RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13371
(212 letters)
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 96.1 bits (239), Expect = 5e-26
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 2/81 (2%)
Query: 6 KLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65
++ T + W L D R + E ++ + D G Y
Sbjct: 29 RVDQNDNTSLQWSN-PAQQTLYFDDKKALRDNRIELVRA-SWHELSISVSDVSLSDEGQY 86
Query: 66 ECQLSTQPVRSFFVNLNVVVP 86
C L T PV++ L V+
Sbjct: 87 TCSLFTMPVKTSKAYLTVLGV 107
Score = 46.4 bits (110), Expect = 3e-07
Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 7/106 (6%)
Query: 82 NVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVS-- 139
V + + ++ V EG T LTC + + + W + + Y + +
Sbjct: 2 KVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTS--LQWSNPAQQTLYFDDKKALRDN 59
Query: 140 -VITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVAS--VYVHVL 182
+ + + + L D G+Y+CS V + Y+ VL
Sbjct: 60 RIELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVL 105
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 97.8 bits (243), Expect = 1e-25
Identities = 32/186 (17%), Positives = 65/186 (34%), Gaps = 13/186 (6%)
Query: 3 HQRKLKGLLPTRVSWIR----HRDIHILTVGSYTYTSDQRFSAIHR--REGDEWTLHIKW 56
+ R++ VSW + + I + + F R + + L +
Sbjct: 14 YWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTA 73
Query: 57 AQKRDAGVYECQLST-QPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPE 115
A G Y C++ + + +L+VV P + S + S + +TC++ P
Sbjct: 74 ANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPH 133
Query: 116 PPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA--D 173
P ++ W + V ++ G + + G + S + +C N +
Sbjct: 134 P--HVQWLMPEGVEPAPTAANGGVMKEKDG--SLSVAVDLSLPKPWHLPVTCVGKNDKEE 189
Query: 174 VASVYV 179
VYV
Sbjct: 190 AHGVYV 195
Score = 43.1 bits (101), Expect = 2e-05
Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 19/102 (18%)
Query: 98 VDEGSTINLTCSIKY-SPEPPAYIFWYH-------------HDEVISYDSSRGGVSVITE 143
G + LT + S P + W+ H +VI + G I
Sbjct: 3 AFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR 62
Query: 144 KGEVTTSYLLIQQAELKDSGKYSCSPSNAD---VASVYVHVL 182
T +L++ A + G Y C + ++ V+
Sbjct: 63 SA--NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVV 102
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 95.6 bits (237), Expect = 2e-25
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Query: 4 QRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAG 63
+ ++K + + W L G D R + E ++ I D G
Sbjct: 59 KCQVKDHEDSSLQWSN-PAQQTLYFGEKRALRDNRIQLVTS-TPHELSISISNVALADEG 116
Query: 64 VYECQLSTQPVRSFFVNLNVVVP 86
Y C + T PVR+ + V+
Sbjct: 117 EYTCSIFTMPVRTAKSLVTVLGI 139
Score = 37.8 bits (87), Expect = 6e-04
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 9/102 (8%)
Query: 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISY-----DSSRGGVSV 140
+ D V G T+ L C + + W + + Y + +
Sbjct: 38 QDDSQPWTSDETVVAGGTVVLKCQ--VKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQL 95
Query: 141 ITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVL 182
+T + I L D G+Y+CS V + V
Sbjct: 96 VTSTP--HELSISISNVALADEGEYTCSIFTMPVRTAKSLVT 135
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 91.1 bits (226), Expect = 3e-22
Identities = 35/181 (19%), Positives = 57/181 (31%), Gaps = 24/181 (13%)
Query: 9 GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
+SW + + QR S + + D TL I A DAG+Y+C
Sbjct: 29 DAKDKDISWFSPNGEKLSP-------NQQRISVVWN-DDDSSTLTIYNANIDDAGIYKCV 80
Query: 69 LSTQP--VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD 126
++ + VN+ + EG + C + S P I W H
Sbjct: 81 VTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPP--TIIWKHKG 138
Query: 127 EVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA-----DVASVYVHV 181
+ V ++ +YL I+ + D G Y C + + V V
Sbjct: 139 RDVI-LKKDVRFIV------LSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 191
Query: 182 L 182
Sbjct: 192 N 192
Score = 73.0 bits (179), Expect = 9e-16
Identities = 33/178 (18%), Positives = 59/178 (33%), Gaps = 28/178 (15%)
Query: 14 RVSWIR-HRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS-- 70
+ W RD+ + + S+ L I+ +K D G Y C+
Sbjct: 131 TIIWKHKGRDVILKKDVRFIVLSNN-------------YLQIRGIKKTDEGTYRCEGRIL 177
Query: 71 -TQPVRSFFVNLNVVVPTAEILGSP--DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE 127
+ + + V VP + + G ++ L C PEP + W E
Sbjct: 178 ARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEP--TMSWTKDGE 235
Query: 128 VISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
I + + ++ S L I+ + D +Y C N AS+++ V
Sbjct: 236 PIENEEEDDEKHIFSDDS----SELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289
Score = 53.3 bits (128), Expect = 8e-09
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 8/91 (8%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD-EVISYDSSRGGVSVITEKGEVTTSYL 152
+ G + C + + I W+ + E +S + R + + +S L
Sbjct: 10 SQGEISVGESKFFLCQVAGDAKDKD-ISWFSPNGEKLSPNQQR----ISVVWNDDDSSTL 64
Query: 153 LIQQAELKDSGKYSCSPSNA--DVASVYVHV 181
I A + D+G Y C + + V+V
Sbjct: 65 TIYNANIDDAGIYKCVVTAEDGTQSEATVNV 95
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 88.5 bits (219), Expect = 3e-22
Identities = 30/183 (16%), Positives = 51/183 (27%), Gaps = 34/183 (18%)
Query: 9 GLLPTRVSWIRHRDIHILTVGSYTYTSDQRF------SAIHRREGDEWTLHIKWAQKRDA 62
+ W I IL T S + + L IK + D+
Sbjct: 21 QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDS 80
Query: 63 GVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFW 122
Y C++ Q + + D H+ +G ++ LT P +
Sbjct: 81 DTYICEVEDQKEEVQLLVFGLTAN-------SDTHLLQGQSLTLTLESPPGSSP--SVQC 131
Query: 123 YHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN---ADVASVYV 179
I L + Q EL+DSG ++C+ + +
Sbjct: 132 -----------RSPRGKNIQGGKT-----LSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 175
Query: 180 HVL 182
VL
Sbjct: 176 VVL 178
Score = 46.5 bits (110), Expect = 9e-07
Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 14/97 (14%)
Query: 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGG-----------VSVITEKGE 146
+G T+ LTC+ W + +++ + +
Sbjct: 7 GKKGDTVELTCTASQKKSIQ--FHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64
Query: 147 VTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
L+I+ +++DS Y C + V + V
Sbjct: 65 QGNFPLIIKNLKIEDSDTYICEVED-QKEEVQLLVFG 100
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 90.6 bits (225), Expect = 2e-21
Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 22/181 (12%)
Query: 6 KLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65
+L+G P +VSW + D L S +++ E ++HI D G Y
Sbjct: 407 ELQGTPPFQVSWHK--DKRELR-------SGKKYK--IMSENFLTSIHILNVDSADIGEY 455
Query: 66 ECQLSTQP-VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYH 124
+C+ S + ++ + P + D+ G + L +I+ + + W+
Sbjct: 456 QCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPI--SVAWFK 513
Query: 125 HDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
I +S I + L +AE ++GKY+C N + V
Sbjct: 514 DKGEIVRESDN-----IWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSV 568
Query: 182 L 182
L
Sbjct: 569 L 569
Score = 79.5 bits (196), Expect = 1e-17
Identities = 40/183 (21%), Positives = 62/183 (33%), Gaps = 26/183 (14%)
Query: 6 KLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65
+ G P +++W + I G+Y T + TL + K DAG Y
Sbjct: 220 HVTGTAPIKITW-AKDNREIRPGGNYKMTLV----------ENTATLTVLKVTKGDAGQY 268
Query: 66 ECQLS-TQPVRSFFVNLNVVVPTAEILGSP--DLHVDEGSTINLTCSIKYSPEPPAYIFW 122
C S S L V P + V + C I P + W
Sbjct: 269 TCYASNVAGKDSCSAQLGVQEP-PRFIKKLEPSRIVKQDEHTRYECKI--GGSPEIKVLW 325
Query: 123 YHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYV 179
Y + I +SS+ +S + L + ++DSG Y+C NA +S +
Sbjct: 326 YKDETEIQ-ESSKFRMSFVESVAV-----LEMYNLSVEDSGDYTCEAHNAAGSASSSTSL 379
Query: 180 HVL 182
V
Sbjct: 380 KVK 382
Score = 74.8 bits (184), Expect = 6e-16
Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 12/143 (8%)
Query: 44 RREGDEWTLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVVVPTAEILGSPDLHVDEGS 102
L + D+G Y C+ S +L V P + +G+
Sbjct: 341 SFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGA 400
Query: 103 TINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDS 162
++L C ++ +P + W+ + I + +T+ + I + D
Sbjct: 401 DVHLECELQGTPPF--QVSWHKDKRELRSGKKY----KIMSENFLTS--IHILNVDSADI 452
Query: 163 GKYSCSPSNA---DVASVYVHVL 182
G+Y C SN D + +
Sbjct: 453 GEYQCKASNDVGSDTCVGSITLK 475
Score = 74.1 bits (182), Expect = 8e-16
Identities = 30/150 (20%), Positives = 49/150 (32%), Gaps = 15/150 (10%)
Query: 43 HRREGDEWTLHIKWAQKRDAGVYECQLSTQP---VRSFFVNLNVVVPTAEILGSP-DLHV 98
+ + + +L I D G Y C+ S + + D+H
Sbjct: 54 MQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHE 113
Query: 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAE 158
G + C I S + WY E++ D + S I L I Q +
Sbjct: 114 TLGFPVAFECRINGSEPLQ--VSWYKDGELLK-DDANLQTSFIHNVAT-----LQILQTD 165
Query: 159 LKDSGKYSCSPSNA---DVASVYVHVLNGE 185
G+Y+CS SN +S + + E
Sbjct: 166 QSHVGQYNCSASNPLGTASSSAKLTLSEHE 195
Score = 71.8 bits (176), Expect = 6e-15
Identities = 27/145 (18%), Positives = 46/145 (31%), Gaps = 15/145 (10%)
Query: 44 RREGDEWTLHIKWAQKRDAGVYECQLS---TQPVRSFFVNLNVVVPTAEILGSP-DLHVD 99
+ TL I + G Y C S S + L+ P + +
Sbjct: 151 SFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLA 210
Query: 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159
G + C + + I W + I G + + T+ L + +
Sbjct: 211 LGESGTFKCHVTGTAPIK--ITWAKDNREI---RPGGNYKMTLVEN---TATLTVLKVTK 262
Query: 160 KDSGKYSCSPSNA---DVASVYVHV 181
D+G+Y+C SN D S + V
Sbjct: 263 GDAGQYTCYASNVAGKDSCSAQLGV 287
Score = 48.6 bits (116), Expect = 4e-07
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 11/91 (12%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153
+ G I L C + +PE I WY + + + + + L+
Sbjct: 13 EHVEAAIGEPITLQCKVDGTPEIR--IAWYKEHTKLRSAPA------YKMQFKNNVASLV 64
Query: 154 IQQAELKDSGKYSCSPSNA---DVASVYVHV 181
I + + D G+Y+C N+ +S + +
Sbjct: 65 INKVDHSDVGEYTCKAENSVGAVASSAVLVI 95
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 85.0 bits (210), Expect = 1e-20
Identities = 35/176 (19%), Positives = 59/176 (33%), Gaps = 12/176 (6%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS--- 70
RV W + Y S R + ++D G Y C +S
Sbjct: 32 RVEWKFVQGSTT---ALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEG 88
Query: 71 TQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVIS 130
Q ++L V+VP ++ S V G+ LTCS PP+ W+ +
Sbjct: 89 GQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEH-DGSPPSEYSWFKDGISML 147
Query: 131 YDSSRGGVSVITEKGEVT--TSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
++ + + + + L+ DSG+Y C N + S H+
Sbjct: 148 TADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 203
Score = 47.3 bits (112), Expect = 6e-07
Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 9/97 (9%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVISYDSSRGGVSVITEKGEVTTS 150
D+ V E +I LTC+ P + W + + ++ ++S
Sbjct: 8 QSDVQVPENESIKLTCTYSGFSSP--RVEWKFVQGSTTALVCYNSQITAPYADRVTFSSS 65
Query: 151 YLLIQQAELKDSGKYSCSPSNA-----DVASVYVHVL 182
+ KD+G+Y+C S S+++ VL
Sbjct: 66 GITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL 102
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 82.4 bits (203), Expect = 1e-20
Identities = 13/90 (14%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 6 KLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65
+ + W+ + + Y + ++ +H ++ ++ + +D GVY
Sbjct: 24 VTSLRKNSSLQWLTPSG-FTIFLNEYPVLKNSKYQLLHH-SANQLSITVPNVTLQDEGVY 81
Query: 66 ECQLSTQPVRSFFVNLNVVV-PTAEILGSP 94
+C + V + V + V+ E P
Sbjct: 82 KCLHYSDSVSTKEVKVIVLATMKGEFCRYP 111
Score = 44.6 bits (105), Expect = 2e-06
Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 7/95 (7%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVS---VITEKGEVTT 149
+ + V+EG T+ L C + W + + +
Sbjct: 8 TETITVEEGQTLTLKCVTSLRKNSS--LQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQ 65
Query: 150 SYLLIQQAELKDSGKYSCSPSNADV--ASVYVHVL 182
+ + L+D G Y C + V V V VL
Sbjct: 66 LSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVL 100
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 86.8 bits (215), Expect = 2e-20
Identities = 35/172 (20%), Positives = 64/172 (37%), Gaps = 14/172 (8%)
Query: 15 VSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP- 73
++W R D T G + H +LHIK + D+G Y+C+ +++
Sbjct: 32 ITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS----SLHIKDVKLSDSGRYDCEAASRIG 87
Query: 74 VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDS 133
+ L++ I + EG+ IN++C +K PPA I W V+ +
Sbjct: 88 GHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKS--NPPASIHWRRDKLVLPAKN 145
Query: 134 SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ + L I D G+Y+C+ +N + +
Sbjct: 146 TTN----LKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALA 193
Score = 54.8 bits (132), Expect = 3e-09
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSV-ITEKGEV 147
I+ + E + L C + P P I W + ++ + I KG+
Sbjct: 3 HIIQLKNETTYENGQVTLVCDAEGEPIP--EITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 148 TTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+S L I+ +L DSG+Y C ++ S+Y+ +
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 98
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 84.2 bits (207), Expect = 5e-20
Identities = 39/212 (18%), Positives = 71/212 (33%), Gaps = 37/212 (17%)
Query: 9 GLLPTRVSWIRHRDIHILTVGSYTYTSDQ---------RFSAIHRREGDEWTLHIKWAQK 59
RV W+ +D + Y S+ R + ++ +L ++ QK
Sbjct: 34 EKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQK 93
Query: 60 RDAGVYECQLSTQP-VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPA 118
D G+Y C++ + + + V E DL V G T + CSI+ + E
Sbjct: 94 ADEGIYTCEIRLKNESMVMKKPVELWVLPEE---PRDLRVRVGDTTQMRCSIQSTEEKRV 150
Query: 119 Y----------------IFWYHHDEVISYDSS----RGGVSVITEKGEVTTSYLLIQQAE 158
+ Y + S R V + + S + +Q +
Sbjct: 151 TKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGS-IKLQTVK 209
Query: 159 LKDSGKYSCSPSNA---DVASVYVHVLNGEYT 187
D G Y+CS ++ +HV+ E+
Sbjct: 210 ESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQ 241
Score = 41.0 bits (95), Expect = 1e-04
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 18/108 (16%)
Query: 93 SPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYH------HDEVISYDSSRGGVSVITEKG 145
SP L V G ++ + C ++ + + + W E + + S V +
Sbjct: 12 SPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQN 71
Query: 146 EVTTSY--------LLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
LL+Q + D G Y+C V V +
Sbjct: 72 RSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW 119
Score = 40.2 bits (93), Expect = 2e-04
Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 14/112 (12%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQ-------------RFSAIHRREGDEWTLHIKWAQ 58
T+V+W+ H +Y S+ R ++ ++ ++ +
Sbjct: 150 VTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVK 209
Query: 59 KRDAGVYECQLSTQPVRSF-FVNLNVVVPTAEILGSPDLHVDEGSTINLTCS 109
+ D G+Y C + + S + L+VV + SP D+G L +
Sbjct: 210 ESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISPTPPTDKGQQGILNGN 261
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 82.7 bits (204), Expect = 7e-20
Identities = 40/175 (22%), Positives = 60/175 (34%), Gaps = 11/175 (6%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS--- 70
RV W T Y + S R + K + D G Y C +S
Sbjct: 35 RVEWKF---DQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEG 91
Query: 71 TQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVIS 130
V L V+VP ++ + G+ LTCS + PP+ W+ V+
Sbjct: 92 GNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQ-DGSPPSEYTWFKDGIVMP 150
Query: 131 YDS-SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ S S + TT L+ D+G+YSC N + S V +
Sbjct: 151 TNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205
Score = 50.3 bits (120), Expect = 5e-08
Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 9/97 (9%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG--EVTTS 150
P++ + E + + L+C+ P + W + + + +
Sbjct: 11 EPEVRIPENNPVKLSCAYSGFSSP--RVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPT 68
Query: 151 YLLIQQAELKDSGKYSCSPSNA-----DVASVYVHVL 182
+ + +D+G Y+C S V + VL
Sbjct: 69 GITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL 105
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 81.0 bits (200), Expect = 3e-19
Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 8/144 (5%)
Query: 43 HRREGDEWTLHIKWAQKRDAGVYECQLS-TQPVRSFFVNLNVVVPTAEILGSPDLHVDEG 101
+ +G L ++ D G Y C+ + L V V I+ + E
Sbjct: 51 YILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ-PHIIQLKNETTYEN 109
Query: 102 STINLTCSIKYSPEPPAYIFWYHHDEVISY-DSSRGGVSVITEKGEVTTSYLLIQQAELK 160
+ L C + P P I W + ++ + + I KG+ +S L I+ +L
Sbjct: 110 GQVTLVCDAEGEPIP--EITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 167
Query: 161 DSGKYSCSPSNA---DVASVYVHV 181
DSG+Y C ++ S+Y+ +
Sbjct: 168 DSGRYDCEAASRIGGHQKSMYLDI 191
Score = 51.0 bits (122), Expect = 3e-08
Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 14/102 (13%)
Query: 85 VPTAEILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE 143
+P + + + G + +C SPEP I W+ + ++I +
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEP--AISWFRNGKLIEENEKY-------- 51
Query: 144 KGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ + + L ++ D G Y C +N D ++ V
Sbjct: 52 ILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 93
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 82.5 bits (203), Expect = 4e-19
Identities = 34/184 (18%), Positives = 60/184 (32%), Gaps = 18/184 (9%)
Query: 13 TRVSWIRHRDIHILTVGSYTY----TSDQRFSAIHRREGDE---WTLHIKWAQKRDAGVY 65
++++W RH + + V T + +R + R G E +L + + D G Y
Sbjct: 35 SQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNY 94
Query: 66 ECQLSTQP--VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWY 123
C T P RS + L V+ + + C PPA I W+
Sbjct: 95 TCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGG-RPPAQITWH 153
Query: 124 HHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA-----DVASVY 178
+ S V TS ++ + D +C + + +V
Sbjct: 154 SDLGGMPNTSQ---VPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVN 210
Query: 179 VHVL 182
+ V
Sbjct: 211 LTVY 214
Score = 67.4 bits (164), Expect = 1e-13
Identities = 30/177 (16%), Positives = 54/177 (30%), Gaps = 28/177 (15%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ--- 68
P +++W H D+ + S + + + + D C+
Sbjct: 147 PAQITW--HSDLGGMPNTSQVPGFLSGTVTVTS------LWILVPSSQVDGKNVTCKVEH 198
Query: 69 LSTQPVRSFFVNLNVVVP-TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE 127
S + + VNL V P I G + + LTC + +P P W
Sbjct: 199 ESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNP-EPTGYNWSTTMG 257
Query: 128 VISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ + LLI+ + + C+ +NA A + V V
Sbjct: 258 PL------------PPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 49.3 bits (117), Expect = 2e-07
Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 19/108 (17%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAY---IFWYHHDEVISY------------DSSRGGV 138
+ G ++ L C ++ + + W H E S +S R
Sbjct: 8 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEF 67
Query: 139 SVITEKGEVTTSYLLIQQAELKDSGKYSCS----PSNADVASVYVHVL 182
E+ + L + ++D G Y+C P + +++ VL
Sbjct: 68 VAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL 115
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 82.1 bits (203), Expect = 5e-19
Identities = 36/177 (20%), Positives = 56/177 (31%), Gaps = 25/177 (14%)
Query: 15 VSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ-LSTQP 73
V W R G ++ I +G L I DA VY+ + +
Sbjct: 36 VKWYRQ--------GKEIIADGLKYR-IQEFKGGYHQLIIASVTDDDATVYQVRATNQGG 86
Query: 74 VRSFFVNLNVVVPT-----AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEV 128
S +L V VP + G +H G +++ P+P I W ++
Sbjct: 87 SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP--VITWQKGQDL 144
Query: 129 ISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
I + TS + E KD+G Y N D +V + V
Sbjct: 145 IDNNGHY-----QVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196
Score = 53.6 bits (129), Expect = 7e-09
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+L+V S L C + P+P + WY + I D + + KG L+I
Sbjct: 13 NLNVRYQSNATLVCKVTGHPKPI--VKWYRQGKEIIADGLK--YRIQEFKGGYHQ--LII 66
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHV 181
D+ Y +N + + V
Sbjct: 67 ASVTDDDATVYQVRATNQGGSVSGTASLEV 96
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 79.9 bits (197), Expect = 5e-19
Identities = 29/144 (20%), Positives = 47/144 (32%), Gaps = 11/144 (7%)
Query: 44 RREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSP-DLHVDEGS 102
R+ I + D+G Y C + V +I G + +EG
Sbjct: 50 RKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAA-PDITGHKRSENKNEGQ 108
Query: 103 TINLTCSIKYSPEPPAYIFWYH-HDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELK- 160
+ C P P W + V S+ G I K + L I ++
Sbjct: 109 DAMMYCKSVGYPHPE--WMWRKKENGVFEEISNSSGRFFIINKE--NYTELNIVNLQITE 164
Query: 161 DSGKYSCSPSNA---DVASVYVHV 181
D G+Y C+ +N+ S + V
Sbjct: 165 DPGEYECNATNSIGSASVSTVLRV 188
Score = 52.9 bits (127), Expect = 5e-09
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 14/96 (14%)
Query: 90 ILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT 148
I+ S + D + L C++ S Y +W + ++
Sbjct: 6 IVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNME-------- 57
Query: 149 TSYLLIQQAELKDSGKYSCSPSNA--DVASVYVHVL 182
I + +DSG+Y C A+ + V
Sbjct: 58 ---YRINKPRAEDSGEYHCVYHFVSAPKANATIEVK 90
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 80.9 bits (200), Expect = 1e-18
Identities = 22/142 (15%), Positives = 47/142 (33%), Gaps = 12/142 (8%)
Query: 44 RREGDEWTLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVVVPTAEILGSPDLHVDEGS 102
L + D+G Y C+ S +L V P + +G+
Sbjct: 149 SFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGA 208
Query: 103 TINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDS 162
++L C ++ +P + W+ + + +++E + + I + D
Sbjct: 209 DVHLECELQGTPPF--QVSWHKDKRELR-SGKK--YKIMSENFLTS---IHILNVDSADI 260
Query: 163 GKYSCSPSNA---DVASVYVHV 181
G+Y C SN + +
Sbjct: 261 GEYQCKASNDVGSYTCVGSITL 282
Score = 75.9 bits (187), Expect = 9e-17
Identities = 43/182 (23%), Positives = 65/182 (35%), Gaps = 24/182 (13%)
Query: 6 KLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65
+ G P +++W + I G+Y T + + TL + K DAG Y
Sbjct: 28 HVTGTAPIKITW-AKDNREIRPGGNYKMTLVENTA----------TLTVLKVTKGDAGQY 76
Query: 66 ECQLS-TQPVRSFFVNLNVVVPTAEILGSPDLH-VDEGSTINLTCSIKYSPEPPAYIFWY 123
C S S L V P I V + C I SPE + WY
Sbjct: 77 TCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEI--KVLWY 134
Query: 124 HHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVH 180
+ I +SS+ +S + L + ++DSG Y+C NA +S +
Sbjct: 135 KDETEIQ-ESSKFRMSFVESVAV-----LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK 188
Query: 181 VL 182
V
Sbjct: 189 VK 190
Score = 51.3 bits (123), Expect = 3e-08
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 11/91 (12%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+ + G + C + + I W + I + +T T L +
Sbjct: 14 SVDLALGESGTFKCHVTGTAPI--KITWAKDNREIRPGGNY----KMTLVENTAT--LTV 65
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ D+G+Y+C SN D S + V
Sbjct: 66 LKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 96
Score = 33.6 bits (77), Expect = 0.033
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72
S +++ + E ++HI D G Y+C+ S
Sbjct: 234 RSGKKYKIMS--ENFLTSIHILNVDSADIGEYQCKASND 270
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 78.3 bits (193), Expect = 2e-18
Identities = 32/154 (20%), Positives = 49/154 (31%), Gaps = 24/154 (15%)
Query: 35 SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS--TQPVRSFFVNLNVVVPTAEILG 92
+ + + L +K ++ DAG Y CQ+ + S V L V
Sbjct: 45 NLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGV-PFFTV 103
Query: 93 SP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY 151
P DL V + L+C PEP I W+ I + V
Sbjct: 104 EPKDLAVPPNAPFQLSCEAVGPPEP-VTIVWWRGTTKIGGPAPSPSV------------- 149
Query: 152 LLIQQAELKDSGKYSCSPSN----ADVASVYVHV 181
+ + S +SC N A + VH+
Sbjct: 150 --LNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 181
Score = 54.0 bits (130), Expect = 2e-09
Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 13/101 (12%)
Query: 89 EILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147
+++G+P L V +G + L CS++ EP I W V+ I +
Sbjct: 4 KLMGAPVKLTVSQGQPVKLNCSVEGMEEP--DIQWVKDGAVVQNLDQLY----IPVSEQH 57
Query: 148 TTSYLLIQQAELKDSGKYSCSPSNA------DVASVYVHVL 182
+L ++ E D+G+Y C + + V +
Sbjct: 58 WIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGV 98
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 80.4 bits (198), Expect = 2e-18
Identities = 31/181 (17%), Positives = 54/181 (29%), Gaps = 27/181 (14%)
Query: 11 LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC--Q 68
L VS +R +L Y ++ + I+ A+ D+ Y C
Sbjct: 118 LKDSVSLMREGGRQVLRKTVYFFSPWR-------------GFIIRKAKVLDSNTYVCKTM 164
Query: 69 LSTQPVRSFFVNLNVVVPTAEI----LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYH 124
++ + S + L V E L L G + CS + +
Sbjct: 165 VNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVG--FNVILK 222
Query: 125 HDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ K L + + +D+G YSC SN A++ V
Sbjct: 223 RGDTKLEIPLNSDFQDNYYKK---VRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279
Query: 182 L 182
+
Sbjct: 280 V 280
Score = 65.4 bits (159), Expect = 5e-13
Identities = 29/159 (18%), Positives = 47/159 (29%), Gaps = 15/159 (9%)
Query: 29 GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVVVPT 87
GS + E TL + A ++ G Y C P S ++L V P
Sbjct: 30 GSVEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPA 89
Query: 88 AEILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE 146
++ V EG L C I P + + S
Sbjct: 90 HSWNLLAQEVTVVEGQEAVLPCLIT-DPALKDSVSLMREGGRQVLRKTVYFFS------- 141
Query: 147 VTTSYLLIQQAELKDSGKYSCSPSNADV----ASVYVHV 181
+I++A++ DS Y C +++ V
Sbjct: 142 -PWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKV 179
Score = 46.9 bits (111), Expect = 1e-06
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 20/91 (21%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153
P+L V+ G T+ L C S + W T E S L
Sbjct: 12 PELVVEPGETVTLRCVSNGS------VEWD-----------GPISPYWTLDPESPGSTLT 54
Query: 154 IQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ A K++G Y C+ +++++V
Sbjct: 55 TRNATFKNTGTYRCTELEDPMAGSTTIHLYV 85
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 78.6 bits (194), Expect = 2e-18
Identities = 31/155 (20%), Positives = 59/155 (38%), Gaps = 15/155 (9%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVVVPTA--EI 90
++ L I K ++G Y + + + L V TA
Sbjct: 47 STSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNF 106
Query: 91 LGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTT 149
+ + V +GS + L + P P + +Y I S I+++G++ +
Sbjct: 107 VQRLQSMTVRQGSQVRLQVRVTGIPTP--VVKFYRDGAEIQ-SSLD---FQISQEGDLYS 160
Query: 150 SYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
LLI +A +DSG YS + +N+ ++ + V
Sbjct: 161 --LLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 55.9 bits (135), Expect = 5e-10
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+ V EGST I P P + W+ +VIS S+ GV + G L I
Sbjct: 14 SVVVLEGSTATFEAHISGFPVP--EVSWFRDGQVIS-TSTLPGVQISFSDGRAK---LTI 67
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHV 181
+SG+YS +N ++ + V
Sbjct: 68 PAVTKANSGRYSLKATNGSGQATSTAELLV 97
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 78.4 bits (193), Expect = 2e-18
Identities = 38/178 (21%), Positives = 54/178 (30%), Gaps = 24/178 (13%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS- 70
P V W RD IL + T T L I Q D G Y+C +
Sbjct: 32 PPEVHW--LRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFL 89
Query: 71 -TQPVRSFFVNLNVVVPTAEILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEV 128
Q S + + L P D V + NL+C + PE P + W
Sbjct: 90 GHQTFVSQPGYVGLEGL-PYFLEEPEDRTVAANTPFNLSCQAQGPPE-PVDLLWL----- 142
Query: 129 ISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN----ADVASVYVHVL 182
+ V + T G L + + +SC N + + VL
Sbjct: 143 ------QDAVPLATAPGHGPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITVL 192
Score = 53.4 bits (128), Expect = 3e-09
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 10/97 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT---TSY 151
++ G T L C ++ EPP + W +++ S + E + S
Sbjct: 11 NITGARGLTGTLRCQLQVQGEPPE-VHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQ 69
Query: 152 LLIQQAELKDSGKYSCSPSN------ADVASVYVHVL 182
L I +L D+G+Y C + V + L
Sbjct: 70 LRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGL 106
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 78.7 bits (193), Expect = 2e-18
Identities = 27/180 (15%), Positives = 53/180 (29%), Gaps = 21/180 (11%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ--L 69
VS + D + I AG+ C+ +
Sbjct: 37 NLNVSLCARYPEKRFVPDGNRISWD-----------SKKGFTIPSYMISYAGMVFCEAKI 85
Query: 70 STQPVRSFFVNLNVV---VPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD 126
+ + +S + VV + + S + + G + L C+ + W +
Sbjct: 86 NDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPS 145
Query: 127 EVISYDS--SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ +R + + + S L I D G Y+C+ S+ S +V V
Sbjct: 146 SKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 205
Score = 33.2 bits (75), Expect = 0.035
Identities = 11/88 (12%), Positives = 29/88 (32%), Gaps = 9/88 (10%)
Query: 84 VVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE 143
+ ++ G + ++ T+ + C + + ++ D +R +S ++
Sbjct: 7 IASVSDQHGVVYITENKNKTVVIPCLGS-ISNLNVSLCARYPEKRFVPDGNR--ISWDSK 63
Query: 144 KGEVTTSYLLIQQAELKDSGKYSCSPSN 171
KG I + +G C
Sbjct: 64 KG------FTIPSYMISYAGMVFCEAKI 85
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 77.9 bits (192), Expect = 3e-18
Identities = 35/175 (20%), Positives = 58/175 (33%), Gaps = 24/175 (13%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73
+SW + L+ + QR S + + D TL I A DAG+Y+C ++ +
Sbjct: 34 DISWFS-PNGEKLS------PNQQRIS-VVWNDDDSSTLTIYNANIDDAGIYKCVVTAED 85
Query: 74 --VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISY 131
VN+ + EG + C + S P I W H +
Sbjct: 86 GTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPP--TIIWKHKGRDV-- 141
Query: 132 DSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA-----DVASVYVHV 181
+ ++ YL I+ + D G Y C + + V V
Sbjct: 142 ILKKDVRFIVLSNN-----YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 191
Score = 52.5 bits (126), Expect = 8e-09
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 10/93 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD-EVISYDSSRGGVSVITEKGEVTTSYLL 153
+ G + C + + I W+ + E +S + R +SV+ + +T L
Sbjct: 11 QGEISVGESKFFLCQVAGDAKDK-DISWFSPNGEKLSPNQQR--ISVVWNDDDSST--LT 65
Query: 154 IQQAELKDSGKYSCSPSNA----DVASVYVHVL 182
I A + D+G Y C + A+V V +
Sbjct: 66 IYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF 98
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 78.6 bits (193), Expect = 3e-18
Identities = 34/193 (17%), Positives = 68/193 (35%), Gaps = 28/193 (14%)
Query: 8 KGLLPTRVSWIRHRDIHILTVGSYTYTSDQR--------------FSAIHRREGDEWTLH 53
+ P + W+ + + S + F++ + GD +++
Sbjct: 29 EDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGD-ASIN 87
Query: 54 IKWAQKRDAGVYECQLSTQP-VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKY 112
+ Q D G Y+C++ P V + L V+V + D + G+ L C K
Sbjct: 88 VTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKE 147
Query: 113 SPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172
P W + + + E+T+ + ++ A + SG YSC+ N
Sbjct: 148 GS-LPLQFEWQKLSDSQTMPTPW--------LAEMTSPVISVKNASSEYSGTYSCTVQNR 198
Query: 173 ---DVASVYVHVL 182
D + + V+
Sbjct: 199 VGSDQCMLRLDVV 211
Score = 43.1 bits (101), Expect = 2e-05
Identities = 25/125 (20%), Positives = 37/125 (29%), Gaps = 29/125 (23%)
Query: 81 LNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEP--PAYIFWYHHDE--------VIS 130
L++ P I +G T L C SPE P I W +I
Sbjct: 1 LSITTPEQRI------EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIIL 54
Query: 131 YDS----------SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASV 177
Y +G V + + + + + +L D G Y C A
Sbjct: 55 YSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKF 114
Query: 178 YVHVL 182
+ VL
Sbjct: 115 LLTVL 119
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 78.3 bits (193), Expect = 4e-18
Identities = 38/160 (23%), Positives = 62/160 (38%), Gaps = 18/160 (11%)
Query: 35 SDQRFSAIHRREGDEWTLHIKWAQ-KRDAGVYECQ-LSTQPVRSFFVNLNVVVPTAEILG 92
S+QRF I +G L I+ + RD +YEC + S L V+ G
Sbjct: 48 SNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRG 107
Query: 93 SP-------DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145
P V+ T + C+ +P+P I W+ + ++ G + + +
Sbjct: 108 FPTIDMGPQLKVVERTRTATMLCAASGNPDP--EITWFKDFLPVDTSNNNGRIKQLRSES 165
Query: 146 EVTTSYLLIQQAELKDSGKYSCSPSN----ADVASVYVHV 181
L I+Q+E D GKY C +N A ++V
Sbjct: 166 IGA---LQIEQSEESDQGKYECVATNSAGTRYSAPANLYV 202
Score = 46.0 bits (109), Expect = 2e-06
Identities = 21/92 (22%), Positives = 28/92 (30%), Gaps = 11/92 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D G + C P P I W + +S + E + + S L I
Sbjct: 15 DQTGVSGGVASFICQATGDPRP--KIVWNKKGKKVSNQRFE-----VIEFDDGSGSVLRI 67
Query: 155 QQAELK-DSGKYSCSPSNA---DVASVYVHVL 182
Q D Y C SN S + VL
Sbjct: 68 QPLRTPRDEAIYECVASNNVGEISVSTRLTVL 99
Score = 34.4 bits (79), Expect = 0.014
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67
TS+ R L I+ +++ D G YEC
Sbjct: 151 TSNNNGRIKQLRSESIGALQIEQSEESDQGKYEC 184
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 78.0 bits (192), Expect = 5e-18
Identities = 31/163 (19%), Positives = 52/163 (31%), Gaps = 17/163 (10%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS-TQPVRSFFVNLNVVVPTAE--- 89
+ R R W+L ++ D G Y C + + +L+VV +
Sbjct: 61 KQEHRIGGYKVRNQH-WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPI 119
Query: 90 -ILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147
G P + G + C + +P +I W H E G+ +
Sbjct: 120 LQAGLPANASTVVGGDVEFVCKVYSDAQP--HIQWIKHVEKNGSKYGPDGLPYLKVLKHS 177
Query: 148 T-----TSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
L + D+G+Y C SN S ++ VL
Sbjct: 178 GINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVL 220
Score = 53.7 bits (129), Expect = 4e-09
Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 10/91 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
V +T+ C +P P + W + + + GG V + L++
Sbjct: 28 LHAVPAANTVKFRCPAGGNPMP--TMRWLKNGKEFKQEHRIGGYKVRNQHWS-----LIM 80
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ D G Y+C N + ++ V+
Sbjct: 81 ESVVPSDKGNYTCVVENEYGSINHTYHLDVV 111
Score = 37.2 bits (86), Expect = 0.002
Identities = 11/63 (17%), Positives = 21/63 (33%)
Query: 6 KLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65
K+ + WI+H + + G + + L + + DAG Y
Sbjct: 141 KVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEY 200
Query: 66 ECQ 68
C+
Sbjct: 201 ICK 203
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 78.9 bits (194), Expect = 6e-18
Identities = 30/183 (16%), Positives = 57/183 (31%), Gaps = 27/183 (14%)
Query: 9 GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
+L VS +R R ++ +Y+++ I A+ + Y+C
Sbjct: 116 PVLEAGVSLVRVRGRPLMRHTNYSFSPWH-------------GFTIHRAKFIQSQDYQCS 162
Query: 69 --LSTQPVRSFFVNLNVVVPTAE----ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFW 122
+ + V S + L V L +L G + CS +
Sbjct: 163 ALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNF--DVF 220
Query: 123 YHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYV 179
H+ + + L + Q + + +G YSC SN S++
Sbjct: 221 LQHNNTKLAIPQQSDFHNNRYQ---KVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFF 277
Query: 180 HVL 182
V+
Sbjct: 278 RVV 280
Score = 68.1 bits (166), Expect = 7e-14
Identities = 27/145 (18%), Positives = 41/145 (28%), Gaps = 15/145 (10%)
Query: 44 RREGDEWTLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVVVPTAEILGSP-DLHVDEG 101
+G L A ++ G Y C P S ++L V P ++ V E
Sbjct: 45 YSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFED 104
Query: 102 STINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKD 161
L C + P A + + S G I +A+
Sbjct: 105 QDALLPCLLT-DPVLEAGVSLVRVRGRPLMRHTN--YSFSPWHG------FTIHRAKFIQ 155
Query: 162 SGKYSCSPSNADV----ASVYVHVL 182
S Y CS S+ + V
Sbjct: 156 SQDYQCSALMGGRKVMSISIRLKVQ 180
Score = 44.2 bits (104), Expect = 1e-05
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 20/92 (21%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152
P+L V G+T+ L C S + W T + ++S L
Sbjct: 11 VPELVVKPGATVTLRCVGNGS------VEWDGPPSPH-----------WTLYSDGSSSIL 53
Query: 153 LIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
A +++G Y C+ A+++++V
Sbjct: 54 STNNATFQNTGTYRCTEPGDPLGGSAAIHLYV 85
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 77.1 bits (190), Expect = 7e-18
Identities = 33/163 (20%), Positives = 52/163 (31%), Gaps = 28/163 (17%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC-------QLSTQPVRSFFVNLNVVVP 86
+D I +G L I DA VY+ +S +L V VP
Sbjct: 46 IADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGT------ASLEVEVP 99
Query: 87 TA----EILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVI 141
+ L +H G +++ P+P I W ++I ++
Sbjct: 100 AKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP--VITWQKGQDLID-NNGH----YQ 152
Query: 142 TEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
TS + E KD+G Y N D +V + V
Sbjct: 153 VIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
Score = 52.0 bits (125), Expect = 1e-08
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 9/91 (9%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+L+V S L C + P+P + WY + I D + + KG L+I
Sbjct: 13 NLNVRYQSNATLVCKVTGHPKP--IVKWYRQGKEIIADGLK--YRIQEFKGGYHQ--LII 66
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVL 182
D+ Y +N + + V
Sbjct: 67 ASVTDDDATVYQVRATNQGGSVSGTASLEVE 97
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 76.0 bits (187), Expect = 9e-18
Identities = 30/135 (22%), Positives = 46/135 (34%), Gaps = 21/135 (15%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSI 110
+ A D+G Y CQ + Q S V+L V+ +L +P L EG TI L C
Sbjct: 52 PSYRFKANNNDSGEYTCQ-TGQTSLSDPVHLTVLFE-WLVLQTPHLEFQEGETIMLRCHS 109
Query: 111 KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170
P + ++ + + + I QA SG Y C+ +
Sbjct: 110 WKDK-PLVKVTFFQNGKSQKFSHL--------------DPTFSIPQANHSHSGDYHCTGN 154
Query: 171 NADV----ASVYVHV 181
V + V
Sbjct: 155 IGYTLFSSKPVTITV 169
Score = 54.4 bits (131), Expect = 1e-09
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 19/99 (19%)
Query: 86 PTAEI-LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK 144
P A + L P ++V + ++ LTC SPE + W+H+ +I
Sbjct: 3 PKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQ-WFHNGNLIP-------------- 47
Query: 145 GEVTTSYLLIQQAELKDSGKYSCSPSNADV-ASVYVHVL 182
T +A DSG+Y+C + V++ VL
Sbjct: 48 --THTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVL 84
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 77.6 bits (191), Expect = 1e-17
Identities = 26/134 (19%), Positives = 41/134 (30%), Gaps = 20/134 (14%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSI 110
+ I A D+G Y CQ RS + L + +L EG + L C
Sbjct: 49 SYRITSASVNDSGEYRCQRGLSG-RSDPIQLEIHRGWL-LLQVSSRVFTEGEPLALRCHA 106
Query: 111 KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170
+ +Y + + + S L I + + +G Y CS
Sbjct: 107 WKDK-LVYNVLYYRNGKAFKFFHW--------------NSNLTILKTNISHNGTYHCSGM 151
Query: 171 NA---DVASVYVHV 181
A + V V
Sbjct: 152 GKHRYTSAGISVTV 165
Score = 67.6 bits (165), Expect = 6e-14
Identities = 27/141 (19%), Positives = 47/141 (33%), Gaps = 20/141 (14%)
Query: 51 TLHIKWAQKRDAGVYECQ-LSTQPVRSFFVNLNVVVP--TAEILGSPDLHVDEGSTINLT 107
L I G Y C + S +++ V + S + EG+ + L+
Sbjct: 132 NLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLS 191
Query: 108 CSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167
C K + P + + G ++ +G T+S I A +DSG Y C
Sbjct: 192 CETKLLLQRPGLQLY--------FSFYMGSKTL---RGRNTSSEYQILTARREDSGLYWC 240
Query: 168 SPSNA------DVASVYVHVL 182
+ + + VL
Sbjct: 241 EAATEDGNVLKRSPELELQVL 261
Score = 51.5 bits (123), Expect = 3e-08
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 18/99 (18%)
Query: 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTT 149
L P + V + T+ L C + + P + W+ + +
Sbjct: 5 TLQPPWVSVFQEETVTLHCEVLHLPGSSSTQ-WFLNGTATQTSTPS-------------- 49
Query: 150 SYLLIQQAELKDSGKYSCSPSNADV-ASVYVHVLNGEYT 187
I A + DSG+Y C + + + + G
Sbjct: 50 --YRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLL 86
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 78.6 bits (193), Expect = 3e-17
Identities = 27/181 (14%), Positives = 53/181 (29%), Gaps = 22/181 (12%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL-- 69
R+ + + R S ++ I AG+ C+
Sbjct: 157 LNVSLCARYPEKRFVP-------DGNRISWDSKK-----GFTIPSYMISYAGMVFCEAKI 204
Query: 70 ---STQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD 126
S Q + V + + + S + + G + L C+ + W +
Sbjct: 205 NDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPS 264
Query: 127 EVISYDS--SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ +R + + + S L I D G Y+C+ S+ S +V V
Sbjct: 265 SKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 324
Query: 182 L 182
Sbjct: 325 H 325
Score = 75.6 bits (185), Expect = 3e-16
Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 27/191 (14%)
Query: 8 KGLLPTRVSWIR---------HRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQ 58
++W + ++ + + D + +K A
Sbjct: 574 DRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNAS 633
Query: 59 KRDAGVYECQLS---TQPVRSFFVNLNVVVPTA-EILGSP-DLHVDEGSTINLTCSIKYS 113
+D G Y C T+ L V+ A I G+ + G +I ++C+ +
Sbjct: 634 LQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGN 693
Query: 114 PEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA- 172
P P I W+ +E + DS V+ + L I++ +D G Y+C +
Sbjct: 694 PPP--QIMWFKDNETLVEDSGI----VLKD----GNRNLTIRRVRKEDEGLYTCQACSVL 743
Query: 173 --DVASVYVHV 181
+ +
Sbjct: 744 GCAKVEAFFII 754
Score = 69.0 bits (168), Expect = 6e-14
Identities = 21/149 (14%), Positives = 46/149 (30%), Gaps = 21/149 (14%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCS 109
+ + +Y+C+ + ++ +V EI PD+ E +++L C+
Sbjct: 514 VSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRG-PEITLQPDMQPTEQESVSLWCT 572
Query: 110 IKYSPEPPAYIFWYHHDEVI--------------SYDSSRGGVSVITEKGEVTTSYLLIQ 155
S + WY + D+ + + + ++
Sbjct: 573 ADRSTFE--NLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELK 630
Query: 156 QAELKDSGKYSCSPSNA---DVASVYVHV 181
A L+D G Y C + V +
Sbjct: 631 NASLQDQGDYVCLAQDRKTKKRHCVVRQL 659
Score = 68.6 bits (167), Expect = 8e-14
Identities = 37/167 (22%), Positives = 52/167 (31%), Gaps = 37/167 (22%)
Query: 51 TLHIKWAQKRDAGVYECQLS---TQPVRSFFVNLNVVVP---TAEILGSPDLHVDEGSTI 104
L I +RD G Y L+ ++ +S V+L V VP + L SP G+T
Sbjct: 382 VLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQ 441
Query: 105 NLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV----------------- 147
LTC++ P PP +I WY E + VSV
Sbjct: 442 TLTCTVYAIP-PPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVN 500
Query: 148 ----------TTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ + S Y C N + HV
Sbjct: 501 KNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHV 547
Score = 64.8 bits (157), Expect = 2e-12
Identities = 25/182 (13%), Positives = 51/182 (28%), Gaps = 21/182 (11%)
Query: 8 KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67
+ L + + D + + + TL I + D G+Y C
Sbjct: 249 RTELNVGIDFNWEYP-SSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTC 307
Query: 68 QLSTQP-VRSFFVNLNVVVP---TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWY 123
S+ + + V + G + + P P I WY
Sbjct: 308 AASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPP--EIKWY 365
Query: 124 HHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVH 180
+ + + + L I + +D+G Y+ +N + S V
Sbjct: 366 KNGIPLESNHTI-----------KAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVS 414
Query: 181 VL 182
++
Sbjct: 415 LV 416
Score = 62.9 bits (152), Expect = 7e-12
Identities = 28/172 (16%), Positives = 46/172 (26%), Gaps = 37/172 (21%)
Query: 15 VSWIRHRDIHILTVGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS--- 70
+ W+ + T SD F TL I D G Y+C
Sbjct: 59 LDWLWPNNQSGSEQRVEVTECSDGLFCK---------TLTIPKVIGNDTGAYKCFYRETD 109
Query: 71 TQPVRSFFVNLNV---VVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH-- 125
V +V + ++ G + ++ T+ + C S + Y
Sbjct: 110 LASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKR 169
Query: 126 ----DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173
IS+DS +G I + +G C D
Sbjct: 170 FVPDGNRISWDSKKG---------------FTIPSYMISYAGMVFCEAKIND 206
Score = 60.2 bits (145), Expect = 6e-11
Identities = 20/131 (15%), Positives = 45/131 (34%), Gaps = 14/131 (10%)
Query: 54 IKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSP-DLHVDEGSTINLTCSIKY 112
++ ++ C + T+ ++++ +P + L + +T+ +TC
Sbjct: 1 MQSKVLLAVALWLC-VETRAASVGLPSVSLDLPR--LSIQKDILTIKANTTLQITCR--- 54
Query: 113 SPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172
+ W ++ V V + L I + D+G Y C
Sbjct: 55 -GQRDLDWLWPNNQSGSEQR-----VEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRET 108
Query: 173 D-VASVYVHVL 182
D + +YV+V
Sbjct: 109 DLASVIYVYVQ 119
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 77.9 bits (191), Expect = 3e-17
Identities = 29/182 (15%), Positives = 52/182 (28%), Gaps = 34/182 (18%)
Query: 9 GLLPTRVSWIRHRDIHILTVGSYTYT------SDQRFSAIHRREGDEWTLHIKWAQKRDA 62
+ W I IL T +D+ S + + L IK + D+
Sbjct: 20 QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDS 79
Query: 63 GVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFW 122
Y C++ Q + + D H+ +G ++ LT P +
Sbjct: 80 DTYICEVEDQKEEVQLLVFGLTAN-------SDTHLLQGQSLTLTLES--PPGSSPSVQC 130
Query: 123 YHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN---ADVASVYV 179
L + Q EL+DSG ++C+ + +
Sbjct: 131 RSPRGKNIQGGKT----------------LSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 174
Query: 180 HV 181
V
Sbjct: 175 VV 176
Score = 50.6 bits (120), Expect = 7e-08
Identities = 27/165 (16%), Positives = 60/165 (36%), Gaps = 22/165 (13%)
Query: 48 DEWTLHIKWAQKRDAGVYECQLS-TQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINL 106
TL + + +D+G + C + Q F +++ V+ S ++ EG +
Sbjct: 140 GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA---SSIVYKKEGEQVEF 196
Query: 107 TCSIKYSPE---PPAYIFWY-----HHDEVISYDSSRGGVSV-------ITEKGEVTTSY 151
+ + ++ E ++W I++D VSV + G+ +
Sbjct: 197 SFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLH 256
Query: 152 LLIQQAELK--DSGKYSCSPSNAD-VASVYVHVLNGEYTGWSESL 193
L + QA + SG + + V+++ T ++L
Sbjct: 257 LTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNL 301
Score = 50.6 bits (120), Expect = 9e-08
Identities = 20/135 (14%), Positives = 36/135 (26%), Gaps = 33/135 (24%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVR-SFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCS 109
TL Q +G L + + VNL V+ T NLTC
Sbjct: 258 TLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRAT-------------QLQKNLTCE 304
Query: 110 IKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169
+ P + ++ + ++G + C
Sbjct: 305 VWGPTSPKLMLSLKLENKEAK-----------------VSKREKAVWVLNPEAGMWQCLL 347
Query: 170 SNAD--VASVYVHVL 182
S++ + + VL
Sbjct: 348 SDSGQVLLESNIKVL 362
Score = 46.3 bits (109), Expect = 2e-06
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 14/97 (14%)
Query: 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRG----GVSVITEKGEVTTSY-- 151
+G T+ LTC+ W + +++ + G S + ++ + S
Sbjct: 6 GKKGDTVELTCTASQKKSIQ--FHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63
Query: 152 -----LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
L+I+ +++DS Y C + V + V
Sbjct: 64 QGNFPLIIKNLKIEDSDTYICEVED-QKEEVQLLVFG 99
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 75.5 bits (186), Expect = 3e-17
Identities = 28/162 (17%), Positives = 57/162 (35%), Gaps = 30/162 (18%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC-------QLSTQPVRSFFVNLNVVVP 86
+++ +G TL + ++ D GVY C ++ T L +
Sbjct: 49 IQSRKYKMSS--DGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETS------SKLLLQAT 100
Query: 87 ---TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE 143
+ GST+ L P P + W+H +++ +S +++
Sbjct: 101 PQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVP--AMTWFHGQKLLQ-NSEN--ITIENT 155
Query: 144 KGEVTTSYLLIQQAELK-DSGKYSCSPSNA---DVASVYVHV 181
+ L+++ + K +GKY SN A + V +
Sbjct: 156 EHYTH---LVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEI 194
Score = 51.2 bits (123), Expect = 2e-08
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 11/91 (12%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D+ G L+C I P P I WY + + ++ G T L +
Sbjct: 16 DVTTKLGEAAQLSCQIVGRPLP--DIKWYRFGKELIQSRKY----KMSSDGRTHT--LTV 67
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVL 182
E +D G Y+C +N S + +
Sbjct: 68 MTEEQEDEGVYTCIATNEVGEVETSSKLLLQ 98
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 77.5 bits (190), Expect = 4e-17
Identities = 28/188 (14%), Positives = 58/188 (30%), Gaps = 22/188 (11%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRR-------EGDEWTLHIKWAQKRDAGV 64
T+V+W + + V Y + A +R + T+ + + D GV
Sbjct: 47 ITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGV 106
Query: 65 YECQLSTQPV--RSFFVNLNVVVPTAEILGSPDLHV-----DEGSTINLTCSIKYSPEPP 117
Y C+ +T P R +NL V+ + + + + TC+ PP
Sbjct: 107 YICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGK-PP 165
Query: 118 AYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DV 174
+ + W + + S + + +C +
Sbjct: 166 SVVSWETRLKGEAEYQEIRN----PNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFK 221
Query: 175 ASVYVHVL 182
S+ ++V
Sbjct: 222 ESLTLNVQ 229
Score = 65.2 bits (158), Expect = 7e-13
Identities = 25/179 (13%), Positives = 47/179 (26%), Gaps = 26/179 (14%)
Query: 9 GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
G P+ VSW + + + I + +++ C
Sbjct: 162 GKPPSVVSW--ETRLKGEAEYQEIRNPNGTVTVIS-------RYRLVPSREAHQQSLACI 212
Query: 69 LS-TQPVRSFFVNLNV-VVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD 126
++ + LNV P I G + + LTC +P P W +
Sbjct: 213 VNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANP-PATEYHWTTLN 271
Query: 127 EVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ ++ +G Y C +N V V++
Sbjct: 272 GSLPKGVEAQNRTL-----------FFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT 319
Score = 47.1 bits (111), Expect = 1e-06
Identities = 17/110 (15%), Positives = 35/110 (31%), Gaps = 14/110 (12%)
Query: 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPP--AYIFWYHHDE-----VISYDSSRGGV 138
P+ + + ++ G+ + L CS + W V Y+ S G
Sbjct: 14 PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVS 73
Query: 139 SVITEKGEVT-------TSYLLIQQAELKDSGKYSCSPSNADVASVYVHV 181
+ + V + + + EL+D G Y C + + +
Sbjct: 74 VLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQL 123
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 75.7 bits (186), Expect = 6e-17
Identities = 31/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS-TQPVRSFFVNLNVVVPTAE--- 89
+ R I R W+L ++ D G Y C + L+V+ +
Sbjct: 57 RGEHRIGGIKLRHQQ-WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPI 115
Query: 90 -ILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147
G P + GS + C + +P +I W H EV G +T
Sbjct: 116 LQAGLPANQTAVLGSDVEFHCKVYSDAQP--HIQWLKHVEVNGSKVGPDGTPYVTVLKSW 173
Query: 148 TT------SYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ L + +D G+Y C +N + ++ V
Sbjct: 174 ISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVH 217
Score = 53.4 bits (128), Expect = 6e-09
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 10/91 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
L V +T+ C +P P I W + + GG+ + ++ L++
Sbjct: 24 LLAVPAANTVRFRCPAAGNPTP--SISWLKNGREFRGEHRIGGIKLRHQQWS-----LVM 76
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ D G Y+C N + + VL
Sbjct: 77 ESVVPSDRGNYTCVVENKFGSIRQTYTLDVL 107
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 77.7 bits (191), Expect = 6e-17
Identities = 34/176 (19%), Positives = 53/176 (30%), Gaps = 20/176 (11%)
Query: 11 LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70
LP + W I T + R + L I+ + AG + C
Sbjct: 648 LPLNIDWTLD-GQAISEDLGITTSRVGRRGS---------VLTIEAVEASHAGNFTCHAR 697
Query: 71 TQP-VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVI 129
+ F LNV VP IL D +GS + C P+P + W
Sbjct: 698 NLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQ--VTWKKAVGDT 755
Query: 130 SYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN----ADVASVYVHV 181
+ ++ V L + + + G Y C N A + + V
Sbjct: 756 PGEYKD---LKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISV 808
Score = 76.1 bits (187), Expect = 2e-16
Identities = 33/175 (18%), Positives = 52/175 (29%), Gaps = 24/175 (13%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS-TQ 72
+SW I Y + L+I D G+Y+C
Sbjct: 460 EISWELD-GKKIANNDRYQVGQY-----VTVNGDVVSYLNITSVHANDGGLYKCIAKSKV 513
Query: 73 PVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYD 132
V LNV I + G T+ +TC + P I W + + +
Sbjct: 514 GVAEHSAKLNVYGLPY-IRQMEKKAIVAGETLIVTCPVAGYPID--SIVWERDNRALPIN 570
Query: 133 SSRGGVSVITEKGEVTTSYLLIQQAELK-DSGKYSCSPSNA----DVASVYVHVL 182
+ + G L+I+ E D Y+C N S+ V V+
Sbjct: 571 RKQ----KVFPNGT-----LIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVM 616
Score = 75.7 bits (186), Expect = 3e-16
Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 10/139 (7%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQ---PVRSFFVNLNVVVPTAEILGSP-DLHVDEGSTINL 106
L I+ +K D G+Y+C + S + L I + + ++ G ++ L
Sbjct: 390 VLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFL 449
Query: 107 TCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166
C +P P I W + I+ + +T G+V SYL I D G Y
Sbjct: 450 KCVAGGNPTPE--ISWELDGKKIANNDRYQVGQYVTVNGDVV-SYLNITSVHANDGGLYK 506
Query: 167 CSPSNA---DVASVYVHVL 182
C + S ++V
Sbjct: 507 CIAKSKVGVAEHSAKLNVY 525
Score = 75.4 bits (185), Expect = 4e-16
Identities = 37/172 (21%), Positives = 55/172 (31%), Gaps = 31/172 (18%)
Query: 15 VSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS-TQP 73
W + I T +D R + TL IK A D+G Y C ++ +
Sbjct: 280 FRWYK--FIEGTTRKQAVVLND-------RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVG 330
Query: 74 VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDS 133
S L V P + + P VD G TC +P + W + I +
Sbjct: 331 GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK--TVSWMKDGKAIGHSE 388
Query: 134 SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
S L I+ + +D G Y C N AS + +
Sbjct: 389 ----------------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLG 424
Score = 73.4 bits (180), Expect = 2e-15
Identities = 31/138 (22%), Positives = 46/138 (33%), Gaps = 13/138 (9%)
Query: 51 TLHIKWAQKR-DAGVYECQLSTQPVRSFFVNLNVVV---PTAEILGSPDLHVDEGSTINL 106
TL I+ ++ D Y C Q S +L V V P + G + L
Sbjct: 580 TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTL 639
Query: 107 TCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166
CS+ P I W + IS D V S L I+ E +G ++
Sbjct: 640 HCSVPGGD-LPLNIDWTLDGQAISEDLGITTSRVGRR-----GSVLTIEAVEASHAGNFT 693
Query: 167 CSPSNA---DVASVYVHV 181
C N + ++V
Sbjct: 694 CHARNLAGHQQFTTPLNV 711
Score = 66.1 bits (161), Expect = 6e-13
Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 31/189 (16%)
Query: 9 GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDA-GVYEC 67
VSW + + D ++ LHI+ D Y+C
Sbjct: 167 ADFVEVVSWHTDEEENYFP----GAEYDGKYLV-----LPSGELHIREVGPEDGYKSYQC 217
Query: 68 Q----LSTQPVRSFFVNLNVVV--------PTAEILGSPDLHVDEGSTINLTCSIKYSPE 115
+ L+ + S V+ + ST+ L C + P
Sbjct: 218 RTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPV 277
Query: 116 PPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA--- 172
P WY E +R V+ ++ + + L+I+ A ++DSGKY C +N+
Sbjct: 278 P--VFRWYKFIEGT----TRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG 331
Query: 173 DVASVYVHV 181
+ + V
Sbjct: 332 ESVETVLTV 340
Score = 59.6 bits (144), Expect = 1e-10
Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 16/140 (11%)
Query: 43 HRREGDEWTLHIK------WAQKRDAGVYECQLSTQP--VRSFFVNLNVVVPTAEILGSP 94
R+ + L + Q+ A VY C Q + S V++ VV
Sbjct: 87 LRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVN 146
Query: 95 DLHVDEGSTINLTCSI-KYSPEPPAYIFWYHHDEVISYDSSR-GGVSVITEKGEVTTSYL 152
HV G++ + C I + + + W+ +E + + G ++ GE L
Sbjct: 147 KEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGE-----L 201
Query: 153 LIQQAELKDS-GKYSCSPSN 171
I++ +D Y C +
Sbjct: 202 HIREVGPEDGYKSYQCRTKH 221
Score = 54.2 bits (130), Expect = 6e-09
Identities = 15/126 (11%), Positives = 40/126 (31%), Gaps = 9/126 (7%)
Query: 52 LHIKWAQKRDAGVYECQ----LSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLT 107
+++ + + ++ +Q + + + + P + + + +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 108 CSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT-TSYLLIQQAELKDSGKYS 166
C +P P I W D D G+ I+ G++ + + + Y+
Sbjct: 61 CKASGNPMP--EIIWIRSDGTAVGDVP--GLRQISSDGKLVFPPFRAEDYRQEVHAQVYA 116
Query: 167 CSPSNA 172
C N
Sbjct: 117 CLARNQ 122
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 76.1 bits (187), Expect = 8e-17
Identities = 34/174 (19%), Positives = 57/174 (32%), Gaps = 34/174 (19%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ-------------LSTQPVRSFFVN 80
R G++ L I D G Y + LS Q +
Sbjct: 150 RYSDRVKTGV--TGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAE 207
Query: 81 LNVVVPTAEILGSP---------DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISY 131
+ A + + + EG +NLTC++ +PP + W +++ +
Sbjct: 208 FQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV--WGDPPPEVSWLKNEKAL-- 263
Query: 132 DSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+S ++ E G T+Y I DSGKY N + + V V
Sbjct: 264 -ASDDHCNLKFEAGR--TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 314
Score = 65.7 bits (160), Expect = 5e-13
Identities = 29/172 (16%), Positives = 52/172 (30%), Gaps = 32/172 (18%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71
T + W + + I + D++ H + TL I K+DAG+YE L
Sbjct: 36 ETHIVWYKD-EREI--------SVDEK----HDFKDGICTLLITEFSKKDAGIYEVILKD 82
Query: 72 QP-VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCS----------IKYSPEPPAYI 120
+ L ++ + + + + Y + +
Sbjct: 83 DRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLK--V 140
Query: 121 FWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172
W H+ I S R V ++ L I + D GKY +
Sbjct: 141 NWSHNGSAIR-YSDR--VKTGVTGEQIW---LQINEPTPNDKGKYVMELFDG 186
Score = 54.1 bits (130), Expect = 5e-09
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 13/104 (12%)
Query: 81 LNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSV 140
++ + V + L C + +I WY + IS D
Sbjct: 2 IDPFTG-PHFVEYLSWEVTGECNVLLKCKVANIK-KETHIVWYKDEREISVDE-----KH 54
Query: 141 ITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ G T LLI + KD+G Y + D + + +
Sbjct: 55 DFKDGICT---LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 95
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 76.8 bits (189), Expect = 8e-17
Identities = 30/135 (22%), Positives = 43/135 (31%), Gaps = 15/135 (11%)
Query: 51 TLHIKWAQKRDAGVYECQ-LSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCS 109
L I D+G Y C S L V+VP + +L+ E I C+
Sbjct: 276 NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECA 335
Query: 110 IKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169
+ P P + W + +V+ S I L I D G Y C
Sbjct: 336 VSGKPVPT--VNWMKNGDVVI-PSDY---FQIVGGSN-----LRILGVVKSDEGFYQCVA 384
Query: 170 SNA---DVASVYVHV 181
N +S + V
Sbjct: 385 ENEAGNAQSSAQLIV 399
Score = 75.3 bits (185), Expect = 3e-16
Identities = 31/143 (21%), Positives = 45/143 (31%), Gaps = 21/143 (14%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQ--PVRSFFVNLNVVVPTAE------ILGSPDLHVDEGS 102
L I Q D+GVY C + ++ + ++ EG
Sbjct: 178 ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGK 237
Query: 103 TINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDS 162
L C + P P W +EVI S + + LLI DS
Sbjct: 238 DAVLECCVSGYPPP--SFTWLRGEEVIQLRSKK---YSLLGGSN-----LLISNVTDDDS 287
Query: 163 GKYSCSPSNA---DVASVYVHVL 182
G Y+C + AS + VL
Sbjct: 288 GTYTCVVTYKNENISASAELTVL 310
Score = 64.9 bits (158), Expect = 1e-12
Identities = 31/139 (22%), Positives = 50/139 (35%), Gaps = 15/139 (10%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQP---VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLT 107
+ K D G+Y+C+ S + S + V P + + + G T+ L
Sbjct: 83 NILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLK 142
Query: 108 CSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167
C + P P I W + + ++ V V+ G L I + + DSG Y C
Sbjct: 143 CEVIGDPMP--TIHWQKNQQDLNPIPGDSRV-VVLPSGA-----LQISRLQPGDSGVYRC 194
Query: 168 SPSNA----DVASVYVHVL 182
S N V +L
Sbjct: 195 SARNPASTRTGNEAEVRIL 213
Score = 41.4 bits (97), Expect = 1e-04
Identities = 16/87 (18%), Positives = 24/87 (27%), Gaps = 3/87 (3%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153
D G + L CS + P W ++ G + +L
Sbjct: 29 SDAVTMRGGNVLLNCSAESDRGVPVIK-WKKDGLIL--ALGMDDRKQQLPNGSLLIQNIL 85
Query: 154 IQQAELKDSGKYSCSPSNADVASVYVH 180
+ D G Y C S D S+
Sbjct: 86 HSRHHKPDEGLYQCEASLGDSGSIISR 112
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 74.5 bits (183), Expect = 9e-17
Identities = 28/121 (23%), Positives = 41/121 (33%), Gaps = 17/121 (14%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSI 110
+ I A D+G Y CQ + S V L V + +L +P E I+L C
Sbjct: 55 SYFIDAATVDDSGEYRCQ-TQLSTLSDPVQLEVHIG-WLLLQAPRWVFKEEDPIHLRCHS 112
Query: 111 KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170
+ + + + + Y S I +A LKDSG Y C
Sbjct: 113 WKNT-ALHKVTYLQNGKGRKYFHH--------------NSDFYIPKATLKDSGSYFCRGL 157
Query: 171 N 171
Sbjct: 158 V 158
Score = 46.8 bits (111), Expect = 8e-07
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 18/96 (18%)
Query: 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTT 149
L V E ++ L C YSPE + W+H++ +IS +S
Sbjct: 11 FLEPQWYRVLEKDSVTLKCQGAYSPEDQST-QWFHNESLISSQASS-------------- 55
Query: 150 SYLLIQQAELKDSGKYSCSPSNADV-ASVYVHVLNG 184
I A + DSG+Y C + + V + V G
Sbjct: 56 --YFIDAATVDDSGEYRCQTQLSTLSDPVQLEVHIG 89
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 77.0 bits (189), Expect = 9e-17
Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 15/178 (8%)
Query: 11 LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70
+W R + Y F+ + TL I A+ D+GV+ C +
Sbjct: 240 SSVYSTWKR-ENSQTKLQEKYNSWHHGDFNYERQA-----TLTISSARVNDSGVFMCYAN 293
Query: 71 -TQPVRSFFVNLNVVVP---TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD 126
T + L VV + + + V++G ++L + P P + W + +
Sbjct: 294 NTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFP-KPEHQQWIYMN 352
Query: 127 EVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADV---ASVYVHV 181
+ D E S L + + + + G Y+ SN+DV + V+V
Sbjct: 353 RTFT-DKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYV 409
Score = 67.8 bits (165), Expect = 1e-13
Identities = 24/180 (13%), Positives = 43/180 (23%), Gaps = 23/180 (12%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ--L 69
T S + + + + C
Sbjct: 143 VTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAY------------HRLCLHCSVDQ 190
Query: 70 STQPVRSFFVNLNVVVPTAE----ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH 125
+ V S L V + + EG +TC+IK Y W
Sbjct: 191 EGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSV-YSTWKRE 249
Query: 126 DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ + + + L I A + DSG + C +N + + V+
Sbjct: 250 NSQTK-LQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVV 308
Score = 67.0 bits (163), Expect = 3e-13
Identities = 33/180 (18%), Positives = 46/180 (25%), Gaps = 24/180 (13%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS- 70
P WI T Y + S I LH+ + + G Y +S
Sbjct: 343 PEHQQWIY--MNRTFTDKWEDYPKSENESNIRYVS----ELHLTRLKGTEGGTYTFLVSN 396
Query: 71 TQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVIS 130
+ + N+ V EIL D L C PEP I WY
Sbjct: 397 SDVNAAIAFNVYVNTK-PEIL-----TYDRLVNGMLQCVAAGFPEPT--IDWYFCPGTEQ 448
Query: 131 YDSSRG------GVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
S+ ++ I + K +G C N A
Sbjct: 449 RCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAF 508
Score = 58.1 bits (140), Expect = 2e-10
Identities = 26/127 (20%), Positives = 44/127 (34%), Gaps = 25/127 (19%)
Query: 60 RDAGVYECQL-----STQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSP 114
R A + C L V+ P + G DL V G I L C
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLC------ 58
Query: 115 EPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADV 174
P ++ W + ++ + + ++AE ++GKY+C+ +
Sbjct: 59 TDPGFVKWTFEILDETNENKQN--------------EWITEKAEATNTGKYTCTNKHGLS 104
Query: 175 ASVYVHV 181
S+YV V
Sbjct: 105 NSIYVFV 111
Score = 52.0 bits (124), Expect = 3e-08
Identities = 18/147 (12%), Positives = 38/147 (25%), Gaps = 17/147 (11%)
Query: 43 HRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGS 102
E + + A+ + G Y C S + + V P L L+ E +
Sbjct: 73 ETNENKQNEWITEKAEATNTGKYTCTNKHGLSNS--IYVFVRDPAKLFLVDRSLYGKEDN 130
Query: 103 TINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELK-D 161
+ C + +P + + + + K ++I+ +
Sbjct: 131 DTLVRCPL---TDPEVTNYSLKGCQGKP--LPKDLRFIPDPKA-----GIMIKSVKRAYH 180
Query: 162 SGKYSCSPSNADV----ASVYVHVLNG 184
CS + V
Sbjct: 181 RLCLHCSVDQEGKSVLSEKFILKVRPA 207
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 74.0 bits (182), Expect = 1e-16
Identities = 34/155 (21%), Positives = 50/155 (32%), Gaps = 18/155 (11%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--VRSFFVNLNVVVPTAEIL 91
S QR ++EG L I A DAG+Y CQ + + V L +
Sbjct: 44 ISTQRVV--VQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFRE 101
Query: 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY 151
+G + C + SP P + W +H+E ++ S +
Sbjct: 102 VVSPQEFKQGEDAEVVCRVSSSPAPA--VSWLYHNEEVTTISD--NRFAMLANN-----N 152
Query: 152 LLIQQAELKDSGKYSCSPSN-----ADVASVYVHV 181
L I D G Y C D + V V
Sbjct: 153 LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV 187
Score = 47.5 bits (113), Expect = 4e-07
Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 89 EILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147
++ S + + G + TC+ PE I WY+ + R V+ ++G
Sbjct: 4 QVTISLSKVELSVGESKFFTCTAIGEPES---IDWYNPQGEKIISTQR---VVVQKEGVR 57
Query: 148 TTSYLLIQQAELKDSGKYSCSPSN----ADVASVYVHVL 182
+ L I A ++D+G Y C ++ A+V + +
Sbjct: 58 SR--LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY 94
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 73.6 bits (181), Expect = 1e-16
Identities = 33/158 (20%), Positives = 58/158 (36%), Gaps = 25/158 (15%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS--TQPVRSFFVNLNVVVPTAEIL 91
D R+ + L I + D G+Y C + L V + +I
Sbjct: 50 LFDTRY----SIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKP-KIT 104
Query: 92 GSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTS 150
P ++ + EG L C+ +P+P + W D + ++SR + E G
Sbjct: 105 RPPINVKIIEGLKAVLPCTTMGNPKPS--VSWIKGDSALR-ENSR---IAVLESGS---- 154
Query: 151 YLLIQQAELKDSGKYSCSPSN------ADVASVYVHVL 182
L I + +D+G+Y C N + + + V V
Sbjct: 155 -LRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVF 191
Score = 49.0 bits (117), Expect = 1e-07
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 9/78 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+ C+++ P+P I W + +I +R + L I
Sbjct: 16 TVDALVEEVATFMCAVESYPQP--EISWTRNKILIKLFDTRYSI-------RENGQLLTI 66
Query: 155 QQAELKDSGKYSCSPSNA 172
E D G Y C+ +N
Sbjct: 67 LSVEDSDDGIYCCTANNG 84
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 76.9 bits (189), Expect = 1e-16
Identities = 33/177 (18%), Positives = 56/177 (31%), Gaps = 38/177 (21%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71
T W + + ++D R TL + + D G YEC +
Sbjct: 317 NTTYLWWV-NNQSLPVSPRLQLSNDNR------------TLTLLSVTRNDVGPYECGIQN 363
Query: 72 Q--PVRSFFVNLNVVVPTAEILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEV 128
+ S V LNV+ + SP + G ++L+C + PPA W +
Sbjct: 364 ELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHA--ASNPPAQYSWLIDGNI 421
Query: 129 ISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ L I K+SG Y+C +N+ + +
Sbjct: 422 QQHTQE-----------------LFISNITEKNSGLYTCQANNSASGHSRTTVKTIT 461
Score = 76.1 bits (187), Expect = 2e-16
Identities = 30/137 (21%), Positives = 48/137 (35%), Gaps = 25/137 (18%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQ--PVRSFFVNLNVVV-PTAEILGSPDLHVDEGSTINLT 107
TL + + DA Y C + RS V L+V+ P I+ PD G+ +NL+
Sbjct: 521 TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLS 580
Query: 108 CSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167
C +P P W + + L I + ++G Y+C
Sbjct: 581 CHSASNPSP--QYSWRINGIPQQHTQV-----------------LFIAKITPNNNGTYAC 621
Query: 168 SPSNA---DVASVYVHV 181
SN S+ +
Sbjct: 622 FVSNLATGRNNSIVKSI 638
Score = 68.4 bits (167), Expect = 9e-14
Identities = 21/140 (15%), Positives = 43/140 (30%), Gaps = 19/140 (13%)
Query: 51 TLHIKWAQKRDAGVYECQLS----TQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINL 106
+L I+ + D G Y + + + +P I + V++ +
Sbjct: 72 SLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAF 131
Query: 107 TCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166
TC + A W+ +++ + + L + D+ Y
Sbjct: 132 TCEPE---TQDATYLWWVNNQSLPVSPRL--------QLSNGNRTLTLFNVTRNDTASYK 180
Query: 167 CSPSN----ADVASVYVHVL 182
C N SV ++VL
Sbjct: 181 CETQNPVSARRSDSVILNVL 200
Score = 68.1 bits (166), Expect = 1e-13
Identities = 27/124 (21%), Positives = 42/124 (33%), Gaps = 22/124 (17%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQ--PVRSFFVNLNVVVPTAEILGSP-DLHVDEGSTINLT 107
TL + + D Y+C+ RS V LNV+ SP + G +NL+
Sbjct: 165 TLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLS 224
Query: 108 CSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167
C +P W+ + +T L I + +SG Y+C
Sbjct: 225 CHAASNPPAQ--YSWFVNGTFQQ-----------------STQELFIPNITVNNSGSYTC 265
Query: 168 SPSN 171
N
Sbjct: 266 QAHN 269
Score = 65.0 bits (158), Expect = 1e-12
Identities = 24/146 (16%), Positives = 43/146 (29%), Gaps = 20/146 (13%)
Query: 51 TLHIKWAQKRDAGVYECQ---LSTQPVRSFFVNLNVVVPTAEILGSP--DLHVDEGSTIN 105
L I ++G Y CQ T R+ + V + + V++ +
Sbjct: 249 ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVA 308
Query: 106 LTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165
LTC + W+ +++ + + L + D G Y
Sbjct: 309 LTCEPEIQNTT---YLWWVNNQSLPVSPRL--------QLSNDNRTLTLLSVTRNDVGPY 357
Query: 166 SCSPSN----ADVASVYVHVLNGEYT 187
C N V ++VL G
Sbjct: 358 ECGIQNELSVDHSDPVILNVLYGPDD 383
Score = 64.2 bits (156), Expect = 2e-12
Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 20/141 (14%)
Query: 51 TLHIKWAQKRDAGVYECQLS---TQPVRSFFVNLNVV--VPTAEILGSPDLHVDEGSTIN 105
L I ++++G+Y CQ + + R+ + V +P I + V++ +
Sbjct: 427 ELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVA 486
Query: 106 LTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165
TC + W+ + + + + L + D+ Y
Sbjct: 487 FTCEPEAQNTT---YLWWVNGQSLPVSPRLQLSN--------GNRTLTLFNVTRNDARAY 535
Query: 166 SCSPSN----ADVASVYVHVL 182
C N V + VL
Sbjct: 536 VCGIQNSVSANRSDPVTLDVL 556
Score = 46.5 bits (110), Expect = 2e-06
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 12/99 (12%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWY------HHDEVISYDSSRGGVSVITEKGE 146
S +V EG + L P+ WY + ++I Y +
Sbjct: 6 STPFNVAEGKEVLLLVHN--LPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSG 63
Query: 147 VTTSY----LLIQQAELKDSGKYSCSPSNADVASVYVHV 181
Y LLIQ D+G Y+ +D+ +
Sbjct: 64 REIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATG 102
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 74.1 bits (182), Expect = 1e-16
Identities = 33/174 (18%), Positives = 55/174 (31%), Gaps = 34/174 (19%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC-------------QLSTQPVRSFFVN 80
R G++ L I D G Y LS Q +
Sbjct: 45 RYSDRVKTGV--TGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAE 102
Query: 81 LNVVVPTAEILGSP---------DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISY 131
+ A + + + EG +NLTC++ P P + W +++ ++
Sbjct: 103 FQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPP--EVSWLKNEKALA- 159
Query: 132 DSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ ++ E G T+Y I DSGKY N + + V V
Sbjct: 160 QTDH--CNLKFEAGR--TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209
Score = 48.7 bits (116), Expect = 2e-07
Identities = 16/83 (19%), Positives = 23/83 (27%), Gaps = 7/83 (8%)
Query: 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTT 149
+ + I L + Y E + W H+ I Y GE
Sbjct: 6 LSATDLKIQSTAEGIQLYSFVTYYVEDLK-VNWSHNGSAIRYSDRV----KTGVTGEQIW 60
Query: 150 SYLLIQQAELKDSGKYSCSPSNA 172
L I + D GKY +
Sbjct: 61 --LQINEPTPNDKGKYVMELFDG 81
Score = 36.0 bits (83), Expect = 0.004
Identities = 7/60 (11%), Positives = 15/60 (25%), Gaps = 14/60 (23%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC-------QLSTQPVRSFFVNLNVVVP 86
+ + G I D+G Y ++ ++V +P
Sbjct: 159 AQTDHCN-LKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSD------FTVSVFIP 211
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 75.2 bits (185), Expect = 2e-16
Identities = 33/174 (18%), Positives = 53/174 (30%), Gaps = 23/174 (13%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71
P + W + + S QR ++EG L I A DAG+Y CQ +
Sbjct: 32 PESIDW-YNPQGEKII-------STQRVVV--QKEGVRSRLTIYNANIEDAGIYRCQATD 81
Query: 72 Q--PVRSFFVNLNVVVPTAEILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEV 128
+ V L + +G + C + SP P + W +H+E
Sbjct: 82 AKGQTQEATVVLEIYQK-LTFREVVSPQEFKQGEDAEVVCRVSSSPAP--AVSWLYHNEE 138
Query: 129 ISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVL 182
++ S + L I D G Y C + +
Sbjct: 139 VTTISD--NRFAMLANNN-----LQILNINKSDEGIYRCEGRVEARGEIDFRDI 185
Score = 69.5 bits (170), Expect = 2e-14
Identities = 27/140 (19%), Positives = 49/140 (35%), Gaps = 18/140 (12%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFFVN--LNVVVPTAEILGSP---DLHVDEGSTIN 105
L I K D G+Y C+ + + +V I + + G +
Sbjct: 154 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMT 213
Query: 106 LTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165
+C SPEP I W+ + ++I ++ + + E L ++ D G Y
Sbjct: 214 FSCRASGSPEP--AISWFRNGKLIE-ENEK--YILKGSNTE-----LTVRNIINSDGGPY 263
Query: 166 SCSPSNA---DVASVYVHVL 182
C +N D ++ V
Sbjct: 264 VCRATNKAGEDEKQAFLQVF 283
Score = 52.1 bits (125), Expect = 2e-08
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 89 EILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147
++ S + + G + TC+ PE I WY+ + R V+ ++G
Sbjct: 6 QVTISLSKVELSVGESKFFTCTAIGEPES---IDWYNPQGEKIISTQR---VVVQKEGVR 59
Query: 148 TTSYLLIQQAELKDSGKYSCSPSNA 172
+ L I A ++D+G Y C ++A
Sbjct: 60 SR--LTIYNANIEDAGIYRCQATDA 82
Score = 29.4 bits (66), Expect = 0.85
Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 14/74 (18%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ-LSTQ 72
+SW R + ++ + +G L ++ D G Y C+ +
Sbjct: 225 AISWFR--NGKLIEENEK-----------YILKGSNTELTVRNIINSDGGPYVCRATNKA 271
Query: 73 PVRSFFVNLNVVVP 86
L V V
Sbjct: 272 GEDEKQAFLQVFVQ 285
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 72.6 bits (178), Expect = 3e-16
Identities = 28/122 (22%), Positives = 41/122 (33%), Gaps = 17/122 (13%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSI 110
+ I A D+G Y CQ + S V L V + +L +P E I+L C
Sbjct: 55 SYFIDAATVNDSGEYRCQ-TNLSTLSDPVQLEVHIG-WLLLQAPRWVFKEEDPIHLRCHS 112
Query: 111 KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170
+ + + + + Y S I +A LKDSG Y C
Sbjct: 113 WKNT-ALHKVTYLQNGKDRKYFHH--------------NSDFHIPKATLKDSGSYFCRGL 157
Query: 171 NA 172
Sbjct: 158 VG 159
Score = 46.4 bits (110), Expect = 8e-07
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 19/102 (18%)
Query: 85 VPTAEI-LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE 143
+P A + L V E ++ L C YSPE + W+H++ +IS
Sbjct: 5 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNST-QWFHNESLIS------------- 50
Query: 144 KGEVTTSYLLIQQAELKDSGKYSCSPSNADV-ASVYVHVLNG 184
S I A + DSG+Y C + + + V + V G
Sbjct: 51 ---SQASSYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIG 89
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 75.8 bits (185), Expect = 3e-16
Identities = 32/185 (17%), Positives = 60/185 (32%), Gaps = 16/185 (8%)
Query: 12 PTRVSWIRHR-------DIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGV 64
+ W + + + G + R S + +T+ + RDAG
Sbjct: 361 KSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGF 420
Query: 65 YECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSI--KYSPEPPAYIFW 122
Y C + + V + ++ + ++ G T+ + C K+S + W
Sbjct: 421 YWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKW 480
Query: 123 YHHDE--VISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA----DVAS 176
+ + S D V ++ S L + D G Y C + A+
Sbjct: 481 NNTGCQALPSQDEGPSKAFVNCDENSRLVS-LTLNLVTRADEGWYWCGVKQGHFYGETAA 539
Query: 177 VYVHV 181
VYV V
Sbjct: 540 VYVAV 544
Score = 66.2 bits (160), Expect = 5e-13
Identities = 34/208 (16%), Positives = 67/208 (32%), Gaps = 20/208 (9%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73
R S + D+ + T+G + R + + +++ I +K DAG Y C +
Sbjct: 254 RQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDG 313
Query: 74 VRSFFVNL-----NVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEV 128
+ V + + GS++ + C Y+ + I ++ E
Sbjct: 314 QLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLC--PYNRKESKSIKYWCLWEG 371
Query: 129 ISYDSSRGGVSV-------------ITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVA 175
V + E+ T +++ Q +D+G Y C + +
Sbjct: 372 AQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLW 431
Query: 176 SVYVHVLNGEYTGWSESLGTQTKYLTFT 203
V + E + G T L T
Sbjct: 432 RTTVEIKIIEGEPNLKVPGNVTAVLGET 459
Score = 63.5 bits (153), Expect = 4e-12
Identities = 38/201 (18%), Positives = 66/201 (32%), Gaps = 18/201 (8%)
Query: 12 PTRVSWIRHR-----DIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYE 66
TR W R I + G + R + + E + ++I + D+G Y+
Sbjct: 32 HTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYK 91
Query: 67 CQLSTQPVR-SFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYH- 124
C L SF V+L V + + VD G T+ + C K +
Sbjct: 92 CGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQI 151
Query: 125 --------HDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---D 173
+ G + + + ++I Q L D+G+Y C + +
Sbjct: 152 GLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSN 211
Query: 174 VASVYVHVLNGEYTGWSESLG 194
+ + VL E E L
Sbjct: 212 KKNADLQVLKPEPELVYEDLR 232
Score = 46.1 bits (108), Expect = 3e-06
Identities = 13/99 (13%), Positives = 27/99 (27%), Gaps = 1/99 (1%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71
W + + + S + F +L + + D G Y C +
Sbjct: 472 SYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSR-LVSLTLNLVTRADEGWYWCGVKQ 530
Query: 72 QPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSI 110
+ V V + GS D+ + + +
Sbjct: 531 GHFYGETAAVYVAVEERKAAGSRDVSLAKADAAPDEKVL 569
Score = 36.1 bits (82), Expect = 0.007
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 13/97 (13%)
Query: 88 AEILGSPDLHVDEGSTINLTCSIKYSPEPPAY-IFWYHHDEVISYDS-----------SR 135
+ I G +++ EG+++++TC + +W +
Sbjct: 2 SPIFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYA 61
Query: 136 GGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172
G + +T E T + I Q DSG+Y C
Sbjct: 62 GRAN-LTNFPENGTFVVNIAQLSQDDSGRYKCGLGIN 97
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 70.3 bits (172), Expect = 5e-16
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 11/79 (13%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRR-------EGDEWTLHIKWAQKRDAGVYE 66
V W ++ + V Y ++F ++H + + D WTL + Q +D G+Y+
Sbjct: 30 VVFWQDQENLVLNEV----YLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQ 85
Query: 67 CQLSTQPVRSFFVNLNVVV 85
C + + +
Sbjct: 86 CIIHHKKPTGMIRIHQMNS 104
Score = 32.5 bits (74), Expect = 0.024
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 11/78 (14%)
Query: 101 GSTINLTCSIKYSPEPPA---YIFWYHHDE--VISYDSSRGGVSVITEKGEVTTSY---- 151
T +L C S +FW + + + + K TS+
Sbjct: 9 NETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDS 68
Query: 152 --LLIQQAELKDSGKYSC 167
L + ++KD G Y C
Sbjct: 69 WTLRLHNLQIKDKGLYQC 86
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 73.6 bits (180), Expect = 6e-16
Identities = 24/181 (13%), Positives = 45/181 (24%), Gaps = 23/181 (12%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ--L 69
++ S I + T ++ + C
Sbjct: 120 VSQYSLIECDGKSLPTDLTFVPNPKAGI------------TIKNVKRAYHRLCVRCAAQR 167
Query: 70 STQPVRSFFVNLNVVVPTAEI----LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH 125
+ S L V I + + +G T + C+IK W
Sbjct: 168 DGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIK-DVSTSVNSMWLKM 226
Query: 126 DEVISYDSSRGGVSVITEKGEVT-TSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ + + S L I A + DSG + C +N + + V
Sbjct: 227 NPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286
Query: 182 L 182
+
Sbjct: 287 V 287
Score = 53.2 bits (127), Expect = 9e-09
Identities = 18/141 (12%), Positives = 30/141 (21%), Gaps = 13/141 (9%)
Query: 44 RREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGST 103
E + + A+ G Y C S S + + V P L L E S
Sbjct: 51 MVENKKNEWIQEKAEATRTGTYTCSNSNGLTSS--IYVFVRDPAKLFLVGLPLFGKEDSD 108
Query: 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSG 163
+ C + D + G +
Sbjct: 109 ALVRCPLTDPQVS--QYSLIECDGKSLPTDLT--FVPNPKAG-----ITIKNVKRAYHRL 159
Query: 164 KYSCSPSNAD--VASVYVHVL 182
C+ + S +
Sbjct: 160 CVRCAAQRDGTWLHSDKFTLK 180
Score = 48.6 bits (115), Expect = 3e-07
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 19/89 (21%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152
+L V+ G T++LTC + W ++
Sbjct: 19 QSELIVEAGDTLSLTCIDPDF------VRWTFKTYFNEMVENKKNE-------------W 59
Query: 153 LIQQAELKDSGKYSCSPSNADVASVYVHV 181
+ ++AE +G Y+CS SN +S+YV V
Sbjct: 60 IQEKAEATRTGTYTCSNSNGLTSSIYVFV 88
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 71.5 bits (175), Expect = 6e-16
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 21/136 (15%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSI 110
+L+I A+ D+G Y+CQ Q S V L V +L + V EG + L C
Sbjct: 52 SLNIVNAKFEDSGEYKCQ-HQQVNESEPVYLEVF-SDWLLLQASAEVVMEGQPLFLRCHG 109
Query: 111 KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170
+ + +Y E + Y + I A ++DSG Y C+
Sbjct: 110 WRNW-DVYKVIYYKDGEALKYWYE--------------NHNISITNATVEDSGTYYCTGK 154
Query: 171 NADV----ASVYVHVL 182
+ + + V+
Sbjct: 155 VWQLDYESEPLNITVI 170
Score = 48.0 bits (114), Expect = 3e-07
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 19/101 (18%)
Query: 84 VVPTAEI-LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVIT 142
V ++ L P + +G + LTC+ + W+H+ + +S
Sbjct: 1 VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFF-EVSSTKWFHNGSLSEETNSS------- 52
Query: 143 EKGEVTTSYLLIQQAELKDSGKYSCSPSNADV-ASVYVHVL 182
L I A+ +DSG+Y C + VY+ V
Sbjct: 53 ---------LNIVNAKFEDSGEYKCQHQQVNESEPVYLEVF 84
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 74.1 bits (182), Expect = 7e-16
Identities = 31/174 (17%), Positives = 56/174 (32%), Gaps = 32/174 (18%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ-LSTQ 72
+ W R D + + + S+ L I Q+ DAG YEC +++
Sbjct: 236 TILWRR-ADGKPIARKARRHKSNG-------------ILEIPNFQQEDAGSYECVAENSR 281
Query: 73 PVRSFFVNLNVVVPTAEILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISY 131
L + D+HV ++ C P+P W + + +
Sbjct: 282 GKNVAKGQLTFYAQ-PNWVQIINDIHVAMEESVFWECKANGRPKP--TYRWLKNGDPLL- 337
Query: 132 DSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
++ ++ L I L D+G Y C N +S + V+
Sbjct: 338 ---------TRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382
Score = 66.8 bits (163), Expect = 3e-13
Identities = 30/147 (20%), Positives = 50/147 (34%), Gaps = 26/147 (17%)
Query: 51 TLHIKWAQKRDAGVYECQ----LSTQPVRSFFVNLNVVV--------PTAEILGSPDLHV 98
L+I +K D G Y C ++ V L + P E+ +
Sbjct: 158 NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPA 217
Query: 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAE 158
++G+T+ L C +P P I W D +R + L I +
Sbjct: 218 EKGTTVKLECFALGNPVP--TILWRRADGKPIARKARR---------HKSNGILEIPNFQ 266
Query: 159 LKDSGKYSCSPSNA---DVASVYVHVL 182
+D+G Y C N+ +VA +
Sbjct: 267 QEDAGSYECVAENSRGKNVAKGQLTFY 293
Score = 66.4 bits (162), Expect = 4e-13
Identities = 27/126 (21%), Positives = 42/126 (33%), Gaps = 13/126 (10%)
Query: 51 TLHI-KWAQKRDAGVYECQLSTQ--PVRSFFVNLNVVVPTAEILGSP-DLHVDEGSTINL 106
+L I + +DAG Y+C + + S L + + V G + L
Sbjct: 63 SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVL 122
Query: 107 TCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166
C W ++ D+ R V E G L I + E D G Y+
Sbjct: 123 LCGPPPHS-GELSYAWIFNEYPSYQDNRR---FVSQETGN-----LYIAKVEKSDVGNYT 173
Query: 167 CSPSNA 172
C +N
Sbjct: 174 CVVTNT 179
Score = 37.9 bits (88), Expect = 0.001
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAE 158
E + L+C +K +P+P +I W + + G S L+ +
Sbjct: 21 SEEKKVKLSCEVKGNPKP--HIRWKLNGTDVDIGMDFR---YSVVDG----SLLINNPNK 71
Query: 159 LKDSGKYSCSPSNA--DVASVYVHV 181
+D+G Y C +N+ + S +
Sbjct: 72 TQDAGTYQCIATNSFGTIVSREAKL 96
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 73.5 bits (180), Expect = 8e-16
Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 19/165 (11%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVVV-----PT 87
+ R I R W+L ++ D G Y C + + L+V+ P
Sbjct: 165 RGEHRIGGIKLRHQQ-WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPI 223
Query: 88 AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVIT----- 142
+ + GS + C + +P +I W H EV G +T
Sbjct: 224 LQAGLPANQTAVLGSDVEFHCKVYSDAQP--HIQWLKHVEVNGSKVGPDGTPYVTVLKTA 281
Query: 143 --EKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ L + +D+G+Y+C N+ S ++ VL
Sbjct: 282 GANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVL 326
Score = 65.8 bits (160), Expect = 5e-13
Identities = 27/176 (15%), Positives = 49/176 (27%), Gaps = 36/176 (20%)
Query: 36 DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTA------- 88
R L + A D+G Y C+ ++ V +
Sbjct: 47 GTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDG 106
Query: 89 -------------------EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVI 129
E + L V +T+ C +P P I W +
Sbjct: 107 EDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTP--SISWLKNGREF 164
Query: 130 SYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ GG+ + ++ L+++ D G Y+C N + + VL
Sbjct: 165 RGEHRIGGIKLRHQQWS-----LVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL 215
Score = 49.6 bits (118), Expect = 2e-07
Identities = 19/98 (19%), Positives = 25/98 (25%), Gaps = 11/98 (11%)
Query: 85 VPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK 144
VP E L G + L+C P W +
Sbjct: 7 VPGPEPGQQEQLVFGSGDAVELSCPPPGG-GPMGPTVWVKDGTGLVPSERV--------- 56
Query: 145 GEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVL 182
V L + A +DSG YSC + V
Sbjct: 57 -LVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVR 93
Score = 36.5 bits (84), Expect = 0.004
Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 3/81 (3%)
Query: 14 RVSWIRHRDI--HILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71
+ W++H ++ + Y + + + + + + L + DAG Y C
Sbjct: 253 HIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGN 312
Query: 72 QP-VRSFFVNLNVVVPTAEIL 91
L V+ E++
Sbjct: 313 SIGFSHHSAWLVVLPAEEELV 333
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 74.0 bits (181), Expect = 1e-15
Identities = 16/125 (12%), Positives = 38/125 (30%), Gaps = 1/125 (0%)
Query: 58 QKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPP 117
+ C + R + + P L + G + + C +
Sbjct: 199 HELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGF 258
Query: 118 AYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASV 177
+ W ++ + + + T + + + + D+G Y+CS S S
Sbjct: 259 G-LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSA 317
Query: 178 YVHVL 182
V ++
Sbjct: 318 LVTIV 322
Score = 70.5 bits (172), Expect = 2e-14
Identities = 26/175 (14%), Positives = 47/175 (26%), Gaps = 24/175 (13%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71
++W + L G+Y S + R + + D G Y C S
Sbjct: 257 GFGLTWEL--ENKALEEGNYFEMSTYSTNRTMIRIL---FAFVSSVARNDTGYYTCSSSK 311
Query: 72 QPVRSFFVNLNVVVPT--AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVI 129
P +S + +V S D +D+ + K P+ W +
Sbjct: 312 HPSQS--ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI--RCTWTFSRKSF 367
Query: 130 SYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD---VASVYVHV 181
+KG + G+Y N D +++
Sbjct: 368 P----------CEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412
Score = 62.8 bits (152), Expect = 7e-12
Identities = 19/158 (12%), Positives = 40/158 (25%), Gaps = 19/158 (12%)
Query: 33 YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVVVPTAEIL 91
S + F + + +++ K G Y + LN+ ++
Sbjct: 361 TFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRK-PQV- 418
Query: 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV---- 147
+ E S +C P P W + + V K
Sbjct: 419 ------LAEASASQASCFSDGYPLPS--WTWKKCSDKSPNCTEEITEGVWNRKANRKVFG 470
Query: 148 -TTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
S + +E C N+ ++ ++
Sbjct: 471 QWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNS 508
Score = 57.4 bits (138), Expect = 5e-10
Identities = 11/131 (8%), Positives = 31/131 (23%), Gaps = 15/131 (11%)
Query: 54 IKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYS 113
+ + Y ++ L + + + VD ++I L +
Sbjct: 19 NNDSSVGKSSSYPMV--SESPEDLGCALRPQSSGT-VYEAAAVEVDVSASITLQVLVDAP 75
Query: 114 PEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN-- 171
W ++ + ++I + +G+Y +
Sbjct: 76 GNIS--CLWVFKHSSLNCQPH-------FDLQNRGVVSMVILKMTETQAGEYLLFIQSEA 126
Query: 172 -ADVASVYVHV 181
V +
Sbjct: 127 TNYTILFTVSI 137
Score = 49.3 bits (117), Expect = 3e-07
Identities = 20/139 (14%), Positives = 35/139 (25%), Gaps = 17/139 (12%)
Query: 35 SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVVVPTAEILGS 93
F +R ++ I + AG Y + ++ + +++ L
Sbjct: 91 CQPHFDLQNRGVV---SMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRR 147
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153
P E L C + PEP + W D V E+ +
Sbjct: 148 PYFRKMENQDA-LVCISESVPEPI--VEWVLCDSQGESCKEESPAVVKKEEKVLHEL--- 201
Query: 154 IQQAELKDSGKYSCSPSNA 172
C N
Sbjct: 202 -------FGTDIRCCARNE 213
Score = 27.0 bits (59), Expect = 5.7
Identities = 6/61 (9%), Positives = 15/61 (24%)
Query: 8 KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67
G +W + D T R + + + ++ + +C
Sbjct: 432 DGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKC 491
Query: 68 Q 68
Sbjct: 492 C 492
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 72.3 bits (177), Expect = 2e-15
Identities = 28/170 (16%), Positives = 46/170 (27%), Gaps = 31/170 (18%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVR-SFFVNLNVVVPTA---- 88
++ R + ++ Q D G Y QL V L V
Sbjct: 150 FEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKE 209
Query: 89 --------------EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSS 134
+ V + L C + +I WY + IS
Sbjct: 210 AEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIK-KETHIVWYKDEREIS-VDE 267
Query: 135 RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ + G T LLI + KD+G Y + D + + +
Sbjct: 268 K----HDFKDGICT---LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310
Score = 65.8 bits (160), Expect = 5e-13
Identities = 16/152 (10%), Positives = 43/152 (28%), Gaps = 20/152 (13%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ-------------LSTQPVRSFFVN 80
R +G++ + K D G+Y C + R ++
Sbjct: 44 EDSPRL--EVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALS 101
Query: 81 LNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSV 140
PT + + + E + + A + + +++ I
Sbjct: 102 HEHKFPTVPVKSELAVEILEKGQVRFWMQAEKL-SGNAKVNYIFNEKEIFEGPKY----K 156
Query: 141 ITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172
+ + +++ + +D G Y+ +
Sbjct: 157 MHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDG 188
Score = 50.4 bits (120), Expect = 8e-08
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 9/81 (11%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152
++ D ++N C P + W DS R + KG + +
Sbjct: 10 VVNVDDDGVISLNFECDKM---TPKSEFSWSKDYVSTE-DSPR---LEVESKG--NKTKM 60
Query: 153 LIQQAELKDSGKYSCSPSNAD 173
+ + D G YSC ++ D
Sbjct: 61 TFKDLGMDDLGIYSCDVTDTD 81
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 72.2 bits (177), Expect = 2e-15
Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 22/139 (15%)
Query: 51 TLHIKWAQKRDAGVYECQL--STQPVRSFFVNLNVVVPTA--EILGSP-DLHVDEGSTIN 105
L I+ +++ D G YEC S S NL V V P + G +N
Sbjct: 165 ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVN 224
Query: 106 LTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165
+TC SP P Y+ W E + T + ++ +++ ++KDS Y
Sbjct: 225 ITCVAVGSPMP--YVKWMQGAEDL------------TPEDDMPVGRNVLELTDVKDSANY 270
Query: 166 SCSPSNA---DVASVYVHV 181
+C ++ A + V
Sbjct: 271 TCVAMSSLGVIEAVAQITV 289
Score = 69.5 bits (170), Expect = 2e-14
Identities = 39/169 (23%), Positives = 63/169 (37%), Gaps = 35/169 (20%)
Query: 35 SDQRFSAIHRREGDEWTLHIKWAQ-KRDAGVYEC-------QLSTQPVRSFFVNLNVVVP 86
+ QRF I E L I+ + RD VYEC +++ L V+
Sbjct: 48 NSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVH------AKLTVLRE 101
Query: 87 TAEILGSP-------DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVS 139
G P V+ T + C+ +P+P I W+ + +S G +
Sbjct: 102 DQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDP--EITWFKDFLPVDPSASNGRIK 159
Query: 140 VITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA------DVASVYVHVL 182
+ + L I+ +E D GKY C +N+ A++YV V
Sbjct: 160 Q------LRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQ 202
Score = 44.4 bits (105), Expect = 7e-06
Identities = 17/92 (18%), Positives = 26/92 (28%), Gaps = 11/92 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D G + C P+P + W + ++ E E + L I
Sbjct: 15 DQIGVSGGVASFVCQATGDPKP--RVTWNKKGKKVNSQRFE-----TIEFDESAGAVLRI 67
Query: 155 QQAELK-DSGKYSCSPSNA---DVASVYVHVL 182
Q D Y C N+ + VL
Sbjct: 68 QPLRTPRDENVYECVAQNSVGEITVHAKLTVL 99
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 70.2 bits (172), Expect = 3e-15
Identities = 33/161 (20%), Positives = 52/161 (32%), Gaps = 24/161 (14%)
Query: 35 SDQRFSAIHRREGDEWTLHI-----KWAQKRDAGVYECQLSTQ--PVRSFFVNLNVVVPT 87
+D+ HR +L + D GVY C S +L V +
Sbjct: 52 TDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILR 111
Query: 88 AEILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE 146
+ +P D+ V G + C P I W + R + G+
Sbjct: 112 DDFRQNPSDVMVAVGEPAVMECQPPRG-HPEPTISWKKDGSPLDDKDER----ITIRGGK 166
Query: 147 VTTSYLLIQQAELKDSGKYSCSPSN------ADVASVYVHV 181
L+I D+GKY C +N ++VA + V
Sbjct: 167 -----LMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLE 202
Score = 44.8 bits (106), Expect = 4e-06
Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 7/92 (7%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVS-VITEKGEVTTSYLL 153
DL V +G L C + P P I WY E + D ++ G + ++
Sbjct: 18 DLIVSKGEPATLNCKAEGRPTP--TIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIV 75
Query: 154 IQQAELKDSGKYSCSPSN----ADVASVYVHV 181
+ D G Y C N A + V
Sbjct: 76 HGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 69.7 bits (170), Expect = 4e-15
Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 7/135 (5%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSI 110
K G Y C +P+ + N+ + P H++EG T L C
Sbjct: 50 KTEFKVDSDDQWGEYSCVFLPEPMGT--ANIQLHGPPRVKAVKSSEHINEGETAMLVCKS 107
Query: 111 KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELK-DSGKYSCSP 169
+ P P WY + G S S L I+ ++ D G+Y C+
Sbjct: 108 ESVP-PVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNG 166
Query: 170 SNA---DVASVYVHV 181
+++ D A + + V
Sbjct: 167 TSSKGSDQAIITLRV 181
Score = 54.3 bits (130), Expect = 2e-09
Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 13/84 (15%)
Query: 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQA 157
D GS I LTCS+ S W V+ D+ G +
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-------------QKTEFKVD 56
Query: 158 ELKDSGKYSCSPSNADVASVYVHV 181
G+YSC + + + +
Sbjct: 57 SDDQWGEYSCVFLPEPMGTANIQL 80
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 69.9 bits (171), Expect = 4e-15
Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 40/160 (25%)
Query: 46 EGDEWTLHIKWAQKRDAGVYECQLSTQ--PVRSFFVNLNVVVP--------------TAE 89
G+ L +DAG Y C+++ S + L+V +
Sbjct: 61 NGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQ 120
Query: 90 ILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT 148
I P + GST+ L C SP P + W+ ++ +++++ +
Sbjct: 121 ICVEPTSQKLMPGSTLVLQCVAVGSPIP--HYQWFKNELPLTHETKK------------- 165
Query: 149 TSYLLIQQAELKDSGKYSCSPSN------ADVASVYVHVL 182
++ +L+ G Y C N + + + L
Sbjct: 166 --LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL 203
Score = 49.9 bits (119), Expect = 8e-08
Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 23/131 (17%)
Query: 79 VNLNVVVPTA-EILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRG 136
+ + +VP +I +P V G + L C P W+ ++ I
Sbjct: 9 HHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFV--QYQWFKMNKEIPNG---- 62
Query: 137 GVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN----ADVASVYVHVLNGEYTGWSES 192
TS L+ +KD+G Y C +N + V + +
Sbjct: 63 -----------NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSV 111
Query: 193 LGTQTKYLTFT 203
G L
Sbjct: 112 DGVSESKLQIC 122
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 71.8 bits (176), Expect = 5e-15
Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 15/137 (10%)
Query: 51 TLHIKWAQKRDAGVYECQ-LSTQPVRSFFVNLNVVVPTAEILGSP-DLHVDEGSTINLTC 108
L I + D+G Y C + +++ V L P +L + G L C
Sbjct: 276 ALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAA-PYWLDEPKNLILAPGEDGRLVC 334
Query: 109 SIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168
+P+P + W + E + EV ++ + ++ Y C+
Sbjct: 335 RANGNPKPT--VQWMVNGEPLQSAPPNPNR-------EVAGDTIIFRDTQISSRAVYQCN 385
Query: 169 PSN---ADVASVYVHVL 182
SN +A+ +V VL
Sbjct: 386 TSNEHGYLLANAFVSVL 402
Score = 61.8 bits (150), Expect = 1e-11
Identities = 38/193 (19%), Positives = 55/193 (28%), Gaps = 42/193 (21%)
Query: 8 KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDA-GVYE 66
GL + W+ I T D+R S H G L+ +D Y
Sbjct: 142 PGLPSPVIFWMSSSMEPI--------TQDKRVSQGH--NG---DLYFSNVMLQDMQTDYS 188
Query: 67 C----QLSTQPVRSFFVNLNVVVPTAEILGSP----------DLHVDEGSTINLTCSIKY 112
C + + L V+ +P V G + L C
Sbjct: 189 CNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASG 248
Query: 113 SPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172
P P I WY + D ++ L I +DSG+Y C SN
Sbjct: 249 VPTP--DIAWYKKGGDLPSDKAK-----FENFN----KALRITNVSEEDSGEYFCLASNK 297
Query: 173 ---DVASVYVHVL 182
++ V V
Sbjct: 298 MGSIRHTISVRVK 310
Score = 53.7 bits (129), Expect = 6e-09
Identities = 24/120 (20%), Positives = 36/120 (30%), Gaps = 13/120 (10%)
Query: 57 AQKRDAGVYECQLSTQ--PVRSFFVNLNVVVPTAEILGSPD-LHVDEGSTINLTCSIKYS 113
+ G Y+C + S + L V + D + V EG+ + L C+
Sbjct: 84 RPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPG 143
Query: 114 PEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDS-GKYSCSPSNA 172
P IFW R G+ L L+D YSC+
Sbjct: 144 -LPSPVIFWMSSSMEPITQDKR---VSQGHNGD-----LYFSNVMLQDMQTDYSCNARFH 194
Score = 44.1 bits (104), Expect = 1e-05
Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 7/95 (7%)
Query: 79 VNLNVVVPTAEILGSP--DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRG 136
+ + P I D VD I + C K +P P W + + +
Sbjct: 9 IQNELTQP-PTITKQSAKDHIVDPRDNILIECEAKGNPAP--SFHWTRNSRFFN-IAKDP 64
Query: 137 GVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
VS+ G + + G+Y C N
Sbjct: 65 RVSMRRRSGTL-VIDFRSGGRPEEYEGEYQCFARN 98
Score = 29.8 bits (67), Expect = 0.56
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 43 HRREGDEWTLHIKWAQKRDAGVYECQ 68
RE T+ + Q VY+C
Sbjct: 360 PNREVAGDTIIFRDTQISSRAVYQCN 385
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 68.4 bits (167), Expect = 9e-15
Identities = 22/162 (13%), Positives = 44/162 (27%), Gaps = 26/162 (16%)
Query: 12 PTRVSWIRHRDIHILT--VGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69
R++W+ + IL + F + L I K D G Y ++
Sbjct: 29 YQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRM 88
Query: 70 STQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVI 129
+ + + + V + P ++ E S LTC + + + Y E +
Sbjct: 89 LHETEDQWKITMEVYEM----VSKPMIYW-ECSNATLTCEVLEGTDV--ELKLYQGKEHL 141
Query: 130 SYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
+ + + C N
Sbjct: 142 R-----------------SLRQKTMSYQWTNLRAPFKCKAVN 166
Score = 41.8 bits (98), Expect = 4e-05
Identities = 17/99 (17%), Positives = 28/99 (28%), Gaps = 10/99 (10%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE---KGEVTT 149
P+++ GS + LT + W H + G + E K V
Sbjct: 6 VPNVNAITGSNVTLTILKH-PLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL 64
Query: 150 SY----LLIQQAELKDSGKYSCSPSNADV--ASVYVHVL 182
L I +D G Y + + + V
Sbjct: 65 DKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVY 103
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 68.3 bits (167), Expect = 1e-14
Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 18/140 (12%)
Query: 51 TLHIKWAQKRDAGVYECQ---LSTQPVRSFFVNLNVVVPTA--EILGSPDLHVDEGSTIN 105
L I K D G+Y C+ + + + + V VP A S + + G +
Sbjct: 58 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMT 117
Query: 106 LTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165
+C SPEP I W+ + ++I + E L ++ D G Y
Sbjct: 118 FSCRASGSPEP--AISWFRNGKLIE---ENEKYILKGSNTE-----LTVRNIINSDGGPY 167
Query: 166 SCSPSNA---DVASVYVHVL 182
C +N D ++ V
Sbjct: 168 VCRATNKAGEDEKQAFLQVF 187
Score = 45.9 bits (109), Expect = 1e-06
Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 9/77 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+G + C + SP P + W +H+E ++ S + L I
Sbjct: 11 PQEFKQGEDAEVVCRVSSSPAP--AVSWLYHNEEVTTISD--NRFAMLANNN-----LQI 61
Query: 155 QQAELKDSGKYSCSPSN 171
D G Y C
Sbjct: 62 LNINKSDEGIYRCEGRV 78
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 68.7 bits (168), Expect = 1e-14
Identities = 34/164 (20%), Positives = 58/164 (35%), Gaps = 28/164 (17%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQK-RDAGVYECQLSTQ--PVRSFFVNLNVVVPTAEI 90
+ R++ + + G L I+ + RD YEC S L +
Sbjct: 49 GTQSRYTVLEQ-PGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTP 107
Query: 91 LGSP-------DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE 143
G P ++ G T+ +TC +P P I+W + + + R +
Sbjct: 108 AGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTP--NIYWIKNQTKVDMSNPR----YSLK 161
Query: 144 KGEVTTSYLLIQQAELKDSGKYSCSPSN------ADVASVYVHV 181
G L I+ + +D GKY C N + ++YV V
Sbjct: 162 DGF-----LQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV 200
Score = 44.4 bits (105), Expect = 5e-06
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 11/93 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+ V G + C+ + P P I W + + +S SR +V+ + G ++ L I
Sbjct: 15 NQGVRVGGVASFYCAARGDPPP--SIVWRKNGKKVSGTQSR--YTVLEQPGGISI--LRI 68
Query: 155 QQAELK-DSGKYSCSPSN----ADVASVYVHVL 182
+ D Y C N A A + +
Sbjct: 69 EPVRAGRDDAPYECVAENGVGDAVSADATLTIY 101
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 70.4 bits (172), Expect = 2e-14
Identities = 36/172 (20%), Positives = 53/172 (30%), Gaps = 31/172 (18%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ-LSTQ 72
W + + T Q R + TL IK A D+G Y C ++
Sbjct: 243 SFRWYKFIE---------GTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSV 293
Query: 73 PVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYD 132
S L V P + + P VD G TC +P + W + I +
Sbjct: 294 GGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKT--VSWMKDGKAIGHS 351
Query: 133 SSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
S L I+ + +D G Y C N AS + +
Sbjct: 352 ESV----------------LRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 69.6 bits (170), Expect = 3e-14
Identities = 39/189 (20%), Positives = 68/189 (35%), Gaps = 30/189 (15%)
Query: 9 GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDA-GVYEC 67
VSW + + D ++ + G LHI+ D Y+C
Sbjct: 132 ADFVEVVSWHTDEEENYFPGA----EYDGKYLVLP--SG---ELHIREVGPEDGYKSYQC 182
Query: 68 Q----LSTQPVRSFFVNLNVV-------VPTAEILGSPDLHVDEGSTINLTCSIKYSPEP 116
+ L+ + S V+ P L L + TI+L C + P P
Sbjct: 183 RTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAP 242
Query: 117 PAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---D 173
WY E ++R V+ ++ + + L+I+ A ++DSGKY C +N+ +
Sbjct: 243 --SFRWYKFIE----GTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGE 296
Query: 174 VASVYVHVL 182
+ V
Sbjct: 297 SVETVLTVT 305
Score = 60.7 bits (147), Expect = 3e-11
Identities = 30/174 (17%), Positives = 55/174 (31%), Gaps = 26/174 (14%)
Query: 8 KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIK------WAQKRD 61
G + WIR + V S +G L + Q+
Sbjct: 29 SGNPMPEIIWIRSDGTAVGDVPGLRQISS---------DG---KLVFPPFRAEDYRQEVH 76
Query: 62 AGVYECQLSTQ--PVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSI-KYSPEPPA 118
A VY C Q + S V++ VV HV G++ + C I + +
Sbjct: 77 AQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVE 136
Query: 119 YIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDS-GKYSCSPSN 171
+ W+ +E + + + + + L I++ +D Y C +
Sbjct: 137 VVSWHTDEEENYFPGAEYDGKYLV----LPSGELHIREVGPEDGYKSYQCRTKH 186
Score = 39.5 bits (92), Expect = 4e-04
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 7/92 (7%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT-TSY 151
+ + + + C +P P I W D D G+ I+ G++ +
Sbjct: 11 TNRIDFSNSTGAEIECKASGNPMP--EIIWIRSDGTAVGDVP--GLRQISSDGKLVFPPF 66
Query: 152 LLIQQAELKDSGKYSCSPSNA--DVASVYVHV 181
+ + Y+C N + S VHV
Sbjct: 67 RAEDYRQEVHAQVYACLARNQFGSIISRDVHV 98
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 69.9 bits (171), Expect = 2e-14
Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 16/136 (11%)
Query: 51 TLHIKWAQKRDAGVYECQ-LSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCS 109
LHI+ D G YEC+ + + ++ + + + D D GS + +C
Sbjct: 258 LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCV 317
Query: 110 IKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169
P P + W + ++ + EV+ L + L+DSG Y C
Sbjct: 318 ASGKPRP--AVRWLRDGQPLASQNRI----------EVSGGELRFSKLVLEDSGMYQCVA 365
Query: 170 SNA---DVASVYVHVL 182
N AS + V
Sbjct: 366 ENKHGTVYASAELTVQ 381
Score = 65.3 bits (159), Expect = 9e-13
Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 10/124 (8%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQ--PVRSFFVNLNVVVPTAEILGSPD-LHVDEGSTINLT 107
+ + +DAG Y+C + V S +L D + + EG + T
Sbjct: 63 LVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFT 122
Query: 108 CSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167
CS P W +E ++ + G V G L I + E D G YSC
Sbjct: 123 CSPPPHY-PALSYRWL-LNEFPNFIPADGRRFVSQTTGN-----LYIAKTEASDLGNYSC 175
Query: 168 SPSN 171
++
Sbjct: 176 FATS 179
Score = 63.0 bits (153), Expect = 6e-12
Identities = 32/149 (21%), Positives = 47/149 (31%), Gaps = 32/149 (21%)
Query: 51 TLHIKWAQKRDAGVYECQ------LSTQPVRSFFVNLNVVV-------PTAEILGSPDLH 97
L+I + D G Y C T+ V S F L++ P+ + D +
Sbjct: 159 NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTY 218
Query: 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHD-EVISYDSSRGGVSVITEKGEVTTSYLLIQQ 156
G + L C +P P I W D S S + L IQ
Sbjct: 219 ALTGQMVTLECFAFGNPVP--QIKWRKLDGSQTSKWLSSEPL-------------LHIQN 263
Query: 157 AELKDSGKYSCSPSNA---DVASVYVHVL 182
+ +D G Y C N D + +
Sbjct: 264 VDFEDEGTYECEAENIKGRDTYQGRIIIH 292
Score = 33.7 bits (77), Expect = 0.035
Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 12/81 (14%)
Query: 94 PDLHVDEGS---TINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTS 150
EGS + LTC + PPA W + + G
Sbjct: 12 AHTLFPEGSAEEKVTLTCRAR--ANPPATYRWKMNGTELKMGPDSR---YRLVAG----D 62
Query: 151 YLLIQQAELKDSGKYSCSPSN 171
++ + KD+G Y C +N
Sbjct: 63 LVISNPVKAKDAGSYQCVATN 83
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 69.2 bits (169), Expect = 4e-14
Identities = 31/155 (20%), Positives = 51/155 (32%), Gaps = 21/155 (13%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ--PVRSFFVNLNVVVPTAEIL 91
+ L K D GVY C++ + + L VV +
Sbjct: 254 NGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSA-PKYE 312
Query: 92 GSP--DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTT 149
P + V +G + + C + P P + W H+ + +S + VT
Sbjct: 313 QKPEKVIVVKQGQDVTIPCKVTGLPAPN--VVWSHNAKPLSGG-----------RATVTD 359
Query: 150 SYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
S L+I+ + D G Y C +N V V
Sbjct: 360 SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 69.2 bits (169), Expect = 4e-14
Identities = 27/191 (14%), Positives = 57/191 (29%), Gaps = 26/191 (13%)
Query: 8 KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67
++W + + + D+R +A +G+ + + D Y C
Sbjct: 126 NAYPKPLITW--KKRLSGADPNADVTDFDRRITAGP--DGNLYFTIVTKEDVSDIYKYVC 181
Query: 68 Q----LSTQPVRSFFVNLNVVV--------PTAEILGSPDLHVDEGSTINLTCSIKYSPE 115
+ V + V S D+ G + C +P
Sbjct: 182 TAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPM 241
Query: 116 PPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN---- 171
Y ++ + + ++ + IT + LL + +D G Y+C N
Sbjct: 242 G--YPNYFKNGKDVNGNPED----RITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGK 295
Query: 172 ADVASVYVHVL 182
S+ + V+
Sbjct: 296 PQKHSLKLTVV 306
Score = 65.7 bits (160), Expect = 7e-13
Identities = 28/166 (16%), Positives = 51/166 (30%), Gaps = 20/166 (12%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71
+ SW + + +A+ + EG +L Q D G Y+C T
Sbjct: 36 GVKYSW-KKDGKSY--------NWQEHNAALRKDEG---SLVFLRPQASDEGHYQCFAET 83
Query: 72 Q--PVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVI 129
S ++ A + + EG L C + + P I W
Sbjct: 84 PAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAY-PKPLITWKKRLSGA 142
Query: 130 SYDSSRGGVS---VITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172
++ G + + + + ++ D KY C+ NA
Sbjct: 143 DPNADVTDFDRRITAGPDGNLYFTI--VTKEDVSDIYKYVCTAKNA 186
Score = 44.9 bits (106), Expect = 8e-06
Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153
++ E + L C I+ + + Y W + + ++ ++G L+
Sbjct: 14 AEVLFRENNPTVLECIIEGNDQGVKYS-WKKDGKSY--NWQEHNAALRKDEGS-----LV 65
Query: 154 IQQAELKDSGKYSCSPSN 171
+ + D G Y C
Sbjct: 66 FLRPQASDEGHYQCFAET 83
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 68.3 bits (166), Expect = 6e-14
Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 17/155 (10%)
Query: 43 HRREGDEWTLHIKWAQKRDAGVYECQLST-------QPVRSFFVNLNVVVPTAE---ILG 92
+ L I + D+G Y+C + V S L V+ ++
Sbjct: 175 TKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLIL 234
Query: 93 SPDLHVDEGSTINLTCSIKYSPEP--PAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTS 150
P ++V G N+TC+ + I W + I G S++T G +T +
Sbjct: 235 DPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWII-GLDFGVYSILTSSGGITEA 293
Query: 151 YLLIQQAELKDSGK-YSCSPSNA---DVASVYVHV 181
L + + G Y+C N + V +
Sbjct: 294 TLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328
Score = 64.5 bits (156), Expect = 1e-12
Identities = 36/170 (21%), Positives = 58/170 (34%), Gaps = 15/170 (8%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAG-VYECQL- 69
P S + HR V ++ R R + L I D+ Y C +
Sbjct: 53 PIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNG--DLWIANYTSNDSHRRYLCTVT 110
Query: 70 -STQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEV 128
V ++ P + I + +L + I+L C I + I WY +++
Sbjct: 111 TKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGIL-YAKHYNNITWYKNNQE 169
Query: 129 ISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVY 178
+ D K + L+I EL+DSG+Y C DV
Sbjct: 170 LIIDG---------TKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKN 210
Score = 45.2 bits (106), Expect = 5e-06
Identities = 15/108 (13%), Positives = 31/108 (28%), Gaps = 9/108 (8%)
Query: 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVS 139
+ + P+ G+ + G + C ++D+ + + G +
Sbjct: 23 DSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLS----HRYNDKDNVVNWEKIGKT 78
Query: 140 VITEKGEVTTSYLLIQQAELKDSG-KYSCSPSN----ADVASVYVHVL 182
V L I DS +Y C+ + V H+
Sbjct: 79 RRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIR 126
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 66.6 bits (162), Expect = 8e-14
Identities = 36/170 (21%), Positives = 52/170 (30%), Gaps = 14/170 (8%)
Query: 10 LLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHR--------REGDEWTLHIKWAQKRD 61
L V W I V Q S R G+ L I + +D
Sbjct: 33 LAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGN-AALQITDVKLQD 91
Query: 62 AGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIF 121
AGVY C +S + + V P +I + S LTC + P+ +
Sbjct: 92 AGVYRCMISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKA--EVI 149
Query: 122 WYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
W D + + S EK TS L I + + C+
Sbjct: 150 WTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTT---TNEIFYCTFRR 196
Score = 43.1 bits (101), Expect = 2e-05
Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 25/116 (21%)
Query: 83 VVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPA-----YIFWYHHDE-VISYDSS-- 134
V VP + V+ GS + + C + E ++W D+ +I +
Sbjct: 4 VTVPKDLYV------VEYGSNMTIECK--FPVEKQLDLAALIVYWEMEDKNIIQFVHGEE 55
Query: 135 ---------RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHV 181
R ++ ++ + + L I +L+D+G Y C S + V
Sbjct: 56 DLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITV 111
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 66.6 bits (162), Expect = 9e-14
Identities = 31/167 (18%), Positives = 51/167 (30%), Gaps = 15/167 (8%)
Query: 15 VSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGD-------EWTLHIKWAQKRDAGVYEC 67
++W RH + + V T S + +L + + D G Y C
Sbjct: 36 LTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTC 95
Query: 68 QLSTQP--VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH 125
T P RS + L V+ + + C PPA I W+
Sbjct: 96 LFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGR-PPAQITWHSD 154
Query: 126 DEVISYDSSRGGVSVITEKGEVT-TSYLLIQQAELKDSGKYSCSPSN 171
+ S G VT TS ++ + D + +C +
Sbjct: 155 LGGMPQTSQ----VPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEH 197
Score = 37.8 bits (87), Expect = 0.001
Identities = 16/113 (14%), Positives = 40/113 (35%), Gaps = 19/113 (16%)
Query: 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAY---IFWYHHDE---VISYDSSRGGVSVIT 142
+ + G ++ L C ++ + + W H E + + ++G +
Sbjct: 2 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 61
Query: 143 EKGEVTTSY---------LLIQQAELKDSGKYSCS----PSNADVASVYVHVL 182
++ E + L + ++D G Y+C P + +++ VL
Sbjct: 62 KRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVL 114
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 63.9 bits (155), Expect = 9e-14
Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 9/106 (8%)
Query: 84 VVPTAEILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVIT 142
P +I P GS ++ TCS S + P W +E + +
Sbjct: 7 DFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRA 66
Query: 143 EKGEVT--TSYLLIQQAELKDSGKYSCSPSN------ADVASVYVH 180
+ GE+ T+ L ++ E G Y C SN + A + ++
Sbjct: 67 QGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112
Score = 28.1 bits (62), Expect = 0.92
Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 5/74 (6%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71
P +W D L + R E L ++ + G Y+C +S
Sbjct: 41 PMTFAWXX--DNEALQDAEMENYAHLRAQGGELMEYTT-ILRLRNVEFTSEGXYQCVISN 97
Query: 72 Q--PVRSFFVNLNV 83
S L +
Sbjct: 98 HFGSSYSVXAXLTI 111
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 65.7 bits (160), Expect = 1e-13
Identities = 26/169 (15%), Positives = 43/169 (25%), Gaps = 29/169 (17%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS-------------TQPVRSFFVN 80
++ R + ++ Q D G Y QL +
Sbjct: 45 FEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKE 104
Query: 81 LNVVVPTAEILGSP------DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSS 134
P V + L C + +I WY + IS D
Sbjct: 105 AEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIK-KETHIVWYKDEREISVDEK 163
Query: 135 RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN-ADVASVYVHVL 182
+ G T LLI + KD+G Y + + ++
Sbjct: 164 H-----DFKDGICT---LLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 204
Score = 48.4 bits (115), Expect = 2e-07
Identities = 7/79 (8%), Positives = 25/79 (31%), Gaps = 7/79 (8%)
Query: 95 DLHVDEGSTINLT-CSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153
+ + E + + K S + + +++ I + +
Sbjct: 11 AVEILEKGQVRFWMQAEKLSGNAK--VNYIFNEKEIFEGPKY----KMHIDRNTGIIEMF 64
Query: 154 IQQAELKDSGKYSCSPSNA 172
+++ + +D G Y+ +
Sbjct: 65 MEKLQDEDEGTYTFQLQDG 83
Score = 37.2 bits (86), Expect = 0.002
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 13/59 (22%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70
T + W ++D ++V H + TL I K+DAG+YE L
Sbjct: 146 ETHIVW--YKDEREISVDEK-----------HDFKDGICTLLITEFSKKDAGIYEVILK 191
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 63.1 bits (154), Expect = 2e-13
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 89 EILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147
+I P D+ +DEG + + C+ P P + W I S G I ++
Sbjct: 7 KIEALPSDISIDEGKVLTVACAFTGEPTP--EVTWSCGGRKIH--SQEQGRFHIENTDDL 62
Query: 148 TTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
TT L+I + +D G Y+ S N D A+V +H+
Sbjct: 63 TT--LIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 31.5 bits (72), Expect = 0.058
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 46 EGDEWTLHIKWAQKRDAGVYECQLS 70
D TL I QK+D G+Y L
Sbjct: 59 TDDLTTLIIMDVQKQDGGLYTLSLG 83
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 65.7 bits (160), Expect = 2e-13
Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 19/141 (13%)
Query: 54 IKWAQKRDAGVYECQLSTQP--VRSFFVNLNVVVPTAEILGSP-DLHVDEGSTINLTCSI 110
++ +++D G Y C + S +L + V + P D V +G T L C
Sbjct: 73 MQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECG- 131
Query: 111 KYSPEPPAYIFWYHHDEVISYDSSRGGVS----VITEKGEVTTSYLLIQQAELKDSGKYS 166
P + W + + + I + G LLI E D G Y
Sbjct: 132 PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGN-----LLISNVEPIDEGNYK 186
Query: 167 CSPSN------ADVASVYVHV 181
C N + A + V V
Sbjct: 187 CIAQNLVGTRESSYAKLIVQV 207
Score = 45.2 bits (107), Expect = 3e-06
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 8/92 (8%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
DL V + L C ++ PEP I W+ E +S + + + Y +
Sbjct: 18 DLVVKKNEPATLNCKVEGKPEP--TIEWFKDGEPVSTNEKKSHRVQFKDGALF--FYRTM 73
Query: 155 QQAELKDSGKYSCSPSN----ADVASVYVHVL 182
Q + +D G+Y C N A + +
Sbjct: 74 QGKKEQDGGEYWCVAKNRVGQAVSRHASLQIA 105
Score = 34.5 bits (79), Expect = 0.015
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 8/77 (10%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ- 72
+ WI+ + + + ++ + R + D L I + D G Y+C
Sbjct: 140 TLIWIKDGVP-LDDLKAMSFGASSRVRIV-----DGGNLLISNVEPIDEGNYKCIAQNLV 193
Query: 73 -PVRSFFVNLNVVVPTA 88
S + L V V A
Sbjct: 194 GTRESSYAKLIVQVKAA 210
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 66.1 bits (160), Expect = 2e-13
Identities = 40/212 (18%), Positives = 70/212 (33%), Gaps = 37/212 (17%)
Query: 7 LKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREG-------DEWTLHIKWAQK 59
LKG P R + + + + G SD + G TL +
Sbjct: 40 LKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHP 99
Query: 60 RDAGVYECQLSTQPVRSFF------VNLNVVV----PTAEILGSPDLHVDEGSTINLTCS 109
+D G Y CQ++ +R+ F V L V + + + VDEG+ I +TC
Sbjct: 100 QDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCP 159
Query: 110 IKYSPEPPAYIFWY------------HHDEVISYDSSRGGVSVITEKGEVTTSY---LLI 154
+ WY + + + + G + S L+I
Sbjct: 160 CTDCANAN--VTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVI 217
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVLN 183
+ A++ D+G+ C + A +L
Sbjct: 218 RAAKITDAGRVWCELATGQGELDADRSSTILK 249
Score = 43.0 bits (100), Expect = 2e-05
Identities = 16/103 (15%), Positives = 27/103 (26%), Gaps = 24/103 (23%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPE-PPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY 151
++ V G T+ L CS + + + P I W G +G
Sbjct: 9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVES 68
Query: 152 -----------------------LLIQQAELKDSGKYSCSPSN 171
L + +D G+Y C +
Sbjct: 69 DSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQ 111
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 64.9 bits (158), Expect = 3e-13
Identities = 31/145 (21%), Positives = 48/145 (33%), Gaps = 26/145 (17%)
Query: 51 TLHIKWAQKRDAGVYECQ-LSTQPVRSFFVNLNVVVPTAEILGSP----------DLHVD 99
L+I + D G Y C S +S F ++P E P D++
Sbjct: 67 NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYAL 126
Query: 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159
G + L C +P P I W E + + + + L I +L
Sbjct: 127 MGQNVTLECFALGNPVP--DIRWRKVLEPMPSTAEI----------STSGAVLKIFNIQL 174
Query: 160 KDSGKYSCSPSNA---DVASVYVHV 181
+D G Y C N D ++V
Sbjct: 175 EDEGIYECEAENIRGKDKHQARIYV 199
Score = 54.5 bits (131), Expect = 2e-09
Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 6/79 (7%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153
P++ V EG + L C Y W +E + + V G L
Sbjct: 16 PEVRVKEGKGMVLLCDPPYHFPDDLSYRWL-LNEFPVFITMDKRRFVSQTNGN-----LY 69
Query: 154 IQQAELKDSGKYSCSPSNA 172
I E D G YSC S+
Sbjct: 70 IANVEASDKGNYSCFVSSP 88
Score = 28.3 bits (63), Expect = 1.3
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 15/54 (27%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67
+ W + + + + TS L I Q D G+YEC
Sbjct: 144 DIRW--RKVLEPMPSTAEISTSGA-------------VLKIFNIQLEDEGIYEC 182
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 66.3 bits (161), Expect = 3e-13
Identities = 27/160 (16%), Positives = 51/160 (31%), Gaps = 23/160 (14%)
Query: 43 HRREGDEWTLHIKWAQKRDAGVYECQLS-----TQPVRSFFVNLNVVVPTAE----ILGS 93
G + L + ++ G Y C S Q + + + I+
Sbjct: 155 IHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSP 214
Query: 94 PD--LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVIT------EKG 145
+ + VD GS I L C++ +W + VI D G + ++
Sbjct: 215 ANETMEVDLGSQIQLICNVTGQLSD--IAYWKWNGSVIDEDDPVLGEDYYSVENPANKRR 272
Query: 146 EVTTSYLLIQQAELKD-SGKYSCSPSNA---DVASVYVHV 181
+ L I + E + ++C N D A + +
Sbjct: 273 STLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 65.5 bits (159), Expect = 5e-13
Identities = 26/176 (14%), Positives = 51/176 (28%), Gaps = 29/176 (16%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS- 70
++W + S T S ++ S IH+ + L A+ D+G Y C +
Sbjct: 35 KGTITWYK--------DDSKTPVSTEQASRIHQHKE---KLWFVPAKVEDSGHYYCVVRN 83
Query: 71 TQPVRSFFVNLNVVVPTAEILGSPDL----HVDEGSTINLTCSIKYSPE----PPAYIFW 122
+ ++ V + + + L C + + W
Sbjct: 84 SSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQW 143
Query: 123 YHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVY 178
Y + + D+ L++ K G Y+C S + Y
Sbjct: 144 YKDCKPLLLDNIH---------FSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQY 190
Score = 45.1 bits (106), Expect = 5e-06
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 10/91 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
L C + + I WY D + + S I + E L
Sbjct: 14 ILVSSANEIDVRPCPLNPNEHKGT-ITWYKDDSKTPVSTEQA--SRIHQHKEK----LWF 66
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVL 182
A+++DSG Y C N+ + +
Sbjct: 67 VPAKVEDSGHYYCVVRNSSYCLRIKISAKFV 97
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 62.6 bits (152), Expect = 4e-13
Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 6/107 (5%)
Query: 79 VNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGV 138
L V P I + H G + C I+ +P PP I W + V+ +S
Sbjct: 7 GTLTVNGP-PIISSTQTQHALHGEKGQIKCFIRSTP-PPDRIAWSWKENVLESGTSGRYT 64
Query: 139 SVITEKGEVTTSYLLIQQAELKD-SGKYSCSPSNA---DVASVYVHV 181
E S L I D Y+C+ N+ D + +
Sbjct: 65 VETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111
Score = 29.5 bits (66), Expect = 0.36
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRD-AGVYECQ 68
P R++W ++ + + S YT I EG TL I + D +Y C
Sbjct: 43 PDRIAW-SWKENVLESGTSGRYT----VETISTEEGVISTLTISNIVRADFQTIYNCT 95
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 66.2 bits (161), Expect = 5e-13
Identities = 16/125 (12%), Positives = 37/125 (29%), Gaps = 1/125 (0%)
Query: 58 QKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPP 117
+ C + R + + P L + G + + C
Sbjct: 199 HELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAV-HVNHG 257
Query: 118 AYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASV 177
+ W ++ + + + T + + + + D+G Y+CS S S
Sbjct: 258 FGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSA 317
Query: 178 YVHVL 182
V ++
Sbjct: 318 LVTIV 322
Score = 63.5 bits (154), Expect = 3e-12
Identities = 24/177 (13%), Positives = 45/177 (25%), Gaps = 20/177 (11%)
Query: 8 KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67
++W + L G+Y S + R + + D G Y C
Sbjct: 253 HVNHGFGLTWEL--ENKALEEGNYFEMSTYSTNRTMIRIL---FAFVSSVARNDTGYYTC 307
Query: 68 QLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE 127
S P +S V + S D +D+ + ++ P W +
Sbjct: 308 SSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSV--RFKAYPQIRCTWTFSRK 365
Query: 128 VISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+KG + G+Y N +++
Sbjct: 366 SFP----------CEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412
Score = 57.0 bits (137), Expect = 7e-10
Identities = 12/130 (9%), Positives = 31/130 (23%), Gaps = 15/130 (11%)
Query: 57 AQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEP 116
+ + Y ++ L + + + VD ++I L +
Sbjct: 22 SSVGKSSSYPMV--SESPEDLGCALRPQSSGT-VYEAAAVEVDVSASITLQVLVDAPGNI 78
Query: 117 PAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---D 173
W ++ ++I + +G+Y +
Sbjct: 79 --SCLWVFKHSSLNCQPHFDLQ-------NRGVVSMVILKMTETQAGEYLLFIQSEATNY 129
Query: 174 VASVYVHVLN 183
V + N
Sbjct: 130 TILFTVSIRN 139
Score = 52.0 bits (124), Expect = 3e-08
Identities = 22/147 (14%), Positives = 42/147 (28%), Gaps = 19/147 (12%)
Query: 42 IHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVR-SFFVNLNVVVPTAEILGSPDLHVDE 100
+ ++ I + AG Y + ++ + +++ L P E
Sbjct: 95 FDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKME 154
Query: 101 GSTINLTCSIKYSPEPPAYIFWYHHD-EVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159
L C + PEP + W D + S V E ++ +
Sbjct: 155 NQDA-LVCISESVPEPI--VEWVLCDSQGESCKEESPAVVKKEE--------KVLHELFG 203
Query: 160 KDSGKYSCSPSNA---DVASVYVHVLN 183
D C N + ++ LN
Sbjct: 204 TD---IRCCARNELGRECTRLFTIDLN 227
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 65.9 bits (160), Expect = 5e-13
Identities = 31/182 (17%), Positives = 63/182 (34%), Gaps = 31/182 (17%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS-TQ 72
++W + S + + + ++G L + A + D+G Y C
Sbjct: 56 NLTWHK--------NDSARTVPGEEETRMWAQDG---ALWLLPALQEDSGTYVCTTRNAS 104
Query: 73 PVRSFFVNLNVVVPTAEIL--GSPDLHVDEGSTINLTCSI---KYSPEPPAYIFWYHHDE 127
+ L V T L S + ++ L C + I WY
Sbjct: 105 YCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSL 164
Query: 128 VISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD-------VASVYVH 180
++ D+ + ++ +G T++LL+ L+D+G Y C + A S+ +
Sbjct: 165 LLDKDNEK----FLSVRG---TTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELR 217
Query: 181 VL 182
+
Sbjct: 218 IK 219
Score = 62.8 bits (152), Expect = 5e-12
Identities = 26/151 (17%), Positives = 47/151 (31%), Gaps = 20/151 (13%)
Query: 51 TLHIKWAQKRDAGVYECQLS-----TQPVRSFFVNLNVVVPTAE----ILGSP-DLHVDE 100
L + DAG Y C L+ Q + + L + E I+ +
Sbjct: 181 HLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASL 240
Query: 101 GSTINLTCSIKYSP-EPPAYIFWYHHDEVI---SYDSSR---GGVSVITEKGEVT-TSYL 152
GS + + C + P + W+ ++ +Y R G +E E L
Sbjct: 241 GSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPL 300
Query: 153 LIQQAELKDSG-KYSCSPSN-ADVASVYVHV 181
+ +D + C N ++ V
Sbjct: 301 IFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
Score = 49.7 bits (118), Expect = 2e-07
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 14/97 (14%)
Query: 94 PDLHVDEGSTINLTCSIKYSP-----EPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT 148
EG + L C P + W+ +D + + + +
Sbjct: 26 KREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEE--TRMWAQDGA- 82
Query: 149 TSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
L + A +DSG Y C+ NA D S+ + V
Sbjct: 83 ---LWLLPALQEDSGTYVCTTRNASYCDKMSIELRVF 116
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 63.5 bits (154), Expect = 8e-13
Identities = 33/183 (18%), Positives = 65/183 (35%), Gaps = 23/183 (12%)
Query: 12 PTRVSWIR-HRDIHILTVGSYTYTSDQRFSAIHRREGDEW----TLHIKWAQKRDAGVYE 66
+W + + + + S+ F+ + +L + +D GVY
Sbjct: 28 LGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYT 87
Query: 67 CQLSTQPVRSFFVNLNVVV---PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWY 123
++ + R + V T L + V E ++ LTC S + A I W
Sbjct: 88 LDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTC---LSNDIGANIQWL 144
Query: 124 HHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN----ADVASVYV 179
+ + + + R +S S L I + +D+G+Y C SN S+ +
Sbjct: 145 FNSQSLQ-LTERMTLSQ-------NNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKL 196
Query: 180 HVL 182
++
Sbjct: 197 DII 199
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 64.3 bits (156), Expect = 1e-12
Identities = 23/142 (16%), Positives = 52/142 (36%), Gaps = 12/142 (8%)
Query: 50 WTLHIKWAQKRDAGVYECQ--LSTQPVRSFFVNLNVVVPTA--EILGSPDLHVDEGSTIN 105
+ ++ + Y C+ + + V S + + ++ + + V +G I
Sbjct: 141 YDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENIT 200
Query: 106 LTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165
L C + + W + + + + S L I AEL+DSG Y
Sbjct: 201 LMCIVIGNEVV--NFEWTYPRKESGRLVEPV-TDFLLDMPYHIRSILHIPSAELEDSGTY 257
Query: 166 SCSPSNA-----DVASVYVHVL 182
+C+ + + D ++ + V+
Sbjct: 258 TCNVTESVNDHQDEKAINITVV 279
Score = 45.5 bits (107), Expect = 3e-06
Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 19/94 (20%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153
P+L ++ ST LTCS A + W + + ++ + +S L
Sbjct: 8 PELVLNVSSTFVLTCS------GSAPVVWERMSQEPPQEMAK-------AQDGTFSSVLT 54
Query: 154 IQQAELKDSGKYSCSPSNA------DVASVYVHV 181
+ D+G+Y C+ +++ + +Y+ V
Sbjct: 55 LTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFV 88
Score = 43.2 bits (101), Expect = 2e-05
Identities = 20/135 (14%), Positives = 35/135 (25%), Gaps = 34/135 (25%)
Query: 51 TLHIKWAQKRDAGVYEC--QLSTQPVRSFFVNLNVVVPTAEIL------GSPDLHVDEGS 102
L + D G Y C S L + VP + + + E +
Sbjct: 52 VLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEIT 111
Query: 103 TINLTCSIKYSPEPPAYIFWYHHDEV----ISYDSSRGGVSVITEKGEVTTSYLLIQQAE 158
I + C + +P + + + YD RG +
Sbjct: 112 EITIPCRVT---DPQLVVTLHEKKGDVALPVPYDHQRGFSGIF----------------- 151
Query: 159 LKDSGKYSCSPSNAD 173
+ Y C + D
Sbjct: 152 --EDRSYICKTTIGD 164
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 62.5 bits (152), Expect = 2e-12
Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 15/123 (12%)
Query: 63 GVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFW 122
Y S R + ++ G ++ EG+ +N+TC + P A I W
Sbjct: 1 ATYAAASSALVPR------GSHMYAPKLQGPVAVYTWEGNQVNITC--EVFAYPSATISW 52
Query: 123 YHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYV 179
+ +++ + S I + SYL + D G Y+C+ N + +
Sbjct: 53 FRDGQLLPSSNY----SNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFIL 108
Query: 180 HVL 182
Sbjct: 109 VQA 111
Score = 28.3 bits (63), Expect = 1.7
Identities = 5/21 (23%), Positives = 7/21 (33%)
Query: 51 TLHIKWAQKRDAGVYECQLST 71
L + + D G Y C
Sbjct: 77 YLEVTPDSENDFGNYNCTAVN 97
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 63.7 bits (154), Expect = 3e-12
Identities = 31/186 (16%), Positives = 50/186 (26%), Gaps = 31/186 (16%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS- 70
+ W R L + R I + + L + D G Y C L
Sbjct: 47 GLTLIWYWTRQDRDLEEPINFRLPENR---ISKEKD---VLWFRPTLLNDTGNYTCMLRN 100
Query: 71 TQPVRSFFVNLNVVVPTAEILGSPDLHVD----EGSTINLTC---SIKYSPEPPAYIFWY 123
T L VV + L V E +TC + I WY
Sbjct: 101 TTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWY 160
Query: 124 HHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD-------VAS 176
I ++ L A + ++G Y+C + + +
Sbjct: 161 MGCYKIQNFNNV----------IPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRT 210
Query: 177 VYVHVL 182
+ V V+
Sbjct: 211 LTVKVV 216
Score = 61.4 bits (148), Expect = 2e-11
Identities = 22/162 (13%), Positives = 50/162 (30%), Gaps = 23/162 (14%)
Query: 43 HRREGDEWTLHIKWAQKRDAGVYECQLS-----TQPVRSFFVNLNVVVPTA----EILGS 93
+ + L A + G Y C ++ + + + VV ++ S
Sbjct: 170 NNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHS 229
Query: 94 P----DLHVDEGSTINLTCSIK--YSPEPPAYIFWYHHDEVISYDSSRG----GVSVITE 143
P + G + + C++ + + ++W + + +S
Sbjct: 230 PNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRT 289
Query: 144 KGEVTTSYLLIQQAELKD-SGKYSCSPSNA---DVASVYVHV 181
+ E T L I++ +D Y C +A + V
Sbjct: 290 EDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331
Score = 41.8 bits (97), Expect = 7e-05
Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 19/104 (18%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAY---------IFWYHHD---EVISYDSSRGGVSVI 141
+ V E + C + Y + WY ++ + R + I
Sbjct: 15 RQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRI 74
Query: 142 TEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+++ +V L + L D+G Y+C N + + V+
Sbjct: 75 SKEKDV----LWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVV 114
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 62.5 bits (151), Expect = 3e-12
Identities = 25/183 (13%), Positives = 48/183 (26%), Gaps = 23/183 (12%)
Query: 12 PTRVSWIR-HRDIHILTVGSYTYTSDQRFSAIHRREGDEW--------TLHIKWAQKRDA 62
+ W R + S + +H G L + AQ D
Sbjct: 30 HYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDE 89
Query: 63 GVYECQLSTQP--VRSFFVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYSPEP 116
Y C + LNV +++ + TC+ + P
Sbjct: 90 RDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNG-NP 148
Query: 117 PAYIFWYHHDEVISYDSSRGGVSVITEKGEV-------TTSYLLIQQAELKDSGKYSCSP 169
I WY + + + +T + TS L ++ + + C+
Sbjct: 149 APKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAA 208
Query: 170 SNA 172
+
Sbjct: 209 HYS 211
Score = 40.6 bits (94), Expect = 1e-04
Identities = 14/106 (13%), Positives = 35/106 (33%), Gaps = 17/106 (16%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-----VISYDSSRGGVSVITEKGE-- 146
P + V G ++ L C+ + + ++ + S + + V
Sbjct: 8 PLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGR 67
Query: 147 ------VTTSYLLIQQAELKDSGKYSC----SPSNADVASVYVHVL 182
+ L++ +A++ D Y C + A+ ++V
Sbjct: 68 SPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVF 113
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 59.2 bits (144), Expect = 4e-12
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 10/90 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D V EG + ++ ++ P+P + W + + + D R + E G L I
Sbjct: 14 DQSVREGQDVIMSIRVQGEPKP--VVSWLRNRQPVRPDQRR--FAEEAEGGLCR---LRI 66
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHV 181
AE D+G Y+C N + V
Sbjct: 67 LAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 32.6 bits (75), Expect = 0.020
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
+RF EG L I A++ DAG Y C+
Sbjct: 48 PDQRRF--AEEAEGGLCRLRILAAERGDAGFYTCK 80
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 59.2 bits (144), Expect = 5e-12
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 11/95 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
V G +++ P + WYH+ + +SS+ + G +T L I
Sbjct: 17 SHRVPCGQNTRFILNVQSKPTA--EVKWYHNGVELQ-ESSK--IHYTNTSGVLT---LEI 68
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVLNGEY 186
DSG Y +N + V G+Y
Sbjct: 69 LDCHTDDSGTYRAVCTNYKGEASDYATLDVTGGDY 103
Score = 28.8 bits (65), Expect = 0.53
Identities = 6/35 (17%), Positives = 9/35 (25%), Gaps = 2/35 (5%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
+ + TL I D+G Y
Sbjct: 50 QESSKIHYTN--TSGVLTLEILDCHTDDSGTYRAV 82
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 59.3 bits (144), Expect = 7e-12
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
V EG ++ L C I P P +FW ++E++ +++ R +S+ + T LLI
Sbjct: 24 SKKVLEGDSVKLECQISAIPPP--KLFWKRNNEMVQFNTDR--ISLYQDNTGRVT--LLI 77
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ KD+G Y+ S N + + V
Sbjct: 78 KDVNKKDAGWYTVSAVNEAGVTTCNTRLDVT 108
Score = 30.4 bits (69), Expect = 0.16
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
+ ++++ TL IK K+DAG Y
Sbjct: 57 QFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVS 91
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 58.5 bits (142), Expect = 8e-12
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+ + G T NL +P+P W D + + ++ K T+ +
Sbjct: 11 KIKIKAGFTHNLEVDFIGAPDP--TATWTVGDSGAA-LAPE---LLVDAKSSTTS--IFF 62
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHV 181
A+ DSG Y N D A V V
Sbjct: 63 PSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 31.9 bits (73), Expect = 0.036
Identities = 4/37 (10%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70
+ ++ A++ D+G Y+ ++
Sbjct: 44 ALAPELLV--DAKSSTTSIFFPSAKRADSGNYKLKVK 78
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 58.9 bits (143), Expect = 1e-11
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 11/91 (12%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D V G ++ L + + W + I +S + V + L I
Sbjct: 16 DQKVRAGESVELFGKVTGTQPI--TCTWMKFRKQIQ-ESEH--MKVENSENGSK---LTI 67
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVL 182
A + G Y+ N A V + V+
Sbjct: 68 LAARQEHCGCYTLLVENKLGSRQAQVNLTVV 98
Score = 33.1 bits (76), Expect = 0.020
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVVVPTAEILG 92
+ + + L I A++ G Y + + R VNL VV G
Sbjct: 49 QESEHMKVEN--SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAG 106
Query: 93 SP 94
+P
Sbjct: 107 TP 108
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 59.0 bits (142), Expect = 1e-11
Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 5/94 (5%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDS--SRGGVSVITEKGEVTTS 150
S + + G + L C+ + W + + +R + + + S
Sbjct: 15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74
Query: 151 YLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
L I D G Y+C+ S+ S +V V
Sbjct: 75 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 108
Score = 30.1 bits (67), Expect = 0.25
Identities = 11/80 (13%), Positives = 22/80 (27%), Gaps = 2/80 (2%)
Query: 8 KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67
+ L + + + S ++ TL I + D G+Y C
Sbjct: 33 RTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS-TLTIDGVTRSDQGLYTC 91
Query: 68 QLSTQP-VRSFFVNLNVVVP 86
S+ + + V
Sbjct: 92 AASSGLMTKKNSTFVRVHEK 111
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 58.1 bits (141), Expect = 2e-11
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+ EG + TC + +P+P I+W+ + IS S ++ T L
Sbjct: 17 HYKIFEGMPVTFTCRVAGNPKP--KIYWFKDGKQISPKSDH----YTIQRDLDGTCSLHT 70
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ L D G Y+ +N + + V
Sbjct: 71 TASTLDDDGNYTIMAANPQGRISCTGRLMV 100
Score = 29.6 bits (67), Expect = 0.27
Identities = 7/34 (20%), Positives = 10/34 (29%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67
+ I R +LH + D G Y
Sbjct: 50 SPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTI 83
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 58.2 bits (141), Expect = 2e-11
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 12/88 (13%)
Query: 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQA 157
G +NL + P P + W + D+SR V V T + ++QA
Sbjct: 36 RKVGEQLNLVVPFQGKPRPQ--VVWTKGGAPL--DTSR--VHVRTSDFDTV---FFVRQA 86
Query: 158 ELKDSGKYSCSPSNA---DVASVYVHVL 182
DSG+Y S D A++ + V+
Sbjct: 87 ARSDSGEYELSVQIENMKDTATIRIRVV 114
Score = 31.6 bits (72), Expect = 0.054
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 44 RREGDEWTLHIKWAQKRDAGVYECQLS 70
R + ++ A + D+G YE +
Sbjct: 73 RTSDFDTVFFVRQAARSDSGEYELSVQ 99
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 58.0 bits (140), Expect = 6e-11
Identities = 22/164 (13%), Positives = 44/164 (26%), Gaps = 35/164 (21%)
Query: 14 RVSWIRHRD---IHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70
+ W + D I T+ + TL IK + D +Y+ +
Sbjct: 32 DIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFK-----NGTLKIKHLKTDDQDIYKVSIY 86
Query: 71 TQP---VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE 127
V +L + + P + LTC + +P + Y +
Sbjct: 87 DTKGKNVLEKIFDLKIQER----VSKPKISW-TCINTTLTCEVMNGTDP--ELNLYQDGK 139
Query: 128 VISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
+ ++ + S K+ C+ N
Sbjct: 140 HLKLSQR-----------------VITHKWTTSLSAKFKCTAGN 166
Score = 45.3 bits (107), Expect = 3e-06
Identities = 17/99 (17%), Positives = 25/99 (25%), Gaps = 6/99 (6%)
Query: 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT 148
EI + + G INL + I W + R EK
Sbjct: 2 EITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYK 61
Query: 149 TSY---LLIQQAELKDSGKYSCSPSNAD---VASVYVHV 181
L I+ + D Y S + V +
Sbjct: 62 LFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDL 100
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 56.6 bits (137), Expect = 7e-11
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 8/88 (9%)
Query: 81 LNVVVPTAEILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVS 139
V I+ D+ V EGS+ C + SP + W+ + +
Sbjct: 7 GLVQGRRVHIIEDLEDVDVQEGSSATFRC--RISPANYEPVHWFLDKTPLH-ANEL--NE 61
Query: 140 VITEKGEVTTSYLLIQQAELKDSGKYSC 167
+ + G L ++Q LKDSG
Sbjct: 62 IDAQPGGYHV--LTLRQLALKDSGTIYF 87
Score = 33.9 bits (78), Expect = 0.009
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 4/61 (6%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGS 93
+++ I + G L ++ +D+G + Q L V + S
Sbjct: 55 HANELNE-IDAQPGGYHVLTLRQLALKDSGTIYFEAGDQ---RASAALRVTEKPSVFSRS 110
Query: 94 P 94
Sbjct: 111 G 111
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 56.3 bits (136), Expect = 7e-11
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 14/98 (14%)
Query: 89 EILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147
I P + V T L+C SP P I W ++S SR E G
Sbjct: 10 VIRQGPVNQTVAVDGTFVLSCVATGSPVP--TILWRKDGVLVSTQDSR---IKQLENGV- 63
Query: 148 TTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
L I+ A+L D+G+Y+C S S Y+ V
Sbjct: 64 ----LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQ 97
Score = 31.3 bits (71), Expect = 0.075
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVVVPTAEILG--SPDLHVDEGS 102
L I++A+ D G Y C ST ++ + V + D ++ +
Sbjct: 63 VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPSA 117
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 58.1 bits (140), Expect = 7e-11
Identities = 22/168 (13%), Positives = 56/168 (33%), Gaps = 26/168 (15%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREG-----DEWTLHIKWAQKRDAGVYE 66
++W + + + + S + ++ ++L + + D G Y
Sbjct: 28 VNFITW-LFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYR 86
Query: 67 CQLSTQP---VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWY 123
Q+ST+ + S+ + + + ++ L + ++LTCS++ + + ++ W
Sbjct: 87 AQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFR-WE 145
Query: 124 HHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
+S VS + Y+C N
Sbjct: 146 ALGNTLS-SQPNLTVSWDP---------------RISSEQDYTCIAEN 177
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 55.8 bits (135), Expect = 8e-11
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 6/87 (6%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D V G + + + E A + W + ++ + S + G+ L+
Sbjct: 17 DQQVFVGDRVEMAVEVS---EEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHI--LIF 71
Query: 155 QQAELKDSGKYSCSPSNADVASVYVHV 181
+D G+Y + + V
Sbjct: 72 SDVVQEDRGRYQVITNG-GQCEAELIV 97
Score = 30.8 bits (70), Expect = 0.082
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 44 RREGDEWTLHIKWAQKRDAGVYECQ 68
+++G L + D G Y+
Sbjct: 61 KKDGKRHILIFSDVVQEDRGRYQVI 85
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 56.4 bits (136), Expect = 8e-11
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 13 TRVSWIRHRDIHILTVGSYT----YTSDQRFSAIHRREGDE---WTLHIKWAQKRDAGVY 65
++++W RH + + V T Y+ +R + R G E +L + + D G Y
Sbjct: 35 SQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNY 94
Query: 66 ECQLSTQP--VRSFFVNLNVVVP 86
C T P RS + L V+
Sbjct: 95 TCLFVTFPQGSRSVDIWLRVLAK 117
Score = 37.9 bits (88), Expect = 4e-04
Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 26/122 (21%)
Query: 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFW--------------YHH 125
++ V P ++ G G ++ L C ++ ++ +H
Sbjct: 1 DVVVQAP-TQVPGFL------GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQ 53
Query: 126 DEVISYDSS-RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS----PSNADVASVYVH 180
+ SY S R E+ + L + ++D G Y+C P + +++
Sbjct: 54 TQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLR 113
Query: 181 VL 182
VL
Sbjct: 114 VL 115
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 56.4 bits (136), Expect = 9e-11
Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 10/107 (9%)
Query: 79 VNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGV 138
V L V P ++ + + I ++ +P P + W H+ + + S+
Sbjct: 1 VALTVYYP-PRVVSLEEPELRLEHCI--EFVVRGNPPP--TLHWLHNGQPL--RESKIIH 53
Query: 139 SVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
++GE++ LL + ++G Y+ N ++ H L
Sbjct: 54 VEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFL 100
Score = 27.5 bits (61), Expect = 1.7
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 2/36 (5%)
Query: 34 TSDQRFSAIHRREGD--EWTLHIKWAQKRDAGVYEC 67
+ + +EG+ E L + G Y
Sbjct: 47 RESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTL 82
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 55.4 bits (134), Expect = 1e-10
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 10/90 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+EG + C I+ + + WY + +S + + E G L +
Sbjct: 10 HAVGEEGGHVKYVCKIENYDQST-QVTWYFGVRQLE-NSEK--YEITYEDGVAI---LYV 62
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ D G Y C N D + + V
Sbjct: 63 KDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 33.1 bits (76), Expect = 0.015
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 11/57 (19%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
T+V+W + + L + +++ + E L++K K D G Y C+
Sbjct: 31 STQVTW--YFGVRQLE-------NSEKYEITY--EDGVAILYVKDITKLDDGTYRCK 76
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 55.4 bits (134), Expect = 1e-10
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 10/90 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
V +GS + + P+P WY + I S R + + V L+I
Sbjct: 14 SQTVGQGSDAHFRVRVVGKPDP--ECEWYKNGVKIE-RSDR--IYWYWPEDNVCE--LVI 66
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ +DS N + ++ V
Sbjct: 67 RDVTGEDSASIMVKAINIAGETSSHAFLLV 96
Score = 30.3 bits (69), Expect = 0.13
Identities = 5/35 (14%), Positives = 10/35 (28%), Gaps = 1/35 (2%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
R + E + L I+ D+ +
Sbjct: 47 ERSDRIY-WYWPEDNVCELVIRDVTGEDSASIMVK 80
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 59.0 bits (142), Expect = 1e-10
Identities = 24/176 (13%), Positives = 42/176 (23%), Gaps = 23/176 (13%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS- 70
+ WI TV + C
Sbjct: 187 LEQAGWILTELEQSATVMKSGGLPSLG------------LTLANVTSDLNRKNVTCWAEN 234
Query: 71 TQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVIS 130
V +NV P + E + S+ P P + W + V++
Sbjct: 235 DVGRAEVSVQVNVSFPASV----QLHTAVEMHHWCIPFSVDGQPAPS--LRWLFNGSVLN 288
Query: 131 YDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
S + E L + Q ++G Y+ +N AS+ +
Sbjct: 289 ETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 344
Score = 50.5 bits (120), Expect = 9e-08
Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 12/92 (13%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152
P+ VD G + L C ++ W + S + G +
Sbjct: 165 VPNASVDVGDDVLLRCQVEGRGLEQ--AGWILTELEQSATVMKSGGL-------PSLGLT 215
Query: 153 LIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
L + +C N SV V+V
Sbjct: 216 LANVTSDLNRKNVTCWAENDVGRAEVSVQVNV 247
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 55.5 bits (134), Expect = 1e-10
Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 14/98 (14%)
Query: 89 EILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147
IL P + + T L C P P I W R + I E+G
Sbjct: 10 IILQGPANQTLAVDGTALLKCKATGDPLP--VISWLKEGFTFPGRDPR---ATIQEQGT- 63
Query: 148 TTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
L I+ + D+G Y+C +++ S + V
Sbjct: 64 ----LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
Score = 31.2 bits (71), Expect = 0.070
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 51 TLHIKWAQKRDAGVYEC 67
TL IK + D G Y C
Sbjct: 63 TLQIKNLRISDTGTYTC 79
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 57.5 bits (138), Expect = 1e-10
Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 6/135 (4%)
Query: 36 DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVR-SFFVNLNVVVPTAEILGSP 94
D + EG TL + + Y C + + + + + + +
Sbjct: 40 DSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHL 99
Query: 95 DLHVDEGSTINLTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153
++ G I + CS+ P I D ++ + K T S +
Sbjct: 100 SGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEF---LEDADRKSLETKSLEV 156
Query: 154 IQQAELKDSGK-YSC 167
++D GK C
Sbjct: 157 TFTPVIEDIGKVLVC 171
Score = 45.1 bits (106), Expect = 3e-06
Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 14/87 (16%)
Query: 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQA 157
G +++LTCS P W DS G E TTS L +
Sbjct: 13 AQIGDSVSLTCSTTGCESPF--FSWRTQI-----DSPLNGK----VTNEGTTSTLTMNPV 61
Query: 158 ELKDSGKYSCSPSNA---DVASVYVHV 181
+ Y C+ + + V +
Sbjct: 62 SFGNEHSYLCTATCESRKLEKGIQVEI 88
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 57.5 bits (138), Expect = 2e-10
Identities = 33/190 (17%), Positives = 55/190 (28%), Gaps = 32/190 (16%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQ--------RFSAIHRREGDEWTLHIKWAQKRDAG 63
P V W R +I T D+ RF + + +L I A+ D G
Sbjct: 36 PLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTG 95
Query: 64 VYECQLSTQP-----VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPE--P 116
Y ++ + +NL V + ++ G L+CS+ S E P
Sbjct: 96 SYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGP 155
Query: 117 PAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADV-- 174
P W G + +S L + +C
Sbjct: 156 PLTFSWT------------GNALSPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQGAQV 203
Query: 175 ---ASVYVHV 181
+V ++V
Sbjct: 204 TTERTVQLNV 213
Score = 34.8 bits (79), Expect = 0.009
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 18/98 (18%)
Query: 94 PDLHVDEGSTINLTCSIKYSPE-----PPAYIFWY------HHDEVISYDSSRGGVSV-- 140
+ V EG + + CS Y PP Y++W+ ++ EV++ ++ V
Sbjct: 8 KSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPET 67
Query: 141 -----ITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173
+ + L I A ++D+G Y
Sbjct: 68 QGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGR 105
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 54.7 bits (132), Expect = 3e-10
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 15/106 (14%)
Query: 81 LNVVVPTA-EILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGV 138
L V+ A I G+ + G +I ++C+ +P P I W+ +E + + S
Sbjct: 3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPP--QIMWFKDNETLV-EDSG--- 56
Query: 139 SVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
++ + G L I++ +D G Y+C + + +
Sbjct: 57 -IVLKDGNRN---LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII 98
Score = 28.5 bits (64), Expect = 0.61
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 43 HRREGDEWTLHIKWAQKRDAGVYECQ 68
+ L I+ +K D G+Y CQ
Sbjct: 57 IVLKDGNRNLTIRRVRKEDEGLYTCQ 82
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 54.3 bits (131), Expect = 3e-10
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 8/95 (8%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D G + L C + E A + W+ + E I + E L+I
Sbjct: 16 DTTAYCGERVELECEVS---EDDANVKWFKNGEEIIPGPKSR----YRIRVEGKKHILII 68
Query: 155 QQAELKDSGKYSCSPSNADV-ASVYVHVLNGEYTG 188
+ A D+ +YS + A + V + +G +G
Sbjct: 69 EGATKADAAEYSVMTTGGQSSAKLSVDLKSGPSSG 103
Score = 30.4 bits (69), Expect = 0.15
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 44 RREGDEWTLHIKWAQKRDAGVYECQLSTQ 72
R EG + L I+ A K DA Y +
Sbjct: 58 RVEGKKHILIIEGATKADAAEYSVMTTGG 86
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 54.3 bits (131), Expect = 3e-10
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+ V G+ L C + P P + W + ++ S R G LL+
Sbjct: 22 PVRVVSGAEAELKCVVLGEPPP--VVVWEKGGQQLA-ASER---LSFPADGAEHG--LLL 73
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVL 182
A D+G Y C NA A+ V VL
Sbjct: 74 TAALPTDAGVYVCRARNAAGEAYAAAAVTVL 104
Score = 32.4 bits (74), Expect = 0.033
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67
+ +R S +G E L + A DAGVY C
Sbjct: 55 AASERLSFPA--DGAEHGLLLTAALPTDAGVYVC 86
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 53.9 bits (130), Expect = 5e-10
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D V+ G I L C I S P W + + +S R + +KG L+I
Sbjct: 16 DQTVNLGKEICLKCEI--SENIP--GKWTKNGLPVQ-ESDR---LKVVQKG--RIHKLVI 65
Query: 155 QQAELKDSGKYSCSPSNADV-ASVYVHVLNGEYTG 188
A +D G Y +P +V VHV++G +G
Sbjct: 66 ANALTEDEGDYVFAPDAYNVTLPAKVHVISGPSSG 100
Score = 32.3 bits (74), Expect = 0.029
Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 3/53 (5%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVP 86
R + +G L I A D G Y V + ++V+
Sbjct: 47 QESDRLKVVQ--KGRIHKLVIANALTEDEGDYVFAPDAYNV-TLPAKVHVISG 96
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 53.2 bits (128), Expect = 7e-10
Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 10/91 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
V +T+ C +P P + W + + + GG V + L++
Sbjct: 17 LHAVPAANTVKFRCPAGGNPMP--TMRWLKNGKEFKQEHRIGGYKVRNQHWS-----LIM 69
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ D G Y+C N + ++ V+
Sbjct: 70 ESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
Score = 32.0 bits (73), Expect = 0.037
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67
+ R R W+L ++ D G Y C
Sbjct: 50 KQEHRIGGYKVRNQH-WSLIMESVVPSDKGNYTC 82
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 56.7 bits (137), Expect = 7e-10
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYH-HDEVISYDSSRGGVSVITEKGEVTTSY 151
DL++ EG L C P + + W + V+S+ S +SV+ +
Sbjct: 359 PRDLNISEGRMAELKCR----TPPMSSVKWLLPNGTVLSHASRHPRISVLND------GT 408
Query: 152 LLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
L L D+G Y+C +N AS Y++V
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
Score = 30.9 bits (70), Expect = 0.29
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67
+ V W+ + +L+ S R S ++ +G TL+ D GVY C
Sbjct: 379 MSSVKWL-LPNGTVLSHASR----HPRISVLN--DG---TLNFSHVLLSDTGVYTC 424
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 53.8 bits (129), Expect = 8e-10
Identities = 18/107 (16%), Positives = 44/107 (41%), Gaps = 8/107 (7%)
Query: 84 VVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE 143
++ T I + ++ ++G +I L C + + + W D++++ ++ G +
Sbjct: 1 MMMTGTIETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPS 60
Query: 144 KGEVTTSY----LLIQQAELKDSGKYSCS----PSNADVASVYVHVL 182
+ L +Q + D+G+Y C P +++ VL
Sbjct: 61 FKDRVAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVL 107
Score = 39.9 bits (93), Expect = 8e-05
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 3/76 (3%)
Query: 13 TRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72
T+V+W + + + + F L ++ D G Y C T
Sbjct: 35 TQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPG-LGLTLQSLTVNDTGEYFCIYHTY 93
Query: 73 PVRSF--FVNLNVVVP 86
P ++ + L V+
Sbjct: 94 PDGTYTGRIFLEVLES 109
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 53.1 bits (128), Expect = 8e-10
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 8/77 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D V S P P W + I+ + ++E L I
Sbjct: 15 DTTVSSDSVAKFAVKATGEPRPT--AIWTKDGKAIT-QGGK---YKLSEDKGGFF--LEI 66
Query: 155 QQAELKDSGKYSCSPSN 171
+ + DSG Y+C+ N
Sbjct: 67 HKTDTSDSGLYTCTVKN 83
Score = 30.7 bits (70), Expect = 0.11
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67
T ++ + + L I D+G+Y C
Sbjct: 48 TQGGKYKLSE--DKGGFFLEIHKTDTSDSGLYTC 79
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 52.9 bits (127), Expect = 1e-09
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 14/100 (14%)
Query: 83 VVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVIT 142
P + L V G + L C ++ + I W + +
Sbjct: 6 QAQPWGVPVEVESLLVHPGDLLQLRCRLR---DDVQSINWLRDGVQLV----------ES 52
Query: 143 EKGEVTTSYLLIQQAELKDSGKYSCSPSN-ADVASVYVHV 181
+ +T + ++ + DSG Y+C S+ + + Y V
Sbjct: 53 NRTRITGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92
Score = 29.4 bits (66), Expect = 0.26
Identities = 7/34 (20%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNV 83
+ ++ + D+G+Y C S+ + + ++NV
Sbjct: 61 EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 55.5 bits (134), Expect = 2e-09
Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYH-HDEVISYDSSRGGVSVITEKGEVTTSY 151
DL+V EG L C + + W + V+++ + + ++V+++
Sbjct: 348 PADLNVTEGMAAELKCR---ASTSLTSVSWITPNGTVMTHGAYKVRIAVLSD------GT 398
Query: 152 LLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
L ++D+G Y+C SN+ AS ++V
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVT 432
Score = 32.4 bits (74), Expect = 0.090
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67
T VSWI + ++T G+Y R + + +G TL+ +D G+Y C
Sbjct: 369 LTSVSWI-TPNGTVMTHGAY----KVRIAVLS--DG---TLNFTNVTVQDTGMYTC 414
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 51.9 bits (125), Expect = 2e-09
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 14/90 (15%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D V EG L CS++ +P P I W + + I Y S E G L I
Sbjct: 20 DCAVIEGQDFVLQCSVRGTPVP--RITWLLNGQPIQYARS------TCEAGVAE---LHI 68
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHV 181
Q A +D G Y+C NA S +V V
Sbjct: 69 QDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 28.4 bits (64), Expect = 0.70
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 43 HRREGDEWTLHIKWAQKRDAGVYEC 67
E LHI+ A D G Y C
Sbjct: 57 STCEAGVAELHIQDALPEDHGTYTC 81
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 52.0 bits (125), Expect = 2e-09
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 8/95 (8%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+ V EG + + C + + W + + SSR + + L++
Sbjct: 17 TMEVLEGESCSFECVLSH-ESASDPAMWTVGGKTVG-SSSR--FQATRQGRKYI---LVV 69
Query: 155 QQAELKDSGKYSCSPSNADV-ASVYVHVLNGEYTG 188
++A D+G+ S AS+ V +G +G
Sbjct: 70 REAAPSDAGEVVFSVRGLTSKASLIVRERSGPSSG 104
Score = 30.4 bits (69), Expect = 0.13
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
S RF A +G ++ L ++ A DAG
Sbjct: 51 GSSSRFQATR--QGRKYILVVREAAPSDAGEVVFS 83
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 54.3 bits (130), Expect = 2e-09
Identities = 30/162 (18%), Positives = 50/162 (30%), Gaps = 14/162 (8%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71
T + IR + + + + G HI Q RD+G Y C +
Sbjct: 31 CTELEGIRAS-LQKVENDTSLQSERATLLEEQLPLGK-ALFHIPSVQVRDSGQYRCLVIC 88
Query: 72 QP-VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVIS 130
++ + V I + L V + LTC + P + W + +
Sbjct: 89 GAAWDYKYLTVKVKASYMRI-DTRILEVPGTGEVQLTCQARGYPLA--EVSWQNVSVPAN 145
Query: 131 YDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172
R + TS L ++ S +SC NA
Sbjct: 146 TSHIRTPEGLYQ-----VTSVLRLKPQ---PSRNFSCMFWNA 179
Score = 42.7 bits (100), Expect = 2e-05
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 11/94 (11%)
Query: 83 VVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYD---SSRGGVS 139
V P VD GS+++L C + + + +
Sbjct: 5 VTAPKEVYT------VDVGSSVSLECD--FDRRECTELEGIRASLQKVENDTSLQSERAT 56
Query: 140 VITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173
++ E+ + + I +++DSG+Y C
Sbjct: 57 LLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGA 90
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 52.0 bits (125), Expect = 2e-09
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+ V EG + +C P P + W +V+S + +T +T I
Sbjct: 23 SMTVYEGESARFSCDTDGEPVPT--VTWLRKGQVLSTSARH----QVTTTKYKST--FEI 74
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ D G YS N+ A + +
Sbjct: 75 SSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 28.1 bits (63), Expect = 0.85
Identities = 6/22 (27%), Positives = 7/22 (31%)
Query: 46 EGDEWTLHIKWAQKRDAGVYEC 67
+ T I Q D G Y
Sbjct: 66 TKYKSTFEISSVQASDEGNYSV 87
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 55.2 bits (133), Expect = 2e-09
Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 12/105 (11%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153
G T+ + C K ++ +E + S G VSV L
Sbjct: 254 SAWEAHLGDTLTIRCDTKQQGMT--KVWVSPSNEQVLSQGSNGSVSV-------RNGDLF 304
Query: 154 IQQAELKDSGKYSCSPSNA---DVASVYVHVLNGEYTGWSESLGT 195
++ +++D G Y+C + SV + V N G ++L
Sbjct: 305 FKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNA 349
Score = 29.8 bits (67), Expect = 0.70
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPD 95
L K Q D GVY C + + +++ + V + G D
Sbjct: 302 DLFFKKVQVEDGGVYTC-YAMGETFNETLSVELKVYNFTLHGHHD 345
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 51.5 bits (124), Expect = 3e-09
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D V G + L C + + P + W + I S + + +G + L+I
Sbjct: 17 DQWVAPGEDVELRCELSRAGTP---VHWLKDRKAIR-KSQK---YDVVCEGTMAM--LVI 67
Query: 155 QQAELKDSGKYSCSPSNADVASVYVHV 181
+ A LKD+G+Y+C ++ +HV
Sbjct: 68 RGASLKDAGEYTCEVEA-SKSTASLHV 93
Score = 30.0 bits (68), Expect = 0.16
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
Q++ + EG L I+ A +DAG Y C+
Sbjct: 49 RKSQKYDVVC--EGTMAMLVIRGASLKDAGEYTCE 81
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 51.6 bits (124), Expect = 3e-09
Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 9/87 (10%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153
P V +G I LT + + A + W + + I S+ + G T L
Sbjct: 24 PAYQVSKGHKIRLTVELA---DHDAEVKWLKNGQEIQMSGSK---YIFESIGAKRT--LT 75
Query: 154 IQQAELKDSGKYSCSPSNADV-ASVYV 179
I Q L D Y C ++V
Sbjct: 76 ISQCSLADDAAYQCVVGGEKCSTELFV 102
Score = 31.2 bits (71), Expect = 0.082
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 35 SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
S ++ I G + TL I D Y+C
Sbjct: 59 SGSKY--IFESIGAKRTLTISQCSLADDAAYQCV 90
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 52.0 bits (125), Expect = 3e-09
Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 12/106 (11%)
Query: 79 VNLNVVVPTAEILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGG 137
L V + + EG+T L C + S P + W+ E + D R
Sbjct: 11 AMLTVRALPIKFTEGLRNEEATEGATAVLRCEL--SKMAP--VEWWKGHETLR-DGDR-- 63
Query: 138 VSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADV-ASVYVHVL 182
S+ + L I+ +D+G+Y C A + V +
Sbjct: 64 HSLRQDGARCE---LQIRGLVAEDAGEYLCMCGKERTSAMLTVRAM 106
Score = 30.8 bits (70), Expect = 0.11
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
R S +G L I+ DAG Y C
Sbjct: 59 RDGDRHSLRQ--DGARCELQIRGLVAEDAGEYLCM 91
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 51.6 bits (124), Expect = 4e-09
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
DL V EG L C + P + W + + V+ + S+ E + L++
Sbjct: 17 DLEVLEGGAATLRCVLSSVAAP---VKWCYGNNVLR-PGDK--YSLRQEGAMLE---LVV 67
Query: 155 QQAELKDSGKYSCSPSNAD-VASVYVHVL 182
+ +DSG+YSCS + A++ V L
Sbjct: 68 RNLRPQDSGRYSCSFGDQTTSATLTVTAL 96
Score = 30.8 bits (70), Expect = 0.10
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
++S EG L ++ + +D+G Y C
Sbjct: 49 RPGDKYSLRQ--EGAMLELVVRNLRPQDSGRYSCS 81
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 51.6 bits (124), Expect = 4e-09
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
DL V EG + C + P P + W + + DS+ ++ + V + L+I
Sbjct: 18 DLTVQEGKLCRMDCKVSGLPTP--DLSWQLDGKPVRPDSAH---KMLVRENGVHS--LII 70
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ +D+G Y+C +N + S+ + V
Sbjct: 71 EPVTSRDAGIYTCIATNRAGQNSFSLELVVA 101
Score = 30.4 bits (69), Expect = 0.13
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67
D + RE +L I+ RDAG+Y C
Sbjct: 51 RPDSAHK-MLVRENGVHSLIIEPVTSRDAGIYTC 83
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 53.0 bits (127), Expect = 4e-09
Identities = 20/160 (12%), Positives = 41/160 (25%), Gaps = 26/160 (16%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71
V W + + + + + + + F + +L I D YE +
Sbjct: 23 LKEVLW-KKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN 81
Query: 72 QPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISY 131
+ L V+ + P ++ E S LTC + + + Y E +
Sbjct: 82 I-TDTMKFFLYVLEM----VSKPMIYW-ECSNATLTCEVLEGTDVE--LKLYQGKEHLRS 133
Query: 132 DSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
+ + C N
Sbjct: 134 LRQ-----------------KTMSYQWTNLRAPFKCKAVN 156
Score = 37.6 bits (87), Expect = 0.001
Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 8/95 (8%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY- 151
S ++ + S P + W + ++ + + + K V
Sbjct: 2 SQQIYGVVYGNVTFHVP---SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTV 58
Query: 152 ---LLIQQAELKDSGKYSCSPSNAD-VASVYVHVL 182
L I D +Y N +++VL
Sbjct: 59 SGSLTIYNLTSSDEDEYEMESPNITDTMKFFLYVL 93
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 51.2 bits (123), Expect = 4e-09
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 10/95 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
L + LTC + WY + + +S V+ G L++
Sbjct: 19 SLTFTTSERVVLTCELSR---VDFPATWYKDGQKVE-ESEL---LVVKMDGRKHR--LIL 69
Query: 155 QQAELKDSGKYSCSPSNADV-ASVYVHVLNGEYTG 188
+A+++DSG++ C V V +G +G
Sbjct: 70 PEAKVQDSGEFECRTEGVSAFFGVTVQDPSGPSSG 104
Score = 35.5 bits (82), Expect = 0.002
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILG 92
+ +G + L + A+ +D+G +EC+ S F + V P+ G
Sbjct: 51 EESELLVVKM--DGRKHRLILPEAKVQDSGEFECRTEGV---SAFFGVTVQDPSGPSSG 104
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 54.7 bits (132), Expect = 4e-09
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Query: 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVS 139
+ + VDEG T+ C + +PP I W + + S G ++
Sbjct: 379 YFTCRRARIRDRKAQQVFVDEGHTVQFVC--RADGDPPPAILWLSPRKHLVSAKSNGRLT 436
Query: 140 VITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
V + L ++ A+++D+G Y C +NA D ++HV
Sbjct: 437 VFPD------GTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 27.0 bits (60), Expect = 4.9
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 11/56 (19%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67
P + W+ R + + S+ R + +G TL +++AQ +D G Y C
Sbjct: 414 PPAILWLSPRKHLV------SAKSNGRLTVFP--DG---TLEVRYAQVQDNGTYLC 458
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 54.5 bits (130), Expect = 4e-09
Identities = 20/149 (13%), Positives = 33/149 (22%), Gaps = 31/149 (20%)
Query: 44 RREGDEWTLHIKWAQKRDAGVYECQ-----LSTQPVRSFFVNLNVVVP--TAEILGSPDL 96
+ G L +K + + + C ++ L V+ E +
Sbjct: 321 QPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNW 380
Query: 97 HVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQ 156
E S C +P P + G
Sbjct: 381 TWPENSQQTPMCQAWGNPLP--ELKCLKD-------------------GTFPLPIGESVT 419
Query: 157 AELKDSGKYSCSPSNA---DVASVYVHVL 182
G Y C + V V+VL
Sbjct: 420 VTRDLEGTYLCRARSTQGEVTREVTVNVL 448
Score = 45.6 bits (107), Expect = 4e-06
Identities = 12/124 (9%), Positives = 31/124 (25%), Gaps = 12/124 (9%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQ-PVRSFFVNLNVVVPTAEILGSP-DLHVDEGSTINLTC 108
+ + ++ C + + L V + +P G + L C
Sbjct: 49 RKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRC 108
Query: 109 SI-KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167
+ +P + ++ + + + GE + +SC
Sbjct: 109 QVEGGAPRANLTVVLLRGEKELKREPAV---------GEPAEVTTTVLVRRDHHGANFSC 159
Query: 168 SPSN 171
Sbjct: 160 RTEL 163
Score = 45.2 bits (106), Expect = 5e-06
Identities = 20/158 (12%), Positives = 39/158 (24%), Gaps = 31/158 (19%)
Query: 36 DQRFSAIHRREGDE-WTLHIKWAQKRDAGVYE--CQLSTQPV-RSFFVNLNVVVPTAEIL 91
DQR + D D G C + + + + A +
Sbjct: 229 DQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNV 288
Query: 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY 151
V EG+ + + C P + + +
Sbjct: 289 ILTKPEVSEGTEVTVKCEA--HPRAKVTLNGVPAQPLGP------------------RAQ 328
Query: 152 LLIQQAELKDSGKYSCSPSNA-------DVASVYVHVL 182
LL++ + +SCS + + + VL
Sbjct: 329 LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL 366
Score = 41.8 bits (97), Expect = 8e-05
Identities = 19/153 (12%), Positives = 42/153 (27%), Gaps = 21/153 (13%)
Query: 43 HRREGDEWTLHIKWAQKRDAGVYECQ---------LSTQPVRSFFVNLNVVVPTAEILGS 93
E E T + + + C+ L S L V A
Sbjct: 135 AVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQL 194
Query: 94 P-DLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY 151
++ + + CS+ P A + D+ ++ + G +
Sbjct: 195 VSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGN-------DSFSAKA 247
Query: 152 LLIQQAELKDSGKYSCSPSNADV---ASVYVHV 181
+ AE + + + +C+ + V +
Sbjct: 248 SVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI 280
Score = 31.8 bits (71), Expect = 0.18
Identities = 7/80 (8%), Positives = 28/80 (35%), Gaps = 15/80 (18%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153
+ + G ++ +TCS +P ++ ++ ++ + +
Sbjct: 7 SKVILPRGGSVLVTCSTS-CDQPM----------LLGIETPLPKKELLLP----GNNRKV 51
Query: 154 IQQAELKDSGKYSCSPSNAD 173
+ + +++ + C + D
Sbjct: 52 YELSNVQEDSQPMCYSNCPD 71
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 51.0 bits (122), Expect = 5e-09
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 15/99 (15%)
Query: 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145
+ V G+ + C+ K S P + W +R + +
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICTAK-SKSPAYTLVW-----------TRLHNGKLPSRA 57
Query: 146 EVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
L I+ + D+G Y C+ SN D + +HV
Sbjct: 58 MDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
Score = 29.0 bits (65), Expect = 0.41
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 51 TLHIKWAQKRDAGVYECQLS-TQPVRSFFVNLNVVV 85
L I+ Q DAG Y C S + L+V V
Sbjct: 63 ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQV 98
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 53.9 bits (129), Expect = 5e-09
Identities = 20/146 (13%), Positives = 32/146 (21%), Gaps = 31/146 (21%)
Query: 47 GDEWTLHIKWAQKRDAGVYECQ-----LSTQPVRSFFVNLNVVV-PTAEILGSP-DLHVD 99
G L +K + + + C ++ L V+ P + P +
Sbjct: 139 GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWP 198
Query: 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159
E S C P + G
Sbjct: 199 ENSQQTPMCQA--WGNPLPELKCLK-------------------DGTFPLPIGESVTVTR 237
Query: 160 KDSGKYSCSPSNA---DVASVYVHVL 182
G Y C + V V+VL
Sbjct: 238 DLEGTYLCRARSTQGEVTREVTVNVL 263
Score = 52.4 bits (125), Expect = 2e-08
Identities = 18/164 (10%), Positives = 42/164 (25%), Gaps = 33/164 (20%)
Query: 31 YTYTSDQRFSAIHRREGD----EWTLHIKWAQKRDAGVYECQLSTQPV-RSFFVNLNVVV 85
+ DQR + D + ++ + C + + + +
Sbjct: 39 HLALGDQRLNPTVTYGNDSFSAKASVSVTAED-EGTQRLTCAVILGNQSQETLQTVTIYS 97
Query: 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145
A + V EG+ + + C P + +
Sbjct: 98 FPAPNVILTKPEVSEGTEVTVKCEA--HPRAKVTLNGVPAQPLGP--------------- 140
Query: 146 EVTTSYLLIQQAELKDSGKYSCSPSN-------ADVASVYVHVL 182
+ LL++ + +SCS + + + VL
Sbjct: 141 ---RAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL 181
Score = 40.0 bits (93), Expect = 2e-04
Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 12/104 (11%)
Query: 83 VVVPTAEILGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVSVI 141
V+ T L SP + ++ + + CS+ P A + D+ ++ + G S
Sbjct: 1 VLPATPPQLVSPRV-LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDS-- 57
Query: 142 TEKGEVTTSYLLIQQAELKDSGKYSCSPSNADV---ASVYVHVL 182
+ + AE + + + +C+ + V +
Sbjct: 58 -----FSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIY 96
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 50.5 bits (121), Expect = 8e-09
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 16/90 (17%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
V G + L C ++ + I W ++ + + +T + +
Sbjct: 12 SFLVHPGDLLQLRCRLR---DDVQSINWLRDGVQLA----------ESNRTRITGEEVEV 58
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHV 181
Q + DSG Y+C S+ D V+V
Sbjct: 59 QDSVPADSGLYACVTSSPSGSDTTYFSVNV 88
Score = 27.7 bits (62), Expect = 1.0
Identities = 7/35 (20%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVV 84
+ ++ + D+G+Y C S+ + + ++NV
Sbjct: 55 EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS 89
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 50.5 bits (121), Expect = 9e-09
Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 11/89 (12%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
EG+T L C + S P + W E + D R S+ + L I
Sbjct: 17 TKEASEGATATLQCEL--SKVAP--VEWKKGPETLR-DGGR--YSLKQDGTRCE---LQI 66
Query: 155 QQAELKDSGKYSCSPSNADV-ASVYVHVL 182
+ D+G+YSC A++ V L
Sbjct: 67 HDLSVADAGEYSCMCGQERTSATLTVRAL 95
Score = 31.2 bits (71), Expect = 0.086
Identities = 13/58 (22%), Positives = 17/58 (29%), Gaps = 5/58 (8%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEIL 91
R+S +G L I DAG Y C + + L V A
Sbjct: 48 RDGGRYSLKQ--DGTRCELQIHDLSVADAGEYSCMCGQERTSA---TLTVRALPARFT 100
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 50.5 bits (121), Expect = 9e-09
Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 10/89 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
DL V C + + WY + + S R IT L+I
Sbjct: 17 DLTVKAAEQAVFKCEVS---DEKVTGKWYKNGVEVR-PSKR-----ITISHVGRFHKLVI 67
Query: 155 QQAELKDSGKYSCSPSNADV-ASVYVHVL 182
+D G Y+ P + S ++ L
Sbjct: 68 DDVRPEDEGDYTFVPDGYALSLSAKLNFL 96
Score = 30.4 bits (69), Expect = 0.13
Identities = 6/25 (24%), Positives = 7/25 (28%)
Query: 44 RREGDEWTLHIKWAQKRDAGVYECQ 68
G L I + D G Y
Sbjct: 57 SHVGRFHKLVIDDVRPEDEGDYTFV 81
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 50.4 bits (121), Expect = 1e-08
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 10/91 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
++ +DEG + + P P + WY + + D +I + + + L+
Sbjct: 14 NMSIDEGRFCRMDFKVSGLPAPD--VSWYLNGRTVQSDDLH---KMIVSEKGLHS--LIF 66
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ D+G Y+C N +V + VL
Sbjct: 67 EVVRASDAGAYACVAKNRAGEATFTVQLDVL 97
Score = 32.7 bits (75), Expect = 0.019
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67
SD + E +L + + DAG Y C
Sbjct: 47 QSDDLHK-MIVSEKGLHSLIFEVVRASDAGAYAC 79
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 52.3 bits (125), Expect = 1e-08
Identities = 30/171 (17%), Positives = 58/171 (33%), Gaps = 18/171 (10%)
Query: 10 LLPTRVSWIRHRD-IHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
L TR+ W + + + + G + + I + ++ I + D G YEC
Sbjct: 25 LAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN-LSIVILALRPSDEGTYECV 83
Query: 69 LSTQPVRSFF------VNLNVVVPTAEILGSPDLHVDEGSTINLTCSIK-YSPEPPAYIF 121
+ +F V L+V D + + + CS PEP ++
Sbjct: 84 VLKYEKDAFKREHLAEVTLSVKADFPTPS-ISDFEIPTSNIRRIICSTSGGFPEP--HLS 140
Query: 122 WYHHDEVISYDSSRGGVSVITEKGEVT-TSYLLIQQAELKDSGKYSCSPSN 171
W + E ++ ++ VS E +S L + + + C
Sbjct: 141 WLENGEELNAINTT--VSQDPETELYAVSSKLDFN---MTTNHSFMCLIKY 186
Score = 38.4 bits (89), Expect = 7e-04
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 13/80 (16%)
Query: 98 VDEGSTINLTCSIKYSPEPPA--YIFWYHHDE-VISYDSSRG-------GVSVITEKGEV 147
+ L+C S E A I+W + V++ S ++ +
Sbjct: 6 KEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNL 65
Query: 148 TTSYLLIQQAELKDSGKYSC 167
+ ++I D G Y C
Sbjct: 66 S---IVILALRPSDEGTYEC 82
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 50.0 bits (120), Expect = 1e-08
Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+L V+E T TC + P A + W + S + E + L I
Sbjct: 17 NLQVEEKGTAVFTCKTE---HPAATVTWRKGLLELR-ASGK--HQPSQEGLTLR---LTI 67
Query: 155 QQAELKDSGKYSC 167
E DS Y+C
Sbjct: 68 SALEKADSDTYTC 80
Score = 30.0 bits (68), Expect = 0.18
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
+ + EG L I +K D+ Y C
Sbjct: 49 RASGKHQPSQ--EGLTLRLTISALEKADSDTYTCD 81
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 49.7 bits (119), Expect = 2e-08
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153
P VD+G + + +P + WY + + I S++ + KG L
Sbjct: 16 PAYQVDKGGRVRFVVELA---DPKLEVKWYKNGQEIR-PSTK---YIFEHKGCQRI--LF 66
Query: 154 IQQAELKDSGKYSCSPSNADV-ASVYV 179
I ++ D +Y + + ++V
Sbjct: 67 INNCQMTDDSEYYVTAGDEKCSTELFV 93
Score = 31.6 bits (72), Expect = 0.051
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 44 RREGDEWTLHIKWAQKRDAGVYECQ 68
+G + L I Q D Y
Sbjct: 57 EHKGCQRILFINNCQMTDDSEYYVT 81
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 49.7 bits (119), Expect = 2e-08
Identities = 11/88 (12%), Positives = 31/88 (35%), Gaps = 6/88 (6%)
Query: 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQA 157
+ ++K +P+P + W+++ +++ +S + L +
Sbjct: 13 PTSDHHWCIPFTVKGNPKP--ALQWFYNGAILN-ESKYICTKIHVTNHTEYHGCLQLDNP 69
Query: 158 ELKDSGKYSCSPSNA---DVASVYVHVL 182
++G Y+ N D + H +
Sbjct: 70 THMNNGDYTLIAKNEYGKDEKQISAHFM 97
Score = 27.0 bits (60), Expect = 2.0
Identities = 9/56 (16%), Positives = 14/56 (25%), Gaps = 7/56 (12%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67
P + W + IL Y T + L + + G Y
Sbjct: 31 PA-LQW--FYNGAILNESKYICTKIH----VTNHTEYHGCLQLDNPTHMNNGDYTL 79
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 50.5 bits (120), Expect = 2e-08
Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 28/114 (24%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV------- 147
+ V G+ + L I P P + W + +R + G+
Sbjct: 27 TIVVVAGNKLRLDVPISGDPAP--TVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDK 84
Query: 148 ----------------TTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
S ++ AE +D G Y+ + N D ++ V V+
Sbjct: 85 KLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138
Score = 30.9 bits (69), Expect = 0.13
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 47 GDEWTLHIKWAQKRDAGVYECQLS 70
D ++ A+K D GVY +
Sbjct: 100 KDRSIFTVEGAEKEDEGVYTVTVK 123
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 49.3 bits (118), Expect = 2e-08
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 84 VVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE 143
VV E ++ + G++ L+C + + + WY + +S SS+ +
Sbjct: 9 VVFAKEQPAHREVQAEAGASATLSCEVA---QAQTEVTWYKDGKKLS-SSSK---VRVEA 61
Query: 144 KGEVTTSYLLIQQAELKDSGKYSC 167
G L++QQA ++G+YSC
Sbjct: 62 VGCTRR--LVVQQAGQAEAGEYSC 83
Score = 31.6 bits (72), Expect = 0.047
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 44 RREGDEWTLHIKWAQKRDAGVYECQ 68
G L ++ A + +AG Y C+
Sbjct: 60 EAVGCTRRLVVQQAGQAEAGEYSCE 84
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 51.0 bits (121), Expect = 2e-08
Identities = 30/170 (17%), Positives = 54/170 (31%), Gaps = 40/170 (23%)
Query: 42 IHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVD-- 99
I D+ ++ K G+Y+C+ S + V + +
Sbjct: 41 IGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKK 100
Query: 100 --------------------------EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDS 133
G+T+ LTC P + I W H+D+ I D
Sbjct: 101 DDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCP----QYPGSEILWQHNDKNIGGDE 156
Query: 134 SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA--DVASVYVHV 181
+ L + +EL+ SG Y C P + + A+ Y+++
Sbjct: 157 DDKNIGSDE------DHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYL 200
Score = 34.1 bits (77), Expect = 0.017
Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 18/85 (21%)
Query: 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159
E ++ LTC + I W+ ++I + + +
Sbjct: 17 EDGSVLLTCD---AEAKN--ITWFKDGKMIGFLTED-------------KKKWNLGSNAK 58
Query: 160 KDSGKYSCSPSNADVASVYVHVLNG 184
G Y C S + V+ G
Sbjct: 59 DPRGMYQCKGSQNKSKPLQVYYRMG 83
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 48.9 bits (117), Expect = 3e-08
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+ V GS + + W IS S++ + +G T L +
Sbjct: 17 SVEVAAGSPAVFEAETE---RAGVKVRWQRGGSDIS-ASNK---YGLATEGTRHT--LTV 67
Query: 155 QQAELKDSGKYSC 167
++ D G Y+
Sbjct: 68 REVGPADQGSYAV 80
Score = 30.0 bits (68), Expect = 0.17
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
++ ++ EG TL ++ D G Y
Sbjct: 49 SASNKYGL--ATEGTRHTLTVREVGPADQGSYAVI 81
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 48.4 bits (116), Expect = 3e-08
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+ V G T + + EP + W + ++ S I E G+ L++
Sbjct: 14 GVEVFVGETAHFEIELS---EPDVHGQWKLKGQPLA-ASPD---CEIIEDGKKHI--LIL 64
Query: 155 QQAELKDSGKYSCSPSNA 172
+L +G+ S +N
Sbjct: 65 HNCQLGMTGEVSFQAANT 82
Score = 28.4 bits (64), Expect = 0.49
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 44 RREGDEWTLHIKWAQKRDAGVYECQ 68
+G + L + Q G Q
Sbjct: 54 IEDGKKHILILHNCQLGMTGEVSFQ 78
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 48.1 bits (115), Expect = 4e-08
Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 24/102 (23%)
Query: 89 EILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147
+I P + GST+ L C SP P + W+ ++ +++++ +
Sbjct: 5 QICVEPTSQKLMPGSTLVLQCVAVGSPIP--HYQWFKNELPLTHETKK------------ 50
Query: 148 TTSYLLIQQAELKDSGKYSCSPSN------ADVASVYVHVLN 183
++ +L+ G Y C N + + + LN
Sbjct: 51 ---LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 89
Score = 26.9 bits (60), Expect = 1.9
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 46 EGDEWTLHIKWAQKRDAGVYECQ 68
+ + + G Y C
Sbjct: 46 HETKKLYMVPYVDLEHQGTYWCH 68
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 49.9 bits (119), Expect = 4e-08
Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 10/107 (9%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D+ V EGS C ++ P+P + W+ D + +S + ++ + L I
Sbjct: 50 DMEVVEGSAARFDCKVEGYPDP--EVMWFKDDNPVK-ESRH--FQIDYDEEGNCS--LTI 102
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVLNGEYTGWSESLGTQTK 198
+ D KY+C N+ + + V G E G + +
Sbjct: 103 SEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEGEGEEDE 149
Score = 30.6 bits (69), Expect = 0.20
Identities = 8/34 (23%), Positives = 10/34 (29%), Gaps = 1/34 (2%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67
+ F I E +L I D Y C
Sbjct: 83 KESRHFQ-IDYDEEGNCSLTISEVCGDDDAKYTC 115
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 48.9 bits (116), Expect = 8e-08
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 9/85 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSR-------GGVSVITEKGEV 147
G ++ L C SP P I W+ + + S+ V + +
Sbjct: 30 SQQRWVGGSVELHCEAVGSPVP--EIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQH 87
Query: 148 TTSYLLIQQAELKDSGKYSCSPSNA 172
S + I +D+G Y C SN
Sbjct: 88 AASTISIDTLVEEDTGTYECRASND 112
Score = 32.7 bits (74), Expect = 0.038
Identities = 10/56 (17%), Positives = 15/56 (26%), Gaps = 2/56 (3%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRR--EGDEWTLHIKWAQKRDAGVYEC 67
+ W + IH + T+ I + D G YEC
Sbjct: 52 EIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYEC 107
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 47.7 bits (113), Expect = 1e-07
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 10/105 (9%)
Query: 86 PTAEILGSP-DLHVDEGSTINLTCSIKYSP--EPPAYIFWYHHDEVISYDSSRGGVSV-- 140
P + P D V G +I + + + +PP + W+ V + +
Sbjct: 3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPV-VKWFKGKWVDLSSKVGQHLQLHD 61
Query: 141 -ITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+V L I A+ +G Y C S D ++ + V
Sbjct: 62 SYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
Score = 33.4 bits (76), Expect = 0.013
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73
V W + + + + + + + + LHI AQ G Y C++ST+
Sbjct: 38 VVKWFKGKWVDLSSKVGQHLQLHDSYDR--ASKVYLFELHITDAQPAFTGSYRCEVSTKD 95
Query: 74 -VRSFFVNLNVV 84
NL V
Sbjct: 96 KFDCSNFNLTVH 107
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 48.1 bits (114), Expect = 1e-07
Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 7/94 (7%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPA-YIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY-- 151
V G I +K I W+ + + + + + Y
Sbjct: 16 GGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTF 75
Query: 152 -LLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ I +A+ +G Y C + D S + V
Sbjct: 76 EMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEV 109
Score = 35.4 bits (81), Expect = 0.004
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73
+ W + + + + + + F R + + I A+ AG Y C+++ +
Sbjct: 41 TIKWFKGKWMDLASKAGKHLQLKETFERHSR--VYTFEMQIIKAKDNFAGNYRCEVTYKD 98
Query: 74 VR-SFFVNLNVVVPT 87
S +L V T
Sbjct: 99 KFDSCSFDLEVHEST 113
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 48.7 bits (116), Expect = 1e-07
Identities = 22/131 (16%), Positives = 33/131 (25%), Gaps = 18/131 (13%)
Query: 43 HRREGDEWTLHIKWAQKRDAGVYECQLSTQPV---RSFFVNLNVVVP--TAEILGSPDLH 97
R D+ L I ++ AG Y C + S + L + P
Sbjct: 45 SSRYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPA 104
Query: 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQA 157
V G + L C + Y + Y + + I
Sbjct: 105 VSSGGDVTLQCQ---TRYGFDQFALYKEGDPAPYKNPERW----------YRASFPIITV 151
Query: 158 ELKDSGKYSCS 168
SG Y C
Sbjct: 152 TAAHSGTYRCY 162
Score = 29.0 bits (65), Expect = 0.72
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 19/93 (20%)
Query: 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145
P + P V + L C P P ++ + S ++
Sbjct: 7 PKPSLQALPSSLVPLEKPVTLRCQ---GP-PGVDLYRLE----------KLSSSRYQDQA 52
Query: 146 EVTTSYLLIQQAELKDSGKYSCSPSNADVASVY 178
L I + +G+Y CS N + S+
Sbjct: 53 V-----LFIPAMKRSLAGRYRCSYQNGSLWSLP 80
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 46.7 bits (111), Expect = 2e-07
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+ + LTC + P A + W E + +S ++ ++ V L++
Sbjct: 22 YVAAVRLERVVLTCELC---RPWAEVRWTKDGEEVV-ESPA---LLLQKEDTVRR--LVL 72
Query: 155 QQAELKDSGKYSCSPSNADV-ASVYVHV 181
+L+DSG+Y C + +V V
Sbjct: 73 PAVQLEDSGEYLCEIDDESASFTVTVTE 100
Score = 34.7 bits (80), Expect = 0.005
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 44 RREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSP 94
++E L + Q D+G Y C++ + + V P I+ S
Sbjct: 62 QKEDTVRRLVLPAVQLEDSGEYLCEIDDESASF---TVTVTEPPVRIIYSG 109
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 46.2 bits (110), Expect = 3e-07
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 20/90 (22%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
V G T+ LTC + P P I W + S L++
Sbjct: 19 GGAVAPGGTVTLTCEVPAQPSP--QIHWMKDGVPLPLPPS---------------PVLIL 61
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ +D G YSC +++ S V +
Sbjct: 62 PEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
Score = 29.3 bits (66), Expect = 0.28
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 51 TLHIKWAQKRDAGVYECQ---LSTQPVRSFFVNLNVVVP 86
L + +D G Y C S P S V+++++ P
Sbjct: 58 VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 48.3 bits (114), Expect = 4e-07
Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 10/89 (11%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152
L G ++ LTC PE A + W SR L
Sbjct: 13 RGVLTSLPGDSVTLTCPGV-EPEDNATVHWVLRKPAAGSHPSRW---------AGMGRRL 62
Query: 153 LIQQAELKDSGKYSCSPSNADVASVYVHV 181
L++ +L DSG YSC + +V++ V
Sbjct: 63 LLRSVQLHDSGNYSCYRAGRPAGTVHLLV 91
Score = 31.4 bits (70), Expect = 0.17
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 8/87 (9%)
Query: 44 RREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGST 103
R G L ++ Q D+G Y C + +P + V+L V VP E +
Sbjct: 54 RWAGMGRRLLLRSVQLHDSGNYSCYRAGRPAGT--VHLLVDVPPEEPQ---LSCFRKSPL 108
Query: 104 INLTCSIKYSPE---PPAYIFWYHHDE 127
N+ C + +
Sbjct: 109 SNVVCEWGPRSTPSLTTKAVLLVRKFQ 135
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 48.3 bits (114), Expect = 4e-07
Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 15/127 (11%)
Query: 51 TLHIKWAQKRDAGVYECQLS----TQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINL 106
TL + A +AG Y+ + V S + I +V + + L
Sbjct: 53 TLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVEL 112
Query: 107 TCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166
++K+S + + Y S+G + T T + IQ+ +G Y+
Sbjct: 113 HATVKFSGGKTPADNY-----ELHYSWSKGEDVIDT------TQDITIQEFTADKNGVYT 161
Query: 167 CSPSNAD 173
Sbjct: 162 VKVWGES 168
Score = 47.1 bits (111), Expect = 1e-06
Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 13/134 (9%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVVVPTAEIL--GSPDLHVDEGSTINLT 107
+ I+ GVY ++ + + + +++ T + V G+ I+L
Sbjct: 146 DITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLN 205
Query: 108 CSIKYS--------PEPPAYIFWYHHDE-VISYDSSRGGVSVITEKGEVTTS-YLLIQQA 157
+ P WY E +S V E +T +L + A
Sbjct: 206 YVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESA 265
Query: 158 ELKDSGKYSCSPSN 171
D+ K+ C
Sbjct: 266 TYDDTAKFWCVAKL 279
Score = 32.5 bits (73), Expect = 0.080
Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 18/78 (23%)
Query: 98 VDEGSTINLTCSIK-YSPEPPAYIF-WYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQ 155
G LT ++ P P + W + E T+ L +
Sbjct: 14 FLAGDGFTLTATVAGDEPLPSNLTYTWT-----------KDDQPH-----ENNTATLTVA 57
Query: 156 QAELKDSGKYSCSPSNAD 173
A +++G Y + + D
Sbjct: 58 DATSENAGSYKVTVQDTD 75
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 47.2 bits (112), Expect = 8e-07
Identities = 19/130 (14%), Positives = 31/130 (23%), Gaps = 18/130 (13%)
Query: 47 GDEWTLHIKWAQKRDAGVYECQLSTQPV---RSFFVNLNV--VVPTAEILGSPDLHVDEG 101
++ +I R AG Y C + S ++L V + T + P V G
Sbjct: 57 INKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISG 116
Query: 102 STINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKD 161
+ C + G + +
Sbjct: 117 EKVTFYCR---LDTATSMFLLLKEGRSSHVQRGYGK----------VQAEFPLGPVTTAH 163
Query: 162 SGKYSCSPSN 171
G Y C S
Sbjct: 164 RGTYRCFGSY 173
Score = 34.1 bits (78), Expect = 0.022
Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 10/91 (10%)
Query: 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145
P I P V + + + C A + H + +
Sbjct: 6 PKPFIWAEPHFMVPKEKQVTICCQG----NYGAVEYQLHFEGSLFAVDRP------KPPE 55
Query: 146 EVTTSYLLIQQAELKDSGKYSCSPSNADVAS 176
+ I + +G+YSC ++ S
Sbjct: 56 RINKVKFYIPDMNSRMAGQYSCIYRVGELWS 86
Score = 29.1 bits (65), Expect = 1.0
Identities = 14/107 (13%), Positives = 27/107 (25%), Gaps = 6/107 (5%)
Query: 29 GSYTYTSDQRFSAIHRREGDEW-TLHIKWAQKRDAGVYECQLSTQP----VRSFFVNLNV 83
+ + R S + R G + G Y C S S V L V
Sbjct: 130 SMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLV 189
Query: 84 -VVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVI 129
L D + + + + ++ + ++
Sbjct: 190 TGDIENTSLAPEDPTFPADTWGTYLLTTETGLQKDHALWDHTAQNLL 236
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 46.5 bits (110), Expect = 9e-07
Identities = 22/160 (13%), Positives = 44/160 (27%), Gaps = 27/160 (16%)
Query: 13 TRVSWIRHRD-IHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71
V W R + + F + L IK + D+G Y + +
Sbjct: 28 DEVRWERGSTLVAEFKRKMKPFLKSGAFEIL-----ANGDLKIKNLTRDDSGTYNVTVYS 82
Query: 72 QPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISY 131
+ +N + + E++ P ++ E S LTC + + + Y E +
Sbjct: 83 T-NGTRILNKALDLRILEMVSKPMIYW-ECSNATLTCEVLEGTDVE--LKLYQGKEHLR- 137
Query: 132 DSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
+ + + C N
Sbjct: 138 ----------------SLRQKTMSYQWTNLRAPFKCKAVN 161
Score = 41.9 bits (98), Expect = 3e-05
Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 1/88 (1%)
Query: 97 HVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY-LLIQ 155
G INL + + W +++ + + + E+ + L I+
Sbjct: 7 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIK 66
Query: 156 QAELKDSGKYSCSPSNADVASVYVHVLN 183
DSG Y+ + + + + L+
Sbjct: 67 NLTRDDSGTYNVTVYSTNGTRILNKALD 94
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 46.3 bits (110), Expect = 1e-06
Identities = 19/131 (14%), Positives = 31/131 (23%), Gaps = 18/131 (13%)
Query: 46 EGDEWTLHIKWAQKRDAGVYECQLSTQPV---RSFFVNLNV--VVPTAEILGSPDLHVDE 100
++ +I R AG Y C + S ++L V + T + P V
Sbjct: 53 RINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVIS 112
Query: 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELK 160
G + C + G + +
Sbjct: 113 GEKVTFYCR---LDTATSMFLLLKEGRSSHVQRGYGK----------VQAEFPLGPVTTA 159
Query: 161 DSGKYSCSPSN 171
G Y C S
Sbjct: 160 HRGTYRCFGSY 170
Score = 34.4 bits (79), Expect = 0.012
Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 10/91 (10%)
Query: 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145
P I P V + + + C A + H + +
Sbjct: 3 PKPFIWAEPHFMVPKEKQVTICCQG----NYGAVEYQLHFEGSLFAVDRP------KPPE 52
Query: 146 EVTTSYLLIQQAELKDSGKYSCSPSNADVAS 176
+ I + +G+YSC ++ S
Sbjct: 53 RINKVKFYIPDMNSRMAGQYSCIYRVGELWS 83
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 44.9 bits (106), Expect = 1e-06
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 10/85 (11%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPA--YIFWYHHD-----EVISYDSS---RGGVSVIT 142
P++ EGS+ L CS S A + W+ + EV + R +
Sbjct: 14 PPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASS 73
Query: 143 EKGEVTTSYLLIQQAELKDSGKYSC 167
+ L I+ D+ Y C
Sbjct: 74 RFLHDHQAELHIRDVRGHDASIYVC 98
Score = 33.4 bits (76), Expect = 0.018
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 13 TRVSWIRHRDIHILTVGSYTYTSDQR---FSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69
V+W R + V + T R ++ + LHI+ + DA +Y C++
Sbjct: 41 GSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRV 100
Query: 70 STQ 72
Sbjct: 101 EVL 103
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 47.1 bits (112), Expect = 1e-06
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 8/77 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
V EG + N C + S P + W+ D + S + + L I
Sbjct: 491 GTEVGEGQSANFYCRVIASSPP--VVTWHKDDRELK-QSVK--YMKRYNGNDYG---LTI 542
Query: 155 QQAELKDSGKYSCSPSN 171
+ + D G+Y+ N
Sbjct: 543 NRVKGDDKGEYTVRAKN 559
Score = 26.3 bits (58), Expect = 8.2
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 44 RREGDEWTLHIKWAQKRDAGVYECQ 68
R G+++ L I + D G Y +
Sbjct: 532 RYNGNDYGLTINRVKGDDKGEYTVR 556
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 46.2 bits (109), Expect = 2e-06
Identities = 28/175 (16%), Positives = 55/175 (31%), Gaps = 19/175 (10%)
Query: 9 GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEW-------TLHIKWAQKRD 61
+ ++W V + + D + + W +L + Q +
Sbjct: 34 NITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEE 93
Query: 62 AGVYECQLSTQPVRSF-FVNLNVVV-PTAEILGSPDLHVDEGSTINLTCSI-KYSPEPPA 118
AG Y C++ P+++ V L VV P + + D + + C + PE
Sbjct: 94 AGEYRCEVVVTPLKAQGTVQLEVVASPASRL--LLDQVGMKENEDKYMCESSGFYPE-AI 150
Query: 119 YIFWYHHDEVISYDSSRGGVSVITEK---GEVT---TSYLLIQQAELKDSGKYSC 167
I W + + + + T TS L + ++ Y C
Sbjct: 151 NITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQC 205
Score = 33.5 bits (76), Expect = 0.031
Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 15/95 (15%)
Query: 89 EILGSPDLHVDEGSTINLTCSIKYSPEP---PAYIFWYHHD-----EVISYDSSRGGVSV 140
E++ + + C+I YS I W+ EV ++
Sbjct: 6 EMMAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEA 65
Query: 141 ITEKGEVTTSY-------LLIQQAELKDSGKYSCS 168
V+ L + +L+++G+Y C
Sbjct: 66 FRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCE 100
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 46.4 bits (110), Expect = 2e-06
Identities = 25/141 (17%), Positives = 39/141 (27%), Gaps = 16/141 (11%)
Query: 36 DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP------VRSFFVNLNV--VVPT 87
D+ I + + ++ AG Y C+ S S V + V
Sbjct: 60 DRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRK 119
Query: 88 AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147
+L P V G + L C S + F + G V
Sbjct: 120 PSLLAHPGPLVKSGERVILQCW---SDIMFEHFFLHKEGISKDPSRLVG-----QIHDGV 171
Query: 148 TTSYLLIQQAELKDSGKYSCS 168
+ + I L +G Y C
Sbjct: 172 SKANFSIGPMMLALAGTYRCY 192
Score = 31.4 bits (71), Expect = 0.18
Identities = 20/140 (14%), Positives = 29/140 (20%), Gaps = 18/140 (12%)
Query: 37 QRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP------VRSFFVNLNV--VVPTA 88
R + I AG Y C S S +++ V
Sbjct: 161 SRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKP 220
Query: 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT 148
+ P V G ++ L+CS S +
Sbjct: 221 SLSAQPGPKVQAGESVTLSCS---SRSSYDMYHLSREGGAHERRLPAV-------RKVNR 270
Query: 149 TSYLLIQQAELKDSGKYSCS 168
T G Y C
Sbjct: 271 TFQADFPLGPATHGGTYRCF 290
Score = 30.6 bits (69), Expect = 0.33
Identities = 10/83 (12%), Positives = 18/83 (21%), Gaps = 13/83 (15%)
Query: 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145
+ P V G + L C Y + + G
Sbjct: 23 DKPFLSAWPSAVVPRGGHVTLRCH---YRHRFNNFMLYK----------EDRIHIPIFHG 69
Query: 146 EVTTSYLLIQQAELKDSGKYSCS 168
+ + +G Y+C
Sbjct: 70 RIFQESFNMSPVTTAHAGNYTCR 92
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 45.6 bits (108), Expect = 3e-06
Identities = 33/195 (16%), Positives = 57/195 (29%), Gaps = 44/195 (22%)
Query: 15 VSWIRHRD-------IHILTVGSYTYTSD---QRFSAIHRREGDEWTLHIKWAQKRDAGV 64
+ W H++ ++ + S + + ++ + D+GV
Sbjct: 34 IHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIENDSGV 93
Query: 65 YECQLSTQPVRS--FFVNLNVVVPTAEILG-------------------SPDLHVDEGST 103
Y C Q F ++VV + + +
Sbjct: 94 YYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKA 153
Query: 104 INLTCSIKYSPEPPAYIFWYHHDE------VISYDSSR-----GGVSVITEKGEVTTSYL 152
+ L C + S YIFWY +I S G S + K + L
Sbjct: 154 VTLNCLYETSWWSY-YIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYS-VNFKKAAKSVAL 211
Query: 153 LIQQAELKDSGKYSC 167
I +L+DS KY C
Sbjct: 212 TISALQLEDSAKYFC 226
Score = 42.1 bits (99), Expect = 5e-05
Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 17/89 (19%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE------VISYDSSRGGVSV------- 140
+ GS+ +TC + YI WY H E ++ YDS V +
Sbjct: 10 KSVIRQTGSSAEITC--DLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPG 67
Query: 141 --ITEKGEVTTSYLLIQQAELKDSGKYSC 167
T ++++ DSG Y C
Sbjct: 68 KYDTYGSTRKNLRMILRNLIENDSGVYYC 96
Score = 29.4 bits (66), Expect = 0.78
Identities = 9/41 (21%), Positives = 13/41 (31%)
Query: 30 SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70
R+S ++ L I Q D+ Y C L
Sbjct: 189 DEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALG 229
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 44.9 bits (106), Expect = 3e-06
Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 13/97 (13%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE------VISYDSSR----GGVSVITE 143
++ EG+ + + C+ Y +FWY + G S
Sbjct: 7 TEMTATEGAIVQINCT--YQTSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLS 64
Query: 144 KGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVH 180
+ + SYLL+++ ++KDS Y C+ + + +
Sbjct: 65 RSK-GYSYLLLKELQMKDSASYLCAVQASGGSYIPTF 100
Score = 32.2 bits (73), Expect = 0.070
Identities = 10/57 (17%), Positives = 16/57 (28%)
Query: 23 IHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFV 79
+ RFS+ R L +K Q +D+ Y C +
Sbjct: 43 TFLSYNVLDGLEEKGRFSSFLSRSKGYSYLLLKELQMKDSASYLCAVQASGGSYIPT 99
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 45.1 bits (106), Expect = 4e-06
Identities = 25/171 (14%), Positives = 47/171 (27%), Gaps = 19/171 (11%)
Query: 12 PTRVSWIRHRD---IHILTVG-SYTYTSDQRFSAIHRREGDE-----WTLHIKWAQKRDA 62
+ W+ +++ G + D L I D+
Sbjct: 36 TMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDS 95
Query: 63 GVYECQLSTQPV-RSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIK-YSPEPPAYI 120
G Y C V L V +++ D+ + I+L C + P+P I
Sbjct: 96 GKYLCYFQDGDFYEKALVELKVAALGSDL--HVDVKGYKDGGIHLECRSTGWYPQP--QI 151
Query: 121 FWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
W ++ V+ V S ++ SC+ +
Sbjct: 152 QWSNNKGENIPTVEAPVVADGVGLYAVAASVIM----RGSSGEGVSCTIRS 198
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 43.4 bits (102), Expect = 5e-06
Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 5/92 (5%)
Query: 96 LHVDEGSTINLTC-SIKYSPEPPAYIFWYHHDEVISYDS-SRGGVSVITEKGEVTTSYLL 153
+ + ++ C +P + W + V++ S V L
Sbjct: 7 VQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLR 66
Query: 154 IQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ Q ++G Y+ +N AS+ +
Sbjct: 67 LNQPTHVNNGNYTLLAANPFGQASASIMAAFM 98
Score = 28.4 bits (63), Expect = 0.95
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67
P+ + W+ + +L S+ +T +A L + + G Y
Sbjct: 30 PS-LRWLF--NGSVLNETSFIFTEFLEPAANETV--RHGCLRLNQPTHVNNGNYTL 80
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 44.5 bits (105), Expect = 5e-06
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 12/85 (14%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD-----EVISYDSSRGGVSV-----ITE 143
LHV EG + N TCS + + WY + E + + G T
Sbjct: 8 QSLHVQEGDSTNFTCS--FPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATL 65
Query: 144 KGEVTTSYLLIQQAELKDSGKYSCS 168
+ SYL I+ ++ +DS Y C+
Sbjct: 66 NTKEGYSYLYIKGSQPEDSATYLCA 90
Score = 34.5 bits (79), Expect = 0.012
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 35 SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSF 77
R SA + L+IK +Q D+ Y C +T F
Sbjct: 57 KKGRISATLNTKEGYSYLYIKGSQPEDSATYLCARNTGNQFYF 99
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 44.6 bits (105), Expect = 5e-06
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 14/86 (16%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD------EVISYDSSR-----GGVSVIT 142
L V EG + L CS ++ + W+ D ++ SS+ G ++
Sbjct: 8 AALSVPEGENLVLNCS--FTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASL 65
Query: 143 EKGEVTTSYLLIQQAELKDSGKYSCS 168
+K S L I ++ DS Y C+
Sbjct: 66 DKSS-GRSTLYIAASQPGDSATYLCA 90
Score = 33.4 bits (76), Expect = 0.034
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 35 SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73
+ R +A + TL+I +Q D+ Y C +
Sbjct: 57 TSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRPTS 95
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 44.3 bits (104), Expect = 7e-06
Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 14/86 (16%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD------EVISYDSS-----RGGVSVIT 142
L + EG L C+ Y+ P + + WY D + S G +
Sbjct: 11 QSLIILEGKNCTLQCN--YTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATL 68
Query: 143 EKGEVTTSYLLIQQAELKDSGKYSCS 168
+ S L I ++L DS Y C
Sbjct: 69 DADT-KQSSLHITASQLSDSASYICV 93
Score = 31.6 bits (71), Expect = 0.12
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 25 ILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73
+ S S+ R++A + + +LHI +Q D+ Y C +S +
Sbjct: 50 TIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYICVVSDRG 98
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 44.1 bits (104), Expect = 7e-06
Identities = 21/148 (14%), Positives = 35/148 (23%), Gaps = 23/148 (15%)
Query: 29 GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPV---RSFFVNLNVVV 85
S Q ++ I + AG Y C + S + L +
Sbjct: 41 ESPAPWDRQ----NPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTG 96
Query: 86 P--TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWY---HHDEVISYDSSRGGVSV 140
+ P V G ++ L C S P ++ S G
Sbjct: 97 AYSKPTLSALPSPLVTSGKSVTLLCQ---SRSPMDTFLLCKERAAHPLLCLRSEHG---- 149
Query: 141 ITEKGEVTTSYLLIQQAELKDSGKYSCS 168
+ + + G Y C
Sbjct: 150 ----AQQHQAEFPMSPVTSVHGGTYRCF 173
Score = 34.8 bits (80), Expect = 0.011
Identities = 14/104 (13%), Positives = 30/104 (28%), Gaps = 14/104 (13%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153
P + G+++ + C A + +E + + +
Sbjct: 12 PGSVISWGNSVTIWCQ----GTLEAREYRLDKEESPAPWDRQ------NPLEPKNKARFS 61
Query: 154 IQQAELKDSGKYSCSPSNADVASVY----VHVLNGEYTGWSESL 193
I +G+Y C + S V+ G Y+ + S
Sbjct: 62 IPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSA 105
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 42.5 bits (100), Expect = 7e-06
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 13 TRVSWIRHRDIHILTV--GSYTYTSDQRFSAIHRREGDE--WTLHIKWAQKRDAGVYECQ 68
R++W+ ++ IL S + F R +E LHI +K D G Y +
Sbjct: 34 RRITWLHTKNQKILEYNYNSTKTIFESEFK--GRVYLEENNGALHISNVRKEDKGTYYMR 91
Query: 69 LSTQPVRSFFVNLNVVVP 86
+ + + L V P
Sbjct: 92 VLRETENELKITLEVFDP 109
Score = 29.0 bits (65), Expect = 0.43
Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 8/95 (8%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE--VISYDSSRGGVSVITE-KGEV--- 147
PD++ GS + L P I W H ++ Y+ + +E KG V
Sbjct: 11 PDINAYTGSNVTLKIHKD-PLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLE 69
Query: 148 -TTSYLLIQQAELKDSGKYSCSPSNADVASVYVHV 181
L I +D G Y + + +
Sbjct: 70 ENNGALHISNVRKEDKGTYYMRVLRETENELKITL 104
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 42.7 bits (101), Expect = 1e-05
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 14/86 (16%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE------VISYDSS------RGGVSVI 141
+ V E +T+ + C + ++FWY +I DS G S+
Sbjct: 8 TSISVMEKTTVTMDCVYETQDSSY-FLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLN 66
Query: 142 TEKGEVTTSYLLIQQAELKDSGKYSC 167
+K + ++ L+I +++DS Y C
Sbjct: 67 FQKPK-SSIGLIITATQIEDSAVYFC 91
Score = 32.3 bits (74), Expect = 0.040
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 23 IHILTVGSYTYT--SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRS 76
+ ++ SY + +S ++ L I Q D+ VY C + S
Sbjct: 45 VFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRGDYGGS 100
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 43.3 bits (102), Expect = 1e-05
Identities = 17/133 (12%), Positives = 27/133 (20%), Gaps = 13/133 (9%)
Query: 42 IHRREGDEWTLHIKWAQKRDAGVYECQLSTQP----VRSFFVNLNVVV--PTAEILGSPD 95
I + + I G Y C + S + L V + P
Sbjct: 50 IPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPS 109
Query: 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQ 155
V+ G + L C S E + + +
Sbjct: 110 PVVNSGGNVTLQCD---SQVAFDGFILCKEGEDEHPQCLNSQPHA----RGSSRAIFSVG 162
Query: 156 QAELKDSGKYSCS 168
Y C
Sbjct: 163 PVSPSRRWWYRCY 175
Score = 34.0 bits (78), Expect = 0.019
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 10/83 (12%)
Query: 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145
P + P + +GS + L C + + ++ + +R +
Sbjct: 4 PKPTLWAEPGSVITQGSPVTLRCQG----GQETQEYRLYREKKTAPWITR------IPQE 53
Query: 146 EVTTSYLLIQQAELKDSGKYSCS 168
V I + +G+Y C
Sbjct: 54 LVKKGQFPIPSITWEHTGRYRCY 76
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 41.9 bits (99), Expect = 1e-05
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 14/86 (16%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE------VISYDSS------RGGVSVI 141
+ V E +T+ + C + ++FWY +I DS G S+
Sbjct: 8 TSISVMEKTTVTMDCVYETQDSSY-FLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLN 66
Query: 142 TEKGEVTTSYLLIQQAELKDSGKYSC 167
+K + ++ L+I +++DS Y C
Sbjct: 67 FQKPK-SSIGLIITATQIEDSAVYFC 91
Score = 30.0 bits (68), Expect = 0.21
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 23 IHILTVGSYTYT--SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRS 76
+ ++ SY + +S ++ L I Q D+ VY C + S
Sbjct: 45 VFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRGDYGGS 100
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A
4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D
1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D*
3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 43.5 bits (102), Expect = 1e-05
Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 13/87 (14%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD-----EVISYDSSR-----GGVSVITE 143
L V EG +L C+ S Y +WY + + S G +
Sbjct: 10 ESLSVPEGGMASLNCT--SSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLN 67
Query: 144 KGEVTTSYLLIQQAELKDSGKYSCSPS 170
K L I+ ++ DS Y C+ S
Sbjct: 68 KAS-LHVSLHIRDSQPSDSALYFCAAS 93
Score = 33.1 bits (75), Expect = 0.037
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 23 IHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73
++++ S + RF+A + +LHI+ +Q D+ +Y C S Q
Sbjct: 46 KALMSIFSDGDKKEGRFTAHLNKASLHVSLHIRDSQPSDSALYFCAASEQN 96
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 43.3 bits (102), Expect = 1e-05
Identities = 24/127 (18%), Positives = 39/127 (30%), Gaps = 17/127 (13%)
Query: 47 GDEWTLHIKWAQKRDAGVYECQLSTQPVRS-----FFVNLNVVVPTAEILGSPDLHVDEG 101
+ I AG Y+CQ R + + + + L + G
Sbjct: 61 ETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPG 120
Query: 102 STINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKD 161
I+LTCS S P F + G +S+ + + + +L
Sbjct: 121 ENISLTCS---SAHIPFDRFSLAKE---------GELSLPQHQSGEHPANFSLGPVDLNV 168
Query: 162 SGKYSCS 168
SG Y C
Sbjct: 169 SGIYRCY 175
Score = 32.5 bits (74), Expect = 0.063
Identities = 10/93 (10%), Positives = 20/93 (21%), Gaps = 8/93 (8%)
Query: 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145
P I + ++ + C + + R
Sbjct: 8 PMPFISAKSSPVIPLDGSVKIQCQ---AIREAYLTQLMIIKNSTYREIGRRLKFWNETDP 64
Query: 146 EVTTSYLLIQQAELKDSGKYSCSPSNADVASVY 178
E +I + +G+Y C Y
Sbjct: 65 E-----FVIDHMDANKAGRYQCQYRIGHYRFRY 92
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 43.5 bits (102), Expect = 1e-05
Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 14/86 (16%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE------VISYDSSR-----GGVSVIT 142
L V +G L C+ YS P ++ WY D + + G S
Sbjct: 9 QSLVVRQGENCVLQCN--YSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATL 66
Query: 143 EKGEVTTSYLLIQQAELKDSGKYSCS 168
+K S L I L D+ Y C
Sbjct: 67 DKDA-KHSTLHITATLLDDTATYFCV 91
Score = 34.3 bits (78), Expect = 0.015
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 25 ILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72
+ V TS+ R+SA ++ TLHI D Y C + +
Sbjct: 48 TVLVDQKDKTSNGRYSATLDKDAKHSTLHITATLLDDTATYFCVVGDR 95
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I
immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 43.1 bits (101), Expect = 2e-05
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 13/86 (15%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE---------VISYDSSRGGVSVITEK 144
P L + EG+ L C+ +S + W+ + + G +
Sbjct: 9 PALSLYEGADSGLRCN--FSTTMK-SVQWFQQNHRGRLITLFYLAQGTKENGRLKSTFNS 65
Query: 145 GEVTTSYLLIQQAELKDSGKYSCSPS 170
E S L I+ A+L+DSG Y C+
Sbjct: 66 KE-RYSTLHIKDAQLEDSGTYFCAAE 90
Score = 30.4 bits (68), Expect = 0.35
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 36 DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72
+ R + + TLHIK AQ D+G Y C
Sbjct: 56 NGRLKSTFNSKERYSTLHIKDAQLEDSGTYFCAAEDG 92
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 42.7 bits (100), Expect = 2e-05
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 14/90 (15%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE------VISYDSS-----RGGVSVIT 142
+ + EG + L C+ Y ++FWY ++ + G
Sbjct: 9 GLVTLTEGLPVMLNCT--YQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATL 66
Query: 143 EKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172
K ++ +L A+L DS Y C+ A
Sbjct: 67 HKSS-SSFHLQKSSAQLSDSALYYCALFLA 95
Score = 31.9 bits (72), Expect = 0.10
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 35 SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73
Q F A + + L AQ D+ +Y C L
Sbjct: 58 EHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALFLAS 96
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 42.6 bits (100), Expect = 2e-05
Identities = 15/128 (11%), Positives = 30/128 (23%), Gaps = 12/128 (9%)
Query: 46 EGDEWTLHIKWAQKRDAGVYECQLSTQPV---RSFFVNLNV--VVPTAEILGSPDLHVDE 100
++ I + AG Y C + S + L V + P V
Sbjct: 54 PKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTS 113
Query: 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELK 160
G + L C + + F + + + + + +
Sbjct: 114 GENVTLQCGSRLRFDR----FILTEEGDHKLSWTLDSQLTPSGQFQAL---FPVGPVTPS 166
Query: 161 DSGKYSCS 168
C
Sbjct: 167 HRWMLRCY 174
Score = 34.8 bits (80), Expect = 0.009
Identities = 10/93 (10%), Positives = 24/93 (25%), Gaps = 10/93 (10%)
Query: 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145
A + P + G+++ + C A + + ++
Sbjct: 4 SKATLWAEPGSVISRGNSVTIRCQ----GTLEAQEYRLVKEGSPEPWDTQN------PLE 53
Query: 146 EVTTSYLLIQQAELKDSGKYSCSPSNADVASVY 178
+ I +G+Y C + S
Sbjct: 54 PKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEP 86
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 42.6 bits (100), Expect = 2e-05
Identities = 22/88 (25%), Positives = 28/88 (31%), Gaps = 12/88 (13%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE------VISYDSSRGGVS----VITE 143
L V EG T L CS Y Y WYH +I+ I
Sbjct: 8 QSLTVWEGETAILNCS--YEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFF 65
Query: 144 KGEVTTSYLLIQQAELKDSGKYSCSPSN 171
L I ++ DS Y C+ S+
Sbjct: 66 NKREKKFSLHIADSQPGDSATYFCAASD 93
Score = 34.1 bits (78), Expect = 0.018
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 35 SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73
D RF+ + +++LHI +Q D+ Y C S
Sbjct: 57 EDGRFTIFFNKREKKFSLHIADSQPGDSATYFCAASDNR 95
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 42.7 bits (100), Expect = 2e-05
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPA-YIFWYHHDE------VISYDSSR--GGVSVITEK 144
+ +E ++L C+ +S YI WY VI +S ++ +
Sbjct: 7 NSMESNEEEPVHLPCN--HSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIA 64
Query: 145 GEVTTSYLLIQQAELKDSGKYSC 167
+ +S L++ +A L+D+ Y C
Sbjct: 65 EDRKSSTLILHRATLRDAAVYYC 87
Score = 30.3 bits (68), Expect = 0.37
Identities = 20/145 (13%), Positives = 41/145 (28%), Gaps = 18/145 (12%)
Query: 32 TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFV-------NLNVV 84
+ +++ S + TL + A RDA VY C L S+ L V
Sbjct: 52 SNVNNRMASLAIAEDRKSSTLILHRATLRDAAVYYCILPLAGGTSYGKLTFGQGTILTVH 111
Query: 85 VPTAEILGSPDLHVDEGSTINLTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITE 143
+ D S+ C + + + +V D + +
Sbjct: 112 PNIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTN--VSQSKDSDVYITDKTVLDMR---- 165
Query: 144 KGEVTTSYLLIQQAELKDSGKYSCS 168
+ + + ++C+
Sbjct: 166 ----SMDFKSNSAVAWSNKSDFACA 186
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 41.3 bits (97), Expect = 3e-05
Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGV-SVITEKGEVTTSYLL 153
DL V +G L C + P P I WY E + D ++ G + ++
Sbjct: 18 DLIVSKGEPATLNCKAEGRPTP--TIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIV 75
Query: 154 IQQAELKDSGKYSCSPSN 171
+ D G Y C N
Sbjct: 76 HGRKSRPDEGVYVCVARN 93
Score = 27.1 bits (60), Expect = 2.4
Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 7/59 (11%)
Query: 35 SDQRFSAIHRREGDEWTLHI-----KWAQKRDAGVYECQLSTQ--PVRSFFVNLNVVVP 86
+D+ HR +L + D GVY C S +L V
Sbjct: 52 TDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAA 110
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus
musculus} PDB: 3c60_A
Length = 200
Score = 42.3 bits (99), Expect = 3e-05
Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 12/88 (13%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD-----EVISYDSSRGGVSV-----ITE 143
+ + E + + C+ YS +FWY +++ ++ T
Sbjct: 8 GQVTLSENDFLFINCT--YSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATY 65
Query: 144 KGEVTTSYLLIQQAELKDSGKYSCSPSN 171
T+ +L + DS Y C+ ++
Sbjct: 66 DKGTTSFHLQKTSVQEIDSAVYYCAANS 93
Score = 31.9 bits (72), Expect = 0.090
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 35 SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSF 77
S + F A + + + L Q+ D+ VY C ++ + F
Sbjct: 57 SSRGFEATYDKGTTSFHLQKTSVQEIDSAVYYCAANSGTYQRF 99
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 42.3 bits (99), Expect = 3e-05
Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 15/98 (15%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD------EVISYDSSR-----GGVSVIT 142
L + EG + CS K S + WY + +I S+ G + V
Sbjct: 9 QALSIQEGENATMNCSYKTSIN---NLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTL 65
Query: 143 EKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVH 180
+ + +S LLI + D+ Y C+ Y+
Sbjct: 66 DTSK-KSSSLLITASRAADTASYFCATDTTSGTYKYIF 102
Score = 33.5 bits (76), Expect = 0.030
Identities = 7/45 (15%), Positives = 12/45 (26%)
Query: 35 SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFV 79
R +L I ++ D Y C T ++
Sbjct: 57 HSGRLRVTLDTSKKSSSLLITASRAADTASYFCATDTTSGTYKYI 101
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 42.6 bits (99), Expect = 3e-05
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 15/92 (16%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152
P + V G++ LTC + + A + W D+S G V + S L
Sbjct: 14 EPVVAVALGASRQLTCRLA-CADRGASVQWR------GLDTSLGAVQS-----DTGRSVL 61
Query: 153 LIQQAELKDSGKYSCSPSNADV---ASVYVHV 181
++ A L +G C S +V + V
Sbjct: 62 TVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93
Score = 32.2 bits (72), Expect = 0.077
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 4/82 (4%)
Query: 44 RREGDEWTLHIKWAQKRDAGVYECQLSTQPVR-SFFVNLNVVVPTAEILGSPDLHVDEGS 102
+ + L ++ A AG C S V L V ++ SP V
Sbjct: 53 QSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAALVPGDP 112
Query: 103 TINLTCSIK-YSPEPPAYIFWY 123
+ C+ +P P + +
Sbjct: 113 E--VACTAHKVTPVDPNALSFS 132
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune
system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A
3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A
Length = 205
Score = 42.4 bits (99), Expect = 3e-05
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 13/87 (14%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE---------VISYDSSRGGVSVITEK 144
L + EG+ L C+ + + W+ + + S G + +
Sbjct: 11 SALSLHEGTGSALRCNFTTTMR---AVQWFRKNSRGSLINLFYLASGTKENGRLKSAFDS 67
Query: 145 GEVTTSYLLIQQAELKDSGKYSCSPSN 171
E S L I+ A+L+DSG Y C+
Sbjct: 68 KE-RYSTLHIRDAQLEDSGTYFCAAEA 93
Score = 31.2 bits (70), Expect = 0.18
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 23 IHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF 78
I++ + S T + R + + TLHI+ AQ D+G Y C
Sbjct: 46 INLFYLASGT-KENGRLKSAFDSKERYSTLHIRDAQLEDSGTYFCAAEASNTNKVV 100
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 41.1 bits (96), Expect = 3e-05
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 11/100 (11%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE--VISYDSSRGGVSVITEKGEVTTS 150
+ V GS + L S PE + W++ + ++ +DS + KG V
Sbjct: 11 LVHMTVVSGSNVTLNISES-LPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLD 69
Query: 151 Y----LLIQQAELKDSGKYSC----SPSNADVASVYVHVL 182
L I + + +D+ Y N + + VL
Sbjct: 70 PQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVL 109
Score = 34.9 bits (80), Expect = 0.005
Identities = 13/90 (14%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 12 PTRVSWIRHRDIHILT-VGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70
+++W D I+ + + +F R + L+I QK D Y ++
Sbjct: 34 YKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRVL 93
Query: 71 TQPVRSFFVNLNVVVPTAEILGSPDLHVDE 100
+ + + V + + P + +++
Sbjct: 94 KKTGNEQEWKIKLQV--LDPVPKPVIKIEK 121
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 41.9 bits (98), Expect = 5e-05
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 12/104 (11%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD-----EVISYDSSR----GGVSVITEK 144
L + EG+ L C+ + + W+ + + Y +S G + +
Sbjct: 9 SALSLHEGTDSALRCNFTTTM---RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDS 65
Query: 145 GEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVLNGEYTG 188
E S L I+ A+L+DSG Y C+ ++ Y + G
Sbjct: 66 KERRYSTLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFG 109
Score = 37.2 bits (86), Expect = 0.002
Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 26/170 (15%)
Query: 15 VSWIRHRD----IHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70
V W R I + + S T + + SA +E TLHI+ AQ D+G Y C
Sbjct: 32 VQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAAD 91
Query: 71 TQPVRSFFVNLN-----------VVVPTAEILGSPDLHVDEGSTINLTCSIK-YSPEPPA 118
T + + V P ++ P + + + T N+ C +K + P+
Sbjct: 92 TWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFIMKNGT-NVACLVKDFYPK-EV 149
Query: 119 YIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168
I +++ +++ Y ++ + DS +CS
Sbjct: 150 TISLRSSKKIVE-----FDPAIVISPSG---KYSAVKLGQYGDSNSVTCS 191
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 41.9 bits (98), Expect = 5e-05
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 15/90 (16%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE------VISYDS------SRGGVSVI 141
+ V EG+++ L C YS P Y+FWY ++ Y S G
Sbjct: 17 ARVTVSEGASLQLRCKYSYSATP--YLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAE 74
Query: 142 TEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
K + ++ +L DS Y C+ S
Sbjct: 75 FSKSD-SSFHLRKASVHWSDSAVYFCAVSA 103
Score = 30.0 bits (67), Expect = 0.40
Identities = 9/42 (21%), Positives = 13/42 (30%)
Query: 29 GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70
G F A + + L D+ VY C +S
Sbjct: 61 GDPVVQGVNGFEAEFSKSDSSFHLRKASVHWSDSAVYFCAVS 102
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response,
immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1
PDB: 1h5b_C 1h5b_B
Length = 113
Score = 40.0 bits (94), Expect = 7e-05
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 12/83 (14%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD-----EVISYDSS----RGGVSVITEK 144
L + EG+ L C+ ++ + W+ + + Y +S G + +
Sbjct: 9 SALSLHEGTDSALRCN--FTTTMR-SVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDS 65
Query: 145 GEVTTSYLLIQQAELKDSGKYSC 167
S L I+ A+L+DSG Y C
Sbjct: 66 ERARYSTLHIRDAQLEDSGTYFC 88
Score = 26.5 bits (59), Expect = 3.0
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 36 DQRFSA-IHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72
+ R + TLHI+ AQ D+G Y C
Sbjct: 56 NGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAAEAS 93
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 41.0 bits (96), Expect = 7e-05
Identities = 22/145 (15%), Positives = 33/145 (22%), Gaps = 18/145 (12%)
Query: 32 TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP------VRSFFVNLNV-- 83
+ R H + I + AG Y C S S +++ +
Sbjct: 45 MFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIG 104
Query: 84 VVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE 143
+ + P V G + L+CS S E G
Sbjct: 105 LYEKPSLSAQPGPTVLAGENVTLSCS---SRSSYDMYHLSREGEAHERRLPAG------- 154
Query: 144 KGEVTTSYLLIQQAELKDSGKYSCS 168
T G Y C
Sbjct: 155 PKVNGTFQADFPLGPATHGGTYRCF 179
Score = 30.6 bits (69), Expect = 0.22
Identities = 13/79 (16%), Positives = 19/79 (24%), Gaps = 8/79 (10%)
Query: 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTT 149
+L P V T+ L C S + + G K
Sbjct: 11 LLAHPGPLVKSEETVILQCW---SDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKAN--- 64
Query: 150 SYLLIQQAELKDSGKYSCS 168
I + +G Y C
Sbjct: 65 --FSISRMTQDLAGTYRCY 81
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 39.4 bits (91), Expect = 9e-05
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELK 160
G+T+ LTC E I W H+D+ I D G L + +EL+
Sbjct: 21 GTTVILTCPQYPGSE----ILWQHNDKNIGGDEDDK------NIGSDEDHLSLKEFSELE 70
Query: 161 DSGKYSCSPSNA--DVASVYVHV 181
SG Y C P + + A+ Y+++
Sbjct: 71 QSGYYVCYPRGSKPEDANFYLYL 93
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 39.4 bits (92), Expect = 1e-04
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 17/90 (18%)
Query: 94 PDLHVDEGSTINLTCSIKYSPE----PPAYIFWY------------HHDEVISYDSSRGG 137
++ GS + + C Y + WY D + RG
Sbjct: 8 KNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGR 67
Query: 138 VSVITEKGEVTTSYLLIQQAELKDSGKYSC 167
++ LL++ + +DSG Y+
Sbjct: 68 AELMGNMDH-KVCNLLLKDLKPEDSGTYNF 96
Score = 29.4 bits (66), Expect = 0.36
Identities = 8/66 (12%), Positives = 14/66 (21%), Gaps = 6/66 (9%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQ------RFSAIHRREGDEWTLHIKWAQKRDAGVY 65
W V R + + L +K + D+G Y
Sbjct: 35 GITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTY 94
Query: 66 ECQLST 71
+
Sbjct: 95 NFRFEI 100
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 39.2 bits (91), Expect = 1e-04
Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 9/103 (8%)
Query: 84 VVPTAEIL-GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVIT 142
TA ++ G D+ V +G + + S W+ + E + + G V
Sbjct: 5 SSGTARLVAGLEDVQVYDGEDAVFSLDL--STIIQ--GTWFLNGEELKSNEPEGQVEPGA 60
Query: 143 EKGEV----TTSYLLIQQAELKDSGKYSCSPSNADVASVYVHV 181
+ + L++ + +DSG S + +
Sbjct: 61 LRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGVQDSAALTI 103
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 40.4 bits (94), Expect = 2e-04
Identities = 19/148 (12%), Positives = 41/148 (27%), Gaps = 19/148 (12%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF------------VNLNVVV 85
RFSA +L I+ ++ D+ +Y C S + NV
Sbjct: 90 RFSA-ECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFP 148
Query: 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145
P + + + L C + W+ + + + + +
Sbjct: 149 PEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPA 208
Query: 146 EV-----TTSYLLIQQAELKDSGK-YSC 167
+S L + ++ + C
Sbjct: 209 LNDSRYALSSRLRVSATFWQNPRNHFRC 236
>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR
complex, immune system; 2.50A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D
Length = 211
Score = 40.1 bits (93), Expect = 2e-04
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 14/90 (15%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE------VISYDSS------RGGVSVI 141
++ V E + L C + Y+FWY +I +S G S
Sbjct: 11 TEISVVEKEDVTLDCVYETRDTTY-YLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWN 69
Query: 142 TEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
+K ++ I +++ DS Y C+ S
Sbjct: 70 FQKST-SSFNFTITASQVVDSAVYFCALSG 98
Score = 30.4 bits (68), Expect = 0.28
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 29 GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72
R+S ++ + I +Q D+ VY C LS
Sbjct: 56 FDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAVYFCALSGF 99
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 37.9 bits (87), Expect = 4e-04
Identities = 21/93 (22%), Positives = 29/93 (31%), Gaps = 5/93 (5%)
Query: 86 PTAEILGSP-DLHVDEGSTINLTCSIKYSPEPPAY-IFWY--HHDEVISYDSSRGGVSVI 141
PT L P + V+ G + + P I W+ E+ S +R
Sbjct: 11 PTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKES 70
Query: 142 TEKGE-VTTSYLLIQQAELKDSGKYSCSPSNAD 173
V T L I + L D G Y D
Sbjct: 71 HNSASNVYTVELHIGKVVLGDRGYYRLEVKAKD 103
Score = 34.4 bits (78), Expect = 0.007
Identities = 11/78 (14%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 10 LLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69
+ W + + + + + ++ + ++ LHI D G Y ++
Sbjct: 42 PDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVY--TVELHIGKVVLGDRGYYRLEV 99
Query: 70 STQ-PVRSFFVNLNVVVP 86
+ S N++V P
Sbjct: 100 KAKDTCDSCGFNIDVEAP 117
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 39.2 bits (91), Expect = 4e-04
Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 16/144 (11%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS-----------TQPVRSFFVNLNVVVP 86
RFS + + +++ + D+ +Y C S + NV P
Sbjct: 64 RFSV-QQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPP 122
Query: 87 TAEILGSPDLHVDEGSTINLTCSI-KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145
+ + L C + P+ + W+ + + + S +
Sbjct: 123 KVSLFEPSKAEIANKQKATLVCLARGFFPDHVE-LSWWVNGKEVHSGVSTDPQAYKESNY 181
Query: 146 EVT-TSYLLIQQAELKDSGK-YSC 167
+ +S L + + + C
Sbjct: 182 SYSLSSRLRVSATFWHNPRNHFRC 205
Score = 27.6 bits (61), Expect = 2.6
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 15/90 (16%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-------VISYDSSRGGVSVITE--- 143
+ ++G LTC + WY + Y+ +
Sbjct: 10 RHIIKEKGGRSVLTCIPISGHS---NVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFS 66
Query: 144 --KGEVTTSYLLIQQAELKDSGKYSCSPSN 171
+ + S + + EL+DS Y C+ S
Sbjct: 67 VQQFDDYHSEMNMSALELEDSAMYFCASSL 96
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 39.0 bits (91), Expect = 5e-04
Identities = 34/174 (19%), Positives = 50/174 (28%), Gaps = 32/174 (18%)
Query: 23 IHILTVGSYTYTS-DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRS---FF 78
+ GS + A R + ++L ++ A VY C + FF
Sbjct: 46 HYSYGAGSTEKGDIPDGYKAS-RPSQENFSLILELATPSQTSVYFCASGDLGQTNERLFF 104
Query: 79 VNLNVVVPT--------------AEILGSPD-LHVDEGSTINLTCSIKYSPEPPAYIFWY 123
+ + ++ SP L V EG T L CS Y Y WY
Sbjct: 105 GHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCS--YENSAFDYFPWY 162
Query: 124 HHD-----EVISY-----DSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167
++ D G I L I ++ DS Y C
Sbjct: 163 QQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFC 216
Score = 29.7 bits (67), Expect = 0.55
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 36 DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70
D RF+ + + +LHI +Q D+ Y C
Sbjct: 185 DGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAI 219
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 38.8 bits (90), Expect = 6e-04
Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 19/168 (11%)
Query: 15 VSWIRHRD-----IHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69
+ W R I+ G + + S +RE ++++ I DAG Y C
Sbjct: 36 IQWFRGAGPARELIYNQKEGHFPRVTTVSEST--KRENMDFSISISNITPADAGTYYCVK 93
Query: 70 STQPVRSFF-------VNLNVVVPTAEILGSPDLHVDEGSTINLTCSIK-YSPEPPAYIF 121
+ P+A ++ P T++ TC +SP
Sbjct: 94 FRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLK- 152
Query: 122 WYHHDEVISYDSSRGGVSVITEKGEVT-TSYLLIQQAELKDSGKYSCS 168
W+ + +S + V + E + S + + C
Sbjct: 153 WFKNGNELS--DFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICE 198
Score = 35.3 bits (81), Expect = 0.009
Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 17/128 (13%)
Query: 51 TLHIKWAQKRDAGVYECQ-----LSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTIN 105
T + ++ C+ L P+R NL+ + L V + +N
Sbjct: 181 TAKVVLTREDVHSQVICEVAHVTLQGDPLRGT-ANLSETIRVPPTLEVTQQPVRAENQVN 239
Query: 106 LTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE----VTTSYLLIQQAELK 160
+TC ++ + P+ + W + V R + + + S+LL+ + +
Sbjct: 240 VTCQVRKFYPQR-LQLTWLENGNVS-----RTETASTVTENKDGTYNWMSWLLVNVSAHR 293
Query: 161 DSGKYSCS 168
D K +C
Sbjct: 294 DDVKLTCQ 301
Score = 29.1 bits (65), Expect = 1.1
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 9/82 (10%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD------EVISYDSSRGGVSVITE--KG 145
+ V G + L C++ P I W+ + V+ ++E K
Sbjct: 11 KSVSVAAGESAILHCTVTSL-IPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKR 69
Query: 146 EVTTSYLLIQQAELKDSGKYSC 167
E + I D+G Y C
Sbjct: 70 ENMDFSISISNITPADAGTYYC 91
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 38.3 bits (89), Expect = 7e-04
Identities = 21/127 (16%), Positives = 36/127 (28%), Gaps = 11/127 (8%)
Query: 51 TLHIKWAQKRDAGVYECQ-----LSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTIN 105
L + C T + + N P +L P + +
Sbjct: 67 VLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVT 126
Query: 106 LTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTT----SYLLIQQAELK 160
LTC + +SP + W + + + S TT S L + + K
Sbjct: 127 LTCLARGFSP-KDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWK 185
Query: 161 DSGKYSC 167
+SC
Sbjct: 186 KGDTFSC 192
Score = 30.2 bits (68), Expect = 0.35
Identities = 12/86 (13%), Positives = 22/86 (25%), Gaps = 8/86 (9%)
Query: 86 PTAEILGSPDLHVDEGSTINLTCSIK-YSPEPPAYIFWYHHD--EVISYDSSRGGVSVIT 142
P + + GS NLTC++ W + R +
Sbjct: 4 PRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYS 63
Query: 143 EKGEVTTSYLLIQQAELKDSGKYSCS 168
+S L ++C+
Sbjct: 64 -----VSSVLPGCAEPWNHGKTFTCT 84
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 36.8 bits (85), Expect = 8e-04
Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 20/90 (22%)
Query: 96 LHVDEGSTINLTCSIKYSPEP-PAYIFWY--------HHDEVISYD--------SSRGGV 138
V+ G L CS + W +E++ D SSR +
Sbjct: 4 YKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQL 63
Query: 139 SVITEKGEVTTSYLLIQQAELKDSGKYSCS 168
KG+V+ L+I+ L D G Y C
Sbjct: 64 KGDLNKGDVS---LIIKNVTLDDHGTYCCR 90
Score = 30.3 bits (68), Expect = 0.17
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 15 VSWIRHRDIHILTVGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69
W + + + T TY R+ + +L IK D G Y C++
Sbjct: 36 CPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRI 91
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 37.9 bits (87), Expect = 9e-04
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 18/73 (24%)
Query: 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELK 160
G+++ LTC + + W + + + + +L +E++
Sbjct: 14 GTSVELTCPLDSDEN----LKWEKNGQELPQKHDK--------------HLVLQDFSEVE 55
Query: 161 DSGKYSCSPSNAD 173
DSG Y C ++
Sbjct: 56 DSGYYVCYTPASN 68
Score = 29.8 bits (66), Expect = 0.50
Identities = 15/140 (10%), Positives = 38/140 (27%), Gaps = 24/140 (17%)
Query: 57 AQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEP 116
++ D+G Y C + ++ ++ L V +A+ D+ + + +
Sbjct: 52 SEVEDSGYYVCY-TPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDD-------AKKD 103
Query: 117 PAYIFWYHHDEVISYDSSRGGVSVITE----------------KGEVTTSYLLIQQAELK 160
+ + + G V + T + +
Sbjct: 104 GSQTNKAKNLVQVDGSRGDGSVLLTCGLTDKTIKWLKDGSIISPLNATKNTWNLGNNAKD 163
Query: 161 DSGKYSCSPSNADVASVYVH 180
G Y C + + V+
Sbjct: 164 PRGTYQCQGAKETSNPLQVY 183
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 38.6 bits (89), Expect = 0.001
Identities = 18/144 (12%), Positives = 34/144 (23%), Gaps = 12/144 (8%)
Query: 29 GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTA 88
G T T ++ AI + + + + G + +
Sbjct: 114 GDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRI-- 171
Query: 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT 148
++ V+ G CS W +V V
Sbjct: 172 -----QNVEVNAGQFATFQCSAIGRT-VAGDRLWLQGIDVRDAPLKEIKV----TSSRRF 221
Query: 149 TSYLLIQQAELKDSGKYSCSPSNA 172
+ + +D+GKY C
Sbjct: 222 IASFNVVNTTKRDAGKYRCMIRTE 245
Score = 27.8 bits (61), Expect = 3.3
Identities = 9/61 (14%), Positives = 17/61 (27%)
Query: 11 LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70
+ G + + + + ++ KRDAG Y C +
Sbjct: 184 FQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR 243
Query: 71 T 71
T
Sbjct: 244 T 244
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain,
membrane, transmembrane, receptor; 1.60A {Mus musculus}
PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 36.6 bits (85), Expect = 0.001
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 36 DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73
D RF I ++ ++I ++ D+G+Y C +
Sbjct: 59 DARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLH 96
Score = 30.8 bits (70), Expect = 0.10
Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 15/92 (16%)
Query: 93 SPD-LHVDEGSTINLTCSIKYSPEPPAYIF-WYHH------DEVISYDSSRGGVSV---- 140
P L V EG+ TCS S + W ++ ++ +
Sbjct: 5 YPAWLTVSEGANATFTCS--LSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARF 62
Query: 141 -ITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
I + ++ I DSG Y C +
Sbjct: 63 QIIQLPNRHDFHMNILDTRRNDSGIYLCGAIS 94
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 37.8 bits (88), Expect = 0.001
Identities = 24/141 (17%), Positives = 47/141 (33%), Gaps = 18/141 (12%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF------VNLNVVVPTAEIL 91
RF+ G ++TL I + D G+Y C + +F + PT I
Sbjct: 103 RFTG--SGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIF 160
Query: 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTT-- 149
P ++ C + + W + + G ++ T++ +
Sbjct: 161 P-PSSEQLTSGGASVVCFLNNFYPKDINVKWK----IDGSERQNGVLNSWTDQDSKDSTY 215
Query: 150 ---SYLLIQQAELKDSGKYSC 167
S L + + E + Y+C
Sbjct: 216 SMSSTLTLTKDEYERHNSYTC 236
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 36.1 bits (83), Expect = 0.001
Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 19/90 (21%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWY--------HHDEVISYD--------SSRGG 137
+ G + L C + W +I + +SR
Sbjct: 5 TAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQ 64
Query: 138 VSVITEKGEVTTSYLLIQQAELKDSGKYSC 167
+ +G V+ L I+ + D G Y C
Sbjct: 65 LKGNISEGNVS---LTIENTVVGDGGPYCC 91
Score = 28.8 bits (64), Expect = 0.60
Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 1/55 (1%)
Query: 15 VSWIRHRDIHILTVGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
I T G T+ + R+ +L I+ D G Y C
Sbjct: 38 CRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTVVGDGGPYCCV 92
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 36.0 bits (83), Expect = 0.002
Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 22/92 (23%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAY-IFWY--------HHDEVISYD--------SSRG 136
++ G + L C+ YS W + +I + SSR
Sbjct: 5 VEVKGVVGHPVTLPCT--YSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRY 62
Query: 137 GVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168
+ +G+V+ L I+ + DSG Y C
Sbjct: 63 NLKGHISEGDVS---LTIENSVESDSGLYCCR 91
Score = 33.0 bits (75), Expect = 0.019
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Query: 12 PTRVSWIR-------HRDIHILTVGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAG 63
T W R ++ I T G TY R++ + +L I+ + + D+G
Sbjct: 27 ITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESDSG 86
Query: 64 VYECQLSTQPVRS-FFVNLNVVVPTA 88
+Y C++ + V ++ V
Sbjct: 87 LYCCRVEIPGWFNDQKVTFSLQVKPE 112
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 37.3 bits (86), Expect = 0.002
Identities = 22/144 (15%), Positives = 34/144 (23%), Gaps = 18/144 (12%)
Query: 33 YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP------VRSFFVNLNVVVP 86
+ H + I + AG Y C S S +++ +
Sbjct: 45 FKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGL 104
Query: 87 TAE--ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK 144
+ + P V G ++ L+CS S E S G
Sbjct: 105 YEKPSLSAQPGPTVLAGESVTLSCS---SRSSYDMYHLSREGEAHERRFSAG-------P 154
Query: 145 GEVTTSYLLIQQAELKDSGKYSCS 168
T G Y C
Sbjct: 155 KVNGTFQADFPLGPATHGGTYRCF 178
Score = 30.3 bits (68), Expect = 0.38
Identities = 13/79 (16%), Positives = 19/79 (24%), Gaps = 8/79 (10%)
Query: 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTT 149
+L P V T+ L C S + + + G K
Sbjct: 10 LLAHPGPLVKSEETVILQCW---SDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKAN--- 63
Query: 150 SYLLIQQAELKDSGKYSCS 168
I +G Y C
Sbjct: 64 --FSIGPMMQDLAGTYRCY 80
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 37.1 bits (84), Expect = 0.004
Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 11/113 (9%)
Query: 55 KWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSP 114
+++ + ++ + V P G T L CS K
Sbjct: 502 SPPTATCVALHQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQK--- 558
Query: 115 EPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167
A +FW + V+ +S + ++ K LLI DSG Y C
Sbjct: 559 SNLARVFWKFQNGVLKAESPKY--GLMGRKN------LLIFNLSEGDSGVYQC 603
Score = 27.4 bits (59), Expect = 4.0
Identities = 20/104 (19%), Positives = 31/104 (29%), Gaps = 22/104 (21%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC------ 67
RV W + Y + L I + D+GVY+C
Sbjct: 563 RVFWKFQNGVLKAESPKYGLMGRK-------------NLLIFNLSEGDSGVYQCLSEERV 609
Query: 68 --QLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCS 109
+ Q V + + VVP + + + EGS I
Sbjct: 610 KNKTVFQVVAKHVLEVK-VVPKPVVAPTLSVVQTEGSRIATKVL 652
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 35.0 bits (81), Expect = 0.004
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVISYDSSRGGVSVITEKGEVTTSY 151
+ + G ++ + C ++ + WY E S+GG V T +
Sbjct: 8 RSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFS 67
Query: 152 LLIQQAELKDSGKYSC 167
L I ++D G Y C
Sbjct: 68 LRINDLTVEDGGTYRC 83
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 36.2 bits (83), Expect = 0.005
Identities = 28/180 (15%), Positives = 50/180 (27%), Gaps = 26/180 (14%)
Query: 13 TRVSWIRHRDIHILTVGSYTYTSDQ---------RFSAIHRREGDEWTLHIKWAQKRDAG 63
T + W R Y + RF A R EG TL I+ ++ D+
Sbjct: 55 TALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFA-VRPEGSVSTLKIQRTERGDSA 113
Query: 64 VYECQLSTQPVRSFFV----------NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYS 113
VY C S +F NV P + + + L C
Sbjct: 114 VYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGF 173
Query: 114 PEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-----TTSYLLIQQAELKDSGK-YSC 167
+ W+ + + + + + +S L + ++ + C
Sbjct: 174 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRC 233
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune
system/receptor, immune system/receptor/complex, TCR,
MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D
2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D
Length = 215
Score = 35.7 bits (82), Expect = 0.005
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 13/84 (15%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD-----EVISYDSSRGGVSV-----ITE 143
L + EG + + C+ S + WY + ++ + G V
Sbjct: 9 QFLSIQEGENLTVYCN--SSSVFS-SLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQF 65
Query: 144 KGEVTTSYLLIQQAELKDSGKYSC 167
S L I A+ D+G Y C
Sbjct: 66 GDARKDSSLHITAAQPGDTGLYLC 89
Score = 34.6 bits (79), Expect = 0.014
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 35 SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF 78
+R + + +LHI AQ D G+Y C + F
Sbjct: 57 KLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAGSQGNLIF 100
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 34.8 bits (80), Expect = 0.005
Identities = 23/128 (17%), Positives = 38/128 (29%), Gaps = 35/128 (27%)
Query: 81 LNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPE------------------PPAYIFW 122
L++ P I +G T L C SPE I
Sbjct: 6 LSITTPEEMIE------KAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIIL 59
Query: 123 YHHDEVISYDSS--RGGVSVITE---KGEVTTSYLLIQQAELKDSGKYSC---SPSNADV 174
Y D++ +G V + G+ + + + +L D G Y C
Sbjct: 60 YSGDKIYDDYYPDLKGRVHFTSNDLKSGDAS---INVTNLQLSDIGTYQCKVKKAPGVAN 116
Query: 175 ASVYVHVL 182
+++ VL
Sbjct: 117 KKIHLVVL 124
Score = 27.9 bits (62), Expect = 1.5
Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVVV 85
++++ Q D G Y+C++ P V + ++L V+V
Sbjct: 90 SINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 125
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 35.7 bits (82), Expect = 0.005
Identities = 23/177 (12%), Positives = 46/177 (25%), Gaps = 26/177 (14%)
Query: 15 VSWIRHRD------IHILTVGSYTYTSD--QRFSAIHRREGDEWTLHIKWAQKRDAGVYE 66
+ W R IH T D + A R ++++L ++ A VY
Sbjct: 30 MYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKA-SRPSQEQFSLILELATPSQTSVYF 88
Query: 67 CQLSTQPVRSFF-------------VNLNVVVPTAEILGSPDLHVDEGSTINLTCSIK-Y 112
C V P + + L C + +
Sbjct: 89 CASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGF 148
Query: 113 SPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT-TSYLLIQQAELKDSGK-YSC 167
P+ + W+ + + + S + +S L + + + C
Sbjct: 149 FPD-HVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRC 204
>2z35_A T-cell receptor alpha-chain; immune receptor, immune system;
2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A
Length = 112
Score = 34.5 bits (80), Expect = 0.006
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 35 SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72
S + F A + +E + L Q+ D+ VY C LS
Sbjct: 57 SSRGFEATYNKEATSFHLQKASVQESDSAVYYCALSEN 94
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2,
alzheimer'S disease, immunotherapies, APP, immune
system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B*
1h3p_L
Length = 252
Score = 35.4 bits (82), Expect = 0.007
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 10/137 (7%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSF------FVNLNVVVPTAEIL 91
RFS G ++TL I + D GVY C ++ +F + PT I
Sbjct: 99 RFSG--SGSGTDFTLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIF 156
Query: 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT-TS 150
P ++ C + + W ++ + +S
Sbjct: 157 P-PSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSS 215
Query: 151 YLLIQQAELKDSGKYSC 167
L + + E + Y+C
Sbjct: 216 TLTLTKDEYERHNSYTC 232
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 34.5 bits (79), Expect = 0.009
Identities = 26/121 (21%), Positives = 33/121 (27%), Gaps = 28/121 (23%)
Query: 81 LNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPA---YIFWYHHDEVISYDSSRGG 137
V+ P I G L C SP A + WY R G
Sbjct: 7 FRVIGPGHPIR------ALVGDEAELPCR--ISPGKNATGMEVGWYRSPFSRVVHLYRNG 58
Query: 138 VSVITE-----KGEVTTSY---------LLIQQAELKDSGKYSC---SPSNADVASVYVH 180
E +G L IQ D G Y+C S + A+V +
Sbjct: 59 KDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELK 118
Query: 181 V 181
V
Sbjct: 119 V 119
Score = 29.9 bits (67), Expect = 0.27
Identities = 19/94 (20%), Positives = 24/94 (25%), Gaps = 12/94 (12%)
Query: 8 KGLLPTRVSWIRHRD---IHILTVG-SYTYTSDQRFS------AIHRREGDEWTLHIKWA 57
K V W R +H+ G + EG L I+
Sbjct: 34 KNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGK-VALRIQNV 92
Query: 58 QKRDAGVYECQLSTQPV-RSFFVNLNVVVPTAEI 90
+ D G Y C V L V P I
Sbjct: 93 RFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWI 126
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 33.1 bits (75), Expect = 0.010
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 18/73 (24%)
Query: 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELK 160
G+++ LTC + + W + + + + +L +E++
Sbjct: 14 GTSVELTCPLDSDEN----LKWEKNGQEL--------------PQKHDKHLVLQDFSEVE 55
Query: 161 DSGKYSCSPSNAD 173
DSG Y C ++
Sbjct: 56 DSGYYVCYTPASN 68
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain,
variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 116
Score = 33.8 bits (78), Expect = 0.011
Identities = 23/88 (26%), Positives = 30/88 (34%), Gaps = 14/88 (15%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE------VISYDSSR--GGVSV---- 140
SPD V GS + L C+ P +FWY V D SR G
Sbjct: 7 SPDQTVASGSEVVLLCTYDTVYSNP-DLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRF 65
Query: 141 -ITEKGEVTTSYLLIQQAELKDSGKYSC 167
+ +L+I +DS Y C
Sbjct: 66 SVKHILTQKAFHLVISPVRTEDSATYYC 93
Score = 27.6 bits (62), Expect = 1.6
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 25 ILTVGSYTYTSD---QRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFV 79
S + +D RFS H + L I + D+ Y C + P +
Sbjct: 48 FYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDSATYYCAFTLPPPTDKLI 105
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 34.0 bits (78), Expect = 0.011
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 36 DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73
D RF I ++ ++I ++ D+G+Y C +
Sbjct: 69 DARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLH 106
Score = 33.6 bits (77), Expect = 0.018
Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 14/86 (16%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIF-WYHH------DEVISYDSSR--GGVS---VI 141
L V EG+ TCS S + W ++ ++ + I
Sbjct: 17 AWLTVSEGANATFTCS--LSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQI 74
Query: 142 TEKGEVTTSYLLIQQAELKDSGKYSC 167
+ ++ I DSG Y C
Sbjct: 75 IQLPNRHDFHMNILDTRRNDSGIYLC 100
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 33.4 bits (76), Expect = 0.014
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 19/86 (22%)
Query: 98 VDEGSTINLTCSIKYSPEPPAYIFWY--------HHDEVISYD--------SSRGGVSVI 141
G + L C + + W + E++ D S++ +
Sbjct: 8 GFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGK 67
Query: 142 TEKGEVTTSYLLIQQAELKDSGKYSC 167
+ GEV+ L I DSG Y C
Sbjct: 68 VQFGEVS---LTISNTNRGDSGVYCC 90
Score = 30.7 bits (69), Expect = 0.12
Identities = 12/76 (15%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 15 VSWIRHRDIHILTVGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73
+ + T G+ +++ + + + E +L I + D+GVY C++
Sbjct: 37 CPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFGEVSLTISNTNRGDSGVYCCRIEVPG 96
Query: 74 VRSFF-VNLNVVVPTA 88
+ N+ + + A
Sbjct: 97 WFNDVKKNVRLELRRA 112
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 34.4 bits (79), Expect = 0.014
Identities = 25/179 (13%), Positives = 46/179 (25%), Gaps = 39/179 (21%)
Query: 13 TRVSWIRHRD-------IHILTVGSYTYTSD---QRFSAIHRREGDEWTLHIKWAQKRDA 62
T + W R TY +F I+ TL + A D+
Sbjct: 31 TTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFL-INHASLTLSTLTVTSAHPEDS 89
Query: 63 GVYECQLSTQPVRSFFV------------NLNVVVPTAEILGSPDLHVDEGSTINLTCSI 110
Y C T NV P + + + L C
Sbjct: 90 SFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLA 149
Query: 111 K-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168
+ P+ + W+ + + + V T +++ + +Y+ S
Sbjct: 150 TGFYPD-HVELSWWVNGKEVH--------------SGVCTDPQPLKEQPALNDSRYALS 193
Score = 27.1 bits (60), Expect = 4.6
Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 18/91 (19%)
Query: 93 SPDLHVDEGSTINLTCS-IKYSPEPPAYIFWYHHD-----EVISYDSSRGGVSV------ 140
+ G+++ + C + + +FWY +++ + +
Sbjct: 8 PSWVISKSGTSVKIECRSLDFQAT---TMFWYRQFPKQSLMLMATSNEGSKATYEQGVEK 64
Query: 141 ---ITEKGEVTTSYLLIQQAELKDSGKYSCS 168
+ +T S L + A +DS Y CS
Sbjct: 65 DKFLINHASLTLSTLTVTSAHPEDSSFYICS 95
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 33.7 bits (76), Expect = 0.015
Identities = 18/115 (15%), Positives = 32/115 (27%), Gaps = 28/115 (24%)
Query: 83 VVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEP-PAYIFWY-----HHDEVISYDSSRG 136
+ V T ++ V G T+ L CS + + + P I W + +
Sbjct: 5 MTVRTTH----TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNW 60
Query: 137 G--VSVITEKGEVTTSY----------------LLIQQAELKDSGKYSCSPSNAD 173
E S+ L + +D G+Y C +
Sbjct: 61 QGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWS 115
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 34.5 bits (79), Expect = 0.015
Identities = 24/180 (13%), Positives = 44/180 (24%), Gaps = 39/180 (21%)
Query: 13 TRVSWIRHRD-------IHILTVGSYTYTSD---QRFSAIHRREGDEWTLHIKWAQKRDA 62
T + W R TY +F I+ TL + A D+
Sbjct: 54 TTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFL-INHASLTLSTLTVTSAHPEDS 112
Query: 63 GVYECQLSTQPVRSFF--------------VNLNVVVPTAEILGSPDLHVDEGSTINLTC 108
Y C + NV P + + + L C
Sbjct: 113 SFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVC 172
Query: 109 SIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168
+ W+ + + + V+T +++ + +YS S
Sbjct: 173 LATGFYPDHVELSWWVNGKEVH--------------SGVSTDPQPLKEQPALNDSRYSLS 218
Score = 26.8 bits (59), Expect = 5.5
Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 16/95 (16%)
Query: 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHD-----EVISYDSSRGGVSV---------ITE 143
G+++ + C +FWY +++ + + +
Sbjct: 36 SKSGTSVKIECRSLDFQAT--TMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLIN 93
Query: 144 KGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVY 178
+T S L + A +DS Y CS + +
Sbjct: 94 HASLTLSTLTVTSAHPEDSSFYICSARDLTSGANN 128
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 34.5 bits (79), Expect = 0.019
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 1/85 (1%)
Query: 93 SPDLHVDEGSTINLTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY 151
P + T +TC + S E P F ++ D V +++ S
Sbjct: 256 KPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSV 315
Query: 152 LLIQQAELKDSGKYSCSPSNADVAS 176
L + + + +Y C SN + +
Sbjct: 316 LTVLHQDWLNGKEYKCKVSNKALPA 340
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 34.3 bits (78), Expect = 0.020
Identities = 21/167 (12%), Positives = 45/167 (26%), Gaps = 20/167 (11%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQ---RFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
+++W+ D ++ V T ++ Q S L + Y CQ
Sbjct: 40 TIQITWLE--DGQVMDVDLSTASTTQEGELASTQS-------ELTLSQKHWLSDRTYTCQ 90
Query: 69 -----LSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIK--YSPEPPAYIF 121
+ + + N +A + + + +TC + + +
Sbjct: 91 VTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLT 150
Query: 122 WYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168
W S+ TS L + + + Y C
Sbjct: 151 WSRASGKPVNHST-RKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCR 196
Score = 33.5 bits (76), Expect = 0.042
Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 3/76 (3%)
Query: 93 SPDLHVDEGSTINLTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY 151
S D TI L C + Y+P I W +V+ + + T S
Sbjct: 16 SCDGGGHFPPTIQLLCLVSGYTPGT-IQITWLEDGQVMD-VDLSTASTTQEGELASTQSE 73
Query: 152 LLIQQAELKDSGKYSC 167
L + Q Y+C
Sbjct: 74 LTLSQKHWLSDRTYTC 89
Score = 32.3 bits (73), Expect = 0.079
Identities = 19/125 (15%), Positives = 42/125 (33%), Gaps = 10/125 (8%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFFV------NLNVVVPTAEILGSPDLHVDEGSTI 104
TL + + Y+C+++ + + + P +P+
Sbjct: 179 TLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPE-WPGSRDKR 237
Query: 105 NLTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTTSYLLIQQAELKDS 162
L C I+ + PE + W H++ + T+ S L + +AE +
Sbjct: 238 TLACLIQNFMPED-ISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQK 296
Query: 163 GKYSC 167
++ C
Sbjct: 297 DEFIC 301
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 33.0 bits (75), Expect = 0.022
Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73
+ + + + T RF+ + +T+ + ++ D+G Y C++
Sbjct: 48 KEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRPS 107
Query: 74 VRSFF--VNLNVVV 85
S V +VV
Sbjct: 108 DNSVSKSVRFYLVV 121
Score = 30.7 bits (69), Expect = 0.13
Identities = 18/98 (18%), Positives = 28/98 (28%), Gaps = 14/98 (14%)
Query: 96 LHVDEGSTINLTCSIKYSPEPPAY--IFWYHH------DEVISYDSSRGGVS----VITE 143
L G T+ + C Y P Y W +++ R I +
Sbjct: 20 LQSVAGQTLTVRCQ--YPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWD 77
Query: 144 KGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHV 181
+ + + +DSG Y C SV V
Sbjct: 78 DPDAGFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSV 115
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 32.5 bits (74), Expect = 0.024
Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 14/87 (16%)
Query: 92 GSPDLHVDEGSTINLTCSIKYSPE-PPAYIFWYHH------DEVISYDSS----RGGVSV 140
+ + G ++++ C Y E +W D+++ S G VS+
Sbjct: 2 KARTVAGPVGGSLSVQCP--YEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSI 59
Query: 141 ITEKGEVTTSYLLIQQAELKDSGKYSC 167
++ + + ++ +D+G Y C
Sbjct: 60 RDSPANLSFT-VTLENLTEEDAGTYWC 85
Score = 25.6 bits (56), Expect = 7.7
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 25 ILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF---VNL 81
I+ + R S +T+ ++ + DAG Y C + T ++ F V +
Sbjct: 43 IVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEV 102
Query: 82 NVVV 85
V V
Sbjct: 103 EVSV 106
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 33.0 bits (75), Expect = 0.025
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 23/104 (22%)
Query: 83 VVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPA--YIFWY-----HHDEVISYDSSR 135
+VV T +++ GS + L CS S W D + + ++
Sbjct: 1 IVVYT-----DREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAK 55
Query: 136 GGVSVITE---KGEVTTSY--------LLIQQAELKDSGKYSCS 168
G + K + ++I + D+G ++C
Sbjct: 56 GQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCD 99
Score = 32.6 bits (74), Expect = 0.030
Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 16/92 (17%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQ-----------RFSAIHRREGDEWTLHIKWAQKR 60
+W + + + Y Q R + + ++ I
Sbjct: 32 DISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYS 91
Query: 61 DAGVYECQLSTQP---VRSFFVNLNVV--VPT 87
D G + C + P ++ V L V VPT
Sbjct: 92 DNGTFTCDVKNPPDIVGKTSQVTLYVFEKVPT 123
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 33.0 bits (75), Expect = 0.026
Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 20/93 (21%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEP-----PAYIFWY------HHDEVISYDSS-------- 134
+ V EG +++ CS Y + P + +W+ ++ ++
Sbjct: 14 SSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEET 73
Query: 135 RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167
R ++ + + L I+ A + D+G+Y
Sbjct: 74 RDRFHLLGDPQTKNCT-LSIRDARMSDAGRYFF 105
Score = 30.7 bits (69), Expect = 0.16
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 12/88 (13%)
Query: 12 PTRVSWIR-----HRDIHILTVGSYTYTSD---QRFSAIHRREGDEWTLHIKWAQKRDAG 63
P W R + T + RF + + TL I+ A+ DAG
Sbjct: 42 PVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRDARMSDAG 101
Query: 64 VYECQLSTQPVRSFF----VNLNVVVPT 87
Y ++ ++ + +++NV T
Sbjct: 102 RYFFRMEKGNIKWNYKYDQLSVNVTALT 129
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 32.9 bits (74), Expect = 0.026
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHDEV--ISYDSSRGGVSVITEKGEVTTSYLLIQ 155
G + C +KY P + W H+ + + + E V L +
Sbjct: 26 AWTGELFKIECPVKYCVHRPN-VTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFK 84
Query: 156 QAELKDSGKYSCSPSN 171
L D+G YSCS +
Sbjct: 85 PIHLSDNGSYSCSTNF 100
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 33.1 bits (75), Expect = 0.028
Identities = 13/94 (13%), Positives = 25/94 (26%), Gaps = 21/94 (22%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE---------VISYDSSR--------- 135
+ + G ++L C + S W + V+ SS
Sbjct: 17 KKMDAELGQKVDLVCEVLGSVSQ--GCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKL 74
Query: 136 -GGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168
+ L + + ++ G Y CS
Sbjct: 75 NSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCS 108
Score = 32.7 bits (74), Expect = 0.040
Identities = 10/60 (16%), Positives = 22/60 (36%)
Query: 35 SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSP 94
+ + + R +++ L + K + G Y C + + V F + V+ P
Sbjct: 75 NSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKP 134
>3osk_A Cytotoxic T-lymphocyte protein 4; beta sandwich, homodimer,
immunoglobulin superfamily (beta S fold, receptor,
signalling, B7-1(CD80), B7-2(CD86); HET: NAG; 1.80A
{Homo sapiens} PDB: 2x44_D 1i85_C 1ah1_A* 1i8l_C* 3bx7_C
Length = 130
Score = 32.8 bits (74), Expect = 0.033
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRRE------GDEWTLHIKWAQKRDAGVYEC 67
RV+ +R D + V + TY + + G++ L I+ + D G+Y C
Sbjct: 35 RVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYIC 94
Query: 68 QLSTQPVRSFFVNL 81
++ +++ +
Sbjct: 95 KVELMYPPPYYLGI 108
Score = 26.3 bits (57), Expect = 4.8
Identities = 13/106 (12%), Positives = 23/106 (21%), Gaps = 12/106 (11%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAY-IFWY-------HHDEVISYDSSR--GGVSVIT 142
+ + C + + +Y +
Sbjct: 8 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSI 67
Query: 143 EKGEVT--TSYLLIQQAELKDSGKYSCSPSNADVASVYVHVLNGEY 186
G + L IQ D+G Y C Y+ + NG
Sbjct: 68 CTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLGIGNGTQ 113
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 33.8 bits (76), Expect = 0.036
Identities = 24/156 (15%), Positives = 40/156 (25%), Gaps = 19/156 (12%)
Query: 19 RHRDIHILTVGSYTYTSDQRFSAIHRREGDEWT------LHIKWAQKRDAGVYECQLS-T 71
+ L V S S G + W Q R +Y + S
Sbjct: 426 LDAERRKLYVSSQWEVSQVPLDLCEVYGGGCHGCLMSRDPYCGWDQGRCISIYSSERSVL 485
Query: 72 QPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISY 131
Q + + P + + + S L+C ++ A W H + V
Sbjct: 486 QSINPAEPHKECPNPKPDKAPLQKVSLAPNSRYYLSCPME---SRHATYSWRHKENVEQS 542
Query: 132 DSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167
+ L I+ + G Y C
Sbjct: 543 CEPGH---------QSPNCILFIENLTAQQYGHYFC 569
Score = 28.4 bits (62), Expect = 2.1
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 44 RREGDEWTLHIKWAQKRDAGVYECQ 68
+ L I+ + G Y C+
Sbjct: 546 GHQSPNCILFIENLTAQQYGHYFCE 570
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 32.3 bits (73), Expect = 0.037
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSF--FVNLNV 83
++ Q E + TL + D G Y C+ +T P S L V
Sbjct: 77 SAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
Score = 29.2 bits (65), Expect = 0.48
Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 27/102 (26%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPP--AYIFWYHHD------EVISYDSSRG--------- 136
P++ G T+ L C + + + W D V ++ G
Sbjct: 10 PEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPG 69
Query: 137 ----------GVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168
+ + E+ + L + ++D G Y+C
Sbjct: 70 SERLSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCE 111
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 32.0 bits (73), Expect = 0.047
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 25 ILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVV 84
+ T S R S + +T+ ++ + DAG+Y C ++ + V
Sbjct: 49 VETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWCGITK-GGLDPMFKVTVN 107
Query: 85 VPTA 88
+
Sbjct: 108 IGPV 111
Score = 31.6 bits (72), Expect = 0.054
Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 18/105 (17%)
Query: 92 GSPDLHVDEGSTINLTCSIKYSPEPPAY-IFWYHH------DEVISYDSSR-----GGVS 139
G ++ E ++ + C Y+ Y +W ++ D+S VS
Sbjct: 7 GPEEVSGQEQGSLTVQCR--YTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVS 64
Query: 140 VITEKGEVTTSYLLIQQAELKDSGKYSC---SPSNADVASVYVHV 181
+ + + + + ++ + D+G Y C + V V++
Sbjct: 65 IRDNQRDFIFT-VTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNI 108
>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus
musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A
1d9k_A*
Length = 110
Score = 31.8 bits (73), Expect = 0.048
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 36 DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71
D RF+ + + +LHI +Q D+ Y C S
Sbjct: 57 DGRFTIFFNKREKKLSLHIADSQPGDSATYFCAASA 92
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 32.9 bits (75), Expect = 0.049
Identities = 17/128 (13%), Positives = 39/128 (30%), Gaps = 18/128 (14%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFF------VNLNVVVPTAEILGSPDLHVDEGSTI 104
L I + ++C++++ + P L P + +
Sbjct: 69 ELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMA-KDKV 127
Query: 105 NLTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE----VTTSYLLIQQAEL 159
+LTC I + PE + W + + + S L +Q++
Sbjct: 128 SLTCMITDFFPED-ITVEWESNGQPAE-----NYKNTQPIMDTDGSYFVYSKLNVQKSNW 181
Query: 160 KDSGKYSC 167
+ ++C
Sbjct: 182 EAGNTFTC 189
Score = 26.7 bits (59), Expect = 4.5
Identities = 14/92 (15%), Positives = 27/92 (29%), Gaps = 14/92 (15%)
Query: 85 VPTAEILG-SPDLHVDEGSTINLTCSIK-YSPEPP-AYIFWYH-----HDEVISYDSSRG 136
V + I P + T +TC + S + P W+ H +
Sbjct: 1 VSSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQF 60
Query: 137 GVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168
+ + S L I + + ++ C
Sbjct: 61 NSTFRS------VSELPIMHQDWLNGKEFKCR 86
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 32.9 bits (75), Expect = 0.054
Identities = 19/179 (10%), Positives = 44/179 (24%), Gaps = 40/179 (22%)
Query: 13 TRVSWIRHRD-------IHILTVGSYTYTSDQ-RFSAIHRREGDEWTLHIKWAQKRDAGV 64
+SW + + + G S + L ++ A
Sbjct: 31 PWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLA--TRVTDTELRLQVANMSQGRT 88
Query: 65 YECQLSTQPVRSFFV--------------NLNVVVPTAEILGSPDLHVDEGSTINLTCSI 110
C S + NV P + + + L C
Sbjct: 89 LYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLA 148
Query: 111 K-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168
+ P+ + W+ + + + V+T +++ + +Y+ S
Sbjct: 149 TGFYPD-HVELSWWVNGKEVH--------------SGVSTDPQPLKEQPALNDSRYALS 192
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 31.8 bits (72), Expect = 0.055
Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 18/111 (16%)
Query: 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAY-IFWYHH------DEVISYDSSR-----G 136
+I G ++ E ++ + C Y Y +W ++ S
Sbjct: 5 QITGPTTVNGLERGSLTVQCV--YRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRD 62
Query: 137 GVSVITEKGEVTTSYLLIQQAELKDSGKYSC---SPSNADVASVYVHVLNG 184
VS+ + T + + ++ D+ Y C N +V V +
Sbjct: 63 RVSIKDNQKNRTFT-VTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTIDPA 112
Score = 31.0 bits (70), Expect = 0.12
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 25 ILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVV 84
+ T GS R S ++ +T+ ++ K DA Y C + V + V
Sbjct: 50 VKTSGSEQEVKRDRVSIKDNQKNRTFTVTMEDLMKTDADTYWCGIEK-TGNDLGVTVQVT 108
Query: 85 VPTA 88
+ A
Sbjct: 109 IDPA 112
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 32.6 bits (74), Expect = 0.064
Identities = 15/127 (11%), Positives = 42/127 (33%), Gaps = 16/127 (12%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFF------VNLNVVVPTAEILGSPDLHVDEGSTI 104
L I + ++C++++ + P + P + + +
Sbjct: 83 ELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQS-QV 141
Query: 105 NLTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT---TSYLLIQQAELK 160
++TC +K + P Y W + + + T + + S L +++ +
Sbjct: 142 SITCMVKGFYPPD-IYTEWKMNGQP----QENYKNTPPTMDTDGSYFLYSKLNVKKETWQ 196
Query: 161 DSGKYSC 167
++C
Sbjct: 197 QGNTFTC 203
Score = 28.0 bits (62), Expect = 2.0
Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 4/87 (4%)
Query: 85 VPTAEILG-SPDLHVDEGSTINLTCSIK--YSPEPPAYIFWYHHDEVISYDSSRGGVSVI 141
V + I + G T +TC + +P W+ D + +
Sbjct: 15 VSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQT-HAPEKQ 73
Query: 142 TEKGEVTTSYLLIQQAELKDSGKYSCS 168
+ + S L I + + + + C
Sbjct: 74 SNSTLRSVSELPIVERDWLNGKTFKCK 100
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 31.5 bits (71), Expect = 0.069
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 15/91 (16%)
Query: 7 LKGLLPTRVSWIRHRDIHILTVGSYTYTSDQ--------RFSAIHRREGDEWTLHIKWAQ 58
L+G V W+ +T+ T D R H+ GD +L I Q
Sbjct: 28 LRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPGD-VSLQINTLQ 86
Query: 59 KRDAGVYECQLSTQP------VRSFFVNLNV 83
D Y C+++ Q +R + L V
Sbjct: 87 MDDRNHYTCEVTWQTPDGNQVIRDKIIELRV 117
Score = 31.5 bits (71), Expect = 0.069
Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 18/95 (18%)
Query: 89 EILGSP-DLHVDEGSTINLTCSIKYSPEPPA---YIFWYHHD-----EVISYDSSRGGVS 139
L +P + + + C Y P + W + DS+ +
Sbjct: 3 PTLKTPESVTGTWKGDVKIQCI--YDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQ 60
Query: 140 VITEKGEVTTS-------YLLIQQAELKDSGKYSC 167
+G + S L I ++ D Y+C
Sbjct: 61 QAKYRGRLKVSHKVPGDVSLQINTLQMDDRNHYTC 95
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 32.5 bits (74), Expect = 0.085
Identities = 30/168 (17%), Positives = 48/168 (28%), Gaps = 17/168 (10%)
Query: 15 VSWIRHRDIH----ILTVGSYTYTSDQ-RFSAIHRREGDEWTLHIKWAQKRDAGVYECQ- 68
V+W + ++ + + RFS + G +L I + D Y C
Sbjct: 32 VNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSG--SKSGTSASLAISGLEAEDESDYYCAS 89
Query: 69 -LSTQPVRSFFVNLNVVVPTAEI------LGSPDLHVDEGSTINLTCSIK-YSPEPPAYI 120
S+ F V V L P + + L C I + P
Sbjct: 90 WNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVA 149
Query: 121 FWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168
W + S + +SYL + + K YSC
Sbjct: 150 -WKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQ 196
Score = 30.6 bits (69), Expect = 0.34
Identities = 24/131 (18%), Positives = 41/131 (31%), Gaps = 26/131 (19%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAE------ILGSPDLHVDEGSTI 104
L + Q + Y CQ T + + +A +P G T
Sbjct: 179 YLSLTPEQWKSHRSYSCQ-VTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTA 237
Query: 105 NLTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-------TTSYLLIQQ 156
L C +K Y P+P +S++S V T + +S + +
Sbjct: 238 ALGCLVKDYFPQPVT----------VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPS 287
Query: 157 AELKDSGKYSC 167
+ L + Y C
Sbjct: 288 SSLG-TQTYIC 297
Score = 26.7 bits (59), Expect = 7.3
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 11/82 (13%)
Query: 101 GSTINLTCSIK--YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTT----SYLLI 154
T +TC + +P WY + + E+ +T S L +
Sbjct: 334 SRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVH-----NAKTKPREQQYNSTYRVVSVLTV 388
Query: 155 QQAELKDSGKYSCSPSNADVAS 176
D +Y C SN + +
Sbjct: 389 LHQNWLDGKEYKCKVSNKALPA 410
Score = 26.3 bits (58), Expect = 8.8
Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 20/130 (15%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFF------VNLNVVVPTAEILGSPDLHVDEGSTI 104
L + D Y+C++S + + + P L + + +
Sbjct: 385 VLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMT-KNQV 443
Query: 105 NLTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-----TTSYLLIQQAE 158
+LTC +K + P + W + + + + S L + ++
Sbjct: 444 SLTCLVKGFYPSD-IAVEWESNGQPEN------NYKTTPPVLDSDGSFFLYSKLTVDKSR 496
Query: 159 LKDSGKYSCS 168
+ +SCS
Sbjct: 497 WQQGNVFSCS 506
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG,
immune system; 2.94A {Cricetulus migratorius} PDB:
3mj9_L*
Length = 213
Score = 32.0 bits (73), Expect = 0.091
Identities = 29/146 (19%), Positives = 41/146 (28%), Gaps = 27/146 (18%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQL--STQPVRSF-------FVNLNVVVPTA 88
FS G+ TL I AQ D Y CQ T F + P+
Sbjct: 60 HFSG--SNSGNMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSV 117
Query: 89 EILGSPDLHVDEGSTINLTCSI-KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE- 146
+ + L C I + P + W D + V T +
Sbjct: 118 TLFPPSSEELKTNQA-TLVCMINGFYPA-DVAVTWE-------ADGTPITQGVKTTQPSK 168
Query: 147 -----VTTSYLLIQQAELKDSGKYSC 167
+ TSYL + K + C
Sbjct: 169 SDSKYMATSYLTMTADAWKSRNTFIC 194
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 32.2 bits (73), Expect = 0.098
Identities = 11/81 (13%), Positives = 26/81 (32%), Gaps = 3/81 (3%)
Query: 93 SPDLHVDEGSTINLTCSIK-YSPEPPAYIF-WYHHDEVISYDSSRGGVSVITEKGEVTTS 150
+ + +TC + S + P W+ ++ + + + S
Sbjct: 247 KIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEV-HTAQTQTHREDYNSTLRVVS 305
Query: 151 YLLIQQAELKDSGKYSCSPSN 171
L IQ + ++ C +N
Sbjct: 306 ALPIQHQDWMSGKEFKCKVNN 326
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 31.0 bits (70), Expect = 0.098
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVP 86
S + FSA R +++ L + K + G Y C + + V F + V+
Sbjct: 70 NSSKLFSA-MRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQK 121
Score = 27.2 bits (60), Expect = 2.1
Identities = 13/94 (13%), Positives = 26/94 (27%), Gaps = 21/94 (22%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE---------VISYDSSRGGV------ 138
+ + G ++L C + S W + V+ SS +
Sbjct: 12 KKMDAELGQKVDLVCEVLGSVS--QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKL 69
Query: 139 ----SVITEKGEVTTSYLLIQQAELKDSGKYSCS 168
+ L + + ++ G Y CS
Sbjct: 70 NSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCS 103
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor,
immune system/receptor/complex, TCR, MHC,
immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E
2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D*
3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E
3kxf_E 2cde_B ...
Length = 252
Score = 31.9 bits (72), Expect = 0.11
Identities = 23/179 (12%), Positives = 51/179 (28%), Gaps = 26/179 (14%)
Query: 14 RVSWIRHRD------IHILTVGSYTYTSD--QRFSAIHRREGDEWTLHIKWAQKRDAGVY 65
+ W R I+ + + D + +S R + + + L + AQK Y
Sbjct: 33 AMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSV-SREKKESFPLTVTSAQKNPTAFY 91
Query: 66 ECQLSTQPVRSFFV-----------NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSP 114
C S++ + NV P + + + L C
Sbjct: 92 LCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFY 151
Query: 115 EPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-----TTSYLLIQQAELKDSGK-YSC 167
+ W+ + + + S + + +S L + ++ + C
Sbjct: 152 PDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRC 210
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 31.8 bits (72), Expect = 0.11
Identities = 16/127 (12%), Positives = 43/127 (33%), Gaps = 16/127 (12%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFF------VNLNVVVPTAEILGSPDLHVDEGSTI 104
L + + Y+C++S + + + P L + + + +
Sbjct: 69 VLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTK-NQV 127
Query: 105 NLTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT---TSYLLIQQAELK 160
+LTC +K + P + W + + + + + + S L + ++ +
Sbjct: 128 SLTCLVKGFYPSD-IAVEWESNGQP----ENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQ 182
Query: 161 DSGKYSC 167
+SC
Sbjct: 183 QGNVFSC 189
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid
factor IGG1-FC, immunoglobulin C region, membrane,
glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG
GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 234
Score = 31.6 bits (72), Expect = 0.11
Identities = 27/148 (18%), Positives = 42/148 (28%), Gaps = 13/148 (8%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQL--STQPVRSF------FV 79
Y ++QR S + R G +L I + D Y C + F V
Sbjct: 69 YRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTV 128
Query: 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVS 139
+ L P + + L C I + W + S
Sbjct: 129 LGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPS 188
Query: 140 VITEKGEVTTSYLLIQQAELKDSGKYSC 167
+ +SYL + + K YSC
Sbjct: 189 KQSNNKYAASSYLSLTPEQWKSHRSYSC 216
>3epo_A Thiamine biosynthesis protein THIC; alpha-beta barrel, SAM
superfamily, biosynthetic protein; HET: MP5; 2.10A
{Caulobacter crescentus} PDB: 3epm_A* 3epn_A*
Length = 612
Score = 32.0 bits (73), Expect = 0.11
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 8 KGLLPTRVSWIRHR-DIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYE 66
KGL TR + + R D+ + D F+ + E+ + + G
Sbjct: 73 KGLPRTREALVVARGDVEEVADPRQVKPEDNGFAQG-KHLAPEFPDTGRKIYRAKPGKLV 131
Query: 67 CQL 69
QL
Sbjct: 132 TQL 134
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 30.8 bits (70), Expect = 0.13
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH-----DEVISYDSSRGGVSVITEKGEVT 148
+ + G ++ + C ++ S + +WY +E D R +V
Sbjct: 8 QRITKETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVNRGSK--- 64
Query: 149 TSYLLIQQAELKDSGKYSC 167
+ L I +KDSG Y C
Sbjct: 65 SFSLRINDLTVKDSGTYRC 83
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 31.4 bits (71), Expect = 0.14
Identities = 19/127 (14%), Positives = 46/127 (36%), Gaps = 16/127 (12%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFF------VNLNVVVPTAEILGSPDLHVDEGSTI 104
TL I+ ++C+++ + + S + V P IL P + +
Sbjct: 77 TLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRK-DV 135
Query: 105 NLTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT---TSYLLIQQAELK 160
+LTC + ++P + W + + + + S L ++ ++ +
Sbjct: 136 SLTCLVVGFNPGD-ISVEWTSNGHT----EENYKDTAPVLDSDGSYFIYSKLNMKTSKWE 190
Query: 161 DSGKYSC 167
+ +SC
Sbjct: 191 KTDSFSC 197
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 31.9 bits (72), Expect = 0.14
Identities = 13/98 (13%), Positives = 25/98 (25%), Gaps = 19/98 (19%)
Query: 94 PDLHVDEGSTINLTCSIK-----YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT 148
V S C +K Y YI W + I + +I
Sbjct: 11 ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYT----IINR----- 61
Query: 149 TSYLLIQQAELKDSGKYSC-----SPSNADVASVYVHV 181
T+ + + + +C +V + +
Sbjct: 62 TASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIIS 99
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 31.5 bits (71), Expect = 0.14
Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 29/144 (20%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF------------VNLNVVV 85
+FS R +G +TL I+ D+ VY C S + NV
Sbjct: 65 QFSV-ERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFP 123
Query: 86 PTAEILGSPDLHVDEGSTINLTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK 144
P + + + L C + P+ + W+ + + +
Sbjct: 124 PEVAVFEPSEAEISHTQKATLVCLATGFYPD-HVELSWWVNGKEVH-------------- 168
Query: 145 GEVTTSYLLIQQAELKDSGKYSCS 168
V T +++ + +Y+ S
Sbjct: 169 SGVCTDPQPLKEQPALNDSRYALS 192
>1dqt_A CTLA4, cytotoxic T lymphocyte associated antigen 4; immunoglobulin
variable domain-like beta-sandwich, homodimer, immune
system; 2.00A {Mus musculus} SCOP: b.1.1.1
Length = 117
Score = 30.4 bits (68), Expect = 0.17
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRRE------GDEWTLHIKWAQKRDAGVYEC 67
RV+ +R + + V + T+T + L I+ + D G+Y C
Sbjct: 33 RVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTGLYLC 92
Query: 68 QLSTQPVRSFFVNL 81
++ +FV +
Sbjct: 93 KVELMYPPPYFVGM 106
Score = 28.1 bits (62), Expect = 1.0
Identities = 14/106 (13%), Positives = 23/106 (21%), Gaps = 12/106 (11%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAY-IFWYHHDE-------VISYDSSR--GGVSVIT 142
+ + C S + ++ G +
Sbjct: 6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPF 65
Query: 143 EKGEVT--TSYLLIQQAELKDSGKYSCSPSNADVASVYVHVLNGEY 186
G L IQ D+G Y C +V + NG
Sbjct: 66 CSGTFNESRVNLTIQGLRAVDTGLYLCKVELMYPPPYFVGMGNGTQ 111
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 31.5 bits (71), Expect = 0.17
Identities = 16/126 (12%), Positives = 42/126 (33%), Gaps = 14/126 (11%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFF------VNLNVVVPTAEILGSPDLHVDEGSTI 104
L + + Y+C++S + + + P L + + +
Sbjct: 90 VLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKN-QV 148
Query: 105 NLTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE--VTTSYLLIQQAELKD 161
+LTC +K + P + W + + + + + + S L + ++ +
Sbjct: 149 SLTCLVKGFYPSD-IAVEWESNGQPENNYKA---TPPVLDSDGSFFLYSKLTVDKSRWQQ 204
Query: 162 SGKYSC 167
+SC
Sbjct: 205 GNVFSC 210
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 29.9 bits (67), Expect = 0.23
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 25 ILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF-VNLNV 83
I + G + R + + E + ++I + D+G Y+C L F V+L V
Sbjct: 50 ISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEV 109
Query: 84 V 84
+
Sbjct: 110 L 110
Score = 27.9 bits (62), Expect = 1.1
Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 14/109 (12%)
Query: 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAY-IFWYHH------DEVISYDSSRGGVS--- 139
I G +++ EG+++++TC + +W +IS +
Sbjct: 4 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGR 63
Query: 140 -VITEKGEVTTSYLLIQQAELKDSGKYSCS---PSNADVASVYVHVLNG 184
+T E T + I Q DSG+Y C S V + VL
Sbjct: 64 ANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVLEH 112
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor,
X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A
1z2k_A
Length = 112
Score = 29.7 bits (66), Expect = 0.26
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 19 RHRDIHILTVGSY-TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSF 77
HR I IL + S+ FS I+ + ++ L IK A+ +D+G Y +++ +
Sbjct: 43 SHRKIEILNWYNDGPSWSNVSFSDIYGFDYGDFALSIKSAKLQDSGHYLLEITNTGGKVC 102
Query: 78 FVNLNVVV 85
N +++
Sbjct: 103 NKNFQLLI 110
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 30.9 bits (68), Expect = 0.27
Identities = 19/107 (17%), Positives = 30/107 (28%), Gaps = 19/107 (17%)
Query: 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145
++ G + LTC I W S + G
Sbjct: 6 KDVYVVELDWYPDAPGEMVVLTCDTP----EEDGITWT-----------LDQSSEVLGSG 50
Query: 146 EVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVLNGEYTGWSES 192
L IQ E D+G+Y+C ++ + + E WS
Sbjct: 51 ----KTLTIQVKEFGDAGQYTCHKGGEVLSHSLLLLHKKEDGIWSTD 93
>3rrq_A Protein PD-1, programmed cell death protein 1; programmed
death-1, costimulatory, immune system; 2.10A {Homo
sapiens}
Length = 129
Score = 30.0 bits (68), Expect = 0.28
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 36 DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
D RF G ++ + + A++ D+G Y C
Sbjct: 61 DCRFRVTQLPNGRDFHMSVVRARRNDSGTYLCG 93
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 29.8 bits (67), Expect = 0.28
Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 21/105 (20%)
Query: 96 LHVDEGSTINLTCSIKYSPEP--PAYIFWYHHD-----EVISYDSSRGGVSVITEKGEVT 148
+ EG T+++ C Y+ E + W + ++ S + G +
Sbjct: 9 YELKEGQTLDVKCD--YTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRII 66
Query: 149 TS--------YLLIQQAELKDSGKYSC----SPSNADVASVYVHV 181
+ + +++DSG Y C P + + +
Sbjct: 67 LEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRL 111
Score = 25.6 bits (56), Expect = 7.3
Identities = 14/96 (14%), Positives = 27/96 (28%), Gaps = 19/96 (19%)
Query: 16 SWIRHRD-----IHILTVGSYTYTSDQ---RFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67
+W RD T + R + + + Q D+G+Y+C
Sbjct: 34 AWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQC 93
Query: 68 QLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGST 103
+ P + + L V +G +
Sbjct: 94 VIYQPPKEPHMLFDRI-----------RLVVTKGFS 118
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 30.7 bits (68), Expect = 0.31
Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 6/91 (6%)
Query: 94 PDLHVDEGSTINLTCSIK---YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTS 150
V G I +C IK +P I W E+ + +S T++ +T
Sbjct: 8 SAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQ-PGGRQQRLSDGTQESIITLP 66
Query: 151 YLLIQQAELKDSGKYSCSPSNADVASVYVHV 181
+L QA L + S + V +
Sbjct: 67 HLNHTQAFLSC--SLNWGNSLQILDQVELRA 95
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 30.4 bits (68), Expect = 0.35
Identities = 5/105 (4%), Positives = 22/105 (20%), Gaps = 2/105 (1%)
Query: 86 PTAEILGSPDLHVDEGSTINLTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK 144
+ + L C + + + W
Sbjct: 13 IQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGT 72
Query: 145 GEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVLNGEYTGW 189
+ S + + + +++C+ + ++ +
Sbjct: 73 YSAS-SAVPVSTQDWLSGERFTCTVQHEELPLPLSKSVYRNTGPT 116
Score = 27.7 bits (61), Expect = 2.3
Identities = 17/170 (10%), Positives = 43/170 (25%), Gaps = 25/170 (14%)
Query: 15 VSWIRHRDIHILTVGSYTYT-SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73
V+W R + ++ + +SA + + + C + +
Sbjct: 48 VTWTREKSGNLRPDPMVLQEHFNGTYSASS-------AVPVSTQDWLSGERFTCTVQHEE 100
Query: 74 VRSFFVNLNVVVPTAEILGS-----PDLHVDEGSTINLTCSIK-YSPEPPAYIFWYHHDE 127
+ P S + L+C ++ + P I W
Sbjct: 101 LPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRD-IEIRWLRDHR 159
Query: 128 VISYDSSRGGVSVITEKGEV----------TTSYLLIQQAELKDSGKYSC 167
+ + E+ S + ++ A+ ++C
Sbjct: 160 AVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFAC 209
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC,
antigen recognition, TCR-PMHC, membrane receptor system;
2.75A {Mus musculus}
Length = 256
Score = 30.5 bits (69), Expect = 0.36
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 13/81 (16%)
Query: 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHD-----EVISYDSSRGGVSVITE--KGEVTTS 150
V EG+++ L C YS P Y+FWY +++ S V + E + S
Sbjct: 15 VSEGASLQLRCKYSYSATP--YLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKS 72
Query: 151 ----YLLIQQAELKDSGKYSC 167
+L DS Y C
Sbjct: 73 DSSFHLRKASVHRSDSAVYFC 93
Score = 28.1 bits (63), Expect = 1.7
Identities = 30/200 (15%), Positives = 51/200 (25%), Gaps = 54/200 (27%)
Query: 15 VSWIRHRD------IHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
+ W + G F A + + L + D+ VY C
Sbjct: 35 LFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDSAVYFCA 94
Query: 69 LSTQPVRSFFV-----------------NLNVVVPTAEILGS--------PDLHVDEGST 103
+S + S + GS + G
Sbjct: 95 VSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGEN 154
Query: 104 INLTCSIKYSPEPPAYIFWYHHD-----EVISYDSSRGGVSVITEKGEV----------- 147
+ L+C S Y++WY D +I Y G + G+V
Sbjct: 155 VTLSCRQTNSHN---YMYWYRQDTGHELRLIYYSYGAGN----LQIGDVPDGYKATRTTQ 207
Query: 148 TTSYLLIQQAELKDSGKYSC 167
+L ++ A + Y C
Sbjct: 208 EDFFLTLESASPSQTSLYFC 227
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 30.2 bits (68), Expect = 0.41
Identities = 22/175 (12%), Positives = 45/175 (25%), Gaps = 36/175 (20%)
Query: 15 VSWIRHRD-------IHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67
+ W R + + +G + Q S R + ++ L K D+G Y C
Sbjct: 33 LYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLS-ASRPQDRQFILSSKKLLLSDSGFYLC 91
Query: 68 QLSTQPVRSFFV--------------NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYS 113
S V P + + + L C
Sbjct: 92 AWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGF 151
Query: 114 PEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168
+ W+ + + + V T +++ + +Y+ S
Sbjct: 152 FPDHVELSWWVNGKEVH--------------SGVCTDPQPLKEQPALNDSRYALS 192
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex
(immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 212
Score = 29.9 bits (68), Expect = 0.49
Identities = 29/140 (20%), Positives = 41/140 (29%), Gaps = 15/140 (10%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFV----NLNV-----VVPTA 88
RFS G TL I AQ D Y C S L V P
Sbjct: 59 RFSG--STSGTTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKV 116
Query: 89 EILGSPDLHVDEGSTINLTCSI-KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147
+ + L C + + P A + W + I+ S +
Sbjct: 117 TVFPPSPEELRTN-KATLVCLVNDFYPG-SATVTWKANGATINDGVKTTKPSKQGQNYMT 174
Query: 148 TTSYLLIQQAELKDSGKYSC 167
+SYL + + K + SC
Sbjct: 175 -SSYLSLTADQWKSHNRVSC 193
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 30.0 bits (68), Expect = 0.49
Identities = 31/180 (17%), Positives = 55/180 (30%), Gaps = 38/180 (21%)
Query: 15 VSWIRHRD-------IHILTVGSYTYTSD--QRFSAIHRREGDEWTLHIKWAQKRDAGVY 65
+ W + + + + GS++ RFS G + L I Q D +Y
Sbjct: 33 IEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSG--SSSGADRYLSISNIQPEDEAIY 90
Query: 66 ECQLSTQPVRSFFV-----------NLNVVVPTAEIL--GSPDLHVDEGSTINLTCSIK- 111
C + F PT + S +L + + L C I
Sbjct: 91 ICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEEL---KENKATLVCLISN 147
Query: 112 YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTT----SYLLIQQAELKDSGKYSC 167
+SP + W + I+ GV E S+L + + + ++C
Sbjct: 148 FSPS-GVTVAWKANGTPIT-----QGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTC 201
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1
neutralizing antibody, GP120, immune system; HET: PCA
MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L*
2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A*
1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A
1mcl_A* 1mcn_A* 1mcq_A 1mcr_A ...
Length = 211
Score = 29.7 bits (67), Expect = 0.54
Identities = 27/144 (18%), Positives = 41/144 (28%), Gaps = 23/144 (15%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFV--------NLNVVVPTAE 89
RFS + G+ +L + Q D VY C F P+
Sbjct: 58 RFSG--SKSGNTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVT 115
Query: 90 ILGSPDLHVDEGSTINLTCSI-KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-- 146
+ + L C I + P + W + GV T +
Sbjct: 116 LFPPSSEELQAN-KATLVCLISDFYPG-AVTVAWKADSSPVK-----AGVETTTPSKQSN 168
Query: 147 ---VTTSYLLIQQAELKDSGKYSC 167
+SYL + + K YSC
Sbjct: 169 NKYAASSYLSLTPEQWKSHRSYSC 192
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 28.5 bits (64), Expect = 0.55
Identities = 14/76 (18%), Positives = 22/76 (28%), Gaps = 12/76 (15%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152
P V G T+ L C + A + + +D + E
Sbjct: 11 HPSQGVSLGDTVTLRCHL----PRMAAWVQLWLNGTLRFDKEKDKEQDAAE--------F 58
Query: 153 LIQQAELKDSGKYSCS 168
L+D+G Y C
Sbjct: 59 SFAVTNLEDAGTYQCR 74
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.64
Identities = 11/77 (14%), Positives = 20/77 (25%), Gaps = 21/77 (27%)
Query: 55 KWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLH---VDEGSTINLTCSIK 111
K ++ + L + ++ LH VD + S
Sbjct: 419 KQPKESTISIPSIYLELK---------------VKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 112 YSPEPP-AYIFWY--HH 125
P Y + + HH
Sbjct: 464 LIPPYLDQYFYSHIGHH 480
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B,
IG-beta, BCR, immunoglobulin domain, protein binding;
3.20A {Homo sapiens}
Length = 134
Score = 28.9 bits (65), Expect = 0.65
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 35 SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
R + TL I+ + D G+Y CQ
Sbjct: 67 EKGRMEE--SQNESLATLTIQGIRFEDNGIYFCQ 98
>3i84_A Cervical EMMPRIN; CD147, dimerization, cell adhesion, beta-strand
swapping; 2.00A {Homo sapiens} PDB: 3i85_A
Length = 98
Score = 28.2 bits (62), Expect = 0.65
Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 13/69 (18%)
Query: 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAE 158
D GS I LTCS+ S W V+ D+ G + +
Sbjct: 20 DLGSKILLTCSLDDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSD------------ 67
Query: 159 LKDSGKYSC 167
G+YSC
Sbjct: 68 -DQWGEYSC 75
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 28.6 bits (63), Expect = 0.73
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQA 157
+ G L C +KY P ++ W + + E+ ++ L +
Sbjct: 23 ILAGDPFELECPVKYCANRP-HVTWCKLNGTTCV-KLEDRQTSWKEEKNISFFILHFEPV 80
Query: 158 ELKDSGKYSCSPSN 171
D+G Y CS +
Sbjct: 81 LPNDNGSYRCSANF 94
>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold,
toxin-immune system complex; 2.95A {Rattus norvegicus}
Length = 125
Score = 28.3 bits (64), Expect = 0.83
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSF 77
+ A R + ++L ++ A VY C F
Sbjct: 68 GYKA-SRPSQENFSLILELATPSQTSVYFCASGGGGTLYF 106
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune
system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L
2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L*
1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L*
1mfb_L* ...
Length = 212
Score = 29.2 bits (66), Expect = 0.85
Identities = 27/137 (19%), Positives = 42/137 (30%), Gaps = 10/137 (7%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF-------VNLNVVVPTAEI 90
RFS GD+ L I AQ D +Y C L + F + PT +
Sbjct: 63 RFSG--SLIGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTL 120
Query: 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTS 150
+ L C+I + W ++ S + + +S
Sbjct: 121 FPPSSEELSTA-KATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASS 179
Query: 151 YLLIQQAELKDSGKYSC 167
YL + + YSC
Sbjct: 180 YLTLTARAWERHSSYSC 196
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A
{Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A
1c5d_L 1bfo_A 3b9k_L*
Length = 210
Score = 29.1 bits (66), Expect = 0.85
Identities = 25/138 (18%), Positives = 45/138 (32%), Gaps = 12/138 (8%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSF------FVNLNVVVPTAEIL 91
RFS G ++TL I + D +Y CQ S +F + PT I
Sbjct: 60 RFSG--SGSGTDFTLTIDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIF 117
Query: 92 GSPDLHVDEGSTINLTCSI-KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTT 149
+ G ++ C + + P + W ++ +
Sbjct: 118 PPSTEQLATG-GASVVCLMNNFYPR-DISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMS 175
Query: 150 SYLLIQQAELKDSGKYSC 167
S L + +A+ + Y+C
Sbjct: 176 STLSLTKADYESHNLYTC 193
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 29.5 bits (66), Expect = 0.87
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 3/83 (3%)
Query: 93 SPDLHVDEGSTINLTCSIK-YSPEPPAYIF-WYHHDEVISYDSSRGGVSVITEKGEVTTS 150
P + T +TC + S + P F W+ D V + + S
Sbjct: 237 KPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFV-DNVEVHTAQTQPREEQFNSTFRVVS 295
Query: 151 YLLIQQAELKDSGKYSCSPSNAD 173
L I + + ++ C ++A
Sbjct: 296 ALPIMHQDWLNGKEFKCRVNSAA 318
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 28.2 bits (63), Expect = 0.99
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 8/79 (10%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYH-----HDEVISYDSSRGGVSVITEKGEVT 148
+ G ++ + C ++ + WY +E R +V
Sbjct: 8 RTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSK--- 64
Query: 149 TSYLLIQQAELKDSGKYSC 167
+ L I ++DSG Y C
Sbjct: 65 SFSLRISDLRVEDSGTYKC 83
Score = 25.5 bits (56), Expect = 8.3
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPT 87
+L I + D+G Y+CQ + +
Sbjct: 67 SLRISDLRVEDSGTYKCQAFYVFFAEDVGSNKGAIIG 103
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 28.3 bits (63), Expect = 1.0
Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 13/85 (15%)
Query: 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHD-----EVISYDSSRGGVSVITEKGEVT-- 148
+ EG T+++ C + W + ++ S + G +
Sbjct: 14 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILE 73
Query: 149 ------TSYLLIQQAELKDSGKYSC 167
+ + +++DSG Y C
Sbjct: 74 DYHDHGLLRVRMVNLQVEDSGLYQC 98
Score = 26.3 bits (58), Expect = 4.6
Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 5/81 (6%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQ---RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70
+ T + R + + + Q D+G+Y+C +
Sbjct: 42 IIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIY 101
Query: 71 TQPVRS--FFVNLNVVVPTAE 89
P F + +VV
Sbjct: 102 QPPKEPHMLFDRIRLVVTLEH 122
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 28.1 bits (63), Expect = 1.1
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 5/48 (10%)
Query: 33 YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ--LSTQPVRSFF 78
R + G +TL I+ Q D G+Y C+ +
Sbjct: 63 SEEG-RIVQ--TQNGSVYTLTIQNIQYEDNGIYFCKQKCDSANHNVTD 107
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 29.0 bits (65), Expect = 1.2
Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 101 GSTINLTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTT-SYLLIQQAE 158
+ ++LTC +K + P A + W + + + + + V+ G S L + ++
Sbjct: 257 KNQVSLTCLVKGFYPSDIA-VEWESNGQPEN--NYKTTPPVLDSDGSFFLYSKLTVDKSR 313
Query: 159 LKDSGKYSCS 168
+ +SCS
Sbjct: 314 WQQGNVFSCS 323
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens}
PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A
3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L
3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Length = 216
Score = 28.4 bits (64), Expect = 1.5
Identities = 35/169 (20%), Positives = 60/169 (35%), Gaps = 24/169 (14%)
Query: 33 YTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF-------VN 80
Y +++R S I R G TL I Q D Y C + F +
Sbjct: 50 YDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIK 109
Query: 81 LNVVVPTAEILGSPDLHVDEGSTINLTCSI-KYSPEPPAYIFWYHHDEVISYDSSRGGVS 139
V P+ I D + G T ++ C + + P A + W V + S
Sbjct: 110 RTVAAPSVFIFPPSDEQLKSG-TASVVCLLNNFYPR-EAKVQWK----VDNALQSGNSQE 163
Query: 140 VITEKGEV-----TTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
+TE+ +S L + +A+ + Y+C ++ ++S N
Sbjct: 164 SVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 212
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon,
T-cell receptor, signalling, IMMU; 2.50A {Cricetulus
migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Length = 213
Score = 28.3 bits (64), Expect = 1.6
Identities = 27/142 (19%), Positives = 49/142 (34%), Gaps = 20/142 (14%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSF------FVNLNVVVPTAEIL 91
RFS G + + I + D G Y CQ +F + PT I
Sbjct: 61 RFSG--SGSGRDSSFTISSLESEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIF 118
Query: 92 GSPDLHVDEGSTINLTCSI-KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE---- 146
+ G + L C + + P+ + W V + G + +T++
Sbjct: 119 PPSSEQLGTG-SATLVCFVNNFYPK-DINVKWK----VDGSEKRDGVLQSVTDQDSKDST 172
Query: 147 -VTTSYLLIQQAELKDSGKYSC 167
+S L + +A+ + Y+C
Sbjct: 173 YSLSSTLSLTKADYERHNLYTC 194
>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A
{Mus musculus} PDB: 2e7l_C
Length = 121
Score = 27.6 bits (62), Expect = 1.8
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSF 77
+ A R + ++L ++ A VY C F
Sbjct: 63 GYKA-SRPSQENFSLTLESATPSQTSVYFCASGGGGTLYF 101
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 28.0 bits (63), Expect = 2.3
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 123 YHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
H V +D S V + T G T L++
Sbjct: 168 LTHTRVEDFDISPDSVKIETANGSYTADKLIV 199
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 26.8 bits (59), Expect = 2.3
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 17 WIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC--QLSTQPV 74
++ +++ R + + G + + Q+ DAG Y C + P
Sbjct: 35 FLPEGCQPLVSSAVDRRAPAGRRTFLTDLGGGLLQVEMVTLQEEDAGEYGCMVDGARGPQ 94
Query: 75 RSFFVNLNVVVP 86
V+LN++ P
Sbjct: 95 ILHRVSLNILPP 106
Score = 26.0 bits (57), Expect = 4.6
Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 17/105 (16%)
Query: 92 GSPDLHVDEGSTINLTCSIKYSPEPPAY-IFWYHH-----DEVISYDSSR----GGVSVI 141
L GS+I + C Y + W ++S R G + +
Sbjct: 3 LPEVLQAPVGSSILVQCH--YRLQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFL 60
Query: 142 TEKGEVTTSYLLIQQAELKDSGKYSC---SPSNADV-ASVYVHVL 182
T+ G + + + +D+G+Y C + V +++L
Sbjct: 61 TDLGGGLLQ-VEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNIL 104
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 28.2 bits (63), Expect = 2.4
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 123 YHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+ V GVSV T++G +++
Sbjct: 171 RAGETVTELVPDADGVSVTTDRGTYRAGKVVL 202
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 213
Score = 27.5 bits (62), Expect = 2.5
Identities = 33/147 (22%), Positives = 48/147 (32%), Gaps = 29/147 (19%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS-TQPVRSFF-------VNLNVVVPTAE 89
RF G ++TL I + DA Y CQ + P F V + V PT
Sbjct: 61 RFKG--SGSGTDFTLTISDLECADAATYYCQSTYENPTYVSFGGGTEVGVKGDPVAPTVL 118
Query: 90 ILGSPDLHVDEGSTINLTCSI-KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV- 147
I V G T+ + C KY P+ + W D + + K
Sbjct: 119 IFPPSADLVATG-TVTIVCVANKYFPD--VTVTWE-------VDGTTQTTGIENSKTPQN 168
Query: 148 -------TTSYLLIQQAELKDSGKYSC 167
+S L + E +Y+C
Sbjct: 169 SADCTYNLSSTLTLTSTEYNSHKEYTC 195
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen,
allergen, antimic bacteriolytic enzyme, glycosidase,
hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A
1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A
1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A
1rih_L 1p2c_A ...
Length = 213
Score = 27.6 bits (62), Expect = 2.9
Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 20/142 (14%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF------VNLNVVVPTAEIL 91
RFS G ++TL I + D G+Y CQ S +F + PT I
Sbjct: 61 RFSG--SGSGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIF 118
Query: 92 GSPDLHVDEGSTINLTCSI-KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTT- 149
+ G ++ C + + P+ + W + + G ++ T++ +
Sbjct: 119 PPSSEQLTSG-GASVVCFLNNFYPK-DINVKWK----IDGSERQNGVLNSWTDQDSKDST 172
Query: 150 ----SYLLIQQAELKDSGKYSC 167
S L + + E + Y+C
Sbjct: 173 YSMSSTLTLTKDEYERHNSYTC 194
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus
musculus}
Length = 233
Score = 27.2 bits (61), Expect = 3.8
Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 26/145 (17%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF------VNLNVVVPTAEIL 91
RFS+ G ++ I+ D Y C S +F + PT I
Sbjct: 83 RFSS--SGYGTDFVFTIENMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIF 140
Query: 92 GSPDLHVDEGSTINLTCSI-KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTT- 149
+ G ++ C + + P+ + W D S V+ + +
Sbjct: 141 PPSSEQLTSG-GASVVCFLNNFYPK-DINVKWK-------IDGSERQNGVLNSWTDQDSK 191
Query: 150 -------SYLLIQQAELKDSGKYSC 167
S L + + E + Y+C
Sbjct: 192 DSTYSMSSTLTLTKDEYERHNSYTC 216
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A
{Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 26.1 bits (58), Expect = 3.9
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 8/84 (9%)
Query: 100 EGSTINLTCSIKYSPEPPAYIFWYHH-----DEVISYDSSRGGVSVITEKGEVTTSYLLI 154
G ++ + C +K + WY +E R +V + L I
Sbjct: 14 TGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDKGS---KSFSLRI 70
Query: 155 QQAELKDSGKYSCSPSNADVASVY 178
++DSG Y C + Y
Sbjct: 71 SDLRVEDSGTYKCQADYSPSCYSY 94
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 27.3 bits (59), Expect = 4.1
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 8/71 (11%)
Query: 76 SFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSR 135
S F+N ++G L D + ++Y PE I + D
Sbjct: 83 STFLNA--------LIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQN 134
Query: 136 GGVSVITEKGE 146
+ E
Sbjct: 135 FKYKYTIDPAE 145
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 27.3 bits (61), Expect = 4.5
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 123 YHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+ V + GV++ T GE ++
Sbjct: 167 LFNCPVTAIRHDDDGVTIETADGEYQAKKAIV 198
>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1,
CD172B antigen, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 136
Score = 26.4 bits (59), Expect = 4.7
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
S + +R ++++ I DAG Y C
Sbjct: 67 TVSELTKRNNLDFSISISNITPADAGTYYCV 97
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 27.2 bits (60), Expect = 5.0
Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 11/115 (9%)
Query: 64 VYECQ-----LSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIK-YSPEPP 117
+ C T + + N P +L P + + LTC + +SP+
Sbjct: 323 TFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPK-D 381
Query: 118 AYIFWYHHDEVISYDSSRGGVSVITEKGEVTT----SYLLIQQAELKDSGKYSCS 168
+ W + + + S TT S L + + K +SC
Sbjct: 382 VLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCM 436
>2ijr_A Hypothetical protein API92; structural genomics, PSI, protein
structure initiative; 2.70A {Yersinia
pseudotuberculosis} SCOP: e.66.1.1
Length = 300
Score = 27.0 bits (59), Expect = 5.1
Identities = 26/181 (14%), Positives = 55/181 (30%), Gaps = 24/181 (13%)
Query: 32 TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPT---A 88
+ Q + + R+ +W W+ + +L + ++ +++PT
Sbjct: 120 PEGARQIITQLMARQYPDWFGVASWSSHINGADCWTKLGVMQEHACNCDMLMIIPTRLAI 179
Query: 89 EILGSPDLHVDEGSTINLTCS-----------IKYSPEPPAYIF------WYH-HDEVIS 130
E+ G+ L +T +L I + + + Y E++
Sbjct: 180 ELNGNSQLLTGVSTTHDLYSHLYGMAWPSGQNIIWQRDRINSLRLDFDSPSYPPSAELMG 239
Query: 131 YDSSRGGVSV---ITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVLNGEYT 187
S+ + E Y + + DSG+Y P + V V E
Sbjct: 240 ELSAVFDCEIRHWYQEPVNGIRGYDCYDRGDHVDSGEYGAGPFLPPLKVEEVTVNGQEEA 299
Query: 188 G 188
Sbjct: 300 A 300
>1avb_A Arcelin-1; lectin-like glycoprotein, plant defense, insecticidal
activi lectin; HET: NAG; 1.90A {Phaseolus vulgaris}
SCOP: b.29.1.1
Length = 226
Score = 26.6 bits (58), Expect = 5.5
Identities = 9/75 (12%), Positives = 20/75 (26%), Gaps = 2/75 (2%)
Query: 87 TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE 146
A + + + +N I + + I+YDS + + V
Sbjct: 118 VAVVFDTVSNRI--EIDVNSIRPIATESCNFGHNNGEKAEVRITYDSPKNDLRVSLLYPS 175
Query: 147 VTTSYLLIQQAELKD 161
+ L+
Sbjct: 176 SEEKCHVSATVPLEK 190
>2yib_D RNA-directed RNA polymerase; transferase, reverse transcriptase,
IPNV; 3.80A {Infectious pancreatic necrosis virus}
Length = 770
Score = 26.6 bits (57), Expect = 7.5
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 120 IFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYV 179
I+ + S D +G + + + YLL + + G +P+ A A
Sbjct: 390 IYILQDNTWYSIDLEKGEANCTPQHMQAMMYYLLT-RGWTNEDGSPRYNPTWATFAMNVA 448
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 26.7 bits (58), Expect = 7.6
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 85 VPTAEILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSV 140
+P ++ P D + GS I C + + + + +I D + +
Sbjct: 196 IPDSQTKVFPQDKVILVGSDITFCCVSQEKVLS--ALIGHTNCPLIHLDGENVAIKI 250
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 26.3 bits (57), Expect = 9.0
Identities = 15/95 (15%), Positives = 21/95 (22%), Gaps = 12/95 (12%)
Query: 94 PDLHVDEGSTINLTCSIK-----YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT 148
V S C +K Y YI W + I T
Sbjct: 12 ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIP-------KEQYTIINRTA 64
Query: 149 TSYLLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
+S A L + +VY +
Sbjct: 65 SSVTFTDIASLNIQLTCNILTFGQLEQNVYGITII 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.408
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,257,951
Number of extensions: 182784
Number of successful extensions: 1671
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1031
Number of HSP's successfully gapped: 653
Length of query: 212
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 123
Effective length of database: 4,216,824
Effective search space: 518669352
Effective search space used: 518669352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)