.|.|.++|+|++. .+ ... +.|+... +..|.|.++. .+|+|.|.|.+.|.
T Consensus 22 v~l~C~a~G~P~P~i~W~k~~~-~i-~~~------~~~~~~~------~g~L~I~~~~~~~D~G~Y~C~A~N~ 80 (93)
T cd05849 22 VSVNCRARANPFPIYKWRKNNL-DI-DLT------NDRYSMV------GGNLVINNPDKYKDAGRYVCIVSNI 80 (93)
T ss_pred EEEeCcCccCCCCEEEEEECCE-Ec-cCC------CCeEEEE------CCEEEECcCCcCCCCEEEEEEEEeC
Confidence 3689999999999999999873 22 111 2344332 2478998885 69999999999996
No 167
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.13 E-value=1.1e-09 Score=66.76 Aligned_cols=77 Identities=23% Similarity=0.406 Sum_probs=51.5
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCC----CCceeEEeecCceEEEEEEEeeeeecCCEEEEEE
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSS----RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
+.+..+.+|+.+.|.|.+.+.|.|. +.|++.++....... ...+...... .....+|.|.+++.+|+|.|+|.
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~--v~W~~~~~~~l~~~~~~~~~~~r~~~~~~-~~~~~sL~I~~v~~~DsG~Y~C~ 80 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTS--LQWSNPAQQTLYFDDKKALRDNRIELVRA-SWHELSISISDVSLSDEGQYTCS 80 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceE--EEEeCCCCeEEEEcCcccccCCCEEEEEC-CCCcEEEEECcCCcccCEEEEEE
Confidence 3457889999999999998877666 999865432211110 1122222111 11224699999999999999999
Q ss_pred cccC
Q psy13371 169 PSNA 172 (212)
Q Consensus 169 ~~n~ 172 (212)
+.+.
T Consensus 81 ~~t~ 84 (95)
T cd07701 81 LFTM 84 (95)
T ss_pred eEee
Confidence 9875
No 168
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.13 E-value=6.6e-10 Score=68.55 Aligned_cols=77 Identities=18% Similarity=0.271 Sum_probs=44.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEE--cccCCCCCEEEEEEecCC-Cc-ee
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHI--KWAQKRDAGVYECQLSTQ-PV-RS 76 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i--~~~~~~d~G~Y~C~~~~~-~~-~~ 76 (212)
+.|.|.+.|.|.|.+.|+|++. .+..... ....+.... ..+....+.+ ..++.+|+|.|+|.+.|. +. .+
T Consensus 19 ~~l~C~~~g~P~p~i~W~k~g~--~l~~~~~--~~~~~~~~~--~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s 92 (100)
T cd07693 19 ATLNCKAEGRPTPTIQWLKNGQ--PLETDKD--DPRSHRIVL--PSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVS 92 (100)
T ss_pred EEEEeeCCcCCCCEEEEEECCE--ECccccC--CCCcceEEe--cCCcEEEEEeeccCCCcCcCEEEEEEEEccccceec
Confidence 3699999999999999999873 2221000 001111111 1111222222 344789999999999996 33 45
Q ss_pred EEEEEEE
Q psy13371 77 FFVNLNV 83 (212)
Q Consensus 77 ~~~~l~v 83 (212)
..+.|.|
T Consensus 93 ~~~~l~v 99 (100)
T cd07693 93 RNASLEV 99 (100)
T ss_pred ceEEEEe
Confidence 5555554
No 169
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.13 E-value=3.3e-10 Score=66.75 Aligned_cols=62 Identities=31% Similarity=0.471 Sum_probs=42.8
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeC----CCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDS----SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
++|.|.+.+.|.|. +.|++++....... ....+...... ..|.|.++..+|+|.|.|.|.|.
T Consensus 1 v~l~C~~~G~P~P~--v~W~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~N~ 66 (79)
T cd05734 1 VTLNCSAEGYPPPT--IVWKHSKGRGHPQHTHTCCLAGRIQLLSN-----GSLLIKHVLEEDSGYYLCKVSND 66 (79)
T ss_pred CEeEeeCeEeCCCE--EEEEECCCccccccccccccCCCEEEecC-----CeEEECcCCcccCEEEEEEEEeC
Confidence 47999999988787 99998754221110 01122222222 34999999999999999999998
No 170
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.13 E-value=3.6e-10 Score=66.06 Aligned_cols=61 Identities=26% Similarity=0.464 Sum_probs=44.9
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+.|.|.+.+.|.|. +.|++++..+..... ........+ +.|.|.++..+|.|.|+|.+.|.
T Consensus 1 ~~L~C~v~g~P~p~--v~W~k~~~~l~~~~~--~~~~~~~~~----~~l~I~~~~~~D~G~Y~C~a~N~ 61 (76)
T cd05736 1 ASLRCHAEGIPLPR--LTWLKNGMDITPKLS--KQLTLIANG----SELHISNVRYEDTGAYTCIAKNE 61 (76)
T ss_pred CEeEeEeeecCCCE--EEEEECCEECCCCCC--ccEEEeCCC----CEEEECcCCcccCEEEEEEEEcC
Confidence 46899999987776 999999987643221 122222222 24999999999999999999998
No 171
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.12 E-value=3.7e-10 Score=67.06 Aligned_cols=67 Identities=31% Similarity=0.438 Sum_probs=49.5
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEccc
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
.++...+.+|+.++|.|.+... .+...+.|++++..+.... . ...|.|.+++.+|+|.|+|.+.+
T Consensus 5 ~~p~~~V~~G~~vtL~C~~~~~-~~~~~~~w~k~g~~~~~~~---------~-----~~~l~I~~~~~~dsG~Y~C~~~~ 69 (83)
T cd05753 5 QVPSRVVFEGEPLVLRCHGWKN-KPVYKVTYYRDGKAKKYSH---------S-----NSNLSIPQATLSDSGSYHCSGII 69 (83)
T ss_pred ECCcceecCCCCEEEEeeCCCC-CcceEEEEEECCeEccccC---------C-----CceEEECccCHHHCEEEEEEEEe
Confidence 3445578999999999998543 2334599999987653110 0 12499999999999999999998
Q ss_pred CC
Q psy13371 172 AD 173 (212)
Q Consensus 172 ~~ 173 (212)
..
T Consensus 70 ~~ 71 (83)
T cd05753 70 GS 71 (83)
T ss_pred CC
Confidence 73
No 172
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.11 E-value=5.5e-10 Score=68.26 Aligned_cols=60 Identities=23% Similarity=0.447 Sum_probs=40.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEccc-----CCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWA-----QKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~-----~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+.|.|.+.|+|++. .+.... +.++... .++++.|.++ +.+|+|.|.|.+.|.
T Consensus 17 v~l~C~v~g~P~p~i~W~k~g~--~l~~~~-----~~~~~~~-----~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~ 81 (95)
T cd05722 17 VVLNCSAEGEPPPKIEWKKDGV--LLNLVS-----DERRQQL-----PNGSLLITSVVHSKHNKPDEGFYQCVAQND 81 (95)
T ss_pred EEEeeecccCCCCEEEEEECCe--ECcccc-----CcceEEc-----cCCeEEEeeeeccCCCCCcCEEEEEEEECC
Confidence 4689999999999999999773 222111 1122222 1234555554 689999999999997
No 173
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.11 E-value=1.9e-09 Score=65.35 Aligned_cols=66 Identities=26% Similarity=0.469 Sum_probs=46.7
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeee-ecCCEEEEEEcccCCee
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAE-LKDSGKYSCSPSNADVA 175 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~~~ 175 (212)
.|+.+.|.|.+.++|.|. +.|++++..+..... .. ....++ .|.|.++. .+|+|.|+|.|.|..+.
T Consensus 18 ~~~~~~l~C~~~g~p~p~--i~W~k~~~~l~~~~~--~~-~~~~~~-----~L~i~~~~~~~d~G~Y~C~a~N~~G~ 84 (91)
T cd04967 18 DEGKVSLNCRARGSPPPT--YRWLMNGTEIDDEPD--SR-YSLVGG-----NLVISNPSKAKDAGRYQCLASNIVGT 84 (91)
T ss_pred CCCEEEEEEeeeEcCCCE--EEEEECCEECCCCCC--CC-EEEECC-----EEEEecCCccCCCEEEEEEEEcCCCE
Confidence 346799999999887666 999999987632211 11 122222 38888776 48999999999998543
No 174
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.10 E-value=4.9e-10 Score=67.77 Aligned_cols=72 Identities=18% Similarity=0.289 Sum_probs=49.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee-ecce----eeecCCceEEEee-CCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT-VGSY----TYTSDQRFSAIHR-REGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~----~~~~~~r~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|+|.+++.+.+.+.|++.+...+.. .+.. .....+|+..... ...++++|+|.+++.+|+|.|+|.+.+.
T Consensus 10 VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C~v~~~ 87 (94)
T cd07690 10 AELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYICEVEDK 87 (94)
T ss_pred EEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEEEECCc
Confidence 469999999999999999655221111 0110 0012456665531 2446788999999999999999999874
No 175
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.09 E-value=1.6e-09 Score=66.57 Aligned_cols=73 Identities=21% Similarity=0.268 Sum_probs=49.4
Q ss_pred CeeEeeeCCCCCc-eEEEEeeCcceeeeecceeeecCCceEEEeeCC--CCeEEEEEcccCCCC-CEEEEEEecCC-Cce
Q psy13371 1 MLHQRKLKGLLPT-RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRRE--GDEWTLHIKWAQKRD-AGVYECQLSTQ-PVR 75 (212)
Q Consensus 1 ~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~i~~~~~~d-~G~Y~C~~~~~-~~~ 75 (212)
+.|.|.+.|.|.| .|.|++++. .+... .+.|+.+..... .....|+|.++..+| .|.|.|.+.|. +..
T Consensus 19 v~L~C~~~g~P~P~~v~W~~~~~--~i~~~-----~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~ 91 (98)
T cd05758 19 GRVECFIFSTPPPDRIVWTWKEN--ELESG-----SSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSG 91 (98)
T ss_pred EEEEEEEcccCCCCEeEEEECCE--EccCC-----CCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcc
Confidence 3699999999999 699999773 22211 124666653221 123579999999955 99999999986 444
Q ss_pred eEEEE
Q psy13371 76 SFFVN 80 (212)
Q Consensus 76 ~~~~~ 80 (212)
...+.
T Consensus 92 ~~~~~ 96 (98)
T cd05758 92 TAIIS 96 (98)
T ss_pred cEEEE
Confidence 44433
No 176
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.09 E-value=4.1e-09 Score=63.81 Aligned_cols=86 Identities=22% Similarity=0.308 Sum_probs=62.4
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC-
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA- 172 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~- 172 (212)
....+.+|+.+.|.|.+.+.|.|. .+.|.+++..+...... ..........+..+.|.+.++..++.|.|+|.|.|+
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~-~~~W~~~~~~l~~~~~~-~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~ 88 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPE-HQQWIYMNRTLTNTSDH-YVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSD 88 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCe-eeEEEcCCcccCccccc-eeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCC
Confidence 346789999999999999997664 47999988765432221 111222233457788999999999999999999998
Q ss_pred CeeEEEEEE
Q psy13371 173 DVASVYVHV 181 (212)
Q Consensus 173 ~~~~~~~~v 181 (212)
...+..+.+
T Consensus 89 ~~~s~tF~l 97 (101)
T cd05860 89 ASASVTFNV 97 (101)
T ss_pred CeEEEEEEE
Confidence 555555544
No 177
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.09 E-value=1.4e-09 Score=63.57 Aligned_cols=65 Identities=18% Similarity=0.350 Sum_probs=43.6
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeee----ecCCEEEEEEcccCCeeE
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAE----LKDSGKYSCSPSNADVAS 176 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~d~g~y~C~~~n~~~~~ 176 (212)
+.|.|.+.|.|.|. +.|++++..+..... ........+ ..|.|..+. .+|+|.|+|.|.|..+..
T Consensus 1 ~~l~C~~~G~P~P~--v~W~k~g~~~~~~~~--~~~~~~~~~----~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05875 1 IIIECEAKGNPVPT--FQWTRNGKFFNVAKD--PRVSMRRRS----GTLVIDFSGGGRPEDYEGEYQCFARNNLGTA 69 (77)
T ss_pred CEEEEeccccCCCE--EEEEECCEEccCcCC--CcEEEeCCC----ceEEEeccCCCCCCCCCEEEEEEEEeccceE
Confidence 46899999998887 999999986632221 122222111 248887653 246999999999985543
No 178
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.08 E-value=1.7e-09 Score=65.91 Aligned_cols=59 Identities=20% Similarity=0.387 Sum_probs=42.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccC-CCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQ-KRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|.|.|.+.|++++. .+... .+.++.+. +.+|.|.++. .+|+|.|.|.+.|.
T Consensus 22 v~l~C~a~g~P~p~i~W~~~g~--~l~~~-----~~~~~~~~------~g~L~I~~~~~~~D~G~Y~C~A~N~ 81 (94)
T cd05850 22 VTLGCRARASPPATYRWKMNGT--EIKFA-----PESRYTLV------AGNLVINNPQKARDAGSYQCLAINR 81 (94)
T ss_pred EEEEeEceeCCCCEEEEEECCE--ECccC-----CCceEEEE------CCeEEEccCCccCcCEEEEEEEEcC
Confidence 3699999999999999999773 22211 12244432 2368887755 69999999999996
No 179
>PHA03376 BARF1; Provisional
Probab=99.08 E-value=1.1e-08 Score=68.00 Aligned_cols=122 Identities=16% Similarity=0.238 Sum_probs=71.4
Q ss_pred eeEeeeCC---CCCceEEEEeeCc---ceeeee-cce----eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEec
Q psy13371 2 LHQRKLKG---LLPTRVSWIRHRD---IHILTV-GSY----TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70 (212)
Q Consensus 2 ~l~C~~~~---~p~~~v~W~~~~~---~~~~~~-~~~----~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 70 (212)
.|+|..+. .+...|.|+|..+ ...+.. +.. .+...+|+.+.+ ..++.+|.|.+++.+|.|.|+|.++
T Consensus 30 ~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~--~~gnvsLvI~~l~lSDdGtY~C~fQ 107 (221)
T PHA03376 30 TLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR--SANTFFLVVTAANISHDGNYLCRMK 107 (221)
T ss_pred EEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEe--cCCeEEEEEEeeeecCCceEEEEEE
Confidence 58888762 2567999999532 122221 111 123346666653 3488999999999999999999999
Q ss_pred CCCcee-EEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe
Q psy13371 71 TQPVRS-FFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE 127 (212)
Q Consensus 71 ~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~ 127 (212)
.+.... ..-.|++..|-.+...........-+...+.|...+.|+|. +.|.-+..
T Consensus 108 kge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~--~~Wle~~~ 163 (221)
T PHA03376 108 LGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPH--VQWLMPEG 163 (221)
T ss_pred cCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCch--heeccccC
Confidence 753222 22223322211111111000112245678999977777777 99986543
No 180
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.07 E-value=1.5e-09 Score=63.49 Aligned_cols=64 Identities=25% Similarity=0.441 Sum_probs=42.7
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee----cCCEEEEEEcccCCee
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL----KDSGKYSCSPSNADVA 175 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~n~~~~ 175 (212)
+.|.|.+.|.|.|. +.|++++.++...... ........+ .|.|..+.. .|.|.|+|.|.|..+.
T Consensus 1 ~~l~C~a~G~P~P~--i~W~k~g~~l~~~~~~-~~~~~~~~g-----~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~ 68 (77)
T cd05874 1 IVIQCEAKGKPPPS--FSWTRNGTHFDIDKDP-KVTMKPNTG-----TLVINIMNGEKAEAYEGVYQCTARNERGA 68 (77)
T ss_pred CEEEeeCcccCCCe--EEEEECCeECCCcCCC-CEEEeCCCc-----eEEEeccccCCCCCCCEEEEEEEEcCCCe
Confidence 47899999998777 9999999876322211 111111222 377766653 3789999999998443
No 181
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.06 E-value=7.2e-10 Score=64.91 Aligned_cols=64 Identities=20% Similarity=0.363 Sum_probs=43.7
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee----cCCEEEEEEcccCCee
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL----KDSGKYSCSPSNADVA 175 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~n~~~~ 175 (212)
+.|.|.+.|.|.|. +.|++++..+..... ......... ..|.|.++.. +|+|.|+|.|.|..+.
T Consensus 1 i~l~C~~~G~P~P~--v~W~k~g~~l~~~~~--~~~~~~~~~----g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~ 68 (77)
T cd05733 1 IVIKCEAKGNPPPT--FSWTRNGTHFDPEKD--PRVTMKPDS----GTLVIDNMNGGRAEDYEGEYQCYASNELGT 68 (77)
T ss_pred CEEEeeCcccCCCe--EEEEECCeECCCCCC--CCEEEeCCC----CEEEEeccCCCCCcCCCEEEEEEEEcCCCc
Confidence 47899999988777 999999987743221 112221111 2488877643 7899999999998543
No 182
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=99.04 E-value=3.9e-09 Score=65.13 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=52.6
Q ss_pred CeeEeeeCCC---CCceEEEEeeCcceeeee--cceee------ecCCceEEEee-CCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGL---LPTRVSWIRHRDIHILTV--GSYTY------TSDQRFSAIHR-REGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~---p~~~v~W~~~~~~~~~~~--~~~~~------~~~~r~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|+|.+.+. ....+.|+|......... ..... ...+|+.+..+ ...++++|+|.+++.+|+|.|+|.
T Consensus 4 v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 83 (100)
T cd05713 4 AELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLYTCF 83 (100)
T ss_pred EEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEEEEE
Confidence 4699999743 235799998764332211 11000 11257766532 245678999999999999999999
Q ss_pred ecCCC-ceeEEEEEEE
Q psy13371 69 LSTQP-VRSFFVNLNV 83 (212)
Q Consensus 69 ~~~~~-~~~~~~~l~v 83 (212)
+.+.+ ..+..+.|+|
T Consensus 84 v~~~~~~~~~~i~l~v 99 (100)
T cd05713 84 FQSDGFYEEATVELKV 99 (100)
T ss_pred EecCCcEEEEEEEEEE
Confidence 99753 3444455544
No 183
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.02 E-value=4.7e-09 Score=62.64 Aligned_cols=70 Identities=27% Similarity=0.410 Sum_probs=49.7
Q ss_pred eeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 97 HVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 97 ~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
.+..|+.+.|.|.+.+.|.+. +.|++++..+..... ... .........|.|.++..+|.|.|.|.+.|..
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~~--v~W~k~~~~~~~~~~----~~~-~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~ 74 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRPT--ITWLKDGKPFKKEHR----IGG-YKVRKKKWTLILESVVPSDSGKYTCIVENKY 74 (85)
T ss_pred EecCCCcEEEEEEcCCCCCCe--EEEEECCEECcccCc----eeE-EEccCcEEEEEEeECCcccCEEEEEEEEECC
Confidence 466799999999998876555 999999876632211 111 1111122458999999999999999999973
No 184
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.02 E-value=2.5e-09 Score=64.58 Aligned_cols=67 Identities=19% Similarity=0.279 Sum_probs=48.7
Q ss_pred eeeeCCCcEEEEeEEeeCCC---CCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 96 LHVDEGSTINLTCSIKYSPE---PPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~---p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..+..|....|.|...+.+. |.+.+.|++++.++... .... ... ..|.|.++..+|+|.|+|.+.|.
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~----~~~~-~~~-----~~L~I~~v~~~DsG~YtC~~~n~ 74 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGD----RKRF-VKG-----SKLLIQNVTEEDAGNYTCKLTFT 74 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCC----ccEE-ecC-----CEEEEeeCChhhCEEEEEEEEec
Confidence 35778999999998754321 34459999999887421 1111 122 24999999999999999999986
No 185
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.02 E-value=2.7e-09 Score=63.69 Aligned_cols=71 Identities=14% Similarity=0.338 Sum_probs=48.4
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFVN 80 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 80 (212)
.|.|.+.+.|.+.+.|+|++. .+.. +.++.... .......|.|.++..+|+|.|.|.+.+. +.....+.
T Consensus 13 ~l~C~~~~~p~~~v~W~k~~~-~~~~--------~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~ 82 (85)
T cd05729 13 RLKCPASGNPRPTITWLKDGK-PFKK--------EHRIGGYK-VRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYK 82 (85)
T ss_pred EEEEEcCCCCCCeEEEEECCE-ECcc--------cCceeEEE-ccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEE
Confidence 689999999999999999763 2211 11122111 1234568999999999999999999985 33444444
Q ss_pred EE
Q psy13371 81 LN 82 (212)
Q Consensus 81 l~ 82 (212)
|+
T Consensus 83 l~ 84 (85)
T cd05729 83 VD 84 (85)
T ss_pred Ee
Confidence 43
No 186
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.02 E-value=1.5e-09 Score=65.61 Aligned_cols=70 Identities=27% Similarity=0.384 Sum_probs=50.7
Q ss_pred eeeeCCCcEEEEeEEe-eCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 96 LHVDEGSTINLTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~-~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
..+.+|+.+.|.|... +.|.| .+.|++++.+..... ...+.....+|. |.|.+++.+|+|.|+|.|+|..
T Consensus 13 ~~v~eG~~~~L~C~pP~g~P~p--~~~W~k~~~~~~~~~-d~r~~~~~~~G~-----L~fs~v~~~D~g~Y~C~A~n~~ 83 (96)
T cd05727 13 VKVKEGWGVVLFCDPPPHYPDL--SYRWLLNEFPNFIPE-DGRRFVSQTNGN-----LYIAKVEASDRGNYSCFVSSPS 83 (96)
T ss_pred eeeeeCCcEEEeeCCCCCCCCC--EEEEEECCccccccc-CCCeEEeCCCCc-----EEEeecCHhhCceeEEEEEecc
Confidence 4688899999999775 44444 499999986542221 122333333554 9999999999999999999873
No 187
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=99.02 E-value=2.9e-09 Score=65.17 Aligned_cols=73 Identities=16% Similarity=0.313 Sum_probs=48.2
Q ss_pred CeeEeeeCC-CCCceEEEEeeCcceeeeec----ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 1 MLHQRKLKG-LLPTRVSWIRHRDIHILTVG----SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 1 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
+.|+|.... .....+.|+|.....+.... ......+++|..+-.....+++|+|.+++.+|+|.|.|.+...+
T Consensus 7 VtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~~~ 84 (97)
T cd05775 7 VTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINTKN 84 (97)
T ss_pred EEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEcCC
Confidence 468998876 56779999997643332222 11112233443332234457899999999999999999998754
No 188
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.01 E-value=8.2e-09 Score=63.05 Aligned_cols=77 Identities=23% Similarity=0.425 Sum_probs=50.2
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCC----CCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSS----RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
....+.+|+.++|.|.+.+.+.+. +.|++.++....... ...++...... .....|.|.+++.+|+|.|+|.+
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~--v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~I~~v~~~DsG~Y~C~~ 81 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSS--LQWSNPNQQTLYFNDKRALRDNRIQLVNFS-ANELSISISNVSLSDEGRYTCSL 81 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCce--EEEeCCCCcEEEeccccccccCcEEEEcCC-CCeeEEEEccCCcccCEEEEEEE
Confidence 456789999999999997765555 999864432211110 11222221111 12246999999999999999999
Q ss_pred ccCC
Q psy13371 170 SNAD 173 (212)
Q Consensus 170 ~n~~ 173 (212)
.+..
T Consensus 82 ~~~~ 85 (95)
T cd05717 82 YTMP 85 (95)
T ss_pred ecCC
Confidence 8763
No 189
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=99.01 E-value=6.5e-09 Score=64.03 Aligned_cols=83 Identities=18% Similarity=0.165 Sum_probs=53.0
Q ss_pred CeeEeeeCCCC---CceEEEEeeCcce---eee---e--cceee-ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL---PTRVSWIRHRDIH---ILT---V--GSYTY-TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p---~~~v~W~~~~~~~---~~~---~--~~~~~-~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|+|.....+ ...|.|+|..... .+. . +.... ...+|..+..+...++++|+|.+++.+|+|.|.|.
T Consensus 3 v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~ 82 (100)
T cd05888 3 TRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKCR 82 (100)
T ss_pred EEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEEE
Confidence 46999997654 4589999854321 111 0 11111 11256666644456788999999999999999999
Q ss_pred ecCC--CceeEEEEEEE
Q psy13371 69 LSTQ--PVRSFFVNLNV 83 (212)
Q Consensus 69 ~~~~--~~~~~~~~l~v 83 (212)
+.+. +..+..+.|.|
T Consensus 83 v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 83 VITFPAGNFEAELVLTV 99 (100)
T ss_pred EEeCCCCCeeeEEEEEe
Confidence 8873 33445555554
No 190
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.01 E-value=2.2e-09 Score=64.79 Aligned_cols=72 Identities=24% Similarity=0.284 Sum_probs=47.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--ceeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--VRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~ 78 (212)
+.|.|.+.+ |.+.+.|+|++.. +..... ...++... ...|.|.+++.+|+|.|.|.+.+.. .....
T Consensus 14 v~L~C~~~~-p~~~i~W~k~~~~-~~~~~~----~~~~~~~~------~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~ 81 (89)
T cd04979 14 VFLECSPKS-NLASVVWLFQGGP-LQRKEE----PEERLLVT------EDGLLIRSVSPADAGVYTCQSVEHGFKQTLAT 81 (89)
T ss_pred EEEEEeCCC-CCceEEEEECCcc-cccccC----cCceEEEc------CCCEEEccCCHHHCEEEEEEEecCccceeEeE
Confidence 469999987 8889999998742 111100 11233332 1258899999999999999998753 33444
Q ss_pred EEEEEe
Q psy13371 79 VNLNVV 84 (212)
Q Consensus 79 ~~l~v~ 84 (212)
..|.|.
T Consensus 82 ~~l~V~ 87 (89)
T cd04979 82 YSLNVL 87 (89)
T ss_pred EEEEEe
Confidence 455543
No 191
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.00 E-value=4e-09 Score=66.19 Aligned_cols=72 Identities=25% Similarity=0.244 Sum_probs=52.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCccee----eeecc-eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHI----LTVGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~----~~~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+.+.+.+.|+|...... ..... ......+|+.+..+...+.++|+|.+++.+|+|.|.|.+.+.
T Consensus 16 v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~ 92 (109)
T cd04983 16 VTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSES 92 (109)
T ss_pred EEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecC
Confidence 3689999988889999998753211 11110 011245788887555668899999999999999999998864
No 192
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.00 E-value=1.3e-08 Score=63.65 Aligned_cols=84 Identities=17% Similarity=0.182 Sum_probs=54.9
Q ss_pred CeeEeeeCCCC------------CceEEEEeeCcc---ee-eeecceee---ecCCceEEEee-CCCCeEEEEEcccCCC
Q psy13371 1 MLHQRKLKGLL------------PTRVSWIRHRDI---HI-LTVGSYTY---TSDQRFSAIHR-REGDEWTLHIKWAQKR 60 (212)
Q Consensus 1 ~~l~C~~~~~p------------~~~v~W~~~~~~---~~-~~~~~~~~---~~~~r~~~~~~-~~~~~~~L~i~~~~~~ 60 (212)
+.|+|.+.... .+.|.|+|.... .+ ...+.... ...+|+++..+ ...++++|+|.+++.+
T Consensus 5 VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~nl~~s 84 (112)
T cd05900 5 LLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITELRSN 84 (112)
T ss_pred EEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEeecccc
Confidence 46899998653 469999986421 11 11222111 11247777642 2557899999999999
Q ss_pred CCEEEEEEecCC-CceeEEEEEEEe
Q psy13371 61 DAGVYECQLSTQ-PVRSFFVNLNVV 84 (212)
Q Consensus 61 d~G~Y~C~~~~~-~~~~~~~~l~v~ 84 (212)
|+|.|+|.+..+ ...+..+.|.|.
T Consensus 85 DsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 85 DSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cCEEEEEEEecCCCCceeEEEEEEE
Confidence 999999999876 445555555553
No 193
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.99 E-value=1.7e-09 Score=63.28 Aligned_cols=59 Identities=20% Similarity=0.244 Sum_probs=43.0
Q ss_pred CeeEeeeCCCCC-ceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEE
Q psy13371 1 MLHQRKLKGLLP-TRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 79 (212)
+.|.|.+.+.|. +.+.|+|++. .+.. ....|.|.++ .+|+|.|+|++.+. ..+..+
T Consensus 18 V~L~C~~~~~p~~~~~~W~kng~--~l~~-------------------~~~~l~i~~~-~~dsG~Y~C~a~~~-~~S~~v 74 (78)
T cd05752 18 VTLTCNGFNSPEQNSTQWYHNGK--LLET-------------------TTNSYRIRAA-NNDSGEYRCQTQGS-SLSDPV 74 (78)
T ss_pred EEEEEeCCCCCCCccEEEEECCE--Eeec-------------------cCCeEEEeec-ccCCEEeEEECCCC-cCCCCE
Confidence 469999999875 5799999873 2210 1237888899 99999999999875 345555
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|+
T Consensus 75 ~l~ 77 (78)
T cd05752 75 HLE 77 (78)
T ss_pred EEe
Confidence 554
No 194
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.98 E-value=2.7e-09 Score=64.33 Aligned_cols=73 Identities=22% Similarity=0.421 Sum_probs=54.4
Q ss_pred CceeeeCCCcEEEEeE-EeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCE-EEEEEccc
Q psy13371 94 PDLHVDEGSTINLTCS-IKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSG-KYSCSPSN 171 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~-~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~n 171 (212)
....+.+|+.+.|.|. ..+.|.|. +.|+.++..... ...+.....+|. |.|.+++.+|+| .|.|.|.|
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~--i~W~~~~~~~i~---~~~Ri~~~~~Gn-----L~fs~v~~~D~g~~Y~C~a~~ 80 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLR--IYWMNSDLLHIT---QDERVSMGQNGN-----LYFANVEEQDSHPDYICHAHF 80 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCE--EEEECCCCcccc---ccccEEECCCce-----EEEEEEehhhCCCCeEEEEEc
Confidence 4567899999999997 57777777 999976644321 123444545554 999999999999 89999998
Q ss_pred CCeeE
Q psy13371 172 ADVAS 176 (212)
Q Consensus 172 ~~~~~ 176 (212)
.....
T Consensus 81 ~~~~~ 85 (95)
T cd05845 81 PGLRT 85 (95)
T ss_pred ccccc
Confidence 85433
No 195
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.98 E-value=4.5e-09 Score=62.82 Aligned_cols=70 Identities=21% Similarity=0.397 Sum_probs=50.7
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcc
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 170 (212)
..|....+.+|+.++|.|.+.+.+ |...+.|++++..+.. . ..... ..|.|.++..+|+|.|.|.+.
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~~~-~~~~i~W~~~~~~~~~----~---~~~~~-----~~L~I~~v~~~DsG~Y~C~a~ 72 (85)
T cd05754 6 EEPRSQEVRPGADVSFICRAKSKS-PAYTLVWTRVGGGLPS----R---AMDFN-----GILTIRNVQLSDAGTYVCTGS 72 (85)
T ss_pred cCCCceEEcCCCCEEEEEEcCCCC-CCcEEEEEECCCcCCC----c---ccccC-----CEEEECCCCHHHCEEEEEEEe
Confidence 345566789999999999987532 3345999998865311 1 01111 249999999999999999999
Q ss_pred cCC
Q psy13371 171 NAD 173 (212)
Q Consensus 171 n~~ 173 (212)
|..
T Consensus 73 n~~ 75 (85)
T cd05754 73 NML 75 (85)
T ss_pred ccC
Confidence 973
No 196
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.97 E-value=3.2e-09 Score=59.80 Aligned_cols=64 Identities=28% Similarity=0.548 Sum_probs=42.1
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
|+.++|.|.+... .+...+.|.++++..... ........+......|.|.++..+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~-~~~~~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSG-PPPTTVTWSKNGQSLPEG----STTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEES-SSTSEEEEEETTTTTSEE----EEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCC-CCCcEEEEEECCccccCc----ceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7889999999333 355569999988644211 111112222222224999999999999999985
No 197
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.96 E-value=1.2e-08 Score=61.80 Aligned_cols=82 Identities=17% Similarity=0.115 Sum_probs=53.8
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcceeeeecce------ee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIHILTVGSY------TY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~------~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|+|..... ...+|+|.|..+........+ .+ ...+|..+. +....+.+|.|.+++.+|+|.|+|.+.+
T Consensus 3 vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~-~~~~~d~sl~i~nv~~~D~G~Y~C~v~t 81 (96)
T cd05887 3 VTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFK-NYSLLDATIMLENVGFSDIGVYICKAVT 81 (96)
T ss_pred EEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEc-CCCCCccEEEEeCCCccccEEEEEEEEe
Confidence 4799999854 456999988643211111111 00 112566665 3556789999999999999999999988
Q ss_pred C--CceeEEEEEEE
Q psy13371 72 Q--PVRSFFVNLNV 83 (212)
Q Consensus 72 ~--~~~~~~~~l~v 83 (212)
. +..+....|.|
T Consensus 82 fP~G~~~~~~~l~~ 95 (96)
T cd05887 82 FPLGNTQSSTTVTV 95 (96)
T ss_pred CCCCCeeEEEEEEE
Confidence 5 44555555554
No 198
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.96 E-value=4.6e-09 Score=63.51 Aligned_cols=76 Identities=14% Similarity=0.261 Sum_probs=48.5
Q ss_pred eeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeC----------CCCceeEEee-cCceEEEEEEEeeeeecCCEEE
Q psy13371 97 HVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDS----------SRGGVSVITE-KGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 97 ~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~----------~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y 165 (212)
.+.+|+.++|.|.+.+.+.+. +.|+++++...... ....+..... ........|.|++++.+|+|.|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~--i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY 80 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQ--FHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTY 80 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcE--EEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEE
Confidence 567899999999998765555 99997653321100 0011111111 0011235699999999999999
Q ss_pred EEEcccCCe
Q psy13371 166 SCSPSNADV 174 (212)
Q Consensus 166 ~C~~~n~~~ 174 (212)
.|.+.|...
T Consensus 81 ~C~v~~~~~ 89 (94)
T cd07690 81 ICEVEDKKE 89 (94)
T ss_pred EEEECCccc
Confidence 999998743
No 199
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.96 E-value=5.2e-09 Score=62.26 Aligned_cols=57 Identities=25% Similarity=0.256 Sum_probs=41.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+ +.+.+.|++++. .+... +.|+.+. +..|.|.+++.+|+|.|+|.+.+.
T Consensus 14 v~L~C~~~~-~~~~i~W~~ng~--~i~~~------~~r~~~~------~~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 14 AELKCSPKS-NLARVVWKFDGK--VLTPE------SAKYLLY------RDGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred EEEEEECCC-CCCeEEEEECCE--ECCCC------CceEEEE------CCcEEEeCCCHHHCEEEEEEEEec
Confidence 468999865 678999999873 22211 1344432 236999999999999999999876
No 200
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.95 E-value=1.5e-08 Score=61.51 Aligned_cols=82 Identities=23% Similarity=0.348 Sum_probs=53.0
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcce--eeee----cceeeec--CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIH--ILTV----GSYTYTS--DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~--~~~~----~~~~~~~--~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
|.|.|..... ...+|+|.|..+.. .+.. .+..+.. .+|..... ....+.+|.|.+++.+|+|.|+|.+.+
T Consensus 3 vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~-~~~~d~sI~i~nvt~~D~G~Y~C~~~t 81 (96)
T cd05889 3 MKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLN-STREDMSLSFNNATEEDVGLYCCSLVT 81 (96)
T ss_pred EEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEec-CCCCccEEEEcCCCcccCEEEEEEEEe
Confidence 6799998754 46789999865311 1111 0111111 25666652 344678999999999999999999998
Q ss_pred CCceeEEEEEEE
Q psy13371 72 QPVRSFFVNLNV 83 (212)
Q Consensus 72 ~~~~~~~~~l~v 83 (212)
.+..+....+.|
T Consensus 82 ~P~g~~~~~i~~ 93 (96)
T cd05889 82 YPQGSWEKVIEV 93 (96)
T ss_pred CCCCCeEEEEEE
Confidence 654555444444
No 201
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.95 E-value=1.4e-08 Score=62.03 Aligned_cols=82 Identities=20% Similarity=0.282 Sum_probs=53.1
Q ss_pred CeeEeeeCCC-CC---ceEEEEeeCccee--e-eecc---eee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGL-LP---TRVSWIRHRDIHI--L-TVGS---YTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~-p~---~~v~W~~~~~~~~--~-~~~~---~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+... |. .+|+|.+..+... . .... ... ...+|..+. +...++++|.|.+++.+|+|.|.|+
T Consensus 3 v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~-~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 3 VVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFK-NPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred EEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEc-CCCCCcceEEEcCCccccCEEEEEE
Confidence 3699999853 21 2799988532111 1 1110 011 112677765 3456889999999999999999999
Q ss_pred ecCC--CceeEEEEEEE
Q psy13371 69 LSTQ--PVRSFFVNLNV 83 (212)
Q Consensus 69 ~~~~--~~~~~~~~l~v 83 (212)
+.+. +..+..+.|.|
T Consensus 82 v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 82 FATFPTGNRESQLNLTV 98 (99)
T ss_pred EEeCCCCCeEEEEEEEE
Confidence 9984 45566666665
No 202
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.94 E-value=1.9e-08 Score=62.78 Aligned_cols=83 Identities=17% Similarity=0.219 Sum_probs=52.6
Q ss_pred CeeEeeeCCCC------CceEEEEeeC--c--ce-eee-ecceee-ecC--CceEEEeeCCCCeEEEEEcccCCCCCEEE
Q psy13371 1 MLHQRKLKGLL------PTRVSWIRHR--D--IH-ILT-VGSYTY-TSD--QRFSAIHRREGDEWTLHIKWAQKRDAGVY 65 (212)
Q Consensus 1 ~~l~C~~~~~p------~~~v~W~~~~--~--~~-~~~-~~~~~~-~~~--~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y 65 (212)
+.|.|.+...+ .+.|.|+|.. . .. +.. .+.... ... .|+... ....++.+|+|.+++.+|+|.|
T Consensus 5 V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~~v~~sD~G~Y 83 (106)
T cd05714 5 VTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLY-PADPGDASLVITDLRLEDSGRY 83 (106)
T ss_pred EEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEee-CCCCCcceEEECCCCHHHCEEE
Confidence 46999988753 5799999973 1 11 111 111111 111 233222 2355789999999999999999
Q ss_pred EEEecCC-CceeEEEEEEEe
Q psy13371 66 ECQLSTQ-PVRSFFVNLNVV 84 (212)
Q Consensus 66 ~C~~~~~-~~~~~~~~l~v~ 84 (212)
.|.+.+. ......+.|.|.
T Consensus 84 ~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 84 RCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred EEEEEcCCCceEEEEEEEEE
Confidence 9999976 344666666664
No 203
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.94 E-value=1.6e-08 Score=63.68 Aligned_cols=72 Identities=11% Similarity=0.209 Sum_probs=49.3
Q ss_pred CeeEeeeCCC----CCceEEEEee-Ccce----eeee-cceeee-c----CCceEEEeeCCCCeEEEEEcccCCCCCEEE
Q psy13371 1 MLHQRKLKGL----LPTRVSWIRH-RDIH----ILTV-GSYTYT-S----DQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65 (212)
Q Consensus 1 ~~l~C~~~~~----p~~~v~W~~~-~~~~----~~~~-~~~~~~-~----~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y 65 (212)
+.|.|.++.. +...|.|.+. .... +... ++..+. . .+|..+..+...++.+|.|.+++.+|.|.|
T Consensus 16 v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv~~sD~G~Y 95 (116)
T cd05879 16 VTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNLDYTDNGTF 95 (116)
T ss_pred EEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccCCcccCEEE
Confidence 4699999774 3579999542 2111 1111 122221 1 258887766677899999999999999999
Q ss_pred EEEecCC
Q psy13371 66 ECQLSTQ 72 (212)
Q Consensus 66 ~C~~~~~ 72 (212)
+|.+.+.
T Consensus 96 ~C~v~n~ 102 (116)
T cd05879 96 TCDVKNP 102 (116)
T ss_pred EEEEEcC
Confidence 9999985
No 204
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.94 E-value=2.8e-08 Score=62.24 Aligned_cols=84 Identities=19% Similarity=0.253 Sum_probs=55.9
Q ss_pred CeeEeeeCCCC----------CceEEEEeeCcc-ee--e-eecceee---ecCCceEEEee-CCCCeEEEEEcccCCCCC
Q psy13371 1 MLHQRKLKGLL----------PTRVSWIRHRDI-HI--L-TVGSYTY---TSDQRFSAIHR-REGDEWTLHIKWAQKRDA 62 (212)
Q Consensus 1 ~~l~C~~~~~p----------~~~v~W~~~~~~-~~--~-~~~~~~~---~~~~r~~~~~~-~~~~~~~L~i~~~~~~d~ 62 (212)
+.|+|.+...+ ...|.|+|.... .. . ..+.... ...+|+++..+ ...++++|+|.+++.+|+
T Consensus 5 V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~sD~ 84 (110)
T cd05878 5 VLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRSSDS 84 (110)
T ss_pred EEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCChhhC
Confidence 47999997754 368999996421 11 1 1122211 11357777532 345778999999999999
Q ss_pred EEEEEEecCC-CceeEEEEEEEe
Q psy13371 63 GVYECQLSTQ-PVRSFFVNLNVV 84 (212)
Q Consensus 63 G~Y~C~~~~~-~~~~~~~~l~v~ 84 (212)
|.|.|.+... ...+..+.|.|.
T Consensus 85 G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 85 GVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred EEEEEEEEeCCCcceEEEEEEEE
Confidence 9999999875 456677777765
No 205
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.93 E-value=2.1e-08 Score=62.59 Aligned_cols=83 Identities=17% Similarity=0.113 Sum_probs=53.4
Q ss_pred CeeEeeeCCCC------CceEEEEeeCcce----e-eeecce--ee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEE
Q psy13371 1 MLHQRKLKGLL------PTRVSWIRHRDIH----I-LTVGSY--TY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65 (212)
Q Consensus 1 ~~l~C~~~~~p------~~~v~W~~~~~~~----~-~~~~~~--~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y 65 (212)
+.|.|.++..| ...|.|+|..... . ...... .. ...+|+.+.. ...++.+|+|.+++.+|+|.|
T Consensus 5 vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~-~~~~~~sL~I~~v~~~DsG~Y 83 (106)
T cd05877 5 VTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRR-AHDLDASLVITDLRLEDYGRY 83 (106)
T ss_pred EEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecC-CCCCcEEEEEccCChHHCEEE
Confidence 46999987653 4679999975311 1 111111 00 1135777643 335678999999999999999
Q ss_pred EEEecCC-CceeEEEEEEEe
Q psy13371 66 ECQLSTQ-PVRSFFVNLNVV 84 (212)
Q Consensus 66 ~C~~~~~-~~~~~~~~l~v~ 84 (212)
.|.+.++ +.....+.|.|.
T Consensus 84 ~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 84 RCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEEecccceEEEEEEEEE
Confidence 9999875 345555666654
No 206
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.93 E-value=1.3e-08 Score=61.48 Aligned_cols=74 Identities=20% Similarity=0.257 Sum_probs=47.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--ceeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--VRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~ 78 (212)
+.|.|.. +.|.|.+.|+|.++....... ...+.|+... +.+|.|.++.++|+|.|.|.+.+.. .....
T Consensus 14 v~L~C~~-~~p~p~v~Wykq~~g~~~~~~---~~~~~r~~~~------~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~ 83 (91)
T cd05871 14 TFLECLP-KSPQASVKWLFQRGGDQRKEE---VKTEERLIHT------ERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAK 83 (91)
T ss_pred EEEEEEC-CCCCceEEEEEECCCCCcccc---ccccccEEEe------cCeEEEeeCChhHCEEEEEEEEccCCeEEEEE
Confidence 4699996 578899999986532111100 0112344432 2469999999999999999998532 22334
Q ss_pred EEEEEe
Q psy13371 79 VNLNVV 84 (212)
Q Consensus 79 ~~l~v~ 84 (212)
+.|.|.
T Consensus 84 ~~l~v~ 89 (91)
T cd05871 84 YTLHVI 89 (91)
T ss_pred EEEEEe
Confidence 555554
No 207
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.93 E-value=1.9e-08 Score=61.77 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=51.4
Q ss_pred CeeEeeeCCCC---CceEEEEeeCcce--eee-e---cceeee--cCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLKGLL---PTRVSWIRHRDIH--ILT-V---GSYTYT--SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~~~p---~~~v~W~~~~~~~--~~~-~---~~~~~~--~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|.+...+ ...|.|+|..... .+. . .+.... ..+|..+.. ...++.+|+|.+++.+|+|.|.|.+
T Consensus 3 v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~-~~~~~~sL~I~~v~~~D~G~Y~C~v 81 (98)
T cd05718 3 VTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLN-SSLEDATISISNLRLEDEGNYICEF 81 (98)
T ss_pred EEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeC-CCCCceEEEEccCCcccCEEEEEEE
Confidence 46999998764 4589999976421 110 0 000011 134554442 1226789999999999999999998
Q ss_pred cCC--CceeEEEEEEE
Q psy13371 70 STQ--PVRSFFVNLNV 83 (212)
Q Consensus 70 ~~~--~~~~~~~~l~v 83 (212)
... +.....+.|.|
T Consensus 82 ~~~~~g~~~~~~~l~V 97 (98)
T cd05718 82 ATFPQGNRQKVTTLTV 97 (98)
T ss_pred EeCCCCcEEEEEEEEe
Confidence 753 44555555555
No 208
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.92 E-value=8.9e-09 Score=57.96 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=40.1
Q ss_pred CeeEeee-CCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKL-KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|.+ .+.+...+.|+|++.......... ...+.......|.|.+++.+|+|.|+|.+
T Consensus 4 v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~---------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 4 VTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTN---------RSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EEEEEEEEESSSTSEEEEEETTTTTSEEEEEE---------EEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred EEEEeecCCCCCCcEEEEEECCccccCcceeE---------eecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 4699999 777889999999885333221111 11001111114999999999999999985
No 209
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.92 E-value=1.5e-08 Score=59.08 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=43.5
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|+|...+. |.+.|.|||++. .+.........+.+++.. ..|++.-...+|.+.|+|++.|.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~--~l~~~~~~~~~~~~~t~~-------s~L~~~~~~~Ddg~~~~C~A~n~ 65 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRK--ELKGVISQQENGKTVSVS-------NTIRFPVDRKDDGAILSCEASHP 65 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCE--ECCCCcccccCCceEEEE-------EEEEEEeeeccCCcEEEEEEECh
Confidence 3689998886 899999999883 332111111112233333 36899889999999999999985
No 210
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.92 E-value=6.5e-09 Score=62.94 Aligned_cols=58 Identities=26% Similarity=0.403 Sum_probs=41.8
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccC-CCCCEEEEEEecCC
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQ-KRDAGVYECQLSTQ 72 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~~ 72 (212)
.|.|.+.|.|.|.+.|+|++. .+.... +.++... +..|.|.++. .+|+|.|+|.+.|.
T Consensus 23 ~l~C~~~g~p~p~i~W~k~~~-~l~~~~------~~~~~~~------~~~L~i~~~~~~~d~G~Y~C~a~N~ 81 (91)
T cd04967 23 SLNCRARGSPPPTYRWLMNGT-EIDDEP------DSRYSLV------GGNLVISNPSKAKDAGRYQCLASNI 81 (91)
T ss_pred EEEEeeeEcCCCEEEEEECCE-ECCCCC------CCCEEEE------CCEEEEecCCccCCCEEEEEEEEcC
Confidence 689999999999999999773 221111 2233332 2378888876 49999999999985
No 211
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.91 E-value=2.3e-08 Score=58.85 Aligned_cols=59 Identities=34% Similarity=0.680 Sum_probs=46.2
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..+.+|+.+.|.|.+.+.|. ..+.|++++..+.... + .+.+.++..+|.|.|+|.+.+.
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~--~~~~w~~~~~~~~~~~-----------~-----~~~~~~~~~~~~g~y~C~~~~~ 67 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPP--PQVQWYKNGSPINSSQ-----------N-----GLFIPNVSPEDSGNYTCRASNG 67 (80)
T ss_dssp SEEETTSEEEEEEEEESSSS--SEEEEEETTEEEEEES-----------S-----EEEESSEEGGGTEEEEEEEEET
T ss_pred eEEeCCCcEEEEEEEEcccc--eeeeeeeeeeeeeeee-----------e-----eeeeeeeccccCEEEEEEEEeC
Confidence 45889999999999986654 4599999887664211 1 1666888999999999999986
No 212
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.90 E-value=4.8e-08 Score=61.56 Aligned_cols=81 Identities=17% Similarity=0.297 Sum_probs=50.8
Q ss_pred CCCceeeeCCCcEEEEeEEeeCC--CCCceEEEEEcCe------EE-Eee---------CCCCceeEEeecCceEEEEEE
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSP--EPPAYIFWYHHDE------VI-SYD---------SSRGGVSVITEKGEVTTSYLL 153 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~--~p~~~v~W~~~~~------~~-~~~---------~~~~~~~~~~~~~~~~~~~l~ 153 (212)
.+....+..|+.+.|.|...... .+...+.|..... .+ .+. ....++.....+......++.
T Consensus 4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~ 83 (116)
T cd05879 4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV 83 (116)
T ss_pred ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence 34567889999999999997543 2345799954311 01 011 011112222222222335699
Q ss_pred EeeeeecCCEEEEEEcccC
Q psy13371 154 IQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 154 i~~~~~~d~g~y~C~~~n~ 172 (212)
|.+++.+|.|.|+|.+.|+
T Consensus 84 I~nv~~sD~G~Y~C~v~n~ 102 (116)
T cd05879 84 IHNLDYTDNGTFTCDVKNP 102 (116)
T ss_pred EccCCcccCEEEEEEEEcC
Confidence 9999999999999999986
No 213
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.90 E-value=1.1e-08 Score=60.35 Aligned_cols=69 Identities=23% Similarity=0.367 Sum_probs=48.3
Q ss_pred CeeEeeeCCCCC--ceEEEEeeCcce----eeeec--ceee---ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLKGLLP--TRVSWIRHRDIH----ILTVG--SYTY---TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~~~p~--~~v~W~~~~~~~----~~~~~--~~~~---~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|.+.+... ..+.|++..... +.... ...+ ...+|+.+..+...+..+|+|.+++.+|+|.|.|.+
T Consensus 2 v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 2 VTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred EEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEcC
Confidence 468999988765 389999876311 11111 1111 224788887655578899999999999999999964
No 214
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.90 E-value=9.4e-09 Score=57.31 Aligned_cols=61 Identities=33% Similarity=0.681 Sum_probs=44.2
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+|+.+.|.|.+.+.+.+. +.|++++..+. .. . ...... ..|.|.++...|.|.|+|.+.|.
T Consensus 1 ~g~~~~l~C~~~~~~~~~--v~W~~~~~~~~----~~-~-~~~~~~----~~L~i~~~~~~d~G~Y~C~~~n~ 61 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPN--ITWLKDGKPLP----ES-N-RLSASG----STLTIKSVSLEDSGEYTCVAENS 61 (63)
T ss_pred CCceEEEEeeCccCCCCe--EEEEECCEECC----CC-C-EEecCC----cEEEEeeCCcccCEEEEEEEecC
Confidence 478899999976665555 99999887663 11 1 111111 24999999999999999999875
No 215
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.89 E-value=1.5e-08 Score=61.54 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=46.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeee-c----ceeeec----CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTV-G----SYTYTS----DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~-~----~~~~~~----~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+...+...|.|++......... . ...... .+|+.+. .+++|+|.+++.+|+|.|.|.+..
T Consensus 4 VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~-----~~~sL~I~~l~~~DsG~Y~c~v~~ 78 (92)
T cd05741 4 VTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY-----PNGSLLIQNLTKEDSGTYTLQIIS 78 (92)
T ss_pred EEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc-----CCceEEEccCCchhcEEEEEEEEc
Confidence 4689999887788999999764221111 0 111111 2455554 338999999999999999999987
Q ss_pred CC
Q psy13371 72 QP 73 (212)
Q Consensus 72 ~~ 73 (212)
..
T Consensus 79 ~~ 80 (92)
T cd05741 79 TN 80 (92)
T ss_pred CC
Confidence 64
No 216
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.89 E-value=6.6e-08 Score=60.48 Aligned_cols=84 Identities=19% Similarity=0.263 Sum_probs=54.8
Q ss_pred CeeEeeeCCCC-----------CceEEEEeeC--------c-cee-eeecceee---ecCCceEEEeeC-CCCeEEEEEc
Q psy13371 1 MLHQRKLKGLL-----------PTRVSWIRHR--------D-IHI-LTVGSYTY---TSDQRFSAIHRR-EGDEWTLHIK 55 (212)
Q Consensus 1 ~~l~C~~~~~p-----------~~~v~W~~~~--------~-~~~-~~~~~~~~---~~~~r~~~~~~~-~~~~~~L~i~ 55 (212)
+.|+|.+.-.| .+.|.|.+-. . ..+ ...++... ...+|.++..+. ..++.+|+|.
T Consensus 5 v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL~i~ 84 (117)
T cd05901 5 VVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASLTIV 84 (117)
T ss_pred EEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEEEEc
Confidence 36899998443 3599999851 0 111 11222111 123677776432 4578999999
Q ss_pred ccCCCCCEEEEEEecCC-CceeEEEEEEEe
Q psy13371 56 WAQKRDAGVYECQLSTQ-PVRSFFVNLNVV 84 (212)
Q Consensus 56 ~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~ 84 (212)
+++.+|+|.|.|++..+ ...+..+.|.|.
T Consensus 85 ~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 85 KLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred ccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 99999999999999875 345566666654
No 217
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.89 E-value=2.7e-08 Score=62.02 Aligned_cols=84 Identities=18% Similarity=0.169 Sum_probs=54.9
Q ss_pred CeeEeeeCCCC-------CceEEEEeeCc----cee--e-eecceee---ecCCceEEEeeC-CCCeEEEEEcccCCCCC
Q psy13371 1 MLHQRKLKGLL-------PTRVSWIRHRD----IHI--L-TVGSYTY---TSDQRFSAIHRR-EGDEWTLHIKWAQKRDA 62 (212)
Q Consensus 1 ~~l~C~~~~~p-------~~~v~W~~~~~----~~~--~-~~~~~~~---~~~~r~~~~~~~-~~~~~~L~i~~~~~~d~ 62 (212)
+.|+|.++-.| .+.|.|.|... ... . ..+.... ...+|.++..+. ..++.+|+|.+++.+|+
T Consensus 5 v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~~D~ 84 (110)
T cd05902 5 VLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRYSDS 84 (110)
T ss_pred EEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCHHHC
Confidence 46999976432 47999998631 111 1 0111111 223677776432 45789999999999999
Q ss_pred EEEEEEecCC-CceeEEEEEEEe
Q psy13371 63 GVYECQLSTQ-PVRSFFVNLNVV 84 (212)
Q Consensus 63 G~Y~C~~~~~-~~~~~~~~l~v~ 84 (212)
|.|.|.+..+ ...+..+.|.|.
T Consensus 85 G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 85 GTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred EEEEEEEEECCcccEEEEEEEEE
Confidence 9999999875 345666667664
No 218
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.89 E-value=7.3e-09 Score=61.89 Aligned_cols=55 Identities=25% Similarity=0.226 Sum_probs=41.4
Q ss_pred CeeEeeeCC-CCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKG-LLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+ .|.+.+.|++++.. ++. +. ...+..|.|.+++.+|+|.|.|.+.|.
T Consensus 19 v~L~C~~~~~~~~~~i~W~~~~~~--~~~---------~~------~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 74 (85)
T cd05754 19 VSFICRAKSKSPAYTLVWTRVGGG--LPS---------RA------MDFNGILTIRNVQLSDAGTYVCTGSNM 74 (85)
T ss_pred EEEEEEcCCCCCCcEEEEEECCCc--CCC---------cc------cccCCEEEECCCCHHHCEEEEEEEecc
Confidence 368999975 68899999998742 111 10 112347999999999999999999885
No 219
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.89 E-value=2.3e-08 Score=58.27 Aligned_cols=63 Identities=24% Similarity=0.398 Sum_probs=45.2
Q ss_pred cEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc--eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 103 TINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE--VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 103 ~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.++|.|...+. .|.+.+.|+++++++..... ....+. ...+.|.+.....+|.+.|+|.|.|+
T Consensus 1 ~~~L~C~s~~s-kP~a~i~W~k~~~~l~~~~~------~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~ 65 (80)
T cd05885 1 EVELTCLSPRS-KPAATLRWYRDRKELKGVIS------QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHP 65 (80)
T ss_pred CEEEEEeCCCc-cCCCeEEEEECCEECCCCcc------cccCCceEEEEEEEEEEeeeccCCcEEEEEEECh
Confidence 36899998765 46667999999998842110 111221 23456999888889999999999997
No 220
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.89 E-value=2.2e-08 Score=60.42 Aligned_cols=68 Identities=18% Similarity=0.303 Sum_probs=44.0
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe--EEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE--VISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
....+|+.+.|.|.. +.|.|. +.|+++.. ..........+... .. ..|.|.+++.+|+|.|+|.+.+.
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~--v~Wykq~~g~~~~~~~~~~~r~~~-~~-----~~L~I~~~~~~DsG~Y~C~a~~~ 75 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQAS--VKWLFQRGGDQRKEEVKTEERLIH-TE-----RGLLLRSLQRSDAGVYTCTAVEH 75 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCce--EEEEEECCCCCccccccccccEEE-ec-----CeEEEeeCChhHCEEEEEEEEcc
Confidence 346789999999996 354454 99998532 21111011111211 11 23999999999999999999853
No 221
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.88 E-value=8.2e-08 Score=58.09 Aligned_cols=84 Identities=17% Similarity=0.284 Sum_probs=55.1
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCC----CCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSS----RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
.+..+.+|+++.|.|.+....... +.|++.+..+..... ...++...... ....+|.|++++.+|+|.|+|.+
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~--v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~-~~~~tL~I~~vq~~D~G~Y~Cqv 81 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSV--IQLLNPNRQTIYFRDVRPLKDSRFQLVNFS-SNELRVSLSNVSLSDEGRYFCQL 81 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccE--EEEEecCCcEEEecCccccCCcCEEEEeCC-CCEEEEEECcCCcccCEEEEEEE
Confidence 356789999999999998664444 889877755432111 11222222211 23446999999999999999999
Q ss_pred ccCCeeEEEEE
Q psy13371 170 SNADVASVYVH 180 (212)
Q Consensus 170 ~n~~~~~~~~~ 180 (212)
......+....
T Consensus 82 ~t~p~~~~~~~ 92 (95)
T cd05881 82 YTDPPQEAYTT 92 (95)
T ss_pred EcccCeEEEEE
Confidence 87644444333
No 222
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.87 E-value=6.5e-09 Score=61.68 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=40.2
Q ss_pred CeeEeeeCC-CCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKG-LLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
|.|.|.+.+ .+.+.+.|+|++. ... .......|.|.+++.+|+|.|+|.+.+.
T Consensus 17 vtL~C~~~~~~~~~~~~w~k~g~--~~~-----------------~~~~~~~l~I~~~~~~dsG~Y~C~~~~~ 70 (83)
T cd05753 17 LVLRCHGWKNKPVYKVTYYRDGK--AKK-----------------YSHSNSNLSIPQATLSDSGSYHCSGIIG 70 (83)
T ss_pred EEEEeeCCCCCcceEEEEEECCe--Ecc-----------------ccCCCceEEECccCHHHCEEEEEEEEeC
Confidence 579999864 5678899999773 111 0112347999999999999999999985
No 223
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.87 E-value=3.9e-09 Score=63.61 Aligned_cols=59 Identities=22% Similarity=0.375 Sum_probs=45.9
Q ss_pred CeeEee-eCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCE-EEEEEecCC
Q psy13371 1 MLHQRK-LKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAG-VYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~-~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~ 72 (212)
++|.|. ..|.|.|.|.|+++.... +. .+.|+.+. .++.|.|.+++.+|+| .|.|.+.+.
T Consensus 21 ~~L~C~pP~g~P~P~i~W~~~~~~~-i~-------~~~Ri~~~-----~~GnL~fs~v~~~D~g~~Y~C~a~~~ 81 (95)
T cd05845 21 VVLPCNPPKSAVPLRIYWMNSDLLH-IT-------QDERVSMG-----QNGNLYFANVEEQDSHPDYICHAHFP 81 (95)
T ss_pred EEEEecCCCCCCCCEEEEECCCCcc-cc-------ccccEEEC-----CCceEEEEEEehhhCCCCeEEEEEcc
Confidence 479997 799999999999765321 11 24566554 4579999999999999 799999985
No 224
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.85 E-value=2.4e-08 Score=62.15 Aligned_cols=73 Identities=22% Similarity=0.305 Sum_probs=51.8
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcc-e---eeeecce----eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDI-H---ILTVGSY----TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~-~---~~~~~~~----~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+.+. +...+.|+|.... . +...... .....+|+.+..+......+|+|.+++.+|+|.|.|.+.+
T Consensus 9 v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~ 88 (105)
T cd00099 9 VTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAVYYCAVSL 88 (105)
T ss_pred EEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEEEEEEEec
Confidence 4699999987 7889999996531 1 1111100 1122468887765444788999999999999999999987
Q ss_pred CC
Q psy13371 72 QP 73 (212)
Q Consensus 72 ~~ 73 (212)
.+
T Consensus 89 ~~ 90 (105)
T cd00099 89 SG 90 (105)
T ss_pred CC
Confidence 54
No 225
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.84 E-value=2.2e-08 Score=58.99 Aligned_cols=53 Identities=9% Similarity=0.116 Sum_probs=38.3
Q ss_pred CeeEeeeCCCCCc-eEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPT-RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|.|.| .|.|+|++. .+.. ++ ......|.|.++ .|+|.|.|.+.|.
T Consensus 16 v~l~C~a~G~P~P~~I~W~k~g~--~l~~---------~~------~~~~s~L~i~~~--~d~g~Y~C~A~N~ 69 (81)
T cd05749 16 FNLTCQAVGPPEPVEILWWQGGS--PLGD---------PP------APSPSVLNVPGL--NETSKFSCEAHNA 69 (81)
T ss_pred EEEEEEeeeecCCeEEEEEECCE--ECCC---------CC------CCCCCEEEEccc--cCCeEEEEEEEec
Confidence 3689999999999 799999873 2211 00 011236788776 5889999999996
No 226
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.83 E-value=5.8e-08 Score=61.56 Aligned_cols=72 Identities=15% Similarity=0.217 Sum_probs=46.6
Q ss_pred CeeEeeeCCCC----CceEEEEeeCcc-----eeeee-cceee-----ecCCceEEEeeCCCCeEEEEEcccCCCCCEEE
Q psy13371 1 MLHQRKLKGLL----PTRVSWIRHRDI-----HILTV-GSYTY-----TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65 (212)
Q Consensus 1 ~~l~C~~~~~p----~~~v~W~~~~~~-----~~~~~-~~~~~-----~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y 65 (212)
+.|.|.++... ...|.|++.... .+... ..... ...+|+.+..+...++++|+|.+++.+|+|.|
T Consensus 16 vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y 95 (116)
T cd05715 16 VRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNLQFTDNGTY 95 (116)
T ss_pred eEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeCCcccCEEE
Confidence 46999987643 257999875421 11111 11110 11245555544556779999999999999999
Q ss_pred EEEecCC
Q psy13371 66 ECQLSTQ 72 (212)
Q Consensus 66 ~C~~~~~ 72 (212)
.|.+.+.
T Consensus 96 ~C~v~~~ 102 (116)
T cd05715 96 TCDVKNP 102 (116)
T ss_pred EEEEEeC
Confidence 9999975
No 227
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.82 E-value=2.9e-08 Score=59.94 Aligned_cols=56 Identities=21% Similarity=0.232 Sum_probs=39.9
Q ss_pred eeEeeeCCC-----CCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 2 LHQRKLKGL-----LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 2 ~l~C~~~~~-----p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
.|.|...+. |.|.+.|+|++. .+... +.... .+..|.|.++..+|+|.|+|.+.+.
T Consensus 14 ~l~Cp~~~~~~~~~~~p~i~Wyk~~~--~i~~~--------~~~~~-----~~~~L~I~~v~~~DsG~YtC~~~n~ 74 (92)
T cd05757 14 KIVCPDLDDFKNENTLPPVQWYKDCK--LLEGD--------RKRFV-----KGSKLLIQNVTEEDAGNYTCKLTFT 74 (92)
T ss_pred EEECCChHHccCCCCCCcEEEeECCE--ECCCC--------ccEEe-----cCCEEEEeeCChhhCEEEEEEEEec
Confidence 588987542 578999999883 22211 11111 3348999999999999999999975
No 228
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.81 E-value=2.8e-08 Score=60.06 Aligned_cols=69 Identities=20% Similarity=0.321 Sum_probs=46.8
Q ss_pred eeeCCCcEEEEeEE-eeC--CCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 97 HVDEGSTINLTCSI-KYS--PEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 97 ~~~~g~~~~l~C~~-~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.+..|....|.|+- .+. +.+.+.+.|++++.++.... .+.....+. +.|.|.++..+|+|.|+|.+.+.
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~---~~~~~~~~~----~~L~I~~v~~~D~G~YtC~~~~~ 77 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDN---EKFYSLKGS----TYLHIIDVSLNDSGYYTCKLQFT 77 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCC---cceEecCCC----CEEEEEEcChhhCEEEEEEEEEe
Confidence 45678899999973 222 33444599999998774221 111111111 24999999999999999999986
No 229
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.81 E-value=6.1e-08 Score=61.25 Aligned_cols=72 Identities=14% Similarity=0.116 Sum_probs=45.5
Q ss_pred CeeEeeeCCCC----CceEEEEeeC---cc--eeeeecc-eeeecC----CceEEEeeCCCCeEEEEEcccCCCCCEEEE
Q psy13371 1 MLHQRKLKGLL----PTRVSWIRHR---DI--HILTVGS-YTYTSD----QRFSAIHRREGDEWTLHIKWAQKRDAGVYE 66 (212)
Q Consensus 1 ~~l~C~~~~~p----~~~v~W~~~~---~~--~~~~~~~-~~~~~~----~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 66 (212)
+.|.|.++..+ ...|.|++.. .. .+..... .....+ +|+.+..+...++.+|+|.+++.+|+|.|+
T Consensus 16 v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~ 95 (115)
T cd05880 16 VRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQPTDNGTYT 95 (115)
T ss_pred EEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCChhhCEEEE
Confidence 36899987543 3579998632 11 1111111 111112 355444445567889999999999999999
Q ss_pred EEecCC
Q psy13371 67 CQLSTQ 72 (212)
Q Consensus 67 C~~~~~ 72 (212)
|.+.+.
T Consensus 96 C~v~~~ 101 (115)
T cd05880 96 CQVKNP 101 (115)
T ss_pred EEEEeC
Confidence 999975
No 230
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.81 E-value=4.6e-08 Score=58.43 Aligned_cols=79 Identities=18% Similarity=0.111 Sum_probs=46.6
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~ 77 (212)
+.|.|.+.+.+ ...+.|.+++......... ...+.... ........|.|.+++.+|+|.|+|.+.+. +....
T Consensus 4 ~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~----~~~~~~~~-~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~ 78 (86)
T cd05862 4 LVLNCTARTELNVGIDFQWDYPGKKEQRAKSV----SENRRSLQ-EHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKN 78 (86)
T ss_pred EEEEEEEEeCCCCcEEEEEEcCCcccccceec----cccccccc-ccceeeeEEEEecCCcccCEEEEEEEeecceEecc
Confidence 36899998765 5688998876422110000 00011010 01123457999999999999999999985 33344
Q ss_pred EEEEEEe
Q psy13371 78 FVNLNVV 84 (212)
Q Consensus 78 ~~~l~v~ 84 (212)
...|.|.
T Consensus 79 ~t~~~V~ 85 (86)
T cd05862 79 STIVIVH 85 (86)
T ss_pred cEEEEEe
Confidence 4455543
No 231
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.80 E-value=6.7e-08 Score=59.19 Aligned_cols=82 Identities=21% Similarity=0.171 Sum_probs=50.6
Q ss_pred CeeEeeeCCCCC-ceEEEEeeCcce---eeee---cceee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLP-TRVSWIRHRDIH---ILTV---GSYTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~-~~v~W~~~~~~~---~~~~---~~~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|....... ..|.|+|..+.. +... ..... ...+|+... ....++.+|+|.+++.+|+|.|.|.+..
T Consensus 4 vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~nv~~~D~G~Y~C~~~~ 82 (97)
T cd05846 4 VTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSIT-SLGLNSTSITIWNVTLEDEGCYKCIFNT 82 (97)
T ss_pred EEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEc-CCCCCccEEEEeCCceeeeEEEEEEEEe
Confidence 479999776543 479999864321 1111 11111 112344443 2455678999999999999999999987
Q ss_pred CC--ceeEEEEEEE
Q psy13371 72 QP--VRSFFVNLNV 83 (212)
Q Consensus 72 ~~--~~~~~~~l~v 83 (212)
.+ ..+..+.|+|
T Consensus 83 ~p~g~~~~~~~L~v 96 (97)
T cd05846 83 FPDGSKSGTMCLTV 96 (97)
T ss_pred CCCCCeeeEEEEEE
Confidence 53 4444555554
No 232
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.79 E-value=8.5e-08 Score=56.81 Aligned_cols=65 Identities=26% Similarity=0.502 Sum_probs=42.9
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc--eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE--VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+.|.|.+.+. .|.+.+.|+++++++.... . ......++. ...+.|.+.....+|.|.|+|.|.|.
T Consensus 2 ~~L~C~v~g~-~P~~~v~W~~~g~~l~~~~--~-~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~ 68 (82)
T cd05759 2 YNLTCRARGA-KPAAEIIWFRDGEVLDGAT--Y-SKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNE 68 (82)
T ss_pred EEEEEEEeCc-cCCCEEEEEECCEEccCce--e-eeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCc
Confidence 6899999875 2334599999998774211 1 111112222 23456888777778889999999986
No 233
>smart00409 IG Immunoglobulin.
Probab=98.79 E-value=3.5e-07 Score=54.10 Aligned_cols=70 Identities=30% Similarity=0.703 Sum_probs=49.9
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEc-CeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHH-DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
...+..|+.+.|.|.+.+. +...+.|+++ +..+. ............ ...|.|.++..+|+|.|.|.+.+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~~~~v~----~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~v~~~ 73 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGS--PPPEVTWYKQGGKLLA----ESGRFSVSRSGS--NSTLTISNVTPEDSGTYTCAATNS 73 (86)
T ss_pred cEEEeCCCeEEEEEEEccC--CCCeEEEEECCCEEcC----CCCcEEEEEcCC--eeEEEEEeeccccCeEEEEEEEcC
Confidence 4567889999999999876 3345999998 65553 111222222221 346999999999999999999976
No 234
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.79 E-value=3.5e-07 Score=54.10 Aligned_cols=70 Identities=30% Similarity=0.703 Sum_probs=49.9
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEc-CeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHH-DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
...+..|+.+.|.|.+.+. +...+.|+++ +..+. ............ ...|.|.++..+|+|.|.|.+.+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~~~~v~----~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~v~~~ 73 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGS--PPPEVTWYKQGGKLLA----ESGRFSVSRSGS--NSTLTISNVTPEDSGTYTCAATNS 73 (86)
T ss_pred cEEEeCCCeEEEEEEEccC--CCCeEEEEECCCEEcC----CCCcEEEEEcCC--eeEEEEEeeccccCeEEEEEEEcC
Confidence 4567889999999999876 3345999998 65553 111222222221 346999999999999999999976
No 235
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.78 E-value=9.1e-08 Score=56.69 Aligned_cols=63 Identities=17% Similarity=0.332 Sum_probs=40.3
Q ss_pred CeeEeeeCC-CCCceEEEEeeCcceeeeecce--eeecCC-ceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKG-LLPTRVSWIRHRDIHILTVGSY--TYTSDQ-RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~--~~~~~~-r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.| .|.+.|.|+|++. .+..... ....++ .+.. ...|.|.....+|.|.|+|.+.+.
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~--~l~~~~~~~~~~~~~~~~~~-------~s~L~i~~~~~~~~~~y~C~a~n~ 68 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGE--VLDGATYSKELLKDGKRETT-------VSTLPITPSDHDTGRTFTCRARNE 68 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCE--EccCceeeeeEecCCCeEEE-------EEEEEEeCceecCCCEEEEEEcCc
Confidence 369999998 5889999999773 2221111 000111 1111 125778777778889999999985
No 236
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.78 E-value=7.3e-08 Score=59.18 Aligned_cols=73 Identities=16% Similarity=0.217 Sum_probs=51.3
Q ss_pred CeeEeeeCCC-CCceEEEEeeCccee---eee-cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIHI---LTV-GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~~---~~~-~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
+.|.|..... +...+.|+|...... +.. ........+|+.+..+...+..+|+|.+++.+|+|.|.|.+...+
T Consensus 10 vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 10 VTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGVGDDG 87 (98)
T ss_pred EEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEcccCC
Confidence 4689998763 567899999764221 110 111112247888875556678899999999999999999998754
No 237
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.78 E-value=4.8e-08 Score=61.23 Aligned_cols=80 Identities=31% Similarity=0.461 Sum_probs=52.0
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe---E---EEeeC----CCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE---V---ISYDS----SRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~---~---~~~~~----~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
..|....+.+|++++|.|.+...+.+ .+.|++... + +.... ....+.............|.|.+++.+
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~--~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~ 80 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFY--YLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLS 80 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCcc--EEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHH
Confidence 34556789999999999999765334 489998642 1 11111 112233222222223456999999999
Q ss_pred CCEEEEEEcccC
Q psy13371 161 DSGKYSCSPSNA 172 (212)
Q Consensus 161 d~g~y~C~~~n~ 172 (212)
|+|.|.|.+.+.
T Consensus 81 DsG~Y~C~~~~~ 92 (109)
T cd04983 81 DSAVYFCALSES 92 (109)
T ss_pred HCEEEEEEEecC
Confidence 999999998865
No 238
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.78 E-value=6.3e-08 Score=61.43 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=50.0
Q ss_pred CeeEeeeCC--CCCceEEEEeeCcce----eeeec---cee---eecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKG--LLPTRVSWIRHRDIH----ILTVG---SYT---YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~--~p~~~v~W~~~~~~~----~~~~~---~~~---~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+ .+.+.+.|+|..... +.... ... ....+|+.+..+.......|+|.+++.+|+|.|.|.
T Consensus 16 v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 95 (116)
T cd04982 16 VTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKEDSATYYCA 95 (116)
T ss_pred EEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHHHCEEEEEE
Confidence 468999988 678899999975321 11111 101 112478888765444678999999999999999999
Q ss_pred ecC
Q psy13371 69 LST 71 (212)
Q Consensus 69 ~~~ 71 (212)
+..
T Consensus 96 ~~~ 98 (116)
T cd04982 96 YWE 98 (116)
T ss_pred Eec
Confidence 865
No 239
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.77 E-value=2.6e-08 Score=55.44 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=42.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+.|.+.+.|++++. ... . +... ......|.|.+++.+|+|.|.|.+.+.
T Consensus 5 ~~l~C~~~~~~~~~v~W~~~~~--~~~-~--------~~~~----~~~~~~L~i~~~~~~d~G~Y~C~~~n~ 61 (63)
T smart00408 5 VTLTCPAEGDPVPNITWLKDGK--PLP-E--------SNRL----SASGSTLTIKSVSLEDSGEYTCVAENS 61 (63)
T ss_pred EEEEeeCccCCCCeEEEEECCE--ECC-C--------CCEE----ecCCcEEEEeeCCcccCEEEEEEEecC
Confidence 3689999999999999999763 221 0 1111 123458999999999999999999764
No 240
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.77 E-value=3e-08 Score=70.06 Aligned_cols=59 Identities=22% Similarity=0.353 Sum_probs=43.2
Q ss_pred CeeEeeeCC-----CCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKG-----LLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~-----~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+ .|.|.+.|+|++. .+.. ++|+.+.. ++..|.|.+++.+|+|.|+|.+...
T Consensus 147 v~L~C~~~~~~~~~~p~p~I~WyKng~-~l~~--------~~r~~~~~----~~~~L~I~~V~~~DsG~YtC~a~~~ 210 (227)
T PHA02826 147 SKLHCYGTDGISSTFKDYTLTWYKNGN-IVLY--------TDRIQLRN----NNSTLVIKSATHDDSGIYTCNLRFN 210 (227)
T ss_pred EEEEeeCCCCccccCCCceEEEEECCE-ECCC--------CCCEEEeC----CCCEEEECcCCHHhCEEEEEEEEEe
Confidence 368999863 4679999999873 2221 23555431 3348999999999999999999863
No 241
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.76 E-value=2.1e-07 Score=55.09 Aligned_cols=62 Identities=24% Similarity=0.459 Sum_probs=46.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+.+.+.+.|+++++..+. .+.++.... ......|.|.+++.+|+|.|.|.+.+.
T Consensus 12 ~~l~C~~~~~~~~~~~W~~~~~~~v~--------~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~v~~~ 73 (86)
T smart00410 12 VTLSCEVSGSPPPEVTWYKQGGKLLA--------ESGRFSVSR--SGSNSTLTISNVTPEDSGTYTCAATNS 73 (86)
T ss_pred EEEEEEEccCCCCeEEEEECCCEEcC--------CCCcEEEEE--cCCeeEEEEEeeccccCeEEEEEEEcC
Confidence 36899999998999999997322222 234555542 222568999999999999999999965
No 242
>smart00409 IG Immunoglobulin.
Probab=98.76 E-value=2.1e-07 Score=55.09 Aligned_cols=62 Identities=24% Similarity=0.459 Sum_probs=46.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+.+.+.+.|+++++..+. .+.++.... ......|.|.+++.+|+|.|.|.+.+.
T Consensus 12 ~~l~C~~~~~~~~~~~W~~~~~~~v~--------~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~v~~~ 73 (86)
T smart00409 12 VTLSCEVSGSPPPEVTWYKQGGKLLA--------ESGRFSVSR--SGSNSTLTISNVTPEDSGTYTCAATNS 73 (86)
T ss_pred EEEEEEEccCCCCeEEEEECCCEEcC--------CCCcEEEEE--cCCeeEEEEEeeccccCeEEEEEEEcC
Confidence 36899999998999999997322222 234555542 222568999999999999999999965
No 243
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.75 E-value=1.1e-07 Score=57.81 Aligned_cols=74 Identities=20% Similarity=0.351 Sum_probs=48.0
Q ss_pred eeeeCCCcEEEEeEEee-----C----CCCCceEEEEEcCeEEEeeCCCCce-eEEeecCceEEEEEEEeeeeecCCEEE
Q psy13371 96 LHVDEGSTINLTCSIKY-----S----PEPPAYIFWYHHDEVISYDSSRGGV-SVITEKGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~-----~----~~p~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y 165 (212)
..+.+|+.+.|.|.... + ......+.|++++.......+.... ......+ ..|.|.++..+|+|.|
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~----~~Lwf~Pa~~eDSG~Y 85 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEE----DSIWFRPAELQDSGLY 85 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeC----CEEEEEeCChhhCeEE
Confidence 46789999999999721 0 1123358999997544322211000 1122222 2499999999999999
Q ss_pred EEEcccCC
Q psy13371 166 SCSPSNAD 173 (212)
Q Consensus 166 ~C~~~n~~ 173 (212)
+|.+.|+.
T Consensus 86 ~C~~rN~t 93 (104)
T cd05896 86 TCVLRNST 93 (104)
T ss_pred EEEECCCC
Confidence 99999984
No 244
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.74 E-value=2.2e-08 Score=60.48 Aligned_cols=61 Identities=16% Similarity=0.180 Sum_probs=43.4
Q ss_pred CeeEeee-CCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKL-KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
.+|.|.. .+.|.+.+.|++++...... .++|..+. ..++.|.|.+++.+|+|.|.|.+.+.
T Consensus 21 ~~L~C~pP~g~P~p~~~W~k~~~~~~~~-------~d~r~~~~----~~~G~L~fs~v~~~D~g~Y~C~A~n~ 82 (96)
T cd05727 21 VVLFCDPPPHYPDLSYRWLLNEFPNFIP-------EDGRRFVS----QTNGNLYIAKVEASDRGNYSCFVSSP 82 (96)
T ss_pred EEEeeCCCCCCCCCEEEEEECCcccccc-------cCCCeEEe----CCCCcEEEeecCHhhCceeEEEEEec
Confidence 3689964 55699999999986311111 13333332 24679999999999999999999985
No 245
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.74 E-value=8e-08 Score=60.33 Aligned_cols=70 Identities=23% Similarity=0.251 Sum_probs=48.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeec--cee---eecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVG--SYT---YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~--~~~---~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+.+ +.+.+.|+|..... +.... ... ...++|+....+ ......|+|.+++.+|+|.|.|.+..
T Consensus 16 v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~~~~~Dsg~Y~Ca~~~ 93 (110)
T cd05899 16 VTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRP-SLTRSSLTIKSAEPEDSAVYLCASSL 93 (110)
T ss_pred EEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECc-CCCccEEEECCCChhhCEEEEEEeeC
Confidence 368999988 77899999976421 11111 000 112467877642 23678899999999999999999876
Q ss_pred C
Q psy13371 72 Q 72 (212)
Q Consensus 72 ~ 72 (212)
.
T Consensus 94 ~ 94 (110)
T cd05899 94 G 94 (110)
T ss_pred C
Confidence 3
No 246
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.72 E-value=8.8e-08 Score=60.14 Aligned_cols=78 Identities=26% Similarity=0.390 Sum_probs=50.9
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe--EE---EeeC---------CCCceeEEeecCceEEEEEEEee
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE--VI---SYDS---------SRGGVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~--~~---~~~~---------~~~~~~~~~~~~~~~~~~l~i~~ 156 (212)
+.|....+.+|+.++|.|...+ +.+ .+.|++... .+ .... ....+........ ....|.|.+
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~--~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~L~I~~ 78 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHD--NMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSL-TRSSLTIKS 78 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCC--EEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCC-CccEEEECC
Confidence 4566778999999999999876 334 499998642 11 1111 0111222222211 345699999
Q ss_pred eeecCCEEEEEEcccC
Q psy13371 157 AELKDSGKYSCSPSNA 172 (212)
Q Consensus 157 ~~~~d~g~y~C~~~n~ 172 (212)
++.+|+|.|.|.+.+.
T Consensus 79 ~~~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 79 AEPEDSAVYLCASSLG 94 (110)
T ss_pred CChhhCEEEEEEeeCC
Confidence 9999999999998764
No 247
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.72 E-value=2.9e-07 Score=57.98 Aligned_cols=72 Identities=25% Similarity=0.289 Sum_probs=51.9
Q ss_pred CeeEeeeC-CCCCceEEEEeeCcc----eee-eec-----ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLK-GLLPTRVSWIRHRDI----HIL-TVG-----SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~-~~p~~~v~W~~~~~~----~~~-~~~-----~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|... ......+.|++.... .+. ... .......+|+.+..+....+.+|+|.+++.+|+|.|.|.+
T Consensus 19 v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v 98 (114)
T PF07686_consen 19 VTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQV 98 (114)
T ss_dssp EEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGGEEEEEEEE
T ss_pred EEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCcCEEEEEEE
Confidence 46899999 567789999996541 111 001 1111224688887666778999999999999999999999
Q ss_pred cCC
Q psy13371 70 STQ 72 (212)
Q Consensus 70 ~~~ 72 (212)
...
T Consensus 99 ~~~ 101 (114)
T PF07686_consen 99 STS 101 (114)
T ss_dssp EES
T ss_pred EEC
Confidence 875
No 248
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.72 E-value=1.8e-07 Score=55.25 Aligned_cols=65 Identities=22% Similarity=0.403 Sum_probs=49.5
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
...+..|+++.|.|...+. .+.+.|.+++..+..+ .+......| |.|.+++.+|+|.|.|.+...
T Consensus 5 ~~tv~~g~~v~L~C~~~s~---~A~v~W~~ng~~l~~~----~r~~~~~~G------LlI~~~~~~dsG~Y~C~s~E~ 69 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN---LASPVWLFNGTPLNAQ----FSYRVGTDG------LLILVTSPEHSGTYRCYSEEE 69 (85)
T ss_pred EEEEecCCCEEEECCCCCC---CccEEEEECCcccCCC----cceEEeCCC------CEEEECCHhhCEEEEEEEecC
Confidence 4578899999999998754 3349999999987321 233444444 788899999999999998744
No 249
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.70 E-value=1.7e-07 Score=57.52 Aligned_cols=69 Identities=22% Similarity=0.215 Sum_probs=47.7
Q ss_pred CeeEeeeCCC--CCceEEEEeeCccee----eeecc-eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHI----LTVGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~----~~~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+++. ....+.|+|...... ..... ......+|+.... .....+|+|.+++.+|+|.|.|.+.+
T Consensus 9 v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~--~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 84 (98)
T cd04984 9 VTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSK--SGNTASLTISGAQTEDEADYYCQVWD 84 (98)
T ss_pred EEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEc--cCCEEEEEECCCChhhCEEEEEEEcc
Confidence 4689999876 567899999775221 11111 0001145888763 44778899999999999999999865
No 250
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.69 E-value=5.2e-08 Score=59.44 Aligned_cols=74 Identities=16% Similarity=0.328 Sum_probs=49.1
Q ss_pred eCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 99 ~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
..|+.+.|.|.+.+..++.+.+.|++++..+...... .......++. ...+.|.+......+.+.|+|.+.|..
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~-~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~ 85 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTT-TPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHES 85 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceec-cccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCC
Confidence 4688999999999885445679999999877432210 1112222332 234556666555669999999999873
No 251
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.69 E-value=2.6e-07 Score=57.15 Aligned_cols=67 Identities=18% Similarity=0.124 Sum_probs=43.1
Q ss_pred eeEeeeCCCCCceEEEEeeCcc----eeeee-cc-eee----ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDI----HILTV-GS-YTY----TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~----~~~~~-~~-~~~----~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
.|.|.....+...+.|+|.... .+... .. ... ...+|..+. .+++|.|++++.+|+|.|+|.+.+
T Consensus 17 ~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~-----~ngSL~I~~v~~~D~G~Y~~~v~~ 91 (105)
T cd05774 17 LLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIY-----PNGSLLIQNVTQKDTGFYTLQTIT 91 (105)
T ss_pred EEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEe-----CCCcEEEecCCcccCEEEEEEEEe
Confidence 5777654444559999996421 11111 10 000 123566665 466999999999999999999988
Q ss_pred CC
Q psy13371 72 QP 73 (212)
Q Consensus 72 ~~ 73 (212)
..
T Consensus 92 ~~ 93 (105)
T cd05774 92 TN 93 (105)
T ss_pred CC
Confidence 64
No 252
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.69 E-value=1.2e-07 Score=60.19 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=50.7
Q ss_pred CeeEeeeCCC-CCceEEEEeeCccee----eeec-ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIHI----LTVG-SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~~----~~~~-~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+++. ....+.|+|...... .... ......++|+.+..+...++.+|+|.+++.+|+|.|.|.+...
T Consensus 17 v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~ 94 (116)
T cd07706 17 VTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYFCALSTL 94 (116)
T ss_pred EEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEECC
Confidence 4699998865 567899999754221 1111 1111224789887655667899999999999999999998753
No 253
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.69 E-value=5.2e-07 Score=52.80 Aligned_cols=65 Identities=23% Similarity=0.351 Sum_probs=45.8
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
++|.|.+.+. .|.+.+.|++++.++..... .......+....++|.+.....+|...|+|.|.|+
T Consensus 2 ~~L~C~s~gS-kP~A~I~W~k~~~~l~~~~~---~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~ 66 (82)
T cd05883 2 IELNCTAMAS-KPAATIRWFKGNKELTGKST---VEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHP 66 (82)
T ss_pred EEEEEEecCC-CCCCEEEEEECCEECcCccc---ceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCc
Confidence 6899999866 68788999999988842210 01112234446677888666667777999999987
No 254
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.66 E-value=6.8e-08 Score=58.40 Aligned_cols=59 Identities=20% Similarity=0.365 Sum_probs=39.2
Q ss_pred eeEee-eC----CCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 2 LHQRK-LK----GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 2 ~l~C~-~~----~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
.|.|. .. ..+.|.+.|+|++ ..+... +.++.... +...|.|.++..+|+|.|+|.+.+.
T Consensus 14 ~l~Cp~~~~f~~~~~~~~v~WYKd~--~~l~~~------~~~~~~~~----~~~~L~I~~v~~~D~G~YtC~~~~~ 77 (95)
T cd05897 14 KLVCPDLSDFTINRTDVELQWYKDS--VLLDKD------NEKFYSLK----GSTYLHIIDVSLNDSGYYTCKLQFT 77 (95)
T ss_pred EEECCCHHHcccCCCCCcEEEccCC--EECcCC------CcceEecC----CCCEEEEEEcChhhCEEEEEEEEEe
Confidence 57786 22 3367899999988 333211 11222211 2336999999999999999999874
No 255
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.65 E-value=1.7e-07 Score=58.43 Aligned_cols=69 Identities=23% Similarity=0.349 Sum_probs=47.0
Q ss_pred CeeEeeeCCCC-CceEEEEeeCcce----eeeecce-eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLL-PTRVSWIRHRDIH----ILTVGSY-TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p-~~~v~W~~~~~~~----~~~~~~~-~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+.+.. ...+.|+|..... +...... .....+|+... .......|+|.+++.+|+|.|.|.+.+
T Consensus 18 v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~--~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~ 92 (106)
T cd04980 18 ATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGS--GSGTDFTLTISRVEPEDAAVYYCQQYG 92 (106)
T ss_pred EEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEe--ccCCEEEEEECCCChHHCEEEEEEEeC
Confidence 46999998765 6789999876321 1111111 11113577765 345678899999999999999999865
No 256
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.63 E-value=4e-07 Score=56.82 Aligned_cols=71 Identities=28% Similarity=0.491 Sum_probs=48.2
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcce----e---eee---cceeee---cCCceEEEeeCCCCeEEEEEcccCCCCCEEEE
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIH----I---LTV---GSYTYT---SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYE 66 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~----~---~~~---~~~~~~---~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 66 (212)
+.|.|.+.+. ....+.|+|..+.. + ... +..... .++|+.+..........|+|.+++.+|+|.|.
T Consensus 9 vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~Yy 88 (107)
T cd07700 9 VKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKPEDSGTYF 88 (107)
T ss_pred EEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCHHHCEEEE
Confidence 4699999764 45689999987531 0 111 111111 14678775445566788999999999999999
Q ss_pred EEecC
Q psy13371 67 CQLST 71 (212)
Q Consensus 67 C~~~~ 71 (212)
|....
T Consensus 89 Ca~~~ 93 (107)
T cd07700 89 CMTVG 93 (107)
T ss_pred EeEcC
Confidence 99764
No 257
>KOG3515|consensus
Probab=98.62 E-value=6.9e-07 Score=72.02 Aligned_cols=156 Identities=15% Similarity=0.203 Sum_probs=99.2
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC--CceeE
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ--PVRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~~~~ 77 (212)
+-|.|.+.+. |.+.+.|++...... +|+... .+..|......++..+.|.|++.+. .....
T Consensus 25 v~l~C~v~~~pp~~~~eW~h~~~~~~-----------~~~~~~-----~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~ 88 (741)
T KOG3515|consen 25 VPLPCRVNSNPPEIDVEWYHSTSGEH-----------GRYATI-----ADPTLVTTGDVRDTVAELNCRAFNSVGMPSRC 88 (741)
T ss_pred ceeeeecCCCCCCcceEEEecCcccc-----------cccccc-----cCCceeeecchhhhhhhhhhhhcccccCceec
Confidence 4689999987 568999999774221 122222 2336667777788888999999985 23334
Q ss_pred EEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeE-EeecCc-eEEEEEEEe
Q psy13371 78 FVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSV-ITEKGE-VTTSYLLIQ 155 (212)
Q Consensus 78 ~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~l~i~ 155 (212)
...+.+.+++.-...........+..+.+.|.+.....|..++.|..+..............- ....+. ...+.+.+.
T Consensus 89 ~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~ 168 (741)
T KOG3515|consen 89 PMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQT 168 (741)
T ss_pred ceeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeE
Confidence 445566665543322233345678889999977666567667999988765543322111111 011111 123458888
Q ss_pred eeeecCCEEEEEEcccC
Q psy13371 156 QAELKDSGKYSCSPSNA 172 (212)
Q Consensus 156 ~~~~~d~g~y~C~~~n~ 172 (212)
..+.++.|.|+|.+.|.
T Consensus 169 v~Rka~~g~~tC~A~nr 185 (741)
T KOG3515|consen 169 VSRKADNGNYTCPANNR 185 (741)
T ss_pred EEEecCCceeEcccccc
Confidence 88899999999999984
No 258
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.62 E-value=8.6e-07 Score=56.17 Aligned_cols=81 Identities=19% Similarity=0.364 Sum_probs=49.6
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCC--CCceEEEEEcCe------EEE-eeCCC-----C----ceeEEeecCceEEEEEE
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPE--PPAYIFWYHHDE------VIS-YDSSR-----G----GVSVITEKGEVTTSYLL 153 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~--p~~~v~W~~~~~------~~~-~~~~~-----~----~~~~~~~~~~~~~~~l~ 153 (212)
.|....+..|+.++|.|....... ....+.|++... .+. +.... . .+.....+.......|.
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 456678899999999999864321 224589986431 111 11100 0 11111111111235699
Q ss_pred EeeeeecCCEEEEEEcccC
Q psy13371 154 IQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 154 i~~~~~~d~g~y~C~~~n~ 172 (212)
|.+++.+|+|.|.|.+.|.
T Consensus 84 I~~v~~~D~G~Y~C~v~~~ 102 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNP 102 (116)
T ss_pred EeeCCcccCEEEEEEEEeC
Confidence 9999999999999999975
No 259
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.62 E-value=4.2e-07 Score=57.62 Aligned_cols=81 Identities=21% Similarity=0.344 Sum_probs=50.6
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eE----EEeeCC---------CCceeEEeecCceEEEEEEEe
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EV----ISYDSS---------RGGVSVITEKGEVTTSYLLIQ 155 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~----~~~~~~---------~~~~~~~~~~~~~~~~~l~i~ 155 (212)
+.|....+.+|+.++|.|.+.+...+...+.|++.. .. +..... ...+.............|.|.
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 82 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ 82 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence 345667788999999999987621233349999863 21 111110 112222222222134569999
Q ss_pred eeeecCCEEEEEEccc
Q psy13371 156 QAELKDSGKYSCSPSN 171 (212)
Q Consensus 156 ~~~~~d~g~y~C~~~n 171 (212)
+++.+|+|.|.|.+..
T Consensus 83 ~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 83 NLEKEDSATYYCAYWE 98 (116)
T ss_pred ECCHHHCEEEEEEEec
Confidence 9999999999999864
No 260
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.60 E-value=2.6e-07 Score=54.27 Aligned_cols=61 Identities=23% Similarity=0.383 Sum_probs=43.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--ceeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--VRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~ 78 (212)
+.|.|.+.+.|.+.+.|++++ ..+.... + .+.+.++..+|.|.|+|.+.+.. ..+..
T Consensus 17 ~~l~C~~~~~p~~~~~w~~~~--~~~~~~~-----------------~--~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~ 75 (80)
T PF13895_consen 17 VTLTCSVSGNPPPQVQWYKNG--SPINSSQ-----------------N--GLFIPNVSPEDSGNYTCRASNGSGSNTSTS 75 (80)
T ss_dssp EEEEEEEESSSSSEEEEEETT--EEEEEES-----------------S--EEEESSEEGGGTEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEcccceeeeeeeee--eeeeeee-----------------e--eeeeeeeccccCEEEEEEEEeCCCCeEeee
Confidence 468999999888999999966 2222110 1 16678899999999999998853 33444
Q ss_pred EEEE
Q psy13371 79 VNLN 82 (212)
Q Consensus 79 ~~l~ 82 (212)
+.|+
T Consensus 76 ~~v~ 79 (80)
T PF13895_consen 76 VNVT 79 (80)
T ss_dssp EEEE
T ss_pred EEee
Confidence 4444
No 261
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.59 E-value=3.1e-07 Score=58.48 Aligned_cols=72 Identities=15% Similarity=0.143 Sum_probs=48.8
Q ss_pred CeeEeeeCCCC------CceEEEEeeCcce----eeeecc-e---eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEE
Q psy13371 1 MLHQRKLKGLL------PTRVSWIRHRDIH----ILTVGS-Y---TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYE 66 (212)
Q Consensus 1 ~~l~C~~~~~p------~~~v~W~~~~~~~----~~~~~~-~---~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 66 (212)
+.|.|.++..+ ...+.|+|..... +..... . .....+|+++..+...++.+|+|.+++.+|+|.|.
T Consensus 17 VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~ 96 (119)
T cd05712 17 VLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQPEDSGKYF 96 (119)
T ss_pred EEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCChhhCeEEE
Confidence 47999876432 3569999976432 111111 0 01123688886556778899999999999999999
Q ss_pred EEecCC
Q psy13371 67 CQLSTQ 72 (212)
Q Consensus 67 C~~~~~ 72 (212)
|.+...
T Consensus 97 C~~~~~ 102 (119)
T cd05712 97 FRVELG 102 (119)
T ss_pred EEEEcC
Confidence 988653
No 262
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.59 E-value=1.2e-06 Score=55.31 Aligned_cols=80 Identities=23% Similarity=0.375 Sum_probs=49.0
Q ss_pred CCceeeeCCCcEEEEeEEeeCCC--CCceEEEEEc----Ce--EEEee-CCC--------CceeEEeecCceEEEEEEEe
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPE--PPAYIFWYHH----DE--VISYD-SSR--------GGVSVITEKGEVTTSYLLIQ 155 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~--p~~~v~W~~~----~~--~~~~~-~~~--------~~~~~~~~~~~~~~~~l~i~ 155 (212)
+..+.+.+|+.++|.|.....+. ....+.|++. +. .+... ... ..+.....+.......|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 46678999999999999865432 1235899753 11 12111 100 01111111111123569999
Q ss_pred eeeecCCEEEEEEcccC
Q psy13371 156 QAELKDSGKYSCSPSNA 172 (212)
Q Consensus 156 ~~~~~d~g~y~C~~~n~ 172 (212)
+++.+|+|.|.|.+.|.
T Consensus 85 ~v~~~D~G~Y~C~v~~~ 101 (115)
T cd05880 85 QLQPTDNGTYTCQVKNP 101 (115)
T ss_pred eCChhhCEEEEEEEEeC
Confidence 99999999999999986
No 263
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.57 E-value=4.2e-07 Score=55.33 Aligned_cols=53 Identities=19% Similarity=0.304 Sum_probs=33.8
Q ss_pred ceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 13 TRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 13 ~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
..+.|+|++.....+.. ......|.... +..|.|..+..+|+|.|+|.+.+..
T Consensus 41 ~~v~WyK~~~~~~~~~~--~~~~~~Ri~~~------~~~Lwf~Pa~~eDSG~Y~C~~rN~t 93 (104)
T cd05896 41 LSLMWYKSSGDGEEPIE--IIFDGVRMSKE------EDSIWFRPAELQDSGLYTCVLRNST 93 (104)
T ss_pred ceEEEEECCCCCCCCCc--ccccceeEEEe------CCEEEEEeCChhhCeEEEEEECCCC
Confidence 48999998631211111 00011244433 3479999999999999999999864
No 264
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.57 E-value=1.4e-06 Score=53.09 Aligned_cols=72 Identities=18% Similarity=0.323 Sum_probs=48.9
Q ss_pred eeEeeeCCCCCc-eEEEEeeCcceeeeecceeeecCCceEEEeeC--CCCeEEEEEcccCCCC-CEEEEEEecCC-Ccee
Q psy13371 2 LHQRKLKGLLPT-RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRR--EGDEWTLHIKWAQKRD-AGVYECQLSTQ-PVRS 76 (212)
Q Consensus 2 ~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~i~~~~~~d-~G~Y~C~~~~~-~~~~ 76 (212)
.|.|.+.+.|.| .|.|...+. .+..+ .++||.+.... ......|+|.++..+| .|.|.|.+.|. +...
T Consensus 20 ~L~C~~~s~P~P~~i~W~w~~~--~i~~~-----~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~ 92 (98)
T cd05898 20 KVKCFIGSTPPPDRIAWAWKEN--VLESG-----TSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGT 92 (98)
T ss_pred EEEEEEccCCCCcEEEEEEccc--cccCC-----CCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccce
Confidence 699999777765 678887663 22111 14578776422 2345679999998877 79999999996 4444
Q ss_pred EEEE
Q psy13371 77 FFVN 80 (212)
Q Consensus 77 ~~~~ 80 (212)
..+.
T Consensus 93 ~~i~ 96 (98)
T cd05898 93 AIIQ 96 (98)
T ss_pred EEEE
Confidence 4443
No 265
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.56 E-value=3.3e-07 Score=55.39 Aligned_cols=67 Identities=15% Similarity=0.272 Sum_probs=46.3
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
++..+..|+.++|.|... .+...+.|+++|........ ........+.|.++..+|+|.|+|.+.+.
T Consensus 9 p~~vV~~G~~VtL~C~~~---~~~~~f~l~k~g~~~~~~~~---------~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 9 PSSVVPLGKPVTLRCQGP---YGAVEYRLYREGSTFAVKKP---------PEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCCccCCCCcEEEEEecC---CCCCEEEEEECCCCcccccc---------CCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 345688999999999874 23334888888865421110 01111234999999999999999999764
No 266
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.55 E-value=1.3e-07 Score=54.72 Aligned_cols=60 Identities=30% Similarity=0.540 Sum_probs=39.0
Q ss_pred CcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEccc
Q psy13371 102 STINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 102 ~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
+.+.|.|.+.+.+. ...+.|+ ...... ...........+.|.+.++..+|.|.|+|.|.|
T Consensus 16 ~~~~l~C~~~~~~~-~~~~~W~-~~~~~~--------~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 16 GSVTLTCSAEGGPP-PPSISWY-DSNPSF--------NSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEEESSEES-SEEEEEE-TEEEEE--------EEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred eeEEEEEEEccccC-CeEEEEE-ecCCce--------eeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 33999999987752 5569999 111110 011111122335699999999999999999976
No 267
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.54 E-value=6.3e-07 Score=55.58 Aligned_cols=69 Identities=23% Similarity=0.378 Sum_probs=47.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcc--ee----eeecc--e-ee----ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDI--HI----LTVGS--Y-TY----TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~--~~----~~~~~--~-~~----~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 67 (212)
+.|.|.+.+.....+.|+|.... .. ..... . .. ...+|+.... ......|+|.+++.+|+|.|.|
T Consensus 9 vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~--~~~~~~L~I~~~~~sDsgtY~C 86 (104)
T cd05720 9 VELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSR--SSNSFVLTLKNFQKENEGYYFC 86 (104)
T ss_pred EEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEe--cCCEEEEEECCCCHHHCEEEEE
Confidence 46899997776678999997743 11 11111 1 11 1135777653 3477889999999999999999
Q ss_pred EecC
Q psy13371 68 QLST 71 (212)
Q Consensus 68 ~~~~ 71 (212)
....
T Consensus 87 a~~~ 90 (104)
T cd05720 87 SVAS 90 (104)
T ss_pred EEcc
Confidence 8764
No 268
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.53 E-value=8.3e-07 Score=55.30 Aligned_cols=80 Identities=21% Similarity=0.380 Sum_probs=50.2
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe-----EEEeeCCC-----CceeEEeecCceEEEEEEEeeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-----VISYDSSR-----GGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~-----~~~~~~~~-----~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.+.|....+.+|+.++|.|.+.+.. ....+.|++... .+...... ..+..... ......|.|++++.
T Consensus 4 ~Q~p~~~~v~~G~~v~L~C~~~~~~-~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~~~~ 80 (106)
T cd04980 4 TQSPATLSVSPGESATISCKASQSV-SSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG--SGTDFTLTISRVEP 80 (106)
T ss_pred EECCCcEEECCCCCEEEEEEECCCC-CCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEec--cCCEEEEEECCCCh
Confidence 3456667889999999999986543 123489998631 11111100 11122111 11335699999999
Q ss_pred cCCEEEEEEcccC
Q psy13371 160 KDSGKYSCSPSNA 172 (212)
Q Consensus 160 ~d~g~y~C~~~n~ 172 (212)
+|+|.|.|.+.+.
T Consensus 81 ~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 81 EDAAVYYCQQYGT 93 (106)
T ss_pred HHCEEEEEEEeCC
Confidence 9999999998653
No 269
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.52 E-value=6.4e-07 Score=54.26 Aligned_cols=73 Identities=22% Similarity=0.303 Sum_probs=44.2
Q ss_pred eCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 99 ~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..++.++|.|.+.+..++.+.+.|.++|..+....... ......++.. ..+.|.+..-...+...|+|.+.+.
T Consensus 12 ~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s-~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~ 85 (94)
T cd05847 12 GTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAAST-APQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQ 85 (94)
T ss_pred CCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeec-ccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEEC
Confidence 34567899999998766678899999998753211111 1122222221 2344555433333556999999886
No 270
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.52 E-value=8e-07 Score=55.22 Aligned_cols=77 Identities=29% Similarity=0.442 Sum_probs=49.0
Q ss_pred eeeCCCcEEEEeEEeeCCCCCceEEEEEcCe-----EEEee-C-------CCCceeEEeecCceEEEEEEEeeeeecCCE
Q psy13371 97 HVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-----VISYD-S-------SRGGVSVITEKGEVTTSYLLIQQAELKDSG 163 (212)
Q Consensus 97 ~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~-----~~~~~-~-------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g 163 (212)
.+.+|+.++|.|..... .+...+.|++... .+... . ....+.............|.|.+++.+|+|
T Consensus 2 ~v~~G~~v~L~C~~~~~-~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G 80 (105)
T cd00099 2 SVSEGESVTLSCTYSGS-FSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA 80 (105)
T ss_pred eecCCCCEEEEEEEeCC-cCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence 46789999999999864 2333589998542 11111 0 111222222222113356999999999999
Q ss_pred EEEEEcccCCe
Q psy13371 164 KYSCSPSNADV 174 (212)
Q Consensus 164 ~y~C~~~n~~~ 174 (212)
.|.|.+.+...
T Consensus 81 ~Y~C~v~~~~~ 91 (105)
T cd00099 81 VYYCAVSLSGG 91 (105)
T ss_pred EEEEEEecCCC
Confidence 99999987643
No 271
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.52 E-value=6.1e-07 Score=53.04 Aligned_cols=66 Identities=11% Similarity=0.186 Sum_probs=45.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|+|...+. ...+.|++++.. +. .+.|+... ...|.|.+++.+|+|.|.|.....+.....+.
T Consensus 14 v~L~C~~~s~-~A~v~W~~ng~~-l~--------~~~r~~~~------~~GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~ 77 (85)
T cd05872 14 VVLPCQLRSN-LASPVWLFNGTP-LN--------AQFSYRVG------TDGLLILVTSPEHSGTYRCYSEEEGFQQLVAS 77 (85)
T ss_pred EEEECCCCCC-CccEEEEECCcc-cC--------CCcceEEe------CCCCEEEECCHhhCEEEEEEEecCCCeEEEEE
Confidence 4799999876 459999998842 21 13354443 12477999999999999999887654444443
Q ss_pred EE
Q psy13371 81 LN 82 (212)
Q Consensus 81 l~ 82 (212)
+.
T Consensus 78 y~ 79 (85)
T cd05872 78 YS 79 (85)
T ss_pred EE
Confidence 33
No 272
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.52 E-value=4.3e-07 Score=55.82 Aligned_cols=80 Identities=14% Similarity=0.251 Sum_probs=48.8
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcc
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPS 170 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~ 170 (212)
.+.......++.++|.|.+.+..+..+.+.|.++|..+...... .......++.. ..+.|.+..-...+...|+|.+.
T Consensus 8 ~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~-~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~ 86 (100)
T cd07699 8 PPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQT-STTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVT 86 (100)
T ss_pred CCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEec-cccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEE
Confidence 33433455677899999999876567789999999877322111 11122223322 23445554333344569999998
Q ss_pred cC
Q psy13371 171 NA 172 (212)
Q Consensus 171 n~ 172 (212)
++
T Consensus 87 H~ 88 (100)
T cd07699 87 HE 88 (100)
T ss_pred ec
Confidence 86
No 273
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.49 E-value=2.5e-06 Score=53.59 Aligned_cols=79 Identities=28% Similarity=0.551 Sum_probs=50.7
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe-----EEE-ee---------CCCCceeEEeecCceEEEEEEEeee
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-----VIS-YD---------SSRGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~-----~~~-~~---------~~~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
+....+.+|+.+.|.|... .......+.|++... .+. .. .....+.....+.......|.|.++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~-~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l 86 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYS-SSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL 86 (114)
T ss_dssp ESEEEEETTSEEEEEEEEE-SSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred CCeEEEecCCCEEEEEEEe-CCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence 4556789999999999998 233444689998432 111 00 0111122222222223456999999
Q ss_pred eecCCEEEEEEcccC
Q psy13371 158 ELKDSGKYSCSPSNA 172 (212)
Q Consensus 158 ~~~d~g~y~C~~~n~ 172 (212)
+.+|+|.|.|.+...
T Consensus 87 ~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 87 QPSDSGTYFCQVSTS 101 (114)
T ss_dssp SGGGEEEEEEEEEES
T ss_pred CcCcCEEEEEEEEEC
Confidence 999999999999875
No 274
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.49 E-value=1.6e-06 Score=52.67 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=48.5
Q ss_pred CeeEeeeCCCCCce-EEEEeeCcceeeeecceeeecCCceEEEeeCCC--CeEEEEEcccCCCCCEEEEEEecCC-Ccee
Q psy13371 1 MLHQRKLKGLLPTR-VSWIRHRDIHILTVGSYTYTSDQRFSAIHRREG--DEWTLHIKWAQKRDAGVYECQLSTQ-PVRS 76 (212)
Q Consensus 1 ~~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~ 76 (212)
+.|.|.++.+|.|. +.|.+++.. ..... +..+... +... -...|++..++.+|+|.|+|.+.|. ...+
T Consensus 21 ~~L~V~ieAYP~p~~~~W~~~~~~--l~~~~-----~~~~~~~-~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s 92 (101)
T cd05860 21 LDLIVEYEAYPKPEHQQWIYMNRT--LTNTS-----DHYVKSR-NESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASAS 92 (101)
T ss_pred EEEEEEEEeCCCCeeeEEEcCCcc--cCccc-----cceeEEe-ccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEE
Confidence 35899999999997 999998741 11110 0011111 0011 1246999999999999999999996 3455
Q ss_pred EEEEEEE
Q psy13371 77 FFVNLNV 83 (212)
Q Consensus 77 ~~~~l~v 83 (212)
..+.|.|
T Consensus 93 ~tF~l~v 99 (101)
T cd05860 93 VTFNVYV 99 (101)
T ss_pred EEEEEEE
Confidence 5555554
No 275
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.49 E-value=3.9e-06 Score=49.13 Aligned_cols=75 Identities=16% Similarity=0.118 Sum_probs=43.6
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcceeeeecce-eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--cee
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIHILTVGSY-TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--VRS 76 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~ 76 (212)
+.|.|.+.|. |...|.|+|++. .+..... .-.....+.... .|.|.--...|...|+|++.+.. ...
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~--~l~~~~~~~~~~~~~~t~~S-------~L~~~p~~eDdG~~~~C~a~~~~l~~~~ 72 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNK--ELTGKSTVEETWSRMFTVTS-------QLMLKVTKEDDGVPVICLVDHPAVKDLQ 72 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCE--ECcCcccceeccCCCcEEEE-------EEEEECchhhCCCEEEEEEcCcccCCce
Confidence 4689999997 899999999873 2221111 001122333332 57774444445557999999852 234
Q ss_pred EEEEEEEe
Q psy13371 77 FFVNLNVV 84 (212)
Q Consensus 77 ~~~~l~v~ 84 (212)
....|.|.
T Consensus 73 ~~~~L~V~ 80 (82)
T cd05883 73 TQRYLEVQ 80 (82)
T ss_pred eeEEEEEE
Confidence 44555554
No 276
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.48 E-value=2e-06 Score=52.45 Aligned_cols=75 Identities=13% Similarity=0.177 Sum_probs=46.9
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCce--EEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcc
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAY--IFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 170 (212)
+....+.+|+.++|.|.+.+. .|.+. +.|++++..+....... .........+++.+.....+|...|+|.|.
T Consensus 8 ~~p~~~~eG~~~tL~C~v~g~-~P~a~L~i~W~rG~~~l~~~~~~~----~~~~~~~~~stlt~~~~r~D~g~~~sC~A~ 82 (100)
T cd05755 8 PLPSWQPVGKNYTLQCDVPGV-APRQNLTVVLLRGNETLSRQPFGD----NTKSPVNAPATITITVDREDHGANFSCETE 82 (100)
T ss_pred cCCCcccCCCcEEEEEEEcCc-CCCCcEEEEEeeCCEEcccceecc----ccCCCceeEEEEEEecchhhCCcEEEEEEE
Confidence 334457899999999999865 34444 79999998884321110 011122234557765444444449999998
Q ss_pred cC
Q psy13371 171 NA 172 (212)
Q Consensus 171 n~ 172 (212)
+.
T Consensus 83 l~ 84 (100)
T cd05755 83 LD 84 (100)
T ss_pred ec
Confidence 75
No 277
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.48 E-value=4.9e-06 Score=51.46 Aligned_cols=71 Identities=32% Similarity=0.437 Sum_probs=47.9
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe-----EE-EeeCC---------CCceeEEeecCceEEEEEEEeeeeec
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-----VI-SYDSS---------RGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~-----~~-~~~~~---------~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
..+.+|+++.|.|.. .|.....+.|++... .+ .+... ..++.....++ +|.|.+++.+
T Consensus 8 ~~~~~G~~V~L~v~~--~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng-----SL~I~~v~~~ 80 (105)
T cd05774 8 PQVAEGENVLLLVHN--LPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG-----SLLIQNVTQK 80 (105)
T ss_pred CcccCCCCEEEEecC--CCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC-----cEEEecCCcc
Confidence 357889999999976 456655799999631 11 11111 12233333333 4999999999
Q ss_pred CCEEEEEEcccCC
Q psy13371 161 DSGKYSCSPSNAD 173 (212)
Q Consensus 161 d~g~y~C~~~n~~ 173 (212)
|+|.|+|.+.+..
T Consensus 81 D~G~Y~~~v~~~~ 93 (105)
T cd05774 81 DTGFYTLQTITTN 93 (105)
T ss_pred cCEEEEEEEEeCC
Confidence 9999999998863
No 278
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.46 E-value=4.3e-06 Score=52.06 Aligned_cols=72 Identities=21% Similarity=0.432 Sum_probs=44.0
Q ss_pred CCCcEEEEeEEeeCC----CCCceEEEEEcCe------EEEeeC--------CCCceeEEeecCceEEEEEEEeeeeecC
Q psy13371 100 EGSTINLTCSIKYSP----EPPAYIFWYHHDE------VISYDS--------SRGGVSVITEKGEVTTSYLLIQQAELKD 161 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~----~p~~~v~W~~~~~------~~~~~~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~d 161 (212)
.|++++|.|.....| .....+.|++... .+.... ....+...... ......|.|.+++.+|
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~~D 79 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRA-HDLDASLVITDLRLED 79 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCC-CCCcEEEEEccCChHH
Confidence 388999999987553 2334599998641 111110 01112222111 1112469999999999
Q ss_pred CEEEEEEcccC
Q psy13371 162 SGKYSCSPSNA 172 (212)
Q Consensus 162 ~g~y~C~~~n~ 172 (212)
+|.|.|.+.+.
T Consensus 80 sG~Y~C~v~~~ 90 (106)
T cd05877 80 YGRYRCEVIDG 90 (106)
T ss_pred CEEEEEEEEec
Confidence 99999999876
No 279
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.46 E-value=1.2e-06 Score=50.93 Aligned_cols=68 Identities=16% Similarity=0.359 Sum_probs=42.5
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
++|.|.+.+..++.+++.|+++++++..... ........++.. ..+.|.+.....++...|+|.+.+.
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~-~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVS-TTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEE-ECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 6899999987656678999999986421111 111122233333 2445666554556667999999875
No 280
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.44 E-value=5.1e-06 Score=52.03 Aligned_cols=73 Identities=19% Similarity=0.316 Sum_probs=44.2
Q ss_pred CCCcEEEEeEEeeCCCC--------CceEEEEEcC--eEEE---ee-------CCCCceeEEee-cCceEEEEEEEeeee
Q psy13371 100 EGSTINLTCSIKYSPEP--------PAYIFWYHHD--EVIS---YD-------SSRGGVSVITE-KGEVTTSYLLIQQAE 158 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p--------~~~v~W~~~~--~~~~---~~-------~~~~~~~~~~~-~~~~~~~~l~i~~~~ 158 (212)
.|++++|.|.....+.+ ...+.|++.. +... .. ....++..... ........|.|++++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 48899999999754322 3568999862 2111 11 01111222211 111122459999999
Q ss_pred ecCCEEEEEEcccC
Q psy13371 159 LKDSGKYSCSPSNA 172 (212)
Q Consensus 159 ~~d~g~y~C~~~n~ 172 (212)
.+|+|.|.|.+...
T Consensus 81 ~sD~G~Y~C~v~~~ 94 (110)
T cd05878 81 SSDSGVYRCEVMHG 94 (110)
T ss_pred hhhCEEEEEEEEeC
Confidence 99999999999865
No 281
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.43 E-value=2.1e-06 Score=54.41 Aligned_cols=71 Identities=21% Similarity=0.322 Sum_probs=48.1
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceee----eec---cee-e--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHIL----TVG---SYT-Y--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~----~~~---~~~-~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|..++.. ...+.|+|....... ... ... . .-.+||....+.......|+|.+++.+|+|.|.|.
T Consensus 15 vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa 94 (117)
T cd04981 15 LKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPEDTAVYYCA 94 (117)
T ss_pred EEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHHHCEEEEEE
Confidence 46899987643 567999997742211 110 111 0 11368888765555667899999999999999998
Q ss_pred ecC
Q psy13371 69 LST 71 (212)
Q Consensus 69 ~~~ 71 (212)
...
T Consensus 95 ~~~ 97 (117)
T cd04981 95 RGL 97 (117)
T ss_pred EEc
Confidence 754
No 282
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.43 E-value=1e-06 Score=54.29 Aligned_cols=80 Identities=14% Similarity=0.252 Sum_probs=46.8
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEee--cCce-EEEEEEEeeeeecCCEEEEEEc
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE--KGEV-TTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
|+...+..++.++|.|.+.+..++.+.+.|.+++..+.............. ++.. ..+.|.+..-...+...|+|.+
T Consensus 8 p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V 87 (102)
T cd05768 8 PPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVV 87 (102)
T ss_pred cChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEe
Confidence 333344557889999999997767778999999987632211000001111 1222 2344555332223455899999
Q ss_pred ccC
Q psy13371 170 SNA 172 (212)
Q Consensus 170 ~n~ 172 (212)
.+.
T Consensus 88 ~H~ 90 (102)
T cd05768 88 GHE 90 (102)
T ss_pred EeC
Confidence 986
No 283
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.43 E-value=5.7e-06 Score=51.51 Aligned_cols=72 Identities=21% Similarity=0.377 Sum_probs=43.9
Q ss_pred CCCcEEEEeEEeeCC----CCCceEEEEEcC-----e-EEEeeCC--------CCceeEEeecCceEEEEEEEeeeeecC
Q psy13371 100 EGSTINLTCSIKYSP----EPPAYIFWYHHD-----E-VISYDSS--------RGGVSVITEKGEVTTSYLLIQQAELKD 161 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~----~p~~~v~W~~~~-----~-~~~~~~~--------~~~~~~~~~~~~~~~~~l~i~~~~~~d 161 (212)
.|++++|.|.....+ .....+.|++.. . .+..... ...+.... ........|.|++++.+|
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~~v~~sD 79 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLY-PADPGDASLVITDLRLED 79 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEee-CCCCCcceEEECCCCHHH
Confidence 488999999987553 123469999872 1 1111000 00111110 111123569999999999
Q ss_pred CEEEEEEcccC
Q psy13371 162 SGKYSCSPSNA 172 (212)
Q Consensus 162 ~g~y~C~~~n~ 172 (212)
+|.|.|.+.+.
T Consensus 80 ~G~Y~C~v~~~ 90 (106)
T cd05714 80 SGRYRCEVIDG 90 (106)
T ss_pred CEEEEEEEEcC
Confidence 99999999876
No 284
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.42 E-value=3.1e-06 Score=50.02 Aligned_cols=63 Identities=11% Similarity=0.195 Sum_probs=38.2
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcceeeeec-ceee-ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIHILTVG-SYTY-TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~-~~~~-~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+. |.+.|.|++++. .+... .... ..++.|.... .|.+......+.+.|+|.+.+.
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~--~l~~~~~~~~~~~~~~~~~~s-------~l~~~~~~~d~g~~~~C~v~h~ 67 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDK--ELKGVKLKEEDENGKTFTVTS-------SLRFQVDREDDGAPIICRVDHP 67 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCE--EccCceeeEecCCCCEEEEEE-------EEEEEcchhhCCCEEEEEEeCh
Confidence 4699999886 889999999873 22211 0111 1122333332 4555444455567899999985
No 285
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=98.41 E-value=1.9e-06 Score=52.23 Aligned_cols=80 Identities=13% Similarity=0.138 Sum_probs=46.4
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeec-CCEEEEEE
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELK-DSGKYSCS 168 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~g~y~C~ 168 (212)
+..|.......++.++|.|.+.+..++.+.+.|.++|..+.... .........+.....+.|.+. .+ ....|+|.
T Consensus 5 v~~ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~-~~~~~~~~~dty~~~S~L~vt---~~~~~~~ysC~ 80 (96)
T cd07697 5 IFSPSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGS-QKSEKDKDNDVYSTTSWLTVT---KDSLGKKFRCI 80 (96)
T ss_pred EECCCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCe-EeccEecCCCEEEEEEEEEEC---chhCCCeEEEE
Confidence 33444444555677999999999877888899999998753221 111111111211122334443 32 23369999
Q ss_pred cccCC
Q psy13371 169 PSNAD 173 (212)
Q Consensus 169 ~~n~~ 173 (212)
+.+..
T Consensus 81 V~H~g 85 (96)
T cd07697 81 YKHEG 85 (96)
T ss_pred EEECC
Confidence 99864
No 286
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.41 E-value=5.8e-06 Score=55.43 Aligned_cols=83 Identities=19% Similarity=0.273 Sum_probs=53.3
Q ss_pred CeeEeeeC-CCCCceEEEEeeCcceeeeec--ceeeec--CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC--C
Q psy13371 1 MLHQRKLK-GLLPTRVSWIRHRDIHILTVG--SYTYTS--DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ--P 73 (212)
Q Consensus 1 ~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~--~~~~~~--~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~ 73 (212)
+.|.|... +...+.|+|+|.+. .+.... +..... .+|+.... ....+..|+|.+++.+|+|.|.|.+..- +
T Consensus 33 VtLsCs~t~s~~~~qVtWkK~~~-~IatY~~~g~~i~~~Fk~Rve~mS-~s~~~StItIknVt~sDeGcY~C~F~tfp~G 110 (189)
T PHA02987 33 VKISCNKTSSFNSILITWKKNNK-TIAGYGPCGPVIVDKFKNKIEYLS-KSFNESTILIKNVSLKDNGCYTCIFNTLLSK 110 (189)
T ss_pred EEEEEecCCCCccceEEEEEcCC-CEEEEecCCcEEChhhcCeEEEec-cCCCcceEEEEeCChhhCeEEEEEEEecCCC
Confidence 36899985 55788999999754 222111 111111 13565321 3445678999999999999999999874 2
Q ss_pred -ceeEEEEEEEec
Q psy13371 74 -VRSFFVNLNVVV 85 (212)
Q Consensus 74 -~~~~~~~l~v~~ 85 (212)
..+...-|+|..
T Consensus 111 ~~~~gt~CLtVt~ 123 (189)
T PHA02987 111 NNEKGVVCLNVTT 123 (189)
T ss_pred CCceeEEEEEEEc
Confidence 445555666654
No 287
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.41 E-value=3.1e-06 Score=53.65 Aligned_cols=81 Identities=27% Similarity=0.448 Sum_probs=51.2
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEE---Eee-----CCCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVI---SYD-----SSRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~---~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
+.+....+..|+.++|.|...... ....+.|++.. ..+ ... ....++.....+.......|.|+++..+
T Consensus 4 q~~~~v~~~~G~~v~L~C~~~~~~-~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~ 82 (116)
T cd07706 4 QAQPDVSVQVGEEVTLNCRYETSW-TNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE 82 (116)
T ss_pred EeCCceEEcCCCCEEEEEEEeCCC-CceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence 445667889999999999986532 33458999853 211 110 0111233332211122356999999999
Q ss_pred CCEEEEEEcccC
Q psy13371 161 DSGKYSCSPSNA 172 (212)
Q Consensus 161 d~g~y~C~~~n~ 172 (212)
|+|.|.|.+...
T Consensus 83 Dsg~Y~C~~~~~ 94 (116)
T cd07706 83 DSAKYFCALSTL 94 (116)
T ss_pred HCEEEEEEEECC
Confidence 999999998753
No 288
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.40 E-value=8.6e-06 Score=51.00 Aligned_cols=73 Identities=18% Similarity=0.270 Sum_probs=44.0
Q ss_pred CCCcEEEEeEEeeCCCC----------CceEEEEEcCe----EE-Eee-------CCCCceeEEee-cCceEEEEEEEee
Q psy13371 100 EGSTINLTCSIKYSPEP----------PAYIFWYHHDE----VI-SYD-------SSRGGVSVITE-KGEVTTSYLLIQQ 156 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p----------~~~v~W~~~~~----~~-~~~-------~~~~~~~~~~~-~~~~~~~~l~i~~ 156 (212)
.|++++|.|.......+ ...+.|++... .+ ... .....+..... ........|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 48899999998743211 34699997521 11 111 11111222221 0011224699999
Q ss_pred eeecCCEEEEEEcccC
Q psy13371 157 AELKDSGKYSCSPSNA 172 (212)
Q Consensus 157 ~~~~d~g~y~C~~~n~ 172 (212)
++.+|+|.|.|.+.+.
T Consensus 81 l~~sDsG~Y~C~V~~g 96 (112)
T cd05900 81 LRSNDSGTYRCEVMHG 96 (112)
T ss_pred cccccCEEEEEEEecC
Confidence 9999999999999976
No 289
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.38 E-value=2.7e-06 Score=51.44 Aligned_cols=66 Identities=26% Similarity=0.353 Sum_probs=42.9
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEE-----Ee---------eCCCCceeEEeecCceEEEEEEEeeeeecCCEEEE
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVI-----SY---------DSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~-----~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 166 (212)
|++++|.|.... .....+.|++..... .. .....++.....+ ..|.|.+++.+|+|.|+
T Consensus 1 G~~VtL~c~~~~--~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-----~sL~I~~l~~~DsG~Y~ 73 (92)
T cd05741 1 GESVTLPVSNLP--ENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN-----GSLLIQNLTKEDSGTYT 73 (92)
T ss_pred CCcEEEEcccCC--CCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC-----ceEEEccCCchhcEEEE
Confidence 788999998754 344469999865321 00 0011122222222 35999999999999999
Q ss_pred EEcccCC
Q psy13371 167 CSPSNAD 173 (212)
Q Consensus 167 C~~~n~~ 173 (212)
|.+....
T Consensus 74 c~v~~~~ 80 (92)
T cd05741 74 LQIISTN 80 (92)
T ss_pred EEEEcCC
Confidence 9998763
No 290
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.37 E-value=2e-06 Score=50.86 Aligned_cols=64 Identities=27% Similarity=0.396 Sum_probs=40.2
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecC-c-eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG-E-VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+.|.|.+.+. .|.+++.|+++++.+.... .......+ . ...+.|.+.....++.+.|+|.+.|+
T Consensus 2 ~~L~C~~~~~-~P~~~v~W~~~~~~l~~~~----~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~ 67 (82)
T cd05761 2 VELTCTSSGS-KPAATIRWFKGDKELKGVK----LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHP 67 (82)
T ss_pred EEEEEEecCc-CcCCeEEEEECCEEccCce----eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeCh
Confidence 6899999876 2445799999998874211 11121122 1 12345666544556667999999987
No 291
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.37 E-value=3.7e-06 Score=51.56 Aligned_cols=76 Identities=16% Similarity=0.299 Sum_probs=47.9
Q ss_pred eeeCCCcEEEEeEEeeCCCCCceEEEEEcCeE----EEee-----CCCCceeEEeecCceEEEEEEEeeeeecCCEEEEE
Q psy13371 97 HVDEGSTINLTCSIKYSPEPPAYIFWYHHDEV----ISYD-----SSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 97 ~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 167 (212)
.+.+|++++|.|..... .....+.|++.... +... .....+.....+.......|.|.+++.+|+|.|.|
T Consensus 3 ~~~~G~~vtl~C~~~~~-~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 3 TGELGGSVTIPCPYPPK-NRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEeCCeEEEEeeCCCC-CCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 57789999999987643 23345899986421 1100 01112232322222234579999999999999999
Q ss_pred EcccCC
Q psy13371 168 SPSNAD 173 (212)
Q Consensus 168 ~~~n~~ 173 (212)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 998653
No 292
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.37 E-value=1.2e-06 Score=50.55 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=39.0
Q ss_pred CeeEeeeCCCC-CceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLL-PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+.+.+ .+.+.|+.... .... . ..........|.|.++..+|.|.|+|.+.|
T Consensus 18 ~~l~C~~~~~~~~~~~~W~~~~~-~~~~-~------------~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 18 VTLTCSAEGGPPPPSISWYDSNP-SFNS-N------------SRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSEESSEEEEEETEEE-EEEE-E------------EEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEEEEccccCCeEEEEEecCC-ceee-e------------eeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 36899999997 89999991111 0000 0 000112455899999999999999999864
No 293
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.35 E-value=5.3e-06 Score=51.75 Aligned_cols=74 Identities=20% Similarity=0.345 Sum_probs=44.7
Q ss_pred eeeCCCcEEEEeEEeeCCCCCceEEEEEcCeE---------EEeeCCC---------CceeEEeecCceEEEEEEEeeee
Q psy13371 97 HVDEGSTINLTCSIKYSPEPPAYIFWYHHDEV---------ISYDSSR---------GGVSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 97 ~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~---------~~~~~~~---------~~~~~~~~~~~~~~~~l~i~~~~ 158 (212)
.+.+|+.++|.|...... ....+.|++.... +...... ..+.............|.|.+++
T Consensus 2 ~v~~G~~vtL~C~~~~~~-~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 80 (107)
T cd07700 2 LVQTNNTVKLSCEAKGIS-ENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK 80 (107)
T ss_pred EEcCCCCEEEEEEEecCC-CCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence 478899999999986432 2224899986431 1111000 11121111111223569999999
Q ss_pred ecCCEEEEEEccc
Q psy13371 159 LKDSGKYSCSPSN 171 (212)
Q Consensus 159 ~~d~g~y~C~~~n 171 (212)
.+|+|.|.|...+
T Consensus 81 ~~Dsg~YyCa~~~ 93 (107)
T cd07700 81 PEDSGTYFCMTVG 93 (107)
T ss_pred HHHCEEEEEeEcC
Confidence 9999999999753
No 294
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.34 E-value=5.6e-06 Score=50.19 Aligned_cols=68 Identities=18% Similarity=0.264 Sum_probs=42.0
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
++.++|.|.+.+..++...+.|.++++........ .......++.. ..+.|.+ ...+.+.|+|.+.+.
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~-~~~~~~~d~ty~~~s~l~v---~~~~~~~ytC~V~H~ 82 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVES-GEILPNGDGTYQLWVTLEV---PPEDKARYSCRVEHS 82 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccc-cceEECCCCeEEEEEEEEE---CCCCCCEEEEEEEeC
Confidence 67899999999976666689999998633211111 11122223322 2234444 334778999999886
No 295
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.33 E-value=8.1e-06 Score=49.99 Aligned_cols=69 Identities=19% Similarity=0.382 Sum_probs=40.7
Q ss_pred CcEEEEeEEeeCCC-CCceEEEEEcCeE----EE-eeC--------CCCceeEEeecCceEEEEEEEeeeeecCCEEEEE
Q psy13371 102 STINLTCSIKYSPE-PPAYIFWYHHDEV----IS-YDS--------SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 102 ~~~~l~C~~~~~~~-p~~~v~W~~~~~~----~~-~~~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 167 (212)
++++|.|....... ....+.|++.... +. ... ....+....... .....|.|.+++.+|+|.|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~sL~I~~v~~~D~G~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSS-LEDATISISNLRLEDEGNYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCC-CCceEEEEccCCcccCEEEEE
Confidence 46899999875431 2335899986531 11 100 001111111111 123569999999999999999
Q ss_pred Eccc
Q psy13371 168 SPSN 171 (212)
Q Consensus 168 ~~~n 171 (212)
.+..
T Consensus 80 ~v~~ 83 (98)
T cd05718 80 EFAT 83 (98)
T ss_pred EEEe
Confidence 9864
No 296
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.32 E-value=4.8e-06 Score=52.79 Aligned_cols=80 Identities=21% Similarity=0.296 Sum_probs=49.2
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe---E--EE-eeC---------CCCceeEEeecCceEEEEEEEee
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE---V--IS-YDS---------SRGGVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~---~--~~-~~~---------~~~~~~~~~~~~~~~~~~l~i~~ 156 (212)
.|....+.+|+.++|.|...........+.|++... + +. ... ....+.....+.......|.|.+
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 456678899999999998754321123489998642 1 11 110 01122222222222334699999
Q ss_pred eeecCCEEEEEEccc
Q psy13371 157 AELKDSGKYSCSPSN 171 (212)
Q Consensus 157 ~~~~d~g~y~C~~~n 171 (212)
+..+|+|.|.|.+..
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 999999999998764
No 297
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.32 E-value=6.8e-06 Score=50.56 Aligned_cols=72 Identities=15% Similarity=0.275 Sum_probs=41.4
Q ss_pred CCcEEEEeEEeeCCC-CCceEEEEEcCe--EEEeeCC-----------CCceeEEeec-CceEEEEEEEeeeeecCCEEE
Q psy13371 101 GSTINLTCSIKYSPE-PPAYIFWYHHDE--VISYDSS-----------RGGVSVITEK-GEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 101 g~~~~l~C~~~~~~~-p~~~v~W~~~~~--~~~~~~~-----------~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y 165 (212)
|+++.|.|....... ....+.|++... .+..... ...+...... .......|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 678999999853211 223588987552 2211100 0011111110 011124699999999999999
Q ss_pred EEEcccC
Q psy13371 166 SCSPSNA 172 (212)
Q Consensus 166 ~C~~~n~ 172 (212)
+|.+.+.
T Consensus 81 ~C~v~~~ 87 (100)
T cd05713 81 TCFFQSD 87 (100)
T ss_pred EEEEecC
Confidence 9999976
No 298
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.30 E-value=4.4e-06 Score=50.45 Aligned_cols=57 Identities=11% Similarity=0.127 Sum_probs=40.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|+|... .+...+.|+|++...... . .........+.|.+++.+|+|.|+|...+.
T Consensus 19 VtL~C~~~-~~~~~f~l~k~g~~~~~~--~------------~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 19 VTLRCQGP-YGAVEYRLYREGSTFAVK--K------------PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred EEEEEecC-CCCCEEEEEECCCCcccc--c------------cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 47999885 667788999887421110 0 012334568999999999999999999874
No 299
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.30 E-value=3.5e-06 Score=51.64 Aligned_cols=74 Identities=23% Similarity=0.438 Sum_probs=45.7
Q ss_pred eeeCCCcEEEEeEEeeCCCCCceEEEEEcCe--E---EEeeC-----CCCceeEEeecCceEEEEEEEeeeeecCCEEEE
Q psy13371 97 HVDEGSTINLTCSIKYSPEPPAYIFWYHHDE--V---ISYDS-----SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166 (212)
Q Consensus 97 ~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~--~---~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 166 (212)
.+.+|++++|.|...........+.|++... . +.... ....+......+ ....|.|++++.+|+|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~--~~~~L~I~~~~~~Dsg~Y~ 79 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSG--NTASLTISGAQTEDEADYY 79 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccC--CEEEEEECCCChhhCEEEE
Confidence 4678999999999865311223389998642 1 11111 011122222222 3356999999999999999
Q ss_pred EEcccC
Q psy13371 167 CSPSNA 172 (212)
Q Consensus 167 C~~~n~ 172 (212)
|.+.+.
T Consensus 80 C~~~~~ 85 (98)
T cd04984 80 CQVWDS 85 (98)
T ss_pred EEEccC
Confidence 998753
No 300
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=98.29 E-value=3.5e-06 Score=52.93 Aligned_cols=81 Identities=10% Similarity=0.165 Sum_probs=48.8
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeec-Cce-EEEEEEEeeeeecC-CEEEEE
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK-GEV-TTSYLLIQQAELKD-SGKYSC 167 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~l~i~~~~~~d-~g~y~C 167 (212)
..|....+..++.++|.|.+.+..+..+.+.|.+++..+....... ......+ +.. ..+.|.+......+ ...|+|
T Consensus 8 ~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~-~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC 86 (115)
T cd05769 8 FPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATD-PQALRENTSTYSISSRLRVSATEWFNPRNTFTC 86 (115)
T ss_pred ECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccc-cceecCCCCeEEEEEEEEEChHHhccCCCeEEE
Confidence 3344344556778999999998766667899999998764221111 1112222 222 23456665443333 459999
Q ss_pred EcccC
Q psy13371 168 SPSNA 172 (212)
Q Consensus 168 ~~~n~ 172 (212)
.+.+.
T Consensus 87 ~V~H~ 91 (115)
T cd05769 87 IVQFY 91 (115)
T ss_pred EEEEe
Confidence 99987
No 301
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.29 E-value=4.6e-06 Score=50.75 Aligned_cols=79 Identities=11% Similarity=0.169 Sum_probs=47.1
Q ss_pred CCCceeeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEc
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
.|....+..++.++|.|.+.+. .++.+.+.|.++++........ ......++.. ..+.|.+..-...+...|+|.+
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~--~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V 82 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQ--PPESHNNATLSVTSTLNVSTDDWISGDTFQCKV 82 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEec--ccccCCCCCEEEEEEEEeCHHHccCCCcEEEEE
Confidence 3444456678999999999998 6788889999987533211111 1122223321 2234544332222344899999
Q ss_pred ccC
Q psy13371 170 SNA 172 (212)
Q Consensus 170 ~n~ 172 (212)
.++
T Consensus 83 ~H~ 85 (96)
T cd07696 83 THP 85 (96)
T ss_pred ECC
Confidence 986
No 302
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.27 E-value=4e-06 Score=47.34 Aligned_cols=66 Identities=20% Similarity=0.297 Sum_probs=44.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
+.|.|.+.+.+...+.|++.+......... +.............|.|.+++.+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT-------RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccE-------EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 468999999888999999977421111000 000001123345679999999999999999998753
No 303
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.26 E-value=9.1e-06 Score=49.37 Aligned_cols=70 Identities=14% Similarity=0.220 Sum_probs=45.9
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcc
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 170 (212)
.++...+.+|++++|.|.... +...+.|++++...... .............+.|..++.+|+|.|.|...
T Consensus 6 a~p~~vV~~G~~VTL~C~~~~---~~~~f~l~k~g~~~~~~------~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 6 AHPSPVVPSGENVTLQCHSDI---RFDRFILYKEGRSKPVL------HLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred ecCCCccCCCCeEEEEEecCC---CCCEEEEEECCCCCCce------ecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 344567889999999998753 23348999988643211 00000111222358999999999999999864
No 304
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.26 E-value=1.1e-05 Score=50.39 Aligned_cols=73 Identities=15% Similarity=0.225 Sum_probs=46.1
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecC-c-eEEEEEEEeeeeecCCE-EEEEEcccC
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG-E-VTTSYLLIQQAELKDSG-KYSCSPSNA 172 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~i~~~~~~d~g-~y~C~~~n~ 172 (212)
.....|+.++|.|.+.+..++.+.+.|+++|+.+.... .......++ . ...+.|.+.. ...|.+ .|+|.+.+.
T Consensus 16 ~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~---~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~ 91 (111)
T cd05772 16 GRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQ---PNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHR 91 (111)
T ss_pred hccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccc---cceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeC
Confidence 34557888999999998766677899999999874211 111112222 2 2234565543 334434 699999987
No 305
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.25 E-value=5.6e-06 Score=48.99 Aligned_cols=65 Identities=22% Similarity=0.330 Sum_probs=41.4
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce--EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV--TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+.|.|.+.+.. |.+.+.|+++++++.... .......++.. ..+.|.+.....++...|+|.+.|+
T Consensus 2 ~~LtC~a~g~~-P~~~ItW~k~g~~l~~~~---~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~ 68 (83)
T cd07705 2 AKLRCTSSGSK-PAANIKWRKGDQELEGAP---TSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHE 68 (83)
T ss_pred EEEEEEecCcc-CCCEeEEEECCEECCCcc---eeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECc
Confidence 68999998763 445799999998773211 11112222212 2345666555566777999999987
No 306
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.25 E-value=2.3e-05 Score=48.88 Aligned_cols=81 Identities=19% Similarity=0.308 Sum_probs=47.7
Q ss_pred CCcEEEEeEEeeCCC-----CCceEEEEEcC-----eEEE----------eeCCCCceeEEee-cCceEEEEEEEeeeee
Q psy13371 101 GSTINLTCSIKYSPE-----PPAYIFWYHHD-----EVIS----------YDSSRGGVSVITE-KGEVTTSYLLIQQAEL 159 (212)
Q Consensus 101 g~~~~l~C~~~~~~~-----p~~~v~W~~~~-----~~~~----------~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~ 159 (212)
|+.++|.|.....|. ....+.|.+.. .... ...+..++..... .......+|.|++++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 778999999764332 13468998752 1111 0111122332222 1111235699999999
Q ss_pred cCCEEEEEEcccC---CeeEEEEEE
Q psy13371 160 KDSGKYSCSPSNA---DVASVYVHV 181 (212)
Q Consensus 160 ~d~g~y~C~~~n~---~~~~~~~~v 181 (212)
+|+|.|.|.+... ....+.+.|
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V 106 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEV 106 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEE
Confidence 9999999999875 344444444
No 307
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.25 E-value=5.1e-06 Score=50.80 Aligned_cols=74 Identities=15% Similarity=0.221 Sum_probs=44.7
Q ss_pred eCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCC---CceeEEeec--C----ceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSR---GGVSVITEK--G----EVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 99 ~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~---~~~~~~~~~--~----~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
..|+.++|.|..... .....+.|++........... ......... + ......|.|++++.+|+|.|.|.+
T Consensus 2 ~~G~sVtL~c~~~~~-~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v 80 (97)
T cd05775 2 ILGGSVTLPLNIPDG-TEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEI 80 (97)
T ss_pred ccCCeEEEeCCCCCC-cEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEE
Confidence 368999999987531 233458999875433322210 111000000 0 001246999999999999999999
Q ss_pred ccCC
Q psy13371 170 SNAD 173 (212)
Q Consensus 170 ~n~~ 173 (212)
.+..
T Consensus 81 ~~~~ 84 (97)
T cd05775 81 NTKN 84 (97)
T ss_pred EcCC
Confidence 8763
No 308
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.25 E-value=1.6e-05 Score=47.01 Aligned_cols=63 Identities=10% Similarity=0.225 Sum_probs=38.1
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcceeeeecce-ee-ecC-CceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIHILTVGSY-TY-TSD-QRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~-~~-~~~-~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|. |...|+|++++. .+..... .. ..+ +.|+.. ..|.+......|...|+|++.+.
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~--~l~~~~~~~~~~~~~~t~~~~-------s~l~~~~~~~d~g~~~tC~v~h~ 68 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQ--ELEGAPTSVLEDGNGKTFTVS-------SSVEFQVTREDDGAEITCSVGHE 68 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCE--ECCCcceeEEECCCCCEEEEE-------EEEEEEecchhCCCEEEEEEECc
Confidence 3689999996 889999999873 2221110 00 001 123322 14555455556667899999985
No 309
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.23 E-value=1.4e-05 Score=46.95 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=39.9
Q ss_pred CeeEeeeCCCCCc--eEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPT--RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|+|.....+.| .|+|+..++..... ...+..+|.+..+...|+|.++|.+...
T Consensus 17 LtLtl~~~s~s~p~~~i~w~~P~n~~~~~-----------------~~~~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 17 LTLTLHGSSNSLPAFKVEWRGPGNKSKQI-----------------LNQDKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred EEEEEecCCCCCCCccEEEeCCCCcccee-----------------ccCCccEEEeceeCcccCCEEEEEEEEC
Confidence 4689998665554 99999776432211 2234558999999999999999999654
No 310
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.23 E-value=6.3e-06 Score=48.75 Aligned_cols=66 Identities=21% Similarity=0.250 Sum_probs=40.5
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+.|.|.+.+.. |.+.+.|+++|..+.... ........++. ...+.|.+.....++...|+|.+.|+
T Consensus 2 ~~LtC~a~gf~-P~~~itW~kng~~l~~~~--~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~ 68 (83)
T cd05884 2 MQLTCKTSGSK-PAADIRWFKNDKEIKDVK--YLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHE 68 (83)
T ss_pred EEEEEEeCCcc-CCCEEEEEECCEECcCce--eeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEech
Confidence 68999998764 448899999998863211 00011111121 23345666544455666999999986
No 311
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.22 E-value=4.6e-06 Score=50.78 Aligned_cols=64 Identities=19% Similarity=0.322 Sum_probs=42.0
Q ss_pred CeeEeeeCCC-C-CceEEEEeeCcceeeeecc----eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 1 MLHQRKLKGL-L-PTRVSWIRHRDIHILTVGS----YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 1 ~~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
+.|.|.+.|. | ...|+|++++. .+.... .....++.|.... .|.+......|.|.|+|.+.+..
T Consensus 16 ~~L~C~a~g~~P~~~~i~W~~~g~--~~~~~~~~~~~~~~~~gt~~~~s-------~l~v~~~~~~~~~~y~C~v~h~~ 85 (95)
T cd00098 16 VTLTCLATGFYPPDITVTWLKNGK--ELTSGVTTTPPVPNSDGTYSVSS-------QLTVSPSDWNSGDTYTCVVTHES 85 (95)
T ss_pred eEEEEEEeeEECCCcEEEEEECCE--ECCCceeccccccCCCCCEEEEE-------EEEECHHHhCCCCCEEEEEEeCC
Confidence 4689999998 6 47899999773 222111 1112234444432 56777776779999999998854
No 312
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.21 E-value=2.9e-05 Score=49.37 Aligned_cols=82 Identities=22% Similarity=0.281 Sum_probs=50.2
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCC----CCCceEEEEEcCe-----EEEe-eCC-------CCceeEEeecCceEEEEEE
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSP----EPPAYIFWYHHDE-----VISY-DSS-------RGGVSVITEKGEVTTSYLL 153 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~----~p~~~v~W~~~~~-----~~~~-~~~-------~~~~~~~~~~~~~~~~~l~ 153 (212)
..|....+.+|+.++|.|...... .....+.|++... .+.. ... ..++.....+.......|.
T Consensus 4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~ 83 (119)
T cd05712 4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLL 83 (119)
T ss_pred cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEE
Confidence 346677899999999999875321 1133589998642 1111 110 1122222112222345699
Q ss_pred EeeeeecCCEEEEEEcccC
Q psy13371 154 IQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 154 i~~~~~~d~g~y~C~~~n~ 172 (212)
|++++.+|+|.|.|.+...
T Consensus 84 I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 84 ISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EccCChhhCeEEEEEEEcC
Confidence 9999999999999988654
No 313
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.20 E-value=6.1e-06 Score=50.19 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=46.3
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCC-CCCceEEEEEcCeEEEeeCCCCceeEEeecC-ceEEEEEEEeeeeecCCEEEEEE
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSP-EPPAYIFWYHHDEVISYDSSRGGVSVITEKG-EVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
..|....+..++.++|.|.+.+.. +..+.|.|.++++. .. ... ......++ ....+.|.+..-.-.....|+|.
T Consensus 9 ~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~--~~t-~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~ 84 (99)
T cd04986 9 QRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EA--VQT-SAESDQCGCYSVSSVLPGCAEEWNKGEPFACT 84 (99)
T ss_pred ECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-Cc--EEc-CcccCCCCCEEEEEEEEeCHHHhcCCCeEEEE
Confidence 334434455688899999999876 45678999999875 11 111 11112233 22345566543222334579999
Q ss_pred cccC
Q psy13371 169 PSNA 172 (212)
Q Consensus 169 ~~n~ 172 (212)
+.++
T Consensus 85 V~H~ 88 (99)
T cd04986 85 VTHP 88 (99)
T ss_pred EECC
Confidence 9987
No 314
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.20 E-value=1.8e-05 Score=47.71 Aligned_cols=69 Identities=12% Similarity=0.118 Sum_probs=44.7
Q ss_pred eCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceE-EEEEEEeeeeecCCEEEEEEcccC
Q psy13371 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT-TSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 99 ~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..|...+|.|.+.+..++.+.+.|.++|+.+. .... .......++... .+.|. +...+...|+|.+.+.
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~-~~~~p~~d~tyq~~s~l~---~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQ-SDLSFSKDWTFYLLKSTE---FTPTKGDEYACRVRHN 82 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEE-CcEEECCCCCEEEEEEEE---ECCCCCCeEEEEEEEC
Confidence 34666799999999877888899999999874 3211 112223333221 22233 3455666999999986
No 315
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.19 E-value=1.2e-05 Score=48.69 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=43.1
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.++..+|.|.+.+..++.+.+.|.++|+.+..+... .......++.. ..+.|.+ ...+...|+|.+.+.
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~-~~~~~~~Dgty~~~s~L~v---~~~~~~~ytC~V~H~ 83 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSE-TRYYPRQDLSFQKFSYLNF---TPEEGDIYSCIVEHW 83 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEE-eeeEeCCCCcEEEEEEEEE---ECCCCCeEEEEEEeC
Confidence 356679999999987777889999999876322111 11122233322 1233444 345556999999886
No 316
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=98.18 E-value=1.7e-05 Score=49.23 Aligned_cols=70 Identities=11% Similarity=0.088 Sum_probs=51.7
Q ss_pred CeeEeeeCCCC--C-ceEEEEeeCcceeeee------cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEec
Q psy13371 1 MLHQRKLKGLL--P-TRVSWIRHRDIHILTV------GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70 (212)
Q Consensus 1 ~~l~C~~~~~p--~-~~v~W~~~~~~~~~~~------~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 70 (212)
+.|.|.+++.. . -.+.|+|+.+..+..- +.+.....+|+..+.+.+.+..+|+|.+++.+|.+.|.|...
T Consensus 16 v~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca~e 94 (115)
T cd05721 16 ASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDIYFCKIE 94 (115)
T ss_pred EEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEEee
Confidence 46899998864 3 5799999876421111 111112357888888888899999999999999999999774
No 317
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.17 E-value=2.3e-05 Score=47.94 Aligned_cols=70 Identities=20% Similarity=0.313 Sum_probs=41.5
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCe----EEEeeCC-C--------CceeEEeecCceEEEEEEEeeeeecCCEEEEE
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDE----VISYDSS-R--------GGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~----~~~~~~~-~--------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 167 (212)
|++++|.|...... ....+.|++... .+..... . ..+...... ......|.|.+++.+|+|.|.|
T Consensus 1 G~~vtL~C~~~~~~-~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~sL~I~nv~~~D~G~Y~C 78 (97)
T cd05846 1 GGNVTLSCNLTLPE-EVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSL-GLNSTSITIWNVTLEDEGCYKC 78 (97)
T ss_pred CCcEEEEEEeCCCC-eeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCC-CCCccEEEEeCCceeeeEEEEE
Confidence 68899999875432 223589987532 1111100 0 111111111 1133569999999999999999
Q ss_pred EcccC
Q psy13371 168 SPSNA 172 (212)
Q Consensus 168 ~~~n~ 172 (212)
.+...
T Consensus 79 ~~~~~ 83 (97)
T cd05846 79 IFNTF 83 (97)
T ss_pred EEEeC
Confidence 98753
No 318
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.16 E-value=3.2e-05 Score=45.41 Aligned_cols=65 Identities=22% Similarity=0.233 Sum_probs=44.6
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..+..|++++|.|.....+.|...+.|...+...... ....+ .+|.+.++...|+|..+|.+...
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~--------~~~~~----ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI--------LNQDK----KTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee--------ccCCc----cEEEeceeCcccCCEEEEEEEEC
Confidence 3578899999999996555564459998654322100 01111 24899999999999999999643
No 319
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.16 E-value=3.8e-05 Score=46.59 Aligned_cols=70 Identities=10% Similarity=0.117 Sum_probs=44.5
Q ss_pred eCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceE-EEEEEEeeeeecCCEEEEEEcccC
Q psy13371 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT-TSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 99 ~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..|+..+|.|.+.+..++...+.|.++++.+..... ........++... .+.|.+ ...+...|+|.+.++
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~-~~~~~~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~ 82 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVV-STELIPNGDWTYQILVMLET---TPSRGDTYTCVVEHS 82 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCce-ecceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEeC
Confidence 457889999999997767778999999987643211 1111222232222 233443 344556999999987
No 320
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.14 E-value=4.1e-05 Score=46.52 Aligned_cols=77 Identities=18% Similarity=0.251 Sum_probs=44.2
Q ss_pred cEEEEeEEeeCCCCCceEEEEEcCe----EEEe-eC--------CCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 103 TINLTCSIKYSPEPPAYIFWYHHDE----VISY-DS--------SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 103 ~~~l~C~~~~~~~p~~~v~W~~~~~----~~~~-~~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
.++|.|..... .....|.|.+... .+.. .. +-.++........ ...+|.|.+++.+|+|.|.|.+
T Consensus 2 ~vtL~C~~~~~-~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~-~d~sI~i~nvt~~D~G~Y~C~~ 79 (96)
T cd05889 2 KMKLECVYPKT-GVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTR-EDMSLSFNNATEEDVGLYCCSL 79 (96)
T ss_pred CEEEEeEcCCC-CcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCC-CccEEEEcCCCcccCEEEEEEE
Confidence 57889987532 3455688987532 2211 11 1111222221111 2356999999999999999999
Q ss_pred ccC--CeeEEEEEE
Q psy13371 170 SNA--DVASVYVHV 181 (212)
Q Consensus 170 ~n~--~~~~~~~~v 181 (212)
..- ......+.|
T Consensus 80 ~t~P~g~~~~~i~~ 93 (96)
T cd05889 80 VTYPQGSWEKVIEV 93 (96)
T ss_pred EeCCCCCeEEEEEE
Confidence 874 444444444
No 321
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.14 E-value=2.4e-05 Score=48.52 Aligned_cols=70 Identities=17% Similarity=0.292 Sum_probs=43.5
Q ss_pred eeCCCcEEEEeEEeeCCCCCceEEEEEcCeE-------EEeeCC-C----------CceeEEeecCceEEEEEEEeeeee
Q psy13371 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHDEV-------ISYDSS-R----------GGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 98 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~-------~~~~~~-~----------~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
+.+|+.++|.|........ .+.|++.... +..... . ..+....... ....|.|++++.
T Consensus 3 v~~G~~vtL~C~~~~~~~~--~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~--~~~~L~I~~~~~ 78 (104)
T cd05720 3 AELGQKVELKCEVLNSSPT--GCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSS--NSFVLTLKNFQK 78 (104)
T ss_pred ccCCCeEEEEEEecCCCCC--cEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecC--CEEEEEECCCCH
Confidence 6789999999988543223 3899986421 111111 0 1112111111 345699999999
Q ss_pred cCCEEEEEEccc
Q psy13371 160 KDSGKYSCSPSN 171 (212)
Q Consensus 160 ~d~g~y~C~~~n 171 (212)
+|+|.|.|.+.+
T Consensus 79 sDsgtY~Ca~~~ 90 (104)
T cd05720 79 ENEGYYFCSVAS 90 (104)
T ss_pred HHCEEEEEEEcc
Confidence 999999998764
No 322
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.13 E-value=9.4e-05 Score=46.43 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=21.0
Q ss_pred EEEEEeeeeecCCEEEEEEcccC
Q psy13371 150 SYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 150 ~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.+|.|.+++.+|+|.|.|.+.+.
T Consensus 79 asL~i~~v~~sD~G~Y~C~V~~g 101 (117)
T cd05901 79 ASLTIVKLRASDAGVYRCEVMHG 101 (117)
T ss_pred eEEEEcccccccCEEEEEEEEEC
Confidence 46999999999999999999876
No 323
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.11 E-value=2.2e-05 Score=52.72 Aligned_cols=76 Identities=25% Similarity=0.413 Sum_probs=47.2
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-------EEEEEEEeeeeecCCEEEEE
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-------TTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~g~y~C 167 (212)
..++.+|+++.|.|.... +.....+.|.+..+.+..-...+......-.++. ..+.|.|.+++.+|+|.|.|
T Consensus 24 ~v~V~ege~VtLsCs~t~-s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C 102 (189)
T PHA02987 24 KITVSEHVNVKISCNKTS-SFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC 102 (189)
T ss_pred EEEEcCCCCEEEEEecCC-CCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence 356889999999999742 2233459999875433221122211111111111 23579999999999999999
Q ss_pred Eccc
Q psy13371 168 SPSN 171 (212)
Q Consensus 168 ~~~n 171 (212)
....
T Consensus 103 ~F~t 106 (189)
T PHA02987 103 IFNT 106 (189)
T ss_pred EEEe
Confidence 8864
No 324
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.09 E-value=0.00012 Score=44.72 Aligned_cols=69 Identities=14% Similarity=0.248 Sum_probs=40.3
Q ss_pred cEEEEeEEeeCCC--CCceEEEEEcC----eEEEeeCC---------CCceeEEeecCceEEEEEEEeeeeecCCEEEEE
Q psy13371 103 TINLTCSIKYSPE--PPAYIFWYHHD----EVISYDSS---------RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 103 ~~~l~C~~~~~~~--p~~~v~W~~~~----~~~~~~~~---------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 167 (212)
+++|.|.....+. ....|.|.+.. ..+..... ..++..... ......+|.|.+++.+|.|.|.|
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~-~~~~daSi~i~nl~~~D~G~Y~C 80 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKN-PSFEDGTISLSRLELEDEGVYIC 80 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcC-CCCCcceEEEcCCccccCEEEEE
Confidence 5789999874322 22358998742 12211111 111222221 11123569999999999999999
Q ss_pred EcccC
Q psy13371 168 SPSNA 172 (212)
Q Consensus 168 ~~~n~ 172 (212)
.+.+.
T Consensus 81 ~v~t~ 85 (99)
T cd05886 81 EFATF 85 (99)
T ss_pred EEEeC
Confidence 99983
No 325
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.09 E-value=3.7e-05 Score=46.66 Aligned_cols=69 Identities=14% Similarity=0.315 Sum_probs=41.3
Q ss_pred CcEEEEeEEeeCCCCCceEEEEEcC----eEEEeeC---------CCCceeEEeecCceEEEEEEEeeeeecCCEEEEEE
Q psy13371 102 STINLTCSIKYSPEPPAYIFWYHHD----EVISYDS---------SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 102 ~~~~l~C~~~~~~~p~~~v~W~~~~----~~~~~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
++++|.|..... .....|.|.+.. ..+.... ...++..... ......+|.|.+++.+|.|.|.|.
T Consensus 1 ~~vtL~C~~~~~-~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~-~~~~d~sl~i~nv~~~D~G~Y~C~ 78 (96)
T cd05887 1 KNVTLKCRIQVN-ETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKN-YSLLDATIMLENVGFSDIGVYICK 78 (96)
T ss_pred CCEEEEEEecCC-CcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcC-CCCCccEEEEeCCCccccEEEEEE
Confidence 368899998643 344578998742 1221111 1112222221 111235699999999999999999
Q ss_pred cccC
Q psy13371 169 PSNA 172 (212)
Q Consensus 169 ~~n~ 172 (212)
+.+-
T Consensus 79 v~tf 82 (96)
T cd05887 79 AVTF 82 (96)
T ss_pred EEeC
Confidence 8763
No 326
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.07 E-value=2.9e-05 Score=47.16 Aligned_cols=72 Identities=15% Similarity=0.267 Sum_probs=42.9
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
.++.++|.|.+.+..+..+.+.|.++|.. .... .........++.. ..+.|.+....-.....|+|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~-~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGV-KTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCc-EECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 46679999999997777888999999986 2111 1111122223322 23445543322223558999999864
No 327
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.05 E-value=8.7e-05 Score=45.62 Aligned_cols=70 Identities=19% Similarity=0.354 Sum_probs=40.7
Q ss_pred cEEEEeEEeeCCC-CCceEEEEEcCe-----EEE-eeCC--------CCceeEEeecCceEEEEEEEeeeeecCCEEEEE
Q psy13371 103 TINLTCSIKYSPE-PPAYIFWYHHDE-----VIS-YDSS--------RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 103 ~~~l~C~~~~~~~-p~~~v~W~~~~~-----~~~-~~~~--------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 167 (212)
+++|.|....... ....+.|++... .+. .... ..++.....+.......|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 5889999864331 233689998431 111 1100 011222221111123469999999999999999
Q ss_pred EcccC
Q psy13371 168 SPSNA 172 (212)
Q Consensus 168 ~~~n~ 172 (212)
.+.+.
T Consensus 82 ~v~~~ 86 (100)
T cd05888 82 RVITF 86 (100)
T ss_pred EEEeC
Confidence 98873
No 328
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=98.05 E-value=8.2e-06 Score=48.34 Aligned_cols=69 Identities=17% Similarity=0.311 Sum_probs=43.3
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.++.+.|.|.+.+..+..+.+.|.+++..+...... .......++.. ..+.|.+. ..+...|+|.+.+.
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~-~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~ 76 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVET-TPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHE 76 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEE-EEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEET
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeee-cccccccccceeeeEEEEec---CCCCCEEEEEEEEC
Confidence 388999999999876677789999999876211100 01111223322 23345544 45555999999886
No 329
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.04 E-value=4.3e-05 Score=45.18 Aligned_cols=63 Identities=16% Similarity=0.302 Sum_probs=38.8
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcceeeeeccee---eecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIHILTVGSYT---YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~---~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|. |...|+|+|++. .+...... ...++.|.... .|.+..-...+...|+|++.+.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~--~l~~~~~~~~~~~~~~t~~~~s-------~L~~~~~~~d~g~~ytC~v~h~ 68 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDK--EIKDVKYLKEEDANRKTFTVSS-------TLDFRVDRSDDGVAIICRVDHE 68 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCE--ECcCceeeEeeCCCCCEEEEEE-------EEEEEcccccCCCEEEEEEech
Confidence 4689999994 789999999874 22211110 01123334332 5666544455566899999885
No 330
>PHA03376 BARF1; Provisional
Probab=98.04 E-value=0.0002 Score=48.18 Aligned_cols=76 Identities=20% Similarity=0.351 Sum_probs=48.3
Q ss_pred ceeeeCCCcEEEEeEEe-eCCCCCceEEEEEc----CeEEE---------eeCCCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 95 DLHVDEGSTINLTCSIK-YSPEPPAYIFWYHH----DEVIS---------YDSSRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~-~~~~p~~~v~W~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
...+..|+++.|+|... ....+..++.|++. ...+. .+....++..+-.+. ...+|.|.+++.+
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~--gnvsLvI~~l~lS 97 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA--NTFFLVVTAANIS 97 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecC--CeEEEEEEeeeec
Confidence 34677899999999875 33346667999994 22211 111112222221111 2246999999999
Q ss_pred CCEEEEEEcccC
Q psy13371 161 DSGKYSCSPSNA 172 (212)
Q Consensus 161 d~g~y~C~~~n~ 172 (212)
|.|.|+|.++..
T Consensus 98 DdGtY~C~fQkg 109 (221)
T PHA03376 98 HDGNYLCRMKLG 109 (221)
T ss_pred CCceEEEEEEcC
Confidence 999999999865
No 331
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.03 E-value=5.8e-05 Score=44.22 Aligned_cols=67 Identities=21% Similarity=0.403 Sum_probs=39.1
Q ss_pred cEEEEeEEeeCCCCCceEEEEEcCe-----EEEeeC---------CCCceeEEeecCceEEEEEEEeeeeecCCEEEEEE
Q psy13371 103 TINLTCSIKYSPEPPAYIFWYHHDE-----VISYDS---------SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 103 ~~~l~C~~~~~~~p~~~v~W~~~~~-----~~~~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
.+.|.|.......+...+.|++... .+.... ....+.............|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 3689998875433323589988542 111111 11122222222212345699999999999999996
Q ss_pred c
Q psy13371 169 P 169 (212)
Q Consensus 169 ~ 169 (212)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 4
No 332
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.92 E-value=7.4e-05 Score=44.82 Aligned_cols=69 Identities=23% Similarity=0.399 Sum_probs=42.6
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|+.+.+.|.+.+. .|.+.+.|+.++..+... ..........+.. ..+.|.+.....++...++|.+.++
T Consensus 14 ~~~~~~~C~s~~~-~P~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~ 83 (89)
T PF08205_consen 14 GEEVTLTCSSSGG-YPPPQITWYLDGGPVVAS--NTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHP 83 (89)
T ss_dssp TEEEEEEEEEEEE-BS-EEEEEEETTCEECEE--EEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEET
T ss_pred ceEEEEEEEeCCe-ECCeEEEEEECCCceeee--eeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECC
Confidence 6799999988754 355569999998776110 0001112222332 2356777655556777999999987
No 333
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.91 E-value=6.7e-05 Score=42.12 Aligned_cols=66 Identities=27% Similarity=0.459 Sum_probs=41.8
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
+.|.|.+.+. +...+.|++++......... ..............|.+.+....|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~--~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGP--PPPTITWLKNGKPLPSSVLT--RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCC--CCCcEEEEECCEECCCcccE--EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 3689999763 44459999987654221110 011112222234569999999999999999998763
No 334
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.88 E-value=0.00017 Score=44.85 Aligned_cols=78 Identities=8% Similarity=0.060 Sum_probs=49.5
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCC-ceEEEEEcCe-EEE---eeC-------CCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPP-AYIFWYHHDE-VIS---YDS-------SRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~-~~v~W~~~~~-~~~---~~~-------~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
+....+.+|+.++|.|.+.+..... ..+.|.++-. .++ ... ....+.....+....+.+|.|.+++.+
T Consensus 5 ~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~ 84 (115)
T cd05721 5 QSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRAN 84 (115)
T ss_pred cCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHH
Confidence 3456788899999999997654444 5788988532 211 110 011222223333334457999999999
Q ss_pred CCEEEEEEcc
Q psy13371 161 DSGKYSCSPS 170 (212)
Q Consensus 161 d~g~y~C~~~ 170 (212)
|.+.|.|...
T Consensus 85 DTa~Y~Ca~e 94 (115)
T cd05721 85 QTDIYFCKIE 94 (115)
T ss_pred HCeEEEEEee
Confidence 9999999754
No 335
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.84 E-value=0.00022 Score=41.31 Aligned_cols=63 Identities=17% Similarity=0.316 Sum_probs=40.2
Q ss_pred eeEeeeCCC-CC-ceEEEEeeCcceeeee---cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 2 LHQRKLKGL-LP-TRVSWIRHRDIHILTV---GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 2 ~l~C~~~~~-p~-~~v~W~~~~~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
.|.|.+.|. |. ..|.|+|++. .+... .......++.|.... .|.|......+...|+|.+...
T Consensus 3 ~L~C~a~gf~P~~i~v~W~k~g~-~~~~~~~~~~~~~~~~gt~~~~s-------~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 3 TLVCLVSGFYPPDITVTWLRNGQ-EVTSGVSTTDPLKNSDGTYFLSS-------YLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred EEEEEEEeEeCCCCEEEEEECCE-ECCCCEEECceEECCCCCEEEEE-------EEEEccccCCCCCEEEEEEEEc
Confidence 689999997 54 6999999773 12111 011112345555543 5677666667778999999764
No 336
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.82 E-value=0.002 Score=49.62 Aligned_cols=122 Identities=14% Similarity=0.144 Sum_probs=75.2
Q ss_pred CCCeEEEEEcccCCCCCEEEEEEecCC----CceeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEee-CCCCCceE
Q psy13371 46 EGDEWTLHIKWAQKRDAGVYECQLSTQ----PVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKY-SPEPPAYI 120 (212)
Q Consensus 46 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~----~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~p~~~v 120 (212)
..+...|.|.++...++|.|+=.+.+. ......+.+.+..+|.+...+ ..+.+|+...-.|.+.. +|....++
T Consensus 285 ~p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p--~PVL~Ge~YkAtC~vA~YYPp~Svrl 362 (566)
T PHA03269 285 TTSDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIG--DPVLLGNPYAAYCKVNKYYPPHSVIV 362 (566)
T ss_pred CCCccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceEE
Confidence 445677999999999999998765432 123345555555555333332 25788999999999965 44456789
Q ss_pred EEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecC--CEEEEEEcc
Q psy13371 121 FWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKD--SGKYSCSPS 170 (212)
Q Consensus 121 ~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d--~g~y~C~~~ 170 (212)
.|+.++.++.... .........+|.+ ..|+|.+......| .-..+|.+.
T Consensus 363 rWf~ng~~V~~~~-it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~ 414 (566)
T PHA03269 363 KWTSNFGNIGKNF-ITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVL 414 (566)
T ss_pred EEEeCCcccCccc-cccceeecCCCceEEEEEEeccCccccCCCCCCceEEEE
Confidence 9999998875322 1122232344433 45566653322222 346788764
No 337
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.78 E-value=0.00012 Score=44.44 Aligned_cols=59 Identities=14% Similarity=0.028 Sum_probs=38.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
|.|.|.... +...+.|+|++........ ++. ......+.+.|..++.+|+|.|.|....
T Consensus 18 VTL~C~~~~-~~~~f~l~k~g~~~~~~~~------~~~-----~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 18 VTLQCHSDI-RFDRFILYKEGRSKPVLHL------YEK-----HHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred EEEEEecCC-CCCEEEEEECCCCCCceec------ccc-----cCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 579998876 5568999998853211000 000 0112345789999999999999999753
No 338
>KOG3515|consensus
Probab=97.67 E-value=9.1e-05 Score=60.25 Aligned_cols=162 Identities=22% Similarity=0.317 Sum_probs=85.7
Q ss_pred eeEeeeCC--CCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC--CceeE
Q psy13371 2 LHQRKLKG--LLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ--PVRSF 77 (212)
Q Consensus 2 ~l~C~~~~--~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~~~~ 77 (212)
.+.|.+.. .|.+.+.|..+...............+.-..- .......+.+...+.++.|+|+|.+.+. .....
T Consensus 116 qi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gs---s~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~ 192 (741)
T KOG3515|consen 116 QIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGS---SYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSF 192 (741)
T ss_pred EEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCc---eeccccceeeEEEEecCCceeEcccccccCccccc
Confidence 35664433 47889999987743222221111100000000 0012335778888899999999999984 23333
Q ss_pred EEEEEEec--cc--ceeeCC-CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEE
Q psy13371 78 FVNLNVVV--PT--AEILGS-PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152 (212)
Q Consensus 78 ~~~l~v~~--~~--~~~~~~-~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 152 (212)
...+.+.. +. ..+... ......+|+.+.|.|.+.+. .|.....|+++........ .......+....+.+
T Consensus 193 ~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg-~P~~~~~w~~~s~~~~~~s----l~~~~~sg~~v~~~~ 267 (741)
T KOG3515|consen 193 AKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGG-NPSQQQTWYKDSRPQSESS----LLSQEPSGDTVSSTL 267 (741)
T ss_pred cceeEeecccccccceecchhhcCcccccceEEEEehhhcC-Ccchhhhhccccccchhhh----cccCCCCCCcccccc
Confidence 33333332 11 112221 22457789999999976654 4555699999887653220 001111222222334
Q ss_pred EEeeeeecCCEEEEEEccc
Q psy13371 153 LIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 153 ~i~~~~~~d~g~y~C~~~n 171 (212)
.+..-..++.-...|.+.|
T Consensus 268 ~~~~~r~~~~~~~kc~a~n 286 (741)
T KOG3515|consen 268 VLRVGRQDLQAQLKCKASN 286 (741)
T ss_pred cccccccchhhhhhccccC
Confidence 4443344445577899988
No 339
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=97.63 E-value=9.5e-05 Score=47.01 Aligned_cols=80 Identities=13% Similarity=0.144 Sum_probs=44.6
Q ss_pred CeeEeeeCCC-----CCceEEEEeeCcceeeeecce----eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGL-----LPTRVSWIRHRDIHILTVGSY----TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~-----p~~~v~W~~~~~~~~~~~~~~----~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|+|.+.+. +...|.|.+++. .+...++. ....-++..+ .+...++++|.+.....- .|+|+|.+..
T Consensus 30 V~IPC~v~n~~~~ni~~m~VkWk~~~~-~If~~dg~~~~~~~~~f~sa~i-~~l~kG~aSL~~~~~~a~-~GnYTCeVt~ 106 (130)
T PF08204_consen 30 VVIPCFVNNLEANNISEMYVKWKFKNK-DIFIFDGTNNKSTSDNFPSAKI-SELLKGNASLKMDKSDAV-EGNYTCEVTE 106 (130)
T ss_dssp EEE--BBSS---SSGGGEEEEEEETTE-EEEEEETTTTEEEEGGGTT-BE-GGGGGTB--EEEEHHHHH--EEEEEEEEE
T ss_pred EEEEeEeccccccccceEEEEEEECCe-EEEEEcCccceecccCccccch-hHhhCCCEEEEEcchhcc-ccceEEEEEe
Confidence 3689999873 356899998774 33332211 0111234444 456778999999886655 8999999976
Q ss_pred CC-ceeEEEEEEE
Q psy13371 72 QP-VRSFFVNLNV 83 (212)
Q Consensus 72 ~~-~~~~~~~l~v 83 (212)
.. ..+..+.|..
T Consensus 107 ~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 107 LSREGETTIELKY 119 (130)
T ss_dssp TTEEEEEEEEEEE
T ss_pred cCCCceEEEEEEE
Confidence 42 3444444444
No 340
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.61 E-value=0.0045 Score=46.85 Aligned_cols=124 Identities=15% Similarity=0.266 Sum_probs=73.5
Q ss_pred CCCCeEEEEEcccCCCCCEEEEEEecCC---CceeEEEEEEEecccc-eeeCCCceeeeCCCcEEEEeEEeeC-CCCCce
Q psy13371 45 REGDEWTLHIKWAQKRDAGVYECQLSTQ---PVRSFFVNLNVVVPTA-EILGSPDLHVDEGSTINLTCSIKYS-PEPPAY 119 (212)
Q Consensus 45 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~---~~~~~~~~l~v~~~~~-~~~~~~~~~~~~g~~~~l~C~~~~~-~~p~~~ 119 (212)
....+.+|.|.++...|+|.|+-...+. ....+.+.+.+...|+ +...+ ..+..|+...-.|.+..+ |....+
T Consensus 202 ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a--~PVL~Ge~YkAtC~vAnYYPP~Svr 279 (490)
T PHA03271 202 KTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLA--PPVLSGENYKASCIVRHFYPPGSVY 279 (490)
T ss_pred cccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceE
Confidence 3456778999999999999665544442 2223333444444332 22222 247889999999999754 445668
Q ss_pred EEEEEcCeEEEeeCCCCceeEE--eecCceEEEEEEEeeeeecCCEEEEEEcc
Q psy13371 120 IFWYHHDEVISYDSSRGGVSVI--TEKGEVTTSYLLIQQAELKDSGKYSCSPS 170 (212)
Q Consensus 120 v~W~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 170 (212)
+.|+.+|............... ..++....+++.+.+...+..-..+|.+.
T Consensus 280 lrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~ 332 (490)
T PHA03271 280 VSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVA 332 (490)
T ss_pred EEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEE
Confidence 9999999877544433322212 22333344556554433334447788764
No 341
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.59 E-value=0.00072 Score=44.25 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=39.3
Q ss_pred eeEeeeCCC-CC-ceEEEEeeCcceee----eec----ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 2 LHQRKLKGL-LP-TRVSWIRHRDIHIL----TVG----SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 2 ~l~C~~~~~-p~-~~v~W~~~~~~~~~----~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
.|.|.+.|. |. ..|.|+|++..... ..+ ......++.|.+.. .|.+..-...+.+.|.|.+.+
T Consensus 57 ~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s-------~L~v~~~~~~~g~~ytC~V~H 129 (139)
T cd05771 57 TLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSS-------HLTLEPGTEDAGATYTCRVSH 129 (139)
T ss_pred EEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEE-------EEEecCCccCCCCEEEEEEEc
Confidence 689999995 54 58999998742111 001 11112345555543 577765555556689999987
Q ss_pred C
Q psy13371 72 Q 72 (212)
Q Consensus 72 ~ 72 (212)
.
T Consensus 130 ~ 130 (139)
T cd05771 130 V 130 (139)
T ss_pred C
Confidence 5
No 342
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.58 E-value=0.00082 Score=40.72 Aligned_cols=63 Identities=11% Similarity=0.145 Sum_probs=37.2
Q ss_pred CeeEeeeCC-CCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKG-LLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+++.|.+.+ .|...|+|+++....... ......++++++.. .|.+.-....|...|+|++.+.
T Consensus 18 ~va~C~s~~gkPaa~IsW~~~~~g~~~~--~~~~~~~gt~tv~S-------~l~~~P~~~d~Gk~ltC~v~h~ 81 (95)
T cd07703 18 PVAKCVSANGRPPARISWSSTLGGNANT--TSKENGDGTVTVTS-------EYSLVPTPEANGKEVTCKVEHE 81 (95)
T ss_pred EEEEEEcCCCCCCcEEEEEcCCCCCeeE--EEEeCCCCCEEEEE-------EEEEecCHHHCCCEEEEEEeCc
Confidence 368998774 699999999874221111 11112234555542 4565444444455799999985
No 343
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.53 E-value=0.00062 Score=41.20 Aligned_cols=63 Identities=19% Similarity=0.370 Sum_probs=35.5
Q ss_pred CeeEeeeCCC-CC-ceEEEEeeCcceeeee--cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 1 MLHQRKLKGL-LP-TRVSWIRHRDIHILTV--GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 1 ~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
+.|.|.+.|. |. ..|+|++++....... .......++.|.... .|.+ ...+.+.|+|.+.+.+
T Consensus 17 ~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s-------~l~v---~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 17 LTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWV-------TLEV---PPEDKARYSCRVEHSG 83 (93)
T ss_pred EEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEE-------EEEE---CCCCCCEEEEEEEeCC
Confidence 4699999995 54 4999999873111110 011111223333321 3444 3447889999998753
No 344
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.50 E-value=0.0012 Score=39.99 Aligned_cols=62 Identities=11% Similarity=0.138 Sum_probs=35.7
Q ss_pred eeEeeeC-CCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 2 LHQRKLK-GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 2 ~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
++.|.+. |.|.+.|.|+++....... ......++.+.+.. .|.+.-....|.-.|+|++.+.
T Consensus 19 va~C~s~~gkP~a~ItW~~~~~~~~~~--~~~~~~~g~~tv~S-------~l~~~p~~~d~G~~~tC~v~h~ 81 (95)
T cd05719 19 VATCVSANGKPPATISWETTLGGEAET--QSKENPNGTVTVTS-------EYRLVPSREANGKELTCVVSHP 81 (95)
T ss_pred EEEEECCCCcCCCEEEEEeCCCCccee--EeecCCCCCEEEEE-------EEEEecCHHHCCCEEEEEEeCc
Confidence 5789985 6799999999863211111 11111233444442 4555444444444699999885
No 345
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.48 E-value=0.0039 Score=47.84 Aligned_cols=119 Identities=21% Similarity=0.246 Sum_probs=73.6
Q ss_pred EEEEEcccCCCCCEEEEEEecCC-C--ceeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEee-CCCCCceEEEEEc
Q psy13371 50 WTLHIKWAQKRDAGVYECQLSTQ-P--VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKY-SPEPPAYIFWYHH 125 (212)
Q Consensus 50 ~~L~i~~~~~~d~G~Y~C~~~~~-~--~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~p~~~v~W~~~ 125 (212)
..|+|..+...++|.|+=...+. + .....+.+....+|.+...+ ..+.+|+...-.|.+.. +|....++.|+.+
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~--~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d 275 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSV--HPSLKGENYRAVCVVASYFPHSSVKLRWYKN 275 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 66999999999999998665442 2 22333444434455433332 24788999999999965 4445678999999
Q ss_pred CeEEEeeCCCCceeEEeecCc-eEEEEEEEeeeee-cCCEEEEEEcc
Q psy13371 126 DEVISYDSSRGGVSVITEKGE-VTTSYLLIQQAEL-KDSGKYSCSPS 170 (212)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~-~d~g~y~C~~~ 170 (212)
+.++..............++. ...|+|.+.+... +..-..+|.+.
T Consensus 276 g~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~ 322 (486)
T PHA03273 276 AKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIE 322 (486)
T ss_pred CeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEE
Confidence 998862222112222233343 4556676665433 34447888764
No 346
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.45 E-value=0.0049 Score=46.88 Aligned_cols=119 Identities=14% Similarity=0.115 Sum_probs=74.3
Q ss_pred EEEEEcccCCCCCEEEEEEecCC-C--ceeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEee-CCCCCceEEEEEc
Q psy13371 50 WTLHIKWAQKRDAGVYECQLSTQ-P--VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKY-SPEPPAYIFWYHH 125 (212)
Q Consensus 50 ~~L~i~~~~~~d~G~Y~C~~~~~-~--~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~p~~~v~W~~~ 125 (212)
..|.|..+....+|.|+=...+. . .....+.+....+|.+...+ ..+.+|+...-.|.+.. +|.....+.|+.+
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~--~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~n 259 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRP--HAVLEGEPFGATCVAANYYPGDRAAFRWFEG 259 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 35999999999999998886653 2 22334455544455433332 24788999999999965 4445668999999
Q ss_pred CeEEEeeCCCCceeEEeecCceEEEEEEEeeeeec-CCEEEEEEcc
Q psy13371 126 DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELK-DSGKYSCSPS 170 (212)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~g~y~C~~~ 170 (212)
+.++..............++....|++.+.+.... ..-..+|.+.
T Consensus 260 g~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~ 305 (466)
T PHA03270 260 GDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFT 305 (466)
T ss_pred CccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEE
Confidence 98774322222233334445445566666544322 2237788774
No 347
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.44 E-value=0.00091 Score=41.06 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=40.4
Q ss_pred CeeEeeeCCC-C-CceEEEEeeCcceeeeec----ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGL-L-PTRVSWIRHRDIHILTVG----SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
..|.|.+.|. | ...|.|+|++. .+..+ ......++.|+... .|.+......+...|+|.+...
T Consensus 20 ~~L~C~~~gfyP~~i~v~W~~~g~--~~~~~~~~~~~~~~~dgty~~~s-------~L~v~~~~w~~~~~~sC~V~H~ 88 (100)
T cd07699 20 ATLVCLINDFYPGFATVQWKVDGA--TVSSGVQTSTTEQQSDNTYSLSS-------YLTLTKSDWNKHKVYTCEVTHE 88 (100)
T ss_pred cEEEEEEEeEECCCCEEEEEECCE--ECcccEeccccEECCCCCEEEEE-------EEEEcHHHhCCCCeEEEEEEec
Confidence 3689999995 5 67899999873 22111 11122255666653 5666555555567899999875
No 348
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.40 E-value=0.0033 Score=38.13 Aligned_cols=66 Identities=17% Similarity=0.159 Sum_probs=39.6
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.....+.|.+.+. .|.+++.|+++.... .........++. ...+.|.+.....+|...|+|.+.|+
T Consensus 15 ~~~~va~C~s~~g-kPaa~IsW~~~~~g~-----~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~ 81 (95)
T cd07703 15 IPVPVAKCVSANG-RPPARISWSSTLGGN-----ANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHE 81 (95)
T ss_pred CccEEEEEEcCCC-CCCcEEEEEcCCCCC-----eeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCc
Confidence 3457899998755 577779999872211 111112222333 23456777555555666999999997
No 349
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.38 E-value=0.00033 Score=38.71 Aligned_cols=52 Identities=31% Similarity=0.479 Sum_probs=34.1
Q ss_pred eCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 99 ~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..|..++|+|+..+ .. +.|.++++...- .. ..+.+.+-. ++.|.|.|.+.+.
T Consensus 5 isGTtVtlTCP~~~---~~--i~W~~n~~~~~g--~~--------------~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLSG---DD--IKWKKNDQVSQG--SD--------------EKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCCC---CC--ceEEeCCccCCC--CC--------------ceEEeeccC-CCCceEEEEeCCC
Confidence 35889999998642 22 899999854421 10 014444444 8899999998654
No 350
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.38 E-value=0.0014 Score=39.76 Aligned_cols=63 Identities=16% Similarity=0.293 Sum_probs=38.3
Q ss_pred eeEeeeCCC-C-CceEEEEeeCcceeeeec----ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRHRDIHILTVG----SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. | ...|.|+|++. .+..+ ......++.|+... .|.+..-...+...|.|.+...+
T Consensus 18 ~L~C~a~gFyP~~I~vtW~~dg~--~~~~~~~~s~~~~~~~~Ty~~~S-------~L~v~~~~w~~~~~ytC~V~H~~ 86 (94)
T cd05847 18 QLLCLISGYTPGTIEVEWLVDGQ--VATLVAASTAPQKEEGSTFSTTS-------ELNVTQEDWKSGKTYTCKVTHQG 86 (94)
T ss_pred EEEEEEEeEECCCCEEEEEECCE--ECcCceeecccEECCCCcEEEEE-------EEEEchHHhcCCCeEEEEEEECC
Confidence 589999995 5 47899999873 22111 11222334455442 45555444445678999998753
No 351
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.37 E-value=0.0024 Score=38.76 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=38.9
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
......+.|.+.+. .|.+++.|+++.... .........++. ...+.|.+.....++...|+|.+.|+
T Consensus 14 ~~~~~va~C~s~~g-kP~a~ItW~~~~~~~-----~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~ 81 (95)
T cd05719 14 GEPVTVATCVSANG-KPPATISWETTLGGE-----AETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHP 81 (95)
T ss_pred CCccEEEEEECCCC-cCCCEEEEEeCCCCc-----ceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCc
Confidence 34467889999654 466679999862111 111111222232 23456777544455555999999987
No 352
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.33 E-value=0.0015 Score=39.94 Aligned_cols=62 Identities=16% Similarity=0.274 Sum_probs=35.1
Q ss_pred CeeEeeeCCC-CCce--EEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCE-EEEEEecCC
Q psy13371 1 MLHQRKLKGL-LPTR--VSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAG-VYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~--v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~ 72 (212)
+.|+|.+.|. |... |.|+|++ ..+........... ......+|.+. +.++|.| .|+|++...
T Consensus 19 ~tL~C~v~g~~P~a~L~i~W~rG~--~~l~~~~~~~~~~~-------~~~~~stlt~~-~~r~D~g~~~sC~A~l~ 84 (100)
T cd05755 19 YTLQCDVPGVAPRQNLTVVLLRGN--ETLSRQPFGDNTKS-------PVNAPATITIT-VDREDHGANFSCETELD 84 (100)
T ss_pred EEEEEEEcCcCCCCcEEEEEeeCC--EEcccceeccccCC-------CceeEEEEEEe-cchhhCCcEEEEEEEec
Confidence 3689999995 7665 7999987 33321111000000 11123356664 4455665 799999863
No 353
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.28 E-value=0.0031 Score=37.66 Aligned_cols=65 Identities=12% Similarity=0.216 Sum_probs=37.2
Q ss_pred eeEeeeCC-CCCceEEEEeeCcceeeee-cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKG-LLPTRVSWIRHRDIHILTV-GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~-~p~~~v~W~~~~~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.+.|.+.+ +|.+.|.|+.++....... .......++.+.... .|.+..-...+...++|.+.+..
T Consensus 18 ~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S-------~l~~~~~~~~~~~~~~C~~~~~~ 84 (89)
T PF08205_consen 18 TLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSS-------TLTLTPTREDHGKTLTCRASHPA 84 (89)
T ss_dssp EEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEE-------EEEEETTGGGTTEEEEEEEEETT
T ss_pred EEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEE-------EEEEEcChHHCCeEEEEEEECCc
Confidence 68997665 5999999999875321111 111122233444432 56665444455667999998753
No 354
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.23 E-value=0.0029 Score=38.47 Aligned_cols=65 Identities=12% Similarity=0.198 Sum_probs=37.3
Q ss_pred eeEeeeCCC--C-CceEEEEeeCcceeeee-cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL--L-PTRVSWIRHRDIHILTV-GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~--p-~~~v~W~~~~~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. | ...|+|+|+++...... .......|+.|++.. .|.+..-...+...|.|.+...+
T Consensus 18 tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s-------~l~v~~~~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 18 KLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTS-------TLNVSTDDWISGDTFQCKVTHPD 86 (96)
T ss_pred EEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEE-------EEEeCHHHccCCCcEEEEEECCC
Confidence 589999998 4 45889999864221111 111112244455543 45554433334557999998753
No 355
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.17 E-value=0.0015 Score=36.36 Aligned_cols=46 Identities=22% Similarity=0.406 Sum_probs=31.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+ ...|.|+++. .+... .+..|-+-+...+-.|.|.|...+
T Consensus 9 V~L~C~~----~tsi~W~kG~--~~~~~-------------------~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 9 VFLKCNG----ATNITWKKGK--EILEV-------------------SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred EEEEecC----CCcEEEecCc--ccccc-------------------cccEEeccCcccCCCcceEecCcc
Confidence 4689976 2569999933 22221 123667777888889999999876
No 356
>PHA02633 hypothetical protein; Provisional
Probab=97.14 E-value=0.0018 Score=35.19 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=27.8
Q ss_pred CeEEEEEcccCCCCCEEEEEEecCCC-ceeEEEEEEEe
Q psy13371 48 DEWTLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVV 84 (212)
Q Consensus 48 ~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~ 84 (212)
+...|-|-++..+|+|.|.|.+.+.. .....+.|+|.
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~ 53 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC 53 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence 34467788999999999999999863 44555666664
No 357
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.08 E-value=0.0036 Score=39.17 Aligned_cols=62 Identities=15% Similarity=0.332 Sum_probs=35.9
Q ss_pred eeEeeeCCC-C-CceEEEEeeCcceeeeecceee--ecC-CceEEEeeCCCCeEEEEEcccCCCCCE-EEEEEecCCC
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRHRDIHILTVGSYTY--TSD-QRFSAIHRREGDEWTLHIKWAQKRDAG-VYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~~~~--~~~-~r~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~ 73 (212)
.|.|.+.|. | ...|.|+|++. .+....... ..+ +.|.... .|.+.. ...|.| .|+|.+.+.+
T Consensus 25 tL~C~a~gF~P~~i~v~W~kng~--~~~~~~~~~~p~~d~~ty~~~S-------~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 25 NFTCSAHGFSPRDITVKWLKNGN--ELSAEQPNITPEGDSVSYNVTS-------TVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred EEEEEEeeEeCCCCEEEEEECCE--ECcccccceeeCCCCCcEEEEE-------EEEEEC-ccccccCceEEEEEeCC
Confidence 689999996 5 46999999874 222111111 112 2444432 455543 444544 5999998853
No 358
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.07 E-value=0.0014 Score=38.64 Aligned_cols=62 Identities=15% Similarity=0.285 Sum_probs=37.7
Q ss_pred eeEeeeCCC-C-CceEEEEeeCcceee--eecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRHRDIHIL--TVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~~~~~~~--~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. | ...|.|++++..... .........++.|.+.. .|.+. ..+...|.|.+....
T Consensus 12 ~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s-------~l~v~---~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 12 TLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTS-------SLTVT---WNSGDEYSCRVTHES 77 (83)
T ss_dssp EEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEE-------EEEEE---TTTTGGEEEEEEETT
T ss_pred EEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeE-------EEEec---CCCCCEEEEEEEECC
Confidence 689999995 5 458999987741110 01111113456666653 45555 455558999998753
No 359
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.01 E-value=0.0061 Score=36.79 Aligned_cols=59 Identities=8% Similarity=0.272 Sum_probs=36.7
Q ss_pred eeEeeeCCC-C-CceEEEEeeCcceeeeecc----eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRHRDIHILTVGS----YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. | ...|+|+|++. .+. +. .....|+.|+... .|.+ ...+...|.|.+...+
T Consensus 19 ~L~C~a~gFyP~~i~v~W~~dg~--~~~-~~~~~~~~p~~d~tyq~~s-------~l~~---~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 19 VLNCYVTGFHPPDIEIRLLKNGV--KIP-KVEQSDLSFSKDWTFYLLK-------STEF---TPTKGDEYACRVRHNS 83 (93)
T ss_pred EEEEEEEEEeCCCCEEEEEECCE--ECC-CcEECcEEECCCCCEEEEE-------EEEE---CCCCCCeEEEEEEECC
Confidence 589999995 4 57889999873 222 21 1112344444432 3433 4567778999998753
No 360
>PHA02633 hypothetical protein; Provisional
Probab=96.99 E-value=0.0022 Score=34.83 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=26.4
Q ss_pred EEEEeeeeecCCEEEEEEcccC---CeeEEEEEEeec
Q psy13371 151 YLLIQQAELKDSGKYSCSPSNA---DVASVYVHVLNG 184 (212)
Q Consensus 151 ~l~i~~~~~~d~g~y~C~~~n~---~~~~~~~~v~~~ 184 (212)
.|.|-+...+|+|.|.|...|+ ...++.+.|..+
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 3889999999999999999987 445555555443
No 361
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=96.97 E-value=0.0078 Score=36.46 Aligned_cols=60 Identities=18% Similarity=0.345 Sum_probs=35.5
Q ss_pred eeEeeeCCC-CC-ceEEEEeeCcceeeeec----ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL-LP-TRVSWIRHRDIHILTVG----SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. |. ..++|+|++. .+..+ ......|+.|.... .|.+ ...+...|.|.+...+
T Consensus 18 ~L~C~~~gFyP~~i~v~W~~~g~--~~~~~~~~~~~~~~~dgTy~~~s-------~L~~---~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 18 LLVCHVWGFYPPEITVKWFKNGQ--EETEGVVSTELIPNGDWTYQILV-------MLET---TPSRGDTYTCVVEHSS 83 (94)
T ss_pred EEEEEEeeecCCCCEEEEEECCe--ecCCCceecceEECCCCcEEEEE-------EEEE---cCCCCCEEEEEEEeCC
Confidence 689999995 54 5889999874 22111 11112233444432 3443 3345668999998753
No 362
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=96.91 E-value=0.1 Score=39.72 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=46.2
Q ss_pred eeeCCCcEEEEeEEee-CCCCCceEEEEEcCeEEE-------------eeCCCCceeEEeec----CceEEEEEEEeeee
Q psy13371 97 HVDEGSTINLTCSIKY-SPEPPAYIFWYHHDEVIS-------------YDSSRGGVSVITEK----GEVTTSYLLIQQAE 158 (212)
Q Consensus 97 ~~~~g~~~~l~C~~~~-~~~p~~~v~W~~~~~~~~-------------~~~~~~~~~~~~~~----~~~~~~~l~i~~~~ 158 (212)
.+..|..+.+.|..+- ..+...+..|+..+-+.. .+......+.+... .....++|+|.++.
T Consensus 275 ~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~ 354 (500)
T PHA02914 275 MLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAH 354 (500)
T ss_pred EeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEE
Confidence 4566999999998863 223444578987653321 01011111111111 12234679999999
Q ss_pred ecCCEEEEEEcccC
Q psy13371 159 LKDSGKYSCSPSNA 172 (212)
Q Consensus 159 ~~d~g~y~C~~~n~ 172 (212)
.+..|-|+|.|...
T Consensus 355 I~N~GCY~~~a~~g 368 (500)
T PHA02914 355 INNAGCYEAQAFMG 368 (500)
T ss_pred EEcCCceEEEEecC
Confidence 99999999999864
No 363
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.85 E-value=0.0095 Score=36.07 Aligned_cols=60 Identities=17% Similarity=0.307 Sum_probs=36.7
Q ss_pred eeEeeeCCC-C-CceEEEEeeCcceeeeec----ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRHRDIHILTVG----SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. | .-.|+|+|++. .+..+ ......|+.|.... .|.+. +.+...|+|.+...+
T Consensus 19 tL~C~a~gFyP~~I~v~W~~~g~--~~~~~~~~~~~~~~~Dgty~~~s-------~L~v~---~~~~~~ytC~V~H~~ 84 (94)
T cd05767 19 TLICFVDNFFPPVLNVTWLKNGV--PVTDGVSETRYYPRQDLSFQKFS-------YLNFT---PEEGDIYSCIVEHWG 84 (94)
T ss_pred EEEEEEEEEECCcCEEEEEECCe--EccCceEEeeeEeCCCCcEEEEE-------EEEEE---CCCCCeEEEEEEeCC
Confidence 589999995 5 57889999873 22211 11122345555542 45543 346668999998753
No 364
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.83 E-value=0.0069 Score=36.76 Aligned_cols=64 Identities=13% Similarity=0.186 Sum_probs=36.9
Q ss_pred eeEeeeCCC-C-CceEEEEeeCcceeeee--cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRHRDIHILTV--GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. | ...|+|+|++.. .... .......++.|.... .|.+..-.-.....|+|.+...+
T Consensus 20 ~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s-------~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 20 TLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASS-------QLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred EEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEE-------EEEEeHHHcCCCCcEEEEEEeCC
Confidence 689999996 5 568899998742 1110 011111245555543 45554432223567999998754
No 365
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.78 E-value=0.0084 Score=33.49 Aligned_cols=59 Identities=22% Similarity=0.300 Sum_probs=38.0
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC-CeeEEE
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA-DVASVY 178 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~-~~~~~~ 178 (212)
..+.+.|.|... -. +.|++ |....... . .+|.+.....+-.|.|.|.+.+. ....+.
T Consensus 5 ~~~~V~L~C~~~----ts--i~W~k-G~~~~~~~----------~-----~tlnLGs~~~DPRG~Y~C~~s~~~~~~~LQ 62 (69)
T cd07691 5 SEGKVFLKCNGA----TN--ITWKK-GKEILEVS----------N-----TLLDLGSRINDPRGTYSCKESEPNKEKTLQ 62 (69)
T ss_pred cCceEEEEecCC----Cc--EEEec-Cccccccc----------c-----cEEeccCcccCCCcceEecCccCCCcEEEE
Confidence 345789999651 23 99998 54331110 0 23888888889999999999873 344444
Q ss_pred EE
Q psy13371 179 VH 180 (212)
Q Consensus 179 ~~ 180 (212)
+.
T Consensus 63 Vy 64 (69)
T cd07691 63 VY 64 (69)
T ss_pred EE
Confidence 43
No 366
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.77 E-value=0.013 Score=36.87 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=37.0
Q ss_pred eeEeeeCCC-CC-ceEEEEeeCcceeeeecce----eeec-CCceEEEeeCCCCeEEEEEcccCCCC-CEEEEEEecCCC
Q psy13371 2 LHQRKLKGL-LP-TRVSWIRHRDIHILTVGSY----TYTS-DQRFSAIHRREGDEWTLHIKWAQKRD-AGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~~~----~~~~-~~r~~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. |. ..|.|+|++. .+..+.. .... ++.|+... .|.|......+ ...|.|.+...+
T Consensus 22 tL~Cla~gFyP~~I~V~W~kng~--~l~~g~~~~~~~~~~~~gTYs~~S-------~L~v~~~~w~~~~~~ytC~V~H~g 92 (115)
T cd05769 22 TLVCLATGFYPDHVSLSWKVNGK--EVTDGVATDPQALRENTSTYSISS-------RLRVSATEWFNPRNTFTCIVQFYG 92 (115)
T ss_pred EEEEEEEeEeCCCcEEEEEECCE--ECCCCcccccceecCCCCeEEEEE-------EEEEChHHhccCCCeEEEEEEEeC
Confidence 689999996 54 5899999773 2221110 1111 13444442 56665444334 567999998753
No 367
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.71 E-value=0.023 Score=34.47 Aligned_cols=71 Identities=21% Similarity=0.279 Sum_probs=42.1
Q ss_pred eeeeCCCcEEE-EeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 96 LHVDEGSTINL-TCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 96 ~~~~~g~~~~l-~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..+.+|..+.+ .|.+.+. .|.+++.|+.+..... ........++.. ..+.+.+.....+|.-.++|.+.++
T Consensus 11 ~~~~~g~~~~vA~C~sa~g-kPaa~IsW~~~~~G~~-----~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~ 83 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEG-RPAADVTWETNVYGTS-----ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHP 83 (97)
T ss_pred eEeecCcceeEEEEEccCC-ccCCEeEEeCCCCCcc-----ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCc
Confidence 45677888888 8988655 5777799997532211 001111122222 2344666544555666999999987
No 368
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.69 E-value=0.0053 Score=34.00 Aligned_cols=47 Identities=13% Similarity=0.201 Sum_probs=28.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|+|...+.. +.|.+++. .... .+..+.+.+-. +++|.|.|.+.+.
T Consensus 10 VtlTCP~~~~~---i~W~~n~~--~~~g-------------------~~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 10 VTVTCPLSGDD---IKWKKNDQ--VSQG-------------------SDEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EEEECCCCCCC---ceEEeCCc--cCCC-------------------CCceEEeeccC-CCCceEEEEeCCC
Confidence 46889865332 99999872 2210 11123334444 8999999998753
No 369
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.67 E-value=0.0026 Score=45.21 Aligned_cols=48 Identities=21% Similarity=0.298 Sum_probs=36.4
Q ss_pred CCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 11 LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 11 p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
.+|...|..+++. .++ .+++..+. +.+.|.+.+.+.+++|.|+|....
T Consensus 11 iDP~y~W~GP~g~-~l~-------gn~~~nIT-----~TG~L~~~~F~esmSG~YTCtLsY 58 (271)
T PF07354_consen 11 IDPTYLWTGPNGK-PLS-------GNSYVNIT-----ETGKLMFKNFQESMSGSYTCTLSY 58 (271)
T ss_pred CCCceEEECCCCc-ccC-------CCCeEEEc-----cCceEEeeccccccCCceEEEEEE
Confidence 5789999987753 332 23455665 566799999999999999998764
No 370
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.65 E-value=0.0095 Score=36.67 Aligned_cols=65 Identities=11% Similarity=0.209 Sum_probs=35.9
Q ss_pred CeeEeeeCCC-C-CceEEEEeeCcceeeeecc---e-eee--cCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGL-L-PTRVSWIRHRDIHILTVGS---Y-TYT--SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~---~-~~~--~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|. | ...|+|+|++. .+..... . ... .++.|+... .|.+..-...+...|+|.+...
T Consensus 19 ~tL~C~a~gFyP~~i~v~W~k~g~-~~~~~~~~~~~~~~~~~~dgTy~~~s-------~L~v~~~~w~~~~~ytC~V~H~ 90 (102)
T cd05768 19 ATLTCLVKGFSPSDIFVKWLQNGQ-PLSKQKYVTTAPMQEPGGNESYFLYS-------KLTVSAEDWNAGDVFTCVVGHE 90 (102)
T ss_pred eEEEEEEeeEeCCCCEEEEEECCE-ECCcccccccCcccccCCCCeEEEEE-------EEEEcHHHhcCCCcEEEEeEeC
Confidence 3689999995 5 34789999873 2111110 0 000 124444432 4555333333556799999875
Q ss_pred C
Q psy13371 73 P 73 (212)
Q Consensus 73 ~ 73 (212)
+
T Consensus 91 ~ 91 (102)
T cd05768 91 A 91 (102)
T ss_pred C
Confidence 3
No 371
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.63 E-value=0.016 Score=35.37 Aligned_cols=64 Identities=13% Similarity=0.097 Sum_probs=37.2
Q ss_pred eeEeeeCCC--C-CceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL--L-PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~--p-~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. | ...|.|.+++..... ........++.|.+.. .|.|..-.-.....|+|++.+.+
T Consensus 23 tLtClV~~f~~P~~i~V~W~~~g~~~~~-~t~~~~~~dgTys~~S-------~L~v~~~~W~~g~~ytC~V~H~~ 89 (99)
T cd04986 23 SLTCTLSGLRDPEGAVFTWTPSGGKEAV-QTSAESDQCGCYSVSS-------VLPGCAEEWNKGEPFACTVTHPE 89 (99)
T ss_pred EEEEEEeccCCCCCeEEEEEECCccCcE-EcCcccCCCCCEEEEE-------EEEeCHHHhcCCCeEEEEEECCC
Confidence 689999994 3 468999998753111 1111222345555553 46665332233345999998753
No 372
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.45 E-value=0.026 Score=34.25 Aligned_cols=72 Identities=14% Similarity=0.214 Sum_probs=40.6
Q ss_pred eeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCE-EEEEEccc
Q psy13371 97 HVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSG-KYSCSPSN 171 (212)
Q Consensus 97 ~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~n 171 (212)
.+.+|..+++.|.+.+. |.....+.|+++...+..+..... ............+++... .+|.| .|.|.|.-
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~--~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L 84 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLED--MDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKL 84 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccc--cccCCCCCcceeEEEecc-hhhCCcEEEEEEEE
Confidence 35789999999999753 333467899887766532211100 000000111123555443 56666 99999864
No 373
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.34 E-value=0.042 Score=33.36 Aligned_cols=60 Identities=8% Similarity=-0.002 Sum_probs=36.2
Q ss_pred EeeeC-CCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 4 QRKLK-GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 4 ~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
.|.+. |.|...|.|+.+..+... .......++.+++.. .+.+...+..|.-.++|.+.+.
T Consensus 23 ~C~sa~gkPaa~IsW~~~~~G~~~--~~~~~~~ngT~TV~S-------~~~l~p~r~d~G~~vtC~V~H~ 83 (97)
T cd07704 23 ACCAAEGRPAADVTWETNVYGTSE--SHSQEHPNGTTTVTS-------EYIWVPSRHANGHPLTCVVSHP 83 (97)
T ss_pred EEEccCCccCCEeEEeCCCCCccc--eeeecCCCCCEEEEE-------EEEEEeCHHHCCcEEEEEEeCc
Confidence 56655 469999999976432211 111222345666663 5666555555556799999875
No 374
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.28 E-value=0.035 Score=33.72 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=17.1
Q ss_pred eeEeeeCCC-C-CceEEEEeeCc
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRHRD 22 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~~~ 22 (212)
.|.|.+.|. | .-.|.|+|++.
T Consensus 20 tL~C~a~gFyP~~I~v~W~kng~ 42 (96)
T cd07697 20 IYLCLLENFFPDVIQVHWREGNS 42 (96)
T ss_pred EEEEEEEEEeCCCeEEEEEECCE
Confidence 589999995 5 56889999873
No 375
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=95.93 E-value=0.053 Score=33.20 Aligned_cols=43 Identities=28% Similarity=0.420 Sum_probs=28.4
Q ss_pred CceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEEEEE
Q psy13371 37 QRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNV 83 (212)
Q Consensus 37 ~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v 83 (212)
.|+.... ++..|.|+.++..|+|.|.-++.+.........+.|
T Consensus 62 ~r~~F~~----enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqV 104 (108)
T PF11465_consen 62 NRFNFTS----ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQV 104 (108)
T ss_dssp HHEEEET----TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEE
T ss_pred ceEeeec----cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEE
Confidence 4565553 567899999999999999999987533333333333
No 376
>PHA03042 CD47-like protein; Provisional
Probab=95.65 E-value=0.094 Score=37.76 Aligned_cols=53 Identities=17% Similarity=0.334 Sum_probs=34.8
Q ss_pred eeEeeeCCC-----CCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 2 LHQRKLKGL-----LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 2 ~l~C~~~~~-----p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
.++|.++.. ....++|.+++. .+...++ . +..+|+++.. ..-.|+|+|++.+.
T Consensus 35 ~IpC~v~n~~~~ni~~~~V~Wkf~~~-~If~~n~---------------t-n~aSL~~~f~-~~l~GNYTCEv~~l 92 (286)
T PHA03042 35 VIVCNLNLLIYYNISNIHINWKFNNK-VIFKKNN---------------T-NTSSLKFNFS-KNLSGNYTCEAINK 92 (286)
T ss_pred EEEeecCChhhcCccceEEEEEeCCe-eEEEecC---------------C-cceEEEEecc-ccCCCceeEEEeec
Confidence 588999885 467899999874 3332221 1 3346776443 34589999999874
No 377
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.12 E-value=0.078 Score=33.99 Aligned_cols=74 Identities=14% Similarity=0.239 Sum_probs=36.5
Q ss_pred eeCCCcEEEEeEEee---CCCCCceEEEEEcCeEEEeeCCCCceeEEe-------ecCceEEEEEEEeeeeecCCEEEEE
Q psy13371 98 VDEGSTINLTCSIKY---SPEPPAYIFWYHHDEVISYDSSRGGVSVIT-------EKGEVTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 98 ~~~g~~~~l~C~~~~---~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~g~y~C 167 (212)
..-++++.|+|.+.. ...+...+.|..++..+-............ .+-.....+|.+...+.- .|.|+|
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence 345788999999853 122445689999887653322211111100 110011134777654444 899999
Q ss_pred EcccC
Q psy13371 168 SPSNA 172 (212)
Q Consensus 168 ~~~n~ 172 (212)
.+...
T Consensus 103 eVt~~ 107 (130)
T PF08204_consen 103 EVTEL 107 (130)
T ss_dssp EEEET
T ss_pred EEEec
Confidence 99765
No 378
>KOG1480|consensus
Probab=94.93 E-value=0.0041 Score=50.69 Aligned_cols=74 Identities=30% Similarity=0.493 Sum_probs=51.4
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEE
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
....+....+..+...++.|...-. .|.+.+.|++++....... ......+.. +.+..+...|.|.|+|.
T Consensus 132 f~~~p~~q~V~~~s~~~l~cr~pe~-~paae~~w~k~e~~~~pd~----n~~~~~d~~-----li~~~arlsd~~nytc~ 201 (909)
T KOG1480|consen 132 FEQSPVGQEVQEETTLQLPCRPPEG-DPKAEVEWLKNEVVIDPDA----NVIRASDHN-----LIISQARLSDSGNYTCE 201 (909)
T ss_pred hccChhhheecccccccccccCccc-chhhhhhccccCCCCCccc----cchhhhcCC-----ccccchhhhhcccceee
Confidence 3444556678888899999987432 3555689999987664311 112222322 88889999999999999
Q ss_pred cccC
Q psy13371 169 PSNA 172 (212)
Q Consensus 169 ~~n~ 172 (212)
|.|-
T Consensus 202 a~ni 205 (909)
T KOG1480|consen 202 ATNI 205 (909)
T ss_pred eehh
Confidence 9874
No 379
>PHA03042 CD47-like protein; Provisional
Probab=94.91 E-value=0.43 Score=34.51 Aligned_cols=61 Identities=25% Similarity=0.359 Sum_probs=38.3
Q ss_pred eCCCcEEEEeEEeeC---CCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 99 DEGSTINLTCSIKYS---PEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 99 ~~g~~~~l~C~~~~~---~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.-++++.+.|.+..- .-....+.|..++...-..+..+ .++|.+ +-...-.|.|+|.+.+.
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn------------~aSL~~-~f~~~l~GNYTCEv~~l 92 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTN------------TSSLKF-NFSKNLSGNYTCEAINK 92 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCc------------ceEEEE-eccccCCCceeEEEeec
Confidence 347789999998531 11244589999988664322111 123555 34455689999999875
No 380
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=94.81 E-value=0.16 Score=38.06 Aligned_cols=23 Identities=17% Similarity=0.415 Sum_probs=20.6
Q ss_pred cEEEEeEEeeCCCCCceEEEEEc
Q psy13371 103 TINLTCSIKYSPEPPAYIFWYHH 125 (212)
Q Consensus 103 ~~~l~C~~~~~~~p~~~v~W~~~ 125 (212)
.+.|.|.+.+..+..+.+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999998878888999999
No 381
>PHA03269 envelope glycoprotein C; Provisional
Probab=94.76 E-value=1.6 Score=34.46 Aligned_cols=60 Identities=20% Similarity=0.288 Sum_probs=31.0
Q ss_pred EeeeCCC-C--CceEEEEeeCcceeee-e--cceeeecCCceEEEeeCCCCeEEEEEcccCCCC--CEEEEEEecC
Q psy13371 4 QRKLKGL-L--PTRVSWIRHRDIHILT-V--GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRD--AGVYECQLST 71 (212)
Q Consensus 4 ~C~~~~~-p--~~~v~W~~~~~~~~~~-~--~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d--~G~Y~C~~~~ 71 (212)
.|.+.++ | .-.+.|+++++ .+.. . .......++.|+..+ .|++......| .-..+|.+.-
T Consensus 348 tC~vA~YYPp~SvrlrWf~ng~-~V~~~~it~t~~~~~dGlFSrVS-------TLtlp~~~~~d~~PPsLrCeV~W 415 (566)
T PHA03269 348 YCKVNKYYPPHSVIVKWTSNFG-NIGKNFITDAIKENADGLFSSVS-------ALHIPAQKNADYPPPAIQCNVLW 415 (566)
T ss_pred EEEeeeecCCCceEEEEEeCCc-ccCccccccceeecCCCceEEEE-------EEeccCccccCCCCCCceEEEEE
Confidence 6888886 4 35889999864 2221 0 111223345555443 45553322222 3456998764
No 382
>PHA02982 hypothetical protein; Provisional
Probab=94.54 E-value=1.1 Score=31.31 Aligned_cols=118 Identities=11% Similarity=0.136 Sum_probs=65.3
Q ss_pred CeeEeeeCCCC-CceEEEEeeCcceeeee--cceeee-----cC---CceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLKGLL-PTRVSWIRHRDIHILTV--GSYTYT-----SD---QRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~~~p-~~~v~W~~~~~~~~~~~--~~~~~~-----~~---~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|+|...+.. -....|++.++..+... +..... .+ ..+.++ .+.+..+|+|.++..+..|.|+|++
T Consensus 42 V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~s--v~g~~STLTIkk~~i~N~GCYtc~~ 119 (251)
T PHA02982 42 VKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALS--VSGNSSTFTMKKPDPQNLGCFTCEA 119 (251)
T ss_pred EEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEE--EeccceeEEeccCCcccCCceEEEE
Confidence 47999976654 46789998664322211 111111 11 112222 3446678999999999999999999
Q ss_pred cCCC-cee-EEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe
Q psy13371 70 STQP-VRS-FFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE 127 (212)
Q Consensus 70 ~~~~-~~~-~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~ 127 (212)
..+. ..+ ...=|.|+....... .-.-.....+.|-+-+...+. -.|...|-
T Consensus 120 ks~~~k~E~c~kCl~V~~~~V~~~-----W~e~nNeT~V~CyVgS~~~dv--p~W~V~GV 172 (251)
T PHA02982 120 KDAEGKEETCEKCLEIQKEDILYV-----VEEHNNETIITCFVGSKHGDV--PRFIVAGI 172 (251)
T ss_pred ecCCCchheeheeeeEecceEEEE-----EEecCCeEEEEEEEEeccCCC--ccEEEeeE
Confidence 8742 222 122233322221110 112234568889886654453 27877664
No 383
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.43 E-value=0.065 Score=38.39 Aligned_cols=44 Identities=27% Similarity=0.419 Sum_probs=32.6
Q ss_pred EEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEccc
Q psy13371 120 IFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 120 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
+.|...+.... .......+++.|. |.+.+...+++|.|+|....
T Consensus 15 y~W~GP~g~~l---~gn~~~nIT~TG~-----L~~~~F~esmSG~YTCtLsY 58 (271)
T PF07354_consen 15 YLWTGPNGKPL---SGNSYVNITETGK-----LMFKNFQESMSGSYTCTLSY 58 (271)
T ss_pred eEEECCCCccc---CCCCeEEEccCce-----EEeeccccccCCceEEEEEE
Confidence 89997654432 2333456666665 99999999999999998864
No 384
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=93.84 E-value=0.74 Score=26.90 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=16.5
Q ss_pred EEEEcccCCCCCEEEEEEecC
Q psy13371 51 TLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 51 ~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
.+........|+|.+.|.+..
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~ 64 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASD 64 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEcC
Confidence 345567788999999999943
No 385
>PHA03052 Hypothetical protein; Provisional
Probab=93.71 E-value=0.65 Score=25.84 Aligned_cols=40 Identities=23% Similarity=0.506 Sum_probs=29.6
Q ss_pred CCceeeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEee
Q psy13371 93 SPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYD 132 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~ 132 (212)
|....+..|..+++.|.+.-. +...+.+.|..++...+..
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~ 44 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEED 44 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEecc
Confidence 355678889999999999643 3345668999888877544
No 386
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=92.94 E-value=2.3 Score=29.88 Aligned_cols=106 Identities=18% Similarity=0.212 Sum_probs=47.1
Q ss_pred ceEEEEeeCcceeeee---cceeeecCCceEEEeeCCCCeEEEEE-cccCCCCCEEEEEEecCC-CceeEEEEEEEeccc
Q psy13371 13 TRVSWIRHRDIHILTV---GSYTYTSDQRFSAIHRREGDEWTLHI-KWAQKRDAGVYECQLSTQ-PVRSFFVNLNVVVPT 87 (212)
Q Consensus 13 ~~v~W~~~~~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~~L~i-~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~ 87 (212)
-.+.|+.++. .+.+. .......++.++..+ .|.+ .+...+..-..+|++.-. +..+... ++-...|
T Consensus 7 ~~~~Wf~dg~-~v~~~~~~~~~~~~~~G~~s~vS-------tl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r-~~a~~~P 77 (211)
T PF02124_consen 7 VRFRWFEDGN-PVEPRFIRDSSQVWSDGLFSRVS-------TLTLPGNSADSPPPSIRCQVTWYRDSVSETR-FNATATP 77 (211)
T ss_pred EEEEEEECCE-eCCccceeeEEEEecCCcEEEEE-------EEEecCCCCCCCCCcceEEEEEccCCCeeeE-eeccccc
Confidence 4789999884 22211 111222233343332 4556 233333445688987643 2122111 1111222
Q ss_pred ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEE
Q psy13371 88 AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVI 129 (212)
Q Consensus 88 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~ 129 (212)
..... +...+.- ..-...|.+.=-|.....+.|..++...
T Consensus 78 ~Vy~~-P~vsv~F-~~g~AVC~A~CVP~~~v~l~W~v~d~~~ 117 (211)
T PF02124_consen 78 SVYPK-PRVSVRF-EDGYAVCTARCVPRGNVTLRWSVGDDPS 117 (211)
T ss_pred ceecC-CEEEEEe-cCCEEEEEcceeeCCCeEEEEEECCccC
Confidence 22211 2222211 2235556664444444568999877643
No 387
>PHA02982 hypothetical protein; Provisional
Probab=91.61 E-value=0.54 Score=32.67 Aligned_cols=75 Identities=13% Similarity=0.367 Sum_probs=43.9
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe-EEEeeCCC--------------CceeEEeecCceEEEEEEEeeeee
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-VISYDSSR--------------GGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~-~~~~~~~~--------------~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
++....++.+.|.|...... ......|..+.. .+...... .......-.+ ..|+|+|.++..
T Consensus 33 dv~a~vd~~V~L~C~~~~~~-~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g--~~STLTIkk~~i 109 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDAD-EISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSG--NSSTFTMKKPDP 109 (251)
T ss_pred hhhccCCCcEEEEecCCCcc-hhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEec--cceeEEeccCCc
Confidence 34456789999999864332 222367876432 22211000 0111111122 236799999999
Q ss_pred cCCEEEEEEcccC
Q psy13371 160 KDSGKYSCSPSNA 172 (212)
Q Consensus 160 ~d~g~y~C~~~n~ 172 (212)
+..|-|+|.+...
T Consensus 110 ~N~GCYtc~~ks~ 122 (251)
T PHA02982 110 QNLGCFTCEAKDA 122 (251)
T ss_pred ccCCceEEEEecC
Confidence 9999999999863
No 388
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=91.29 E-value=0.82 Score=28.14 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=18.6
Q ss_pred EEEEeeeeecCCEEEEEEcccC
Q psy13371 151 YLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 151 ~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+|.|+.++..|+|.|...+++.
T Consensus 72 aLlIkaAq~qDSG~Y~LEvT~~ 93 (108)
T PF11465_consen 72 ALLIKAAQPQDSGLYCLEVTNE 93 (108)
T ss_dssp EEEESS-SGGG-EEEEEEEEET
T ss_pred eEEEeecCcccCceEEEEEEcC
Confidence 5999999999999999999986
No 389
>KOG4597|consensus
Probab=90.29 E-value=0.51 Score=36.95 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=48.3
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEc---CeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEccc
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHH---DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
...+..+++..++|-+.|.+.+. |.|.+. +..+.+... ..........+..|.|-+....|+|.|+|.+.+
T Consensus 205 ~w~vg~wetcS~tCg~~G~q~r~--V~c~qv~anr~~vv~~~n----q~~e~p~vtstcql~ic~ewq~~a~w~tCs~rc 278 (560)
T KOG4597|consen 205 EWFVGDWETCSSTCGVQGRQYRV--VTCEQVFANRENVVMRPN----QTVENPVVTSTCQLVICNEWQADAGWYTCSARC 278 (560)
T ss_pred hhhcccchhhcccccccCCcCce--eeeehhhccccceeecCc----cccCCcceeeeeeEEEcchhhcCCCceeecccc
Confidence 34577899999999999887777 899753 333322210 001011111234599999999999999999998
Q ss_pred C
Q psy13371 172 A 172 (212)
Q Consensus 172 ~ 172 (212)
.
T Consensus 279 g 279 (560)
T KOG4597|consen 279 G 279 (560)
T ss_pred c
Confidence 7
No 390
>PHA03270 envelope glycoprotein C; Provisional
Probab=90.24 E-value=7.5 Score=30.45 Aligned_cols=19 Identities=11% Similarity=0.169 Sum_probs=14.5
Q ss_pred EeeeCCC-C--CceEEEEeeCc
Q psy13371 4 QRKLKGL-L--PTRVSWIRHRD 22 (212)
Q Consensus 4 ~C~~~~~-p--~~~v~W~~~~~ 22 (212)
.|.+.++ | .-.+.|++++.
T Consensus 240 tC~va~YYPp~Sv~lrWf~ng~ 261 (466)
T PHA03270 240 TCVAANYYPGDRAAFRWFEGGD 261 (466)
T ss_pred EEEeeeecCCCceEEEEEeCCc
Confidence 6888886 4 35889999884
No 391
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=89.74 E-value=7.5 Score=30.16 Aligned_cols=121 Identities=18% Similarity=0.178 Sum_probs=63.2
Q ss_pred eeEeeeCC---CCCceEEEEeeCcceeeee-cce--------eeecCCceEEEee----CCCCeEEEEEcccCCCCCEEE
Q psy13371 2 LHQRKLKG---LLPTRVSWIRHRDIHILTV-GSY--------TYTSDQRFSAIHR----REGDEWTLHIKWAQKRDAGVY 65 (212)
Q Consensus 2 ~l~C~~~~---~p~~~v~W~~~~~~~~~~~-~~~--------~~~~~~r~~~~~~----~~~~~~~L~i~~~~~~d~G~Y 65 (212)
-|.|.++- ..-....|+..+- .+-+. +.. .+..+..|.++.. ..-...+|+|.++..+.+|.|
T Consensus 283 ~~~c~~s~~~~e~i~~~~w~~t~~-~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~I~N~GCY 361 (500)
T PHA02914 283 DIECFFSMCGNENISNAKWIDTGF-EIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAHINNAGCY 361 (500)
T ss_pred EEEEEEeecCCcccccceEEecCC-cccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEEEEcCCce
Confidence 46788766 2345778986542 11100 000 1112345555532 122356899999999999999
Q ss_pred EEEecCCC-ceeEEEEEEEecccceeeCCCceeeeC-CCcEEEEeEEeeCCCCCceEEEEEcCeEE
Q psy13371 66 ECQLSTQP-VRSFFVNLNVVVPTAEILGSPDLHVDE-GSTINLTCSIKYSPEPPAYIFWYHHDEVI 129 (212)
Q Consensus 66 ~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~-g~~~~l~C~~~~~~~p~~~v~W~~~~~~~ 129 (212)
+|++..+. ...+..=|.|.. .+.. ..-.+ .....+.|-+-.....+..+.|..+|-..
T Consensus 362 ~~~a~~g~~~~ec~~Cl~V~d--~V~f----~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~ 421 (500)
T PHA02914 362 EAQAFMGKFKEECRHCFKVAD--HVFF----KWNTEGDNETKVACYAAQYDMQPFSILWKSNGVSF 421 (500)
T ss_pred EEEEecCcchhhhhhheEecc--EEEE----EEEeccCceEEEEEEEEecccCCceeEEEEccEEe
Confidence 99998752 112211122211 0110 11222 33567788775442223247999887544
No 392
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=88.34 E-value=3.8 Score=24.49 Aligned_cols=67 Identities=19% Similarity=0.352 Sum_probs=37.1
Q ss_pred CceeeeCCCcEEEEeEEeeCCC---CCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEE
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPE---PPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~---p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
+...+..|..++..|.....-. ....+.|..++..++ ...+....++. +.+++.+......-.|-|.
T Consensus 11 ~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP-----~~qy~~in~~~---SsVT~~~~~~~~~~L~cC~ 80 (89)
T PF06328_consen 11 PSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIP-----GSQYRVINDTV---SSVTLPNLNPTGATLFCCK 80 (89)
T ss_dssp SSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCEST-----CGCEEEESTTE---EEEEESS--SSEEEEEEEE
T ss_pred CCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECC-----hhHcceeCCeE---EEEEEccCCCCCceEEEEE
Confidence 4456888999999999863322 344689998887541 12222222222 4467666655544566665
No 393
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=87.82 E-value=7.1 Score=31.06 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=13.5
Q ss_pred CeEEEEEcccCCCCCEEEEEEecCCC--ceeEEEEEEEecccce--------------------eeCCCceeeeCCCcEE
Q psy13371 48 DEWTLHIKWAQKRDAGVYECQLSTQP--VRSFFVNLNVVVPTAE--------------------ILGSPDLHVDEGSTIN 105 (212)
Q Consensus 48 ~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~~~~--------------------~~~~~~~~~~~g~~~~ 105 (212)
+...|.|.+++.+|+|.|+-...+.+ .....+.|.|..+... +.........+|+++.
T Consensus 87 ~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~ 166 (439)
T PF02480_consen 87 NKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFH 166 (439)
T ss_dssp -----------------------------------------------------------SEEEEEE--SEEE--TT--EE
T ss_pred cCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEE
Confidence 44579999999999999999887643 3344455565432111 0112234556788887
Q ss_pred EEeEEeeCC----CCCceEEEEEc
Q psy13371 106 LTCSIKYSP----EPPAYIFWYHH 125 (212)
Q Consensus 106 l~C~~~~~~----~p~~~v~W~~~ 125 (212)
+.-.+.... +-...+.|+.-
T Consensus 167 ~~v~l~~~~~d~~~f~~~i~W~~~ 190 (439)
T PF02480_consen 167 LSVHLQSEAHDDPPFSLEIDWYYM 190 (439)
T ss_dssp ---EEEEEESSS--EEEEEEEEEE
T ss_pred EeEEEEeccCCCCCeeEEEEEEEe
Confidence 776654321 11345789864
No 394
>PHA03273 envelope glycoprotein C; Provisional
Probab=87.50 E-value=13 Score=29.55 Aligned_cols=60 Identities=13% Similarity=0.188 Sum_probs=31.2
Q ss_pred EeeeCCC-C--CceEEEEeeCcceee-ee---cceeeecCCceEEEeeCCCCeEEEEEcccCC-CCCEEEEEEecC
Q psy13371 4 QRKLKGL-L--PTRVSWIRHRDIHIL-TV---GSYTYTSDQRFSAIHRREGDEWTLHIKWAQK-RDAGVYECQLST 71 (212)
Q Consensus 4 ~C~~~~~-p--~~~v~W~~~~~~~~~-~~---~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~~ 71 (212)
.|.+.++ | .-.+.|++++. .+. .. .......++.++..+ .|++.+... +..-..+|.+.-
T Consensus 256 ~C~aa~YYPp~Sv~~rWf~dg~-~V~~~~~~~~~~~~~~~gl~T~vS-------tlt~~~~~~~~~PP~lrC~v~W 323 (486)
T PHA03273 256 VCVVASYFPHSSVKLRWYKNAK-EVDFTKYVTNASSVWVDGLITRIS-------TLSIPVDPDEEYTPSLRCSIEW 323 (486)
T ss_pred EEEeeeecCCCceEEEEEeCCe-eccccccceeeEEEecCCceEEEE-------EEeccCcccCCCCCCceEEEEE
Confidence 6888886 4 35889999884 222 11 111112233333332 455554322 333468998764
No 395
>KOG4597|consensus
Probab=86.65 E-value=1.5 Score=34.51 Aligned_cols=61 Identities=16% Similarity=0.070 Sum_probs=40.6
Q ss_pred eEeeeCCCCCceEEEEeeC--c-ceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 3 HQRKLKGLLPTRVSWIRHR--D-IHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 3 l~C~~~~~p~~~v~W~~~~--~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|-+.|.+.+.|.|-+.- + ..++. ...++ ++. .......|.|-+....|+|-|+|.+.+.
T Consensus 216 ~tCg~~G~q~r~V~c~qv~anr~~vv~~-~nq~~---e~p-----~vtstcql~ic~ewq~~a~w~tCs~rcg 279 (560)
T KOG4597|consen 216 STCGVQGRQYRVVTCEQVFANRENVVMR-PNQTV---ENP-----VVTSTCQLVICNEWQADAGWYTCSARCG 279 (560)
T ss_pred ccccccCCcCceeeeehhhccccceeec-Ccccc---CCc-----ceeeeeeEEEcchhhcCCCceeeccccc
Confidence 5788999999999997522 1 12222 11110 111 1224567999999999999999999885
No 396
>PHA03189 UL14 tegument protein; Provisional
Probab=85.09 E-value=14 Score=27.63 Aligned_cols=79 Identities=16% Similarity=0.235 Sum_probs=41.7
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCc--eEE---EEEcCeEEEeeCCCC-------------ceeEEeecCceEEEEEEEee
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPA--YIF---WYHHDEVISYDSSRG-------------GVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~--~v~---W~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~i~~ 156 (212)
...+..|+.+++.|.......|.+ .+. |.-.+..+..+...+ .+....+-+.....+|++ +
T Consensus 61 P~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF-~ 139 (348)
T PHA03189 61 PLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF-R 139 (348)
T ss_pred ccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE-E
Confidence 345778999999999864434432 222 211222222221111 111112222222334555 6
Q ss_pred eeecCCEEEEEEcccCCe
Q psy13371 157 AELKDSGKYSCSPSNADV 174 (212)
Q Consensus 157 ~~~~d~g~y~C~~~n~~~ 174 (212)
+..+.+|.|.|...|..+
T Consensus 140 v~t~taG~Y~CvLrN~tH 157 (348)
T PHA03189 140 VSTSTAGMYECVLRNETH 157 (348)
T ss_pred EEecccceEEEEeccccc
Confidence 777889999999999833
No 397
>KOG1480|consensus
Probab=84.68 E-value=0.36 Score=40.12 Aligned_cols=56 Identities=18% Similarity=0.370 Sum_probs=37.8
Q ss_pred eEee-eCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 3 HQRK-LKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 3 l~C~-~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|. ..+.|.-.++|++++. +..... .+ ....++.+++..++..|.|+|+|++.+-
T Consensus 149 l~cr~pe~~paae~~w~k~e~--~~~pd~-------n~-----~~~~d~~li~~~arlsd~~nytc~a~ni 205 (909)
T KOG1480|consen 149 LPCRPPEGDPKAEVEWLKNEV--VIDPDA-------NV-----IRASDHNLIISQARLSDSGNYTCEATNI 205 (909)
T ss_pred ccccCcccchhhhhhccccCC--CCCccc-------cc-----hhhhcCCccccchhhhhcccceeeeehh
Confidence 4444 4456788999999873 221111 11 1124568899999999999999999873
No 398
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=83.83 E-value=3.6 Score=31.18 Aligned_cols=19 Identities=5% Similarity=0.080 Sum_probs=16.1
Q ss_pred eeEeeeCCC-C-CceEEEEee
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRH 20 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~ 20 (212)
.|+|.+.|. | .-.+.|.|+
T Consensus 218 tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 218 TLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred eEEEEEEeEeCCccEEEEEec
Confidence 589999996 5 568899998
No 399
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=83.76 E-value=6.3 Score=24.09 Aligned_cols=20 Identities=0% Similarity=0.009 Sum_probs=15.6
Q ss_pred eeEeeeCCC-CC--ceEEEEeeC
Q psy13371 2 LHQRKLKGL-LP--TRVSWIRHR 21 (212)
Q Consensus 2 ~l~C~~~~~-p~--~~v~W~~~~ 21 (212)
.++|.+.+. |. ..|.|+|..
T Consensus 19 tv~C~v~~v~P~~~l~v~LlkG~ 41 (99)
T cd07689 19 TVKCEVPDVYPFDRLEIELLKGE 41 (99)
T ss_pred EEEEEecCcccCCceEEEEecCc
Confidence 689999874 54 789999865
No 400
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=83.16 E-value=7.1 Score=22.80 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=16.3
Q ss_pred EEEeeeeecCCEEEEEEc-ccC
Q psy13371 152 LLIQQAELKDSGKYSCSP-SNA 172 (212)
Q Consensus 152 l~i~~~~~~d~g~y~C~~-~n~ 172 (212)
.........|+|.+.|.| .+.
T Consensus 45 ~~~~~~~~~d~G~w~C~a~~~~ 66 (80)
T PF05790_consen 45 VSTFTPTTEDSGTWVCTASDNE 66 (80)
T ss_dssp EEEESBTCGGSEEEEEEEEECT
T ss_pred EEEecCCCCCCEEEEEEEcCCc
Confidence 455566779999999999 554
No 401
>PHA03112 IL-18 binding protein; Provisional
Probab=80.00 E-value=12 Score=24.54 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=21.2
Q ss_pred eeCCCcEEEEeEEeeCCCCCceEEEEEcC
Q psy13371 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHD 126 (212)
Q Consensus 98 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~~ 126 (212)
..+++.+.|.|.+.+.-+....+.|..++
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 35588999999998653344568999665
No 402
>PHA03271 envelope glycoprotein C; Provisional
Probab=77.27 E-value=34 Score=27.00 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=14.4
Q ss_pred EeeeCCC-C--CceEEEEeeCc
Q psy13371 4 QRKLKGL-L--PTRVSWIRHRD 22 (212)
Q Consensus 4 ~C~~~~~-p--~~~v~W~~~~~ 22 (212)
.|.+.++ | .-.+.|++++.
T Consensus 266 tC~vAnYYPP~SvrlrWf~nG~ 287 (490)
T PHA03271 266 SCIVRHFYPPGSVYVSWRQNGN 287 (490)
T ss_pred EEEeeeecCCCceEEEEEeCCc
Confidence 6888886 4 35889999874
No 403
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=71.45 E-value=20 Score=21.76 Aligned_cols=60 Identities=10% Similarity=0.105 Sum_probs=32.3
Q ss_pred Eee-eCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 4 QRK-LKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 4 ~C~-~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
.|. +.|.|...|.|.-+-+..... ......++-+++.. .+.+--....|.-..+|.+...
T Consensus 26 ~CiSa~GrPpa~ItW~t~l~G~~et--q~~~~~~GT~TV~S-------~y~lVPs~~~~gk~lTCvV~h~ 86 (98)
T cd05890 26 TCVSANGKPPSVVRWDTRLKGEAEF--QEIRNQNGTVTVIS-------RYRLVPSREAHKQKLTCIVNYR 86 (98)
T ss_pred EEEcCCCcCCcEeEEEccCCCceee--eeeCCCCCCEEEEE-------EEEEeECHHHcCCEeEEEEEec
Confidence 688 777899999997433211110 01111234444442 2333344555666789988763
No 404
>PHA03283 envelope glycoprotein E; Provisional
Probab=70.16 E-value=58 Score=26.54 Aligned_cols=78 Identities=21% Similarity=0.247 Sum_probs=48.6
Q ss_pred CeEEEEEcccCCCCCEEEEEEecCCC-ceeEEEEEEEecccc---------eeeCC------------CceeeeCCCcEE
Q psy13371 48 DEWTLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVVVPTA---------EILGS------------PDLHVDEGSTIN 105 (212)
Q Consensus 48 ~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~---------~~~~~------------~~~~~~~g~~~~ 105 (212)
+...|+|.+++.+++|.|+--..+.+ .....+.|+|..++. ....| ....-.+|+++.
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~ 211 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFD 211 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCcee
Confidence 34579999999999999999888753 344455666655111 11111 123456788888
Q ss_pred EEeEEeeCC---CCCceEEEEEc
Q psy13371 106 LTCSIKYSP---EPPAYIFWYHH 125 (212)
Q Consensus 106 l~C~~~~~~---~p~~~v~W~~~ 125 (212)
+.-...... +-...+.|+..
T Consensus 212 lsi~l~s~~~d~~fs~~i~Wyy~ 234 (542)
T PHA03283 212 LSVHLESDIGDPSFSATIDWYYM 234 (542)
T ss_pred EeEEEeeccCCCCceEEEEEEEe
Confidence 876665332 22446889864
No 405
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=69.00 E-value=17 Score=25.68 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=28.2
Q ss_pred CCCCceEEEEEcCeEEEeeCCCCceeEEeecC-ceEEEEEEEee-eeecCCEEEEEEcc
Q psy13371 114 PEPPAYIFWYHHDEVISYDSSRGGVSVITEKG-EVTTSYLLIQQ-AELKDSGKYSCSPS 170 (212)
Q Consensus 114 ~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~-~~~~d~g~y~C~~~ 170 (212)
|.....+.|+.++.++........ .....+| -...++|.+.. ...+..-..+|.+.
T Consensus 3 Pp~S~~~~Wf~dg~~v~~~~~~~~-~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~ 60 (211)
T PF02124_consen 3 PPRSVRFRWFEDGNPVEPRFIRDS-SQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVT 60 (211)
T ss_pred CCCcEEEEEEECCEeCCccceeeE-EEEecCCcEEEEEEEEecCCCCCCCCCcceEEEE
Confidence 444557889988887753332222 2222334 33445566622 22233446677653
No 406
>KOG0613|consensus
Probab=67.21 E-value=8.5 Score=34.43 Aligned_cols=119 Identities=16% Similarity=0.125 Sum_probs=68.9
Q ss_pred EEEEEcccCCCCCEEEEEEecCCC-ceeEEEEEEEec------c----------ccee---eCCCceeeeCCCcEEEEeE
Q psy13371 50 WTLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVVV------P----------TAEI---LGSPDLHVDEGSTINLTCS 109 (212)
Q Consensus 50 ~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~------~----------~~~~---~~~~~~~~~~g~~~~l~C~ 109 (212)
....|.+....+.+.|+|...+.+ .....+.-.+.. + +..+ ....++....+..+++.|.
T Consensus 278 ~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~ 357 (1205)
T KOG0613|consen 278 NTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTA 357 (1205)
T ss_pred ccccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeeccc
Confidence 356677778888888999877643 112221111110 1 1011 1112345677888999999
Q ss_pred EeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 110 IKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 110 ~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
..+...|. .+.|+++........ +. ..-..+..++..+.+..+...+.+.|.|.+.|..
T Consensus 358 ~~~~~~p~-~~~~~~~~~~~~~~~--~~--~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~ 416 (1205)
T KOG0613|consen 358 LSGTQKPD-EAQGYHGEEVSSESL--GA--LPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKG 416 (1205)
T ss_pred ccCCcCCc-hheeecccccccccc--cc--cccccccccCcchhhhhcCcccccccccceeccC
Confidence 98876554 478987765332111 10 1111122233457888888899999999999863
No 407
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=65.58 E-value=22 Score=23.96 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=21.5
Q ss_pred CeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 48 DEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 48 ~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
....|.|.+.+++|+|.|.-++.-.
T Consensus 122 ~~~lL~i~~p~~~dsG~Y~lRV~l~ 146 (161)
T PF01688_consen 122 NGVLLRIRNPRPEDSGIYYLRVWLD 146 (161)
T ss_pred cceEEEeCCCCcccceEEEEEEEEC
Confidence 4456899999999999999998765
No 408
>PHA03282 envelope glycoprotein E; Provisional
Probab=63.79 E-value=24 Score=28.18 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=24.7
Q ss_pred CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 36 DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 36 ~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
++|.++. +.+|.|.+++.+|+|.|+-.+...
T Consensus 116 ~~rvs~~------n~tl~l~~a~~~DsG~Y~L~~~~~ 146 (540)
T PHA03282 116 PPRVAVV------NGTLVLREARETDSGMYVLSVSRA 146 (540)
T ss_pred CcceeEe------cceEEEeeccccCCceEEEEecCC
Confidence 4566664 457999999999999999997653
No 409
>PF15096 G6B: G6B family
Probab=62.40 E-value=9.2 Score=26.16 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=21.3
Q ss_pred eecCCEEEEEEcccCCeeEEEEEEeec
Q psy13371 158 ELKDSGKYSCSPSNADVASVYVHVLNG 184 (212)
Q Consensus 158 ~~~d~g~y~C~~~n~~~~~~~~~v~~~ 184 (212)
...|+|+|.|...++......++|+-.
T Consensus 82 s~GDSGTFfCkGr~e~ESRT~LhVLGD 108 (224)
T PF15096_consen 82 SAGDSGTFFCKGRQEEESRTVLHVLGD 108 (224)
T ss_pred hcCCccceEecCcccccceeeeeeecc
Confidence 467999999998888666677888743
No 410
>PHA03290 envelope glycoprotein I; Provisional
Probab=49.35 E-value=58 Score=24.85 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.2
Q ss_pred CeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 48 DEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 48 ~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
....|+|.+.+.+|+|.|.-++.-.+
T Consensus 127 ~~vLL~I~~P~~~DSGiY~LRV~Ldg 152 (357)
T PHA03290 127 AEIIFKINKPGIEDAGIYLLLVQLDH 152 (357)
T ss_pred cceEEEeCCCCcccCeeEEEEEEeCC
Confidence 45578999999999999999988653
No 411
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=48.64 E-value=87 Score=21.55 Aligned_cols=78 Identities=22% Similarity=0.298 Sum_probs=45.4
Q ss_pred EEeEEee-CCCCCceEEEEEcCeEEEeeCCCCceeEEeecC--ceEEEEEEEeeeeecCCEEEEEEcccCCeeEEEEEEe
Q psy13371 106 LTCSIKY-SPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG--EVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVL 182 (212)
Q Consensus 106 l~C~~~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~v~ 182 (212)
-.|..+. ...|. +.|......+..+.-.. .......| ....+...+.+.+..+.-.|.|.+......+....++
T Consensus 112 AvCitseL~s~Pt--itWsVgs~rl~n~gftq-twy~iqPGvCgilrS~v~~~R~~G~~~~~y~c~~~~~Da~t~~~kv~ 188 (226)
T PF05955_consen 112 AVCITSELVSQPT--ITWSVGSDRLRNDGFTQ-TWYGIQPGVCGILRSEVRIPRAEGRDNVDYLCEIRALDAKTSDYKVL 188 (226)
T ss_pred EEEeeccccCCCe--EEEEeccceeecCCccc-eeecccCcceeeEeeeeecccCCCCCcccEEecccccccccceeeec
Confidence 3465542 22355 89998877664332221 11112222 2233456777777888889999998776666666665
Q ss_pred eccc
Q psy13371 183 NGEY 186 (212)
Q Consensus 183 ~~~~ 186 (212)
.+..
T Consensus 189 ~~a~ 192 (226)
T PF05955_consen 189 RNAY 192 (226)
T ss_pred cCcc
Confidence 5554
No 412
>PHA03286 envelope glycoprotein E; Provisional
Probab=43.63 E-value=1.7e+02 Score=23.56 Aligned_cols=77 Identities=12% Similarity=0.006 Sum_probs=47.8
Q ss_pred eEEEEEcccCCCCCEEEEEEecCCC--ceeEEEEEEEecc----cceee---------------CCCceeeeCCCcEEEE
Q psy13371 49 EWTLHIKWAQKRDAGVYECQLSTQP--VRSFFVNLNVVVP----TAEIL---------------GSPDLHVDEGSTINLT 107 (212)
Q Consensus 49 ~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~----~~~~~---------------~~~~~~~~~g~~~~l~ 107 (212)
...|+|.+++.+++|.|+--..++. .....+.+.|... ++... ......-.+|+++.+.
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vS 205 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDAS 205 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEE
Confidence 3469999999999999999888763 3444556666421 21111 1223455678988776
Q ss_pred eEEeeC---CCCCceEEEEEc
Q psy13371 108 CSIKYS---PEPPAYIFWYHH 125 (212)
Q Consensus 108 C~~~~~---~~p~~~v~W~~~ 125 (212)
-..... .+-...+.|+.-
T Consensus 206 v~l~~~~~d~~Fsl~i~W~y~ 226 (492)
T PHA03286 206 VTAHLTNWAGAFSLEFRVLFL 226 (492)
T ss_pred EEEeecccCCCceEEEEEEEe
Confidence 655422 122446889864
No 413
>KOG0613|consensus
Probab=43.19 E-value=21 Score=32.14 Aligned_cols=148 Identities=11% Similarity=0.010 Sum_probs=76.7
Q ss_pred eeEeeeCCCCCce-EEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 2 LHQRKLKGLLPTR-VSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 2 ~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
.+.|...+.+.|. +.|++... ...... .. ....+.....+.+.|..+...+.+.|.|.+.|.........
T Consensus 353 ~m~~~~~~~~~p~~~~~~~~~~--~~~~~~-----~~--~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~ 423 (1205)
T KOG0613|consen 353 EMPTALSGTQKPDEAQGYHGEE--VSSESL-----GA--LPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIA 423 (1205)
T ss_pred eecccccCCcCCchheeecccc--cccccc-----cc--cccccccccCcchhhhhcCcccccccccceeccCCcccccc
Confidence 4667777776554 78887652 111000 00 00111223345678889999999999999998642322221
Q ss_pred -EEEecccce-----eeCCCce--eeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEE
Q psy13371 81 -LNVVVPTAE-----ILGSPDL--HVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152 (212)
Q Consensus 81 -l~v~~~~~~-----~~~~~~~--~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 152 (212)
..+...... ..-.... .+...+.+.+.|...+++.|...++|++++...... ......... .+|
T Consensus 424 ~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~-----s~~l~r~~~---tsl 495 (1205)
T KOG0613|consen 424 ESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDR-----SVTLTRDVL---TSL 495 (1205)
T ss_pred hhhcccccCCCCCccccccccccccccCCcccccccCCCCccccceeEeeccCCcccccc-----cccccccch---hhh
Confidence 122222211 1111111 233346788889888777664456777666543111 111111111 236
Q ss_pred EEeeeeecCCEEEE
Q psy13371 153 LIQQAELKDSGKYS 166 (212)
Q Consensus 153 ~i~~~~~~d~g~y~ 166 (212)
.+......+.+.|.
T Consensus 496 Llk~~~~~~~A~~~ 509 (1205)
T KOG0613|consen 496 LLKVASLSDGAQYT 509 (1205)
T ss_pred eeeccCCCccchhh
Confidence 66666777777774
No 414
>KOG3611|consensus
Probab=43.16 E-value=59 Score=28.07 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=19.0
Q ss_pred EEEEcccCCCCCEEEEEEecCCC
Q psy13371 51 TLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 51 ~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.+.+..++..|+|.|.|.+....
T Consensus 613 ~lll~~~q~~~~G~y~c~~~e~~ 635 (737)
T KOG3611|consen 613 GLVLLSVQKLDGGTYPCYADESS 635 (737)
T ss_pred ceeEEEEeeccCcccccccccCc
Confidence 36677888999999999998754
No 415
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=42.05 E-value=81 Score=19.27 Aligned_cols=61 Identities=16% Similarity=0.361 Sum_probs=32.3
Q ss_pred cEEEEeEEeeCCCCCceEEEEEc--CeEEEee--CCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 103 TINLTCSIKYSPEPPAYIFWYHH--DEVISYD--SSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 103 ~~~l~C~~~~~~~p~~~v~W~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.+.-.|.+... .|.+.+.|.-+ |.. +.+ ....+.... .+.+.+-.....|.-..+|.+.+.
T Consensus 22 v~VA~CiSa~G-rPpa~ItW~t~l~G~~-etq~~~~~~GT~TV-------~S~y~lVPs~~~~gk~lTCvV~h~ 86 (98)
T cd05890 22 MLVATCVSANG-KPPSVVRWDTRLKGEA-EFQEIRNQNGTVTV-------ISRYRLVPSREAHKQKLTCIVNYR 86 (98)
T ss_pred EEEEEEEcCCC-cCCcEeEEEccCCCce-eeeeeCCCCCCEEE-------EEEEEEeECHHHcCCEeEEEEEec
Confidence 35667886544 46667999843 221 111 111111111 233444455556666999999875
No 416
>PHA03282 envelope glycoprotein E; Provisional
Probab=41.41 E-value=59 Score=26.16 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=21.2
Q ss_pred CeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 48 DEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 48 ~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
++..|++.|+..+++|.|.|.+...
T Consensus 331 n~VdL~F~nAp~saSGLYVfVl~yN 355 (540)
T PHA03282 331 HTVNLQLRDASEASGGLYVCVVYVN 355 (540)
T ss_pred CccceEecCCCcccCceEEEEEEEC
Confidence 3447999999999999999998754
No 417
>PHA03292 envelope glycoprotein I; Provisional
Probab=39.57 E-value=91 Score=24.35 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=22.6
Q ss_pred CCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 47 GDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 47 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.....|.|.+.+.+|+|.|.-++.-.+
T Consensus 125 e~~vLL~I~~P~~~DSGiY~LRV~Ldg 151 (413)
T PHA03292 125 ETNVLLNITGPQPADSGAYILRVKLDH 151 (413)
T ss_pred CcceEEEeCCCCcccceeEEEEEEeCC
Confidence 345678999999999999999988653
No 418
>PHA02935 Hypothetical protein; Provisional
Probab=38.45 E-value=1.4e+02 Score=20.97 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=17.1
Q ss_pred EEEEcccCCCCCEEEEEEecCC
Q psy13371 51 TLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 51 ~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
-|.|..++.+|+|.|.-...-.
T Consensus 103 clnisslryedsgsykgvshlk 124 (349)
T PHA02935 103 CLNISSLRYEDSGSYKGVSHLK 124 (349)
T ss_pred EeeccceeeccCCcccCchhhc
Confidence 4678889999999998765543
No 419
>PHA03289 envelope glycoprotein I; Provisional
Probab=38.34 E-value=91 Score=23.73 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=21.9
Q ss_pred CeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 48 DEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 48 ~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.+..|.|.+.+++|+|.|.-++.-.+
T Consensus 120 ~gvLL~I~~Pr~~DSGiYyLRV~Ldg 145 (352)
T PHA03289 120 KGLLLTIIEPRMSDTGIYYIRVSLAG 145 (352)
T ss_pred CceEEEeCCCCcccCeeEEEEEEeCC
Confidence 34578999999999999999988653
No 420
>KOG1026|consensus
Probab=36.71 E-value=1.2e+02 Score=26.43 Aligned_cols=20 Identities=10% Similarity=0.115 Sum_probs=17.8
Q ss_pred eeEeeeCCCCCceEEEEeeC
Q psy13371 2 LHQRKLKGLLPTRVSWIRHR 21 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~ 21 (212)
.+.|...+.|.|.+.|+..+
T Consensus 211 ~~~c~~~~~~vp~~~~~~~~ 230 (774)
T KOG1026|consen 211 TLKCSQAGIPVPCHYWFPNC 230 (774)
T ss_pred eeeeecccCCCcceeeeccc
Confidence 57899999999999999766
No 421
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=34.45 E-value=40 Score=14.52 Aligned_cols=8 Identities=0% Similarity=0.115 Sum_probs=3.0
Q ss_pred HHHhhhhc
Q psy13371 204 NLFLKTAY 211 (212)
Q Consensus 204 ~l~~~~~~ 211 (212)
++++...|
T Consensus 16 LiIvG~s~ 23 (24)
T PF09680_consen 16 LIIVGASC 23 (24)
T ss_pred HHHhccee
Confidence 33333333
No 422
>KOG0200|consensus
Probab=33.62 E-value=2.6e+02 Score=23.68 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=19.8
Q ss_pred eEEEEEcccCCCCCEEEEEEecC
Q psy13371 49 EWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 49 ~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
...+.+..+...|.|.|+|.+.+
T Consensus 12 ~~~~~~~~~~~~~~~~y~~~~~~ 34 (609)
T KOG0200|consen 12 HWFLIIDSVVPGDKGFYTCLVSN 34 (609)
T ss_pred cceEEEEEEEecCCccEEEEEec
Confidence 34677888899999999999998
No 423
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=30.86 E-value=1e+02 Score=17.26 Aligned_cols=54 Identities=22% Similarity=0.454 Sum_probs=31.2
Q ss_pred EEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCCeeEEEEEE
Q psy13371 105 NLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHV 181 (212)
Q Consensus 105 ~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~v 181 (212)
+|.|..... -+ +.|+-++..+-. .+. .++.+.+ -.+.|+|.-+.....++-+.-
T Consensus 2 tltC~s~~s--LP--iswYcN~TRLlR---------lt~------~Tlt~~~----ltcNFtCV~qSGh~hSiWItW 55 (71)
T PF11049_consen 2 TLTCPSNAS--LP--ISWYCNGTRLLR---------LTQ------QTLTVVT----LTCNFTCVGQSGHRHSIWITW 55 (71)
T ss_pred ceecCCCCC--Cc--ccEEECCceeee---------ecC------CeEeeee----eeEEeeecCCCCCCceEEEEE
Confidence 467876433 23 799999876521 011 1144332 257899988776666665544
No 424
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=30.56 E-value=28 Score=17.88 Aligned_cols=13 Identities=8% Similarity=0.230 Sum_probs=7.5
Q ss_pred HHHHHHHhhhhcC
Q psy13371 200 LTFTNLFLKTAYL 212 (212)
Q Consensus 200 ~~~~~l~~~~~~~ 212 (212)
++.++++++++|+
T Consensus 7 wivli~lv~~gy~ 19 (54)
T PF13260_consen 7 WIVLIVLVVVGYF 19 (54)
T ss_pred HHHHHHHHHHHHH
Confidence 4555666666663
No 425
>PHA03286 envelope glycoprotein E; Provisional
Probab=29.00 E-value=1.1e+02 Score=24.51 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=19.6
Q ss_pred EEEEcccCCCCCEEEEEEecCC
Q psy13371 51 TLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 51 ~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+|++.|+..+++|.|.|.+.-.
T Consensus 308 nL~f~nA~~s~SGLYVfVl~yN 329 (492)
T PHA03286 308 SFRLANAQPTDAGLYVVVALYN 329 (492)
T ss_pred ceeecCCCcccCceEEEEEEEC
Confidence 5889999999999999998754
No 426
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=27.58 E-value=1.4e+02 Score=17.54 Aligned_cols=56 Identities=14% Similarity=0.224 Sum_probs=31.1
Q ss_pred cEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCCeeEEE
Q psy13371 103 TINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVY 178 (212)
Q Consensus 103 ~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~ 178 (212)
...|.+.+.+. .+. +.|+.++..+....... .+.+ .....|.|+-.+....+....
T Consensus 31 ~~~l~l~a~~~-~~~--~~W~vdg~~~g~~~~~~--------------~~~~---~~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGP--VYWFVDGEPLGTTQPGH--------------QLFW---QPDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCc--EEEEECCEEcccCCCCC--------------eEEe---CCCCCeeEEEEEEcCCCCEEE
Confidence 45566666555 344 99999999873222111 1222 224567777777655444443
No 427
>PHA03291 envelope glycoprotein I; Provisional
Probab=27.55 E-value=1.2e+02 Score=23.55 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=22.1
Q ss_pred CeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 48 DEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 48 ~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
....|.|.+...+|+|.|.-++.-.+
T Consensus 127 ~~vLL~i~~P~~~DsGiYvLRV~vdg 152 (401)
T PHA03291 127 RQPLLRARGAARAVVGLYVLRVWVEG 152 (401)
T ss_pred cceEEEecCCCcccceeEEEEEEeCC
Confidence 45578999999999999999988653
No 428
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=26.79 E-value=1.2e+02 Score=16.79 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=10.6
Q ss_pred eeeCCCCCceEEEEe
Q psy13371 5 RKLKGLLPTRVSWIR 19 (212)
Q Consensus 5 C~~~~~p~~~v~W~~ 19 (212)
+...|.+...|.|++
T Consensus 8 ~TL~Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 8 VTLVGPPDGPVTWYK 22 (63)
T ss_pred EEEeCCCCCceEEEE
Confidence 345566777899984
No 429
>PF11327 DUF3129: Protein of unknown function (DUF3129); InterPro: IPR021476 This eukaryotic family of proteins has no known function.
Probab=24.22 E-value=2.2e+02 Score=19.85 Aligned_cols=27 Identities=19% Similarity=0.482 Sum_probs=21.8
Q ss_pred CCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 46 EGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 46 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
..+...++++.+..+-+|-|+|.+...
T Consensus 89 ~gG~i~mt~hQVN~DGaGP~~C~iD~t 115 (184)
T PF11327_consen 89 AGGSISMTIHQVNADGAGPFTCDIDET 115 (184)
T ss_pred CCCEEEEEEEEecCCCCcCeEEEECCC
Confidence 345567788889988899999999865
No 430
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=23.52 E-value=1.6e+02 Score=23.80 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=17.5
Q ss_pred eEEEEEcccCCCCCEEEEEEecCC
Q psy13371 49 EWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 49 ~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
.-.|++.|+..+++|.|.|.+.-.
T Consensus 268 ~~~l~f~~a~~~~sGLYv~V~~~n 291 (439)
T PF02480_consen 268 GVDLQFTNAPESASGLYVFVVYYN 291 (439)
T ss_dssp SSSEEESS--GGG-EEEEEEEEET
T ss_pred CcceEecCCCcccCceEEEEEEEC
Confidence 346899999999999999998754
No 431
>PHA03281 envelope glycoprotein E; Provisional
Probab=21.71 E-value=4.9e+02 Score=21.86 Aligned_cols=77 Identities=14% Similarity=0.136 Sum_probs=45.8
Q ss_pred eEEEEEcccCCCCCEEEEEEecCC-C-ceeEEEEEEEeccc-----ceeeCCC------------ceeeeCCCcEEEEeE
Q psy13371 49 EWTLHIKWAQKRDAGVYECQLSTQ-P-VRSFFVNLNVVVPT-----AEILGSP------------DLHVDEGSTINLTCS 109 (212)
Q Consensus 49 ~~~L~i~~~~~~d~G~Y~C~~~~~-~-~~~~~~~l~v~~~~-----~~~~~~~------------~~~~~~g~~~~l~C~ 109 (212)
...|+|.+++..++|.|+--.... + .....+.|+|...+ .....|+ +..-.+|+++.+.-.
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~ 376 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMH 376 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEE
Confidence 347899999999999999776643 2 33335556665422 1111211 234457888877766
Q ss_pred EeeC---CCCCceEEEEEc
Q psy13371 110 IKYS---PEPPAYIFWYHH 125 (212)
Q Consensus 110 ~~~~---~~p~~~v~W~~~ 125 (212)
.... .+-...+.|+.-
T Consensus 377 L~s~ihD~pFsleI~Wyy~ 395 (642)
T PHA03281 377 LQYKIHDAPFDLLLEWLYV 395 (642)
T ss_pred EeeeccCCCceeEEEEEEe
Confidence 6432 122446789864
No 432
>KOG3611|consensus
Probab=21.02 E-value=3.5e+02 Score=23.74 Aligned_cols=21 Identities=24% Similarity=0.591 Sum_probs=18.5
Q ss_pred EEEeeeeecCCEEEEEEcccC
Q psy13371 152 LLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 152 l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+.+..++..|.|.|.|.+...
T Consensus 614 lll~~~q~~~~G~y~c~~~e~ 634 (737)
T KOG3611|consen 614 LVLLSVQKLDGGTYPCYADES 634 (737)
T ss_pred eeEEEEeeccCcccccccccC
Confidence 777788999999999999865
No 433
>PHA03283 envelope glycoprotein E; Provisional
Probab=20.84 E-value=2.2e+02 Score=23.55 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=21.2
Q ss_pred CeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 48 DEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 48 ~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+...|++.++..+++|.|.|.+.-.
T Consensus 313 ~~v~L~f~nap~~~SGLYVfVv~yN 337 (542)
T PHA03283 313 NRVDLLFKNAPASASGLYVFVLLYN 337 (542)
T ss_pred CCcceEeccCCcccCceEEEEEEEC
Confidence 4457899999999999999998754
Done!