Query psy13372
Match_columns 273
No_of_seqs 117 out of 1102
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 17:48:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13372.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13372hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3622 Hfi Hydroxypyruvate is 100.0 1.4E-48 2.9E-53 312.9 24.0 253 5-269 1-257 (260)
2 PRK09989 hypothetical protein; 100.0 1.7E-44 3.7E-49 307.7 28.4 252 6-269 2-257 (258)
3 PRK09997 hydroxypyruvate isome 100.0 1.9E-44 4.2E-49 307.3 28.6 253 5-269 1-257 (258)
4 TIGR03234 OH-pyruv-isom hydrox 100.0 1.1E-43 2.4E-48 302.1 26.4 249 7-267 2-254 (254)
5 PRK09856 fructoselysine 3-epim 100.0 6.5E-40 1.4E-44 282.1 27.2 250 6-269 1-270 (275)
6 TIGR00542 hxl6Piso_put hexulos 100.0 2.6E-37 5.6E-42 266.4 26.5 246 7-268 4-270 (279)
7 PRK13210 putative L-xylulose 5 100.0 4.1E-37 8.8E-42 265.8 26.5 246 6-268 3-276 (284)
8 KOG4518|consensus 100.0 5.6E-37 1.2E-41 238.4 19.5 255 6-271 3-262 (264)
9 PRK13209 L-xylulose 5-phosphat 100.0 3.4E-36 7.3E-41 260.0 26.6 247 6-269 8-276 (283)
10 TIGR02631 xylA_Arthro xylose i 100.0 7.4E-36 1.6E-40 265.1 29.1 249 4-259 5-294 (382)
11 PRK01060 endonuclease IV; Prov 100.0 3E-35 6.5E-40 253.8 24.3 249 5-272 1-280 (281)
12 cd00019 AP2Ec AP endonuclease 100.0 3.3E-34 7.1E-39 247.1 24.3 242 9-268 2-278 (279)
13 PRK12677 xylose isomerase; Pro 100.0 6.2E-33 1.3E-37 246.7 27.6 248 4-256 4-289 (384)
14 COG1082 IolE Sugar phosphate i 100.0 1.1E-32 2.3E-37 236.9 26.7 250 6-269 3-271 (274)
15 smart00518 AP2Ec AP endonuclea 100.0 6.9E-31 1.5E-35 225.7 24.5 232 22-269 11-273 (273)
16 TIGR00587 nfo apurinic endonuc 100.0 6.9E-28 1.5E-32 206.8 22.3 229 6-253 1-261 (274)
17 COG3623 SgaU Putative L-xylulo 100.0 9.6E-28 2.1E-32 191.5 19.2 233 7-255 6-260 (287)
18 PF01261 AP_endonuc_2: Xylose 100.0 8.6E-28 1.9E-32 198.3 13.9 193 27-230 1-213 (213)
19 PTZ00372 endonuclease 4-like p 99.9 7.9E-25 1.7E-29 193.7 23.1 245 6-269 131-411 (413)
20 PRK03906 mannonate dehydratase 99.9 4.1E-23 8.9E-28 182.4 14.8 173 78-254 150-344 (385)
21 COG4130 Predicted sugar epimer 99.9 4.1E-21 9E-26 151.8 19.8 239 4-268 3-269 (272)
22 COG0648 Nfo Endonuclease IV [D 99.9 7.1E-20 1.5E-24 154.0 21.4 244 5-269 1-274 (280)
23 TIGR02635 RhaI_grampos L-rhamn 99.8 1.4E-18 3E-23 153.2 25.5 224 21-254 37-288 (378)
24 TIGR02630 xylose_isom_A xylose 99.8 6.2E-17 1.3E-21 141.2 22.4 228 25-257 82-342 (434)
25 PRK05474 xylose isomerase; Pro 99.8 6.6E-17 1.4E-21 141.6 22.6 227 26-257 84-343 (437)
26 TIGR00695 uxuA mannonate dehyd 99.7 4E-16 8.7E-21 137.2 13.6 162 81-246 153-341 (394)
27 PRK02308 uvsE putative UV dama 99.6 2.2E-14 4.7E-19 124.1 19.4 211 22-257 49-290 (303)
28 PRK12465 xylose isomerase; Pro 99.6 1.4E-13 3.1E-18 119.8 22.2 225 23-256 91-352 (445)
29 PF03786 UxuA: D-mannonate deh 99.6 1E-14 2.2E-19 126.2 15.0 224 24-254 14-318 (351)
30 TIGR02629 L_rham_iso_rhiz L-rh 99.6 2.2E-13 4.7E-18 119.7 23.4 234 20-263 66-331 (412)
31 COG1312 UxuA D-mannonate dehyd 99.5 3.1E-12 6.7E-17 108.4 17.2 218 24-248 13-316 (362)
32 KOG3997|consensus 99.4 8.4E-12 1.8E-16 99.5 14.0 233 22-270 14-279 (281)
33 PLN02923 xylose isomerase 99.4 3.2E-10 6.9E-15 99.1 21.3 228 27-257 129-387 (478)
34 TIGR00629 uvde UV damage endon 99.0 7.2E-08 1.6E-12 83.2 19.9 210 21-256 52-300 (312)
35 PF03851 UvdE: UV-endonuclease 98.5 4.3E-06 9.2E-11 71.1 14.0 174 21-218 45-251 (275)
36 TIGR01748 rhaA L-rhamnose isom 98.4 3E-05 6.4E-10 68.0 16.6 210 21-246 66-315 (414)
37 PRK01076 L-rhamnose isomerase; 98.3 0.00025 5.3E-09 62.6 21.3 212 20-246 69-319 (419)
38 PF07582 AP_endonuc_2_N: AP en 98.3 3.7E-07 8.1E-12 57.7 2.5 41 231-272 1-46 (55)
39 PRK05409 hypothetical protein; 98.2 0.00011 2.5E-09 62.7 15.6 200 35-254 28-250 (281)
40 PF05114 DUF692: Protein of un 98.1 1.4E-05 3E-10 68.2 8.0 211 24-254 15-248 (274)
41 COG2115 XylA Xylose isomerase 98.0 0.00074 1.6E-08 57.8 17.0 190 24-217 85-300 (438)
42 COG4294 Uve UV damage repair e 97.9 0.001 2.3E-08 56.2 15.3 217 22-263 74-324 (347)
43 COG4952 Predicted sugar isomer 97.7 0.0013 2.9E-08 55.4 13.7 205 35-247 94-317 (430)
44 PF00682 HMGL-like: HMGL-like 97.7 0.0028 6.1E-08 53.2 15.8 196 22-243 15-237 (237)
45 COG3220 Uncharacterized protei 97.7 0.0038 8.1E-08 51.9 15.7 201 33-253 25-249 (282)
46 PRK11858 aksA trans-homoaconit 97.7 0.0058 1.3E-07 55.0 18.2 194 24-246 29-248 (378)
47 cd03174 DRE_TIM_metallolyase D 97.5 0.029 6.4E-07 47.7 19.4 192 23-245 21-248 (265)
48 cd07937 DRE_TIM_PC_TC_5S Pyruv 97.5 0.039 8.4E-07 47.5 19.5 194 22-245 22-250 (275)
49 cd07939 DRE_TIM_NifV Streptomy 97.5 0.015 3.2E-07 49.6 16.7 192 23-245 22-241 (259)
50 PRK12331 oxaloacetate decarbox 97.4 0.032 7E-07 51.2 19.4 193 23-246 28-256 (448)
51 PRK05265 pyridoxine 5'-phospha 97.4 0.0056 1.2E-07 50.7 12.5 51 92-148 138-188 (239)
52 PLN02746 hydroxymethylglutaryl 97.3 0.069 1.5E-06 47.4 18.8 198 22-246 66-306 (347)
53 cd07948 DRE_TIM_HCS Saccharomy 97.2 0.037 8E-07 47.3 16.5 193 23-244 24-241 (262)
54 cd07945 DRE_TIM_CMS Leptospira 97.2 0.045 9.8E-07 47.2 17.0 193 22-245 17-250 (280)
55 cd07941 DRE_TIM_LeuA3 Desulfob 97.2 0.063 1.4E-06 46.1 17.4 203 22-244 21-253 (273)
56 PRK05692 hydroxymethylglutaryl 97.1 0.068 1.5E-06 46.3 17.2 194 24-245 29-263 (287)
57 TIGR00977 LeuA_rel 2-isopropyl 97.1 0.032 6.9E-07 52.4 15.9 201 25-245 27-257 (526)
58 TIGR02660 nifV_homocitr homoci 97.1 0.059 1.3E-06 48.3 17.1 191 24-245 26-244 (365)
59 TIGR02090 LEU1_arch isopropylm 97.1 0.07 1.5E-06 47.8 17.4 194 24-246 25-244 (363)
60 cd07943 DRE_TIM_HOA 4-hydroxy- 97.1 0.067 1.4E-06 45.7 16.6 183 22-246 23-244 (263)
61 cd07940 DRE_TIM_IPMS 2-isoprop 97.0 0.079 1.7E-06 45.4 16.8 192 22-243 21-245 (268)
62 TIGR03217 4OH_2_O_val_ald 4-hy 97.0 0.11 2.4E-06 45.9 17.9 183 22-246 25-247 (333)
63 PRK09282 pyruvate carboxylase 97.0 0.16 3.4E-06 48.5 19.7 193 22-245 27-255 (592)
64 COG0821 gcpE 1-hydroxy-2-methy 97.0 0.067 1.5E-06 46.4 15.2 216 8-271 22-254 (361)
65 cd07938 DRE_TIM_HMGL 3-hydroxy 96.9 0.13 2.7E-06 44.3 17.3 192 24-245 23-257 (274)
66 PRK00915 2-isopropylmalate syn 96.9 0.12 2.6E-06 48.5 18.3 192 25-242 30-251 (513)
67 PRK08195 4-hyroxy-2-oxovalerat 96.9 0.14 3.1E-06 45.3 17.6 183 22-246 26-248 (337)
68 cd07944 DRE_TIM_HOA_like 4-hyd 96.9 0.2 4.3E-06 42.9 18.0 179 22-242 21-238 (266)
69 TIGR00970 leuA_yeast 2-isoprop 96.8 0.13 2.8E-06 48.8 17.5 199 22-245 46-295 (564)
70 PRK14041 oxaloacetate decarbox 96.8 0.25 5.4E-06 45.7 18.7 193 22-245 26-254 (467)
71 PRK12344 putative alpha-isopro 96.7 0.12 2.6E-06 48.6 16.5 201 24-244 30-259 (524)
72 PRK09389 (R)-citramalate synth 96.7 0.19 4E-06 46.9 17.4 193 24-245 27-245 (488)
73 PF06134 RhaA: L-rhamnose isom 96.6 0.02 4.4E-07 50.4 9.5 192 49-253 114-327 (417)
74 PRK12330 oxaloacetate decarbox 96.5 0.63 1.4E-05 43.4 19.6 194 22-246 28-259 (499)
75 cd07942 DRE_TIM_LeuA Mycobacte 96.5 0.44 9.5E-06 41.2 17.6 193 25-245 27-267 (284)
76 PRK12581 oxaloacetate decarbox 96.5 0.55 1.2E-05 43.4 18.8 190 22-246 36-265 (468)
77 TIGR01108 oadA oxaloacetate de 96.5 0.49 1.1E-05 45.1 19.1 193 22-246 22-251 (582)
78 TIGR00559 pdxJ pyridoxine 5'-p 96.4 0.23 4.9E-06 41.3 14.0 51 93-148 136-186 (237)
79 PLN02321 2-isopropylmalate syn 96.3 0.56 1.2E-05 45.0 18.4 199 22-243 106-343 (632)
80 PRK14042 pyruvate carboxylase 96.3 0.77 1.7E-05 43.8 19.1 194 22-246 27-256 (596)
81 cd07947 DRE_TIM_Re_CS Clostrid 96.3 0.33 7.1E-06 41.9 15.4 205 24-245 24-262 (279)
82 TIGR00973 leuA_bact 2-isopropy 96.2 0.52 1.1E-05 44.1 17.5 193 24-242 26-248 (494)
83 PRK14040 oxaloacetate decarbox 96.1 1.3 2.8E-05 42.4 19.6 190 22-245 28-256 (593)
84 PRK14847 hypothetical protein; 96.1 0.61 1.3E-05 41.1 16.1 197 22-245 52-298 (333)
85 PRK12999 pyruvate carboxylase; 96.1 0.99 2.1E-05 46.6 19.7 194 22-246 556-793 (1146)
86 PRK02048 4-hydroxy-3-methylbut 96.0 0.5 1.1E-05 44.5 15.8 204 24-252 44-269 (611)
87 COG5016 Pyruvate/oxaloacetate 95.9 0.28 6E-06 43.9 13.2 27 224-251 237-263 (472)
88 TIGR03849 arch_ComA phosphosul 95.9 0.18 3.9E-06 42.1 11.6 135 22-189 72-216 (237)
89 PLN03228 methylthioalkylmalate 95.9 0.79 1.7E-05 42.8 16.6 195 25-243 110-342 (503)
90 PF02126 PTE: Phosphotriestera 95.8 0.53 1.1E-05 41.2 14.4 205 26-252 43-256 (308)
91 PRK03739 2-isopropylmalate syn 95.6 2 4.3E-05 40.8 18.5 198 22-245 50-296 (552)
92 TIGR00612 ispG_gcpE 1-hydroxy- 95.6 1.4 3.1E-05 38.5 15.8 104 8-150 20-127 (346)
93 PF02679 ComA: (2R)-phospho-3- 95.3 0.13 2.8E-06 43.2 8.6 139 21-192 84-231 (244)
94 cd00003 PNPsynthase Pyridoxine 95.3 0.19 4.1E-06 41.7 9.3 74 50-148 113-186 (234)
95 PLN02925 4-hydroxy-3-methylbut 95.3 0.96 2.1E-05 43.4 14.9 206 24-252 113-338 (733)
96 PRK00366 ispG 4-hydroxy-3-meth 95.2 2 4.4E-05 37.9 15.7 91 24-150 45-136 (360)
97 PF10566 Glyco_hydro_97: Glyco 95.1 0.38 8.2E-06 41.2 10.8 110 22-151 33-157 (273)
98 PF03932 CutC: CutC family; I 95.0 1.7 3.6E-05 35.6 14.6 124 22-172 9-136 (201)
99 COG0119 LeuA Isopropylmalate/h 94.7 3.4 7.3E-05 37.7 17.2 193 24-242 27-246 (409)
100 PRK00694 4-hydroxy-3-methylbut 94.6 0.24 5.2E-06 46.3 8.8 200 24-248 48-269 (606)
101 COG0854 PdxJ Pyridoxal phospha 94.5 0.56 1.2E-05 38.4 9.8 77 50-148 114-190 (243)
102 COG1830 FbaB DhnA-type fructos 94.3 1.1 2.5E-05 37.9 11.6 135 6-172 82-223 (265)
103 PF04551 GcpE: GcpE protein; 94.1 0.32 6.9E-06 42.8 8.3 227 8-270 17-260 (359)
104 COG3142 CutC Uncharacterized p 94.1 1.9 4.2E-05 35.6 12.2 107 24-148 11-121 (241)
105 PRK05474 xylose isomerase; Pro 93.8 2.6 5.6E-05 38.3 13.6 73 82-157 73-145 (437)
106 KOG0622|consensus 93.8 1.2 2.6E-05 40.0 11.3 96 49-151 195-292 (448)
107 TIGR02630 xylose_isom_A xylose 93.8 2.2 4.8E-05 38.6 13.1 70 83-155 73-142 (434)
108 TIGR01235 pyruv_carbox pyruvat 93.7 9.6 0.00021 39.6 19.1 197 22-246 554-791 (1143)
109 PF09370 TIM-br_sig_trns: TIM- 93.5 4 8.7E-05 34.7 13.4 124 21-178 95-237 (268)
110 PF02784 Orn_Arg_deC_N: Pyrido 93.3 1.8 3.9E-05 36.5 11.6 95 49-151 143-244 (251)
111 PF03851 UvdE: UV-endonuclease 93.3 0.99 2.1E-05 38.7 9.7 158 83-253 40-211 (275)
112 COG0854 PdxJ Pyridoxal phospha 93.2 1.1 2.3E-05 36.8 9.2 116 6-149 1-129 (243)
113 TIGR01496 DHPS dihydropteroate 93.0 5.1 0.00011 34.1 17.1 83 91-179 108-193 (257)
114 PRK09250 fructose-bisphosphate 93.0 1.6 3.6E-05 38.5 10.8 101 6-109 130-238 (348)
115 cd00945 Aldolase_Class_I Class 92.8 4.1 9E-05 32.5 13.7 122 22-172 14-135 (201)
116 PRK09875 putative hydrolase; P 92.8 6.1 0.00013 34.3 17.4 196 26-251 39-241 (292)
117 PRK11572 copper homeostasis pr 92.6 5.7 0.00012 33.5 14.0 78 25-108 12-93 (248)
118 PLN02681 proline dehydrogenase 92.6 4.9 0.00011 37.2 13.9 131 51-194 99-277 (455)
119 PRK12465 xylose isomerase; Pro 92.5 2.1 4.6E-05 38.6 10.8 70 82-154 83-152 (445)
120 COG0036 Rpe Pentose-5-phosphat 92.4 3.4 7.3E-05 34.1 11.3 204 4-269 2-216 (220)
121 PF03740 PdxJ: Pyridoxal phosp 92.3 0.3 6.6E-06 40.7 5.2 76 50-148 114-189 (239)
122 KOG2367|consensus 92.0 6.2 0.00013 36.3 13.3 196 23-243 81-307 (560)
123 PLN02923 xylose isomerase 91.4 1.1 2.4E-05 40.4 8.0 70 83-155 118-187 (478)
124 TIGR00695 uxuA mannonate dehyd 91.3 1.1 2.4E-05 40.4 8.0 82 24-107 13-102 (394)
125 COG1964 Predicted Fe-S oxidore 91.2 2.6 5.5E-05 38.4 10.1 86 20-112 124-210 (475)
126 PF03740 PdxJ: Pyridoxal phosp 91.0 0.61 1.3E-05 38.9 5.7 145 6-196 1-160 (239)
127 PTZ00170 D-ribulose-5-phosphat 91.0 4 8.8E-05 34.0 10.7 113 1-151 1-121 (228)
128 cd00959 DeoC 2-deoxyribose-5-p 90.8 4.2 9.2E-05 33.2 10.5 132 22-186 18-151 (203)
129 cd02803 OYE_like_FMN_family Ol 90.5 11 0.00025 32.9 15.4 25 88-112 228-252 (327)
130 cd06831 PLPDE_III_ODC_like_AZI 90.5 4.7 0.0001 36.6 11.4 91 50-151 153-247 (394)
131 PRK08005 epimerase; Validated 89.8 7.1 0.00015 32.1 11.0 196 6-263 1-205 (210)
132 cd02932 OYE_YqiM_FMN Old yello 89.8 14 0.0003 32.7 14.7 21 22-42 155-175 (336)
133 PRK06552 keto-hydroxyglutarate 89.7 10 0.00022 31.3 12.8 155 22-249 26-182 (213)
134 PF01791 DeoC: DeoC/LacD famil 89.6 4.4 9.6E-05 33.8 10.0 146 22-188 20-168 (236)
135 PRK10812 putative DNAse; Provi 89.6 8.1 0.00017 33.0 11.6 138 21-193 20-157 (265)
136 COG0134 TrpC Indole-3-glycerol 89.5 5.5 0.00012 33.7 10.2 127 93-263 121-250 (254)
137 TIGR00126 deoC deoxyribose-pho 89.1 11 0.00025 31.0 12.4 132 21-186 18-152 (211)
138 PF00834 Ribul_P_3_epim: Ribul 89.0 5 0.00011 32.8 9.5 82 7-109 1-88 (201)
139 PRK12331 oxaloacetate decarbox 89.0 9.7 0.00021 35.2 12.3 106 23-154 98-207 (448)
140 cd06564 GH20_DspB_LnbB-like Gl 88.6 2.7 5.8E-05 37.1 8.3 64 87-151 16-102 (326)
141 PRK08208 coproporphyrinogen II 88.5 12 0.00026 34.4 12.7 113 24-146 141-266 (430)
142 PRK12858 tagatose 1,6-diphosph 88.5 2.4 5.3E-05 37.6 7.8 116 22-153 50-165 (340)
143 TIGR00629 uvde UV damage endon 88.3 4.7 0.0001 35.3 9.3 65 85-151 49-114 (312)
144 PRK08227 autoinducer 2 aldolas 88.3 12 0.00026 32.0 11.6 141 22-206 95-242 (264)
145 cd07937 DRE_TIM_PC_TC_5S Pyruv 88.1 10 0.00023 32.5 11.4 108 23-154 93-202 (275)
146 cd06562 GH20_HexA_HexB-like Be 87.9 2.3 5E-05 37.9 7.4 64 87-151 17-90 (348)
147 PRK11449 putative deoxyribonuc 87.7 16 0.00035 31.0 12.4 130 22-179 20-149 (258)
148 PF10566 Glyco_hydro_97: Glyco 87.5 3.1 6.8E-05 35.6 7.6 98 87-191 31-129 (273)
149 PLN02540 methylenetetrahydrofo 87.5 14 0.00031 35.1 12.5 119 22-153 16-139 (565)
150 PRK11613 folP dihydropteroate 87.5 9.8 0.00021 32.8 10.7 80 93-178 125-207 (282)
151 PRK14040 oxaloacetate decarbox 87.2 9.2 0.0002 36.7 11.4 106 23-154 99-208 (593)
152 PRK07535 methyltetrahydrofolat 87.2 18 0.00038 30.9 16.1 90 90-192 105-199 (261)
153 PRK03906 mannonate dehydratase 87.1 2.6 5.7E-05 38.0 7.3 85 22-108 11-103 (385)
154 PRK14041 oxaloacetate decarbox 87.0 6 0.00013 36.7 9.7 107 23-154 97-206 (467)
155 PRK11858 aksA trans-homoaconit 87.0 10 0.00023 34.2 11.2 106 24-154 78-198 (378)
156 PF05913 DUF871: Bacterial pro 87.0 11 0.00023 33.9 11.0 156 23-224 16-186 (357)
157 cd07944 DRE_TIM_HOA_like 4-hyd 86.8 10 0.00022 32.5 10.4 108 24-154 85-193 (266)
158 TIGR03128 RuMP_HxlA 3-hexulose 86.6 16 0.00034 29.7 16.0 189 22-268 10-204 (206)
159 COG0329 DapA Dihydrodipicolina 86.6 21 0.00045 31.1 14.6 123 22-172 26-155 (299)
160 PRK07998 gatY putative fructos 86.6 20 0.00044 30.9 16.4 83 124-209 108-197 (283)
161 PRK05692 hydroxymethylglutaryl 86.4 8.2 0.00018 33.4 9.8 112 24-154 82-209 (287)
162 cd00475 CIS_IPPS Cis (Z)-Isopr 86.4 4.5 9.7E-05 33.6 7.8 116 83-207 26-142 (221)
163 PRK12399 tagatose 1,6-diphosph 86.2 4.4 9.5E-05 35.4 7.8 56 93-154 110-165 (324)
164 cd07945 DRE_TIM_CMS Leptospira 86.0 20 0.00044 30.9 12.0 110 24-154 77-201 (280)
165 cd00959 DeoC 2-deoxyribose-5-p 86.0 17 0.00037 29.6 11.8 114 24-172 72-193 (203)
166 PLN02591 tryptophan synthase 86.0 13 0.00028 31.5 10.5 46 22-69 94-140 (250)
167 PRK14837 undecaprenyl pyrophos 86.0 5.9 0.00013 33.1 8.2 112 83-207 32-148 (230)
168 PF01791 DeoC: DeoC/LacD famil 85.9 3.4 7.5E-05 34.5 7.1 127 24-172 79-218 (236)
169 PRK12581 oxaloacetate decarbox 85.8 13 0.00028 34.5 11.2 120 9-154 93-216 (468)
170 PF07071 DUF1341: Protein of u 85.7 8.9 0.00019 31.1 8.7 70 87-181 134-204 (218)
171 TIGR00055 uppS undecaprenyl di 85.7 5.9 0.00013 33.0 8.1 114 84-206 26-140 (226)
172 cd03174 DRE_TIM_metallolyase D 85.6 9.3 0.0002 32.2 9.7 109 24-154 77-200 (265)
173 PRK08745 ribulose-phosphate 3- 85.6 11 0.00025 31.2 9.8 188 22-268 17-217 (223)
174 cd06565 GH20_GcnA-like Glycosy 85.6 8.3 0.00018 33.6 9.5 74 87-172 16-90 (301)
175 PRK14842 undecaprenyl pyrophos 85.6 6 0.00013 33.3 8.2 114 84-206 35-149 (241)
176 PF01026 TatD_DNase: TatD rela 85.5 7.5 0.00016 32.9 9.0 138 21-187 14-154 (255)
177 cd04735 OYE_like_4_FMN Old yel 85.4 26 0.00057 31.2 13.5 25 88-112 235-259 (353)
178 cd00003 PNPsynthase Pyridoxine 85.3 14 0.0003 30.8 10.0 129 21-195 21-158 (234)
179 cd00739 DHPS DHPS subgroup of 85.3 12 0.00027 31.8 10.2 82 91-178 110-194 (257)
180 COG1060 ThiH Thiamine biosynth 85.0 20 0.00042 32.3 11.7 143 88-246 199-353 (370)
181 cd04733 OYE_like_2_FMN Old yel 84.9 27 0.00059 30.9 14.5 21 22-42 150-170 (338)
182 PRK09282 pyruvate carboxylase 84.9 16 0.00036 35.0 11.8 107 23-154 98-207 (592)
183 cd03557 L-arabinose_isomerase 84.8 13 0.00029 34.7 10.9 133 123-269 15-161 (484)
184 TIGR01108 oadA oxaloacetate de 84.7 17 0.00036 34.9 11.7 107 23-154 93-202 (582)
185 PRK14042 pyruvate carboxylase 84.7 30 0.00065 33.3 13.3 107 23-154 98-207 (596)
186 cd00408 DHDPS-like Dihydrodipi 84.7 24 0.00053 30.1 14.3 132 22-189 19-159 (281)
187 cd02933 OYE_like_FMN Old yello 84.4 27 0.00058 31.0 12.3 130 21-185 152-313 (338)
188 COG2896 MoaA Molybdenum cofact 84.3 24 0.00052 31.1 11.6 78 49-146 100-182 (322)
189 PRK06852 aldolase; Validated 84.2 28 0.0006 30.4 13.2 76 27-109 121-209 (304)
190 PRK00507 deoxyribose-phosphate 84.2 21 0.00046 29.6 10.8 106 21-151 22-130 (221)
191 TIGR03217 4OH_2_O_val_ald 4-hy 84.0 21 0.00046 31.6 11.4 108 24-154 90-198 (333)
192 cd07939 DRE_TIM_NifV Streptomy 84.0 24 0.00052 29.9 11.5 106 24-154 72-192 (259)
193 PF00682 HMGL-like: HMGL-like 83.8 9.9 0.00022 31.6 9.0 109 22-154 68-191 (237)
194 COG3142 CutC Uncharacterized p 83.7 24 0.00052 29.4 10.8 92 23-141 75-169 (241)
195 PF00290 Trp_syntA: Tryptophan 83.5 17 0.00036 31.0 10.1 46 22-69 103-149 (259)
196 PRK14833 undecaprenyl pyrophos 83.4 8.7 0.00019 32.2 8.2 116 83-207 30-146 (233)
197 PRK05581 ribulose-phosphate 3- 83.4 16 0.00035 29.8 10.0 200 5-265 3-214 (220)
198 cd00953 KDG_aldolase KDG (2-ke 83.1 29 0.00063 29.8 13.8 129 22-188 21-157 (279)
199 PRK14836 undecaprenyl pyrophos 83.1 8.1 0.00018 32.8 8.0 115 83-206 40-155 (253)
200 PRK14841 undecaprenyl pyrophos 83.1 7.5 0.00016 32.5 7.7 114 84-206 30-144 (233)
201 PRK14840 undecaprenyl pyrophos 83.1 8.3 0.00018 32.6 8.0 115 83-206 48-163 (250)
202 cd01297 D-aminoacylase D-amino 82.7 27 0.00058 31.8 12.0 105 27-153 173-283 (415)
203 PRK14839 undecaprenyl pyrophos 82.7 9.5 0.00021 32.0 8.2 114 83-205 35-149 (239)
204 cd06563 GH20_chitobiase-like T 82.5 11 0.00023 33.8 9.0 65 87-151 17-106 (357)
205 PRK14830 undecaprenyl pyrophos 82.5 9.5 0.00021 32.3 8.2 110 84-206 49-163 (251)
206 PRK04161 tagatose 1,6-diphosph 82.4 7.8 0.00017 34.0 7.8 56 93-154 112-167 (329)
207 cd07943 DRE_TIM_HOA 4-hydroxy- 82.4 27 0.00058 29.7 11.2 106 24-154 88-195 (263)
208 PRK00278 trpC indole-3-glycero 82.3 30 0.00065 29.4 19.2 180 22-263 71-254 (260)
209 PRK10425 DNase TatD; Provision 82.2 30 0.00065 29.4 12.0 125 21-172 15-139 (258)
210 PRK10240 undecaprenyl pyrophos 82.2 11 0.00025 31.4 8.5 114 84-206 20-134 (229)
211 cd07938 DRE_TIM_HMGL 3-hydroxy 82.2 17 0.00037 31.2 9.9 111 25-154 77-203 (274)
212 PF00218 IGPS: Indole-3-glycer 82.2 26 0.00056 29.8 10.7 179 22-263 69-252 (254)
213 COG5016 Pyruvate/oxaloacetate 82.2 26 0.00057 31.7 11.0 119 9-153 86-208 (472)
214 TIGR01858 tag_bisphos_ald clas 82.2 32 0.0007 29.7 11.5 141 24-189 85-231 (282)
215 cd06568 GH20_SpHex_like A subg 82.1 6.5 0.00014 34.8 7.4 65 87-151 17-95 (329)
216 PRK14829 undecaprenyl pyrophos 82.1 11 0.00023 31.8 8.4 115 83-206 40-155 (243)
217 TIGR00676 fadh2 5,10-methylene 81.8 32 0.0007 29.4 13.0 80 22-114 16-99 (272)
218 PLN02746 hydroxymethylglutaryl 81.6 16 0.00035 32.6 9.7 111 24-154 124-251 (347)
219 PRK08195 4-hyroxy-2-oxovalerat 81.6 27 0.00058 31.0 11.1 107 25-154 92-199 (337)
220 COG1831 Predicted metal-depend 81.5 16 0.00035 31.1 9.0 153 22-186 20-191 (285)
221 PF06180 CbiK: Cobalt chelatas 81.5 5.6 0.00012 33.9 6.6 69 21-95 183-262 (262)
222 PRK12999 pyruvate carboxylase; 81.4 20 0.00044 37.3 11.6 121 14-154 619-744 (1146)
223 PRK14834 undecaprenyl pyrophos 81.3 12 0.00027 31.6 8.5 111 83-206 40-155 (249)
224 cd02801 DUS_like_FMN Dihydrour 81.2 29 0.00063 28.5 12.0 118 22-172 68-202 (231)
225 PF01116 F_bP_aldolase: Fructo 81.1 36 0.00078 29.5 14.1 72 122-196 105-185 (287)
226 PRK07709 fructose-bisphosphate 81.1 33 0.00071 29.7 11.2 142 21-190 88-235 (285)
227 PRK02261 methylaspartate mutas 81.1 22 0.00048 27.0 12.4 107 27-172 24-130 (137)
228 COG1902 NemA NADH:flavin oxido 81.0 42 0.0009 30.2 13.1 26 87-112 236-262 (363)
229 PRK06015 keto-hydroxyglutarate 80.9 29 0.00063 28.3 11.7 147 22-241 17-164 (201)
230 TIGR01235 pyruv_carbox pyruvat 80.9 32 0.00069 35.9 12.7 126 9-154 613-742 (1143)
231 PF01116 F_bP_aldolase: Fructo 80.8 37 0.0008 29.4 11.7 146 24-190 86-237 (287)
232 TIGR01163 rpe ribulose-phospha 80.6 27 0.00059 28.2 10.3 71 22-110 12-88 (210)
233 PLN02537 diaminopimelate decar 80.5 38 0.00081 30.8 12.1 94 51-151 170-267 (410)
234 TIGR01232 lacD tagatose 1,6-di 80.5 10 0.00023 33.1 7.9 55 94-154 112-166 (325)
235 PRK08255 salicylyl-CoA 5-hydro 80.5 65 0.0014 32.1 16.2 136 21-185 551-716 (765)
236 PLN02623 pyruvate kinase 80.5 36 0.00078 32.5 12.0 101 22-148 280-380 (581)
237 PRK14831 undecaprenyl pyrophos 80.5 12 0.00027 31.6 8.2 115 83-206 46-161 (249)
238 PRK13753 dihydropteroate synth 80.3 38 0.00081 29.2 15.2 80 92-178 110-197 (279)
239 PRK08599 coproporphyrinogen II 80.3 33 0.00072 30.8 11.6 113 24-146 100-231 (377)
240 PRK08207 coproporphyrinogen II 80.2 30 0.00066 32.4 11.5 22 88-109 336-357 (488)
241 CHL00200 trpA tryptophan synth 80.1 29 0.00062 29.7 10.4 46 22-69 107-153 (263)
242 PRK14827 undecaprenyl pyrophos 80.0 13 0.00028 32.3 8.3 111 83-206 93-208 (296)
243 PRK13523 NADPH dehydrogenase N 79.9 43 0.00094 29.7 13.8 135 21-185 142-304 (337)
244 PF08901 DUF1847: Protein of u 79.8 3.7 8E-05 31.9 4.4 49 21-69 41-90 (157)
245 PRK12738 kbaY tagatose-bisphos 79.7 40 0.00086 29.2 11.9 118 21-151 85-209 (286)
246 cd00288 Pyruvate_Kinase Pyruva 79.6 25 0.00053 32.9 10.5 99 25-148 178-276 (480)
247 COG0159 TrpA Tryptophan syntha 79.5 38 0.00083 28.9 12.5 47 21-69 109-156 (265)
248 PRK14832 undecaprenyl pyrophos 79.5 14 0.00031 31.3 8.3 111 83-206 44-159 (253)
249 PRK05628 coproporphyrinogen II 79.5 38 0.00082 30.4 11.6 112 24-146 108-239 (375)
250 COG4822 CbiK Cobalamin biosynt 79.5 21 0.00046 29.4 8.7 73 21-99 179-262 (265)
251 PRK02929 L-arabinose isomerase 79.5 45 0.00098 31.4 12.3 133 123-269 21-167 (499)
252 PF04748 Polysacc_deac_2: Dive 79.4 29 0.00063 28.6 9.9 99 23-148 108-206 (213)
253 PF01964 ThiC: ThiC family; I 79.3 12 0.00026 33.8 8.0 162 25-194 80-268 (420)
254 PF00150 Cellulase: Cellulase 79.3 7.5 0.00016 32.8 6.8 63 89-153 22-84 (281)
255 PRK09722 allulose-6-phosphate 79.3 34 0.00073 28.6 10.4 105 22-151 70-174 (229)
256 PRK08444 hypothetical protein; 79.2 47 0.001 29.7 14.0 136 88-246 189-340 (353)
257 cd00019 AP2Ec AP endonuclease 79.2 39 0.00084 28.7 12.3 91 47-147 10-101 (279)
258 PRK11904 bifunctional proline 78.7 72 0.0016 33.0 14.4 121 54-188 194-325 (1038)
259 TIGR02668 moaA_archaeal probab 78.7 43 0.00092 28.9 12.1 139 86-256 41-189 (302)
260 COG1809 (2R)-phospho-3-sulfola 78.5 5.5 0.00012 32.9 5.2 79 22-108 91-173 (258)
261 cd00947 TBP_aldolase_IIB Tagat 78.5 30 0.00064 29.8 10.0 143 21-190 80-228 (276)
262 PRK12737 gatY tagatose-bisphos 78.3 39 0.00084 29.2 10.7 142 24-190 87-234 (284)
263 cd00452 KDPG_aldolase KDPG and 78.0 34 0.00074 27.4 12.6 152 22-248 17-169 (190)
264 KOG1602|consensus 77.9 14 0.0003 31.2 7.5 114 83-205 62-179 (271)
265 PRK09722 allulose-6-phosphate 77.9 30 0.00064 28.9 9.6 202 6-268 3-217 (229)
266 COG0800 Eda 2-keto-3-deoxy-6-p 77.8 38 0.00082 27.9 11.0 147 22-240 23-172 (211)
267 TIGR02668 moaA_archaeal probab 77.7 46 0.00099 28.8 11.9 55 86-153 132-187 (302)
268 PF08924 DUF1906: Domain of un 77.7 28 0.00062 26.4 9.2 119 24-149 7-134 (136)
269 PLN02460 indole-3-glycerol-pho 77.6 38 0.00083 30.0 10.6 132 94-263 196-331 (338)
270 cd00954 NAL N-Acetylneuraminic 77.6 46 0.00099 28.7 13.8 133 22-189 22-164 (288)
271 PRK08883 ribulose-phosphate 3- 77.5 37 0.00081 28.1 10.1 144 22-207 69-212 (220)
272 CHL00200 trpA tryptophan synth 77.2 45 0.00098 28.5 14.8 122 89-249 107-230 (263)
273 cd00950 DHDPS Dihydrodipicolin 77.1 46 0.001 28.5 13.3 132 22-189 22-162 (284)
274 PRK12330 oxaloacetate decarbox 77.1 66 0.0014 30.3 12.8 106 23-154 99-210 (499)
275 PRK05660 HemN family oxidoredu 77.0 52 0.0011 29.7 11.7 112 23-145 106-233 (378)
276 PRK07379 coproporphyrinogen II 77.0 52 0.0011 29.9 11.8 112 24-146 115-246 (400)
277 PF02610 Arabinose_Isome: L-ar 76.9 29 0.00064 30.9 9.6 133 122-268 20-166 (359)
278 PRK09061 D-glutamate deacylase 76.9 61 0.0013 30.5 12.6 104 30-154 178-285 (509)
279 PF02679 ComA: (2R)-phospho-3- 76.9 37 0.00081 28.6 9.9 105 22-151 23-133 (244)
280 PF00809 Pterin_bind: Pterin b 76.7 9.1 0.0002 31.4 6.3 83 90-178 105-191 (210)
281 PRK08745 ribulose-phosphate 3- 76.6 43 0.00092 27.9 10.2 104 22-151 73-176 (223)
282 PRK13957 indole-3-glycerol-pho 76.3 46 0.001 28.1 13.5 126 93-263 116-244 (247)
283 PRK09936 hypothetical protein; 76.3 51 0.0011 28.6 12.8 156 22-188 39-208 (296)
284 cd00952 CHBPH_aldolase Trans-o 76.3 52 0.0011 28.7 13.9 134 22-189 30-171 (309)
285 PRK10415 tRNA-dihydrouridine s 76.3 53 0.0012 28.9 11.3 125 22-181 78-219 (321)
286 cd06828 PLPDE_III_DapDC Type I 76.2 57 0.0012 29.1 12.0 96 51-151 156-256 (373)
287 TIGR00539 hemN_rel putative ox 76.2 57 0.0012 29.1 11.9 76 24-109 100-188 (360)
288 PRK08883 ribulose-phosphate 3- 76.1 43 0.00094 27.7 16.3 188 22-268 13-213 (220)
289 PRK00979 tetrahydromethanopter 76.1 53 0.0012 28.7 12.4 112 22-153 108-230 (308)
290 PRK09195 gatY tagatose-bisphos 76.1 42 0.00091 29.0 10.3 143 21-190 85-234 (284)
291 cd07947 DRE_TIM_Re_CS Clostrid 75.9 26 0.00057 30.2 9.1 58 91-150 77-136 (279)
292 PRK10550 tRNA-dihydrouridine s 75.9 55 0.0012 28.7 12.2 123 22-179 76-217 (312)
293 PRK06801 hypothetical protein; 75.8 44 0.00094 29.0 10.4 145 22-190 85-235 (286)
294 PRK05904 coproporphyrinogen II 75.8 54 0.0012 29.3 11.4 112 24-145 103-228 (353)
295 TIGR02660 nifV_homocitr homoci 75.7 60 0.0013 29.1 12.6 166 23-217 51-218 (365)
296 cd00947 TBP_aldolase_IIB Tagat 75.5 42 0.00092 28.9 10.2 71 123-196 102-178 (276)
297 PRK12737 gatY tagatose-bisphos 75.5 45 0.00098 28.8 10.4 72 122-196 106-185 (284)
298 TIGR02313 HpaI-NOT-DapA 2,4-di 75.5 54 0.0012 28.4 15.5 134 22-189 22-164 (294)
299 TIGR01182 eda Entner-Doudoroff 75.4 44 0.00095 27.4 11.6 150 22-245 21-171 (204)
300 PRK07998 gatY putative fructos 75.1 54 0.0012 28.3 11.3 140 22-190 86-231 (283)
301 PRK08091 ribulose-phosphate 3- 75.0 48 0.001 27.7 12.7 104 22-151 79-184 (228)
302 PRK05283 deoxyribose-phosphate 74.8 52 0.0011 28.0 12.4 105 22-151 27-140 (257)
303 smart00481 POLIIIAc DNA polyme 74.8 9 0.0002 24.8 4.8 44 228-272 13-56 (67)
304 COG0036 Rpe Pentose-5-phosphat 74.6 48 0.001 27.5 10.7 103 22-151 72-174 (220)
305 cd00958 DhnA Class I fructose- 74.6 48 0.001 27.5 11.5 140 21-185 21-162 (235)
306 PRK12857 fructose-1,6-bisphosp 74.5 57 0.0012 28.2 11.9 143 21-190 85-234 (284)
307 PRK09195 gatY tagatose-bisphos 74.4 51 0.0011 28.5 10.4 72 122-196 106-185 (284)
308 PRK09249 coproporphyrinogen II 74.3 60 0.0013 30.0 11.7 113 24-146 151-281 (453)
309 TIGR02884 spore_pdaA delta-lac 74.3 48 0.001 27.4 11.7 73 165-250 141-220 (224)
310 PRK14838 undecaprenyl pyrophos 74.1 44 0.00096 28.2 9.7 111 83-206 36-149 (242)
311 PF01081 Aldolase: KDPG and KH 73.8 47 0.001 27.0 10.7 99 21-172 20-118 (196)
312 cd06570 GH20_chitobiase-like_1 73.8 11 0.00024 33.1 6.3 65 87-151 17-88 (311)
313 TIGR00433 bioB biotin syntheta 73.7 57 0.0012 28.0 11.9 16 88-103 158-173 (296)
314 PRK12738 kbaY tagatose-bisphos 73.7 60 0.0013 28.1 13.7 72 122-196 106-185 (286)
315 cd06830 PLPDE_III_ADC Type III 73.7 51 0.0011 30.0 10.9 98 50-151 172-282 (409)
316 smart00812 Alpha_L_fucos Alpha 73.7 21 0.00046 32.3 8.3 114 90-210 83-226 (384)
317 TIGR00674 dapA dihydrodipicoli 73.6 58 0.0013 28.0 13.1 121 22-172 20-149 (285)
318 PRK07535 methyltetrahydrofolat 73.4 57 0.0012 27.8 13.8 95 49-154 105-201 (261)
319 PF03932 CutC: CutC family; I 73.3 49 0.0011 27.0 13.5 98 23-148 74-174 (201)
320 PLN02905 beta-amylase 73.2 18 0.0004 34.6 7.8 46 22-67 287-343 (702)
321 PRK11572 copper homeostasis pr 73.2 48 0.001 28.0 9.7 92 23-141 75-169 (248)
322 PRK05826 pyruvate kinase; Prov 73.2 44 0.00096 31.1 10.4 101 24-149 176-277 (465)
323 PRK04147 N-acetylneuraminate l 73.1 61 0.0013 28.0 13.7 133 22-188 25-165 (293)
324 COG0149 TpiA Triosephosphate i 72.9 35 0.00076 28.9 8.8 104 54-172 82-186 (251)
325 PRK11165 diaminopimelate decar 72.7 72 0.0016 29.2 11.7 94 49-151 171-269 (420)
326 PRK05718 keto-hydroxyglutarate 72.7 53 0.0011 27.1 14.4 147 22-240 25-174 (212)
327 PF04273 DUF442: Putative phos 72.5 32 0.0007 25.1 7.6 45 22-66 15-63 (110)
328 PF01619 Pro_dh: Proline dehyd 72.5 66 0.0014 28.1 12.7 125 52-190 12-146 (313)
329 TIGR02990 ectoine_eutA ectoine 72.4 17 0.00037 30.6 6.9 84 22-110 107-190 (239)
330 cd06843 PLPDE_III_PvsE_like Ty 72.2 69 0.0015 28.7 11.4 95 51-151 153-251 (377)
331 TIGR03581 EF_0839 conserved hy 72.1 27 0.00058 28.8 7.6 65 86-172 133-198 (236)
332 PRK08446 coproporphyrinogen II 72.0 30 0.00066 30.8 8.9 76 24-109 98-186 (350)
333 COG0019 LysA Diaminopimelate d 71.7 43 0.00092 30.5 9.8 94 52-151 180-276 (394)
334 PRK12857 fructose-1,6-bisphosp 71.7 66 0.0014 27.8 13.2 72 122-196 106-185 (284)
335 cd02742 GH20_hexosaminidase Be 71.6 24 0.00052 30.7 8.0 65 87-151 15-92 (303)
336 PRK13361 molybdenum cofactor b 71.6 71 0.0015 28.1 11.4 139 86-256 46-195 (329)
337 PRK07709 fructose-bisphosphate 71.3 68 0.0015 27.8 15.1 72 122-196 109-186 (285)
338 cd06810 PLPDE_III_ODC_DapDC_li 71.2 75 0.0016 28.2 12.3 95 50-151 151-249 (368)
339 TIGR03471 HpnJ hopanoid biosyn 71.2 89 0.0019 29.0 12.8 126 22-179 228-366 (472)
340 smart00481 POLIIIAc DNA polyme 71.1 25 0.00054 22.7 6.4 43 22-64 16-58 (67)
341 PF00701 DHDPS: Dihydrodipicol 70.6 68 0.0015 27.5 12.7 154 22-214 23-185 (289)
342 TIGR01048 lysA diaminopimelate 70.4 85 0.0018 28.5 12.0 96 51-151 178-278 (417)
343 PRK05799 coproporphyrinogen II 70.3 81 0.0017 28.2 11.5 76 24-109 99-187 (374)
344 COG0422 ThiC Thiamine biosynth 70.3 14 0.0003 33.1 6.0 125 22-151 76-224 (432)
345 PLN02801 beta-amylase 70.3 7.6 0.00017 36.0 4.6 46 22-67 38-94 (517)
346 cd01310 TatD_DNAse TatD like p 70.3 60 0.0013 26.7 11.1 127 22-179 16-143 (251)
347 PF01255 Prenyltransf: Putativ 70.1 12 0.00027 31.0 5.6 115 84-207 21-138 (223)
348 PRK05283 deoxyribose-phosphate 70.1 68 0.0015 27.3 10.2 131 27-194 89-232 (257)
349 TIGR02109 PQQ_syn_pqqE coenzym 70.0 28 0.00062 30.9 8.3 79 86-190 38-116 (358)
350 PRK08185 hypothetical protein; 70.0 73 0.0016 27.6 10.4 71 123-196 101-179 (283)
351 PRK14057 epimerase; Provisiona 69.8 69 0.0015 27.2 10.7 105 22-151 86-198 (254)
352 PRK14566 triosephosphate isome 69.8 42 0.00091 28.6 8.7 78 88-172 115-195 (260)
353 TIGR01211 ELP3 histone acetylt 69.7 1E+02 0.0022 29.2 12.1 76 23-109 205-296 (522)
354 TIGR00161 conserved hypothetic 69.6 28 0.00061 29.2 7.7 112 86-208 92-222 (238)
355 PRK05835 fructose-bisphosphate 69.5 74 0.0016 27.9 10.3 71 122-195 106-184 (307)
356 cd06841 PLPDE_III_MccE_like Ty 69.5 69 0.0015 28.7 10.7 94 51-151 152-260 (379)
357 TIGR00167 cbbA ketose-bisphosp 69.4 70 0.0015 27.8 10.2 72 122-196 109-188 (288)
358 TIGR03099 dCO2ase_PEP1 pyridox 69.3 88 0.0019 28.2 12.1 97 50-151 174-275 (398)
359 TIGR00742 yjbN tRNA dihydrouri 69.2 80 0.0017 27.8 11.0 80 22-111 68-164 (318)
360 PRK06294 coproporphyrinogen II 69.1 87 0.0019 28.1 11.4 75 24-108 103-190 (370)
361 PRK14828 undecaprenyl pyrophos 69.0 65 0.0014 27.4 9.7 111 83-206 53-165 (256)
362 PRK06806 fructose-bisphosphate 68.9 76 0.0017 27.4 10.4 130 24-176 87-221 (281)
363 cd00622 PLPDE_III_ODC Type III 68.7 85 0.0018 27.9 12.5 94 51-151 143-239 (362)
364 PRK06245 cofG FO synthase subu 68.7 34 0.00073 30.2 8.4 88 85-191 41-136 (336)
365 TIGR01210 conserved hypothetic 68.7 81 0.0018 27.6 15.1 137 24-179 117-280 (313)
366 PRK13125 trpA tryptophan synth 68.6 70 0.0015 26.8 16.7 61 89-172 89-149 (244)
367 PRK05835 fructose-bisphosphate 68.3 41 0.00088 29.5 8.5 119 24-151 87-211 (307)
368 PRK03620 5-dehydro-4-deoxygluc 68.3 81 0.0017 27.4 14.3 130 22-189 29-166 (303)
369 PLN02705 beta-amylase 68.3 8 0.00017 36.7 4.4 46 22-67 269-325 (681)
370 cd08558 PI-PLCc_eukaryota Cata 68.1 40 0.00086 28.1 8.0 45 1-45 4-53 (226)
371 PRK14567 triosephosphate isome 67.8 36 0.00078 28.9 7.9 78 88-172 105-185 (253)
372 cd00530 PTE Phosphotriesterase 67.8 78 0.0017 27.0 18.3 203 24-253 35-244 (293)
373 COG1830 FbaB DhnA-type fructos 67.4 79 0.0017 27.0 13.4 110 21-154 43-153 (265)
374 cd00946 FBP_aldolase_IIA Class 67.3 93 0.002 27.8 14.7 154 22-195 28-216 (345)
375 cd06842 PLPDE_III_Y4yA_like Ty 67.2 99 0.0021 28.3 11.3 54 51-109 155-212 (423)
376 KOG0369|consensus 67.2 43 0.00093 32.6 8.8 98 22-151 94-191 (1176)
377 PRK09197 fructose-bisphosphate 67.1 94 0.002 27.8 14.1 126 50-195 82-221 (350)
378 PRK11905 bifunctional proline 66.6 1.5E+02 0.0033 31.4 13.5 117 54-187 193-323 (1208)
379 COG4294 Uve UV damage repair e 66.5 36 0.00079 29.5 7.6 66 85-151 70-136 (347)
380 PF00728 Glyco_hydro_20: Glyco 66.4 11 0.00024 33.3 5.0 64 87-151 17-93 (351)
381 COG2108 Uncharacterized conser 66.3 94 0.002 27.5 11.6 103 21-151 65-171 (353)
382 PF09370 TIM-br_sig_trns: TIM- 66.3 36 0.00079 29.0 7.5 82 24-112 140-223 (268)
383 PRK05434 phosphoglyceromutase; 66.2 1E+02 0.0022 29.1 11.2 109 14-136 91-206 (507)
384 cd00945 Aldolase_Class_I Class 66.0 55 0.0012 25.8 8.6 79 22-112 66-153 (201)
385 PF01220 DHquinase_II: Dehydro 66.0 42 0.00091 25.7 7.1 80 129-221 27-106 (140)
386 PRK14835 undecaprenyl pyrophos 65.9 34 0.00073 29.4 7.5 63 83-150 67-136 (275)
387 PLN02951 Molybderin biosynthes 65.9 1E+02 0.0022 27.8 12.6 54 87-153 184-238 (373)
388 cd00951 KDGDH 5-dehydro-4-deox 65.9 88 0.0019 27.0 14.7 129 22-189 22-159 (289)
389 COG0603 Predicted PP-loop supe 65.8 77 0.0017 26.3 11.9 142 22-179 14-177 (222)
390 TIGR00510 lipA lipoate synthas 65.7 75 0.0016 27.8 9.7 145 88-253 94-245 (302)
391 PF06415 iPGM_N: BPG-independe 65.6 31 0.00067 28.7 6.9 104 22-137 15-125 (223)
392 cd02072 Glm_B12_BD B12 binding 65.5 56 0.0012 24.6 12.2 94 29-151 22-115 (128)
393 cd02071 MM_CoA_mut_B12_BD meth 65.5 52 0.0011 24.2 11.6 101 27-172 20-120 (122)
394 COG2100 Predicted Fe-S oxidore 65.3 99 0.0022 27.4 11.3 109 24-152 204-338 (414)
395 TIGR03471 HpnJ hopanoid biosyn 65.2 39 0.00084 31.4 8.4 15 89-103 324-338 (472)
396 PTZ00349 dehydrodolichyl dipho 65.2 44 0.00095 29.4 8.1 98 83-193 45-150 (322)
397 cd08627 PI-PLCc_gamma1 Catalyt 65.2 19 0.00042 30.0 5.6 64 1-64 4-87 (229)
398 PRK02308 uvsE putative UV dama 65.0 38 0.00083 29.6 7.8 95 49-151 50-154 (303)
399 PRK13111 trpA tryptophan synth 64.7 88 0.0019 26.6 13.4 46 22-69 105-151 (258)
400 TIGR00126 deoC deoxyribose-pho 64.7 79 0.0017 26.0 11.4 111 27-172 76-194 (211)
401 cd08598 PI-PLC1c_yeast Catalyt 64.6 46 0.001 27.8 7.8 44 1-44 4-52 (231)
402 cd06549 GH18_trifunctional GH1 64.5 15 0.00032 32.0 5.2 43 23-65 93-143 (298)
403 COG0084 TatD Mg-dependent DNas 64.5 89 0.0019 26.6 15.8 135 17-179 13-147 (256)
404 PLN02429 triosephosphate isome 64.4 46 0.00099 29.2 8.1 78 88-172 167-245 (315)
405 PRK07114 keto-hydroxyglutarate 64.4 83 0.0018 26.2 12.6 152 23-246 29-184 (222)
406 COG0296 GlgB 1,4-alpha-glucan 64.2 18 0.00039 34.8 6.0 61 24-106 168-232 (628)
407 PF14488 DUF4434: Domain of un 64.2 22 0.00048 28.0 5.7 65 86-151 18-85 (166)
408 PLN02803 beta-amylase 64.2 13 0.00028 34.8 4.8 46 22-67 108-164 (548)
409 KOG1643|consensus 64.1 80 0.0017 25.9 8.7 81 90-177 108-189 (247)
410 PRK04452 acetyl-CoA decarbonyl 64.1 1E+02 0.0022 27.2 12.0 52 132-193 163-214 (319)
411 PTZ00372 endonuclease 4-like p 64.0 1.1E+02 0.0024 28.1 10.7 58 90-151 178-239 (413)
412 cd00423 Pterin_binding Pterin 63.9 90 0.0019 26.4 15.0 80 91-177 110-193 (258)
413 PRK13347 coproporphyrinogen II 63.9 42 0.0009 31.1 8.3 111 24-145 152-281 (453)
414 cd04726 KGPDC_HPS 3-Keto-L-gul 63.8 75 0.0016 25.4 15.2 180 24-262 16-199 (202)
415 PLN02561 triosephosphate isome 63.7 44 0.00094 28.4 7.7 78 88-172 108-186 (253)
416 TIGR00538 hemN oxygen-independ 63.6 42 0.00092 31.0 8.3 112 24-145 151-280 (455)
417 COG3453 Uncharacterized protei 63.5 60 0.0013 24.2 7.5 77 24-112 18-99 (130)
418 PRK11809 putA trifunctional tr 63.3 1.6E+02 0.0035 31.4 13.0 116 56-188 275-404 (1318)
419 PF07488 Glyco_hydro_67M: Glyc 63.3 21 0.00044 31.1 5.6 57 87-151 56-112 (328)
420 cd06840 PLPDE_III_Bif_AspK_Dap 63.2 1.1E+02 0.0025 27.3 11.2 92 50-151 159-251 (368)
421 PF01373 Glyco_hydro_14: Glyco 63.0 26 0.00057 31.8 6.5 46 22-67 17-73 (402)
422 PLN02161 beta-amylase 62.7 15 0.00032 34.3 4.9 45 22-66 118-173 (531)
423 PF07745 Glyco_hydro_53: Glyco 62.6 1.1E+02 0.0024 27.1 13.0 150 22-189 25-201 (332)
424 cd06569 GH20_Sm-chitobiase-lik 62.5 46 0.001 30.8 8.2 65 87-151 21-117 (445)
425 TIGR03249 KdgD 5-dehydro-4-deo 62.2 1E+02 0.0023 26.6 14.3 128 22-188 27-163 (296)
426 PRK13210 putative L-xylulose 5 62.0 84 0.0018 26.6 9.4 95 47-148 16-111 (284)
427 PRK05434 phosphoglyceromutase; 62.0 96 0.0021 29.3 10.2 81 51-148 100-181 (507)
428 cd02874 GH18_CFLE_spore_hydrol 61.9 19 0.00042 31.3 5.5 43 23-65 92-142 (313)
429 TIGR00381 cdhD CO dehydrogenas 61.9 1.2E+02 0.0027 27.4 10.4 117 57-194 150-280 (389)
430 PRK05301 pyrroloquinoline quin 61.7 60 0.0013 29.1 8.8 79 86-190 47-125 (378)
431 PLN00197 beta-amylase; Provisi 61.6 16 0.00034 34.4 4.9 46 22-67 128-184 (573)
432 PRK13209 L-xylulose 5-phosphat 61.5 1E+02 0.0022 26.2 10.1 107 32-148 7-116 (283)
433 cd06544 GH18_narbonin Narbonin 61.5 25 0.00054 29.8 5.9 37 24-60 103-146 (253)
434 PRK08961 bifunctional aspartat 61.4 1.3E+02 0.0028 30.5 11.7 92 50-151 650-742 (861)
435 PRK07534 methionine synthase I 61.4 1.2E+02 0.0026 27.0 14.8 144 50-206 48-198 (336)
436 PRK07094 biotin synthase; Prov 61.2 1.1E+02 0.0024 26.6 11.0 21 22-42 71-94 (323)
437 TIGR02666 moaA molybdenum cofa 61.0 1.2E+02 0.0025 26.7 13.3 54 86-152 137-191 (334)
438 cd08592 PI-PLCc_gamma Catalyti 60.9 27 0.00058 29.1 5.8 63 1-63 4-86 (229)
439 TIGR00190 thiC thiamine biosyn 60.9 97 0.0021 28.2 9.5 136 23-172 142-279 (423)
440 cd07948 DRE_TIM_HCS Saccharomy 60.8 1.1E+02 0.0023 26.2 10.2 168 21-217 48-217 (262)
441 TIGR00162 conserved hypothetic 60.5 38 0.00083 27.3 6.6 26 87-112 33-58 (188)
442 cd08593 PI-PLCc_delta Catalyti 60.4 33 0.00072 29.2 6.3 64 1-64 4-87 (257)
443 cd04724 Tryptophan_synthase_al 60.1 1E+02 0.0022 25.8 12.2 46 22-69 92-138 (242)
444 TIGR00677 fadh2_euk methylenet 60.0 1.1E+02 0.0025 26.3 13.4 80 22-114 17-100 (281)
445 PRK08610 fructose-bisphosphate 59.9 1.2E+02 0.0025 26.4 11.0 142 21-190 88-235 (286)
446 PF08915 tRNA-Thr_ED: Archaea- 59.9 58 0.0013 24.9 6.9 60 88-154 58-118 (138)
447 TIGR00167 cbbA ketose-bisphosp 59.9 1.2E+02 0.0025 26.4 11.1 144 21-190 88-238 (288)
448 PRK06687 chlorohydrolase; Vali 59.8 1.4E+02 0.003 27.2 11.0 107 27-151 109-216 (419)
449 PF01120 Alpha_L_fucos: Alpha- 59.8 20 0.00043 31.9 5.3 116 89-210 92-239 (346)
450 PRK09206 pyruvate kinase; Prov 59.7 1.4E+02 0.0029 28.0 10.7 36 26-61 177-212 (470)
451 TIGR01501 MthylAspMutase methy 59.5 76 0.0016 24.1 13.3 107 27-172 22-128 (134)
452 smart00642 Aamy Alpha-amylase 59.5 36 0.00077 26.8 6.1 44 22-65 20-88 (166)
453 cd04734 OYE_like_3_FMN Old yel 59.5 1.3E+02 0.0028 26.7 15.2 21 22-42 142-162 (343)
454 PTZ00300 pyruvate kinase; Prov 59.3 1.1E+02 0.0024 28.4 10.0 39 24-62 150-188 (454)
455 PF07555 NAGidase: beta-N-acet 59.1 1.2E+02 0.0027 26.5 10.0 94 91-191 18-116 (306)
456 cd00946 FBP_aldolase_IIA Class 59.0 1.3E+02 0.0029 26.8 10.1 146 26-191 115-278 (345)
457 PF06415 iPGM_N: BPG-independe 59.0 92 0.002 25.9 8.6 23 87-109 45-67 (223)
458 PLN02411 12-oxophytodienoate r 59.0 7.4 0.00016 35.3 2.4 21 22-42 166-186 (391)
459 cd07587 ML_beta-AS mammalian-l 58.6 1.4E+02 0.003 26.8 11.5 116 24-148 33-155 (363)
460 PF01207 Dus: Dihydrouridine s 58.5 42 0.00091 29.3 7.0 122 22-178 67-205 (309)
461 PRK13361 molybdenum cofactor b 58.4 1.3E+02 0.0028 26.4 14.4 73 87-172 139-215 (329)
462 TIGR03381 agmatine_aguB N-carb 58.3 96 0.0021 26.2 9.2 63 82-149 13-84 (279)
463 TIGR00737 nifR3_yhdG putative 58.2 1.3E+02 0.0028 26.3 14.5 141 7-185 64-221 (319)
464 cd07575 Xc-1258_like Xanthomon 58.2 43 0.00094 28.0 6.9 62 83-148 15-77 (252)
465 PRK08610 fructose-bisphosphate 58.2 1.2E+02 0.0027 26.2 16.2 72 122-196 109-186 (286)
466 PRK13352 thiamine biosynthesis 58.1 1.2E+02 0.0026 27.7 9.6 137 21-178 143-285 (431)
467 PRK07455 keto-hydroxyglutarate 58.0 97 0.0021 24.9 14.7 154 22-248 25-178 (187)
468 PF00724 Oxidored_FMN: NADH:fl 58.0 6.8 0.00015 34.8 2.0 21 22-42 150-170 (341)
469 cd02803 OYE_like_FMN_family Ol 57.7 1.3E+02 0.0028 26.2 12.3 95 81-179 134-241 (327)
470 KOG0470|consensus 57.4 36 0.00079 33.2 6.7 72 23-105 256-328 (757)
471 cd07570 GAT_Gln-NAD-synth Glut 57.4 46 0.00099 27.9 6.9 64 83-149 14-81 (261)
472 cd03465 URO-D_like The URO-D _ 57.2 1.3E+02 0.0028 26.1 12.0 158 79-263 155-322 (330)
473 TIGR03581 EF_0839 conserved hy 57.2 92 0.002 25.8 8.0 74 21-110 135-211 (236)
474 COG0710 AroD 3-dehydroquinate 57.1 1.2E+02 0.0025 25.5 12.1 41 22-62 15-58 (231)
475 TIGR03569 NeuB_NnaB N-acetylne 56.7 40 0.00087 29.8 6.5 67 87-153 15-98 (329)
476 TIGR00010 hydrolase, TatD fami 56.5 1.1E+02 0.0024 25.1 12.9 127 22-179 16-143 (252)
477 PRK09485 mmuM homocysteine met 56.5 1.4E+02 0.0029 26.1 13.7 148 50-207 49-210 (304)
478 TIGR03849 arch_ComA phosphosul 56.4 1.2E+02 0.0026 25.5 14.9 123 23-172 14-140 (237)
479 cd08631 PI-PLCc_delta4 Catalyt 56.3 39 0.00086 28.7 6.1 64 1-64 4-87 (258)
480 PLN02591 tryptophan synthase 56.1 1.3E+02 0.0027 25.6 15.6 175 23-249 18-217 (250)
481 TIGR01307 pgm_bpd_ind 2,3-bisp 56.0 1.8E+02 0.004 27.4 11.6 109 14-136 87-202 (501)
482 PRK10605 N-ethylmaleimide redu 56.0 8.9 0.00019 34.4 2.4 21 22-42 160-180 (362)
483 PF00809 Pterin_bind: Pterin b 55.9 1.1E+02 0.0024 24.9 15.7 151 94-268 25-187 (210)
484 PF12683 DUF3798: Protein of u 55.8 46 0.001 28.5 6.4 58 86-153 115-172 (275)
485 PRK05395 3-dehydroquinate dehy 55.7 94 0.002 24.0 8.8 76 133-221 32-107 (146)
486 cd02930 DCR_FMN 2,4-dienoyl-Co 55.7 1.5E+02 0.0033 26.4 11.0 62 84-146 73-152 (353)
487 KOG3111|consensus 55.5 1.1E+02 0.0024 24.9 10.4 41 92-141 181-221 (224)
488 COG0159 TrpA Tryptophan syntha 55.2 1.4E+02 0.0029 25.7 10.0 99 22-149 29-152 (265)
489 PRK13404 dihydropyrimidinase; 55.1 1.5E+02 0.0032 27.7 10.4 109 25-154 139-268 (477)
490 PF00150 Cellulase: Cellulase 55.1 1.2E+02 0.0027 25.2 13.8 162 84-254 58-246 (281)
491 cd08596 PI-PLCc_epsilon Cataly 55.0 43 0.00093 28.4 6.1 64 1-64 4-87 (254)
492 TIGR00262 trpA tryptophan synt 54.9 1.3E+02 0.0029 25.5 16.0 58 89-172 103-160 (256)
493 cd06836 PLPDE_III_ODC_DapDC_li 54.8 1.6E+02 0.0035 26.4 11.6 84 60-151 165-255 (379)
494 cd02810 DHOD_DHPD_FMN Dihydroo 54.7 1.4E+02 0.003 25.6 15.0 75 22-110 112-198 (289)
495 TIGR00262 trpA tryptophan synt 54.7 1.3E+02 0.0029 25.4 13.5 47 22-69 103-149 (256)
496 PF05913 DUF871: Bacterial pro 54.6 28 0.00062 31.1 5.3 55 87-151 13-67 (357)
497 COG0135 TrpF Phosphoribosylant 54.6 20 0.00043 29.5 4.0 47 14-65 57-103 (208)
498 PRK03170 dihydrodipicolinate s 54.5 1.4E+02 0.003 25.6 14.7 132 22-189 23-163 (292)
499 smart00642 Aamy Alpha-amylase 54.5 60 0.0013 25.5 6.6 66 88-154 19-93 (166)
500 PRK06801 hypothetical protein; 54.4 1.4E+02 0.0031 25.8 16.7 70 124-196 108-186 (286)
No 1
>COG3622 Hfi Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-48 Score=312.86 Aligned_cols=253 Identities=40% Similarity=0.669 Sum_probs=240.4
Q ss_pred cccccccccccccccccCHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCc----cccCCCCCc
Q psy13372 5 SFKLAANLTLLFNDLAANYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVD----ENFGYAAVK 80 (273)
Q Consensus 5 ~~k~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~----~~~~~~~~~ 80 (273)
|.||+.|++|+|++. ++.+.++.++++||.+||+.+||+ .+.+.+++.++++||+...++.+.+ +++|.+..|
T Consensus 1 mprfAAnlsMlf~e~--pFl~Rf~aaa~aGF~~ve~lfPyd-~~~~~i~~~l~~~~L~~~Lfn~pagDw~~gErg~aalp 77 (260)
T COG3622 1 MPRFAANLSMLFTEV--PFLERFAAAAKAGFRGVEFLFPYD-YDAEELKARLDFNGLTQVLFNLPAGDWAAGERGIAALP 77 (260)
T ss_pred CccchhhHHhhhccC--cHHHHHHHHHHcCCceEEEcCCCc-ccHHHHHHHHHHcCCceeeeCCCCcchhhhhcchhcCC
Confidence 559999999999999 999999999999999999999998 8899999999999999999998776 567777788
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCc
Q psy13372 81 GKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGY 160 (273)
Q Consensus 81 ~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~ 160 (273)
.+.+.....+.++++.|..||++.|++.+|..+.+.+ .+..+..+++.|+..++.++++||++.|||+++.++|+.
T Consensus 78 ~r~~~fr~~v~~a~~ya~aLg~~~vh~mag~~p~~~~----~~~~~~t~venLr~aAd~l~~~gi~~liEplN~~d~PG~ 153 (260)
T COG3622 78 GREEEFRLGVALAIEYATALGCKQVHCLAGIPPEGVD----TEAMWATFVENLRYAADLLAAEGIRLLIEPLNLRDMPGY 153 (260)
T ss_pred CchHHHHhHHHHHHHHHHHhCCCceeeeecCCCCCcc----HHHHHHHHHHHHHHHHHHHHhcCCEEEEecCCCCCCCCc
Confidence 8888889999999999999999999999998866543 788899999999999999999999999999999989999
Q ss_pred ccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhcCCcceeEEeccCCCCCCCCCCCcccHHHHHHHHH
Q psy13372 161 YLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAPDRQEPHARGEIDYAYVFELLA 240 (273)
Q Consensus 161 ~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~~vHi~d~~~~~~~g~~G~id~~~i~~~L~ 240 (273)
++.+..++..++ +++++||+.+.+|++|+|..++++...++++.++|.||+|.|+|+|++||+ |+|||.-+++.|.
T Consensus 154 ~l~~~~~al~li---~~V~~~Nl~lq~D~YH~Q~~eGnL~~~lr~~~~~ighvQiAdvP~RhEPgt-GEINY~~lf~~l~ 229 (260)
T COG3622 154 FLTSQEQALALI---DEVGRPNLFLQLDLYHAQIMEGNLTRLLREYLPKIGHVQIADVPGRHEPGT-GEINYPYLFKALD 229 (260)
T ss_pred ccccHHHHHHHH---HHhCCCCeEeehhHHHHHHhccHHHHHHHHhhhhhceeeecCCCCCCCCCC-CccccHHHHHHHH
Confidence 999999999999 999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HcCCCceEEEeeecCCChHHHHHHHHHhh
Q psy13372 241 REGYEGYVGLEYKPQGNTKEGLEEFLKTF 269 (273)
Q Consensus 241 ~~gy~g~~~lE~~~~~~~~~~~~~~~~~~ 269 (273)
+.||+||+..|++|.+++.+++. |++.+
T Consensus 230 ~~GY~GwIGcEy~p~g~T~~gL~-wf~~~ 257 (260)
T COG3622 230 AMGYDGWIGCEYKPRGDTEAGLG-WFRPY 257 (260)
T ss_pred HcCCCCceeeeeccCCCchHHHH-HHHHh
Confidence 99999999999999999999999 99875
No 2
>PRK09989 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-44 Score=307.67 Aligned_cols=252 Identities=33% Similarity=0.587 Sum_probs=223.2
Q ss_pred ccccccccccccccccCHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCc-c---ccCCCCCch
Q psy13372 6 FKLAANLTLLFNDLAANYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVD-E---NFGYAAVKG 81 (273)
Q Consensus 6 ~k~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~-~---~~~~~~~~~ 81 (273)
.|+++|++|+|.+. |+++.++.++++||++||++.+++ .+.++++++++++||++++++.+.. . .++.+.++.
T Consensus 2 ~~~~~~~~~~~~~~--~l~~~l~~~~~~Gfd~VEl~~~~~-~~~~~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~ 78 (258)
T PRK09989 2 PRFAANLSMMFTEV--PFIERFAAARKAGFDAVEFLFPYD-YSTLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPG 78 (258)
T ss_pred CceeeehhhhhcCC--CHHHHHHHHHHcCCCEEEECCccc-CCHHHHHHHHHHcCCcEEEeccCCCccCCCCCcccCCCc
Confidence 49999999999998 999999999999999999998765 7789999999999999999886432 1 111223455
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcc
Q psy13372 82 KESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYY 161 (273)
Q Consensus 82 ~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~ 161 (273)
.+...++.++++|+.|+.+|++.|++++|..+...+ .++.++.+++.|++++++|++.||++++||+++..+++.+
T Consensus 79 ~~~~~~~~l~~~i~~A~~lg~~~v~v~~g~~~~~~~----~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l~~~~~~~~~ 154 (258)
T PRK09989 79 REHEARADIDLALEYALALNCEQVHVMAGVVPAGED----AERYRAVFIDNLRYAADRFAPHGKRILVEALSPGVKPHYL 154 (258)
T ss_pred cHHHHHHHHHHHHHHHHHhCcCEEEECccCCCCCCC----HHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCc
Confidence 566678899999999999999999998887643321 4677889999999999999999999999998875455678
Q ss_pred cCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhcCCcceeEEeccCCCCCCCCCCCcccHHHHHHHHHH
Q psy13372 162 LSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAPDRQEPHARGEIDYAYVFELLAR 241 (273)
Q Consensus 162 ~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~~vHi~d~~~~~~~g~~G~id~~~i~~~L~~ 241 (273)
+++.+++.+++ +.+++|+||+++|++|++..++++.+.++.++++|.|||++|.++++.||+ |.+||+.++++|++
T Consensus 155 ~~~~~~~~~ll---~~v~~~~v~l~lD~~h~~~~~~~~~~~i~~~~~ri~hvHi~D~~~~~~pG~-G~id~~~i~~al~~ 230 (258)
T PRK09989 155 FSSQYQALAIV---EEVARDNVFIQLDTFHAQKVDGNLTHLIRDYAGKYAHVQIAGLPDRHEPDD-GEINYPWLFRLFDE 230 (258)
T ss_pred cCCHHHHHHHH---HHcCCCCeEEEeehHhHHHcCCCHHHHHHHhhhhEEEEEECCCCCCCCCCC-CCcCHHHHHHHHHH
Confidence 89999999999 999999999999999999988899999999999999999999878899999 99999999999999
Q ss_pred cCCCceEEEeeecCCChHHHHHHHHHhh
Q psy13372 242 EGYEGYVGLEYKPQGNTKEGLEEFLKTF 269 (273)
Q Consensus 242 ~gy~g~~~lE~~~~~~~~~~~~~~~~~~ 269 (273)
.||+|++++|+++.+++.++++ |++.+
T Consensus 231 ~Gy~g~is~E~~~~~~~~~~~~-~~~~~ 257 (258)
T PRK09989 231 VGYQGWIGCEYKPRGLTEEGLG-WFDAW 257 (258)
T ss_pred cCCCeEEEEEEeeCCCCHHHHH-hHhhc
Confidence 9999999999999999999999 99765
No 3
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=100.00 E-value=1.9e-44 Score=307.32 Aligned_cols=253 Identities=38% Similarity=0.671 Sum_probs=221.7
Q ss_pred cccccccccccccccccCHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCcc-cc---CCCCCc
Q psy13372 5 SFKLAANLTLLFNDLAANYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDE-NF---GYAAVK 80 (273)
Q Consensus 5 ~~k~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~-~~---~~~~~~ 80 (273)
|+|+++|+++.|.+. ++++.++.++++||++||++.++. .+++++++.++++||++++++.+.+. .. +.+.++
T Consensus 1 ~~~~~~~~~~~~~~~--~l~~~l~~~a~~Gf~~VEl~~~~~-~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 77 (258)
T PRK09997 1 MLRFSANLSMLFGEY--DFLARFEKAAQCGFRGVEFMFPYD-YDIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIP 77 (258)
T ss_pred CCceeeeeehhccCC--CHHHHHHHHHHhCCCEEEEcCCCC-CCHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCC
Confidence 469999999999999 999999999999999999998765 78999999999999999986643321 11 111234
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCc
Q psy13372 81 GKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGY 160 (273)
Q Consensus 81 ~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~ 160 (273)
+..+...+.++++|++|+.||++.|++++|..+.... .++.++.+++.|++++++|+++||++++||++++.++++
T Consensus 78 ~~~~~~~~~~~~~i~~a~~lga~~i~~~~g~~~~~~~----~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~~ 153 (258)
T PRK09997 78 GREEEFRDGVAAAIRYARALGNKKINCLVGKTPAGFS----SEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIPGF 153 (258)
T ss_pred CcHHHHHHHHHHHHHHHHHhCCCEEEECCCCCCCCCC----HHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCCCC
Confidence 5556667899999999999999999998886533321 566789999999999999999999999999876433567
Q ss_pred ccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhcCCcceeEEeccCCCCCCCCCCCcccHHHHHHHHH
Q psy13372 161 YLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAPDRQEPHARGEIDYAYVFELLA 240 (273)
Q Consensus 161 ~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~~vHi~d~~~~~~~g~~G~id~~~i~~~L~ 240 (273)
++.+.+++.+++ +.+++|++|+++|++|+...+.++.++++.+++||.|+|+||++++..||+ |.+||..+++.|+
T Consensus 154 ~~~~~~~~~~ll---~~v~~~~v~l~~D~~h~~~~g~~~~~~~~~~~~ri~~vHikD~~~~~~~G~-G~id~~~i~~aL~ 229 (258)
T PRK09997 154 HLTGTRQALKLI---DDVGCCNLKIQYDIYHMQRMEGELTNTMTQWADKIGHLQIADNPHRGEPGT-GEINYDYLFKVIE 229 (258)
T ss_pred ccCCHHHHHHHH---HHhCCCCEEEEeEHHHhhhcCCcHHHHHHHhhCcccEEEeCCCCCCCCCCC-CcCCHHHHHHHHH
Confidence 899999999999 999999999999999999988899999999999999999999988889999 9999999999999
Q ss_pred HcCCCceEEEeeecCCChHHHHHHHHHhh
Q psy13372 241 REGYEGYVGLEYKPQGNTKEGLEEFLKTF 269 (273)
Q Consensus 241 ~~gy~g~~~lE~~~~~~~~~~~~~~~~~~ 269 (273)
+.||+||+++|+.|.+....|++ ||+++
T Consensus 230 ~~Gy~G~~~~E~~p~~~~~~s~~-~l~~~ 257 (258)
T PRK09997 230 NSDYNGWVGCEYKPQTTTEAGLR-WMDPY 257 (258)
T ss_pred HhCCCeEEEEEEecCCCcHHHHH-hhhhh
Confidence 99999999999999999999999 99875
No 4
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=100.00 E-value=1.1e-43 Score=302.07 Aligned_cols=249 Identities=42% Similarity=0.715 Sum_probs=217.9
Q ss_pred cccccccccccccccCHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCc-c---ccCCCCCchh
Q psy13372 7 KLAANLTLLFNDLAANYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVD-E---NFGYAAVKGK 82 (273)
Q Consensus 7 k~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~-~---~~~~~~~~~~ 82 (273)
|+|+|+++.+.+. +++++++.++++||++||++.+++ ...++++++++++||++++++.+.. . ..+...+++.
T Consensus 2 ~~~~~~~~~~~~~--~l~e~~~~~~e~G~~~vEl~~~~~-~~~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~ 78 (254)
T TIGR03234 2 RFAANLSMLFTEL--PFLERFAAAAQAGFTGVEYLFPYD-WDAEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGR 78 (254)
T ss_pred ceeEehhHhhcCC--CHHHHHHHHHHcCCCEEEecCCcc-CCHHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCcc
Confidence 8999998999888 999999999999999999998765 6789999999999999999875432 1 1111123444
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCccc
Q psy13372 83 ESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYL 162 (273)
Q Consensus 83 ~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~ 162 (273)
.++..+.++++|+.|+.||++.|++++|..+...+ .++.++.+++.|++++++|+++||++++||+++...++.++
T Consensus 79 ~~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~----~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~~~l 154 (254)
T TIGR03234 79 EEEFREGVALAIAYARALGCPQVNCLAGKRPAGVS----PEEARATLVENLRYAADALDRIGLTLLIEPINSFDMPGFFL 154 (254)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECcCCCCCCCC----HHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCCChh
Confidence 45567899999999999999999999886543211 57789999999999999999999999999976543356788
Q ss_pred CCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhcCCcceeEEeccCCCCCCCCCCCcccHHHHHHHHHHc
Q psy13372 163 SSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAPDRQEPHARGEIDYAYVFELLARE 242 (273)
Q Consensus 163 ~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~~vHi~d~~~~~~~g~~G~id~~~i~~~L~~~ 242 (273)
.|++++.+++ +.+++|++|+++|++|+...++++.+.++.++++|.|||++|++++..||+ |.+||+.+++.|++.
T Consensus 155 ~t~~~~~~li---~~v~~~~~~i~~D~~h~~~~~e~~~~~i~~~~~~i~~vHi~D~~~~~~~G~-G~id~~~il~~L~~~ 230 (254)
T TIGR03234 155 TTTEQALAVI---DDVGRENLKLQYDLYHMQRMGGDLARTLAAYAAHIGHVQIADNPGRHEPGT-GEINYRFLFAVLDRL 230 (254)
T ss_pred cCHHHHHHHH---HHhCCCCEeEeeehhhhhhhCCCHHHHHHHhhccEeEEEeCCCCCCCCCCC-CccCHHHHHHHHHHC
Confidence 9999999999 999999999999999999999999999999999999999999888889999 999999999999999
Q ss_pred CCCceEEEeeecCCChHHHHHHHHH
Q psy13372 243 GYEGYVGLEYKPQGNTKEGLEEFLK 267 (273)
Q Consensus 243 gy~g~~~lE~~~~~~~~~~~~~~~~ 267 (273)
||+|++++|+.|..++.+++. |||
T Consensus 231 gy~g~~~~E~~~~~~~~~~~~-~~~ 254 (254)
T TIGR03234 231 GYDGWVGLEYKPLTDTEASLG-WLK 254 (254)
T ss_pred CCCceEEEEEecCCCchhhcC-CCC
Confidence 999999999999999999998 875
No 5
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=100.00 E-value=6.5e-40 Score=282.07 Aligned_cols=250 Identities=16% Similarity=0.173 Sum_probs=210.9
Q ss_pred ccccccccccccccccCHHHHHHHHHHcCCCeEEecCC----C--C--CCCHHHHHHHHHHcCCeeEEEecCCc-cccC-
Q psy13372 6 FKLAANLTLLFNDLAANYLDKYRVAAELGFRYIESWFP----P--V--GVTLEQLVAAQTRHGLKQVLINTEVD-ENFG- 75 (273)
Q Consensus 6 ~k~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~----~--~--~~~~~~~~~~l~~~gL~i~~~~~~~~-~~~~- 75 (273)
||+|+|+ +.+... ++++.++.++++||++||++.. + + ....+++++.++++||++++++.... +..+
T Consensus 1 m~lg~~t-~~~~~~--~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~ 77 (275)
T PRK09856 1 MKTGMFT-CGHQRL--PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNM 77 (275)
T ss_pred Cceeeee-hhheeC--CHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCccc
Confidence 7999999 567777 9999999999999999999852 1 1 13478999999999999998764211 1111
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCC
Q psy13372 76 YAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQH 155 (273)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~ 155 (273)
...+++.|+..++.+++.|++|+.+|++.|++++|..+...+ .++.++++++.|++++++|+++||++++||+.++
T Consensus 78 ~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~----~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~~~ 153 (275)
T PRK09856 78 MLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTP----PNVIWGRLAENLSELCEYAENIGMDLILEPLTPY 153 (275)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCC----HHHHHHHHHHHHHHHHHHHHHcCCEEEEecCCCC
Confidence 224567889999999999999999999999998875433211 6678999999999999999999999999998754
Q ss_pred CCCCcccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhcCCcceeEEeccCCCC----CCCCCCCccc
Q psy13372 156 SVPGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAPDR----QEPHARGEID 231 (273)
Q Consensus 156 ~~~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~~vHi~d~~~~----~~~g~~G~id 231 (273)
.+.++.|++++.+++ +.+++|++|+++|++|++..+.++.+.++.++++|.|+|++|+.+. ..||+ |.+|
T Consensus 154 --~~~~~~t~~~~~~l~---~~~~~~~v~~~~D~~h~~~~~~~~~~~i~~~~~rI~~vHi~D~~~~~~~~~~pG~-G~id 227 (275)
T PRK09856 154 --ESNVVCNANDVLHAL---ALVPSPRLFSMVDICAPYVQAEPVMSYFDKLGDKLRHLHIVDSDGASDTHYIPGE-GKMP 227 (275)
T ss_pred --cccccCCHHHHHHHH---HHcCCCcceeEEeecchhcCCCCHHHHHHHhCCcEEEEEEEcCCCCCCCCcCCCC-CCCC
Confidence 456789999999999 9999999999999999988889999999999999999999997543 27899 9999
Q ss_pred HHHHHHHHHHcCCCceEEEeeec------CCChHHHHHHHHHhh
Q psy13372 232 YAYVFELLAREGYEGYVGLEYKP------QGNTKEGLEEFLKTF 269 (273)
Q Consensus 232 ~~~i~~~L~~~gy~g~~~lE~~~------~~~~~~~~~~~~~~~ 269 (273)
|..++++|++.||+|++++|+.+ ...+.++++ |+|+.
T Consensus 228 ~~~i~~~L~~~gy~g~~~lE~~~~~~~~p~~~~~~~~~-~~~~~ 270 (275)
T PRK09856 228 LRELMRDIIDRGYEGYCTVELVTMYMNEPRLYARQALE-RFRAL 270 (275)
T ss_pred HHHHHHHHHHcCCCceEEEEeccccccCHHHHHHHHHH-HHHHH
Confidence 99999999999999999999864 234778888 88764
No 6
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=100.00 E-value=2.6e-37 Score=266.42 Aligned_cols=246 Identities=17% Similarity=0.170 Sum_probs=202.0
Q ss_pred cccccccccccccccCHHHHHHHHHHcCCCeEEecCCCC----------CCCHHHHHHHHHHcCCeeEEEecCCccccCC
Q psy13372 7 KLAANLTLLFNDLAANYLDKYRVAAELGFRYIESWFPPV----------GVTLEQLVAAQTRHGLKQVLINTEVDENFGY 76 (273)
Q Consensus 7 k~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~----------~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~ 76 (273)
|+|++++.+..+. +++++++.++++||++||++.+.. ....+++++.++++||.+++++........+
T Consensus 4 ~~~~~~~~~~~~~--~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l 81 (279)
T TIGR00542 4 PLGIYEKALPKGE--CWLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPSMCLSAHRRFPL 81 (279)
T ss_pred ccceehhhCCCCC--CHHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCceeeecCCCccCcC
Confidence 8999985555577 999999999999999999985421 1235789999999999999887532111112
Q ss_pred -CCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCC
Q psy13372 77 -AAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQH 155 (273)
Q Consensus 77 -~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~ 155 (273)
+++++.|+..++.++++|++|+.+|++.|+++++...... ..++.++++++.|++++++|+++||++++||++
T Consensus 82 ~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~----~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~-- 155 (279)
T TIGR00542 82 GSKDKAVRQQGLEIMEKAIQLARDLGIRTIQLAGYDVYYEE----HDEETRRRFREGLKEAVELAARAQVTLAVEIMD-- 155 (279)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHhCCCEEEecCcccccCc----CCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCC--
Confidence 2467889999999999999999999999988654322221 156779999999999999999999999999974
Q ss_pred CCCCcccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhcCCcceeEEeccCC-C--CC-CCCCCCccc
Q psy13372 156 SVPGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAP-D--RQ-EPHARGEID 231 (273)
Q Consensus 156 ~~~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~~vHi~d~~-~--~~-~~g~~G~id 231 (273)
+.++.|+.++.+++ +.+++|++|+++|++|+...+.++.+.++..+++|.|||++|+. + ++ ++|+ |.+|
T Consensus 156 ---~~~~~t~~~~~~li---~~v~~~~v~~~~D~~h~~~~~~~~~~~i~~~~~~i~~vHikD~~~~~~~~~p~G~-G~id 228 (279)
T TIGR00542 156 ---TPFMSSISKWLKWD---HYLNSPWFTLYPDIGNLSAWDNDVQMELQLGIDKIVAIHLKDTKPGQFKDVPFGE-GCVD 228 (279)
T ss_pred ---CchhcCHHHHHHHH---HHcCCCceEEEeCcChhhhccCCHHHHHHHhhhhEEEEEeCCCCCCccCCcCCCC-CccC
Confidence 34788999999999 99999999999999999888889999999889999999999963 2 23 5699 9999
Q ss_pred HHHHHHHHHHcCCCceEEEeeecCC------ChHHHHHHHHHh
Q psy13372 232 YAYVFELLAREGYEGYVGLEYKPQG------NTKEGLEEFLKT 268 (273)
Q Consensus 232 ~~~i~~~L~~~gy~g~~~lE~~~~~------~~~~~~~~~~~~ 268 (273)
|..++++|++.||+|++++|.+... ...++.+ |+++
T Consensus 229 ~~~~~~aL~~~gy~G~l~iE~~~~~~~~~~~~~~~~~~-~l~~ 270 (279)
T TIGR00542 229 FERCFKTLKQLNYRGPFLIEMWSEKAEEPVAEIIQARD-WIEA 270 (279)
T ss_pred HHHHHHHHHHhCCceeEEEEecCCcccChHHHHHHHHH-HHHH
Confidence 9999999999999999999986432 3556666 7765
No 7
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=100.00 E-value=4.1e-37 Score=265.84 Aligned_cols=246 Identities=17% Similarity=0.173 Sum_probs=201.7
Q ss_pred ccccccccccccccccCHHHHHHHHHHcCCCeEEecCCC----------CCCCHHHHHHHHHHcCCeeEEEecCCc--cc
Q psy13372 6 FKLAANLTLLFNDLAANYLDKYRVAAELGFRYIESWFPP----------VGVTLEQLVAAQTRHGLKQVLINTEVD--EN 73 (273)
Q Consensus 6 ~k~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~----------~~~~~~~~~~~l~~~gL~i~~~~~~~~--~~ 73 (273)
||+|++...+..+. ++++.++.++++||++||++... +..+.+++++.++++||.+++++.... ..
T Consensus 3 ~~~g~~~~~~~~~~--~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~ 80 (284)
T PRK13210 3 HPLGIYEKALPKHL--SWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFP 80 (284)
T ss_pred cccchhhhhcCCCC--CHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcC
Confidence 78999886666667 99999999999999999998531 112468899999999999998764321 12
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCC
Q psy13372 74 FGYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVN 153 (273)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~ 153 (273)
+ .+++++.+++.++.++++|+.|+.||++.|+++.+..... + ..+..++++++.|++++++|+++||++++||++
T Consensus 81 ~-~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~---~-~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~ 155 (284)
T PRK13210 81 F-GSRDPATRERALEIMKKAIRLAQDLGIRTIQLAGYDVYYE---E-KSEETRQRFIEGLAWAVEQAAAAQVMLAVEIMD 155 (284)
T ss_pred C-CCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCcccccc---c-ccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecC
Confidence 2 2357788999999999999999999999999864322111 1 156789999999999999999999999999974
Q ss_pred CCCCCCcccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhcCCcceeEEeccCC-------C--C-CC
Q psy13372 154 QHSVPGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAP-------D--R-QE 223 (273)
Q Consensus 154 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~~vHi~d~~-------~--~-~~ 223 (273)
+.++.+++++.+++ +.+++|++|+++|++|+...+.++.+.++.++++|.|+|+||+. + + .+
T Consensus 156 -----~~~~~~~~~~~~l~---~~v~~~~~~~~~D~~h~~~~~~~~~~~l~~~~~~i~~vHikD~~~~~~~~~g~~~~~p 227 (284)
T PRK13210 156 -----TPFMNSISKWKKWD---KEIDSPWLTVYPDVGNLSAWGNDVWSELKLGIDHIAAIHLKDTYAVTETSKGQFRDVP 227 (284)
T ss_pred -----ccccCCHHHHHHHH---HHcCCCceeEEecCChhhhcCCCHHHHHHHhcCeEEEEEeccccccccCCCCcccccc
Confidence 45789999999999 99999999999999999877889999999999999999999972 2 1 35
Q ss_pred CCCCCcccHHHHHHHHHHcCCCceEEEeeecC--CCh----HHHHHHHHHh
Q psy13372 224 PHARGEIDYAYVFELLAREGYEGYVGLEYKPQ--GNT----KEGLEEFLKT 268 (273)
Q Consensus 224 ~g~~G~id~~~i~~~L~~~gy~g~~~lE~~~~--~~~----~~~~~~~~~~ 268 (273)
||+ |.+||..++++|++.||+|++++|+++. .++ .++.+ |+++
T Consensus 228 ~G~-G~id~~~~~~~L~~~gy~G~~~~E~~~~~~~~~~~~~~~~~~-~l~~ 276 (284)
T PRK13210 228 FGE-GCVDFVGIFKTLKELNYRGPFLIEMWTEKAEEPRAEIKQARR-FLEP 276 (284)
T ss_pred CCC-cccCHHHHHHHHHHcCCCceEEEEEecCcccCHHHHHHHHHH-HHHH
Confidence 799 9999999999999999999999997643 343 34445 5554
No 8
>KOG4518|consensus
Probab=100.00 E-value=5.6e-37 Score=238.35 Aligned_cols=255 Identities=40% Similarity=0.673 Sum_probs=231.2
Q ss_pred ccccccccccccccccCHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCc----cccCCCCCch
Q psy13372 6 FKLAANLTLLFNDLAANYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVD----ENFGYAAVKG 81 (273)
Q Consensus 6 ~k~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~----~~~~~~~~~~ 81 (273)
.|++.|+.++|+++ ++.+.+..++..||+.||+..|+. ++.+.+++..+++.+.-..++.+.+ +.+|+++.|.
T Consensus 3 ~~~aanln~lft~~--~l~~r~~~a~~~gf~~vev~~p~~-e~a~~~~~~~~~~~~~~~~~~a~~~~~d~~~~G~~svpg 79 (264)
T KOG4518|consen 3 NRVAANLNMLFTNL--PLLQRYGAAASAGFKLVEVSIPYT-EPAEKLREAADEYHLKHTLINAPPGNWDDGFRGLASVPG 79 (264)
T ss_pred chhhhhhhhHhhcc--HHHHHHHHHHhCCceEEEecCCCC-ChHHHHHHhhhcchhhhhhccCCCCChhhhccCcccCCc
Confidence 48899999999998 999999999999999999999987 7888999988888777666665543 4456666788
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcc
Q psy13372 82 KESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYY 161 (273)
Q Consensus 82 ~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~ 161 (273)
......+.+..+|+.|+++||.+|++..|.++.+.+ .+...+...+.|+-.++..+++.+.-.|||.+.+..|+++
T Consensus 80 ~~k~FR~~Ld~ai~yAkalgC~rIHlmAG~~k~g~d----~~~~~~ty~eNlr~AA~~l~~~kligliEPINkyt~PgY~ 155 (264)
T KOG4518|consen 80 AKKEFRKSLDTAIEYAKALGCCRIHLMAGIPKSGDD----LENAHQTYSENLRFAAEKLKEHKLIGLIEPINKYTIPGYH 155 (264)
T ss_pred hHHHHHHHHHHHHHHHHHhCCceEEEeccCCCCCch----HHHHHHHHHHHHHHHHHHhhhhceeeeecchhcccCcchh
Confidence 778888999999999999999999999998876633 5667778889999999999999999999999987779999
Q ss_pred cCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhcCCcceeEEeccCCCCCCCCCCCcccHHHHHHHHHH
Q psy13372 162 LSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAPDRQEPHARGEIDYAYVFELLAR 241 (273)
Q Consensus 162 ~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~~vHi~d~~~~~~~g~~G~id~~~i~~~L~~ 241 (273)
+++.+++..++ ..+.++|+.+..|++|++.-.+++...++++.++|+|+++.+.|+|++|...|++||..+|+.|++
T Consensus 156 ln~y~~Aa~Il---q~v~~~Nlqlq~D~fH~Q~~~Gni~~~~re~k~~iGhiQvAQVP~Rgepd~~GEldy~fiF~~l~~ 232 (264)
T KOG4518|consen 156 LNNYEDAADIL---QMVQSNNLQLQYDTFHAQQINGNIGAIMRELKDYIGHIQVAQVPNRGEPDTRGELDYHFIFDELRS 232 (264)
T ss_pred cCCHHHHHHHH---HHhcCCceehhHHHHHHHHhcChHHHHHHHHHHhhceeeeeecCCCCCCCCCCccccHHHHHHHHH
Confidence 99999999999 999999999999999999889999999999999999999999999999998899999999999999
Q ss_pred cCCCceEEEeeecCCChHHHHHHHHHh-hcc
Q psy13372 242 EGYEGYVGLEYKPQGNTKEGLEEFLKT-FDL 271 (273)
Q Consensus 242 ~gy~g~~~lE~~~~~~~~~~~~~~~~~-~~~ 271 (273)
.||+||+..|+.|+.++++++. |+++ .++
T Consensus 233 ~gy~g~iGcEYkPk~dtvegl~-Wi~~k~g~ 262 (264)
T KOG4518|consen 233 IGYSGVIGCEYKPKLDTVEGLN-WIENKMGL 262 (264)
T ss_pred hCCCceeeeeeccCcCcccchh-hhhhhcCC
Confidence 9999999999999999999999 9995 443
No 9
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=100.00 E-value=3.4e-36 Score=260.03 Aligned_cols=247 Identities=17% Similarity=0.151 Sum_probs=201.9
Q ss_pred ccccccccccccccccCHHHHHHHHHHcCCCeEEecCCC----------CCCCHHHHHHHHHHcCCeeEEEecCCc--cc
Q psy13372 6 FKLAANLTLLFNDLAANYLDKYRVAAELGFRYIESWFPP----------VGVTLEQLVAAQTRHGLKQVLINTEVD--EN 73 (273)
Q Consensus 6 ~k~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~----------~~~~~~~~~~~l~~~gL~i~~~~~~~~--~~ 73 (273)
.+||+.-.....+. ++++.++.++++||++||++... .....+++++.++++||++++++.... ..
T Consensus 8 ~~~~~~~~~~~~~~--~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~ 85 (283)
T PRK13209 8 IPLGIYEKALPAGE--CWLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRFP 85 (283)
T ss_pred ccceeecccCCCCC--CHHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeEEecccccccC
Confidence 46777655555556 99999999999999999998531 112367899999999999998764321 12
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCC
Q psy13372 74 FGYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVN 153 (273)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~ 153 (273)
+ .+++++.|+..++.+++.|+.|+.||+++|+++++......+ .+..++++++.|++++++|+++||++++||+.
T Consensus 86 ~-~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~----~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~ 160 (283)
T PRK13209 86 L-GSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAGYDVYYEQA----NNETRRRFIDGLKESVELASRASVTLAFEIMD 160 (283)
T ss_pred C-CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccccccc----HHHHHHHHHHHHHHHHHHHHHhCCEEEEeecC
Confidence 2 235678899999999999999999999999986543222211 46778999999999999999999999999974
Q ss_pred CCCCCCcccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhcCCcceeEEeccCCC----CCCCCCCCc
Q psy13372 154 QHSVPGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAPD----RQEPHARGE 229 (273)
Q Consensus 154 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~~vHi~d~~~----~~~~g~~G~ 229 (273)
+.++.+++++++++ +.+++|++|+++|++|+...+.++.+.++.++++|.|+|+||... ..++|+ |.
T Consensus 161 -----~~~~~~~~~~~~ll---~~v~~~~lgl~~D~~h~~~~~~~~~~~i~~~~~~i~~vHikD~~~~~~~~~~~G~-G~ 231 (283)
T PRK13209 161 -----TPFMNSISKALGYA---HYLNSPWFQLYPDIGNLSAWDNDVQMELQAGIGHIVAFHVKDTKPGVFKNVPFGE-GV 231 (283)
T ss_pred -----CcccCCHHHHHHHH---HHhCCCccceEeccchHHHhcCCHHHHHHhCcCcEEEEEeccCCCCCCceeCCCC-Cc
Confidence 45788999999999 999999999999999998777888899999999999999999742 235799 99
Q ss_pred ccHHHHHHHHHHcCCCceEEEeeecC------CChHHHHHHHHHhh
Q psy13372 230 IDYAYVFELLAREGYEGYVGLEYKPQ------GNTKEGLEEFLKTF 269 (273)
Q Consensus 230 id~~~i~~~L~~~gy~g~~~lE~~~~------~~~~~~~~~~~~~~ 269 (273)
+||+.++++|++.||+|++++|+... ....++++ |+|+.
T Consensus 232 id~~~i~~~L~~~gy~g~~~~E~~~~~~~~~~~~~~~~~~-~l~~~ 276 (283)
T PRK13209 232 VDFERCFKTLKQSGYCGPYLIEMWSETAEDPAAEVAKARD-FVKAR 276 (283)
T ss_pred cCHHHHHHHHHHcCCCceEEEEecCCccccHHHHHHHHHH-HHHHH
Confidence 99999999999999999999997632 24667777 87764
No 10
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=100.00 E-value=7.4e-36 Score=265.14 Aligned_cols=249 Identities=17% Similarity=0.200 Sum_probs=204.4
Q ss_pred Ccccccccccccccc-----------cccCHHHHHHHHHHcCCCeEEec----CCCCCCC-------HHHHHHHHHHcCC
Q psy13372 4 PSFKLAANLTLLFND-----------LAANYLDKYRVAAELGFRYIESW----FPPVGVT-------LEQLVAAQTRHGL 61 (273)
Q Consensus 4 ~~~k~~~~~~~~~~~-----------~~~~~~~~l~~~~~~G~~~vEl~----~~~~~~~-------~~~~~~~l~~~gL 61 (273)
|--||++.+|++ .. ...++.+.++.++++||++||++ +|++ .+ .++++++++++||
T Consensus 5 ~~~~f~~~~w~~-~~~~~~~~g~~~~~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~-~~~~e~~~~~~~lk~~L~~~GL 82 (382)
T TIGR02631 5 PEDRFTFGLWTV-GWVGRDPFGDATRTALDPVEAVHKLAELGAYGVTFHDDDLIPFG-APPQERDQIVRRFKKALDETGL 82 (382)
T ss_pred CCCceEEEeecc-CCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCEEEecccccCCCC-CChhHHHHHHHHHHHHHHHhCC
Confidence 344888888544 31 12489999999999999999999 4554 22 4689999999999
Q ss_pred eeEEEecC--C-----ccccCCCCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHH
Q psy13372 62 KQVLINTE--V-----DENFGYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLI 134 (273)
Q Consensus 62 ~i~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~ 134 (273)
+++++.+. . .+.+ .+++++.|+.+++.++++|++|++|||+.|++++|..+...+...+.+..|+++++.|+
T Consensus 83 ~v~~v~~nl~~~~~~~~g~l-as~d~~vR~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~ 161 (382)
T TIGR02631 83 KVPMVTTNLFSHPVFKDGGF-TSNDRSVRRYALRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREALN 161 (382)
T ss_pred eEEEeeccccCCccccCCCC-CCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHHHHHHH
Confidence 99876642 1 1122 23578899999999999999999999999999998764432111124678999999999
Q ss_pred HHHHHHhhC--CcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCCCc-eeEeeecccccccCCChHHHHHhc--CCc
Q psy13372 135 YACAELERH--SLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGISN-VQLQFDFFNAQRICGDLTHTFGAC--RDL 209 (273)
Q Consensus 135 ~l~~~a~~~--gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~g~~~D~~h~~~~~~~~~~~i~~~--~~~ 209 (273)
+++++|+++ ||+++|||+++...++++++|++++.+++ +.+++|+ +|+++|++|+++.+.++...+... .++
T Consensus 162 ~lae~A~~~G~GV~laLEp~p~~~~~~~ll~T~~~al~li---~~v~~pn~vgl~lDvgH~~~~g~n~~~~i~~~l~~~k 238 (382)
T TIGR02631 162 LLAAYAEDQGYGLRFALEPKPNEPRGDILLPTVGHALAFI---ETLERPELFGLNPETGHEQMAGLNFTHGIAQALWAGK 238 (382)
T ss_pred HHHHHHHhhCCCcEEEEccCCCCCCcceecCCHHHHHHHH---HHcCCccceeEEEechhHhhcCCCHHHHHHHHHhCCC
Confidence 999999986 69999999977544567999999999999 9999999 799999999999999999999866 899
Q ss_pred ceeEEeccCCCCC-----CCCCCCcccHHH-HHHHHHHcCCCceEEEeeecCC-ChH
Q psy13372 210 IGHVQIAQAPDRQ-----EPHARGEIDYAY-VFELLAREGYEGYVGLEYKPQG-NTK 259 (273)
Q Consensus 210 i~~vHi~d~~~~~-----~~g~~G~id~~~-i~~~L~~~gy~g~~~lE~~~~~-~~~ 259 (273)
+.|||++|+++++ .+|. |++|+.. ++..|++.||+||+.+|++|.+ +..
T Consensus 239 l~HvhlnD~~g~~~D~hL~~G~-G~l~~~~~~l~~L~~~GY~G~i~~d~~P~r~~~~ 294 (382)
T TIGR02631 239 LFHIDLNGQRGIKFDQDLRFGH-GDLKAAFFLVDLLESGGYQGPRHFDYKPSRTEDY 294 (382)
T ss_pred EEEEecCCCCCCCccCCcCCCC-CCHHHHHHHHHHHHHCCCCCceeEEecCCcCCch
Confidence 9999999987653 5699 9999994 9999999999999999999854 444
No 11
>PRK01060 endonuclease IV; Provisional
Probab=100.00 E-value=3e-35 Score=253.83 Aligned_cols=249 Identities=18% Similarity=0.152 Sum_probs=200.0
Q ss_pred cccccccccccccccccCHHHHHHHHHHcCCCeEEecCC--C--C-----CCCHHHHHHHHHHcCCeeEEE--ecCCccc
Q psy13372 5 SFKLAANLTLLFNDLAANYLDKYRVAAELGFRYIESWFP--P--V-----GVTLEQLVAAQTRHGLKQVLI--NTEVDEN 73 (273)
Q Consensus 5 ~~k~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~--~--~-----~~~~~~~~~~l~~~gL~i~~~--~~~~~~~ 73 (273)
|||+|..++ .+. ++++.++.++++||++||++.. . . ....++++++++++||++.++ +.+...+
T Consensus 1 ~~~~g~~~~-~~~----~~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~n 75 (281)
T PRK01060 1 MKLIGAHVS-AAG----GLEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPEDILVHAPYLIN 75 (281)
T ss_pred CCeEEEeee-cCC----CHHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCceEEecceEec
Confidence 789998773 222 5799999999999999999852 1 1 123688999999999995322 2232123
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCC
Q psy13372 74 FGYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVN 153 (273)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~ 153 (273)
. .+++++.|+.+++.+++.+++|++||++.|++|+|....... .++.|+++++.|+++++ .++||+|++||++
T Consensus 76 l-~~~d~~~r~~s~~~~~~~i~~A~~lga~~vv~h~G~~~~~~~----~~~~~~~~~e~l~~l~~--~~~gv~l~iEn~~ 148 (281)
T PRK01060 76 L-GNPNKEILEKSRDFLIQEIERCAALGAKLLVFHPGSHLGDID----EEDCLARIAESLNEALD--KTQGVTIVLENTA 148 (281)
T ss_pred C-CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCc----HHHHHHHHHHHHHHHHh--cCCCCEEEEecCC
Confidence 3 346788999999999999999999999999999986432211 33588999999999855 4679999999986
Q ss_pred CCCCCCcccCCHHHHHHHHHHHhhcCCCc-eeEeeecccccccCCChH----HHHHhcC-----CcceeEEeccCCC---
Q psy13372 154 QHSVPGYYLSSFRVAERLIRELRAHGISN-VQLQFDFFNAQRICGDLT----HTFGACR-----DLIGHVQIAQAPD--- 220 (273)
Q Consensus 154 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~g~~~D~~h~~~~~~~~~----~~i~~~~-----~~i~~vHi~d~~~--- 220 (273)
.. ...+..+++++.+++ +.+++++ +|+|+|++|+...+.++. +.++.++ ++|.|+|++|+..
T Consensus 149 ~~--~~~~~~~~~~~~~l~---~~v~~~~~vg~~lD~gH~~~~g~d~~~~~~~~~~~~~~~~~~~~i~~vHl~D~~~~~~ 223 (281)
T PRK01060 149 GQ--GSELGRRFEELARII---DGVEDKSRVGVCLDTCHAFAAGYDLREDFEGVLAEFDRIVGLDRLKVMHLNDSKNEFG 223 (281)
T ss_pred CC--CCcccCCHHHHHHHH---HhcCCcccEEEEEeHHhHhhcCCChHHHHHHHHHHHHHhhChhheeEEEEecCCCccc
Confidence 53 345678999999999 9999998 999999999999888888 8888775 5999999999732
Q ss_pred ----CC-CCCCCCcccHHHHHHHHHHcCCCce-EEEeeecCC-ChHHHHHHHHHhhccc
Q psy13372 221 ----RQ-EPHARGEIDYAYVFELLAREGYEGY-VGLEYKPQG-NTKEGLEEFLKTFDLK 272 (273)
Q Consensus 221 ----~~-~~g~~G~id~~~i~~~L~~~gy~g~-~~lE~~~~~-~~~~~~~~~~~~~~~~ 272 (273)
++ .+|+ |.+||+.+++.|++.||+|+ +++|+.... ...++++ +||+..|.
T Consensus 224 ~~~d~H~~~G~-G~id~~~~~~~L~~~~y~g~~l~lE~~~~~~~~~~~i~-~~~~~~~~ 280 (281)
T PRK01060 224 SRKDRHANLGE-GTIGFDALRYIVHDPRFDGIPKILETPYVGEIWKEEIA-MLREQQFD 280 (281)
T ss_pred CCCCcccCCcC-CcCCHHHHHHHHhCcccCCCeEEEeCCCCCcchHHHHH-HHHHhccC
Confidence 22 5799 99999999999999999986 999987544 5889999 99997764
No 12
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=100.00 E-value=3.3e-34 Score=247.13 Aligned_cols=242 Identities=16% Similarity=0.184 Sum_probs=198.1
Q ss_pred cccccccccccccCHHHHHHHHHHcCCCeEEecCCC----C-----CCCHHHHHHHHHHc-CCeeEEEecCCccccCCCC
Q psy13372 9 AANLTLLFNDLAANYLDKYRVAAELGFRYIESWFPP----V-----GVTLEQLVAAQTRH-GLKQVLINTEVDENFGYAA 78 (273)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~----~-----~~~~~~~~~~l~~~-gL~i~~~~~~~~~~~~~~~ 78 (273)
|+..+ .++ . ++++.++.++++||++||+.... . ....+++++.++++ ++.++.+..+. .+. .++
T Consensus 2 ~~~~~-~~~-~--~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~-~~~-~~~ 75 (279)
T cd00019 2 GAHVS-AAG-F--GLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYL-INL-ASP 75 (279)
T ss_pred ccccc-ccc-c--cHHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCce-ecc-CCC
Confidence 45553 333 5 99999999999999999997531 1 13468999999999 78877665332 122 235
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCC
Q psy13372 79 VKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVP 158 (273)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~ 158 (273)
+++.|+++++.+++++++|+.||++.+++++|..... + .++.++.+++.|++++++|+++||++++||+++. .
T Consensus 76 ~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~-~----~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~--~ 148 (279)
T cd00019 76 DKEKREKSIERLKDEIERCEELGIRLLVFHPGSYLGQ-S----KEEGLKRVIEALNELIDKAETKGVVIALETMAGQ--G 148 (279)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCC-C----HHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCC--C
Confidence 6779999999999999999999999999999865322 1 6778999999999999999999999999998753 3
Q ss_pred CcccCCHHHHHHHHHHHhhcC-CCceeEeeecccccccCCC------hHHHHHhcCCc-----ceeEEeccCCC------
Q psy13372 159 GYYLSSFRVAERLIRELRAHG-ISNVQLQFDFFNAQRICGD------LTHTFGACRDL-----IGHVQIAQAPD------ 220 (273)
Q Consensus 159 ~~~~~~~~~~~~li~~~~~~~-~~~~g~~~D~~h~~~~~~~------~~~~i~~~~~~-----i~~vHi~d~~~------ 220 (273)
..++.|++++.+++ +.++ +|++|+++|++|+...+.+ +.++++.+.++ |.|+|+||...
T Consensus 149 ~~~~~t~~~~~~li---~~v~~~~~~g~~lD~~h~~~~g~~~~~~~~~~~~l~~~~~~i~~~~i~~vHikD~~~~~~~~~ 225 (279)
T cd00019 149 NEIGSSFEELKEII---DLIKEKPRVGVCIDTCHIFAAGYDISTVEGFEKVLEEFDKVIGLEYLKAIHLNDSKGELGSGK 225 (279)
T ss_pred CCCCCCHHHHHHHH---HhcCCCCCeEEEEEhhhHHhccCCCCCHHHHHHHHHHHHHHhChhheeEEEEEcCCCcccCCC
Confidence 44689999999999 9999 9999999999999888877 67788877665 59999999631
Q ss_pred -C-CCCCCCCcccHHHHHHHHHHcCC-CceEEEeeecCC----ChHHHHHHHHHh
Q psy13372 221 -R-QEPHARGEIDYAYVFELLAREGY-EGYVGLEYKPQG----NTKEGLEEFLKT 268 (273)
Q Consensus 221 -~-~~~g~~G~id~~~i~~~L~~~gy-~g~~~lE~~~~~----~~~~~~~~~~~~ 268 (273)
+ .++|+ |.+||..+++.|++.|| +|++++|+.+.. ...+|+. |||+
T Consensus 226 ~~~~~~G~-G~id~~~~l~~L~~~~y~~g~~~lE~~~~~~~~~~~~~~~~-~~~~ 278 (279)
T cd00019 226 DRHEPIGE-GDIDGEELFKELKKDPYQNIPLILETPSENRDAAKIKKEIK-LLRK 278 (279)
T ss_pred ccccCCCC-CCcCCHHHHHHHHhCcccCCCEEEeCCCCCccchhHHHHHH-HHhc
Confidence 2 35799 99999999999999999 999999997653 5778888 8875
No 13
>PRK12677 xylose isomerase; Provisional
Probab=100.00 E-value=6.2e-33 Score=246.65 Aligned_cols=248 Identities=17% Similarity=0.188 Sum_probs=199.5
Q ss_pred Ccccccccccccccc----c------ccCHHHHHHHHHHcCCCeEEecC----CCCCC------CHHHHHHHHHHcCCee
Q psy13372 4 PSFKLAANLTLLFND----L------AANYLDKYRVAAELGFRYIESWF----PPVGV------TLEQLVAAQTRHGLKQ 63 (273)
Q Consensus 4 ~~~k~~~~~~~~~~~----~------~~~~~~~l~~~~~~G~~~vEl~~----~~~~~------~~~~~~~~l~~~gL~i 63 (273)
|--||++-+|++... + ..+++++++.++++||++||++. |++.. ..++++++++++||+|
T Consensus 4 ~~~~f~~~~w~~~~~~~~~~g~~~~~~~~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v 83 (384)
T PRK12677 4 PEDKFSFGLWTVGWQGRDPFGDATRPPLDPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVV 83 (384)
T ss_pred ccceeEEEEeeccCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCee
Confidence 445888777433311 1 23799999999999999999994 34311 2689999999999999
Q ss_pred EEEecCC--c-----cccCCCCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHH
Q psy13372 64 VLINTEV--D-----ENFGYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYA 136 (273)
Q Consensus 64 ~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l 136 (273)
+++++.. . +.+ .+++++.|+.+++.++++|++|++|||+.|++++|..+.+.+...+.+..|++++++|+++
T Consensus 84 ~~v~~n~f~~p~~~~g~l-ts~d~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l 162 (384)
T PRK12677 84 PMVTTNLFTHPVFKDGAF-TSNDRDVRRYALRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLL 162 (384)
T ss_pred EEEecCCCCCccccCCcC-CCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHH
Confidence 9875421 1 122 3457889999999999999999999999999999976443211122567899999999999
Q ss_pred HHHHhh--CCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCCCc-eeEeeecccccccCCChHHHHHhcC--Ccce
Q psy13372 137 CAELER--HSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGISN-VQLQFDFFNAQRICGDLTHTFGACR--DLIG 211 (273)
Q Consensus 137 ~~~a~~--~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~g~~~D~~h~~~~~~~~~~~i~~~~--~~i~ 211 (273)
+++|++ +||+++|||+++......+++|.+++..++ +.+++|+ +|+++|++|+++.+.++...+.... ++|.
T Consensus 163 ~~~A~~~G~gV~laIEpkp~ep~~~~~l~t~~~al~li---~~lg~~~~vGv~lD~gH~~m~g~n~~~~i~~~l~~~kL~ 239 (384)
T PRK12677 163 AAYVKDQGYDLRFALEPKPNEPRGDILLPTVGHALAFI---ATLEHPEMVGLNPEVGHEQMAGLNFTHGIAQALWAGKLF 239 (384)
T ss_pred HHHHHhcCCCcEEEEccCCCCCCCCeeeCCHHHHHHHH---HHhCCCccEEEeeechHHHhcCCCHHHHHHHHHhCCcEE
Confidence 999998 559999999876433467999999999999 9999886 9999999999999999999887754 8999
Q ss_pred eEEeccCC-CC---C-CCCCCCcccHH-HHHHHHHHcCCCceEEEeeecCC
Q psy13372 212 HVQIAQAP-DR---Q-EPHARGEIDYA-YVFELLAREGYEGYVGLEYKPQG 256 (273)
Q Consensus 212 ~vHi~d~~-~~---~-~~g~~G~id~~-~i~~~L~~~gy~g~~~lE~~~~~ 256 (273)
|||+.|.+ ++ + .+|. |++++. .++..|++.||+|++.+|++|..
T Consensus 240 HvHlnD~~~g~~D~dL~~G~-G~~~~~~~~l~~L~~~gY~G~~~~D~~p~r 289 (384)
T PRK12677 240 HIDLNGQRGIKYDQDLRFGH-GDLKSAFFLVDLLENGGYDGPRHFDYKPSR 289 (384)
T ss_pred EEEecCCCCCCCCCCCCCCC-CchhhHHHHHHHHHHcCCCCceeEEeeCCC
Confidence 99999964 33 2 4599 999999 57999999999999999999853
No 14
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-32 Score=236.91 Aligned_cols=250 Identities=24% Similarity=0.279 Sum_probs=204.9
Q ss_pred ccccccccccccccccCHHHHHHHHHHcCCCeEEecCC--CC--CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCch
Q psy13372 6 FKLAANLTLLFNDLAANYLDKYRVAAELGFRYIESWFP--PV--GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKG 81 (273)
Q Consensus 6 ~k~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~--~~--~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~ 81 (273)
|++++.+. .+... ++++.++.++++||++||+... +. ....+++++.++++||.+++++..... + .++++.
T Consensus 3 m~~~~~t~-~~~~~--~l~~~l~~~~~~G~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~-~-~~~~~~ 77 (274)
T COG1082 3 MKLGIFTN-DFGEL--PLEEILRKAAELGFDGVELSPGDLFPADYKELAELKELLADYGLEITSLAPFSNN-L-LSPDEE 77 (274)
T ss_pred cccceecc-cCCCC--CHHHHHHHHHHhCCCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEeecccCCC-c-CCCchh
Confidence 55555442 22344 9999999999999999999962 22 112899999999999999998765321 2 345666
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcc
Q psy13372 82 KESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYY 161 (273)
Q Consensus 82 ~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~ 161 (273)
.++..++.+++.+++|+++|++.+++++|....... +..+...++.+.+.+++++++|+++|+.+.+||+. |++++
T Consensus 78 ~~~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~-~~~~~~~~~~~~~~l~~l~~~a~~~~i~l~~e~~~---~~~~~ 153 (274)
T COG1082 78 EREEALEELKRAIELAKELGAKVVVVHPGLGAGADD-PDSPEEARERWAEALEELAEIAEELGIGLALENHH---HPGNV 153 (274)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCC-CCCCcccHHHHHHHHHHHHHHHHHhCCceEEeecC---Cccce
Confidence 778899999999999999999999999886643311 00145667899999999999999999999999943 26778
Q ss_pred cCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhcCCcceeEEeccCCC-----------CCCCCCCCcc
Q psy13372 162 LSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAPD-----------RQEPHARGEI 230 (273)
Q Consensus 162 ~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~~vHi~d~~~-----------~~~~g~~G~i 230 (273)
+++..+.++++ ..++++++|+++|++|+...+.|+.+.+.++.++|.|+|+||+.+ +..||. |.+
T Consensus 154 ~~~~~~~~~~~---~~~~~~~v~~~lD~~H~~~~~~d~~~~~~~~~~rI~hvH~kD~~~~~~~~~~~~~~~~~pG~-G~i 229 (274)
T COG1082 154 VETGADALDLL---REVDSPNVGLLLDTGHAFFAGEDPLEAIRKLGDRIGHVHLKDADGPTLDIVNFLGQHLPPGD-GDI 229 (274)
T ss_pred eecCHHHHHHH---HhcCCCceEEEEecCchhhccCCHHHHHHHhhcceeEEEEeecCcchhcccCCCcceeCCCC-CCc
Confidence 89998889999 999989999999999999988899999999999999999999863 458999 999
Q ss_pred cHHHHHHHHHHcCCCceEEEeeec---CC-ChHHHHHHHHHhh
Q psy13372 231 DYAYVFELLAREGYEGYVGLEYKP---QG-NTKEGLEEFLKTF 269 (273)
Q Consensus 231 d~~~i~~~L~~~gy~g~~~lE~~~---~~-~~~~~~~~~~~~~ 269 (273)
||..+++.|++.||+|++++|.+. .+ ...++++ +++++
T Consensus 230 d~~~i~~~L~~~gy~g~~~iE~~~~~~~~~~~~~~~~-~l~~~ 271 (274)
T COG1082 230 DFKAIFSALREAGYDGWLVVEVFAPNDAEEYAREALE-FLREL 271 (274)
T ss_pred CHHHHHHHHHHcCCCceEEEEecCCCcHHHHHHHHHH-HHHHH
Confidence 999999999999999999999776 32 4667777 87765
No 15
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=100.00 E-value=6.9e-31 Score=225.72 Aligned_cols=232 Identities=16% Similarity=0.163 Sum_probs=191.6
Q ss_pred CHHHHHHHHHHcCCCeEEecCCC--C-------CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPP--V-------GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEK 92 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~--~-------~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (273)
++.+.++.++++||++||++... . ....+++++.++++||.+++++.+. .+. .+++++.|+.+++.+++
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~h~p~~-~nl-~s~d~~~r~~~~~~l~~ 88 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSVHAPYL-INL-ASPDKEKVEKSIERLID 88 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCce-ecC-CCCCHHHHHHHHHHHHH
Confidence 78899999999999999999531 1 1237899999999999987765432 233 33578899999999999
Q ss_pred HHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHH
Q psy13372 93 TIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLI 172 (273)
Q Consensus 93 ~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li 172 (273)
+++.|+.||++.|++|+|..... ..++.++++++.|+++++. ++||++++||++.. ...+..+++++.+++
T Consensus 89 ~i~~A~~lGa~~vv~h~g~~~~~-----~~e~~~~~~~~~l~~l~~~--~~gv~l~lEn~~~~--~~~~~~~~~~~~~ll 159 (273)
T smart00518 89 EIKRCEELGIKALVFHPGSYLKQ-----SKEEALNRIIESLNEVIDE--TKGVVILLETTAGK--GSQIGSTFEDLKEII 159 (273)
T ss_pred HHHHHHHcCCCEEEEccccccCC-----CHHHHHHHHHHHHHHHHhc--cCCcEEEEeccCCC--CCccCCCHHHHHHHH
Confidence 99999999999999999865221 1578899999999999993 78999999998754 456778999999999
Q ss_pred HHHhhcCC-CceeEeeecccccccCCC------hHHHHHhc----C-CcceeEEeccCCC-------CC-CCCCCCcccH
Q psy13372 173 RELRAHGI-SNVQLQFDFFNAQRICGD------LTHTFGAC----R-DLIGHVQIAQAPD-------RQ-EPHARGEIDY 232 (273)
Q Consensus 173 ~~~~~~~~-~~~g~~~D~~h~~~~~~~------~~~~i~~~----~-~~i~~vHi~d~~~-------~~-~~g~~G~id~ 232 (273)
+.+++ |++|+|+|++|+...+.+ +.++++.+ + ++|.|+|++|+.+ ++ ++|+ |.+||
T Consensus 160 ---~~v~~~~~~g~~lD~gH~~~~g~d~~~~~~~~~~i~~~~~~~g~~~I~~vHl~D~~~~~g~~~d~H~~~G~-G~id~ 235 (273)
T smart00518 160 ---DLIKELDRIGVCIDTCHIFAAGYDINTVEGFEKVLEEFENVLGLEYLKAIHLNDSKIELGSGKDRHENLGE-GYIGF 235 (273)
T ss_pred ---HhcCCCCCeEEEEEccchhhccCCCCCHHHHHHHHHHHHHHhCHHhhceEEeecCCCccCCCCccccCCCC-CCCCh
Confidence 99998 899999999999888765 45565543 4 7999999999742 23 5799 99999
Q ss_pred HHHHHHHHHcCCC-ceEEEeeec-CCChHHHHHHHHHhh
Q psy13372 233 AYVFELLAREGYE-GYVGLEYKP-QGNTKEGLEEFLKTF 269 (273)
Q Consensus 233 ~~i~~~L~~~gy~-g~~~lE~~~-~~~~~~~~~~~~~~~ 269 (273)
+.++..|+..+|+ +++++|..+ .++..+.++ +||++
T Consensus 236 ~~~~~~l~~~~~~~~~~~lE~~~~~~~~~~~~~-~~~~~ 273 (273)
T smart00518 236 EPFRLLMADKRFDGIPLILETPPGPEMYEKEIA-LLKEI 273 (273)
T ss_pred HHHHHHhhChhhcCCcEEEeCCCCCcchHHHHH-HHhcC
Confidence 9999999999999 699999887 556889999 99874
No 16
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=6.9e-28 Score=206.81 Aligned_cols=229 Identities=17% Similarity=0.158 Sum_probs=180.6
Q ss_pred ccccccccccccccccCHHHHHHHHHHcCCCeEEecCC--C--C-----CCCHHHHHHHHHHcCCee--EEEecCCcccc
Q psy13372 6 FKLAANLTLLFNDLAANYLDKYRVAAELGFRYIESWFP--P--V-----GVTLEQLVAAQTRHGLKQ--VLINTEVDENF 74 (273)
Q Consensus 6 ~k~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~--~--~-----~~~~~~~~~~l~~~gL~i--~~~~~~~~~~~ 74 (273)
|++|..++.. .++.++++.++++||++||++.. . . ....+.+++.++++++.+ .+++.++..+.
T Consensus 1 ~~~g~h~s~~-----g~~~~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~iNl 75 (274)
T TIGR00587 1 KLLGAHVSAA-----GGLQAAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYLINL 75 (274)
T ss_pred CceEEEEecc-----CCHHHHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCeeeec
Confidence 4677766322 37899999999999999999852 1 1 123678889999998874 33444432344
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 75 GYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
.+++++.|+.+++.+++.++.|+.+|++.|++|+|..... . .+..++++.++|+++++. ..||++++||++.
T Consensus 76 -as~~~~~r~~sv~~~~~~i~~A~~lga~~vv~H~G~~~~~-~----~e~~~~~~~~~l~~l~~~--~~~v~l~lEN~~~ 147 (274)
T TIGR00587 76 -ASPDEEKEEKSLDVLDEELKRCELLGIMLYNFHPGSALKC-S----EEEGLDNLIESLNVVIKE--TKIVTILLENMAG 147 (274)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCC-C----HHHHHHHHHHHHHHHHhc--cCCCEEEEEeCCC
Confidence 3468899999999999999999999999999999986432 1 577899999999999874 4579999999876
Q ss_pred CCCCCcccCCHHHHHHHHHHHhhcCC-CceeEeeecccccccCCCh------HHHHHhcC-----CcceeEEeccCC---
Q psy13372 155 HSVPGYYLSSFRVAERLIRELRAHGI-SNVQLQFDFFNAQRICGDL------THTFGACR-----DLIGHVQIAQAP--- 219 (273)
Q Consensus 155 ~~~~~~~~~~~~~~~~li~~~~~~~~-~~~g~~~D~~h~~~~~~~~------~~~i~~~~-----~~i~~vHi~d~~--- 219 (273)
. ...+..+++++.+++ +.+++ |++|+|+|++|+...+.++ ..+++.+. ++|.++|++|+.
T Consensus 148 ~--~~~l~~~~~el~~ll---~~~~~~~~lg~~lDt~H~~~~g~~~~~~~~~~~~~~~~~~~~g~~~i~~vHl~Ds~~~~ 222 (274)
T TIGR00587 148 Q--GSELGRSFEELAYII---KVIVDKRRIGVCLDTCHFFAAGYDITTKAYFEVVKNEFDVVVGFKYLKAIHLNDSKNVL 222 (274)
T ss_pred C--CCccCCCHHHHHHHH---HhcCCCCceEEEEEhhhHHhcCCCcCCHHHHHHHHHHHHHhcCHhheeEEEEEcCcccc
Confidence 4 456788999999999 99985 8999999999998877653 34444432 799999999973
Q ss_pred ----CCC-CCCCCCcccHHHHHHHHHHcCCCc-eEEEeee
Q psy13372 220 ----DRQ-EPHARGEIDYAYVFELLAREGYEG-YVGLEYK 253 (273)
Q Consensus 220 ----~~~-~~g~~G~id~~~i~~~L~~~gy~g-~~~lE~~ 253 (273)
+++ .+|+ |.+||+.+++.|++.++.+ ++.+|..
T Consensus 223 g~~~d~H~~iG~-G~i~~~~~~~~L~~~~~~~~~~i~Etp 261 (274)
T TIGR00587 223 GSRKDRHENIGE-GIIGFDAFRLIMDDERFKGIPIILETP 261 (274)
T ss_pred ccCcCCCCCcCC-ccCCHHHHHHHHcCccccCCcEEEeCc
Confidence 234 5689 9999999999999999999 6777754
No 17
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=9.6e-28 Score=191.52 Aligned_cols=233 Identities=20% Similarity=0.214 Sum_probs=195.5
Q ss_pred cccccccccccccccCHHHHHHHHHHcCCCeEEecCCCC-------CCC---HHHHHHHHHHcCCeeEEEecCCc--ccc
Q psy13372 7 KLAANLTLLFNDLAANYLDKYRVAAELGFRYIESWFPPV-------GVT---LEQLVAAQTRHGLKQVLINTEVD--ENF 74 (273)
Q Consensus 7 k~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~-------~~~---~~~~~~~l~~~gL~i~~~~~~~~--~~~ 74 (273)
++|+.-..+-.+. ++.|.+..++++|||.||++.... +++ .-++.+++.++|+.+.+++.... +.+
T Consensus 6 ~lGIYEKAlp~~~--sW~erl~~AK~~GFDFvEmSvDEsDeRLaRLDWs~~er~~l~~ai~etgv~ipSmClSaHRRfPf 83 (287)
T COG3623 6 PLGIYEKALPNGF--SWLERLALAKELGFDFVEMSVDESDERLARLDWSKEERLALVNAIQETGVRIPSMCLSAHRRFPF 83 (287)
T ss_pred ccceehhhccCCC--CHHHHHHHHHHcCCCeEEEeccchHHHHHhcCCCHHHHHHHHHHHHHhCCCccchhhhhhccCCC
Confidence 6787776666677 999999999999999999997521 122 45778889999999999887544 334
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 75 GYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
|. .|+..|+++++..+++|++|..||++.|.+-...+=.+. ..++..+++++.++..+++|.+++|++++|.|.
T Consensus 84 GS-~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~----~d~eT~~rFi~g~~~a~~lA~~aqV~lAvEiMD- 157 (287)
T COG3623 84 GS-KDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEE----ADEETRQRFIEGLKWAVELAARAQVMLAVEIMD- 157 (287)
T ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeecc----CCHHHHHHHHHHHHHHHHHHHhhccEEEeeecc-
Confidence 43 588999999999999999999999999999533222221 167789999999999999999999999999985
Q ss_pred CCCCCcccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhcCCcceeEEeccC-------CC--C-CCC
Q psy13372 155 HSVPGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQA-------PD--R-QEP 224 (273)
Q Consensus 155 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~~vHi~d~-------~~--~-~~~ 224 (273)
.-|++|......+. +.+++|++-+.+|+||...=+-++...+..-.++|..+|+||+ || | .+.
T Consensus 158 ----tpfm~sIsk~~~~~---~~I~sP~f~vYPDiGNlsaw~ndv~~El~lG~~~I~aiHlKDTy~vte~~~GqFrdvpf 230 (287)
T COG3623 158 ----TPFMNSISKWLKYD---KYINSPWFTVYPDIGNLSAWNNDVQSELQLGIDKIVAIHLKDTYAVTETSPGQFRDVPF 230 (287)
T ss_pred ----cHHHHHHHHHHHHH---HHhCCCcEEecCCcccHhhhhhhHHHHHHcCcCceEEEEecccccccccCCCccccCCc
Confidence 44899999999999 9999999999999999865567888888888899999999997 23 2 256
Q ss_pred CCCCcccHHHHHHHHHHcCCCceEEEeeecC
Q psy13372 225 HARGEIDYAYVFELLAREGYEGYVGLEYKPQ 255 (273)
Q Consensus 225 g~~G~id~~~i~~~L~~~gy~g~~~lE~~~~ 255 (273)
|+ |.+||...++.|++.+|.|++.+|.++.
T Consensus 231 Ge-G~Vdf~~~f~~lk~~ny~gpfLIEMWse 260 (287)
T COG3623 231 GE-GCVDFEECFKTLKQLNYRGPFLIEMWSE 260 (287)
T ss_pred CC-cchhHHHHHHHHHHhCCCCceehhhhhh
Confidence 88 9999999999999999999999998754
No 18
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=99.95 E-value=8.6e-28 Score=198.26 Aligned_cols=193 Identities=23% Similarity=0.149 Sum_probs=155.4
Q ss_pred HHHHHHcCCCeEEecCCC--CC----CCHHHHHHHHHHcCCeeEEEecCCccccC----CCCCchhHHHHHHHHHHHHHH
Q psy13372 27 YRVAAELGFRYIESWFPP--VG----VTLEQLVAAQTRHGLKQVLINTEVDENFG----YAAVKGKESEFRASLEKTIQY 96 (273)
Q Consensus 27 l~~~~~~G~~~vEl~~~~--~~----~~~~~~~~~l~~~gL~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~ 96 (273)
++.++++||++||++... .. ...+++++.++++||++.+++.+...... .+..++ |+.+++.+++.+++
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~ 79 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDL 79 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHH
Confidence 578999999999999752 11 24789999999999999988764331111 123445 99999999999999
Q ss_pred HHHcCCCeEEecCCC--CCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHH
Q psy13372 97 ACALNIPAIHIMSGK--TESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRE 174 (273)
Q Consensus 97 a~~lG~~~i~~~~G~--~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~ 174 (273)
|+.+|++.+++++|. ..... ..+..++++++.|++++++|+++||++++||++.. ......+.+++.+++
T Consensus 80 a~~lg~~~i~~~~g~~~~~~~~----~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~--~~~~~~~~~~~~~~l-- 151 (213)
T PF01261_consen 80 AKRLGAKYIVVHSGRYPSGPED----DTEENWERLAENLRELAEIAEEYGVRIALENHPGP--FSETPFSVEEIYRLL-- 151 (213)
T ss_dssp HHHHTBSEEEEECTTESSSTTS----SHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSS--SSSEESSHHHHHHHH--
T ss_pred HHHhCCCceeecCcccccccCC----CHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCc--cccchhhHHHHHHHH--
Confidence 999999999999983 22221 26789999999999999999999999999998653 222333459999999
Q ss_pred HhhcCCCceeEeeecccccccCCChHHHHHhcCCcceeEEeccCCC--------CCCCCCCCcc
Q psy13372 175 LRAHGISNVQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAPD--------RQEPHARGEI 230 (273)
Q Consensus 175 ~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~~vHi~d~~~--------~~~~g~~G~i 230 (273)
+.+++|++|+|+|++|+...+.++.++++.++++|.++|++|... ..++|+ |+|
T Consensus 152 -~~~~~~~~~i~~D~~h~~~~~~~~~~~i~~~~~~i~~vHi~D~~~~~~~~~~~~~~~G~-G~i 213 (213)
T PF01261_consen 152 -EEVDSPNVGICFDTGHLIMAGEDPDEAIKRLAPRIKHVHIKDANGDLDWGRDDHLPIGQ-GDI 213 (213)
T ss_dssp -HHHTTTTEEEEEEHHHHHHTTHHHHHHHHHHHHGEEEEEE-EESSTTTSSSTTEBSTTS-SSC
T ss_pred -hhcCCCcceEEEehHHHHHcCCCHHHHHHHhhcceeEEEEeCCCCcccCCCCccCCCCC-CCC
Confidence 999999999999999999988999999999999999999999754 236888 875
No 19
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=99.94 E-value=7.9e-25 Score=193.69 Aligned_cols=245 Identities=13% Similarity=0.098 Sum_probs=189.0
Q ss_pred ccccccccccccccccCHHHHHHHHHHcCCCeEEecC--C--C-----CCCCHHHHHHHHHHcCCee--EEEecCCcccc
Q psy13372 6 FKLAANLTLLFNDLAANYLDKYRVAAELGFRYIESWF--P--P-----VGVTLEQLVAAQTRHGLKQ--VLINTEVDENF 74 (273)
Q Consensus 6 ~k~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~--~--~-----~~~~~~~~~~~l~~~gL~i--~~~~~~~~~~~ 74 (273)
|+||...|.. ..+..+++.+.+.|++++++.. | + ....++++++.++++|+.+ ...+.++..+.
T Consensus 131 ~~iGaHvSia-----GG~~~a~~~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINL 205 (413)
T PTZ00372 131 VYIGAHVSAS-----GGVDNSPINAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINL 205 (413)
T ss_pred ceEEEEEecc-----ccHHHHHHHHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecC
Confidence 5778777532 2678899999999999999984 2 1 1245689999999999864 33344433344
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 75 GYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
+ +++++.|+.+++.+++.|+.|+.||++.|++|+|....... .++.++++++.|.++. ++..||+|+|||++.
T Consensus 206 A-Spd~e~rekSv~~~~~eL~rA~~LGa~~VV~HPGs~~~~~~----~ee~i~~i~e~L~~~l--a~~~gV~IlLENmag 278 (413)
T PTZ00372 206 A-NPDKEKREKSYDAFLDDLQRCEQLGIKLYNFHPGSTVGQCS----KEEGIKNIADCINKAH--EETKSVIIVLENTAG 278 (413)
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCCCCCC----HHHHHHHHHHHHHHHH--hCcCCCEEEEecCCC
Confidence 2 36789999999999999999999999999999998533211 4778999999999974 567889999999986
Q ss_pred CCCCCcccCCHHHHHHHHHHHhhcCC-CceeEeeecccccccCCC------hHHHHHhc----C-CcceeEEeccCC---
Q psy13372 155 HSVPGYYLSSFRVAERLIRELRAHGI-SNVQLQFDFFNAQRICGD------LTHTFGAC----R-DLIGHVQIAQAP--- 219 (273)
Q Consensus 155 ~~~~~~~~~~~~~~~~li~~~~~~~~-~~~g~~~D~~h~~~~~~~------~~~~i~~~----~-~~i~~vHi~d~~--- 219 (273)
. .+.+..+++++.+++ +.+++ +++|+|+|++|+..+|.| +..+++.+ + ++|.++|+.|+.
T Consensus 279 ~--g~~lG~~~eeL~~Ii---d~v~~~~rlGvCLDTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~~vHLNDSk~~~ 353 (413)
T PTZ00372 279 Q--KNSVGSKFEDLRDII---ALVEDKSRVGVCLDTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLKAVHLNDSKSDL 353 (413)
T ss_pred C--CCcccCCHHHHHHHH---HhcCCcCCeEEEEEHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhheeEEEEEcCCCcc
Confidence 4 456788999999999 99974 789999999999887754 33455443 3 799999999963
Q ss_pred ----CCC-CCCCCCcccHHHHHHHHHHcCCC-ceEEEeeecC---CC-hHHHHHHHHHhh
Q psy13372 220 ----DRQ-EPHARGEIDYAYVFELLAREGYE-GYVGLEYKPQ---GN-TKEGLEEFLKTF 269 (273)
Q Consensus 220 ----~~~-~~g~~G~id~~~i~~~L~~~gy~-g~~~lE~~~~---~~-~~~~~~~~~~~~ 269 (273)
+|| .+|. |.|++..+...+....+. .++++|.... .. ..+.++ +|++.
T Consensus 354 GS~~DRH~~IG~-G~Ig~~~f~~l~~~~~~~~iP~ILETP~~~~~~~~~~~ei~-~lr~l 411 (413)
T PTZ00372 354 GSGLDRHENIGK-GKLGMETFKFIMNSKYFKNIPIILETPDVNNDEGVYKQEIK-LLYSL 411 (413)
T ss_pred CCCcccccCcCC-CCcChHHHHHHHhChhhCCCeEEEeCCCCCCCchHHHHHHH-HHHhh
Confidence 345 5799 999999999999877665 5899996431 12 445688 88764
No 20
>PRK03906 mannonate dehydratase; Provisional
Probab=99.90 E-value=4.1e-23 Score=182.44 Aligned_cols=173 Identities=15% Similarity=0.043 Sum_probs=143.3
Q ss_pred CCchhHHHHHHHHHHHHHH-HHHcCCCeEEecCCCCCCCC----------CCCCCCcchHHHHHHHHHHHHHHHhhCCcE
Q psy13372 78 AVKGKESEFRASLEKTIQY-ACALNIPAIHIMSGKTESSR----------TQPIASEDPYTTLKENLIYACAELERHSLT 146 (273)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~-a~~lG~~~i~~~~G~~~~~~----------~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~ 146 (273)
.+++.++++.+++++.++. +..|++..+...||.-.... ....+.++.|+++++.|++++++|+++||+
T Consensus 150 ~~~~~~~~a~~~f~~~~~~~~~~L~~~~i~~lpG~~~~~~~~~~~~~~~~y~~i~~e~lw~~l~~fL~~v~p~Aee~GV~ 229 (385)
T PRK03906 150 YGEEEIAQAAARFAAMSEEDKARLTRNIIAGLPGWEEPYTLEQFRALLELYKDIDEEKLRENLAYFLKAIIPVAEEVGVK 229 (385)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHhhccEEEeCCCCCccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 3577899999999999999 78899999998888331100 012347899999999999999999999999
Q ss_pred EEEccCCCCCC---CCcccCCHHHHHHHHHHHhhcCCCceeEeeeccccccc-CCChHHHHHhcCCcceeEEeccCCC--
Q psy13372 147 ALIEPVNQHSV---PGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRI-CGDLTHTFGACRDLIGHVQIAQAPD-- 220 (273)
Q Consensus 147 i~lE~~~~~~~---~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~-~~~~~~~i~~~~~~i~~vHi~d~~~-- 220 (273)
+++||+.+... -..+++|.+++.+++ +.+++|++|+|||+||+... +.|+.+.|+.+++||.|||++|...
T Consensus 230 LaihPdDPp~~~~Gl~riv~t~~d~~rll---~~v~Sp~~gl~lDtG~l~~~~e~D~~~~I~~~g~RI~hvHlrdv~~~~ 306 (385)
T PRK03906 230 MAIHPDDPPRPIFGLPRIVSTEEDLQRLL---DAVDSPANGLTLCTGSLGARPDNDLPAMIREFGDRIHFAHLRNVKREG 306 (385)
T ss_pred EEEeeCCccccccccCceeCCHHHHHHHH---HhcCCCceeEEEchhhhhhcCCCCHHHHHHHhhhhEEEEeeccCccCC
Confidence 99999865311 125789999999999 99999999999999999654 4599999999999999999999741
Q ss_pred CC-----CCCCCCcccHHHHHHHHHHcCCCceEEEeeec
Q psy13372 221 RQ-----EPHARGEIDYAYVFELLAREGYEGYVGLEYKP 254 (273)
Q Consensus 221 ~~-----~~g~~G~id~~~i~~~L~~~gy~g~~~lE~~~ 254 (273)
.. .... |.+|+..++++|++.||+||+.-.+.+
T Consensus 307 ~~~F~E~~hl~-G~vD~~~vl~aL~~~gy~G~irpDHg~ 344 (385)
T PRK03906 307 PGSFHEAAHLS-GDVDMYAVVKALLDEEFRIPMRPDHGR 344 (385)
T ss_pred CCCcccccCCC-CCCCHHHHHHHHHHcCCCcceeCCCCC
Confidence 11 2346 999999999999999999999888754
No 21
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=4.1e-21 Score=151.80 Aligned_cols=239 Identities=22% Similarity=0.194 Sum_probs=186.3
Q ss_pred CcccccccccccccccccCHHHHHHHHHHcCCCeEEecCCC------CCCCHHHHHHHHHHcCCeeEEEecCCccccCCC
Q psy13372 4 PSFKLAANLTLLFNDLAANYLDKYRVAAELGFRYIESWFPP------VGVTLEQLVAAQTRHGLKQVLINTEVDENFGYA 77 (273)
Q Consensus 4 ~~~k~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~------~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~ 77 (273)
..++|++|- +..+.+ +++..++.++++|+.-|||.... +..+..+++++.+++|++|.+++.-+.++. +
T Consensus 3 ~~~rFain~-~~aP~l--~v~affa~ak~lg~s~VeiRndl~~~~I~dg~p~a~vka~Aek~Gl~IvSINAlypFn~-w- 77 (272)
T COG4130 3 AKPRFAINR-IAAPGL--SVEAFFALAKRLGLSKVEIRNDLPSNAIADGTPAAEVKALAEKAGLTIVSINALYPFNE-W- 77 (272)
T ss_pred ccchhhhhh-ccCCCC--CHHHHHHHHHHcCcceeEEecCCCcccccCCCCHHHHHHHHHHcCcEEEEeeccccccc-c-
Confidence 457999998 777888 99999999999999999999642 246789999999999999999987433222 1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCC
Q psy13372 78 AVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSV 157 (273)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~ 157 (273)
+++ .....+..++.|..+|++.++++|=+.+.... +....+.++..|+.+.++..++||+=.+||++.
T Consensus 78 -t~~----~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~----~~vr~~~lv~AlkaLkpil~~~gi~GLVEPLGF--- 145 (272)
T COG4130 78 -TEE----RVAEARGLADYAAACGAKALVLCPLNDGSWPG----TAVRREDLVEALKALKPILDEYGITGLVEPLGF--- 145 (272)
T ss_pred -ChH----HHHHHHHHHHHHHhcCCceEEEEeccCCCCCC----cccchHHHHHHHHHhhHHHHHhCccccccccCc---
Confidence 122 24567889999999999999998744422211 556678999999999999999999999999875
Q ss_pred CCcccCCHHHHHHHHHHHhhcCCCc-eeEeeecccccccCCChHHHHHhcCCcceeEEeccCC------------CCCCC
Q psy13372 158 PGYYLSSFRVAERLIRELRAHGISN-VQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAP------------DRQEP 224 (273)
Q Consensus 158 ~~~~~~~~~~~~~li~~~~~~~~~~-~g~~~D~~h~~~~~~~~~~~i~~~~~~i~~vHi~d~~------------~~~~~ 224 (273)
.-+-+.+..++.+.| ++.+.+. +++..||+|.+..|++.. ..+..+.||++... +|...
T Consensus 146 ~~csLRsk~eA~~aI---~aa~g~~~fklvhDTFHHhLagE~~f-----fpdlTGLVHiSgV~d~~~~~~dm~d~hRVlv 217 (272)
T COG4130 146 RVCSLRSKAEAAEAI---RAAGGERVFKLVHDTFHHHLAGETEF-----FPDLTGLVHISGVEDPRLDVEDMRDPHRVLV 217 (272)
T ss_pred hhhhhhhHHHHHHHH---HHhCCCceeeeehhhhhhhhccccee-----cccccceeEecccCCCcccHhhhcCcceEEe
Confidence 456688999999999 9998765 999999999999887632 23667999999752 23345
Q ss_pred CCCCcccHHHHHHHHHHcCCCceEEEeeecC-----CC----hHHHHHHHHHh
Q psy13372 225 HARGEIDYAYVFELLAREGYEGYVGLEYKPQ-----GN----TKEGLEEFLKT 268 (273)
Q Consensus 225 g~~G~id~~~i~~~L~~~gy~g~~~lE~~~~-----~~----~~~~~~~~~~~ 268 (273)
|....++--.-++.|.+.||.|++++|.+.. .+ ..+++. |++.
T Consensus 218 ~~~Drl~N~~Qir~L~d~GY~Gp~sFePFa~~vhel~~~a~~l~esi~-~~~~ 269 (272)
T COG4130 218 GEKDRLDNIAQIRRLEDMGYRGPYSFEPFASEVHELSDPAAALAESID-YIRH 269 (272)
T ss_pred cCccccccHHHHHHHHhcCcCCccccCcchhhhccccChHHHHHHHHH-HHHH
Confidence 5546677777889999999999999997732 22 446666 6654
No 22
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=99.86 E-value=7.1e-20 Score=154.04 Aligned_cols=244 Identities=15% Similarity=0.147 Sum_probs=179.4
Q ss_pred cccccccccccccccccCHHHHHHHHHHcCCCeEEecCCC-----C-CC---CHHHHHHHHHHcCCeeEEEecCCccccC
Q psy13372 5 SFKLAANLTLLFNDLAANYLDKYRVAAELGFRYIESWFPP-----V-GV---TLEQLVAAQTRHGLKQVLINTEVDENFG 75 (273)
Q Consensus 5 ~~k~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~-----~-~~---~~~~~~~~l~~~gL~i~~~~~~~~~~~~ 75 (273)
|++||...+..... ++...++.++++|.+++|+.+-. . +. ..+..+..++ ....++.+..+. -+.+
T Consensus 1 ~~~~G~h~s~~~~~---~~~~~~~~a~~iG~na~~if~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~vHApYl-INl~ 75 (280)
T COG0648 1 MILFGAHGSPAGGK---SLVNAVERAREIGLNAFEIFLVNPRVWISPPLAEDAIELFKAALK-DDVQLSVHAPYL-INLA 75 (280)
T ss_pred CceEeeeecCCCch---hHHHHHHHHHHcCCCEEEEEecCcccccCCCchHHHHHHHHHhhc-cCceEEeeccee-ecCC
Confidence 56788766444333 68999999999999999998521 1 11 1333444444 334444444432 2442
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCC
Q psy13372 76 YAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQH 155 (273)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~ 155 (273)
+++++.++.+++.+...++.|..||+..+++|||..... + .++.++++++.|.++.+. .+|.+++||+.+.
T Consensus 76 -s~~~e~~ekS~~~l~~e~~r~~~lG~~~lv~HpG~~~~~-~----~e~~l~~i~~~Ln~~~~~---~~v~i~~e~~age 146 (280)
T COG0648 76 -SPEKEKVEKSIERLIDEIDRCEQLGAKLLVFHPGSYLGQ-G----KEEGLNRIAEALNELLEE---EGVIILLENTAGE 146 (280)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHcCCcEEEECCccccCC-C----HHHHHHHHHHHHHHHhhc---cCCeEEEEEeccc
Confidence 356788999999999999999999999999999986443 1 678889999998888876 3499999999875
Q ss_pred CCCCcccCCHHHHHHHHHHHhhcCCCc-eeEeeecccccccCCChH------HHHHh---c-C-CcceeEEeccCC----
Q psy13372 156 SVPGYYLSSFRVAERLIRELRAHGISN-VQLQFDFFNAQRICGDLT------HTFGA---C-R-DLIGHVQIAQAP---- 219 (273)
Q Consensus 156 ~~~~~~~~~~~~~~~li~~~~~~~~~~-~g~~~D~~h~~~~~~~~~------~~i~~---~-~-~~i~~vHi~d~~---- 219 (273)
......+.++..+++ +.+.... +|+|+||+|++.+|.++. ..++. . + +++.++|+.|..
T Consensus 147 --gs~~g~~F~~L~eii---~~~~~~~~igvCiDtcH~~Aagy~~~~~~~~~~vl~~~d~~~G~~~~~~~Hlndsk~~~G 221 (280)
T COG0648 147 --GSGKGTQFGELAEII---DLIEEKERIGVCIDTCHAFAAGYDIITEEDFEKVLNEFDKVLGLEYLKHIHLNDSKYPLG 221 (280)
T ss_pred --cCccccchhhHHHHH---HhhcccCceEEEEEchhhhhccCCcCcHHHHHHHHHHHHHHhChhhheeEeecCcccccc
Confidence 455677788888888 7776554 999999999988776533 33333 2 3 389999999952
Q ss_pred ---CCC-CCCCCCcccHHHHHHHHHHcCCCce-EEEeeecCCChHHHHHHHHHhh
Q psy13372 220 ---DRQ-EPHARGEIDYAYVFELLAREGYEGY-VGLEYKPQGNTKEGLEEFLKTF 269 (273)
Q Consensus 220 ---~~~-~~g~~G~id~~~i~~~L~~~gy~g~-~~lE~~~~~~~~~~~~~~~~~~ 269 (273)
+|| ..|. |.++++.+...+++..+++. +.+|-...+...+.++ +++..
T Consensus 222 ~~kDRH~~ig~-G~ig~e~l~~~~~d~~~~~iPiIlETP~~e~~a~ei~-~l~~~ 274 (280)
T COG0648 222 SNKDRHENIGE-GYIGFEALRKILKDFRIDGIPIILETPNLEGDAEEIK-KLRER 274 (280)
T ss_pred cccccccccCC-CCCChHHHHHHHhcccccCCeEEEeCCCccccHHHHH-HHHHH
Confidence 455 4688 99999999999999999997 9999654455666677 77753
No 23
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=99.84 E-value=1.4e-18 Score=153.21 Aligned_cols=224 Identities=16% Similarity=0.105 Sum_probs=164.3
Q ss_pred cCHHHHHHHHHHc-----CCCeEEecCCCC-CCCHHHHHHHHHHcCCeeEEEecCCc----ccc-C-CCCCchhHHHHHH
Q psy13372 21 ANYLDKYRVAAEL-----GFRYIESWFPPV-GVTLEQLVAAQTRHGLKQVLINTEVD----ENF-G-YAAVKGKESEFRA 88 (273)
Q Consensus 21 ~~~~~~l~~~~~~-----G~~~vEl~~~~~-~~~~~~~~~~l~~~gL~i~~~~~~~~----~~~-~-~~~~~~~~~~~~~ 88 (273)
.++.|.++.++.. +-..|+++.+++ ..+.+++++.++++||.+.++++... +.. + .+++++.|+.+++
T Consensus 37 r~~~e~~~d~~~v~~L~~~~~~v~lH~~~d~~~d~~~~~~~l~~~GL~v~~i~p~~f~~~~~~~GSLt~pD~~vR~~AIe 116 (378)
T TIGR02635 37 RNVFEKIEDAALVHRLTGICPTVALHIPWDRVEDYEELARYAEELGLKIGAINPNLFQDDDYKFGSLTHPDKRIRRKAID 116 (378)
T ss_pred CCHHHHHHHHHHHHhhcCCCCceeeccCCccccCHHHHHHHHHHcCCceeeeeCCccCCcccCCCCCCCCCHHHHHHHHH
Confidence 4677777765443 235678887765 36789999999999999998876211 111 2 3468999999999
Q ss_pred HHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCc--c-cCCH
Q psy13372 89 SLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGY--Y-LSSF 165 (273)
Q Consensus 89 ~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~--~-~~~~ 165 (273)
.+++++++|+++|++.|+++.+ .+...+...+....|++++++|+++++.+. .|++++||+-+.. |.. . +++.
T Consensus 117 ~~k~~idiA~eLGa~~I~iW~~-DG~~~~g~~~~~~a~~rl~esL~eI~~~~~-~~v~~~iE~Kp~E--p~~y~t~~~~~ 192 (378)
T TIGR02635 117 HLLECVDIAKKTGSKDISLWLA-DGTNYPGQDDFRSRKDRLEESLAEVYEHLG-ADMRLLIEYKFFE--PAFYHTDIPDW 192 (378)
T ss_pred HHHHHHHHHHHhCCCeEEEecC-CcCcCCcccCHHHHHHHHHHHHHHHHHhCc-CCCEEEEecCCCC--CceeeecCCcH
Confidence 9999999999999999988854 222211011245579999999999996654 5999999984332 322 1 4677
Q ss_pred HHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhc--CCcceeEEeccCCC-CCCCCCCCcccHHHHHHH---H
Q psy13372 166 RVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGAC--RDLIGHVQIAQAPD-RQEPHARGEIDYAYVFEL---L 239 (273)
Q Consensus 166 ~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~--~~~i~~vHi~d~~~-~~~~g~~G~id~~~i~~~---L 239 (273)
..+..++ +.++.+ +++++|+||+. .++++.+.+..+ .+++.|+|++|... -..++. |.+|+..++.. |
T Consensus 193 ~~~l~l~---~~lg~~-~~v~lD~GH~~-~~Enia~~~a~l~~~~kL~hiH~nd~~~~Ddd~~v-G~~d~~e~~~il~el 266 (378)
T TIGR02635 193 GTAYALS---EKLGER-ALVLVDTGHHA-QGTNIEFIVATLLDEKKLGGFHFNSRKYADDDLTV-GAINPYELFLIFKEI 266 (378)
T ss_pred HHHHHHH---HhhCCC-ceEEeecCccC-CCCCHHHHHHHHhhCCceeEEEecCCCcccCCCce-ecCCHHHHHHHHHHH
Confidence 8889999 888855 69999999985 689999955555 49999999987321 124667 99997777664 5
Q ss_pred HHcCCCc-------eEEEeeec
Q psy13372 240 AREGYEG-------YVGLEYKP 254 (273)
Q Consensus 240 ~~~gy~g-------~~~lE~~~ 254 (273)
.+.||.| .+.+..++
T Consensus 267 ~~~~~~~~~~~~~~~~~lD~f~ 288 (378)
T TIGR02635 267 VRAGRDPEDSASDVALMLDQCH 288 (378)
T ss_pred HhcCCCCcccccceEEEEecCc
Confidence 6678988 67788775
No 24
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=99.78 E-value=6.2e-17 Score=141.19 Aligned_cols=228 Identities=14% Similarity=0.152 Sum_probs=174.5
Q ss_pred HHHHHHHHcCCCeEEecC----CCCC----------CCHHHHHHHHHHcCCeeEEEec--CCc-----cccCCCCCchhH
Q psy13372 25 DKYRVAAELGFRYIESWF----PPVG----------VTLEQLVAAQTRHGLKQVLINT--EVD-----ENFGYAAVKGKE 83 (273)
Q Consensus 25 ~~l~~~~~~G~~~vEl~~----~~~~----------~~~~~~~~~l~~~gL~i~~~~~--~~~-----~~~~~~~~~~~~ 83 (273)
.+++.++++|+.++-++- |.+. .-++.+++.+++.|+++..... +.. +.. .++++++|
T Consensus 82 aaFef~~kLg~~~~~FHD~D~~peg~~~~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~GA~-TnPd~~Vr 160 (434)
T TIGR02630 82 AAFEFFEKLGVPYYCFHDRDIAPEGASLRETNANLDEIVDLIKEKQKETGVKLLWGTANLFSHPRYMHGAA-TSPDADVF 160 (434)
T ss_pred HHHHHHHHhCCCeeccCccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCccCCccccCCcC-CCCCHHHH
Confidence 345558999999998873 3321 1136788889999999975433 211 222 45789999
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCc--EEEEccCCCCCCCCcc
Q psy13372 84 SEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSL--TALIEPVNQHSVPGYY 161 (273)
Q Consensus 84 ~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv--~i~lE~~~~~~~~~~~ 161 (273)
+.+++++++.++++++||+..++++.|.-+.+.....+....|+++++.++.+++++.+.|. +++|||-+..+....+
T Consensus 161 a~A~~qvk~alD~~~eLGgenyV~WgGREGye~~lntD~~~e~d~~~~~l~~~~dYa~~iGf~~~f~IEPKP~EPr~hqy 240 (434)
T TIGR02630 161 AYAAAQVKKALEVTKKLGGENYVFWGGREGYETLLNTDMKRELDHLARFLHMAVDYAKKIGFKGQFLIEPKPKEPTKHQY 240 (434)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEECCCccccccccccCHHHHHHHHHHHHHHHHHHhhhcCCCceEEeccCCCCcccccc
Confidence 99999999999999999999999999877655322234778899999999999999999886 8999998776556778
Q ss_pred cCCHHHHHHHHHHHhhcCCC-ceeEeeecccccccCCChHHHHHhc--CCcceeEEeccCCCCCCCCCCCccc---H---
Q psy13372 162 LSSFRVAERLIRELRAHGIS-NVQLQFDFFNAQRICGDLTHTFGAC--RDLIGHVQIAQAPDRQEPHARGEID---Y--- 232 (273)
Q Consensus 162 ~~~~~~~~~li~~~~~~~~~-~~g~~~D~~h~~~~~~~~~~~i~~~--~~~i~~vHi~d~~~~~~~g~~G~id---~--- 232 (273)
..+...++.++ ++++.+ +||+++|++|+.+.|.++...+... ...+.++|+.+.+......+ +.++ +
T Consensus 241 d~d~at~l~fl---~~~gl~~~~gvNiE~~Ha~lAGh~~ahela~A~~~G~LgsId~N~Gd~~~GwDt-DqF~~~v~~~t 316 (434)
T TIGR02630 241 DFDAATVYAFL---KKYGLDKDFKLNIEANHATLAGHTFEHELRVARDNGLLGSIDANQGDLLLGWDT-DQFPTDVYETT 316 (434)
T ss_pred cccHHHHHHHH---HHcCChhhcccChhhhHHHHcCCChHHHHHHHHHcCCeeeeeCCCCCcccCCcC-CcCccchHHHH
Confidence 99999999999 888888 8999999999999999998887766 46799999988421221111 2211 2
Q ss_pred HHHHHHHHHcCC-CceEEEeeecCCC
Q psy13372 233 AYVFELLAREGY-EGYVGLEYKPQGN 257 (273)
Q Consensus 233 ~~i~~~L~~~gy-~g~~~lE~~~~~~ 257 (273)
-.++..|+..|| +|.+-+..++++.
T Consensus 317 l~~~~iLk~gG~~~Gg~nFDak~rR~ 342 (434)
T TIGR02630 317 LAMYEVLKNGGFTTGGLNFDAKVRRE 342 (434)
T ss_pred HHHHHHHHHcCCCCCCcccccCCCcC
Confidence 234567888887 9999999887654
No 25
>PRK05474 xylose isomerase; Provisional
Probab=99.78 E-value=6.6e-17 Score=141.64 Aligned_cols=227 Identities=13% Similarity=0.115 Sum_probs=172.5
Q ss_pred HHHHHHHcCCCeEEecC----CCCC----C--C----HHHHHHHHHHcCCeeEEEec--CCc-----cccCCCCCchhHH
Q psy13372 26 KYRVAAELGFRYIESWF----PPVG----V--T----LEQLVAAQTRHGLKQVLINT--EVD-----ENFGYAAVKGKES 84 (273)
Q Consensus 26 ~l~~~~~~G~~~vEl~~----~~~~----~--~----~~~~~~~l~~~gL~i~~~~~--~~~-----~~~~~~~~~~~~~ 84 (273)
+++.++++|+.++-++- |.+. . . ++.+++.+++.|+++..... +.. +.. .++++++|+
T Consensus 84 afe~~~kLg~~~~~FHD~D~~peg~s~~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~GA~-Tnpd~~Vra 162 (437)
T PRK05474 84 AFEFFTKLGVPYYCFHDVDVAPEGASLKEYNANLDEIVDYLKEKQAETGVKLLWGTANLFSNPRYMAGAA-TNPDPDVFA 162 (437)
T ss_pred HHHHHHHhCCCeeccCccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCeeeeeccCccCCccccCCcC-CCCCHHHHH
Confidence 34458999999998873 3321 1 1 35668889999999985433 211 222 457899999
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCc--EEEEccCCCCCCCCccc
Q psy13372 85 EFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSL--TALIEPVNQHSVPGYYL 162 (273)
Q Consensus 85 ~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv--~i~lE~~~~~~~~~~~~ 162 (273)
.++.+++++++++++||++.++++.|.-+.+.....+....|+++++.++.+++++.+.|. +++|||-+..+....+.
T Consensus 163 ~A~~qvk~alD~~~eLGge~yV~WgGREGye~~~ntD~~~e~d~~~~~l~~v~dYa~~iGf~~~f~IEPKP~EPr~hqyd 242 (437)
T PRK05474 163 YAAAQVKTALDATKRLGGENYVFWGGREGYETLLNTDLKREREQLARFLQMVVDYKHKIGFKGTFLIEPKPQEPTKHQYD 242 (437)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEECCCcccccchhhcCHHHHHHHHHHHHHHHHHHhhhcCCCceEEeccCCCCCCCcccc
Confidence 9999999999999999999999999877655322223677899999999999999999876 89999987765567789
Q ss_pred CCHHHHHHHHHHHhhcCCCc-eeEeeecccccccCCChHHHHHhc--CCcceeEEeccCCCCC-----CCCCCCcccHHH
Q psy13372 163 SSFRVAERLIRELRAHGISN-VQLQFDFFNAQRICGDLTHTFGAC--RDLIGHVQIAQAPDRQ-----EPHARGEIDYAY 234 (273)
Q Consensus 163 ~~~~~~~~li~~~~~~~~~~-~g~~~D~~h~~~~~~~~~~~i~~~--~~~i~~vHi~d~~~~~-----~~g~~G~id~~~ 234 (273)
.+...++.++ ++++.++ ||+++|++|+.+.|.++...+... ...+.++|+.+.+... .... +......
T Consensus 243 ~d~at~l~fl---~~~gl~~~~gvNiE~~Ha~mAGh~~ahela~A~~~G~LgsID~N~Gd~q~GwDtDqf~~-~v~~t~~ 318 (437)
T PRK05474 243 YDAATVYGFL---KQYGLEKEFKLNIEANHATLAGHTFEHELAVARALGILGSIDANRGDYQLGWDTDQFPN-NVYETTL 318 (437)
T ss_pred ccHHHHHHHH---HHhCCccccccchhhhHHHHcCCChHHHHHHHHHcCCeeeeeCCCCCcccCCCcCCCCc-cHHHHHH
Confidence 9999999999 9999888 999999999999999998887766 4578999998842122 2222 3334444
Q ss_pred HHHH-HHHcCC-CceEEEeeecCCC
Q psy13372 235 VFEL-LAREGY-EGYVGLEYKPQGN 257 (273)
Q Consensus 235 i~~~-L~~~gy-~g~~~lE~~~~~~ 257 (273)
++-. |+..|| +|.+-+..++++.
T Consensus 319 ~m~~iLk~gG~~~Gg~nFDak~rR~ 343 (437)
T PRK05474 319 AMYEILKAGGFTTGGLNFDAKVRRQ 343 (437)
T ss_pred HHHHHHHhCCCCCCCcccccCCCcC
Confidence 4444 444556 9999999887654
No 26
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=99.69 E-value=4e-16 Score=137.20 Aligned_cols=162 Identities=15% Similarity=0.058 Sum_probs=126.0
Q ss_pred hhHHHHHHHHHHHH-HHHHHcCCCeEEecCCCCCC-C---------CCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEE
Q psy13372 81 GKESEFRASLEKTI-QYACALNIPAIHIMSGKTES-S---------RTQPIASEDPYTTLKENLIYACAELERHSLTALI 149 (273)
Q Consensus 81 ~~~~~~~~~~~~~i-~~a~~lG~~~i~~~~G~~~~-~---------~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~l 149 (273)
+.++++.+++++.+ +.+.+|++..+...+|.-+. . .....+.++.|++++..|+++++.|+++||++++
T Consensus 153 e~~~~a~~~f~~~~~~~~~~L~~~ii~~lpGw~~~~~~~~~~~~~~~y~~i~~e~lwenl~yFL~~ViPvAEe~GV~LAi 232 (394)
T TIGR00695 153 EELIRAVEEASDMSEQDIAQLTRNIIAGLPGAEEGYTLDRFKELLAAYKDIDEEKLRDNLAFFLQEILPVAEEYGVQMAI 232 (394)
T ss_pred HHHHHHHHHHHhCCHHHHHHhhhhhhhcCCCCCccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 56777888888888 78889999999988883211 0 0012347899999999999999999999999999
Q ss_pred ccCCCCCC---CCcccCCHHHHHHHHHHHhhcCCCceeEeeecccccccC-CChHHHHHhcCCcceeEEeccCCC---C-
Q psy13372 150 EPVNQHSV---PGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRIC-GDLTHTFGACRDLIGHVQIAQAPD---R- 221 (273)
Q Consensus 150 E~~~~~~~---~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~-~~~~~~i~~~~~~i~~vHi~d~~~---~- 221 (273)
||..|... -...+++.+++.+++ +.++||+.|+|||+|.+.... .|+.+.++.+++||.++|+.|+.. .
T Consensus 233 HPDDPP~~i~GlpRIvst~ed~~rll---~~V~SpanGlt~CtGSlg~~~~ndl~~~i~~fg~RI~fvH~Rnv~~~g~~~ 309 (394)
T TIGR00695 233 HPDDPPRPILGLPRIVSTIEDMQWLV---ATSDSPANGFTMCTGSYGVRPDNDLVEMAKQFAGRIYFSHLRSTKREENPL 309 (394)
T ss_pred CCCCCCccccCCCcccCCHHHHHHHH---HhcCCccccEEEEecccccCCCCCHHHHHHHHccceeEEEEecccccCCCC
Confidence 99776421 035789999999999 999999999999999997644 689999999999999999999531 1
Q ss_pred --C--CCCCCCcccHHHHHH----HHHHcCCCc
Q psy13372 222 --Q--EPHARGEIDYAYVFE----LLAREGYEG 246 (273)
Q Consensus 222 --~--~~g~~G~id~~~i~~----~L~~~gy~g 246 (273)
. .... |..|...+++ .+.+.||+|
T Consensus 310 ~F~Ea~Hl~-Gd~DM~~v~kall~~~~~~~~~G 341 (394)
T TIGR00695 310 TFHEAAHLT-GDVDMNNVVKAVMEEEHRRDYEG 341 (394)
T ss_pred CceecccCC-CCccHHHHHHHHHHHhhhhccCC
Confidence 1 1223 5555555555 555777898
No 27
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=99.65 E-value=2.2e-14 Score=124.07 Aligned_cols=211 Identities=14% Similarity=0.105 Sum_probs=150.7
Q ss_pred CHHHHHHHHHHcCCCeEEecC---CCC--------------CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWF---PPV--------------GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKES 84 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~---~~~--------------~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~ 84 (273)
++..++++..+.|+...-+.. |+. ....+++++.++++|+.++.+ .++..+.+ +++++.++
T Consensus 49 ~l~~~l~~~~~~~I~~~R~sS~l~P~~~h~~~~~w~~~~~~~~~~~~~g~~~~~~~irls~H-p~y~inL~-S~~~ev~e 126 (303)
T PRK02308 49 NLLRILKYNIAHGIGLFRLSSSLIPLATHPELEGWDYIEPFKEELREIGEFIKEHNIRLSFH-PDQFVVLN-SPKPEVVE 126 (303)
T ss_pred HHHHHHHHHHHCCCCEEEcccCcCCCCCChhhcccCCCCCCHHHHHHHHHHHHHcCCCeecc-ChhhhcCC-CCCHHHHH
Confidence 567788899999988887773 321 113578899999999977765 43323332 35789999
Q ss_pred HHHHHHHHHHHHHHHcCCC---eEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcc
Q psy13372 85 EFRASLEKTIQYACALNIP---AIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYY 161 (273)
Q Consensus 85 ~~~~~~~~~i~~a~~lG~~---~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~ 161 (273)
.+++.+...++.+..||++ .|++|+|+...+ .+..++++++.+.++.+.. ++++++||+..
T Consensus 127 ~Si~~L~~~~~~~~~lG~~~~~~vViHpG~~~~~------ke~al~r~~~~l~~l~~~~---~~~L~LEN~~~------- 190 (303)
T PRK02308 127 NSIKDLEYHAKLLDLMGIDDSSKINIHVGGAYGD------KEKALERFIENIKKLPESI---KKRLTLENDDK------- 190 (303)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECCCccCCC------HHHHHHHHHHHHHHhhHHh---CCEEEEeeCCC-------
Confidence 9999999999999999999 999999986433 5678999999999986664 69999999753
Q ss_pred cCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCCh--HHHH----HhcC--CcceeEEeccCCC--CCCCCCCCccc
Q psy13372 162 LSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDL--THTF----GACR--DLIGHVQIAQAPD--RQEPHARGEID 231 (273)
Q Consensus 162 ~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~--~~~i----~~~~--~~i~~vHi~d~~~--~~~~g~~G~id 231 (273)
..+++++..++ ++++ +.+|||++|....+.++ .+.+ +... +++.++|++|... +..--. +.|+
T Consensus 191 ~~t~~ell~I~---e~~~---ipv~~D~hH~~~~g~~l~~~e~~~~~~~tw~~~~~~~~iHlsd~k~~~~~~rHa-~~I~ 263 (303)
T PRK02308 191 TYTVEELLYIC---EKLG---IPVVFDYHHHMCNPDGESLEEALELAFETWEHEDLPPKVHISSPREGKKPRAHA-DYID 263 (303)
T ss_pred CCCHHHHHHHH---HHcC---CCEEEeHHhhhhcCCCCChHHHHHHHHHHhhccCCCeeEEeCCCCCCCCCCcch-hhcC
Confidence 27899999999 9885 44999999988776653 2233 3222 4689999999622 111112 3444
Q ss_pred HHHHHHHHHHc-CCCceEEEeeecCCC
Q psy13372 232 YAYVFELLARE-GYEGYVGLEYKPQGN 257 (273)
Q Consensus 232 ~~~i~~~L~~~-gy~g~~~lE~~~~~~ 257 (273)
...+...+... |++..+.+|.+..+.
T Consensus 264 ~~~f~~~l~~~~~~~~dimiEaK~Ke~ 290 (303)
T PRK02308 264 VDDFPSFLHEAIVPDIDIMIEAKQKEL 290 (303)
T ss_pred HHHHHHHHHhccCCCceEEEEecchHH
Confidence 44444444332 367788899875543
No 28
>PRK12465 xylose isomerase; Provisional
Probab=99.63 E-value=1.4e-13 Score=119.75 Aligned_cols=225 Identities=13% Similarity=0.121 Sum_probs=162.8
Q ss_pred HHHHHHHHHHcCCCeEEecC----CCCC----------CCHHHHHHHHHHcCCeeEEEec--CCc-----cccCCCCCch
Q psy13372 23 YLDKYRVAAELGFRYIESWF----PPVG----------VTLEQLVAAQTRHGLKQVLINT--EVD-----ENFGYAAVKG 81 (273)
Q Consensus 23 ~~~~l~~~~~~G~~~vEl~~----~~~~----------~~~~~~~~~l~~~gL~i~~~~~--~~~-----~~~~~~~~~~ 81 (273)
.+..++.+.++|+.++-++- |.+. .-++.+++.+++.|+++..... +.. +.. .+++++
T Consensus 91 ~daaFEf~~kLG~~~~~FHD~D~~Peg~s~~E~~~nld~iv~~~k~~~~~tGikllw~TaNlFs~prf~~GA~-TnPD~~ 169 (445)
T PRK12465 91 SDAAFEFFTKLGVPYYCFHDIDLAPDADDIGEYESNLKHMVGIAKQRQADTGIKLLWGTANLFSHPRYMNGAS-TNPDFN 169 (445)
T ss_pred HHHHHHHHHHhCCCeeeccccccCCCCCCHHHHHHHHHHHHHHHHHHhhhhCceeeeeccccccCccccCCcC-CCCCHH
Confidence 45568889999999998883 3320 1136778889999999975432 211 222 457899
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHH----HHHhhCCc--EEEEccCCCC
Q psy13372 82 KESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYAC----AELERHSL--TALIEPVNQH 155 (273)
Q Consensus 82 ~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~----~~a~~~gv--~i~lE~~~~~ 155 (273)
+|+.++++++++++++++||+..++++.|.-+.+.. ....|.+..+++.++. +++.+.|. +++|||-+..
T Consensus 170 Vra~A~~qvk~alD~~~eLGgenyV~WGGREGye~l----~ntd~~~e~d~~a~fl~ma~dY~~~iGf~g~f~IEPKP~E 245 (445)
T PRK12465 170 VVARAAVQVKAAIDATVELGGENYVFWGGREGYACL----HNTQMKREQDNMARFLTLARDYGRSIGFKGNFLIEPKPME 245 (445)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEECCCccchhhh----hhhhHHHHHHHHHHHHHHHHHHhHhcCCCceEEeccCCCC
Confidence 999999999999999999999999999987765532 4455666666555554 55556565 8999998776
Q ss_pred CCCCcccCCHHHHHHHHHHHhhcCCC-ceeEeeecccccccCCChHHHHHhcC--CcceeEEeccCCCCC-----CCCCC
Q psy13372 156 SVPGYYLSSFRVAERLIRELRAHGIS-NVQLQFDFFNAQRICGDLTHTFGACR--DLIGHVQIAQAPDRQ-----EPHAR 227 (273)
Q Consensus 156 ~~~~~~~~~~~~~~~li~~~~~~~~~-~~g~~~D~~h~~~~~~~~~~~i~~~~--~~i~~vHi~d~~~~~-----~~g~~ 227 (273)
+....+..+...++.+| ++++.+ +||+++|++|+.+.|.++...+.... ..+.++|+.+.+... ....
T Consensus 246 Pr~hqyd~d~aT~l~fL---~~~gl~~~~glNiE~nHatlAGh~faHela~A~~~GkLgsID~N~gd~~~GWDtDqFp~- 321 (445)
T PRK12465 246 PMKHQYDFDSATVIGFL---RQHGLDQDFKLNIEANHATLSGHSFEHDLQVASDAGLLGSIDANRGNPQNGWDTDQFPT- 321 (445)
T ss_pred CCccccCCcHHHHHHHH---HHcCCccccccchhhhhHHHcCCChHHHHHHHHHcCCeeeeECCCCCcccCcccccCCc-
Confidence 55677889999999999 888888 89999999999999999988887664 578999998853221 1112
Q ss_pred Cccc-HHHHHHHHHHcCCC-ceEEEeeecCC
Q psy13372 228 GEID-YAYVFELLAREGYE-GYVGLEYKPQG 256 (273)
Q Consensus 228 G~id-~~~i~~~L~~~gy~-g~~~lE~~~~~ 256 (273)
-..+ -....+.|+.-||. |-+-+..+.++
T Consensus 322 ~~~e~t~am~~iLk~gG~~~GG~NFDaK~RR 352 (445)
T PRK12465 322 DLYDTVGAMLVVLRQGGLAPGGLNFDAKVRR 352 (445)
T ss_pred chHHHHHHHHHHHHhCCcCCCCcCccccccc
Confidence 1222 22345678888885 45666666544
No 29
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=99.63 E-value=1e-14 Score=126.18 Aligned_cols=224 Identities=18% Similarity=0.133 Sum_probs=150.8
Q ss_pred HHHHHHHHHc-CCCeEEecCC---CC----CCCHHHHHHHHHHcCCeeEEEec-CCccccCCCCCchhHHHHHHHHHHHH
Q psy13372 24 LDKYRVAAEL-GFRYIESWFP---PV----GVTLEQLVAAQTRHGLKQVLINT-EVDENFGYAAVKGKESEFRASLEKTI 94 (273)
Q Consensus 24 ~~~l~~~~~~-G~~~vEl~~~---~~----~~~~~~~~~~l~~~gL~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (273)
.-.+..+++. |.++|--..+ .+ ..++.++++.++++||+...+.. +.....-+ ....|++.++++++.|
T Consensus 14 pv~l~~irQ~~Gv~giV~al~~~p~g~~W~~e~i~~~k~~ie~~GL~~~vIEsvpv~e~Ikl--G~~~RD~~Ieny~~~I 91 (351)
T PF03786_consen 14 PVTLWDIRQQPGVTGIVTALHDIPNGEVWDYEEIRALKERIEAAGLTLSVIESVPVHEDIKL--GLPGRDEEIENYKQTI 91 (351)
T ss_dssp SS-HHHHCTSTTEEEEEE--SSS-TTS---HHHHHHHHHHHHCTT-EEEEEES----HHHHC--T-TTHHHHHHHHHHHH
T ss_pred cchHHHHHHhcCCCCeeeCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEecCChHHHHhc--CCCcHHHHHHHHHHHH
Confidence 3456667776 9999988764 12 13467888999999999998753 21100001 2346888999999999
Q ss_pred HHHHHcCCCeEEe--cCCCCCCCCC-----------------------CC------------------------------
Q psy13372 95 QYACALNIPAIHI--MSGKTESSRT-----------------------QP------------------------------ 119 (273)
Q Consensus 95 ~~a~~lG~~~i~~--~~G~~~~~~~-----------------------~~------------------------------ 119 (273)
+.+.++|++.+.. .+. +.+.++ ++
T Consensus 92 rnlg~~GI~vvcYNFMPv-~dWtRT~l~~~~rgGa~~l~Fd~~~~~~~d~~il~~~~a~~~~~lPg~~~~~~~~~~~~l~ 170 (351)
T PF03786_consen 92 RNLGKAGIKVVCYNFMPV-FDWTRTDLAYPLRGGATALRFDHDDFAAFDPHILKRPGAEADYTLPGWEEEYLEEFRELLA 170 (351)
T ss_dssp HHHHHTT--EEEEE--SS--S---SEEEEE-TTS-EEEEEECCCCCTS-HHHHHHT------------CCCHHHHHHHHH
T ss_pred HHHHhcCCCEEEEEeeee-eeeeeccccccCCCCcEEEEEcHHHHhccCHHhhhccccccCCCCCCCChHHHHHHHHHHH
Confidence 9999999998744 232 111100 00
Q ss_pred ----CCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCC---CCcccCCHHHHHHHHHHHhhcCCCceeEeeecccc
Q psy13372 120 ----IASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSV---PGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNA 192 (273)
Q Consensus 120 ----~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~---~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~ 192 (273)
.+.++.|+++.-.|+++++.|+++||+++++|-.|... --..+.+.+...+++ +.++||+-|+||.+|.+
T Consensus 171 ~y~~i~~e~lw~nl~yFL~~v~PvAEe~gV~laiHPDDPP~~~~GlpRi~~~~e~~~~~~---~~~~Sp~nGltfC~Gs~ 247 (351)
T PF03786_consen 171 AYGGIDEEQLWENLKYFLEAVIPVAEEAGVKLAIHPDDPPWPLFGLPRIVSTAEDLKRIL---DLVDSPANGLTFCTGSL 247 (351)
T ss_dssp HCCT--HHHHHHHHHHHHHHHHHHHHHCT-EEEEE--SSSS-BTTB---TTSHHHHHHHH---HCT-STTEEEEEECCHH
T ss_pred HhcCCCHHHHHHHHHHHHHhhhHHHHHhCCEEEeCCCCCCCccCCCCcccCCHHHHHHHH---HhCCCccccEEeecCcc
Confidence 12456789999999999999999999999999665321 022568999999999 99999999999999998
Q ss_pred cccC-CChHHHHHhcCC-cceeEEeccCCCC--------CCCCCCCcccHHHHHHHHHHcCCCceEEEeeec
Q psy13372 193 QRIC-GDLTHTFGACRD-LIGHVQIAQAPDR--------QEPHARGEIDYAYVFELLAREGYEGYVGLEYKP 254 (273)
Q Consensus 193 ~~~~-~~~~~~i~~~~~-~i~~vHi~d~~~~--------~~~g~~G~id~~~i~~~L~~~gy~g~~~lE~~~ 254 (273)
.... .|+.+.++.+++ ||.++|+.+..+. ....+ |.+|...++++|.+.||+|++.-.+.+
T Consensus 248 g~~~~ndl~~~ir~f~~~rI~fvH~Rnv~~~~~~~~F~E~~h~~-G~~Dm~~v~~al~~~~~~g~~rpDHg~ 318 (351)
T PF03786_consen 248 GAMPDNDLPEMIREFGERRIHFVHFRNVKGEPGDGSFEEAFHLD-GDVDMYAVMKALRDVGYDGPMRPDHGP 318 (351)
T ss_dssp HCSTTS-HHHHHHHCHHTGEEEEEE-EEEEE-STTEEEEE-SSC-SSS-HHHHHHHHHHCT-ECEEEE----
T ss_pred ccCCCCCHHHHHHHHhccCcceEEecccccccCCCCEEecCCcC-CCccHHHHHHHHHHhCCCceecCCCCc
Confidence 6544 689999999999 9999999986322 13456 999999999999999999999888764
No 30
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=99.63 E-value=2.2e-13 Score=119.66 Aligned_cols=234 Identities=15% Similarity=0.134 Sum_probs=167.5
Q ss_pred ccCHHHHHHHHHHc-CCCeEEec----CCCCCCCHHHHHHHHHHcCCeeEEEecC-C--------ccccC--CCCCchhH
Q psy13372 20 AANYLDKYRVAAEL-GFRYIESW----FPPVGVTLEQLVAAQTRHGLKQVLINTE-V--------DENFG--YAAVKGKE 83 (273)
Q Consensus 20 ~~~~~~~l~~~~~~-G~~~vEl~----~~~~~~~~~~~~~~l~~~gL~i~~~~~~-~--------~~~~~--~~~~~~~~ 83 (273)
..+++|.++.+++. ++.++... .+|+..+.+++++.++++||.+..++.. + ++..| .+++++.|
T Consensus 66 ~R~~~E~i~D~~~v~~Lt~~~~~v~LH~~wd~vD~~elk~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSLtnPD~~VR 145 (412)
T TIGR02629 66 PRGIFDKLEDCAVIQQLTRATPNVSLHIPWDKADPKELKARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSLSHTDAATR 145 (412)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCccccCCCCcCCHHHHHHHHHHcCCccceeccccccCcccccccccccccCCCCHHHH
Confidence 35788888777665 57755554 4565468999999999999999977753 1 11112 34789999
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCccc-
Q psy13372 84 SEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYL- 162 (273)
Q Consensus 84 ~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~- 162 (273)
+.+++..++++++++++|.+.|+++.| .+...+........|++++++|+++.+..-+ +.++++|.-... |+.+.
T Consensus 146 ~~AIeh~~~~i~Ig~elGs~~v~IW~g-DG~~yP~Q~~~~~~~~rl~esL~eI~~~~pd-~~k~~iEyKpfE--P~~ys~ 221 (412)
T TIGR02629 146 RQAVEHNLECIEIGKALGSKALTVWIG-DGSNFPGQSNFTRAFERYLDAMKAVYAGLPD-DWKLFTEHKMYE--PAFYST 221 (412)
T ss_pred HHHHHHHHHHHHHHHHhCCCeeEEECC-CCCCCcCccchHHHHHHHHHHHHHHHhhCCc-cceEEEecccCC--Cceeee
Confidence 999999999999999999999999988 4333221122555899999999999988766 679999975543 43333
Q ss_pred --CCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhc--CCcceeEEeccCC-CCCCCCCCCcccHHHHHH
Q psy13372 163 --SSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGAC--RDLIGHVQIAQAP-DRQEPHARGEIDYAYVFE 237 (273)
Q Consensus 163 --~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~--~~~i~~vHi~d~~-~~~~~g~~G~id~~~i~~ 237 (273)
++.....-++ ++++.+++ +|+|+||+. .+.++...+..+ ..++..+|+.|.. +-.-.-- |.++.-.++.
T Consensus 222 ~v~d~g~~yl~~---~~lg~~~~-vlLD~GH~~-P~~nie~ivs~ll~~gkL~GfHfNd~~ygDDdL~v-GSv~p~qlf~ 295 (412)
T TIGR02629 222 VVQDWGTNYLIA---QELGPKAF-CLVDLGHHA-PNVNIEMIVARLIQFKKLGGFHFNDSKYGDDDLDA-GSIDPYRLFL 295 (412)
T ss_pred echHHHHHHHHH---HHhCCCcE-EEeecCCCC-cccCHHHHHHHHHhhCCcceeecCCCCcccCCcce-ecCCHHHHHH
Confidence 4445667777 88888888 999999995 467777666554 3679999999942 2122334 8888777666
Q ss_pred HHH---Hc------CCCceEEEeeec-CCChHHHHH
Q psy13372 238 LLA---RE------GYEGYVGLEYKP-QGNTKEGLE 263 (273)
Q Consensus 238 ~L~---~~------gy~g~~~lE~~~-~~~~~~~~~ 263 (273)
.+. +. +|+|.+.+.-.+ .+++.+++.
T Consensus 296 i~~el~~~~~~~~~~~~~~~m~Dq~hn~edpie~~~ 331 (412)
T TIGR02629 296 VFNELVDAEARGAKGFDPAHMLDQSHNVTDPIESLM 331 (412)
T ss_pred HHHHHHHhhccccCCCCceEEEecCCCCCcchHHHH
Confidence 443 33 799999998664 455555544
No 31
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=3.1e-12 Score=108.39 Aligned_cols=218 Identities=16% Similarity=0.143 Sum_probs=163.7
Q ss_pred HHHHHHHHHcCCCeEEecCC---CC----CCCHHHHHHHHHHcCCeeEEEec-CCccccCCCCCchhHHHHHHHHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFP---PV----GVTLEQLVAAQTRHGLKQVLINT-EVDENFGYAAVKGKESEFRASLEKTIQ 95 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~---~~----~~~~~~~~~~l~~~gL~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (273)
.-.++.++++|.++|--..+ .+ ..++.++++.++++||..+.+-. |..-..-. -...|++.++++++.|+
T Consensus 13 ~v~l~~irQ~Gv~gIV~aLh~iP~g~~W~~~~I~~~k~~ie~~Gl~~~vvESvPvhedIK~--g~~~rd~~Ieny~~tir 90 (362)
T COG1312 13 PVTLEDIRQAGVKGVVTALHHIPAGEVWPVEEILKRKEEIESAGLTWSVVESVPVHEDIKL--GTPTRDRYIENYKQTIR 90 (362)
T ss_pred CccHHHHHHhCccceeccCCCCCCCCcCcHHHHHHHHHHHHHcCceEEeecCCCHHHHHHh--cCCcHHHHHHHHHHHHH
Confidence 34567777889999976643 11 23467888999999999987643 22111101 12367889999999999
Q ss_pred HHHHcCCCeEEe--cCCCCCCCCC--------------------------------------------------------
Q psy13372 96 YACALNIPAIHI--MSGKTESSRT-------------------------------------------------------- 117 (273)
Q Consensus 96 ~a~~lG~~~i~~--~~G~~~~~~~-------------------------------------------------------- 117 (273)
..+++|++.+.- .|.. .+.++
T Consensus 91 nLa~~GI~vvCYNfMpv~-dWtRTdl~~~l~~gs~alrfd~~~~~a~~~~a~~~~~~~~~~~~~~~m~glPG~~~~~tl~ 169 (362)
T COG1312 91 NLARAGIKVVCYNFMPVF-DWTRTDLEYPLPDGSEALRFDKADFAAFDLHAEYQEEIARAEERFAEMSGLPGWEEGYTLD 169 (362)
T ss_pred HHHhcCCcEEEecccccc-CccccceeeecCCCCeeEeeeHhhhhccccccccHHHHHHHHHhhhcccCCCCCcccccHH
Confidence 999999997633 3221 00000
Q ss_pred ---------CCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCC---CCcccCCHHHHHHHHHHHhhcCCCceeE
Q psy13372 118 ---------QPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSV---PGYYLSSFRVAERLIRELRAHGISNVQL 185 (273)
Q Consensus 118 ---------~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~---~~~~~~~~~~~~~li~~~~~~~~~~~g~ 185 (273)
..++.+..|+++...|+++.+.|++.||+++++|-.|... --..++|.+.+.+++ +.+++|+=|+
T Consensus 170 ~~~~~~~~y~~Id~~~L~~nL~yFL~~ViPVAEe~gVkmaiHPDDPP~pi~GLpRIvst~ed~~~ll---~~vdSp~NGi 246 (362)
T COG1312 170 QFRELLELYGGIDEEKLWENLAYFLKEVIPVAEEVGVKMAIHPDDPPWPIFGLPRIVSTIEDYQRLL---EMVDSPYNGI 246 (362)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcchHHhcCceEEeCCCCCCccccCcchhcCCHHHHHHHH---HhccCccCCE
Confidence 0124567799999999999999999999999999766322 123578999999999 9999999999
Q ss_pred eeecccccc-cCCChHHHHHhcCCcceeEEeccCCCC-------CCCCCCCcccHHHHHHHHHHcCCCceE
Q psy13372 186 QFDFFNAQR-ICGDLTHTFGACRDLIGHVQIAQAPDR-------QEPHARGEIDYAYVFELLAREGYEGYV 248 (273)
Q Consensus 186 ~~D~~h~~~-~~~~~~~~i~~~~~~i~~vHi~d~~~~-------~~~g~~G~id~~~i~~~L~~~gy~g~~ 248 (273)
++.+|.+-. ...|+.+.++.+++||..+|+.+.... ....+ |.+|.-.+++++.+.||+|++
T Consensus 247 TlCtGS~G~~~dnDl~~mir~F~~rI~F~H~Rnv~~~~~~sF~E~~hle-G~~Dm~~vmka~~ee~~~G~i 316 (362)
T COG1312 247 TLCTGSLGARADNDLPEMIREFASRIHFVHLRNVKREEPGSFHETAHLE-GDTDMVAVMKALHEEGYDGYI 316 (362)
T ss_pred EEeccccccCccccHHHHHHHHhhhchhhhhhhcccCCCCCeeeccccC-CCccHHHHHHHHHhccccCcc
Confidence 999999854 347899999999999999999986432 13456 999999999999999999883
No 32
>KOG3997|consensus
Probab=99.41 E-value=8.4e-12 Score=99.50 Aligned_cols=233 Identities=16% Similarity=0.149 Sum_probs=160.3
Q ss_pred CHHHHHHHHHHcCCCeEEecCC---------CCCCCHHHHHHHHHHcCCeeE---EEecCCccccCCCCCchhHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFP---------PVGVTLEQLVAAQTRHGLKQV---LINTEVDENFGYAAVKGKESEFRAS 89 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~---------~~~~~~~~~~~~l~~~gL~i~---~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (273)
.+...+-.+.-.|++..-+... +....++.+.++.....-.+. -++.+. -+.+ +++.+.++++.+-
T Consensus 14 gi~~~~~n~~~~g~ns~AmFvksqRkw~sp~msee~ae~f~kaa~~~~~~l~qivpHGsYl-iN~~-npd~ek~eks~~~ 91 (281)
T KOG3997|consen 14 GIEQAIYNAFAEGCNSCAMFVKSQRKWNSPPMSEEVAEKFWKAARETNFPLDQIVPHGSYL-INAG-NPDAEKLEKSREC 91 (281)
T ss_pred cHHHHHHHHHHhccchHHHHHhCccccCCCCccHHHHHHHHHHHHhccCchhhcccccchh-cccC-CccHHHHHHHHHH
Confidence 4566777777778777655531 111234666655444443332 222221 1222 3677789999999
Q ss_pred HHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHH
Q psy13372 90 LEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAE 169 (273)
Q Consensus 90 ~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~ 169 (273)
+..-++.|++||+....+|||..... + .++.+.++.+.+..+.+ +..+|.|.+|||... .+....|.++..
T Consensus 92 ~vDdl~Rce~LGIgmYN~HPGSt~~~-~----kee~l~~ia~~in~a~e--etk~V~ivlEnMAGq--Gn~vG~tfeelk 162 (281)
T KOG3997|consen 92 FVDDLQRCEKLGIGMYNFHPGSTVGK-E----KEECLTTIAETINFAVE--ETKNVIIVLENMAGQ--GNSVGGTFEELK 162 (281)
T ss_pred HHHHHHHHHHhCceeeecCCCccccc-c----HHHHHHHHHHHHHHHHH--hccceEEEeecccCC--CCcccccHHHHH
Confidence 99999999999999999999875332 1 55666666666666544 346899999999874 667888999999
Q ss_pred HHHHHHhhcC-CCceeEeeecccccccCCC------hHHHHHhcC-----CcceeEEeccCC-------CCC-CCCCCCc
Q psy13372 170 RLIRELRAHG-ISNVQLQFDFFNAQRICGD------LTHTFGACR-----DLIGHVQIAQAP-------DRQ-EPHARGE 229 (273)
Q Consensus 170 ~li~~~~~~~-~~~~g~~~D~~h~~~~~~~------~~~~i~~~~-----~~i~~vHi~d~~-------~~~-~~g~~G~ 229 (273)
.++ ..+. ...+|+|+|++|....|-| ....++++. .++..+|+.|.. +++ ..|. |-
T Consensus 163 ~ii---~~Ikdk~RigVClDTCH~FaaGyDI~Tee~y~evmkeFdevVG~kylka~HiNDSK~~lGskrD~HE~iGq-G~ 238 (281)
T KOG3997|consen 163 FII---GKIKDKSRIGVCLDTCHTFAAGYDIRTEEAYEEVMKEFDEVVGWKYLKAIHINDSKAPLGSKRDRHEHIGQ-GK 238 (281)
T ss_pred HHH---HhhcchhhheeeHhhhhhhccccccchHHHHHHHHHHHHHHhhHHHHhheeecCcccccccccchHHhhcc-ch
Confidence 999 8774 3679999999999877765 334455543 578899999963 233 4688 88
Q ss_pred ccHHHHHHHHHHcCCCc-eEEEeeecCCChHHHHHHHHHhhc
Q psy13372 230 IDYAYVFELLAREGYEG-YVGLEYKPQGNTKEGLEEFLKTFD 270 (273)
Q Consensus 230 id~~~i~~~L~~~gy~g-~~~lE~~~~~~~~~~~~~~~~~~~ 270 (273)
+-.+.+.=...+.-++| ++++|....+...+... +|.+.+
T Consensus 239 iG~~~Frlimn~~~~dgIPliLETP~egky~ee~~-~l~nl~ 279 (281)
T KOG3997|consen 239 IGKAAFRLIMNDNRLDGIPLILETPDEGKYKEEMD-ILYNLG 279 (281)
T ss_pred hhHHHHHHHhccccccCcceEEeCCCccccHHHHH-HHHHhc
Confidence 88776655555555777 69999655667777777 777654
No 33
>PLN02923 xylose isomerase
Probab=99.35 E-value=3.2e-10 Score=99.12 Aligned_cols=228 Identities=15% Similarity=0.105 Sum_probs=164.3
Q ss_pred HHHHHHcCCCeEEecC----CCCC----C------CHHHHHHHHHHcCCeeEEEe--cCCc--ccc--CCCCCchhHHHH
Q psy13372 27 YRVAAELGFRYIESWF----PPVG----V------TLEQLVAAQTRHGLKQVLIN--TEVD--ENF--GYAAVKGKESEF 86 (273)
Q Consensus 27 l~~~~~~G~~~vEl~~----~~~~----~------~~~~~~~~l~~~gL~i~~~~--~~~~--~~~--~~~~~~~~~~~~ 86 (273)
++.+.++|+.++-++- |.+. . -++.+++.+++.|+++.-.. .+.. +-. ..+++++++.-+
T Consensus 129 FEf~~kLG~~y~cFHD~Dl~Peg~sl~E~~~nld~ivd~~ke~~~~TGikllwgTaNlFshPrf~~GAaTspd~dV~ayA 208 (478)
T PLN02923 129 FEFLKKLGVDRWCFHDRDIAPDGKTLEESNANLDEVVALAKELQEGTKIRPLWGTAQLFKHPRYMHGAATSSEVGVYAYA 208 (478)
T ss_pred HHHHHHhCCCeEccCccccCCCCCCHHHHHhhHHHHHHHHHHHhHhhCceeeeeccccccCccccCCcCCCCCHHHHHHH
Confidence 4488999999998873 3321 1 13677788899999987433 2221 111 145789999999
Q ss_pred HHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCC--cEEEEccCCCCCCCCcccCC
Q psy13372 87 RASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHS--LTALIEPVNQHSVPGYYLSS 164 (273)
Q Consensus 87 ~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~g--v~i~lE~~~~~~~~~~~~~~ 164 (273)
..+++++++++++||+...+++.|+-+.+..-..+....++++.+.|.-+++++++.| .+++|||-+..+....+..+
T Consensus 209 aaqvk~ald~t~eLGgenYVfWGGREGyetllntD~k~e~d~~a~fl~ma~dY~~~iGf~g~flIEPKP~EPtkHqYd~d 288 (478)
T PLN02923 209 AAQVKKAMEVTHYLGGENYVFWGGREGYQTLLNTDMERELDHLARFLEAAVAYKKKIGFNGTLLIEPKPQEPTKHQYDWD 288 (478)
T ss_pred HHHHHHHHHHHHHhCCCeEEecCCccchhhhcccCHHHHHHHHHHHHHHHHHHHHhcCCCceEEecCCCCCCCCCccCcc
Confidence 9999999999999999999999887654321111256678888999999999998876 47999998776556778999
Q ss_pred HHHHHHHHHHHhhcCCCc-eeEeeecccccccCCChHHHHHhcC--CcceeEEeccCCCCCCCCC-CCcccHHH----HH
Q psy13372 165 FRVAERLIRELRAHGISN-VQLQFDFFNAQRICGDLTHTFGACR--DLIGHVQIAQAPDRQEPHA-RGEIDYAY----VF 236 (273)
Q Consensus 165 ~~~~~~li~~~~~~~~~~-~g~~~D~~h~~~~~~~~~~~i~~~~--~~i~~vHi~d~~~~~~~g~-~G~id~~~----i~ 236 (273)
...++.++ +..+.+. |++++.++|..++|-++...|.... ..+++|+....+.+....+ +--.|... ..
T Consensus 289 ~at~laFL---~~~gl~~~fklNiE~nHatLAGhtf~Hela~A~~~G~LgSIDaN~GD~q~GwdtDQfp~d~~e~t~~m~ 365 (478)
T PLN02923 289 AATAANFL---RKYGLIDEFKLNIECNHATLSGHSCHHELETARINGLLGNIDANTGDAQTGWDTDQFLTDIAEATMVML 365 (478)
T ss_pred HHHHHHHH---HHhCChhhcccccchhhHHHcCCCcHHHHHHHHHcCCeeeeeCCCCCcccCcccccCCccHHHHHHHHH
Confidence 99999999 8887765 9999999999999999888887664 5677777766422211111 11122222 24
Q ss_pred HHHHHcC-CCceEEEeeecCCC
Q psy13372 237 ELLAREG-YEGYVGLEYKPQGN 257 (273)
Q Consensus 237 ~~L~~~g-y~g~~~lE~~~~~~ 257 (273)
+.|+.-| |+|.+-+..++++.
T Consensus 366 eiL~~GG~~~Gg~nFDaK~rR~ 387 (478)
T PLN02923 366 SVIKNGGLAPGGFNFDAKLRRE 387 (478)
T ss_pred HHHHhCCCCCCCCCcCCCCCcC
Confidence 5566666 88999999887653
No 34
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.03 E-value=7.2e-08 Score=83.16 Aligned_cols=210 Identities=11% Similarity=0.078 Sum_probs=145.6
Q ss_pred cCHHHHHHHHHHcCCCeEEecC---CCC---C----------CCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHH
Q psy13372 21 ANYLDKYRVAAELGFRYIESWF---PPV---G----------VTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKES 84 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~---~~~---~----------~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~ 84 (273)
.++..++++..+.|+...-+.. |+. . ...+++++..+++|+.++.+-.++ ...+ ++.+++.+
T Consensus 52 ~~l~~~L~~n~~~~I~f~RisS~l~P~ash~~~~~~~~~~~~~~l~~iG~~a~~~~iRLS~Hp~qf-i~Ln-S~~~evv~ 129 (312)
T TIGR00629 52 RDTMKTLHWNIGHGIPFYRFSSSIFPFASHPDVGYDLVTFAQKELREIGELAKTHQHRLTFHPGQF-TQFT-SPRESVVK 129 (312)
T ss_pred HHHHHHHHHHHHcCCcEEecCccccCcCcCchhhhhHHHHHHHHHHHHHHHHHHcCeEEEECCCcc-ccCC-CCCHHHHH
Confidence 3677888899999998888773 321 0 124788899999999999764432 2222 35789999
Q ss_pred HHHHHHHHHHHHHHHcCC-------CeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCC
Q psy13372 85 EFRASLEKTIQYACALNI-------PAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSV 157 (273)
Q Consensus 85 ~~~~~~~~~i~~a~~lG~-------~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~ 157 (273)
++++.+....++...||+ ..|++|+|+...+ .+..++++++.+.++.+.++ +++.+||...
T Consensus 130 ~Si~~L~~ha~~l~~mg~~~~~~~~~~iviH~Gg~~gd------k~~alerf~~n~~~L~~~i~---~rL~lEnd~k--- 197 (312)
T TIGR00629 130 SAIRDLAYHDEMLSAMKLAEQLNKDAVIIIHIGGAFGN------KDTTLARFHQNYKRLSQSIK---ERLVLENDDV--- 197 (312)
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCceEEEccCcCCCC------HHHHHHHHHHHHHHhhHHHH---hcEEeccCCC---
Confidence 999999999999999995 4788999876433 77899999999999988885 7999999642
Q ss_pred CCcccCCHHHHHHHHHHHhhcCCCceeEeeecccccccC-------CChH-HHHHhcC------CcceeEEeccCCCC--
Q psy13372 158 PGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRIC-------GDLT-HTFGACR------DLIGHVQIAQAPDR-- 221 (273)
Q Consensus 158 ~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~-------~~~~-~~i~~~~------~~i~~vHi~d~~~~-- 221 (273)
..|.++.+.++ ++++ +-++||+.|..... .++. +.+.+.. +..--+|++.....
T Consensus 198 ----~~sl~evL~lc---~e~~---iP~v~D~hHh~~n~~~~~~~~~~~~~~~~~~~~~TW~~~~~~pk~H~S~p~~~~~ 267 (312)
T TIGR00629 198 ----TWTVEDLLPVC---EELN---IPFVLDFHHHNINPGPLREGDLDVALPLIPRIIKTWERKGIQQKVHYSEPKDEQA 267 (312)
T ss_pred ----cCCHHHHHHHH---HhcC---CCEEEEhHHhhhCCCcccccccchhHHHHHHHHhhcccCCCCceEEecCCCCCCC
Confidence 36899999999 8874 88999998876432 2223 3333321 22357899963211
Q ss_pred CCCCCCCcccHHHHHHHHHHcCCCceEEEeeecCC
Q psy13372 222 QEPHARGEIDYAYVFELLAREGYEGYVGLEYKPQG 256 (273)
Q Consensus 222 ~~~g~~G~id~~~i~~~L~~~gy~g~~~lE~~~~~ 256 (273)
..+.. ..++-..+. .+...+.+-.+.+|.+..+
T Consensus 268 ~~~h~-d~~h~~~~~-~~~~~~~~~DiMiEAK~Ke 300 (312)
T TIGR00629 268 IRSHA-RRVHAPRVE-RFPPCGPNMDLMIEAKQKE 300 (312)
T ss_pred CCccc-cccChHHHh-hccccCCCCcEEEEeccHH
Confidence 12233 445544443 3455555556777765443
No 35
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=98.50 E-value=4.3e-06 Score=71.09 Aligned_cols=174 Identities=11% Similarity=0.127 Sum_probs=108.5
Q ss_pred cCHHHHHHHHHHcCCCeEEecC---CCC-----C--------CCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHH
Q psy13372 21 ANYLDKYRVAAELGFRYIESWF---PPV-----G--------VTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKES 84 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~---~~~-----~--------~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~ 84 (273)
.++.+++++..+.|+...-+.. |+. . ...+++++.++++|+.++.+=. .+-.--++++++.+
T Consensus 45 ~~l~~~L~~n~~~~I~~yRisS~liP~ashp~~~~~~~~~~~~~l~~iG~~~~~~~iRls~HP~--qf~vLnSp~~~Vv~ 122 (275)
T PF03851_consen 45 EDLLRILEYNIAHGIRFYRISSDLIPLASHPEVGWDWEEEFAEELAEIGDLAKENGIRLSMHPD--QFTVLNSPREEVVE 122 (275)
T ss_dssp HHHHHHHHHHHHTT--EEE--TTSSTTTTSTT--S-HHHHHHHHHHHHHHHHHHTT-EEEE-----TT--TT-SSHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEecCcccCCCCCCcccccchHHHHHHHHHHHHHHHHHcCCeEEecCC--cceeCCCCCHHHHH
Confidence 3678889999999998888874 421 0 1247888999999999997622 22221236799999
Q ss_pred HHHHHHHHHHHHHHHcCCC-----eEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCC
Q psy13372 85 EFRASLEKTIQYACALNIP-----AIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPG 159 (273)
Q Consensus 85 ~~~~~~~~~i~~a~~lG~~-----~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~ 159 (273)
+++..+.-..++...||.. .|++|.|+.-.+ .+.+.+++++.+.+|-+-+++ ++.|||-.
T Consensus 123 ~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~GG~Ygd------K~~al~RF~~~~~~L~~~ir~---rL~lENDd------ 187 (275)
T PF03851_consen 123 NSIRDLEYHARLLDLMGLDDSPDHKINIHVGGVYGD------KEAALERFIENFKRLPESIRK---RLTLENDD------ 187 (275)
T ss_dssp HHHHHHHHHHHHHHHTT-TT----EEEEE----SS-------HHHHHHHHHHHHHT--HHHHT---TEEEE--S------
T ss_pred HHHHHHHHHHHHHHHcCCCcccccEEEEeeCCCCCC------hHHHHHHHHHHHhhCCHhhhh---cEEEecCC------
Confidence 9999999999999999974 689999876444 678899999999999888887 79999932
Q ss_pred cccCCHHHHHHHHHHHhhcCCCceeEeeeccccccc---CCChHHHHH---hc-C--C---cceeEEeccC
Q psy13372 160 YYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRI---CGDLTHTFG---AC-R--D---LIGHVQIAQA 218 (273)
Q Consensus 160 ~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~---~~~~~~~i~---~~-~--~---~i~~vHi~d~ 218 (273)
-.-|.++.+.++ ++++ +=++||+.|.... +..+..... +. . + ..--+|++..
T Consensus 188 -~~yt~~d~L~ic---~~~g---iP~VfD~hHh~~~~~~~~~l~~~~~~~~~~~~TW~~~~~~pk~H~Ssp 251 (275)
T PF03851_consen 188 -KTYTVEDVLPIC---EKLG---IPMVFDYHHHRCNPPDEESLDEALPLLERILATWKRRGIRPKIHYSSP 251 (275)
T ss_dssp -SS--HHHHHHHH---HHHT-----EEEEHHHHHHS--TT--HHHHHH---HHGGG-SSS----EEEE--B
T ss_pred -CccCHHHHHHHH---HHhC---CCEEEEhHHhhcCCCCCcccchhhhHHHHHHhcccCCCCCceEEeCCC
Confidence 246899999999 9885 6689999888655 233333322 22 1 1 2367999963
No 36
>TIGR01748 rhaA L-rhamnose isomerase. This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including E. coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. Characterization of this family is based on members in E. coli and Salmonella.
Probab=98.39 E-value=3e-05 Score=68.04 Aligned_cols=210 Identities=11% Similarity=0.027 Sum_probs=138.1
Q ss_pred cCHHHHHHHHHHc-----CCCeEEecCCC---C---------CCCHHHHHHHHHHcCCeeEEEec--CCc--cccC---C
Q psy13372 21 ANYLDKYRVAAEL-----GFRYIESWFPP---V---------GVTLEQLVAAQTRHGLKQVLINT--EVD--ENFG---Y 76 (273)
Q Consensus 21 ~~~~~~l~~~~~~-----G~~~vEl~~~~---~---------~~~~~~~~~~l~~~gL~i~~~~~--~~~--~~~~---~ 76 (273)
.+++|.++-+.+. |-..|.++.+| + ..+.+.+++..+++||.+- ++. +.. +..| .
T Consensus 66 R~~~El~~D~~~~~~L~pg~~~vnLH~~y~~~d~~vdrd~~~p~hf~~w~~~Ak~~glglD-fNpn~Fsh~~~k~G~SLs 144 (414)
T TIGR01748 66 RTPSELRADLEKAMSLIPGKHRLNLHAIYLETDEPVSRDEIKPEHFKNWVEWAKANGLGLD-FNPTCFSHPLSADGFTLS 144 (414)
T ss_pred CCHHHHHHHHHHHHHhcCCCCceeeecccccCCCcccccccCcccHHHHHHHHHHcCCCcC-cCcccCCCccccCCCccc
Confidence 5677776655443 67888888876 3 2456899999999999987 664 221 2222 2
Q ss_pred CCCchhHHHHHHHHHHHHHH----HHHcCCCeE-EecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHH-HhhCCcEEEEc
Q psy13372 77 AAVKGKESEFRASLEKTIQY----ACALNIPAI-HIMSGKTESSRTQPIASEDPYTTLKENLIYACAE-LERHSLTALIE 150 (273)
Q Consensus 77 ~~~~~~~~~~~~~~~~~i~~----a~~lG~~~i-~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-a~~~gv~i~lE 150 (273)
+++++.|+..++..++++++ ++++|.+.+ .++.+.-... .|.+.-...+++.++|.++... .....++.++|
T Consensus 145 hpD~~iR~fwI~H~~~c~~I~~~fg~~lGs~~l~niWipDG~kd--~~~d~~~~r~Rl~eSLdeI~a~~l~~~~~~~~vE 222 (414)
T TIGR01748 145 HPDDSIRQFWIDHCKASRRISEYFGKELGTPSVMNIWIPDGMKD--IPVDRLTPRKRLLEALDEVFSEKLNEAHHIDAVE 222 (414)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCchhheeecCCCCCC--CCcccccHHHHHHHHHHHHHHhhcCchhhhhhhe
Confidence 46899999999999999999 899999998 8875432111 1112334488999999998766 44444677777
Q ss_pred cCCCCCCCC---cccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHh---cCCcceeEEeccCC----C
Q psy13372 151 PVNQHSVPG---YYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGA---CRDLIGHVQIAQAP----D 220 (273)
Q Consensus 151 ~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~---~~~~i~~vHi~d~~----~ 220 (273)
---.. ++ +-..+.+=..-++ -. ++.-+|+|+||..- ++++.+.|-. ..+++. +|+++.. +
T Consensus 223 ~KlFg--~g~EsYtvgs~df~~~ya---~~---~~~~~llD~GH~hP-tenIedkI~A~Ll~~~~L~-lH~sr~vrWDSD 292 (414)
T TIGR01748 223 SKLFG--LGAESYTVGSHEFYMGYA---TT---RQKLLCLDAGHFHP-TEVISNKISSAMLYVPQLL-LHVSRPVRWDSD 292 (414)
T ss_pred eeccc--cccceeeccchHHHHHHH---cc---CCcEEEEeCCCCCC-CCcHHHHHHHHHhcCCcee-EeecCCcccCCC
Confidence 52221 22 2234444445555 32 78899999999975 6777755554 367888 9999731 1
Q ss_pred CCCCCCCCcccHHHHHHHHHHcCCCc
Q psy13372 221 RQEPHARGEIDYAYVFELLAREGYEG 246 (273)
Q Consensus 221 ~~~~g~~G~id~~~i~~~L~~~gy~g 246 (273)
....++ =|...|+..|-+.++.+
T Consensus 293 Hv~~~D---Ddl~~I~~EiVr~~~l~ 315 (414)
T TIGR01748 293 HVVLLD---DELQEIASEIVRNDLLD 315 (414)
T ss_pred ceEEeC---HHHHHHHHHHHhcCccc
Confidence 112222 24578888888877543
No 37
>PRK01076 L-rhamnose isomerase; Provisional
Probab=98.35 E-value=0.00025 Score=62.60 Aligned_cols=212 Identities=12% Similarity=0.047 Sum_probs=139.9
Q ss_pred ccCHHHHHHHHHHc-----CCCeEEecCCCC------------CCCHHHHHHHHHHcCCeeEEEec--CCc--cccC---
Q psy13372 20 AANYLDKYRVAAEL-----GFRYIESWFPPV------------GVTLEQLVAAQTRHGLKQVLINT--EVD--ENFG--- 75 (273)
Q Consensus 20 ~~~~~~~l~~~~~~-----G~~~vEl~~~~~------------~~~~~~~~~~l~~~gL~i~~~~~--~~~--~~~~--- 75 (273)
..+++|.++-+.+. |-..|.++.+|+ ..+.+.+++..+++||.+- ++. +.. +..|
T Consensus 69 aR~~~El~~D~~~~~~L~pg~~~vnLH~~y~~~~~~vdrd~~~p~~f~~w~~~Ak~~GlglD-fNpn~Fsh~~~k~G~SL 147 (419)
T PRK01076 69 ARNADELRADLEKALSLIPGKHRLNLHAIYLESDTPVDRDEIEPEHFKNWVEWAKENGLGLD-FNPTCFSHPLSADGFTL 147 (419)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCceeeecccccCCCcccccccCcccHHHHHHHHHHcCCCcC-cCcccCCCccccCCCcc
Confidence 35677776655443 678888887754 2456899999999999987 664 221 2222
Q ss_pred CCCCchhHHHHHHHHHHHHHHHH----HcCCCe-EEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHH-hhCCcEEEE
Q psy13372 76 YAAVKGKESEFRASLEKTIQYAC----ALNIPA-IHIMSGKTESSRTQPIASEDPYTTLKENLIYACAEL-ERHSLTALI 149 (273)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~a~----~lG~~~-i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a-~~~gv~i~l 149 (273)
.+++++.|+..++..+++++++. ++|.++ +.++.+.-..+ .|.+.-...+++.++|.++-... ...+++.++
T Consensus 148 s~pD~~iR~fwI~H~~~c~~I~~~~g~~lGs~~~~niWipDG~kd--~P~q~~~~r~Rl~eSLdeI~a~~~d~~~~~~~v 225 (419)
T PRK01076 148 SHPDPEIRQFWIEHCKASRRISAYFGEELGTPCVMNIWIPDGMKD--IPVDRLAPRQRLLESLDEIISEKLDPAHHIDAV 225 (419)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeEEeCCCCCC--CcccccCHHHHHHHHHHHHHHhhcCcccceeee
Confidence 24689999999999999999999 999999 68775432111 12223367888999998886554 345788888
Q ss_pred ccCCCCCCCC---cccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHH-Hh--cCCcceeEEeccCC---C
Q psy13372 150 EPVNQHSVPG---YYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTF-GA--CRDLIGHVQIAQAP---D 220 (273)
Q Consensus 150 E~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i-~~--~~~~i~~vHi~d~~---~ 220 (273)
|---.. ++ +-..+.+=..-++ -. .+.-+|+|+||..- +.++.+-+ .. ..+++ .+|+++.. +
T Consensus 226 E~KlFg--~g~EsYtvgs~df~~~ya---~~---~~~~~llD~GH~hP-tenIe~kvsA~Ll~~~~L-~lH~sr~~rwDs 295 (419)
T PRK01076 226 ESKLFG--IGAESYTVGSHEFYMGYA---TS---RQTALCLDAGHFHP-TEVISDKISAAMLYVPRL-LLHVSRPVRWDS 295 (419)
T ss_pred eeeccc--cccceeeccchHHHHHHH---HH---cCCEEEEeCCCCCC-CCCHHHHHHHHHhcCCce-eEecCCCccccc
Confidence 863221 22 2234444455555 33 34899999999975 67777777 33 35788 99999741 1
Q ss_pred CCCCCCCCcccHHHHHHHHHHcCCCc
Q psy13372 221 RQEPHARGEIDYAYVFELLAREGYEG 246 (273)
Q Consensus 221 ~~~~g~~G~id~~~i~~~L~~~gy~g 246 (273)
-+..|. -+ ....|+..|-+.++..
T Consensus 296 Dhvv~~-~D-el~~I~~ElVr~~~l~ 319 (419)
T PRK01076 296 DHVVLL-DD-ETQAIASEIVRHDLLD 319 (419)
T ss_pred cceeec-hH-HHHHHHHHHHhcCccc
Confidence 123333 22 4666777777777543
No 38
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=98.33 E-value=3.7e-07 Score=57.71 Aligned_cols=41 Identities=24% Similarity=0.583 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHcCCCceEEEeeecC-C----ChHHHHHHHHHhhccc
Q psy13372 231 DYAYVFELLAREGYEGYVGLEYKPQ-G----NTKEGLEEFLKTFDLK 272 (273)
Q Consensus 231 d~~~i~~~L~~~gy~g~~~lE~~~~-~----~~~~~~~~~~~~~~~~ 272 (273)
||+.++++|++.||+|++++|++.. . ...++++ |||+..++
T Consensus 1 dw~~i~~~L~~~GYdG~~siE~ED~~~~~~~G~~~a~~-~lr~~l~~ 46 (55)
T PF07582_consen 1 DWKRIFSALREIGYDGWLSIEHEDALMDPEEGAREAAA-FLRKLLIR 46 (55)
T ss_dssp -HHHHHHHHHHTT--SEEEE---STTTSHHHHHHHHHH-HHHTT---
T ss_pred CHHHHHHHHHHcCCCceEEEEeecCCCCHHHHHHHHHH-HHHHhcCC
Confidence 7999999999999999999999842 2 4678888 99887654
No 39
>PRK05409 hypothetical protein; Provisional
Probab=98.19 E-value=0.00011 Score=62.75 Aligned_cols=200 Identities=17% Similarity=0.074 Sum_probs=118.2
Q ss_pred CCeEEecCC-C---CCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCC
Q psy13372 35 FRYIESWFP-P---VGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSG 110 (273)
Q Consensus 35 ~~~vEl~~~-~---~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G 110 (273)
.|.+|+... + ++.....+.++.+.+.+.+..++...+ . .++-. .+++++.-+++.+++...+.=|.+
T Consensus 28 vdf~Ev~~EN~~~~gg~~~~~L~~i~e~~Pv~~HGv~LslG----s-~~~ld----~~~L~~l~~l~~~~~~~~vSeHL~ 98 (281)
T PRK05409 28 VDFFEVHPENYMGAGGPPLAQLDAIRERYPLSLHGVSLSLG----G-AAPLD----KDHLKRLKALADRYQPPLVSEHLA 98 (281)
T ss_pred CCEEEECcccccCcCCchHHHHHHHHhcCCEEEcccccccC----C-CCCCC----HHHHHHHHHHHHHHCCCEEEeeee
Confidence 689999853 2 224556666666665554443333322 1 12211 246677777888899998876654
Q ss_pred CCCCC--CC--CC-CCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCC-CCcccCCHHHHHHHHHHH-hhcCCCce
Q psy13372 111 KTESS--RT--QP-IASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSV-PGYYLSSFRVAERLIREL-RAHGISNV 183 (273)
Q Consensus 111 ~~~~~--~~--~~-~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~-~~~~~~~~~~~~~li~~~-~~~~~~~~ 183 (273)
....+ .. -| +.+++..+.++++++++-+. .|.++.+||.+.+.. +. .+..+ .+++++| ++ .++
T Consensus 99 ~~~~g~~~~dLlPlP~T~e~l~~v~~ri~~vQd~---lgrplllEN~s~yl~~~~---~~m~E-~eFl~el~~r---tgc 168 (281)
T PRK05409 99 WSSDGGHLYDLLPLPYTEEALDHVAERIRQVQDI---LGRPLLLENPSSYLAFPD---SEMSE-WEFLNELAER---TGC 168 (281)
T ss_pred eecCCCccCccCCCCCCHHHHHHHHHHHHHHHHH---hCCCeEEeccccccCCCC---CCCCH-HHHHHHHHHh---cCC
Confidence 32111 00 12 23778888888887776665 567999999765421 11 12223 3344221 44 569
Q ss_pred eEeeecccccc----cCCChHHHHHhcC-CcceeEEeccC-CCCC--CCCCCCcc----cHHHHHHHHHHcCCCceEEEe
Q psy13372 184 QLQFDFFNAQR----ICGDLTHTFGACR-DLIGHVQIAQA-PDRQ--EPHARGEI----DYAYVFELLAREGYEGYVGLE 251 (273)
Q Consensus 184 g~~~D~~h~~~----~~~~~~~~i~~~~-~~i~~vHi~d~-~~~~--~~g~~G~i----d~~~i~~~L~~~gy~g~~~lE 251 (273)
|+++|+.|.+. .|-|+.+++..+. +++..+|++.. .... ...+.|.- -|.-+-..++..|- .+..+|
T Consensus 169 ~lLLDvnNvyvna~N~g~dp~~~L~~lP~~rV~eiHlAG~~~~~~~~~iDtH~~~V~~~Vw~L~~~~l~~~g~-~ptLlE 247 (281)
T PRK05409 169 GLLLDVNNVYVNAVNHGFDPLAYLDALPLERVAYIHLAGHDSEGGDLLIDTHGAPVIDPVWDLYEYAIARHGP-VPTLLE 247 (281)
T ss_pred CEEEEecceeeehhcCCCCHHHHHHhCCHHHeEEEEccCCCccCCCeeEeCCCCCCCHHHHHHHHHHHHHhCC-CCEEEe
Confidence 99999999864 3668999999885 79999999964 1111 11111111 25555555655664 367799
Q ss_pred eec
Q psy13372 252 YKP 254 (273)
Q Consensus 252 ~~~ 254 (273)
+..
T Consensus 248 ~D~ 250 (281)
T PRK05409 248 RDF 250 (281)
T ss_pred cCC
Confidence 874
No 40
>PF05114 DUF692: Protein of unknown function (DUF692); InterPro: IPR007801 The proteins in this entry are functionally uncharacterised.; PDB: 3BWW_A.
Probab=98.09 E-value=1.4e-05 Score=68.15 Aligned_cols=211 Identities=18% Similarity=0.108 Sum_probs=95.2
Q ss_pred HHHHHHHHHcCCCeEEecCC----CCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFP----PVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACA 99 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~----~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 99 (273)
++.++....-..|.+|+... .++...+.+.++.+. ..++.+++.. ..|. .++-. .+++++.-+++.+
T Consensus 15 ~~~l~~~~~~~vd~~Ev~~EN~~~~gg~~~~~L~~i~~~--~Pv~~HGv~l--slG~-~~~~d----~~~L~~l~~l~~~ 85 (274)
T PF05114_consen 15 EDLLAHAERPAVDFLEVHPENYFGAGGRPREQLEAIRER--YPVSLHGVGL--SLGS-ADPLD----KDYLRRLKALADR 85 (274)
T ss_dssp HHHHH-SSSSSS--EEE-HHHHHT--HHHHHHHHHHTTT--S-EEEB-S-----TT--SS-------HHHHHHHHHHHHH
T ss_pred HHHHhccCCCCCCEEEEccccccCCCCchHHHHHHHHhC--CCEEEecccc--ccCC-CCCCC----HHHHHHHHHHHHH
Confidence 44443334567999999853 121233445554443 5666555431 1221 12211 3577788888889
Q ss_pred cCCCeEEecCCCCCCC------CCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCC-CCcccCCHHHHHHHH
Q psy13372 100 LNIPAIHIMSGKTESS------RTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSV-PGYYLSSFRVAERLI 172 (273)
Q Consensus 100 lG~~~i~~~~G~~~~~------~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~-~~~~~~~~~~~~~li 172 (273)
++...+.=|.+....+ .+.| .+++..+.++++++++-+.. |.++.+||.+.+.. ++.-+.-.+=..+++
T Consensus 86 ~~~~~vSeHL~~~~~~g~~~dLlP~p-~t~e~l~~~~~~i~~vQ~~l---~~plllEN~s~y~~~~~~~m~E~eFl~~l~ 161 (274)
T PF05114_consen 86 LNPPWVSEHLCWSSVGGHLYDLLPLP-YTEEALDHVVDRIRRVQDAL---GRPLLLENPSSYLPFPGSEMSEPEFLRELV 161 (274)
T ss_dssp TT----EE-S--------------B----HHHHHHHHHHHHHHHHHH---TS--EEE----S-B-TT-SS-HHHHHHHHH
T ss_pred HCCCEEEeEEEEecCCCccCCcCCCC-CCHHHHHHHHHHHHHHHHHh---CCCeEEeCchhhcCCCcCCCCHHHHHHHHH
Confidence 9999887765443211 0113 37788888888888877776 68999999765421 111122222223444
Q ss_pred HHHhhcCCCceeEeeecccccc----cCCChHHHHHhc-CCcceeEEeccCCC-CC--CCCCCCc----ccHHHHHHHHH
Q psy13372 173 RELRAHGISNVQLQFDFFNAQR----ICGDLTHTFGAC-RDLIGHVQIAQAPD-RQ--EPHARGE----IDYAYVFELLA 240 (273)
Q Consensus 173 ~~~~~~~~~~~g~~~D~~h~~~----~~~~~~~~i~~~-~~~i~~vHi~d~~~-~~--~~g~~G~----id~~~i~~~L~ 240 (273)
++. ++|+++|+.|.+. .|.|+.+++..+ .+++..+|++.... .. ...+.+. --|.-+-..++
T Consensus 162 ---~rt---gcglLLDinNlyvna~N~g~dp~~~l~~lP~~rV~eiHlAG~~~~~~~~~iDtH~~~V~~~Vw~Ll~~~l~ 235 (274)
T PF05114_consen 162 ---ERT---GCGLLLDINNLYVNAVNHGFDPYEYLDALPLERVVEIHLAGHSEDEDGLLIDTHSAPVPEEVWDLLEEVLR 235 (274)
T ss_dssp ---HHH---T-EEEEEHHHHHHHHHHH---HHHHHHHS-GGGEEEEEE---------------------HHHHHHHHHHT
T ss_pred ---HHh---CCCEEEEhhhhhhhhhcCCCCHHHHHHhCCHHHhEEEEccCCCCCCCCeeEeCCCCCCCHHHHHHHHHHHH
Confidence 665 5999999999853 477999999998 47999999996321 11 1111111 12555556666
Q ss_pred HcCCCceEEEeeec
Q psy13372 241 REGYEGYVGLEYKP 254 (273)
Q Consensus 241 ~~gy~g~~~lE~~~ 254 (273)
+.|- .++++|+..
T Consensus 236 r~~~-~~~llE~D~ 248 (274)
T PF05114_consen 236 RFGP-RPTLLERDN 248 (274)
T ss_dssp T-SS---EEE----
T ss_pred HhCC-CcEEEecCC
Confidence 6665 468899873
No 41
>COG2115 XylA Xylose isomerase [Carbohydrate transport and metabolism]
Probab=98.03 E-value=0.00074 Score=57.82 Aligned_cols=190 Identities=13% Similarity=0.124 Sum_probs=130.6
Q ss_pred HHHHHHHHHcCCCeEEecC----CCCCCC-----------HHHHHHHHHHcCCeeE--EEecCCc--ccc--CCCCCchh
Q psy13372 24 LDKYRVAAELGFRYIESWF----PPVGVT-----------LEQLVAAQTRHGLKQV--LINTEVD--ENF--GYAAVKGK 82 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~----~~~~~~-----------~~~~~~~l~~~gL~i~--~~~~~~~--~~~--~~~~~~~~ 82 (273)
+-+++.+.++|....=++- |.+ .+ ++.+.+..++.|+++. ..+++.. +-. ..+++|++
T Consensus 85 d~aFEff~kL~vpyyCFHD~DvaPeG-~~l~E~~~nl~~ivd~~~~kq~~sgvKLLWgTAN~FsnpRym~GaATnp~~dV 163 (438)
T COG2115 85 DVAFEFFEKLGVPYYCFHDVDVAPEG-ASLKEYYNNLDEIVDVLAGKQKESGVKLLWGTANLFTNPRYMAGAATNPDPDV 163 (438)
T ss_pred HHHHHHHHHhCCCeEeecccccCCCc-ccHHHHHHHHHHHHHHHHHHHHhhCceeeecccccccCccccccccCCCChhH
Confidence 3445666777755544441 222 11 2556666778888875 2222221 111 24578999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCc--EEEEccCCCCCCCCc
Q psy13372 83 ESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSL--TALIEPVNQHSVPGY 160 (273)
Q Consensus 83 ~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv--~i~lE~~~~~~~~~~ 160 (273)
..-+....+.++++.++||....+++.|+-+.+.--.-+....++++.+.+.-+++++++-|. ++.|||-+..+....
T Consensus 164 Fa~aAaqVk~~~~~tk~LggENYVlWGGREGYETLLNTDl~~E~d~l~RF~~mvVeyk~kigf~gt~LIEPKPqEPtkHQ 243 (438)
T COG2115 164 FAYAAAQVKTAMEATKKLGGENYVLWGGREGYETLLNTDLKRELEQLGRFMQMVVEYKHKIGFKGTFLIEPKPQEPTKHQ 243 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCcceEEecCcccHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCcceEEecCCCCCCcccc
Confidence 999999999999999999999999997765432000001456678888999999999999886 599999776544455
Q ss_pred ccCCHHHHHHHHHHHhhcCCC-ceeEeeecccccccCCChHHHHHhc--CCcceeEEecc
Q psy13372 161 YLSSFRVAERLIRELRAHGIS-NVQLQFDFFNAQRICGDLTHTFGAC--RDLIGHVQIAQ 217 (273)
Q Consensus 161 ~~~~~~~~~~li~~~~~~~~~-~~g~~~D~~h~~~~~~~~~~~i~~~--~~~i~~vHi~d 217 (273)
+--++.....++ +..+-. .+++++..+|+...|-.....+... ..-.++|....
T Consensus 244 YDyDvATvy~FL---k~~gLek~~K~NiEanHA~LaGHsFeHEl~~A~~lgifGSiDaNr 300 (438)
T COG2115 244 YDYDVATVYGFL---KQFGLEKEFKLNIEANHATLAGHSFEHELATARALGIFGSIDANR 300 (438)
T ss_pred ccchHHHHHHHH---HHcCchhheeeecccCceecccccHHHHHHHHHHhccccccccCC
Confidence 666788888899 888765 4999999999999988777666543 34455555544
No 42
>COG4294 Uve UV damage repair endonuclease [DNA replication, recombination, and repair]
Probab=97.89 E-value=0.001 Score=56.23 Aligned_cols=217 Identities=13% Similarity=0.079 Sum_probs=138.6
Q ss_pred CHHHHHHHHHHcCCCeEEecC---CCC--------------CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWF---PPV--------------GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKES 84 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~---~~~--------------~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~ 84 (273)
++-..++++...|+.-.-+.. |.. ....+++.++.+++++.+..+ |..+-.-.++.+++.+
T Consensus 74 ~l~r~l~~~~~~~I~lyRlSSsLfPla~h~~~~g~~~l~~~~~eL~evGe~a~~~~~Rl~~H--PdQf~vl~S~~~eV~~ 151 (347)
T COG4294 74 NLIRLLEYNHAHGIRLYRLSSSLFPLADHADTKGWYTLEFIQSELEEVGELANKHNHRLTMH--PDQFTVLNSPREEVVD 151 (347)
T ss_pred HHHHHHHHHHhcCceEEEecccccccccCccchhHHHHHHHHHHHHHHHHHHHhhCceeeec--CCceEEecCCchHHHH
Confidence 456677788888988887773 321 023478999999999999865 2221221234588999
Q ss_pred HHHHHHHHHHHHHHHcCCC---eEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcc
Q psy13372 85 EFRASLEKTIQYACALNIP---AIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYY 161 (273)
Q Consensus 85 ~~~~~~~~~i~~a~~lG~~---~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~ 161 (273)
.++..+...-++...||.. ..++|.|+.-.+ .+...+++++.+.+|-+-.+. ++.+||- ..
T Consensus 152 ssir~layH~r~l~~mgl~~Rs~~~lhlgg~~gG------K~~~~eqf~kni~~LP~~vks---Rl~LEND-------d~ 215 (347)
T COG4294 152 SSIRDLAYHYRILDGMGLAERSVWNLHLGGTHGG------KKERLEQFIKNIQRLPDSVKS---RLTLEND-------DK 215 (347)
T ss_pred HHHHHHHHHHHHHhhcCCCcCCceEEEeccccCC------chhHHHHHHHHHhhcCHHHHH---hheeecc-------cc
Confidence 9999999999999999987 457777765444 567788888888887766664 7999993 24
Q ss_pred cCCHHHHHHHHHHHhhcCCCceeEeeecccccccC-------CChHHHHHhcC------CcceeEEeccCC-CCCCCCCC
Q psy13372 162 LSSFRVAERLIRELRAHGISNVQLQFDFFNAQRIC-------GDLTHTFGACR------DLIGHVQIAQAP-DRQEPHAR 227 (273)
Q Consensus 162 ~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~-------~~~~~~i~~~~------~~i~~vHi~d~~-~~~~~g~~ 227 (273)
..|.++.+.++ ++.+ +=+.||..|..... .++..++.+.. +.-.-||++... +...++..
T Consensus 216 sYs~eelL~lC---ek~~---iPlVfD~HHh~v~~~l~~~~~~sl~~~~~r~r~TW~~~~lq~kvHlSs~~~~~~dr~H~ 289 (347)
T COG4294 216 SYSTEELLPLC---EKLN---IPLVFDAHHHNVHPGLDREDSPSLMELIPRIRETWTRPGLQQKVHLSSPASGTADRRHS 289 (347)
T ss_pred cccHHHHHHHH---HHhC---CCEEEechhhhccCCCcccCChhHHHHHHHHHHhccCCCCceeEEecCCCCccccchhh
Confidence 56899999999 9875 55889998875432 23444444431 223489999631 11112111
Q ss_pred CcccHHHHHHHHHHcCCCceEEEeeecCCChHHHHH
Q psy13372 228 GEIDYAYVFELLAREGYEGYVGLEYKPQGNTKEGLE 263 (273)
Q Consensus 228 G~id~~~i~~~L~~~gy~g~~~lE~~~~~~~~~~~~ 263 (273)
.-|+-..++..+.+.+-.+ +-+|.+..+.+...+.
T Consensus 290 ~~i~adr~~p~~~~~~~w~-i~veak~KekaiA~Lr 324 (347)
T COG4294 290 DYIHADRVFPFLYRDPPWD-IEVEAKAKEKAIALLR 324 (347)
T ss_pred hhhccccccCCccccCCce-eeeehhhhHHHHHHHH
Confidence 2333344455555443222 4455544444444444
No 43
>COG4952 Predicted sugar isomerase [Cell envelope biogenesis, outer membrane]
Probab=97.75 E-value=0.0013 Score=55.42 Aligned_cols=205 Identities=12% Similarity=0.078 Sum_probs=126.3
Q ss_pred CCeEEecCCCCC-CCHHHHHHHHHHcCCeeEEEec--CCc-------cccC-C-CCCchhHHHHHHHHHHHHHHHHHcCC
Q psy13372 35 FRYIESWFPPVG-VTLEQLVAAQTRHGLKQVLINT--EVD-------ENFG-Y-AAVKGKESEFRASLEKTIQYACALNI 102 (273)
Q Consensus 35 ~~~vEl~~~~~~-~~~~~~~~~l~~~gL~i~~~~~--~~~-------~~~~-~-~~~~~~~~~~~~~~~~~i~~a~~lG~ 102 (273)
...|.++.|++. ++..++++...+.||.+-.++. +.+ +.+| + .++...|.++++....++++++.+|.
T Consensus 94 tP~VsLHIPWDKved~~~Lke~a~~~GL~fdAmNsNtFsDa~~q~~sYKyGSLsh~d~~tR~qAieHnlECveIg~~~GS 173 (430)
T COG4952 94 TPSVSLHIPWDKVEDPERLKEFASALGLGFDAMNSNTFSDAPGQGHSYKYGSLSHTDAATRRQAIEHNLECVEIGKALGS 173 (430)
T ss_pred CCceeeecChhcccCHHHHHHHHHhcCCCccccCcccccCCcccccccccccccCccHHHHHHHHHhhHHHHHHHHhhCc
Confidence 668899999873 5889999999999999988765 221 2222 1 24567899999999999999999999
Q ss_pred CeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCC-CCcccCCHHHHHHHHHHHhhcCCC
Q psy13372 103 PAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSV-PGYYLSSFRVAERLIRELRAHGIS 181 (273)
Q Consensus 103 ~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~ 181 (273)
+.+.++.|.-+ +.+-+......+++..++++.+-+- -..+.++..|---..+. -.+.+.+...---+. ++++ +
T Consensus 174 KaltvWvgDGs-nfPGQ~nF~r~feRyl~sm~~iY~~-lPaDw~lf~EhKmfEPAFYsTvvqDWGtnYLia---~~LG-e 247 (430)
T COG4952 174 KALTVWVGDGS-NFPGQSNFTRAFERYLDSMKAIYAA-LPADWRLFTEHKMFEPAFYSTVVQDWGTNYLIA---EELG-E 247 (430)
T ss_pred ceEEEEeccCC-CCCCchhHHHHHHHHHHHHHHHHHh-CchhhhHHHhhhcccchhhhcccccccHHHHHH---HHhc-c
Confidence 99999987532 1100001233444444444443221 12344555543111000 122344444445566 6666 5
Q ss_pred ceeEeeecccccccCCChHHHHHhcC--CcceeEEeccCCCC-CCCCCCCcccHHHH---HHHHHHcCCCce
Q psy13372 182 NVQLQFDFFNAQRICGDLTHTFGACR--DLIGHVQIAQAPDR-QEPHARGEIDYAYV---FELLAREGYEGY 247 (273)
Q Consensus 182 ~~g~~~D~~h~~~~~~~~~~~i~~~~--~~i~~vHi~d~~~~-~~~g~~G~id~~~i---~~~L~~~gy~g~ 247 (273)
..-.+.|.||... +.+++-.+.++. ..++-+|+.|.... ..... |.||.=++ |..|-...|+|.
T Consensus 248 rA~cLVDLGHHap-ntNIEmIVarLiqfkKLGGFHfNdsKYgDDDLd~-gSI~PYrlFLvFnElVdAe~r~~ 317 (430)
T COG4952 248 RAFCLVDLGHHAP-NTNIEMIVARLIQFKKLGGFHFNDSKYGDDDLDA-GSIDPYRLFLVFNELVDAEYRGA 317 (430)
T ss_pred ceEEEEecCCCCC-CCCHHHHHHHHHhhccccceecCccccccccccc-cccCcchhhhhHHHHHhhhhcCc
Confidence 5667789999853 667776666663 57899999986322 23445 77774433 455555556553
No 44
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=97.72 E-value=0.0028 Score=53.17 Aligned_cols=196 Identities=14% Similarity=0.072 Sum_probs=116.1
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCC-CCCHHHHHHHHHHcC-CeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPV-GVTLEQLVAAQTRHG-LKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACA 99 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~l~~~g-L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 99 (273)
...+.++.+.++|++.||+.++.. +.+.+.+++..+... -++.++... . .+.++..++.+..
T Consensus 15 ~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------~-------~~~i~~~~~~~~~ 78 (237)
T PF00682_consen 15 EKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPNARLQALCRA---------N-------EEDIERAVEAAKE 78 (237)
T ss_dssp HHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHSSEEEEEEES---------C-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcccccceeeee---------h-------HHHHHHHHHhhHh
Confidence 456667788999999999996642 233344444433322 333333211 1 2346667778888
Q ss_pred cCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcC
Q psy13372 100 LNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHG 179 (273)
Q Consensus 100 lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 179 (273)
.|+..+++....-..... .......+...+.+.++++++++.|..+.+=+. ...-.+++.+.++++.+.+.+
T Consensus 79 ~g~~~i~i~~~~s~~~~~--~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~g 150 (237)
T PF00682_consen 79 AGIDIIRIFISVSDLHIR--KNLNKSREEALERIEEAVKYAKELGYEVAFGCE------DASRTDPEELLELAEALAEAG 150 (237)
T ss_dssp TTSSEEEEEEETSHHHHH--HHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEET------TTGGSSHHHHHHHHHHHHHHT
T ss_pred ccCCEEEecCcccHHHHH--HhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcc------ccccccHHHHHHHHHHHHHcC
Confidence 999999886432210000 002345678889999999999999977655442 224567888888886667666
Q ss_pred CCceeEeeecccccccC--CChHHHHHhcCC-cceeEEeccCCCC--------------------CC--CCCCCcccHHH
Q psy13372 180 ISNVQLQFDFFNAQRIC--GDLTHTFGACRD-LIGHVQIAQAPDR--------------------QE--PHARGEIDYAY 234 (273)
Q Consensus 180 ~~~~g~~~D~~h~~~~~--~~~~~~i~~~~~-~i~~vHi~d~~~~--------------------~~--~g~~G~id~~~ 234 (273)
...+ ..-|+.-..... .++...+++..+ --..+|.+|+.+. .. -+. |..+...
T Consensus 151 ~~~i-~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~GlG~~~-Gn~~le~ 228 (237)
T PF00682_consen 151 ADII-YLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGLGERA-GNAPLEE 228 (237)
T ss_dssp -SEE-EEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGGSSTT-SB-BHHH
T ss_pred CeEE-EeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCccCCCCC-CCccHHH
Confidence 4445 445664433221 123444444444 5567899986432 01 134 8888888
Q ss_pred HHHHHHHcC
Q psy13372 235 VFELLAREG 243 (273)
Q Consensus 235 i~~~L~~~g 243 (273)
++..|+..|
T Consensus 229 lv~~L~~~g 237 (237)
T PF00682_consen 229 LVAALERMG 237 (237)
T ss_dssp HHHHHHHT-
T ss_pred HHHHHhhcC
Confidence 888887765
No 45
>COG3220 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.72 E-value=0.0038 Score=51.92 Aligned_cols=201 Identities=13% Similarity=0.024 Sum_probs=118.6
Q ss_pred cCCCeEEecCC-C---CCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCCCeEEec
Q psy13372 33 LGFRYIESWFP-P---VGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIPAIHIM 108 (273)
Q Consensus 33 ~G~~~vEl~~~-~---~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~ 108 (273)
--++.||.... | ++....++.+..+...+.+..+++..++..++ + .+.++++-.++++.....+.-|
T Consensus 25 ~~i~fiEv~pEN~~~~GG~~~~~f~~~rer~Pv~lHGlslslgg~~~l--d-------~~~l~~~k~li~r~~~~~~SeH 95 (282)
T COG3220 25 VKIDFIEVAPENWMGAGGPARAAFDAVRERLPVALHGLSLSLGGQAPL--D-------LDLLRRIKALIKRYDPAFFSEH 95 (282)
T ss_pred cceeEEEecchhhhhccChHHHHHHHHHhcCCeeeeeeeeccCCCCCC--C-------HHHHHHHHHHHHHhCchhhhhh
Confidence 45888888732 1 22334566666666666666555433322111 2 2344455555555566555444
Q ss_pred CCC---CCC--C-CCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhc-CCC
Q psy13372 109 SGK---TES--S-RTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAH-GIS 181 (273)
Q Consensus 109 ~G~---~~~--~-~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~ 181 (273)
.-. .+. + -+-|. ++...+.++++++++-+.. +.+|.+||.+.+.+ ....+..+ .+++ .++ ...
T Consensus 96 L~~~~~~g~~yDLlPlP~-teea~~~va~~I~~~Qd~L---erplllEN~s~Y~~--~~~~~m~E-~~FL---~al~~~~ 165 (282)
T COG3220 96 LSYCTDDGHLYDLLPLPF-TEEAVDHVAARIREVQDVL---ERPLLLENPSYYLH--SPCSAMNE-VEFL---NALAREA 165 (282)
T ss_pred eeeeccCCeeeccccCcc-cHHHHHHHHHHHHHHHHHh---cCceeecCcccccc--cccccccH-HHHH---HHHHHhc
Confidence 321 111 1 01133 7888888888887776654 57999999776533 11223333 3333 222 235
Q ss_pred ceeEeeeccccccc----CCChHHHHHhcC-CcceeEEeccCCCC-C---CCCCCCc----ccHHHHHHHHHHcCCCceE
Q psy13372 182 NVQLQFDFFNAQRI----CGDLTHTFGACR-DLIGHVQIAQAPDR-Q---EPHARGE----IDYAYVFELLAREGYEGYV 248 (273)
Q Consensus 182 ~~g~~~D~~h~~~~----~~~~~~~i~~~~-~~i~~vHi~d~~~~-~---~~g~~G~----id~~~i~~~L~~~gy~g~~ 248 (273)
++|+.+|+.|...+ |-|+.+++..+. .|+..+|+...... . .+.+.|. ..|+-+-.++...| ..+.
T Consensus 166 ~CglLLDvNNiyVna~NHG~d~~~yL~~~p~~rV~eIHlAGh~~~~~G~LlIDTHg~pV~~~VW~Ll~~a~a~~g-p~pt 244 (282)
T COG3220 166 GCGLLLDVNNIYVNAVNHGFDPEEYLAALPVERVGEIHLAGHDEEEEGELLIDTHGAPVKDEVWDLLEAAYARLG-PRPT 244 (282)
T ss_pred CCCEEEeecceEEeccccCCCHHHHHhcCCHHHheeeeeccCCcCcCCceeeecCCCccchhHHHHHHHHHHhcC-CCCe
Confidence 69999999998643 568999999885 68999999964211 1 1122233 35887778888888 4578
Q ss_pred EEeee
Q psy13372 249 GLEYK 253 (273)
Q Consensus 249 ~lE~~ 253 (273)
.+|+.
T Consensus 245 llErD 249 (282)
T COG3220 245 LLERD 249 (282)
T ss_pred eeeec
Confidence 89976
No 46
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=97.69 E-value=0.0058 Score=55.04 Aligned_cols=194 Identities=16% Similarity=0.127 Sum_probs=113.7
Q ss_pred HHHHHHHHHcCCCeEEecCCCC-CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCC
Q psy13372 24 LDKYRVAAELGFRYIESWFPPV-GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNI 102 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~ 102 (273)
.+.++.+.++|++.||+.+|.- +.+.+.++. +.+.++... +.++. . . ..+-++.|...|+
T Consensus 29 ~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~-i~~~~~~~~-i~~~~-----r-~-----------~~~di~~a~~~g~ 89 (378)
T PRK11858 29 LAIARMLDEIGVDQIEAGFPAVSEDEKEAIKA-IAKLGLNAS-ILALN-----R-A-----------VKSDIDASIDCGV 89 (378)
T ss_pred HHHHHHHHHhCCCEEEEeCCCcChHHHHHHHH-HHhcCCCeE-EEEEc-----c-c-----------CHHHHHHHHhCCc
Confidence 4445667888999999998843 122234444 445676633 22211 0 0 1123666677899
Q ss_pred CeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCCCc
Q psy13372 103 PAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGISN 182 (273)
Q Consensus 103 ~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 182 (273)
+.|++....-..... .......++..+.+.+++++|++.|..+.+=+. +..-.+++.+.++++.+.+.+...
T Consensus 90 ~~i~i~~~~Sd~h~~--~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~e------d~~r~~~~~l~~~~~~~~~~Ga~~ 161 (378)
T PRK11858 90 DAVHIFIATSDIHIK--HKLKKTREEVLERMVEAVEYAKDHGLYVSFSAE------DASRTDLDFLIEFAKAAEEAGADR 161 (378)
T ss_pred CEEEEEEcCCHHHHH--HHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEec------cCCCCCHHHHHHHHHHHHhCCCCE
Confidence 998886432211000 002234677788888999999999987665432 223457888888886666666555
Q ss_pred eeEeeecccccccCCChHHHHHhcC---CcceeEEeccCCCC--------------------CCCCC-CCcccHHHHHHH
Q psy13372 183 VQLQFDFFNAQRICGDLTHTFGACR---DLIGHVQIAQAPDR--------------------QEPHA-RGEIDYAYVFEL 238 (273)
Q Consensus 183 ~g~~~D~~h~~~~~~~~~~~i~~~~---~~i~~vHi~d~~~~--------------------~~~g~-~G~id~~~i~~~ 238 (273)
+.++ |+.-.... ..+.+.++.+. +--..+|.+|..+. ...|. .|..+...++..
T Consensus 162 I~l~-DT~G~~~P-~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlGeraGNa~lE~vv~~ 239 (378)
T PRK11858 162 VRFC-DTVGILDP-FTMYELVKELVEAVDIPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNGLGERAGNAALEEVVMA 239 (378)
T ss_pred EEEe-ccCCCCCH-HHHHHHHHHHHHhcCCeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeeccccccccCccHHHHHHH
Confidence 5555 66433222 12333343332 34567898886331 12332 299999999999
Q ss_pred HH-HcCCCc
Q psy13372 239 LA-REGYEG 246 (273)
Q Consensus 239 L~-~~gy~g 246 (273)
|. ..|++-
T Consensus 240 L~~~~g~~~ 248 (378)
T PRK11858 240 LKYLYGIDL 248 (378)
T ss_pred HHHHhCCCC
Confidence 98 467763
No 47
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=97.51 E-value=0.029 Score=47.67 Aligned_cols=192 Identities=13% Similarity=0.048 Sum_probs=113.0
Q ss_pred HHHHHHHHHHcCCCeEEecCCCCC------CCHHHHHHHHHHcC--CeeEEEecCCccccCCCCCchhHHHHHHHHHHHH
Q psy13372 23 YLDKYRVAAELGFRYIESWFPPVG------VTLEQLVAAQTRHG--LKQVLINTEVDENFGYAAVKGKESEFRASLEKTI 94 (273)
Q Consensus 23 ~~~~l~~~~~~G~~~vEl~~~~~~------~~~~~~~~~l~~~g--L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (273)
..+.++.+.++|++.||+.++... .+..++.+.+.+.+ ..+..+.. .. .+.+
T Consensus 21 ~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~---------~~-----------~~~i 80 (265)
T cd03174 21 KLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVR---------NR-----------EKGI 80 (265)
T ss_pred HHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEcc---------Cc-----------hhhH
Confidence 345566777889999999987432 34455555555555 55544321 00 4567
Q ss_pred HHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEE--EEccCCCCCCCCcccCCHHHHHHHH
Q psy13372 95 QYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTA--LIEPVNQHSVPGYYLSSFRVAERLI 172 (273)
Q Consensus 95 ~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i--~lE~~~~~~~~~~~~~~~~~~~~li 172 (273)
+.+...|++.|++.......... .......+...+...+..+.++++|+.+ .+|.... ...+++...+++
T Consensus 81 ~~a~~~g~~~i~i~~~~s~~~~~--~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~------~~~~~~~l~~~~ 152 (265)
T cd03174 81 ERALEAGVDEVRIFDSASETHSR--KNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFG------CKTDPEYVLEVA 152 (265)
T ss_pred HHHHhCCcCEEEEEEecCHHHHH--HHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecC------CCCCHHHHHHHH
Confidence 77788899999886432210000 0011234456677777888899999764 4444221 136778888888
Q ss_pred HHHhhcCCCceeEeeecccccccCCChHHH---HHhcCC-cceeEEeccCCCC--------------------CCC--CC
Q psy13372 173 RELRAHGISNVQLQFDFFNAQRICGDLTHT---FGACRD-LIGHVQIAQAPDR--------------------QEP--HA 226 (273)
Q Consensus 173 ~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~---i~~~~~-~i~~vHi~d~~~~--------------------~~~--g~ 226 (273)
+.+.+.+...+. ..|+.-.... .++.+. +++..+ -...+|.+|+.+. ... +.
T Consensus 153 ~~~~~~g~~~i~-l~Dt~G~~~P-~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G~~~ 230 (265)
T cd03174 153 KALEEAGADEIS-LKDTVGLATP-EEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLGERA 230 (265)
T ss_pred HHHHHcCCCEEE-echhcCCcCH-HHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEeccccccccc
Confidence 666777644454 3465332221 223333 333333 5567999986432 122 35
Q ss_pred CCcccHHHHHHHHHHcCCC
Q psy13372 227 RGEIDYAYVFELLAREGYE 245 (273)
Q Consensus 227 ~G~id~~~i~~~L~~~gy~ 245 (273)
|..+...++..|+..|+.
T Consensus 231 -Gn~~~e~~~~~l~~~~~~ 248 (265)
T cd03174 231 -GNAATEDLVAALEGLGID 248 (265)
T ss_pred -cCccHHHHHHHHHhcCCC
Confidence 999999999999998865
No 48
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=97.47 E-value=0.039 Score=47.51 Aligned_cols=194 Identities=14% Similarity=0.121 Sum_probs=111.0
Q ss_pred CHHHHHHHHHHcCCCeEEecCCC---------CCCCHHHHHHHHHHc-CCeeEEEecCCccccCCCCCchhHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPP---------VGVTLEQLVAAQTRH-GLKQVLINTEVDENFGYAAVKGKESEFRASLE 91 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~---------~~~~~~~~~~~l~~~-gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (273)
...+.+..+.++||+.||+.+|. ...+.+.++.+.+.. +-.+.++.-- ...++..+.|. +..+
T Consensus 22 ~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~-~~~~~~~~~p~------~~~~ 94 (275)
T cd07937 22 DMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRG-QNLVGYRHYPD------DVVE 94 (275)
T ss_pred HHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhccc-ccccCccCCCc------HHHH
Confidence 34555677889999999999862 223334444443321 1223322210 00112222232 2344
Q ss_pred HHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHH
Q psy13372 92 KTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERL 171 (273)
Q Consensus 92 ~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~l 171 (273)
..++.+...|+..|++... . ++ ++.+.+.+++|++.|..+.+ ++.- ......+++...++
T Consensus 95 ~di~~~~~~g~~~iri~~~---~-------~~------~~~~~~~i~~ak~~G~~v~~-~i~~---~~~~~~~~~~~~~~ 154 (275)
T cd07937 95 LFVEKAAKNGIDIFRIFDA---L-------ND------VRNLEVAIKAVKKAGKHVEG-AICY---TGSPVHTLEYYVKL 154 (275)
T ss_pred HHHHHHHHcCCCEEEEeec---C-------Ch------HHHHHHHHHHHHHCCCeEEE-EEEe---cCCCCCCHHHHHHH
Confidence 5777788889999988531 1 11 56788888999999976554 2110 01124577888888
Q ss_pred HHHHhhcCCCceeEeeecccccccCCChHHHHHhc---CCcceeEEeccCCCC--------------------CCC--CC
Q psy13372 172 IRELRAHGISNVQLQFDFFNAQRICGDLTHTFGAC---RDLIGHVQIAQAPDR--------------------QEP--HA 226 (273)
Q Consensus 172 i~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~---~~~i~~vHi~d~~~~--------------------~~~--g~ 226 (273)
++++.+.+...+.++ |+.-.... ..+.+.++.+ .+--..+|.+|+.+. ... +.
T Consensus 155 ~~~~~~~Ga~~i~l~-DT~G~~~P-~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG~~a 232 (275)
T cd07937 155 AKELEDMGADSICIK-DMAGLLTP-YAAYELVKALKKEVGLPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPLSGGT 232 (275)
T ss_pred HHHHHHcCCCEEEEc-CCCCCCCH-HHHHHHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccCCc
Confidence 866666664545444 66443322 1233333333 233467899886432 112 34
Q ss_pred CCcccHHHHHHHHHHcCCC
Q psy13372 227 RGEIDYAYVFELLAREGYE 245 (273)
Q Consensus 227 ~G~id~~~i~~~L~~~gy~ 245 (273)
|..+...++..|+..||+
T Consensus 233 -GN~~~E~l~~~L~~~g~~ 250 (275)
T cd07937 233 -SQPSTESMVAALRGTGRD 250 (275)
T ss_pred -CChhHHHHHHHHHccCCC
Confidence 999999999999988876
No 49
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=97.46 E-value=0.015 Score=49.61 Aligned_cols=192 Identities=15% Similarity=0.051 Sum_probs=111.1
Q ss_pred HHHHHHHHHHcCCCeEEecCCCC-CCCHHHHHHHHHH-cCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHc
Q psy13372 23 YLDKYRVAAELGFRYIESWFPPV-GVTLEQLVAAQTR-HGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACAL 100 (273)
Q Consensus 23 ~~~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~l~~-~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l 100 (273)
-.+.++.+.++|++.||+.+|.- +.+.+.++++.+. .+.++..+.. .++ +-++.|...
T Consensus 22 k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~~~~~~~~~~~r---------~~~-----------~~v~~a~~~ 81 (259)
T cd07939 22 KLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIVALGLPARLIVWCR---------AVK-----------EDIEAALRC 81 (259)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecc---------CCH-----------HHHHHHHhC
Confidence 34556677889999999998842 1222444444431 2333332210 111 224666778
Q ss_pred CCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCC
Q psy13372 101 NIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGI 180 (273)
Q Consensus 101 G~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 180 (273)
|++.+++....-..... .......++.++.+.+++++|++.|..+.+-+. ...-.+++...++++++.+.+.
T Consensus 82 g~~~i~i~~~~s~~~~~--~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~------~~~~~~~~~~~~~~~~~~~~G~ 153 (259)
T cd07939 82 GVTAVHISIPVSDIHLA--HKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAE------DASRADPDFLIEFAEVAQEAGA 153 (259)
T ss_pred CcCEEEEEEecCHHHHH--HHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeec------cCCCCCHHHHHHHHHHHHHCCC
Confidence 99998886422111000 002234567788889999999999987665442 2234678888888866566654
Q ss_pred CceeEeeecccccccCCChHHHHHhc---CCcceeEEeccCCCC--------------------CCC--CCCCcccHHHH
Q psy13372 181 SNVQLQFDFFNAQRICGDLTHTFGAC---RDLIGHVQIAQAPDR--------------------QEP--HARGEIDYAYV 235 (273)
Q Consensus 181 ~~~g~~~D~~h~~~~~~~~~~~i~~~---~~~i~~vHi~d~~~~--------------------~~~--g~~G~id~~~i 235 (273)
..+.+ -|+.-.... .++.+.++.+ .+--..+|.+|+.+. ... +. |..+.+.+
T Consensus 154 ~~i~l-~DT~G~~~P-~~v~~lv~~l~~~~~~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~G~~a-GN~~tE~l 230 (259)
T cd07939 154 DRLRF-ADTVGILDP-FTTYELIRRLRAATDLPLEFHAHNDLGLATANTLAAVRAGATHVSVTVNGLGERA-GNAALEEV 230 (259)
T ss_pred CEEEe-CCCCCCCCH-HHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccccc-cCcCHHHH
Confidence 44433 355333221 1233333333 233457898886431 112 34 99999999
Q ss_pred HHHHHHc-CCC
Q psy13372 236 FELLARE-GYE 245 (273)
Q Consensus 236 ~~~L~~~-gy~ 245 (273)
+..|... |++
T Consensus 231 v~~l~~~~g~~ 241 (259)
T cd07939 231 VMALKHLYGRD 241 (259)
T ss_pred HHHHHHhcCCC
Confidence 9999987 775
No 50
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=97.42 E-value=0.032 Score=51.25 Aligned_cols=193 Identities=14% Similarity=0.133 Sum_probs=111.4
Q ss_pred HHHHHHHHHHcCCCeEEecCC--C-------CCCCHHHHHHHHHH-cCCeeEEEecCCccccCCCCCchhHHHHHHHHHH
Q psy13372 23 YLDKYRVAAELGFRYIESWFP--P-------VGVTLEQLVAAQTR-HGLKQVLINTEVDENFGYAAVKGKESEFRASLEK 92 (273)
Q Consensus 23 ~~~~l~~~~~~G~~~vEl~~~--~-------~~~~~~~~~~~l~~-~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (273)
..+.+..+.++||+.||+|.. + .+.+.+.++.+.+. .+..+.++.-.. ...|....|+ +-.+.
T Consensus 28 kl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~-N~~G~~~~pd------dvv~~ 100 (448)
T PRK12331 28 MLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQ-NLLGYRNYAD------DVVES 100 (448)
T ss_pred HHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccc-cccccccCch------hhHHH
Confidence 345566678889999999832 1 11233444444333 345555443210 1122222222 23456
Q ss_pred HHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcE--EEEccCCCCCCCCcccCCHHHHHH
Q psy13372 93 TIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLT--ALIEPVNQHSVPGYYLSSFRVAER 170 (273)
Q Consensus 93 ~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~--i~lE~~~~~~~~~~~~~~~~~~~~ 170 (273)
.++.|...|++.+++....- + . +.+.+.+++|+++|.. +++-... . ...+++-..+
T Consensus 101 ~v~~A~~~Gvd~irif~~ln--d------~--------~n~~~~v~~ak~~G~~v~~~i~~t~-----~-p~~~~~~~~~ 158 (448)
T PRK12331 101 FVQKSVENGIDIIRIFDALN--D------V--------RNLETAVKATKKAGGHAQVAISYTT-----S-PVHTIDYFVK 158 (448)
T ss_pred HHHHHHHCCCCEEEEEEecC--c------H--------HHHHHHHHHHHHcCCeEEEEEEeec-----C-CCCCHHHHHH
Confidence 77888889999998864211 1 1 2466678999999954 3332211 1 1357788888
Q ss_pred HHHHHhhcCCCceeEeeecccccccCC--ChHHHHHhcCCcceeEEeccCCCC----------------------CCCCC
Q psy13372 171 LIRELRAHGISNVQLQFDFFNAQRICG--DLTHTFGACRDLIGHVQIAQAPDR----------------------QEPHA 226 (273)
Q Consensus 171 li~~~~~~~~~~~g~~~D~~h~~~~~~--~~~~~i~~~~~~i~~vHi~d~~~~----------------------~~~g~ 226 (273)
+++++.+.+...+.+. |+.-...... .+...+++..+--.++|.+|+.|. -..|.
T Consensus 159 ~a~~l~~~Gad~I~i~-Dt~G~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~glg~ga 237 (448)
T PRK12331 159 LAKEMQEMGADSICIK-DMAGILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISPFAGGT 237 (448)
T ss_pred HHHHHHHcCCCEEEEc-CCCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcCCCEEEeeccccCCCc
Confidence 8877777765555544 6644332211 233333333344468999986432 13467
Q ss_pred CCcccHHHHHHHHHHcCCCc
Q psy13372 227 RGEIDYAYVFELLAREGYEG 246 (273)
Q Consensus 227 ~G~id~~~i~~~L~~~gy~g 246 (273)
|..+...++..|+..||+-
T Consensus 238 -GN~~tE~lv~~L~~~g~~t 256 (448)
T PRK12331 238 -SQPATESMVAALQDLGYDT 256 (448)
T ss_pred -CCHhHHHHHHHHHhcCCCC
Confidence 9999999999999988863
No 51
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=97.38 E-value=0.0056 Score=50.70 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEE
Q psy13372 92 KTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTAL 148 (273)
Q Consensus 92 ~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~ 148 (273)
..++.|+++|+.+|-+|+|....... . ....-.+.+...+.+|.+.|+.+.
T Consensus 138 ~qi~~A~~~GAd~VELhTG~yA~a~~----~--~~~~el~~~~~aa~~a~~lGL~Vn 188 (239)
T PRK05265 138 EQIEAAAEVGADRIELHTGPYADAKT----E--AEAAELERIAKAAKLAASLGLGVN 188 (239)
T ss_pred HHHHHHHHhCcCEEEEechhhhcCCC----c--chHHHHHHHHHHHHHHHHcCCEEe
Confidence 36888999999999999998744321 2 223346889999999999998764
No 52
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=97.25 E-value=0.069 Score=47.35 Aligned_cols=198 Identities=14% Similarity=0.059 Sum_probs=113.2
Q ss_pred CHHHH---HHHHHHcCCCeEEecCCCC------CCCHHHHHHHHHH-cCCeeEEEecCCccccCCCCCchhHHHHHHHHH
Q psy13372 22 NYLDK---YRVAAELGFRYIESWFPPV------GVTLEQLVAAQTR-HGLKQVLINTEVDENFGYAAVKGKESEFRASLE 91 (273)
Q Consensus 22 ~~~~~---l~~~~~~G~~~vEl~~~~~------~~~~~~~~~~l~~-~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (273)
+.++. ++.+.++|++.||...+-. -.+.+++.+.+.+ .+..+..+. . ..
T Consensus 66 s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~~~~l~----------~-----------n~ 124 (347)
T PLN02746 66 PTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARFPVLT----------P-----------NL 124 (347)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHhccCCceeEEc----------C-----------CH
Confidence 55555 4556788999999985311 1234444444443 233333221 1 12
Q ss_pred HHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEE--EccCCCCCCCCcccCCHHHHH
Q psy13372 92 KTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTAL--IEPVNQHSVPGYYLSSFRVAE 169 (273)
Q Consensus 92 ~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~--lE~~~~~~~~~~~~~~~~~~~ 169 (273)
+-++.|.+.|+..|.+....-+.... .......++.++.+.+++++|+++|+.+. +...-.. +...-.+++...
T Consensus 125 ~die~A~~~g~~~v~i~~s~Sd~h~~--~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~--p~~~r~~~~~l~ 200 (347)
T PLN02746 125 KGFEAAIAAGAKEVAVFASASESFSK--SNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGC--PIEGPVPPSKVA 200 (347)
T ss_pred HHHHHHHHcCcCEEEEEEecCHHHHH--HHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecC--CccCCCCHHHHH
Confidence 34555667899998776432110000 00234567888889999999999997764 4321111 223345788889
Q ss_pred HHHHHHhhcCCCceeEeeecccccccCCChHHHHHhc---CCc-ceeEEeccCCCC-----------------------C
Q psy13372 170 RLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGAC---RDL-IGHVQIAQAPDR-----------------------Q 222 (273)
Q Consensus 170 ~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~---~~~-i~~vHi~d~~~~-----------------------~ 222 (273)
++++++.+.+-..+.++ |+.-.... ..+.+.++.+ .+. -..+|.+|..+. +
T Consensus 201 ~~~~~~~~~Gad~I~l~-DT~G~a~P-~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~aGa~~vd~sv~GlG 278 (347)
T PLN02746 201 YVAKELYDMGCYEISLG-DTIGVGTP-GTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVSLQMGISTVDSSVAGLG 278 (347)
T ss_pred HHHHHHHHcCCCEEEec-CCcCCcCH-HHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccc
Confidence 99977777765544443 55333221 1233333333 232 367899986321 1
Q ss_pred ----CCCCCCcccHHHHHHHHHHcCCCc
Q psy13372 223 ----EPHARGEIDYAYVFELLAREGYEG 246 (273)
Q Consensus 223 ----~~g~~G~id~~~i~~~L~~~gy~g 246 (273)
.||..|..+.+.++..|...|++.
T Consensus 279 ecPfa~graGN~atE~lv~~L~~~G~~t 306 (347)
T PLN02746 279 GCPYAKGASGNVATEDVVYMLNGLGVST 306 (347)
T ss_pred CCCCCCCCCCChhHHHHHHHHHhcCCCC
Confidence 244349999999999999888763
No 53
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=97.23 E-value=0.037 Score=47.25 Aligned_cols=193 Identities=12% Similarity=0.069 Sum_probs=107.5
Q ss_pred HHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCC
Q psy13372 23 YLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNI 102 (273)
Q Consensus 23 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~ 102 (273)
-.+.++.+.++|++.||+..|..........+.+.+.++... +... ...+. +-++.|...|+
T Consensus 24 k~~i~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~l~~~~~~~~-v~~~------~r~~~-----------~di~~a~~~g~ 85 (262)
T cd07948 24 KIEIAKALDAFGVDYIELTSPAASPQSRADCEAIAKLGLKAK-ILTH------IRCHM-----------DDARIAVETGV 85 (262)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHhCCCCCc-EEEE------ecCCH-----------HHHHHHHHcCc
Confidence 355667778999999999987321122222233344444321 1111 00111 13566677899
Q ss_pred CeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCCCc
Q psy13372 103 PAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGISN 182 (273)
Q Consensus 103 ~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 182 (273)
+.|++....-..... . ......++.++.+.+++.+|++.|+.+.+-.. +.+-.+++...++++.+.+.+...
T Consensus 86 ~~i~i~~~~S~~~~~-~-~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e------da~r~~~~~l~~~~~~~~~~g~~~ 157 (262)
T cd07948 86 DGVDLVFGTSPFLRE-A-SHGKSITEIIESAVEVIEFVKSKGIEVRFSSE------DSFRSDLVDLLRVYRAVDKLGVNR 157 (262)
T ss_pred CEEEEEEecCHHHHH-H-HhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE------eeCCCCHHHHHHHHHHHHHcCCCE
Confidence 998886432110000 0 02334677888899999999999976555442 123445777788885556665333
Q ss_pred eeEeeecccccccCCChHHHHHhc---CCcceeEEeccCCCC--------------------CCC--CCCCcccHHHHHH
Q psy13372 183 VQLQFDFFNAQRICGDLTHTFGAC---RDLIGHVQIAQAPDR--------------------QEP--HARGEIDYAYVFE 237 (273)
Q Consensus 183 ~g~~~D~~h~~~~~~~~~~~i~~~---~~~i~~vHi~d~~~~--------------------~~~--g~~G~id~~~i~~ 237 (273)
+ ..-|+.-.... ..+.+.++.+ .+--..+|.+|+.+. ... +. |..+...++.
T Consensus 158 i-~l~Dt~G~~~P-~~v~~~~~~~~~~~~~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~s~~GlGera-Gn~~~e~~~~ 234 (262)
T cd07948 158 V-GIADTVGIATP-RQVYELVRTLRGVVSCDIEFHGHNDTGCAIANAYAALEAGATHIDTTVLGIGERN-GITPLGGLIA 234 (262)
T ss_pred E-EECCcCCCCCH-HHHHHHHHHHHHhcCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccccc-CCccHHHHHH
Confidence 3 33466443322 1233333333 333457899886431 112 35 8999999999
Q ss_pred HHHHcCC
Q psy13372 238 LLAREGY 244 (273)
Q Consensus 238 ~L~~~gy 244 (273)
.|...++
T Consensus 235 ~l~~~~~ 241 (262)
T cd07948 235 RMYTADP 241 (262)
T ss_pred HHHhccc
Confidence 9976643
No 54
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=97.21 E-value=0.045 Score=47.18 Aligned_cols=193 Identities=12% Similarity=0.033 Sum_probs=111.4
Q ss_pred CHHHHHHHHH----HcCCCeEEecCC-CCCCCHHHHHHHHHHc-------CCeeEEEecCCccccCCCCCchhHHHHHHH
Q psy13372 22 NYLDKYRVAA----ELGFRYIESWFP-PVGVTLEQLVAAQTRH-------GLKQVLINTEVDENFGYAAVKGKESEFRAS 89 (273)
Q Consensus 22 ~~~~~l~~~~----~~G~~~vEl~~~-~~~~~~~~~~~~l~~~-------gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (273)
+.++.++.++ ++|++.||+.+| ..+.+.+.++++.+.. ++.+.++ .+
T Consensus 17 s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~----------~~----------- 75 (280)
T cd07945 17 SPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGF----------VD----------- 75 (280)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEe----------cC-----------
Confidence 5566665554 449999999877 3322335555554422 2222221 01
Q ss_pred HHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcE--EEEccCCCCCCCCcccCCHHH
Q psy13372 90 LEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLT--ALIEPVNQHSVPGYYLSSFRV 167 (273)
Q Consensus 90 ~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~--i~lE~~~~~~~~~~~~~~~~~ 167 (273)
..+.++.|...|++.|.+....-..... . ......++.++.+.+++++|+++|+. +.+|-.. +.+-.+++.
T Consensus 76 ~~~~~~~A~~~g~~~i~i~~~~S~~h~~-~-~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~-----~~~r~~~~~ 148 (280)
T cd07945 76 GDKSVDWIKSAGAKVLNLLTKGSLKHCT-E-QLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWS-----NGMRDSPDY 148 (280)
T ss_pred cHHHHHHHHHCCCCEEEEEEeCCHHHHH-H-HHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCC-----CCCcCCHHH
Confidence 1235777888999998886432111000 0 02234678888899999999999964 5666421 123457888
Q ss_pred HHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhcC----CcceeEEeccCCCC--------------------CC
Q psy13372 168 AERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACR----DLIGHVQIAQAPDR--------------------QE 223 (273)
Q Consensus 168 ~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~----~~i~~vHi~d~~~~--------------------~~ 223 (273)
..++++++.+.+-..+.++ |+.-..... .+.+.++.+. +--..+|.+|..+. ..
T Consensus 149 ~~~~~~~~~~~G~~~i~l~-DT~G~~~P~-~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~G 226 (280)
T cd07945 149 VFQLVDFLSDLPIKRIMLP-DTLGILSPF-ETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNG 226 (280)
T ss_pred HHHHHHHHHHcCCCEEEec-CCCCCCCHH-HHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 8899966666664444443 543332221 2333443332 23457999986431 12
Q ss_pred CC--CCCcccHHHHHHHHHH-cCCC
Q psy13372 224 PH--ARGEIDYAYVFELLAR-EGYE 245 (273)
Q Consensus 224 ~g--~~G~id~~~i~~~L~~-~gy~ 245 (273)
.| . |..+...++..|+. .|++
T Consensus 227 lGe~a-GN~~~E~~v~~L~~~~g~~ 250 (280)
T cd07945 227 LGERA-GNAPLASVIAVLKDKLKVK 250 (280)
T ss_pred ccccc-cCccHHHHHHHHHHhcCCC
Confidence 23 4 89999999999964 6775
No 55
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=97.16 E-value=0.063 Score=46.12 Aligned_cols=203 Identities=14% Similarity=0.117 Sum_probs=111.8
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCC-CCCHHHHHHHHHHc--CCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPV-GVTLEQLVAAQTRH--GLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYAC 98 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~l~~~--gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~ 98 (273)
.-.+.++.+.++|++.||+.+|.. ..+.+.++++.+.. +.++..+.... ..+.. .+ -.+.++.+.
T Consensus 21 ~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~-~~---------~~~~~~~a~ 88 (273)
T cd07941 21 DKLRIARKLDELGVDYIEGGWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTR--RAGVK-AE---------EDPNLQALL 88 (273)
T ss_pred HHHHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCCCCcEEEEEeccc--ccCCC-cc---------chHHHHHHH
Confidence 345667788899999999977642 12333344433322 33444333210 11110 00 114567778
Q ss_pred HcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhc
Q psy13372 99 ALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAH 178 (273)
Q Consensus 99 ~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~ 178 (273)
..|+..|++....-..... . ......++.++.+.+++++|+++|..+.+=++..+ ...-.+++...++++++.+.
T Consensus 89 ~~g~~~i~i~~~~sd~~~~-~-~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~---d~~~~~~~~~~~~~~~~~~~ 163 (273)
T cd07941 89 EAGTPVVTIFGKSWDLHVT-E-ALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFF---DGYKANPEYALATLKAAAEA 163 (273)
T ss_pred hCCCCEEEEEEcCCHHHHH-H-HcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEecc---ccCCCCHHHHHHHHHHHHhC
Confidence 8899998875432110000 0 02233567788899999999999987655322111 11245677778888665665
Q ss_pred CCCceeEeeecccccccCCChHHHHHhc---CC-cceeEEeccCCCC--------------------CCC--CCCCcccH
Q psy13372 179 GISNVQLQFDFFNAQRICGDLTHTFGAC---RD-LIGHVQIAQAPDR--------------------QEP--HARGEIDY 232 (273)
Q Consensus 179 ~~~~~g~~~D~~h~~~~~~~~~~~i~~~---~~-~i~~vHi~d~~~~--------------------~~~--g~~G~id~ 232 (273)
+-..+. +-|+.-..... .+.+.++.+ .+ --..+|.+++.+. ... +. |..+.
T Consensus 164 g~~~i~-l~DT~G~~~P~-~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~s~~GlGera-Gn~~~ 240 (273)
T cd07941 164 GADWLV-LCDTNGGTLPH-EIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQVQGTINGYGERC-GNANL 240 (273)
T ss_pred CCCEEE-EecCCCCCCHH-HHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCEEEEecccccccc-ccccH
Confidence 544443 45664433221 233333333 33 4457899986431 112 35 89999
Q ss_pred HHHHHHHH-HcCC
Q psy13372 233 AYVFELLA-REGY 244 (273)
Q Consensus 233 ~~i~~~L~-~~gy 244 (273)
..++..|. ..||
T Consensus 241 e~~~~~L~~~~~~ 253 (273)
T cd07941 241 CSIIPNLQLKMGY 253 (273)
T ss_pred HHHHHHHHhccCC
Confidence 99999997 4555
No 56
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=97.12 E-value=0.068 Score=46.26 Aligned_cols=194 Identities=15% Similarity=0.120 Sum_probs=108.6
Q ss_pred HHHHHHHHHcCCCeEEec-------CCCCCCCHHHHHHHHHH-cCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESW-------FPPVGVTLEQLVAAQTR-HGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQ 95 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~-------~~~~~~~~~~~~~~l~~-~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (273)
.+.++.+.++|++.||+. +|.- .+..+..+.+.+ .+..+..+. .+ .+-++
T Consensus 29 ~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~-~d~~e~~~~l~~~~~~~~~~l~----------~~-----------~~~ie 86 (287)
T PRK05692 29 IALIDRLSAAGLSYIEVASFVSPKWVPQM-ADAAEVMAGIQRRPGVTYAALT----------PN-----------LKGLE 86 (287)
T ss_pred HHHHHHHHHcCCCEEEeCCCcCccccccc-ccHHHHHHhhhccCCCeEEEEe----------cC-----------HHHHH
Confidence 344566678899999997 2321 222333333322 234333321 11 12346
Q ss_pred HHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEE--EccCCCCCCCCcccCCHHHHHHHHH
Q psy13372 96 YACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTAL--IEPVNQHSVPGYYLSSFRVAERLIR 173 (273)
Q Consensus 96 ~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~--lE~~~~~~~~~~~~~~~~~~~~li~ 173 (273)
.|.+.|++.+++....-..... .......++.++.+.+.+++|+++|+.+. +...-.. +...-.+++...++++
T Consensus 87 ~A~~~g~~~v~i~~~~s~~~~~--~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~--~~~~~~~~~~~~~~~~ 162 (287)
T PRK05692 87 AALAAGADEVAVFASASEAFSQ--KNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGC--PYEGEVPPEAVADVAE 162 (287)
T ss_pred HHHHcCCCEEEEEEecCHHHHH--HHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecC--CCCCCCCHHHHHHHHH
Confidence 6677899998886432111000 00234467788889999999999997653 3321110 1222457888899996
Q ss_pred HHhhcCCCceeEeeecccccccCCChHHHHHhc----CCcceeEEeccCCCC-----------------------C----
Q psy13372 174 ELRAHGISNVQLQFDFFNAQRICGDLTHTFGAC----RDLIGHVQIAQAPDR-----------------------Q---- 222 (273)
Q Consensus 174 ~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~----~~~i~~vHi~d~~~~-----------------------~---- 222 (273)
++.+.+...+.+ -|+.-.... ..+.+.++.+ .+--..+|.+++.|. +
T Consensus 163 ~~~~~G~d~i~l-~DT~G~~~P-~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~id~s~~GlGecpf 240 (287)
T PRK05692 163 RLFALGCYEISL-GDTIGVGTP-GQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFDASVGGLGGCPY 240 (287)
T ss_pred HHHHcCCcEEEe-ccccCccCH-HHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCEEEEEccccCCCCC
Confidence 666666443333 355333221 1233333332 223457898886321 1
Q ss_pred CCCCCCcccHHHHHHHHHHcCCC
Q psy13372 223 EPHARGEIDYAYVFELLAREGYE 245 (273)
Q Consensus 223 ~~g~~G~id~~~i~~~L~~~gy~ 245 (273)
.||..|..+...++..|+..||+
T Consensus 241 a~g~aGN~~~E~lv~~L~~~g~~ 263 (287)
T PRK05692 241 APGASGNVATEDVLYMLHGLGIE 263 (287)
T ss_pred CCCccccccHHHHHHHHHhcCCC
Confidence 24423999999999999988876
No 57
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=97.09 E-value=0.032 Score=52.41 Aligned_cols=201 Identities=13% Similarity=0.092 Sum_probs=116.2
Q ss_pred HHHHHHHHcCCCeEEecCCCC-CCCHHHHHHHHHHcCC---eeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHc
Q psy13372 25 DKYRVAAELGFRYIESWFPPV-GVTLEQLVAAQTRHGL---KQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACAL 100 (273)
Q Consensus 25 ~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~l~~~gL---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l 100 (273)
+.++.+.++|++.||..+|.. ..+.+.++++.+ .++ ++.+++... .++.. -...+.++.+...
T Consensus 27 ~Ia~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~-~~~~~~~i~~~~r~~--------r~~~~----~~~d~~~ea~~~~ 93 (526)
T TIGR00977 27 RIAERLDDLGIHYIEGGWPGANPKDVQFFWQLKE-MNFKNAKIVAFCSTR--------RPHKK----VEEDKMLQALIKA 93 (526)
T ss_pred HHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHH-hCCCCcEEEEEeeec--------CCCCC----CchHHHHHHHhcC
Confidence 445566888999999988843 234555665543 344 344433110 01100 1234567777888
Q ss_pred CCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCC
Q psy13372 101 NIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGI 180 (273)
Q Consensus 101 G~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 180 (273)
|.+.|.+....-+..... ......++..+.+.+.+.+|+++|..+.+-.+..+ +.+-.+++-+.++++...+.+.
T Consensus 94 ~~~~v~i~~~~Sd~h~~~--~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~---D~~r~~~~~l~~~~~~a~~aGa 168 (526)
T TIGR00977 94 ETPVVTIFGKSWDLHVLE--ALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFF---DGYKANPEYALATLATAQQAGA 168 (526)
T ss_pred CCCEEEEEeCCCHHHHHH--HhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeee---ecccCCHHHHHHHHHHHHhCCC
Confidence 999888764332110000 02334677888888999999999977654332111 1234678888899955555665
Q ss_pred CceeEeeecccccccCCChHHHHHhc---CCcc-eeEEeccCCCC--------------------CCCCC-CCcccHHHH
Q psy13372 181 SNVQLQFDFFNAQRICGDLTHTFGAC---RDLI-GHVQIAQAPDR--------------------QEPHA-RGEIDYAYV 235 (273)
Q Consensus 181 ~~~g~~~D~~h~~~~~~~~~~~i~~~---~~~i-~~vHi~d~~~~--------------------~~~g~-~G~id~~~i 235 (273)
..+.++ ||.-..... .+.+.++.+ .+.. ..+|.+|.-|. ...|. .|..+...+
T Consensus 169 d~i~i~-DTvG~~~P~-~v~~li~~l~~~~~~~~i~vH~HND~GlAvANslaAv~AGA~~Vd~TinGiGERaGNa~Le~v 246 (526)
T TIGR00977 169 DWLVLC-DTNGGTLPH-EISEITTKVKRSLKQPQLGIHAHNDSGTAVANSLLAVEAGATMVQGTINGYGERCGNANLCSL 246 (526)
T ss_pred CeEEEe-cCCCCcCHH-HHHHHHHHHHHhCCCCEEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccCccCCCcHHHH
Confidence 666666 875443322 233333333 3333 78999985321 12332 388999999
Q ss_pred HHHHHH-cCCC
Q psy13372 236 FELLAR-EGYE 245 (273)
Q Consensus 236 ~~~L~~-~gy~ 245 (273)
.-.|.. .||+
T Consensus 247 ~~~L~~~~g~~ 257 (526)
T TIGR00977 247 IPNLQLKLGYD 257 (526)
T ss_pred HHHHHhhcCCC
Confidence 988874 6664
No 58
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=97.09 E-value=0.059 Score=48.34 Aligned_cols=191 Identities=15% Similarity=0.047 Sum_probs=108.0
Q ss_pred HHHHHHHHHcCCCeEEecCCCC-CCCHHHHHHHHHHcCC--eeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHc
Q psy13372 24 LDKYRVAAELGFRYIESWFPPV-GVTLEQLVAAQTRHGL--KQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACAL 100 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~l~~~gL--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l 100 (273)
.+.++.+.++|++.||+.+|.- +.+.+.++.+ .+.+. ++.++.. .. .+-++.|...
T Consensus 26 ~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i-~~~~~~~~i~~~~r---------~~-----------~~di~~a~~~ 84 (365)
T TIGR02660 26 LAIARALDEAGVDELEVGIPAMGEEERAVIRAI-VALGLPARLMAWCR---------AR-----------DADIEAAARC 84 (365)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH-HHcCCCcEEEEEcC---------CC-----------HHHHHHHHcC
Confidence 4556677888999999998842 1222444444 44443 3332210 11 1235667778
Q ss_pred CCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCC
Q psy13372 101 NIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGI 180 (273)
Q Consensus 101 G~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 180 (273)
|+..|++....-+..... ......++.++.+.+++++|+++|..+.+=+. ...-.+++.+.++++++.+.+.
T Consensus 85 g~~~i~i~~~~Sd~~~~~--~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~e------d~~r~~~~~l~~~~~~~~~~Ga 156 (365)
T TIGR02660 85 GVDAVHISIPVSDLQIEA--KLRKDRAWVLERLARLVSFARDRGLFVSVGGE------DASRADPDFLVELAEVAAEAGA 156 (365)
T ss_pred CcCEEEEEEccCHHHHHH--HhCcCHHHHHHHHHHHHHHHHhCCCEEEEeec------CCCCCCHHHHHHHHHHHHHcCc
Confidence 999988865321100000 01223566777788899999999976554332 2234567888888865566654
Q ss_pred CceeEeeecccccccCCChHHHHHhcC---CcceeEEeccCCCC--------------------CCCCC-CCcccHHHHH
Q psy13372 181 SNVQLQFDFFNAQRICGDLTHTFGACR---DLIGHVQIAQAPDR--------------------QEPHA-RGEIDYAYVF 236 (273)
Q Consensus 181 ~~~g~~~D~~h~~~~~~~~~~~i~~~~---~~i~~vHi~d~~~~--------------------~~~g~-~G~id~~~i~ 236 (273)
..+.+ -|+.-.... ..+.+.++.+. +-...+|.++..+. ...|. .|..+...++
T Consensus 157 ~~i~l-~DT~G~~~P-~~v~~lv~~l~~~~~v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiGeraGN~~lE~lv 234 (365)
T TIGR02660 157 DRFRF-ADTVGILDP-FSTYELVRALRQAVDLPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLGERAGNAALEEVA 234 (365)
T ss_pred CEEEE-cccCCCCCH-HHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhCCCEEEEEeeccccccccCCHHHHH
Confidence 44433 354322221 12334444432 23357898885431 12332 2899999999
Q ss_pred HHH-HHcCCC
Q psy13372 237 ELL-AREGYE 245 (273)
Q Consensus 237 ~~L-~~~gy~ 245 (273)
..| ...|++
T Consensus 235 ~~L~~~~g~~ 244 (365)
T TIGR02660 235 MALKRLLGRD 244 (365)
T ss_pred HHHHHhcCCC
Confidence 999 656765
No 59
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=97.07 E-value=0.07 Score=47.83 Aligned_cols=194 Identities=15% Similarity=0.148 Sum_probs=109.7
Q ss_pred HHHHHHHHHcCCCeEEecCCCC-CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCC
Q psy13372 24 LDKYRVAAELGFRYIESWFPPV-GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNI 102 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~ 102 (273)
.+.++.+.++|++.||+.+|.. +.+.+.++.+.+ .++... +.... . .. .+-++.|...|+
T Consensus 25 ~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~-~~~~~~-v~~~~---r---~~-----------~~di~~a~~~g~ 85 (363)
T TIGR02090 25 VEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQ-EGLNAE-ICSLA---R---AL-----------KKDIDKAIDCGV 85 (363)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHh-cCCCcE-EEEEc---c---cC-----------HHHHHHHHHcCc
Confidence 4556677888999999988732 233344444443 454422 21110 0 11 233666778899
Q ss_pred CeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCCCc
Q psy13372 103 PAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGISN 182 (273)
Q Consensus 103 ~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 182 (273)
+.|++..+.-+.... .......++.++.+.+.+++|++.|..+.+=... ..-.+++.+.++++.+.+.+...
T Consensus 86 ~~i~i~~~~Sd~~~~--~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ed------a~r~~~~~l~~~~~~~~~~g~~~ 157 (363)
T TIGR02090 86 DSIHTFIATSPIHLK--YKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAED------ATRTDIDFLIKVFKRAEEAGADR 157 (363)
T ss_pred CEEEEEEcCCHHHHH--HHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEee------cCCCCHHHHHHHHHHHHhCCCCE
Confidence 998886432111000 0012245667788888889999999654433211 23457888888885556665444
Q ss_pred eeEeeecccccccCCChHHHHHhcCC---cceeEEeccCCCC--------------------CCCCC-CCcccHHHHHHH
Q psy13372 183 VQLQFDFFNAQRICGDLTHTFGACRD---LIGHVQIAQAPDR--------------------QEPHA-RGEIDYAYVFEL 238 (273)
Q Consensus 183 ~g~~~D~~h~~~~~~~~~~~i~~~~~---~i~~vHi~d~~~~--------------------~~~g~-~G~id~~~i~~~ 238 (273)
+.++ |+.-.... ..+.+.++.+.. -...+|.+|..+. ...|. .|..+...++..
T Consensus 158 i~l~-DT~G~~~P-~~v~~li~~l~~~~~~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~GlGeraGN~~lE~vv~~ 235 (363)
T TIGR02090 158 INIA-DTVGVLTP-QKMEELIKKLKENVKLPISVHCHNDFGLATANSIAGVKAGAEQVHVTVNGIGERAGNAALEEVVMA 235 (363)
T ss_pred EEEe-CCCCccCH-HHHHHHHHHHhcccCceEEEEecCCCChHHHHHHHHHHCCCCEEEEEeeccccccccccHHHHHHH
Confidence 4443 54322221 224444555443 3357888886331 11221 299999999999
Q ss_pred HHH-cCCCc
Q psy13372 239 LAR-EGYEG 246 (273)
Q Consensus 239 L~~-~gy~g 246 (273)
|.. .||+-
T Consensus 236 L~~~~g~~~ 244 (363)
T TIGR02090 236 LKYLYGVKT 244 (363)
T ss_pred HHHhhCCCC
Confidence 987 67763
No 60
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=97.06 E-value=0.067 Score=45.70 Aligned_cols=183 Identities=14% Similarity=0.045 Sum_probs=106.9
Q ss_pred CHHHHHHHHHHcCCCeEEecCC-----------C-CCCCHHHHHHHHHH-cCCeeEEEecCCccccCCCCCchhHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFP-----------P-VGVTLEQLVAAQTR-HGLKQVLINTEVDENFGYAAVKGKESEFRA 88 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~-----------~-~~~~~~~~~~~l~~-~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (273)
...+.++.+.++|++.||++++ + ...+.+.++.+.+. .+.++..+..+ +. ..
T Consensus 23 ~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~-----~~-~~--------- 87 (263)
T cd07943 23 QVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLP-----GI-GT--------- 87 (263)
T ss_pred HHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecC-----Cc-cC---------
Confidence 4456677788899999999832 1 11233445554443 24555444321 11 11
Q ss_pred HHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHH
Q psy13372 89 SLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVA 168 (273)
Q Consensus 89 ~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~ 168 (273)
.+-++.+...|++.+++... . ++ ...+.+++++|++.|..+.+-.+. ....+++..
T Consensus 88 --~~~i~~a~~~g~~~iri~~~---~-------s~------~~~~~~~i~~ak~~G~~v~~~~~~------~~~~~~~~~ 143 (263)
T cd07943 88 --VDDLKMAADLGVDVVRVATH---C-------TE------ADVSEQHIGAARKLGMDVVGFLMM------SHMASPEEL 143 (263)
T ss_pred --HHHHHHHHHcCCCEEEEEec---h-------hh------HHHHHHHHHHHHHCCCeEEEEEEe------ccCCCHHHH
Confidence 13356677789999988531 1 11 124677889999999654443321 134577888
Q ss_pred HHHHHHHhhcCCCceeEeeecccccccCCChHHH---HHhcCCc-ceeEEeccCCCC--------------------CCC
Q psy13372 169 ERLIRELRAHGISNVQLQFDFFNAQRICGDLTHT---FGACRDL-IGHVQIAQAPDR--------------------QEP 224 (273)
Q Consensus 169 ~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~---i~~~~~~-i~~vHi~d~~~~--------------------~~~ 224 (273)
.++++.+.+.+...+. .-|+.-.... .++.+. +++..+- -..+|.+|+.+. ...
T Consensus 144 ~~~~~~~~~~G~d~i~-l~DT~G~~~P-~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd~s~~Gl 221 (263)
T cd07943 144 AEQAKLMESYGADCVY-VTDSAGAMLP-DDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGATRIDGSLAGL 221 (263)
T ss_pred HHHHHHHHHcCCCEEE-EcCCCCCcCH-HHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCCCEEEeecccc
Confidence 8888666666655453 3576444332 123333 3333333 567899986431 112
Q ss_pred --CCCCcccHHHHHHHHHHcCCCc
Q psy13372 225 --HARGEIDYAYVFELLAREGYEG 246 (273)
Q Consensus 225 --g~~G~id~~~i~~~L~~~gy~g 246 (273)
+. |..+...++..|...||..
T Consensus 222 G~~a-GN~~~E~lv~~L~~~g~~~ 244 (263)
T cd07943 222 GAGA-GNTPLEVLVAVLERMGIET 244 (263)
T ss_pred cCCc-CCccHHHHHHHHHhcCCCC
Confidence 34 9999999999998888753
No 61
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=97.03 E-value=0.079 Score=45.38 Aligned_cols=192 Identities=14% Similarity=0.098 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHcCCCeEEecCCC-CCCCHHHHHHHHHH-cCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPP-VGVTLEQLVAAQTR-HGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACA 99 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~-~~~~~~~~~~~l~~-~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 99 (273)
...+.++.+.++|++.||+.++. .+.+.+.++.+.+. .+.++..+.- .. ..-++.|..
T Consensus 21 ~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~~~~~~~~~l~r---------~~-----------~~~v~~a~~ 80 (268)
T cd07940 21 EKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRIAREVLNAEICGLAR---------AV-----------KKDIDAAAE 80 (268)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEEEcc---------CC-----------HhhHHHHHH
Confidence 44566778889999999998764 22233444443331 2344443321 11 122444455
Q ss_pred cC----CCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHH
Q psy13372 100 LN----IPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIREL 175 (273)
Q Consensus 100 lG----~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~ 175 (273)
.| ++.|++....-+.... .......++.++.+.+++++|++.|..+.+-+. ...-.+++...++++++
T Consensus 81 ~~~~~~~~~i~i~~~~s~~~~~--~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~------~~~~~~~~~~~~~~~~~ 152 (268)
T cd07940 81 ALKPAKVDRIHTFIATSDIHLK--YKLKKTREEVLERAVEAVEYAKSHGLDVEFSAE------DATRTDLDFLIEVVEAA 152 (268)
T ss_pred hCCCCCCCEEEEEecCCHHHHH--HHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeee------cCCCCCHHHHHHHHHHH
Confidence 56 8888886432100000 001223456778888999999999988887552 22346788888888666
Q ss_pred hhcCCCceeEeeecccccccCCChH---HHHHhcCC---cceeEEeccCCCC--------------------CCCCC-CC
Q psy13372 176 RAHGISNVQLQFDFFNAQRICGDLT---HTFGACRD---LIGHVQIAQAPDR--------------------QEPHA-RG 228 (273)
Q Consensus 176 ~~~~~~~~g~~~D~~h~~~~~~~~~---~~i~~~~~---~i~~vHi~d~~~~--------------------~~~g~-~G 228 (273)
.+++...+.++ |+.-.... .++. ..+++..+ -...+|.+|+.+. ...|. .|
T Consensus 153 ~~~G~~~i~l~-DT~G~~~P-~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG~~aG 230 (268)
T cd07940 153 IEAGATTINIP-DTVGYLTP-EEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIGERAG 230 (268)
T ss_pred HHcCCCEEEEC-CCCCCCCH-HHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeeccccccc
Confidence 66654444433 55332221 1233 33333333 3457999987432 12222 28
Q ss_pred cccHHHHHHHHHHcC
Q psy13372 229 EIDYAYVFELLAREG 243 (273)
Q Consensus 229 ~id~~~i~~~L~~~g 243 (273)
.++.+.++..|...|
T Consensus 231 N~~tE~lv~~L~~~~ 245 (268)
T cd07940 231 NAALEEVVMALKTRY 245 (268)
T ss_pred cccHHHHHHHHHhcc
Confidence 999999999998886
No 62
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=97.01 E-value=0.11 Score=45.90 Aligned_cols=183 Identities=11% Similarity=0.008 Sum_probs=108.2
Q ss_pred CHHHHHHHHHHcCCCeEEecCC---------CC---CCCHHHHHHHHHHcC-CeeEEEecCCccccCCCCCchhHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFP---------PV---GVTLEQLVAAQTRHG-LKQVLINTEVDENFGYAAVKGKESEFRA 88 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~---------~~---~~~~~~~~~~l~~~g-L~i~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (273)
...+.++.+.++|++.||++.. ++ ..+.+.+++..+... .++..+..+. .. +
T Consensus 25 ~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg-----~~-~--------- 89 (333)
T TIGR03217 25 QVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPG-----IG-T--------- 89 (333)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccC-----cc-C---------
Confidence 4556677778899999999621 11 123455555554422 4444443221 11 1
Q ss_pred HHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHH
Q psy13372 89 SLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVA 168 (273)
Q Consensus 89 ~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~ 168 (273)
.+-++.|...|++.|++.... ++ .+...+.++++++.|..+..=.+. .+..+++..
T Consensus 90 --~~dl~~a~~~gvd~iri~~~~----------~e------~d~~~~~i~~ak~~G~~v~~~l~~------s~~~~~e~l 145 (333)
T TIGR03217 90 --VHDLKAAYDAGARTVRVATHC----------TE------ADVSEQHIGMARELGMDTVGFLMM------SHMTPPEKL 145 (333)
T ss_pred --HHHHHHHHHCCCCEEEEEecc----------ch------HHHHHHHHHHHHHcCCeEEEEEEc------ccCCCHHHH
Confidence 123677888999999986421 11 123567888999999765543322 235678888
Q ss_pred HHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhcC---C--cceeEEeccCCCC--------------------CC
Q psy13372 169 ERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACR---D--LIGHVQIAQAPDR--------------------QE 223 (273)
Q Consensus 169 ~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~---~--~i~~vHi~d~~~~--------------------~~ 223 (273)
.++++.+.+.+.. .=.+-|+.-.... .++.+.++.+. + --..+|.+++.+. ..
T Consensus 146 ~~~a~~~~~~Ga~-~i~i~DT~G~~~P-~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G 223 (333)
T TIGR03217 146 AEQAKLMESYGAD-CVYIVDSAGAMLP-DDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRIDASLRG 223 (333)
T ss_pred HHHHHHHHhcCCC-EEEEccCCCCCCH-HHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCCEEEeeccc
Confidence 8888555666533 3355577544332 23333333332 2 3357898886431 01
Q ss_pred --CCCCCcccHHHHHHHHHHcCCCc
Q psy13372 224 --PHARGEIDYAYVFELLAREGYEG 246 (273)
Q Consensus 224 --~g~~G~id~~~i~~~L~~~gy~g 246 (273)
-|. |..+.+.++..|.+.||+.
T Consensus 224 ~G~~a-GN~~~E~lv~~l~~~g~~t 247 (333)
T TIGR03217 224 LGAGA-GNAPLEVFVAVLDRLGWNT 247 (333)
T ss_pred ccccc-cCccHHHHHHHHHhcCCCC
Confidence 246 9999999999999988764
No 63
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=96.99 E-value=0.16 Score=48.49 Aligned_cols=193 Identities=15% Similarity=0.145 Sum_probs=112.3
Q ss_pred CHHHHHHHHHHcCCCeEEecCC--C-------CCCCHHHHHHHHHH-cCCeeEEEecCCccccCCCCCchhHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFP--P-------VGVTLEQLVAAQTR-HGLKQVLINTEVDENFGYAAVKGKESEFRASLE 91 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~--~-------~~~~~~~~~~~l~~-~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (273)
+....+..+.++||+.||+|+. + .+.+.+.++.+.+. .+..+.++.-. ..-.|..+.|+ +-.+
T Consensus 27 d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg-~N~~gy~~ypd------~vv~ 99 (592)
T PRK09282 27 DMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRG-QNLVGYRHYPD------DVVE 99 (592)
T ss_pred HHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEecc-ccccccccccc------hhhH
Confidence 3455566778889999999942 1 12233455554433 24555554321 01122222222 2355
Q ss_pred HHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEE--EEccCCCCCCCCcccCCHHHHH
Q psy13372 92 KTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTA--LIEPVNQHSVPGYYLSSFRVAE 169 (273)
Q Consensus 92 ~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i--~lE~~~~~~~~~~~~~~~~~~~ 169 (273)
..++.|...|+..+++....- + ++.+++..+.++++|..+ ++.-... | ..+++..+
T Consensus 100 ~~v~~A~~~Gvd~irif~~ln----------d------~~n~~~~i~~ak~~G~~v~~~i~~t~~---p---~~t~~~~~ 157 (592)
T PRK09282 100 KFVEKAAENGIDIFRIFDALN----------D------VRNMEVAIKAAKKAGAHVQGTISYTTS---P---VHTIEKYV 157 (592)
T ss_pred HHHHHHHHCCCCEEEEEEecC----------h------HHHHHHHHHHHHHcCCEEEEEEEeccC---C---CCCHHHHH
Confidence 678888889999999864211 0 246677778888888643 2321110 1 35788889
Q ss_pred HHHHHHhhcCCCceeEeeecccccccC--CChHHHHHhcCCcceeEEeccCCCC--------------------C--CCC
Q psy13372 170 RLIRELRAHGISNVQLQFDFFNAQRIC--GDLTHTFGACRDLIGHVQIAQAPDR--------------------Q--EPH 225 (273)
Q Consensus 170 ~li~~~~~~~~~~~g~~~D~~h~~~~~--~~~~~~i~~~~~~i~~vHi~d~~~~--------------------~--~~g 225 (273)
++++++.+.+...+.++ |+.-..... ..+...++...+--.++|.+|+.|. . ..|
T Consensus 158 ~~a~~l~~~Gad~I~i~-Dt~G~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ai~g~g~~ 236 (592)
T PRK09282 158 ELAKELEEMGCDSICIK-DMAGLLTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYLKAVEAGVDIIDTAISPLAFG 236 (592)
T ss_pred HHHHHHHHcCCCEEEEC-CcCCCcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHHHHHHhCCCEEEeeccccCCC
Confidence 99977777765545444 553332211 1223333333344468999986432 1 246
Q ss_pred CCCcccHHHHHHHHHHcCCC
Q psy13372 226 ARGEIDYAYVFELLAREGYE 245 (273)
Q Consensus 226 ~~G~id~~~i~~~L~~~gy~ 245 (273)
. |..+...++..|+..||+
T Consensus 237 a-gn~~~e~vv~~L~~~g~~ 255 (592)
T PRK09282 237 T-SQPPTESMVAALKGTPYD 255 (592)
T ss_pred c-CCHhHHHHHHHHHhCCCC
Confidence 6 999999999999988886
No 64
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=96.95 E-value=0.067 Score=46.40 Aligned_cols=216 Identities=14% Similarity=0.171 Sum_probs=119.4
Q ss_pred ccccccccccccc--cCHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEE-EecCCccccCCCCCchhHH
Q psy13372 8 LAANLTLLFNDLA--ANYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVL-INTEVDENFGYAAVKGKES 84 (273)
Q Consensus 8 ~~~~~~~~~~~~~--~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~-~~~~~~~~~~~~~~~~~~~ 84 (273)
+.+++ |..+... ...-++++.+.++|++-|-+..|.. .+++.++++.++..+.++. +|+.
T Consensus 22 I~VQS-MTnT~T~Dv~aTv~QI~~L~~aG~dIVRvtv~~~-e~A~A~~~Ik~~~~vPLVaDiHf~--------------- 84 (361)
T COG0821 22 IVVQS-MTNTDTADVEATVAQIKALERAGCDIVRVTVPDM-EAAEALKEIKQRLNVPLVADIHFD--------------- 84 (361)
T ss_pred eEEEe-ccCCCcccHHHHHHHHHHHHHcCCCEEEEecCCH-HHHHHHHHHHHhCCCCEEEEeecc---------------
Confidence 44444 5555531 1234456667788999999998865 6778888888888777663 3211
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEcc-CCCCC-------
Q psy13372 85 EFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEP-VNQHS------- 156 (273)
Q Consensus 85 ~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~-~~~~~------- 156 (273)
-+.+-.+.+.|+..+++.||+.+.. +.++.+++.|+++|+.+-|=- ++.-+
T Consensus 85 ------~rla~~~~~~g~~k~RINPGNig~~---------------~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky 143 (361)
T COG0821 85 ------YRLALEAAECGVDKVRINPGNIGFK---------------DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKY 143 (361)
T ss_pred ------HHHHHHhhhcCcceEEECCcccCcH---------------HHHHHHHHHHHHcCCCEEEecccCchhHHHHHHh
Confidence 1334445567899999999988543 178899999999996554432 11100
Q ss_pred ---CCCcccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhcCCccee-EEeccCCCCCCCCCCCcccH
Q psy13372 157 ---VPGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACRDLIGH-VQIAQAPDRQEPHARGEIDY 232 (273)
Q Consensus 157 ---~~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~~-vHi~d~~~~~~~g~~G~id~ 232 (273)
.+..+..|.-.-.+++ ++++-+++.+..-.+..+. ..+..+.++.++-| +|+-=+ .-.+|..|.+--
T Consensus 144 ~~pt~ealveSAl~~a~~~---e~l~f~~i~iS~K~Sdv~~----~v~aYr~lA~~~dyPLHLGvT--EAG~~~~G~VkS 214 (361)
T COG0821 144 GGPTPEALVESALEHAELL---EELGFDDIKVSVKASDVQL----MVAAYRLLAKRCDYPLHLGVT--EAGMGFKGIVKS 214 (361)
T ss_pred cCCCHHHHHHHHHHHHHHH---HHCCCCcEEEEEEcCCHHH----HHHHHHHHHHhcCCCccccee--cccCcccceehH
Confidence 0122233333334455 7766666655554443322 23444445554433 454421 112333366666
Q ss_pred HHHHHHHHHcCCCce--EEEeeecCCChHHHHHHHHHhhcc
Q psy13372 233 AYVFELLAREGYEGY--VGLEYKPQGNTKEGLEEFLKTFDL 271 (273)
Q Consensus 233 ~~i~~~L~~~gy~g~--~~lE~~~~~~~~~~~~~~~~~~~~ 271 (273)
+-=+..|...|.-.. ++|--.|.++..-+.+ -|+..++
T Consensus 215 a~alg~LL~eGIGDTIRVSLt~~P~~EV~V~~e-ILqslgl 254 (361)
T COG0821 215 AAALGALLSEGIGDTIRVSLTADPVEEVKVAQE-ILQSLGL 254 (361)
T ss_pred HHHHHHHHHhcCCceEEEecCCCchhhhHHHHH-HHHHhCc
Confidence 666666666665333 3333334444444444 4554443
No 65
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=96.95 E-value=0.13 Score=44.31 Aligned_cols=192 Identities=14% Similarity=0.120 Sum_probs=108.7
Q ss_pred HHHHHHHHHcCCCeEEecC-------CCCCCCHHHHHHHHHH-cCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWF-------PPVGVTLEQLVAAQTR-HGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQ 95 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~-------~~~~~~~~~~~~~l~~-~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (273)
.+.++.+.++|++.||+.. |.- .+.+.+.+.+.. .+.++..+. .. .+-++
T Consensus 23 ~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~-~d~~~~~~~l~~~~~~~~~~~~----------~~-----------~~dv~ 80 (274)
T cd07938 23 IELIDALSAAGLRRIEVTSFVSPKWVPQM-ADAEEVLAGLPRRPGVRYSALV----------PN-----------LRGAE 80 (274)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCccccccc-CCHHHHHhhcccCCCCEEEEEC----------CC-----------HHHHH
Confidence 3456677888999999982 211 234445544443 233333321 11 12456
Q ss_pred HHHHcCCCeEEecCCCCCC--CCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEE--EEccCCCCCCCCcccCCHHHHHHH
Q psy13372 96 YACALNIPAIHIMSGKTES--SRTQPIASEDPYTTLKENLIYACAELERHSLTA--LIEPVNQHSVPGYYLSSFRVAERL 171 (273)
Q Consensus 96 ~a~~lG~~~i~~~~G~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i--~lE~~~~~~~~~~~~~~~~~~~~l 171 (273)
.|...|++.+.+....-.. ... .....++..+...+.+++|+++|..+ .++..-.. +..-..+++...++
T Consensus 81 ~A~~~g~~~i~i~~~~Sd~~~~~~----~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~--~~~~~~~~~~~~~~ 154 (274)
T cd07938 81 RALAAGVDEVAVFVSASETFSQKN----INCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGC--PYEGEVPPERVAEV 154 (274)
T ss_pred HHHHcCcCEEEEEEecCHHHHHHH----cCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecC--CCCCCCCHHHHHHH
Confidence 6677899988775322110 000 23345778888899999999999765 34421110 12223478888888
Q ss_pred HHHHhhcCCCceeEeeecccccccCCChHHHHHhc---C-CcceeEEeccCCCC--------------------CCC---
Q psy13372 172 IRELRAHGISNVQLQFDFFNAQRICGDLTHTFGAC---R-DLIGHVQIAQAPDR--------------------QEP--- 224 (273)
Q Consensus 172 i~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~---~-~~i~~vHi~d~~~~--------------------~~~--- 224 (273)
++.+.+.+...+.+ -|+.-.... ..+.+.++.+ . +--..+|.+|..|. ...
T Consensus 155 ~~~~~~~Ga~~i~l-~DT~G~~~P-~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id~t~~GlGgc 232 (274)
T cd07938 155 AERLLDLGCDEISL-GDTIGVATP-AQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFDSSVGGLGGC 232 (274)
T ss_pred HHHHHHcCCCEEEE-CCCCCccCH-HHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccCCC
Confidence 86666665443433 355333221 1233334433 2 24467899986421 112
Q ss_pred ----CCCCcccHHHHHHHHHHcCCC
Q psy13372 225 ----HARGEIDYAYVFELLAREGYE 245 (273)
Q Consensus 225 ----g~~G~id~~~i~~~L~~~gy~ 245 (273)
+..|..+.+.++..|+..||+
T Consensus 233 pfa~eraGN~~~E~lv~~L~~~g~~ 257 (274)
T cd07938 233 PFAPGATGNVATEDLVYMLEGMGIE 257 (274)
T ss_pred CCCCCccCCcCHHHHHHHHHhcCCC
Confidence 223999999999999988876
No 66
>PRK00915 2-isopropylmalate synthase; Validated
Probab=96.93 E-value=0.12 Score=48.51 Aligned_cols=192 Identities=11% Similarity=0.039 Sum_probs=110.3
Q ss_pred HHHHHHHHcCCCeEEecCCCC-CCCHHHHHHHHHHc-CCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCC
Q psy13372 25 DKYRVAAELGFRYIESWFPPV-GVTLEQLVAAQTRH-GLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNI 102 (273)
Q Consensus 25 ~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~l~~~-gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~ 102 (273)
+.++.+.++|++.||+.+|.. +.+.+.++++.+.. +.++.++.- .. .+.++++++.....|.
T Consensus 30 ~ia~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~~~~~~~i~a~~r---------~~-------~~did~a~~a~~~~~~ 93 (513)
T PRK00915 30 QIAKQLERLGVDVIEAGFPASSPGDFEAVKRIARTVKNSTVCGLAR---------AV-------KKDIDAAAEALKPAEA 93 (513)
T ss_pred HHHHHHHHcCCCEEEEcCCCCChHHHHHHHHHHhhCCCCEEEEEcc---------CC-------HHHHHHHHHHhhcCCC
Confidence 445566788999999998742 23445555544332 233333321 11 1345566666667888
Q ss_pred CeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCCCc
Q psy13372 103 PAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGISN 182 (273)
Q Consensus 103 ~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 182 (273)
..|.+....-+.... .......++..+.+.+.+++|+++|..+.+-+. +..-.+++-+.++++.+.+.+...
T Consensus 94 ~~v~i~~~~Sd~h~~--~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~e------d~~r~d~~~l~~~~~~~~~~Ga~~ 165 (513)
T PRK00915 94 PRIHTFIATSPIHME--YKLKMSREEVLEMAVEAVKYARSYTDDVEFSAE------DATRTDLDFLCRVVEAAIDAGATT 165 (513)
T ss_pred CEEEEEECCcHHHHH--HHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeC------CCCCCCHHHHHHHHHHHHHcCCCE
Confidence 888776432211000 002334677888888999999999987765553 223456777888885556555333
Q ss_pred eeEeeecccccccCCChHHHHHhc---CC----cceeEEeccCCCC--------------------CCCCC-CCcccHHH
Q psy13372 183 VQLQFDFFNAQRICGDLTHTFGAC---RD----LIGHVQIAQAPDR--------------------QEPHA-RGEIDYAY 234 (273)
Q Consensus 183 ~g~~~D~~h~~~~~~~~~~~i~~~---~~----~i~~vHi~d~~~~--------------------~~~g~-~G~id~~~ 234 (273)
+. +.||.-..... .+.+.++.+ .+ -...+|.++..+. ...|+ .|..+...
T Consensus 166 i~-l~DTvG~~~P~-~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~Vd~Tv~GlGERaGNa~lE~ 243 (513)
T PRK00915 166 IN-IPDTVGYTTPE-EFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQVECTINGIGERAGNAALEE 243 (513)
T ss_pred EE-EccCCCCCCHH-HHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEEEEEeecccccccCccHHH
Confidence 33 33553332221 233333333 23 3467898885321 12332 29999999
Q ss_pred HHHHHHHc
Q psy13372 235 VFELLARE 242 (273)
Q Consensus 235 i~~~L~~~ 242 (273)
++..|...
T Consensus 244 vv~~L~~~ 251 (513)
T PRK00915 244 VVMALKTR 251 (513)
T ss_pred HHHHHHhh
Confidence 99999765
No 67
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=96.90 E-value=0.14 Score=45.31 Aligned_cols=183 Identities=13% Similarity=0.017 Sum_probs=108.4
Q ss_pred CHHHHHHHHHHcCCCeEEecCC---------CC---CCCHHHHHHHHHHc-CCeeEEEecCCccccCCCCCchhHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFP---------PV---GVTLEQLVAAQTRH-GLKQVLINTEVDENFGYAAVKGKESEFRA 88 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~---------~~---~~~~~~~~~~l~~~-gL~i~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (273)
...+.++.+.++|++.||+... ++ ..+.+.++++.+.. +.++..+..+ +.. +
T Consensus 26 ~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~p-----g~~-~--------- 90 (337)
T PRK08195 26 QVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLP-----GIG-T--------- 90 (337)
T ss_pred HHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEecc-----Ccc-c---------
Confidence 4456677778899999999631 11 12334444443432 3444443322 111 1
Q ss_pred HHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHH
Q psy13372 89 SLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVA 168 (273)
Q Consensus 89 ~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~ 168 (273)
.+-++.|...|++.|++.... ++ .+.+.+.+++|++.|..+..-.+. ....+++..
T Consensus 91 --~~dl~~a~~~gvd~iri~~~~----------~e------~~~~~~~i~~ak~~G~~v~~~l~~------a~~~~~e~l 146 (337)
T PRK08195 91 --VDDLKMAYDAGVRVVRVATHC----------TE------ADVSEQHIGLARELGMDTVGFLMM------SHMAPPEKL 146 (337)
T ss_pred --HHHHHHHHHcCCCEEEEEEec----------ch------HHHHHHHHHHHHHCCCeEEEEEEe------ccCCCHHHH
Confidence 123677788899999886421 11 124678889999999765554432 134578888
Q ss_pred HHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhcCC-----cceeEEeccCCCC--------------------CC
Q psy13372 169 ERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACRD-----LIGHVQIAQAPDR--------------------QE 223 (273)
Q Consensus 169 ~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~-----~i~~vHi~d~~~~--------------------~~ 223 (273)
.++++.+.+.+. ..=.+-|+.-.... .++.+.++.+.. --..+|.+|+.+. ..
T Consensus 147 ~~~a~~~~~~Ga-~~i~i~DT~G~~~P-~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G 224 (337)
T PRK08195 147 AEQAKLMESYGA-QCVYVVDSAGALLP-EDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGATRIDGSLAG 224 (337)
T ss_pred HHHHHHHHhCCC-CEEEeCCCCCCCCH-HHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCCEEEecChh
Confidence 888855566653 33344576544332 234444444432 3357899987431 01
Q ss_pred --CCCCCcccHHHHHHHHHHcCCCc
Q psy13372 224 --PHARGEIDYAYVFELLAREGYEG 246 (273)
Q Consensus 224 --~g~~G~id~~~i~~~L~~~gy~g 246 (273)
-+. |..+.+.++..|.+.||+.
T Consensus 225 lG~~a-GN~~tE~lv~~L~~~g~~t 248 (337)
T PRK08195 225 LGAGA-GNTPLEVLVAVLDRMGWET 248 (337)
T ss_pred hcccc-cCccHHHHHHHHHhcCCCC
Confidence 245 9999999999999888764
No 68
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=96.90 E-value=0.2 Score=42.89 Aligned_cols=179 Identities=12% Similarity=0.030 Sum_probs=108.5
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCC-C---------CCHHHHHHHHHHc--CCeeEEEecCCccccCCCCCchhHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPV-G---------VTLEQLVAAQTRH--GLKQVLINTEVDENFGYAAVKGKESEFRAS 89 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~-~---------~~~~~~~~~l~~~--gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (273)
...+.++.+.++|++.||+.+|.. + .+.+.++++.+.. +.++..+.-+. . .
T Consensus 21 ~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~------------~ 83 (266)
T cd07944 21 FVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYG-----N------------D 83 (266)
T ss_pred HHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCC-----C------------C
Confidence 446667788899999999997632 1 1356666666553 56666554221 0 0
Q ss_pred HHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHH
Q psy13372 90 LEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAE 169 (273)
Q Consensus 90 ~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~ 169 (273)
-...++.+...|++.|++.... ..++.+.+.+++|+++|+.+.+-.+. .+..+++...
T Consensus 84 ~~~~l~~a~~~gv~~iri~~~~----------------~~~~~~~~~i~~ak~~G~~v~~~~~~------a~~~~~~~~~ 141 (266)
T cd07944 84 DIDLLEPASGSVVDMIRVAFHK----------------HEFDEALPLIKAIKEKGYEVFFNLMA------ISGYSDEELL 141 (266)
T ss_pred CHHHHHHHhcCCcCEEEEeccc----------------ccHHHHHHHHHHHHHCCCeEEEEEEe------ecCCCHHHHH
Confidence 1235666777899988885311 13566777888899888765555432 2346788888
Q ss_pred HHHHHHhhcCCCceeEeeecccccccCCChHHHHHhc---CC--cceeEEeccCCCC--------------------CCC
Q psy13372 170 RLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGAC---RD--LIGHVQIAQAPDR--------------------QEP 224 (273)
Q Consensus 170 ~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~---~~--~i~~vHi~d~~~~--------------------~~~ 224 (273)
++++.+.+.+...+ ..-|+.-.... ..+.+.++.+ .+ --..+|.+|+.+. ...
T Consensus 142 ~~~~~~~~~g~~~i-~l~DT~G~~~P-~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~ 219 (266)
T cd07944 142 ELLELVNEIKPDVF-YIVDSFGSMYP-EDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGM 219 (266)
T ss_pred HHHHHHHhCCCCEE-EEecCCCCCCH-HHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccC
Confidence 88866666653333 34476444332 2233333333 22 4457898886431 112
Q ss_pred --CCCCcccHHHHHHHHHHc
Q psy13372 225 --HARGEIDYAYVFELLARE 242 (273)
Q Consensus 225 --g~~G~id~~~i~~~L~~~ 242 (273)
+. |..+.+.++..|...
T Consensus 220 G~~a-GN~~~E~~v~~l~~~ 238 (266)
T cd07944 220 GRGA-GNLPTELLLDYLNNK 238 (266)
T ss_pred CCCc-CcHHHHHHHHHHHHh
Confidence 34 889999999988875
No 69
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=96.81 E-value=0.13 Score=48.79 Aligned_cols=199 Identities=9% Similarity=0.067 Sum_probs=107.7
Q ss_pred CHHHHH---HHHHHcCCCeEEecCCCC-CCCHHHHHHHHHHc----CCeeEEEecCCccccCCCCCchhHHHHHHHHHHH
Q psy13372 22 NYLDKY---RVAAELGFRYIESWFPPV-GVTLEQLVAAQTRH----GLKQVLINTEVDENFGYAAVKGKESEFRASLEKT 93 (273)
Q Consensus 22 ~~~~~l---~~~~~~G~~~vEl~~~~~-~~~~~~~~~~l~~~----gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (273)
+.++.+ +.+.++|++.||..+|.. ..+.+.++++++.. +.++..+.. ..+ ..+.++
T Consensus 46 s~e~Ki~ia~~L~~~Gvd~IE~Gfp~~s~~D~e~v~~i~~~~l~~~~~~i~al~~---------~~~-------~did~a 109 (564)
T TIGR00970 46 SPARKRRYFDLLVRIGFKEIEVGFPSASQTDFDFVREIIEQGAIPDDVTIQVLTQ---------SRE-------ELIERT 109 (564)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCCCcEEEEEcC---------Cch-------hhHHHH
Confidence 455554 466788999999998732 24556677766552 233333321 001 124555
Q ss_pred HHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCc----------EEEEccCCCCCCCCcccC
Q psy13372 94 IQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSL----------TALIEPVNQHSVPGYYLS 163 (273)
Q Consensus 94 i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv----------~i~lE~~~~~~~~~~~~~ 163 (273)
++.....+...|.+....-..... .......++.++.+.+.+++++++|. .+-+++ .+.+-.
T Consensus 110 ~~a~~~~~~~~v~i~~~~Sd~h~~--~~l~~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~------Ed~~r~ 181 (564)
T TIGR00970 110 FEALSGAKRATVHFYNATSILFRE--VVFRASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSP------ESFSDT 181 (564)
T ss_pred HHHhcCCCCCEEEEEEcCCHHHHH--HHhCCCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEec------ccCCCC
Confidence 555555555567665332111000 00234567778888888888888765 233333 122234
Q ss_pred CHHHHHHHHHHHhhcCCC-----ceeEeeecccccccCCChHHHHHhc----CCc---ceeEEeccCCCC----------
Q psy13372 164 SFRVAERLIRELRAHGIS-----NVQLQFDFFNAQRICGDLTHTFGAC----RDL---IGHVQIAQAPDR---------- 221 (273)
Q Consensus 164 ~~~~~~~li~~~~~~~~~-----~~g~~~D~~h~~~~~~~~~~~i~~~----~~~---i~~vHi~d~~~~---------- 221 (273)
+++-++++++...+.+.+ ..--+.||--+.... .+.+.++.+ ... ...+|++|.-|.
T Consensus 182 d~~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG~a~P~-~~~~~i~~l~~~~~~~~~~~l~vH~HND~GlAvANslaAv~ 260 (564)
T TIGR00970 182 ELEFAKEVCEAVKEVWAPTPERPIIFNLPATVEMTTPN-VYADSIEYFSTNIAEREKVCLSLHPHNDRGTAVAAAELGFL 260 (564)
T ss_pred CHHHHHHHHHHHHHhCCCccCCeeEEEeccccCccCHH-HHHHHHHHHHHhcCcccCceEEEEECCCCChHHHHHHHHHH
Confidence 677788888554444432 111233543222211 122333333 222 268899874321
Q ss_pred ----------CCCCC-CCcccHHHHHHHHHHcCCC
Q psy13372 222 ----------QEPHA-RGEIDYAYVFELLAREGYE 245 (273)
Q Consensus 222 ----------~~~g~-~G~id~~~i~~~L~~~gy~ 245 (273)
..+|+ .|..+...++-.|...|+.
T Consensus 261 aGa~~v~gt~~G~GERaGNa~le~lv~~L~~~g~~ 295 (564)
T TIGR00970 261 AGADRIEGCLFGNGERTGNVDLVTLALNLYTQGVS 295 (564)
T ss_pred hCCCEEEeecCcCCccccCccHHHHHHHHHhcCCC
Confidence 13565 5999999999999887764
No 70
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=96.78 E-value=0.25 Score=45.70 Aligned_cols=193 Identities=14% Similarity=0.150 Sum_probs=107.5
Q ss_pred CHHHHHHHHHHcCCCeEEecCC--C-------CCCCHHHHHHHHHH-cCCeeEEEecCCccccCCCCCchhHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFP--P-------VGVTLEQLVAAQTR-HGLKQVLINTEVDENFGYAAVKGKESEFRASLE 91 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~--~-------~~~~~~~~~~~l~~-~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (273)
+....+..+.++||+.||+|+. + .+.+.+.++.+.+. .+..+.++.... ...|....+ -+-++
T Consensus 26 dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~-N~~G~~~~~------dDvv~ 98 (467)
T PRK14041 26 DMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQ-NLVGYRHYA------DDVVE 98 (467)
T ss_pred HHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccc-cccCccccc------chhhH
Confidence 3445566778889999999854 1 11223444444333 345555543210 011221112 13455
Q ss_pred HHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEE--EccCCCCCCCCcccCCHHHHH
Q psy13372 92 KTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTAL--IEPVNQHSVPGYYLSSFRVAE 169 (273)
Q Consensus 92 ~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~--lE~~~~~~~~~~~~~~~~~~~ 169 (273)
..++.|...|+..+++.... ++ ++.+++.++.|+++|..+. +-.. . ....+.+-..
T Consensus 99 ~fv~~A~~~Gvd~irif~~l----------nd------~~n~~~~i~~ak~~G~~v~~~i~~t-~-----~p~~t~e~~~ 156 (467)
T PRK14041 99 LFVKKVAEYGLDIIRIFDAL----------ND------IRNLEKSIEVAKKHGAHVQGAISYT-V-----SPVHTLEYYL 156 (467)
T ss_pred HHHHHHHHCCcCEEEEEEeC----------CH------HHHHHHHHHHHHHCCCEEEEEEEec-c-----CCCCCHHHHH
Confidence 67888888999998886421 11 3456777788888886433 2111 0 1134677778
Q ss_pred HHHHHHhhcCCCceeEeeecccccccCC--ChHHHHHhcCCcceeEEeccCCCC----------------------CCCC
Q psy13372 170 RLIRELRAHGISNVQLQFDFFNAQRICG--DLTHTFGACRDLIGHVQIAQAPDR----------------------QEPH 225 (273)
Q Consensus 170 ~li~~~~~~~~~~~g~~~D~~h~~~~~~--~~~~~i~~~~~~i~~vHi~d~~~~----------------------~~~g 225 (273)
++++++.+.+...+.++ |+.-...... .+...++.-.+--.++|.+|+.|. -.+|
T Consensus 157 ~~a~~l~~~Gad~I~i~-Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~~~g~g 235 (467)
T PRK14041 157 EFARELVDMGVDSICIK-DMAGLLTPKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAGADMFDTAISPFSMG 235 (467)
T ss_pred HHHHHHHHcCCCEEEEC-CccCCcCHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhCCCEEEeeccccCCC
Confidence 88866666654433332 5533322111 122333332334468888886431 1346
Q ss_pred CCCcccHHHHHHHHHHcCCC
Q psy13372 226 ARGEIDYAYVFELLAREGYE 245 (273)
Q Consensus 226 ~~G~id~~~i~~~L~~~gy~ 245 (273)
. |..+...++..|+..||+
T Consensus 236 a-gN~atE~lv~~L~~~g~~ 254 (467)
T PRK14041 236 T-SQPPFESMYYAFRENGKE 254 (467)
T ss_pred C-CChhHHHHHHHHHhcCCC
Confidence 7 899999999999988876
No 71
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=96.72 E-value=0.12 Score=48.62 Aligned_cols=201 Identities=15% Similarity=0.115 Sum_probs=112.7
Q ss_pred HHHHHHHHHcCCCeEEecCCCC-CCCHHHHHHHHHH--cCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHc
Q psy13372 24 LDKYRVAAELGFRYIESWFPPV-GVTLEQLVAAQTR--HGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACAL 100 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~l~~--~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l 100 (273)
.+.++.+.++|++.||+.+|.. ..+.+.++.+.+. .+.++..+.... ..+.. ....+.++.+...
T Consensus 30 l~ia~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~~l~~~~i~~~~~~~--~~~i~----------~~~d~~~e~~~~~ 97 (524)
T PRK12344 30 LRIARKLDELGVDYIEGGWPGSNPKDTEFFKRAKELKLKHAKLAAFGSTR--RAGVS----------AEEDPNLQALLDA 97 (524)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCChhHHHHHHHHHHhCCCCcEEEEEeecc--ccCCC----------cccHHHHHHHHhC
Confidence 3445566888999999987742 1233344443331 134555443211 00010 0112345667778
Q ss_pred CCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCC
Q psy13372 101 NIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGI 180 (273)
Q Consensus 101 G~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 180 (273)
|++.|++....-..... .......++.++.+.+.+++|+++|..+.+-+...+ ..+-.+++-+.++++++.+.+.
T Consensus 98 g~~~i~i~~~~Sd~h~~--~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~---Da~r~d~~~l~~~~~~~~~~Ga 172 (524)
T PRK12344 98 GTPVVTIFGKSWDLHVT--EALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFF---DGYKANPEYALATLKAAAEAGA 172 (524)
T ss_pred CCCEEEEEECCCHHHHH--HHcCCCHHHHHHHHHHHHHHHHHcCCeEEEcccccc---ccccCCHHHHHHHHHHHHhCCC
Confidence 99998886432111000 002234567888899999999999988776553211 1234567778888855566554
Q ss_pred CceeEeeecccccccCCChHHHHHhc---CCcceeEEeccCCCC--------------------CCC--CCCCcccHHHH
Q psy13372 181 SNVQLQFDFFNAQRICGDLTHTFGAC---RDLIGHVQIAQAPDR--------------------QEP--HARGEIDYAYV 235 (273)
Q Consensus 181 ~~~g~~~D~~h~~~~~~~~~~~i~~~---~~~i~~vHi~d~~~~--------------------~~~--g~~G~id~~~i 235 (273)
..+. +.|+.-..... .+.+.++.+ .+-...+|.++..|. ... +. |..+...+
T Consensus 173 d~i~-l~DTvG~~~P~-~v~~li~~l~~~~~v~i~~H~HND~GlA~ANslaAi~aGa~~Vd~Tl~GlGERa-GNa~lE~l 249 (524)
T PRK12344 173 DWVV-LCDTNGGTLPH-EVAEIVAEVRAAPGVPLGIHAHNDSGCAVANSLAAVEAGARQVQGTINGYGERC-GNANLCSI 249 (524)
T ss_pred CeEE-EccCCCCcCHH-HHHHHHHHHHHhcCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccccc-cCcCHHHH
Confidence 4444 56774443321 233333333 244567999885331 122 34 89999999
Q ss_pred HHHHHH-cCC
Q psy13372 236 FELLAR-EGY 244 (273)
Q Consensus 236 ~~~L~~-~gy 244 (273)
+-.|.. .|+
T Consensus 250 v~~L~~~~g~ 259 (524)
T PRK12344 250 IPNLQLKMGY 259 (524)
T ss_pred HHHHHhccCC
Confidence 988874 465
No 72
>PRK09389 (R)-citramalate synthase; Provisional
Probab=96.69 E-value=0.19 Score=46.91 Aligned_cols=193 Identities=15% Similarity=0.084 Sum_probs=107.3
Q ss_pred HHHHHHHHHcCCCeEEecCCC-CCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCC
Q psy13372 24 LDKYRVAAELGFRYIESWFPP-VGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNI 102 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~-~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~ 102 (273)
.+.++.+.++|++.||+.+|. .+.+.+.++.+. +.++... +..+. . .. ..-++.+...|+
T Consensus 27 ~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~-~~~~~~~-i~a~~-----r-~~-----------~~di~~a~~~g~ 87 (488)
T PRK09389 27 LEIARKLDELGVDVIEAGSAITSEGEREAIKAVT-DEGLNAE-ICSFA-----R-AV-----------KVDIDAALECDV 87 (488)
T ss_pred HHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHH-hcCCCcE-EEeec-----c-cC-----------HHHHHHHHhCCc
Confidence 444566788899999999873 223445555544 3455422 22111 0 10 223556667899
Q ss_pred CeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCCCc
Q psy13372 103 PAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGISN 182 (273)
Q Consensus 103 ~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 182 (273)
+.|++....-+.... .......++.++.+.+.+++|+++|..+.+=+.. ..-.+++-+.++++.+.+.+...
T Consensus 88 ~~v~i~~~~Sd~h~~--~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed------~~r~~~~~l~~~~~~~~~~Ga~~ 159 (488)
T PRK09389 88 DSVHLVVPTSDLHIE--YKLKKTREEVLETAVEAVEYAKDHGLIVELSGED------ASRADLDFLKELYKAGIEAGADR 159 (488)
T ss_pred CEEEEEEccCHHHHH--HHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEee------CCCCCHHHHHHHHHHHHhCCCCE
Confidence 988876432211000 0022345677777888889999999654443321 23446777788885555555444
Q ss_pred eeEeeecccccccCCChHHHHHhcC---CcceeEEeccCCCC--------------------CCCCC-CCcccHHHHHHH
Q psy13372 183 VQLQFDFFNAQRICGDLTHTFGACR---DLIGHVQIAQAPDR--------------------QEPHA-RGEIDYAYVFEL 238 (273)
Q Consensus 183 ~g~~~D~~h~~~~~~~~~~~i~~~~---~~i~~vHi~d~~~~--------------------~~~g~-~G~id~~~i~~~ 238 (273)
+.+ .|+.-.... ..+.+.++.+. +-...+|.++..+. ...|+ .|..+...++..
T Consensus 160 i~l-~DTvG~~~P-~~~~~lv~~l~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~Vd~Ti~GiGERaGNa~lE~lv~~ 237 (488)
T PRK09389 160 ICF-CDTVGILTP-EKTYELFKRLSELVKGPVSIHCHNDFGLAVANTLAALAAGADQVHVTINGIGERAGNASLEEVVMA 237 (488)
T ss_pred EEE-ecCCCCcCH-HHHHHHHHHHHhhcCCeEEEEecCCccHHHHHHHHHHHcCCCEEEEEcccccccccCccHHHHHHH
Confidence 433 455333222 12334444443 33457898875321 12332 399999999999
Q ss_pred HHHc-CCC
Q psy13372 239 LARE-GYE 245 (273)
Q Consensus 239 L~~~-gy~ 245 (273)
|+.. |++
T Consensus 238 L~~~~g~~ 245 (488)
T PRK09389 238 LKHLYDVE 245 (488)
T ss_pred HHhhcCCC
Confidence 9763 554
No 73
>PF06134 RhaA: L-rhamnose isomerase (RhaA); InterPro: IPR009308 This family consists of several bacterial L-rhamnose isomerase proteins (5.3.1.14 from EC). This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including Escherichia coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. ; GO: 0008740 L-rhamnose isomerase activity, 0030145 manganese ion binding, 0019299 rhamnose metabolic process; PDB: 1DE5_A 1D8W_D 1DE6_B 3P14_B 3UU0_B.
Probab=96.57 E-value=0.02 Score=50.43 Aligned_cols=192 Identities=14% Similarity=0.123 Sum_probs=101.3
Q ss_pred HHHHHHHHHHcCCeeEEEec--CCc--c--ccCC-CCCchhHHHHHHHHHHHHHHHHHcC----CCe-EEecCCCCCCCC
Q psy13372 49 LEQLVAAQTRHGLKQVLINT--EVD--E--NFGY-AAVKGKESEFRASLEKTIQYACALN----IPA-IHIMSGKTESSR 116 (273)
Q Consensus 49 ~~~~~~~l~~~gL~i~~~~~--~~~--~--~~~~-~~~~~~~~~~~~~~~~~i~~a~~lG----~~~-i~~~~G~~~~~~ 116 (273)
.+.+.+..++.|+.+- ++. +.. . .+.+ +++++.|+..++..+++++++..+| .++ +.++...--.
T Consensus 114 F~~Wv~wAke~glgLd-fNpt~Fshp~~~dg~TLs~pD~~IR~fwI~H~~~cr~I~~~~G~~lg~~cv~niWipDG~k-- 190 (417)
T PF06134_consen 114 FEKWVDWAKENGLGLD-FNPTFFSHPKAKDGLTLSHPDEEIRDFWIEHGKACRRIAEYFGSELGSPCVMNIWIPDGTK-- 190 (417)
T ss_dssp GHHHHHHHHHCT-EEE-EE---SSSGGGTTS-STT-SSHHHHHHHHHHHHHHHHHHHHHHHHHTS-EEEEEE---EES--
T ss_pred HHHHHHHHHHcCCCcc-cCccccCCccccCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCcceeeecCCCCC--
Confidence 4789999999999985 553 221 1 1222 3689999999999999999987655 444 4665422101
Q ss_pred CCCCCCcchHHHHHHHHHHHHHH-HhhCCcEEEEccCCCCCC-CCcccCCHHHHHHHHHHHhhcCCCceeEeeecccccc
Q psy13372 117 TQPIASEDPYTTLKENLIYACAE-LERHSLTALIEPVNQHSV-PGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQR 194 (273)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~~l~~~-a~~~gv~i~lE~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~ 194 (273)
+.|.+.-...+++.++|.++... ..+..+.-++|.--.... ..+-+.+.+=..-+. +. .+.-+|+|+||++-
T Consensus 191 d~p~Dr~~~R~RL~eSLdeI~a~~~d~~~~~d~vEsKlFgiG~EsytVgSheFy~~YA-----~~-~~~~~~lD~GHfhP 264 (417)
T PF06134_consen 191 DPPQDRLRPRQRLKESLDEIFAEKIDPKYVLDAVESKLFGIGFESYTVGSHEFYMGYA-----LG-RNKMVCLDTGHFHP 264 (417)
T ss_dssp S--S-SHHHHHHHHHHHHHHTCS---TTTEEEEEE--S-BTTBSSEESS-HHHHHHHH-----HH-CT-EEEEETTSSST
T ss_pred CCCcccchHHHHHHHHHHHHHHhhcCHHhhhhhhheeccccceeeEecCchHHHHHHh-----hc-CCcEEEEeCCCCCC
Confidence 11222444567888888887643 344557778996322100 111233333333333 22 55679999999975
Q ss_pred cCCChHHHHHhc---CCcceeEEeccC---CCCCCCCCCCcccHHHHHHHHHHcCC-Cc-eEEEeee
Q psy13372 195 ICGDLTHTFGAC---RDLIGHVQIAQA---PDRQEPHARGEIDYAYVFELLAREGY-EG-YVGLEYK 253 (273)
Q Consensus 195 ~~~~~~~~i~~~---~~~i~~vHi~d~---~~~~~~g~~G~id~~~i~~~L~~~gy-~g-~~~lE~~ 253 (273)
++++.+-|..+ .+.+ .+|++-. ++-+-.+. .+ ....|++.+-+.|. +. .+.+.++
T Consensus 265 -tE~Isdkisa~Llf~~~l-~lHvsRpvrWDSDHVV~~-dD-el~~I~~EiVR~~~ldrv~igLDfF 327 (417)
T PF06134_consen 265 -TENISDKISALLLFVDEL-ALHVSRPVRWDSDHVVIF-DD-ELFEIAKEIVRNDALDRVHIGLDFF 327 (417)
T ss_dssp -T--CHHHHHHHCTTSS-E-EEEE-B-SSSS--B---S-SH-HHHHHHHHHHHTTTTTTEEEEE---
T ss_pred -CCcHHHHHHHHHHhCCCe-eEeecCCccccCCeEEee-cH-HHHHHHHHHHhcCcccceeeehhhh
Confidence 56666655544 5666 5999852 11123333 22 56677777777764 44 3667766
No 74
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=96.54 E-value=0.63 Score=43.36 Aligned_cols=194 Identities=11% Similarity=0.100 Sum_probs=105.9
Q ss_pred CHHHHHHHHHHcCCCeEEecCC--C-------CCCCHHHHHHHHHHc-CCeeEEEecCCccccCCCCCchhHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFP--P-------VGVTLEQLVAAQTRH-GLKQVLINTEVDENFGYAAVKGKESEFRASLE 91 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~--~-------~~~~~~~~~~~l~~~-gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (273)
+...+++.+.+.||..||.|+. + .+.+-+.++.+.+.. +..+.++.- ...-.|....++ +-.+
T Consensus 28 d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~R-g~N~vGy~~y~d------dvv~ 100 (499)
T PRK12330 28 DMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLR-GQNLLGYRHYED------EVVD 100 (499)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEc-ccccCCccCcch------hHHH
Confidence 3445566677899999999943 1 122223333332221 133333321 101122222221 3455
Q ss_pred HHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEE--EEccCCCCCCCCcccCCHHHHH
Q psy13372 92 KTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTA--LIEPVNQHSVPGYYLSSFRVAE 169 (273)
Q Consensus 92 ~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i--~lE~~~~~~~~~~~~~~~~~~~ 169 (273)
..++.|...|+..+++....- -++.++...+.+++.|... .|--+. ....+++...
T Consensus 101 ~fv~~a~~~Gidi~RIfd~ln----------------dv~nl~~ai~~vk~ag~~~~~~i~yt~------sp~~t~e~~~ 158 (499)
T PRK12330 101 RFVEKSAENGMDVFRVFDALN----------------DPRNLEHAMKAVKKVGKHAQGTICYTV------SPIHTVEGFV 158 (499)
T ss_pred HHHHHHHHcCCCEEEEEecCC----------------hHHHHHHHHHHHHHhCCeEEEEEEEec------CCCCCHHHHH
Confidence 688888899999999864311 0255666666666666533 221111 1245788888
Q ss_pred HHHHHHhhcCCCceeEeeecccccccC--CChHHHHHhcC--CcceeEEeccCCCC---------------------C-C
Q psy13372 170 RLIRELRAHGISNVQLQFDFFNAQRIC--GDLTHTFGACR--DLIGHVQIAQAPDR---------------------Q-E 223 (273)
Q Consensus 170 ~li~~~~~~~~~~~g~~~D~~h~~~~~--~~~~~~i~~~~--~~i~~vHi~d~~~~---------------------~-~ 223 (273)
++++++.+.+...+.+ -|+.-..... .++...+++.. +--.++|.+|+.|. . .
T Consensus 159 ~~a~~l~~~Gad~I~I-kDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDtai~Glg 237 (499)
T PRK12330 159 EQAKRLLDMGADSICI-KDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTAISSMS 237 (499)
T ss_pred HHHHHHHHcCCCEEEe-CCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEeeccccc
Confidence 8887767665443333 2553332211 12233333332 34468899886432 1 2
Q ss_pred CCCCCcccHHHHHHHHHHcCCCc
Q psy13372 224 PHARGEIDYAYVFELLAREGYEG 246 (273)
Q Consensus 224 ~g~~G~id~~~i~~~L~~~gy~g 246 (273)
-+. |..+...++..|+..||+-
T Consensus 238 ~~a-Gn~atE~vv~~L~~~g~~t 259 (499)
T PRK12330 238 LGP-GHNPTESLVEMLEGTGYTT 259 (499)
T ss_pred ccc-cchhHHHHHHHHHhcCCCC
Confidence 245 9999999999999988863
No 75
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=96.54 E-value=0.44 Score=41.17 Aligned_cols=193 Identities=12% Similarity=0.113 Sum_probs=98.0
Q ss_pred HHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCC-----eeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHH
Q psy13372 25 DKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGL-----KQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACA 99 (273)
Q Consensus 25 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL-----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 99 (273)
+.++.+.++|++.||+.+|.-.....++.+.+.+.++ ++..+.. ..+ ..++++++..
T Consensus 27 ~ia~~L~~~Gv~~IE~gfP~~~~~e~e~~~~i~~~~~~~~~~~~~al~r---------~~~-------~die~a~~~~-- 88 (284)
T cd07942 27 RFFKLLVKIGFKEIEVGFPSASQTDFDFVRELIEEDLIPDDVTIQVLTQ---------ARE-------DLIERTFEAL-- 88 (284)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHccCCCCCCEEEEEcC---------CCh-------hhHHHHHHHh--
Confidence 4455678889999999988431222244444433333 3333211 001 1233333322
Q ss_pred cCCC--eEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcE-------EEEccCCCCCCCCcccCCHHHHHH
Q psy13372 100 LNIP--AIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLT-------ALIEPVNQHSVPGYYLSSFRVAER 170 (273)
Q Consensus 100 lG~~--~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-------i~lE~~~~~~~~~~~~~~~~~~~~ 170 (273)
.|++ .|.+....-..... .......++.++.+.+++++|+++|++ +-++. .+..-.+++-..+
T Consensus 89 ~~~~~~~v~i~~~~Sd~h~~--~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~------EDasr~~~~~l~~ 160 (284)
T cd07942 89 RGAKKAIVHLYNATSPLQRR--VVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSP------ESFSDTELDFALE 160 (284)
T ss_pred CCCCCCEEEEEEcCCHHHHH--HHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECC------ccCCCCCHHHHHH
Confidence 3554 46554321110000 002345778888999999999998853 33332 1222345677788
Q ss_pred HHHHHhhc---CCC---ceeEeeecccccccCCChHHHHHhc----CC---cceeEEeccCCCC----------------
Q psy13372 171 LIRELRAH---GIS---NVQLQFDFFNAQRICGDLTHTFGAC----RD---LIGHVQIAQAPDR---------------- 221 (273)
Q Consensus 171 li~~~~~~---~~~---~~g~~~D~~h~~~~~~~~~~~i~~~----~~---~i~~vHi~d~~~~---------------- 221 (273)
+++.+.+. +.. .+.+ -||--..... .+.+.++.+ .. -...+|++|..+.
T Consensus 161 ~~~~~~~~~~~g~~~~~~i~l-aDTvG~a~P~-~v~~~~~~l~~~~~~~~~~~~~~H~Hnd~G~a~AN~laA~~aG~~~i 238 (284)
T cd07942 161 VCEAVIDVWQPTPENKIILNL-PATVEVATPN-VYADQIEWFCRNLSRRESVIISLHPHNDRGTGVAAAELALLAGADRV 238 (284)
T ss_pred HHHHHHHhhcCCCCcceEEEc-cccccccCHH-HHHHHHHHHHHhcCCCCCceEEEEecCCCchHHHHHHHHHHhCCCEE
Confidence 88443332 101 2322 3542222211 122333333 21 1257898885321
Q ss_pred ----CCCCC-CCcccHHHHHHHHHHcCCC
Q psy13372 222 ----QEPHA-RGEIDYAYVFELLAREGYE 245 (273)
Q Consensus 222 ----~~~g~-~G~id~~~i~~~L~~~gy~ 245 (273)
..+|. .|.++.+.++..|...|++
T Consensus 239 d~~~~g~GeRaGN~~~E~lv~~l~~~g~~ 267 (284)
T cd07942 239 EGTLFGNGERTGNVDLVTLALNLYSQGVD 267 (284)
T ss_pred EeeCccCCccccchhHHHHHHHHHhcCCC
Confidence 13565 5999999999999887765
No 76
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=96.51 E-value=0.55 Score=43.35 Aligned_cols=190 Identities=15% Similarity=0.160 Sum_probs=106.4
Q ss_pred CHHHHHHHHHHcCCCeEEecCC--CC-------CCC---HHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFP--PV-------GVT---LEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRAS 89 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~--~~-------~~~---~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (273)
+...++..+.+.||..||.|+. ++ +.+ .+.+++.+.+..+....-+. .-.|....|+ +-
T Consensus 36 d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~---n~vgy~~ypd------dv 106 (468)
T PRK12581 36 DMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQ---NLLGYRHYAD------DI 106 (468)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeeccc---cccCccCCcc------hH
Confidence 3445566778889999999953 21 122 35555555554444332221 1122222222 23
Q ss_pred HHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcE----EEEccCCCCCCCCcccCCH
Q psy13372 90 LEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLT----ALIEPVNQHSVPGYYLSSF 165 (273)
Q Consensus 90 ~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~----i~lE~~~~~~~~~~~~~~~ 165 (273)
.+..++.|..-|+..+++...-. -++.++..++.+++.|.. ++..- ....+.
T Consensus 107 v~~fv~~a~~~Gidi~Rifd~ln----------------d~~n~~~ai~~ak~~G~~~~~~i~yt~--------sp~~t~ 162 (468)
T PRK12581 107 VDKFISLSAQNGIDVFRIFDALN----------------DPRNIQQALRAVKKTGKEAQLCIAYTT--------SPVHTL 162 (468)
T ss_pred HHHHHHHHHHCCCCEEEEcccCC----------------CHHHHHHHHHHHHHcCCEEEEEEEEEe--------CCcCcH
Confidence 45568889999999998865211 134556666777777754 23322 113355
Q ss_pred HHHHHHHHHHhhcCCCceeEeeecccccccCC--ChHHHHHhcCCcceeEEeccCCCC----------------------
Q psy13372 166 RVAERLIRELRAHGISNVQLQFDFFNAQRICG--DLTHTFGACRDLIGHVQIAQAPDR---------------------- 221 (273)
Q Consensus 166 ~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~--~~~~~i~~~~~~i~~vHi~d~~~~---------------------- 221 (273)
+-..++++++.+.+...+.+ -|+.-...... ++...+++..+--.++|.+|+.|.
T Consensus 163 ~y~~~~a~~l~~~Gad~I~I-kDtaG~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ai~g 241 (468)
T PRK12581 163 NYYLSLVKELVEMGADSICI-KDMAGILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAVEAGADRIDTALSP 241 (468)
T ss_pred HHHHHHHHHHHHcCCCEEEE-CCCCCCcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEeeccc
Confidence 55677775556665333322 25543332211 233334443334467888876431
Q ss_pred CCCCCCCcccHHHHHHHHHHcCCCc
Q psy13372 222 QEPHARGEIDYAYVFELLAREGYEG 246 (273)
Q Consensus 222 ~~~g~~G~id~~~i~~~L~~~gy~g 246 (273)
-..|. |..+...++..|+..||+-
T Consensus 242 ~g~ga-gN~~tE~lv~~L~~~g~~t 265 (468)
T PRK12581 242 FSEGT-SQPATESMYLALKEAGYDI 265 (468)
T ss_pred cCCCc-CChhHHHHHHHHHhcCCCC
Confidence 13467 9999999999999998873
No 77
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=96.51 E-value=0.49 Score=45.11 Aligned_cols=193 Identities=15% Similarity=0.158 Sum_probs=110.8
Q ss_pred CHHHHHHHHHHcCCCeEEecCC--------CCCCCH-HHHHHHHHH-cCCeeEEEecCCccccCCCCCchhHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFP--------PVGVTL-EQLVAAQTR-HGLKQVLINTEVDENFGYAAVKGKESEFRASLE 91 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~--------~~~~~~-~~~~~~l~~-~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (273)
+....+..+.++||+.||+|+. +-..+. +.++.+.+. .+..+.++.-. ....|....|+ +-.+
T Consensus 22 dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg-~N~~G~~~ypd------dvv~ 94 (582)
T TIGR01108 22 DMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRG-QNLLGYRHYAD------DVVE 94 (582)
T ss_pred HHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEcc-ccccccccCch------hhHH
Confidence 3455566778889999999832 211233 444444331 34566655321 01122322222 2355
Q ss_pred HHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEE--EccCCCCCCCCcccCCHHHHH
Q psy13372 92 KTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTAL--IEPVNQHSVPGYYLSSFRVAE 169 (273)
Q Consensus 92 ~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~--lE~~~~~~~~~~~~~~~~~~~ 169 (273)
..++.|...|++.+++.... ++ .+.+....+.|+++|..+. +.-.. +...+.+...
T Consensus 95 ~~v~~a~~~Gvd~irif~~l----------nd------~~n~~~~i~~ak~~G~~v~~~i~~t~------~p~~~~~~~~ 152 (582)
T TIGR01108 95 RFVKKAVENGMDVFRIFDAL----------ND------PRNLQAAIQAAKKHGAHAQGTISYTT------SPVHTLETYL 152 (582)
T ss_pred HHHHHHHHCCCCEEEEEEec----------Cc------HHHHHHHHHHHHHcCCEEEEEEEecc------CCCCCHHHHH
Confidence 67888889999999886321 11 1457777789999996543 32211 1135788888
Q ss_pred HHHHHHhhcCCCceeEeeecccccccCCChHHHHHhc---CCcceeEEeccCCCC--------------------CCC--
Q psy13372 170 RLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGAC---RDLIGHVQIAQAPDR--------------------QEP-- 224 (273)
Q Consensus 170 ~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~---~~~i~~vHi~d~~~~--------------------~~~-- 224 (273)
++++++.+.+...+.++ |+.-.... ..+.+.++.+ .+--.++|.+|+.|. ...
T Consensus 153 ~~~~~~~~~Gad~I~i~-Dt~G~~~P-~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAveaGa~~vd~ai~GlG~ 230 (582)
T TIGR01108 153 DLAEELLEMGVDSICIK-DMAGILTP-KAAYELVSALKKRFGLPVHLHSHATTGMAEMALLKAIEAGADGIDTAISSMSG 230 (582)
T ss_pred HHHHHHHHcCCCEEEEC-CCCCCcCH-HHHHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCEEEeccccccc
Confidence 99977676664433332 55333221 1233333333 333468999986432 111
Q ss_pred CCCCcccHHHHHHHHHHcCCCc
Q psy13372 225 HARGEIDYAYVFELLAREGYEG 246 (273)
Q Consensus 225 g~~G~id~~~i~~~L~~~gy~g 246 (273)
+. |..+...++..|+..||+-
T Consensus 231 ~t-Gn~~le~vv~~L~~~g~~t 251 (582)
T TIGR01108 231 GT-SHPPTETMVAALRGTGYDT 251 (582)
T ss_pred cc-cChhHHHHHHHHHhcCCCc
Confidence 35 9999999999999888763
No 78
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=96.36 E-value=0.23 Score=41.27 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=38.7
Q ss_pred HHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEE
Q psy13372 93 TIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTAL 148 (273)
Q Consensus 93 ~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~ 148 (273)
.++.|+++|+.+|-+|+|...... .+...+.-.+.+...+.+|.+.|+.+.
T Consensus 136 qi~~A~~~GAd~VELhTG~YA~a~-----~~~~~~~el~~i~~aa~~A~~lGL~Vn 186 (237)
T TIGR00559 136 QISAAAEVGADRIEIHTGPYANAY-----NKKEMAEELQRIVKASVHAHSLGLKVN 186 (237)
T ss_pred HHHHHHHhCcCEEEEechhhhcCC-----CchhHHHHHHHHHHHHHHHHHcCCEEe
Confidence 588999999999999999874432 122223347889999999999998774
No 79
>PLN02321 2-isopropylmalate synthase
Probab=96.33 E-value=0.56 Score=45.01 Aligned_cols=199 Identities=14% Similarity=0.075 Sum_probs=105.6
Q ss_pred CHHHH---HHHHHHcCCCeEEecCCC-CCCCHHHHHHHHHH--cCCe----eEEEecCCccccCCCCCchhHHHHHHHHH
Q psy13372 22 NYLDK---YRVAAELGFRYIESWFPP-VGVTLEQLVAAQTR--HGLK----QVLINTEVDENFGYAAVKGKESEFRASLE 91 (273)
Q Consensus 22 ~~~~~---l~~~~~~G~~~vEl~~~~-~~~~~~~~~~~l~~--~gL~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (273)
+.++. ++.+.++|++.||..+|. .+.+.+.++.+.+. .++. +..++.+. . .. .+.++
T Consensus 106 s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~-----r-a~-------~~dId 172 (632)
T PLN02321 106 TSKEKLDIARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLS-----R-CN-------KKDID 172 (632)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeeeh-----h-cc-------HHhHH
Confidence 55555 456678899999998874 22445556665444 1111 11122110 0 11 12334
Q ss_pred HHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCc-EEEEccCCCCCCCCcccCCHHHHHH
Q psy13372 92 KTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSL-TALIEPVNQHSVPGYYLSSFRVAER 170 (273)
Q Consensus 92 ~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~i~lE~~~~~~~~~~~~~~~~~~~~ 170 (273)
++++.....+...|.+....-+.... .......++.++.+.+.+++|+++|. .+.+=+ ++..-.+++-+.+
T Consensus 173 ~A~~al~~a~~~~I~i~~stSd~h~~--~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~------EDa~rtd~d~l~~ 244 (632)
T PLN02321 173 AAWEAVKHAKRPRIHTFIATSEIHME--HKLRKTPDEVVEIARDMVKYARSLGCEDVEFSP------EDAGRSDPEFLYR 244 (632)
T ss_pred HHHHHhcCCCCCEEEEEEcCCHHHHH--HHhCCCHHHHHHHHHHHHHHHHHcCCceEEEec------ccCCCCCHHHHHH
Confidence 45543222233356554322111000 00234577888889999999999986 344433 2234567788888
Q ss_pred HHHHHhhcCCCceeEeeecccccccCCChHHHHHhc---CC----cceeEEeccCCCC--------------------CC
Q psy13372 171 LIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGAC---RD----LIGHVQIAQAPDR--------------------QE 223 (273)
Q Consensus 171 li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~---~~----~i~~vHi~d~~~~--------------------~~ 223 (273)
+++.+.+.+...+.+ .||.-..... .+.+.++.+ .+ -...+|.+|..|. ..
T Consensus 245 ~~~~a~~aGa~~I~L-~DTvG~~~P~-~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv~AGA~~Vd~TinG 322 (632)
T PLN02321 245 ILGEVIKAGATTLNI-PDTVGYTLPS-EFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGAHAGARQVEVTING 322 (632)
T ss_pred HHHHHHHcCCCEEEe-cccccCCCHH-HHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 885555555333433 3553332221 233444443 22 2368999885321 12
Q ss_pred CCC-CCcccHHHHHHHHHHcC
Q psy13372 224 PHA-RGEIDYAYVFELLAREG 243 (273)
Q Consensus 224 ~g~-~G~id~~~i~~~L~~~g 243 (273)
.|+ .|..+...+.-.|+..+
T Consensus 323 lGERaGNa~LEevv~~L~~~~ 343 (632)
T PLN02321 323 IGERAGNASLEEVVMAIKCRG 343 (632)
T ss_pred ccccccCccHHHHHHHHHhcc
Confidence 332 39999999999998755
No 80
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=96.31 E-value=0.77 Score=43.82 Aligned_cols=194 Identities=15% Similarity=0.131 Sum_probs=110.2
Q ss_pred CHHHHHHHHHHcCCCeEEecCC--CC-------CCC---HHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFP--PV-------GVT---LEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRAS 89 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~--~~-------~~~---~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (273)
++...+..+.+.||..+|.|.. ++ +.+ .+.+++.+.+..|+...=+. .-+|..+.|+ +-
T Consensus 27 d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~---N~vGy~~~~d------~v 97 (596)
T PRK14042 27 DMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQ---NLLGYRNYAD------DV 97 (596)
T ss_pred HHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccc---cccccccCCh------HH
Confidence 4555666778899999999963 21 122 34555555444344322111 1122222232 35
Q ss_pred HHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHH
Q psy13372 90 LEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAE 169 (273)
Q Consensus 90 ~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~ 169 (273)
++..++.|...|+..++++..-. -++.++...+.+++.|....-- +.. -.....|++...
T Consensus 98 v~~~v~~a~~~Gidv~Rifd~ln----------------d~~n~~~~i~~~k~~G~~~~~~-i~y---t~sp~~t~e~~~ 157 (596)
T PRK14042 98 VRAFVKLAVNNGVDVFRVFDALN----------------DARNLKVAIDAIKSHKKHAQGA-ICY---TTSPVHTLDNFL 157 (596)
T ss_pred HHHHHHHHHHcCCCEEEEcccCc----------------chHHHHHHHHHHHHcCCEEEEE-EEe---cCCCCCCHHHHH
Confidence 66788999999999999964211 1445666677778788532211 000 012367888888
Q ss_pred HHHHHHhhcCCCceeEeeecccccccC--CChHHHHHhcCCcceeEEeccCCCC--------------------CC--CC
Q psy13372 170 RLIRELRAHGISNVQLQFDFFNAQRIC--GDLTHTFGACRDLIGHVQIAQAPDR--------------------QE--PH 225 (273)
Q Consensus 170 ~li~~~~~~~~~~~g~~~D~~h~~~~~--~~~~~~i~~~~~~i~~vHi~d~~~~--------------------~~--~g 225 (273)
++++++.+.+...+.+ -|+.-..... ..+...+++..+--.++|.+|+.|. .. -+
T Consensus 158 ~~ak~l~~~Gad~I~I-kDtaG~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAieaGad~iD~ai~glGg~ 236 (596)
T PRK14042 158 ELGKKLAEMGCDSIAI-KDMAGLLTPTVTVELYAGLKQATGLPVHLHSHSTSGLASICHYEAVLAGCNHIDTAISSFSGG 236 (596)
T ss_pred HHHHHHHHcCCCEEEe-CCcccCCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHHhCCCEEEeccccccCC
Confidence 8887767665443332 2554332211 1122333333334468899887532 11 23
Q ss_pred CCCcccHHHHHHHHHHcCCCc
Q psy13372 226 ARGEIDYAYVFELLAREGYEG 246 (273)
Q Consensus 226 ~~G~id~~~i~~~L~~~gy~g 246 (273)
. |..+...++..|+..||+-
T Consensus 237 t-Gn~~tE~lv~~L~~~g~~t 256 (596)
T PRK14042 237 A-SHPPTEALVAALTDTPYDT 256 (596)
T ss_pred C-CcHhHHHHHHHHHhcCCCC
Confidence 5 8999999999999988864
No 81
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=96.31 E-value=0.33 Score=41.86 Aligned_cols=205 Identities=15% Similarity=0.053 Sum_probs=111.9
Q ss_pred HHHHHHHHHcC-----CCeEEecCCCCCCCHHHHHHHHHHcCC---eeEEEecCCc---------------cccCCC---
Q psy13372 24 LDKYRVAAELG-----FRYIESWFPPVGVTLEQLVAAQTRHGL---KQVLINTEVD---------------ENFGYA--- 77 (273)
Q Consensus 24 ~~~l~~~~~~G-----~~~vEl~~~~~~~~~~~~~~~l~~~gL---~i~~~~~~~~---------------~~~~~~--- 77 (273)
.+.++.+.++| ++.||+. ++...+.+.++++++. ++ .+.....+.. ...+.+
T Consensus 24 v~i~~~L~~~G~~~~~v~~IE~~-s~~~~d~~~v~~~~~~-~~~~~~v~~~~r~~~~die~A~~~g~~~v~i~~s~S~~~ 101 (279)
T cd07947 24 VKIYDYLHELGGGSGVIRQTEFF-LYTEKDREAVEACLDR-GYKFPEVTGWIRANKEDLKLVKEMGLKETGILMSVSDYH 101 (279)
T ss_pred HHHHHHHHHcCCCCCccceEEec-CcChHHHHHHHHHHHc-CCCCCEEEEEecCCHHHHHHHHHcCcCEEEEEEcCCHHH
Confidence 34456667889 9999983 3332445566666543 22 2332221110 000010
Q ss_pred ---CCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcE--EEEccC
Q psy13372 78 ---AVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLT--ALIEPV 152 (273)
Q Consensus 78 ---~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~--i~lE~~ 152 (273)
.....+++.++.+..+++.|+..|.. +++..... . ..+.-+...+.+.++++.+.+.|+. |.|=-.
T Consensus 102 ~~~~~~~t~~e~l~~~~~~v~~a~~~g~~-v~~~~ed~--~------r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~DT 172 (279)
T cd07947 102 IFKKLKMTREEAMEKYLEIVEEALDHGIK-PRCHLEDI--T------RADIYGFVLPFVNKLMKLSKESGIPVKIRLCDT 172 (279)
T ss_pred HHHHhCcCHHHHHHHHHHHHHHHHHCCCe-EEEEEEcc--c------CCCcccchHHHHHHHHHHHHHCCCCEEEEeccC
Confidence 01224677888999999999998865 44433111 0 1111245667788888888888875 444322
Q ss_pred CCCCCCCcccCCHHHHHHHHHHHhh-cCCCceeEeeeccccc-ccCCChHHHHHhcCCcceeEEeccCCCCCCCCCCCcc
Q psy13372 153 NQHSVPGYYLSSFRVAERLIRELRA-HGISNVQLQFDFFNAQ-RICGDLTHTFGACRDLIGHVQIAQAPDRQEPHARGEI 230 (273)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~g~~~D~~h~~-~~~~~~~~~i~~~~~~i~~vHi~d~~~~~~~g~~G~i 230 (273)
-..-.|..+...|++..++++.++. ++.|.+.+- .|.+ ..|..+...+..+..-+..+|.+=+ +.+ -+. |.+
T Consensus 173 vG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~---~H~Hn~~Gla~AN~laA~~aG~~~vd~sv~-GlG-e~a-GN~ 246 (279)
T cd07947 173 LGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLE---WHGHNDFYKAVANAVAAWLYGASWVNCTLL-GIG-ERT-GNC 246 (279)
T ss_pred CCcCCccccccchHHHHHHHHHHHHhcCCCCceEE---EEecCCCChHHHHHHHHHHhCCCEEEEecc-ccc-ccc-cch
Confidence 1111122223345677777743332 222322222 2333 3355566666666666667776643 222 345 999
Q ss_pred cHHHHHHHHHHc-CCC
Q psy13372 231 DYAYVFELLARE-GYE 245 (273)
Q Consensus 231 d~~~i~~~L~~~-gy~ 245 (273)
+...++..|... |++
T Consensus 247 ~tE~lv~~l~~~~g~~ 262 (279)
T cd07947 247 PLEAMVIEYAQLKGNF 262 (279)
T ss_pred hHHHHHHHHHHhcCCC
Confidence 999999999987 775
No 82
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=96.23 E-value=0.52 Score=44.06 Aligned_cols=193 Identities=10% Similarity=0.010 Sum_probs=106.0
Q ss_pred HHHHHHHHHcCCCeEEecCCCC-CCCHHHHHHHHHHcC-CeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC
Q psy13372 24 LDKYRVAAELGFRYIESWFPPV-GVTLEQLVAAQTRHG-LKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN 101 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~l~~~g-L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG 101 (273)
.+.++.+.++|++.||+.+|.. ..+.+.++++.+... .++.++.. ..+ +.+.++++.....+
T Consensus 26 ~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~~~~~~~i~al~r---------~~~-------~did~a~~al~~~~ 89 (494)
T TIGR00973 26 LQIALALERLGVDIIEAGFPVSSPGDFEAVQRIARTVKNPRVCGLAR---------CVE-------KDIDAAAEALKPAE 89 (494)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEcC---------CCH-------HhHHHHHHhccccC
Confidence 3445566788999999988732 234556655544322 23333210 111 23344544444446
Q ss_pred CCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCCC
Q psy13372 102 IPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGIS 181 (273)
Q Consensus 102 ~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 181 (273)
...|.+....-+.... .......+...+.+.+.+++|+++|..+.+=+. +..-.+++.+.++++.+.+.+..
T Consensus 90 ~~~v~i~~~~S~~h~~--~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~E------d~~r~d~~~l~~~~~~~~~~Ga~ 161 (494)
T TIGR00973 90 KFRIHTFIATSPIHLE--HKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCE------DAGRTEIPFLARIVEAAINAGAT 161 (494)
T ss_pred CCEEEEEEccCHHHHH--HHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcC------CCCCCCHHHHHHHHHHHHHcCCC
Confidence 6777765432111000 002334667788888999999999976655542 23455788888898555555533
Q ss_pred ceeEeeecccccccCCChHHHHHhc---CC----cceeEEeccCCCC--------------------CCCCC-CCcccHH
Q psy13372 182 NVQLQFDFFNAQRICGDLTHTFGAC---RD----LIGHVQIAQAPDR--------------------QEPHA-RGEIDYA 233 (273)
Q Consensus 182 ~~g~~~D~~h~~~~~~~~~~~i~~~---~~----~i~~vHi~d~~~~--------------------~~~g~-~G~id~~ 233 (273)
.+.+ .||.-.... ..+.+.++.+ .+ -...+|.++..+. ...|+ .|..+..
T Consensus 162 ~i~l-~DTvG~~~P-~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~vd~tv~GlGERaGNa~le 239 (494)
T TIGR00973 162 TINI-PDTVGYALP-AEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQVECTINGIGERAGNAALE 239 (494)
T ss_pred EEEe-CCCCCCCCH-HHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEEEeecccccccCccHH
Confidence 3333 355333222 1233333333 22 2368898885321 12332 3999999
Q ss_pred HHHHHHHHc
Q psy13372 234 YVFELLARE 242 (273)
Q Consensus 234 ~i~~~L~~~ 242 (273)
.++-.|...
T Consensus 240 ~vv~~L~~~ 248 (494)
T TIGR00973 240 EVVMALKVR 248 (494)
T ss_pred HHHHHHHHh
Confidence 999999753
No 83
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=96.11 E-value=1.3 Score=42.40 Aligned_cols=190 Identities=13% Similarity=0.147 Sum_probs=106.9
Q ss_pred CHHHHHHHHHHcCCCeEEecCC--------C-CCCCHHHHHHHHHHcC-CeeEEEecCCccccCCCCCchhHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFP--------P-VGVTLEQLVAAQTRHG-LKQVLINTEVDENFGYAAVKGKESEFRASLE 91 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~--------~-~~~~~~~~~~~l~~~g-L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (273)
+...++..+.++||+.+|.|+. + .+.+-+.++.+.+... ..+.++. ....-.+....|+ +-++
T Consensus 28 d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~-Rg~n~vg~~~ypd------dvv~ 100 (593)
T PRK14040 28 DMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLL-RGQNLLGYRHYAD------DVVE 100 (593)
T ss_pred HHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEe-cCcceeccccCcH------HHHH
Confidence 3444555668889999999842 1 2233344444333221 3333332 2111112222222 2356
Q ss_pred HHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcE----EEEccCCCCCCCCcccCCHHH
Q psy13372 92 KTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLT----ALIEPVNQHSVPGYYLSSFRV 167 (273)
Q Consensus 92 ~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~----i~lE~~~~~~~~~~~~~~~~~ 167 (273)
..++.|...|+..+++.... . + ++.+....+.|+++|.. +++.- . + ..+.+-
T Consensus 101 ~~v~~a~~~Gid~~rifd~l---n-------d------~~~~~~ai~~ak~~G~~~~~~i~yt~-~----p---~~~~~~ 156 (593)
T PRK14040 101 RFVERAVKNGMDVFRVFDAM---N-------D------PRNLETALKAVRKVGAHAQGTLSYTT-S----P---VHTLQT 156 (593)
T ss_pred HHHHHHHhcCCCEEEEeeeC---C-------c------HHHHHHHHHHHHHcCCeEEEEEEEee-C----C---ccCHHH
Confidence 68889999999999986321 1 1 35677888999999974 44332 1 1 236777
Q ss_pred HHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhcC---CcceeEEeccCCCC--------------------CC-
Q psy13372 168 AERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACR---DLIGHVQIAQAPDR--------------------QE- 223 (273)
Q Consensus 168 ~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~---~~i~~vHi~d~~~~--------------------~~- 223 (273)
..++++++.+.+...+.++ |+.-.... ..+.+.++.+. +--.++|.+|+.|. ..
T Consensus 157 ~~~~a~~l~~~Gad~i~i~-Dt~G~l~P-~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai~gl 234 (593)
T PRK14040 157 WVDLAKQLEDMGVDSLCIK-DMAGLLKP-YAAYELVSRIKKRVDVPLHLHCHATTGLSTATLLKAIEAGIDGVDTAISSM 234 (593)
T ss_pred HHHHHHHHHHcCCCEEEEC-CCCCCcCH-HHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHHHHHHcCCCEEEeccccc
Confidence 7888866666654433333 55333221 12333333332 33468899986432 11
Q ss_pred -CCCCCcccHHHHHHHHHHcCCC
Q psy13372 224 -PHARGEIDYAYVFELLAREGYE 245 (273)
Q Consensus 224 -~g~~G~id~~~i~~~L~~~gy~ 245 (273)
-+. |..+...++..|+..||+
T Consensus 235 G~~~-Gn~~le~vv~~L~~~~~~ 256 (593)
T PRK14040 235 SMTY-GHSATETLVATLEGTERD 256 (593)
T ss_pred cccc-cchhHHHHHHHHHhcCCC
Confidence 145 999999999999988776
No 84
>PRK14847 hypothetical protein; Provisional
Probab=96.09 E-value=0.61 Score=41.10 Aligned_cols=197 Identities=12% Similarity=0.112 Sum_probs=106.5
Q ss_pred CHHHH---HHHHHHcCCCeEEecCCC-CCCCHHHHHHHHHHc----CCeeEEEecCCccccCCCCCchhHHHHHHHHHHH
Q psy13372 22 NYLDK---YRVAAELGFRYIESWFPP-VGVTLEQLVAAQTRH----GLKQVLINTEVDENFGYAAVKGKESEFRASLEKT 93 (273)
Q Consensus 22 ~~~~~---l~~~~~~G~~~vEl~~~~-~~~~~~~~~~~l~~~----gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (273)
+.++. .+.+.++|++.||..+|- ...+.+.++++.+.. +..+.+++- .. .+.+.++
T Consensus 52 s~eeKl~IA~~L~~lGVd~IEvG~Pa~s~~e~e~ir~I~~~~~~~~~~~i~~~~r---------~~-------~~dId~a 115 (333)
T PRK14847 52 DGARKLRLFEQLVAVGLKEIEVAFPSASQTDFDFVRKLIDERRIPDDVTIEALTQ---------SR-------PDLIART 115 (333)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHhCCCCCCcEEEEEec---------Cc-------HHHHHHH
Confidence 45555 455678899999999984 223456666666542 223333221 11 1345566
Q ss_pred HHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhC-----C----cEEEEccCCCCCCCCcccCC
Q psy13372 94 IQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERH-----S----LTALIEPVNQHSVPGYYLSS 164 (273)
Q Consensus 94 i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~-----g----v~i~lE~~~~~~~~~~~~~~ 164 (273)
++.....+...|++..+.-.-... .......+++++.+.+.+.+|+++ | |.+..|--. -.+
T Consensus 116 ~e~~~~~~~~~Vhi~~p~Sd~h~~--~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDas--------Rad 185 (333)
T PRK14847 116 FEALAGSPRAIVHLYNPIAPQWRR--IVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPETFS--------LAE 185 (333)
T ss_pred HHHhCCCCCCEEEEEecCCHHHHH--HHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeecCC--------CCC
Confidence 776666666777775432110000 002345678888888999999988 3 456666422 234
Q ss_pred HHHHHHHHHHHhhc-CCCcee---E-eeecccccccCCChHHHHHhcCC-------cceeEEeccCCCC-----------
Q psy13372 165 FRVAERLIRELRAH-GISNVQ---L-QFDFFNAQRICGDLTHTFGACRD-------LIGHVQIAQAPDR----------- 221 (273)
Q Consensus 165 ~~~~~~li~~~~~~-~~~~~g---~-~~D~~h~~~~~~~~~~~i~~~~~-------~i~~vHi~d~~~~----------- 221 (273)
++-+.++++..... +...+| + +.||--..... ...+.++.+.. -...+|.++..|.
T Consensus 186 ~dfL~~~~~~a~~~~ga~r~~a~~i~l~DTVG~~~P~-~~~~~i~~l~~~~~~~~~v~i~~H~HnD~GlA~ANslaA~~a 264 (333)
T PRK14847 186 LDFAREVCDAVSAIWGPTPQRKMIINLPATVESSTAN-VYADQIEWMHRSLARRDCIVLSVHPHNDRGTAVAAAELAVLA 264 (333)
T ss_pred HHHHHHHHHHHHHHhCCCccCCcEEEeCCccccCCHH-HHHHHHHHHHHhcCCCCCcEEEEEeCCCCchHHHHHHHHHHh
Confidence 55566666221111 211111 2 34552222211 12344444422 2356888875321
Q ss_pred ---------CCCCC-CCcccHHHHHHHHHHcCCC
Q psy13372 222 ---------QEPHA-RGEIDYAYVFELLAREGYE 245 (273)
Q Consensus 222 ---------~~~g~-~G~id~~~i~~~L~~~gy~ 245 (273)
..+|+ .|..+...++..|...|+.
T Consensus 265 Ga~~i~~tv~G~GERaGNa~lE~v~~~L~~~g~~ 298 (333)
T PRK14847 265 GAERIEGCLFGNGERTGNVDLVALALNLERQGIA 298 (333)
T ss_pred CCCEEEeeCCcCCccccchhHHHHHHHHHhcCCC
Confidence 12343 3899999999999887765
No 85
>PRK12999 pyruvate carboxylase; Reviewed
Probab=96.05 E-value=0.99 Score=46.58 Aligned_cols=194 Identities=14% Similarity=0.127 Sum_probs=111.5
Q ss_pred CHHHHHHHHHHc--CCCeEEecCC--------C-CCCC---HHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHH
Q psy13372 22 NYLDKYRVAAEL--GFRYIESWFP--------P-VGVT---LEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFR 87 (273)
Q Consensus 22 ~~~~~l~~~~~~--G~~~vEl~~~--------~-~~~~---~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~ 87 (273)
+...+...+.++ ||..||.|+. + .+.+ .+.+++.+.. ..+.++.-- ....|....|+
T Consensus 556 d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~--~~~q~l~Rg-~n~vgy~~yp~------ 626 (1146)
T PRK12999 556 DLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPN--VLFQMLLRG-SNAVGYTNYPD------ 626 (1146)
T ss_pred HHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCC--CeEEEEecc-cccccccCCCc------
Confidence 445566677888 9999999973 2 1122 2344444433 233332211 01122323332
Q ss_pred HHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCC----cEEEEcc--CCCCCCCCcc
Q psy13372 88 ASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHS----LTALIEP--VNQHSVPGYY 161 (273)
Q Consensus 88 ~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~g----v~i~lE~--~~~~~~~~~~ 161 (273)
+..+..++.|...|+..+++... -. + ++.++...+.+++.| +.++++- .+ +..-
T Consensus 627 ~v~~~~i~~a~~~Gid~~rifd~---ln--------d-----~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d----~~~~ 686 (1146)
T PRK12999 627 NVVRAFVREAAAAGIDVFRIFDS---LN--------W-----VENMRVAIDAVRETGKIAEAAICYTGDILD----PARA 686 (1146)
T ss_pred hHHHHHHHHHHHcCCCEEEEecc---CC--------h-----HHHHHHHHHHHHHcCCeEEEEEEEEecCCC----CCCC
Confidence 23445688899999999999631 11 1 456777778888777 5677771 11 2222
Q ss_pred cCCHHHHHHHHHHHhhcCCCceeEeeecccccccC--CChHHHHHhcCCcceeEEeccCCCC------------------
Q psy13372 162 LSSFRVAERLIRELRAHGISNVQLQFDFFNAQRIC--GDLTHTFGACRDLIGHVQIAQAPDR------------------ 221 (273)
Q Consensus 162 ~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~--~~~~~~i~~~~~~i~~vHi~d~~~~------------------ 221 (273)
..+++-..++++++.+.+...+.+ -|+.-..... .++...+++-.+--.++|.+|+.|.
T Consensus 687 ~~~~~~~~~~a~~l~~~Ga~~i~i-kDt~G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~an~laA~~aGad~vD~ 765 (1146)
T PRK12999 687 KYDLDYYVDLAKELEKAGAHILAI-KDMAGLLKPAAAYELVSALKEEVDLPIHLHTHDTSGNGLATYLAAAEAGVDIVDV 765 (1146)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEE-CCccCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHhCCCEEEe
Confidence 467888888887777776443333 2554333221 1233333333344578999987432
Q ss_pred --CC--CCCCCcccHHHHHHHHHHcCCCc
Q psy13372 222 --QE--PHARGEIDYAYVFELLAREGYEG 246 (273)
Q Consensus 222 --~~--~g~~G~id~~~i~~~L~~~gy~g 246 (273)
.. -++ |..+...++..|+..||+-
T Consensus 766 av~glg~~t-gn~~le~vv~~L~~~~~~t 793 (1146)
T PRK12999 766 AVASMSGLT-SQPSLNSIVAALEGTERDT 793 (1146)
T ss_pred cchhhcCCc-CCHHHHHHHHHHHhcCCCC
Confidence 01 235 8999999999999888763
No 86
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=96.01 E-value=0.5 Score=44.50 Aligned_cols=204 Identities=11% Similarity=0.059 Sum_probs=117.3
Q ss_pred HHHHHHHHHcCCCeEEecCCCC--CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC
Q psy13372 24 LDKYRVAAELGFRYIESWFPPV--GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN 101 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~--~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG 101 (273)
-+.+..++++|++-|-+..|.. ......+++.+.+.|..++.+.- +. .++. -++..+..
T Consensus 44 v~Qi~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~G~~iPLVAD-IH------F~~~----------~A~~a~~~-- 104 (611)
T PRK02048 44 VAQAKRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQGYMVPLVAD-VH------FNPK----------VADVAAQY-- 104 (611)
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEe-cC------CCcH----------HHHHHHHh--
Confidence 3445566889999999998842 24467888888888888775431 11 1121 13444444
Q ss_pred CCeEEecCCCCCCCC---CC----CCCCcchHHHHHHHHHHHHHHHhhCCcEEEEcc-CCCCCC--CCcccCCHH----H
Q psy13372 102 IPAIHIMSGKTESSR---TQ----PIASEDPYTTLKENLIYACAELERHSLTALIEP-VNQHSV--PGYYLSSFR----V 167 (273)
Q Consensus 102 ~~~i~~~~G~~~~~~---~~----~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~-~~~~~~--~~~~~~~~~----~ 167 (273)
+..|++.||+..... .. ...+++.++.+.+.+..+++.|+++|+.|-|=. ++.-.. -..+..|++ .
T Consensus 105 v~kiRINPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN~GSL~~~i~~~yg~tpe~mVeS 184 (611)
T PRK02048 105 AEKVRINPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVNHGSLSDRIMSRYGDTPEGMVES 184 (611)
T ss_pred hCCEEECCCcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCCChHHHHHH
Confidence 889999999885421 10 012556677888999999999999997655543 211000 011122332 2
Q ss_pred HHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhcCCcc------eeEEeccCCCCCCCCCCCcccHHHHHHHHHH
Q psy13372 168 AERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACRDLI------GHVQIAQAPDRQEPHARGEIDYAYVFELLAR 241 (273)
Q Consensus 168 ~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i------~~vHi~d~~~~~~~g~~G~id~~~i~~~L~~ 241 (273)
+++.++=|++.+-.++-+.+-..+.. ......+.+..++ .-+|+.-+.. +..-+ |.+.-+-=+..|..
T Consensus 185 Ale~~~i~e~~~f~diviS~KsS~~~----~~V~AyRlLa~~l~~~g~dyPLHLGvTEA-G~~ed-g~IKSAigiGaLL~ 258 (611)
T PRK02048 185 CMEFLRICVEEHFTDVVISIKASNTV----VMVRTVRLLVAVMEAEGMHYPLHLGVTEA-GDGED-GRIKSAVGIGALLA 258 (611)
T ss_pred HHHHHHHHHHCCCCcEEEEEEeCCcH----HHHHHHHHHHHHHHhcCCCCceEEEEecC-CCCcC-ceehhHHHHHHHHh
Confidence 33333223777666677766655542 1222333333222 2344443312 22334 88888888888888
Q ss_pred cCCCceEEEee
Q psy13372 242 EGYEGYVGLEY 252 (273)
Q Consensus 242 ~gy~g~~~lE~ 252 (273)
-|.-..+.+..
T Consensus 259 DGIGDTIRVSl 269 (611)
T PRK02048 259 DGIGDTIRVSL 269 (611)
T ss_pred cCCccEEEEeC
Confidence 88755555554
No 87
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=95.95 E-value=0.28 Score=43.87 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=21.6
Q ss_pred CCCCCcccHHHHHHHHHHcCCCceEEEe
Q psy13372 224 PHARGEIDYAYVFELLAREGYEGYVGLE 251 (273)
Q Consensus 224 ~g~~G~id~~~i~~~L~~~gy~g~~~lE 251 (273)
-|+ ++.+...+..+|+..+|+--+-+|
T Consensus 237 ~gt-sqP~tEtmv~aL~gt~yDtgld~~ 263 (472)
T COG5016 237 GGT-SQPATETMVAALRGTGYDTGLDLE 263 (472)
T ss_pred CCC-CCCcHHHHHHHhcCCCCCccccHH
Confidence 366 888999999999999998655554
No 88
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=95.94 E-value=0.18 Score=42.07 Aligned_cols=135 Identities=14% Similarity=0.052 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHcCCCeEEecCCC---CCCCHHHHHHHHHHcCCeeEEE-ecCCccccCCCCCchhHHHHHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPP---VGVTLEQLVAAQTRHGLKQVLI-NTEVDENFGYAAVKGKESEFRASLEKTIQYA 97 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~---~~~~~~~~~~~l~~~gL~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 97 (273)
.+++-++.|+++||+.||++... +..+..++.+.++++|+.+-+- +.- . ..++. ......+.+.++..
T Consensus 72 ~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K----~---~~~~~-~~~~~~~i~~~~~~ 143 (237)
T TIGR03849 72 KFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKK----S---PEKDS-ELTPDDRIKLINKD 143 (237)
T ss_pred hHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEecccccc----C---Ccccc-cCCHHHHHHHHHHH
Confidence 57778889999999999999542 2233456778899999998752 221 0 00111 11123333444444
Q ss_pred HHcCCCeEEecC---CC-CCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCc-EEEEccCCCCCCCCcccCCHHHHHHHH
Q psy13372 98 CALNIPAIHIMS---GK-TESSRTQPIASEDPYTTLKENLIYACAELERHSL-TALIEPVNQHSVPGYYLSSFRVAERLI 172 (273)
Q Consensus 98 ~~lG~~~i~~~~---G~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~i~lE~~~~~~~~~~~~~~~~~~~~li 172 (273)
=..||..|.+-+ |. .+--.. ........+ .++++..+. ++.+|- +++.+-..++
T Consensus 144 LeAGA~~ViiEarEsg~~~Gi~~~----~g~~r~d~v------~~i~~~l~~eklifEA-----------p~k~~q~~~I 202 (237)
T TIGR03849 144 LEAGADYVIIEGRESGKNIGLFDE----KGNVKEDEL------DVLAENVDINKVIFEA-----------PQKNQQVEFI 202 (237)
T ss_pred HHCCCcEEEEeehhcCCCcceeCC----CCCCchHHH------HHHHhhCChhcEEEEC-----------CCHHHHHHHH
Confidence 568999999965 21 110000 111112222 233334554 477774 2466778899
Q ss_pred HHHhhcCCCceeE-eeec
Q psy13372 173 RELRAHGISNVQL-QFDF 189 (273)
Q Consensus 173 ~~~~~~~~~~~g~-~~D~ 189 (273)
+.++ |+|.+ ++|.
T Consensus 203 ---~~~G-~~VNL~NI~~ 216 (237)
T TIGR03849 203 ---LKFG-PDVNLGNIPP 216 (237)
T ss_pred ---HHhC-CCcccccCCH
Confidence 8887 77775 5663
No 89
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=95.85 E-value=0.79 Score=42.83 Aligned_cols=195 Identities=12% Similarity=0.056 Sum_probs=102.4
Q ss_pred HHHHHHHHcCCCeEEecCCCC-CCCHHHHHHHHHHcC--------CeeEEEecCCccccCCCCCchhHHHHHHHHHHHHH
Q psy13372 25 DKYRVAAELGFRYIESWFPPV-GVTLEQLVAAQTRHG--------LKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQ 95 (273)
Q Consensus 25 ~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~l~~~g--------L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (273)
+.++.+.++|++.||+.+|.. +.+.+.++++.+..+ +. ..+..+. - ..+ +.++.+++
T Consensus 110 ~Ia~~L~~~GVd~IEvG~Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~-~~i~a~~-----R-~~~-------~dId~a~~ 175 (503)
T PLN03228 110 EIARQLAKLRVDIMEVGFPGSSEEEFEAVKTIAKTVGNEVDEETGYV-PVICGIA-----R-CKK-------RDIEAAWE 175 (503)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhcccccccccccc-eEEeeec-----c-cCH-------hhHHHHHH
Confidence 445566788999999988732 122344444433211 11 1111110 0 111 23444444
Q ss_pred HHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcE-EEEccCCCCCCCCcccCCHHHHHHHHHH
Q psy13372 96 YACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLT-ALIEPVNQHSVPGYYLSSFRVAERLIRE 174 (273)
Q Consensus 96 ~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-i~lE~~~~~~~~~~~~~~~~~~~~li~~ 174 (273)
.-...|++.|.+..+.-..... .......++.++.+.+.+++|+++|.. +.+=+ ++..-.+++-+.+++++
T Consensus 176 a~~~a~~~~V~i~i~~Sd~h~~--~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~------EDa~Rtd~efl~~~~~~ 247 (503)
T PLN03228 176 ALKYAKRPRILAFTSTSDIHMK--YKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC------EDGGRSDKEFLCKILGE 247 (503)
T ss_pred hhcccCCCEEEEEecCCHHHHH--HHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc------ccccccCHHHHHHHHHH
Confidence 3333477778765433211000 002334677888888999999999864 33322 12234466767888866
Q ss_pred HhhcCCCceeEeeecccccccCCChHHHHHhcCC-------cceeEEeccCCCC--------------------CCCCC-
Q psy13372 175 LRAHGISNVQLQFDFFNAQRICGDLTHTFGACRD-------LIGHVQIAQAPDR--------------------QEPHA- 226 (273)
Q Consensus 175 ~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~-------~i~~vHi~d~~~~--------------------~~~g~- 226 (273)
+.+.+...+.++ |+.-..... .+.+.++.+.. -...+|.++.-|. ...|.
T Consensus 248 a~~~Gad~I~l~-DTvG~~tP~-~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi~aGa~~Vd~Tv~GiGER 325 (503)
T PLN03228 248 AIKAGATSVGIA-DTVGINMPH-EFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGICAGARQVEVTINGIGER 325 (503)
T ss_pred HHhcCCCEEEEe-cCCCCCCHH-HHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHHHhCCCEEEEeccccccc
Confidence 566664545443 553332221 23333433322 2357888875321 12232
Q ss_pred CCcccHHHHHHHHHHcC
Q psy13372 227 RGEIDYAYVFELLAREG 243 (273)
Q Consensus 227 ~G~id~~~i~~~L~~~g 243 (273)
.|..+...++..|+..+
T Consensus 326 aGNa~lEevv~~L~~~~ 342 (503)
T PLN03228 326 SGNASLEEVVMALKCRG 342 (503)
T ss_pred cCCccHHHHHHHHHhcc
Confidence 28999999999998754
No 90
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=95.77 E-value=0.53 Score=41.18 Aligned_cols=205 Identities=14% Similarity=0.066 Sum_probs=105.1
Q ss_pred HHHHHHHcCCCeE-EecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCCCe
Q psy13372 26 KYRVAAELGFRYI-ESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIPA 104 (273)
Q Consensus 26 ~l~~~~~~G~~~v-El~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~ 104 (273)
.++.++++|...| |.....-..+++.++++.++.|+.|++-..++...+ . .+..+....+.+...+-.--.-|+.-
T Consensus 43 El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~tGv~II~~TG~y~~~~-~--p~~~~~~s~e~la~~~i~Ei~~Gidg 119 (308)
T PF02126_consen 43 ELKEFKAAGGRTIVDATPIGLGRDVEALREISRRTGVNIIASTGFYKEPF-Y--PEWVREASVEELADLFIREIEEGIDG 119 (308)
T ss_dssp HHHHHHHTTEEEEEE--SGGGTB-HHHHHHHHHHHT-EEEEEEEE-SGGC-S--CHHHHTSHHHHHHHHHHHHHHT-STT
T ss_pred HHHHHHHcCCCEEEecCCcccCcCHHHHHHHHHHhCCeEEEeCCCCcccc-C--ChhhhcCCHHHHHHHHHHHHHhcCCC
Confidence 4556678887654 665432238899999999999999997554322111 1 12233334444444444333445543
Q ss_pred EEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCCCcee
Q psy13372 105 IHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGISNVQ 184 (273)
Q Consensus 105 i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~g 184 (273)
..+.+|-.+...+ ....-..-.+.++.++...++.|+.|.+++-. -.....+.++++ .+.+-+.=.
T Consensus 120 T~ikaG~Ik~~~~----~~~it~~E~k~lrAaa~A~~~TG~pI~~H~~~-------g~~~~~e~~~il---~e~Gv~~~r 185 (308)
T PF02126_consen 120 TGIKAGIIKEIGS----SNPITPLEEKVLRAAARAHKETGAPISTHTGR-------GTRMGLEQLDIL---EEEGVDPSR 185 (308)
T ss_dssp SSB-ESEEEEEEB----TTBCEHHHHHHHHHHHHHHHHHT-EEEEEEST-------TGTCHHHHHHHH---HHTT--GGG
T ss_pred CccchhheeEeec----cCCCCHHHHHHHHHHHHHHHHhCCeEEEcCCC-------CCcCHHHHHHHH---HHcCCChhH
Confidence 2222333211000 11112233456777888889999999999832 122566778888 776544434
Q ss_pred EeeecccccccCCChHHHHHhcCCcceeEEeccC----CCCCC-CCCCCcccH---HHHHHHHHHcCCCceEEEee
Q psy13372 185 LQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQA----PDRQE-PHARGEIDY---AYVFELLAREGYEGYVGLEY 252 (273)
Q Consensus 185 ~~~D~~h~~~~~~~~~~~i~~~~~~i~~vHi~d~----~~~~~-~g~~G~id~---~~i~~~L~~~gy~g~~~lE~ 252 (273)
+++ +|+. ...|+. .++++..+=.++-+... .++.. |.- +..+. -..+..|.+.||...+++=.
T Consensus 186 vvi--gH~D-~~~D~~-y~~~la~~G~~l~~D~~g~~~~g~~~~~~~-~~~~d~~ri~~l~~L~~~Gy~~qIlLS~ 256 (308)
T PF02126_consen 186 VVI--GHMD-RNPDLD-YHRELADRGVYLEFDTIGREFSGKDKNPRV-GYPPDEERIELLKELIEEGYADQILLSH 256 (308)
T ss_dssp EEE--TSGG-GST-HH-HHHHHHHTT-EEEETTTT-B-TTTTTCHSC-TTS-HHHHHHHHHHHHHTTTGGGEEE-H
T ss_pred eEE--eCCC-CCCCHH-HHHHHHhcCCEEEecCCcccccCcccCccC-CCCCHHHHHHHHHHHHHcCCcCcEEEec
Confidence 444 7887 355653 34555444444444322 12211 112 23332 34677888999998877753
No 91
>PRK03739 2-isopropylmalate synthase; Validated
Probab=95.59 E-value=2 Score=40.82 Aligned_cols=198 Identities=12% Similarity=0.099 Sum_probs=99.7
Q ss_pred CHHHHHH---HHHHcCCCeEEecCCCC-CCCHHHHHHHHHHcCC-----eeEEEecCCccccCCCCCchhHHHHHHHHHH
Q psy13372 22 NYLDKYR---VAAELGFRYIESWFPPV-GVTLEQLVAAQTRHGL-----KQVLINTEVDENFGYAAVKGKESEFRASLEK 92 (273)
Q Consensus 22 ~~~~~l~---~~~~~G~~~vEl~~~~~-~~~~~~~~~~l~~~gL-----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (273)
+.++.++ .+.++|++.||..+|.- +.+.+.++.+.+ .++ .+..++. .. ...+++
T Consensus 50 s~~~Ki~ia~~L~~~GV~~IE~GfP~~s~~e~e~v~~i~~-~~~~~~~~~i~~l~r---------~~-------~~di~~ 112 (552)
T PRK03739 50 SPERKLRMFDLLVKIGFKEIEVGFPSASQTDFDFVRELIE-EGLIPDDVTIQVLTQ---------AR-------EHLIER 112 (552)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCcChHHHHHHHHHHH-hcCCCCCCEEEEEec---------cc-------hhHHHH
Confidence 5565554 56788999999998842 123344444433 444 3333221 00 123444
Q ss_pred HHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCC-------cEEEEccCCCCCCCCcccCCH
Q psy13372 93 TIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHS-------LTALIEPVNQHSVPGYYLSSF 165 (273)
Q Consensus 93 ~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~g-------v~i~lE~~~~~~~~~~~~~~~ 165 (273)
+++.....+.+.|.+....-..... .......++..+.+.+.+.+|+++| +.+.++.. +..=.++
T Consensus 113 a~~a~~~~~~~~v~i~~~~Sd~h~~--~~l~~t~ee~l~~~~~~v~~a~~~~~~~~~~~~~v~f~~E------DasR~d~ 184 (552)
T PRK03739 113 TFEALEGAKRAIVHLYNSTSPLQRR--VVFGKDRDGIKAIAVDGARLVKELAAKYPETEWRFEYSPE------SFTGTEL 184 (552)
T ss_pred HHHHhcCCCCCEEEEEEcCCHHHHH--HHhCCCHHHHHHHHHHHHHHHHHhcccccCceeEEEEecc------cCCCCCH
Confidence 5554443444466664322110000 0023456777778888888888877 33333331 2223567
Q ss_pred HHHHHHHHHHhhcCCCc------eeEeeecccccccCC--ChHHHHHhcC----CcceeEEeccCCCC------------
Q psy13372 166 RVAERLIRELRAHGISN------VQLQFDFFNAQRICG--DLTHTFGACR----DLIGHVQIAQAPDR------------ 221 (273)
Q Consensus 166 ~~~~~li~~~~~~~~~~------~g~~~D~~h~~~~~~--~~~~~i~~~~----~~i~~vHi~d~~~~------------ 221 (273)
+-+.++++...+..... +. +.||--...... +....+.+.. +-...+|++|.-|.
T Consensus 185 ~~l~~~~~~a~~~~~ag~~~~~~i~-l~DTvG~~~P~~~~~~v~~l~~~~~~~~~~~i~vH~HND~GlAvANslaAv~aG 263 (552)
T PRK03739 185 DFALEVCDAVIDVWQPTPERKVILN-LPATVEMSTPNVYADQIEWMCRNLARRDSVILSLHPHNDRGTGVAAAELALMAG 263 (552)
T ss_pred HHHHHHHHHHHHhhcCCCCceeEEE-eccCCcCcCHHHHHHHHHHHHHhCCcccCceEEEEeCCCCChHHHHHHHHHHhC
Confidence 77788883322211111 22 234422211111 1222222222 23467898874221
Q ss_pred --------CCCCC-CCcccHHHHHHHHHHcCCC
Q psy13372 222 --------QEPHA-RGEIDYAYVFELLAREGYE 245 (273)
Q Consensus 222 --------~~~g~-~G~id~~~i~~~L~~~gy~ 245 (273)
..+|+ .|..+...++-.|...|+.
T Consensus 264 a~~v~gtvnG~GERaGNa~le~vv~~L~~~g~~ 296 (552)
T PRK03739 264 ADRVEGCLFGNGERTGNVDLVTLALNLYTQGVD 296 (552)
T ss_pred CCEEEeeCCcCcccccChhHHHHHHHHHhcCCC
Confidence 13565 5999999999999877764
No 92
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=95.55 E-value=1.4 Score=38.55 Aligned_cols=104 Identities=14% Similarity=0.151 Sum_probs=68.7
Q ss_pred ccccccccccccccCHH---HHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEE-EecCCccccCCCCCchhH
Q psy13372 8 LAANLTLLFNDLAANYL---DKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVL-INTEVDENFGYAAVKGKE 83 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~---~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~-~~~~~~~~~~~~~~~~~~ 83 (273)
+.+++ |.-+.. .+.+ +.+..++++|++-|-+..|.. .+++.++++.+...+.++. +|+ +
T Consensus 20 I~VQS-Mtnt~T-~Dv~atv~QI~~L~~aGceiVRvavp~~-~~A~al~~I~~~~~iPlVADIHF----d---------- 82 (346)
T TIGR00612 20 IVVQS-MTNTDT-IDIDSTVAQIRALEEAGCDIVRVTVPDR-ESAAAFEAIKEGTNVPLVADIHF----D---------- 82 (346)
T ss_pred EEEEe-cCCCCc-hhHHHHHHHHHHHHHcCCCEEEEcCCCH-HHHHhHHHHHhCCCCCEEEeeCC----C----------
Confidence 44444 554442 1444 445567888999999998854 6678888888876666653 221 1
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEc
Q psy13372 84 SEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIE 150 (273)
Q Consensus 84 ~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE 150 (273)
+ +..-.|.+-|+..+++.||+.+. -+.++++++.|+++|+.|-+=
T Consensus 83 ------~-~lAl~a~~~g~dkiRINPGNig~---------------~e~v~~vv~~ak~~~ipIRIG 127 (346)
T TIGR00612 83 ------Y-RLAALAMAKGVAKVRINPGNIGF---------------RERVRDVVEKARDHGKAMRIG 127 (346)
T ss_pred ------c-HHHHHHHHhccCeEEECCCCCCC---------------HHHHHHHHHHHHHCCCCEEEe
Confidence 1 12223345699999999998854 246888999999999765543
No 93
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=95.31 E-value=0.13 Score=43.17 Aligned_cols=139 Identities=19% Similarity=0.117 Sum_probs=70.7
Q ss_pred cCHHHHHHHHHHcCCCeEEecCCC-C--CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCch-hHHHHHHHHHHHHHH
Q psy13372 21 ANYLDKYRVAAELGFRYIESWFPP-V--GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKG-KESEFRASLEKTIQY 96 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~~~-~--~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~ 96 (273)
..+++.++.++++||+.||++... + .....++.+.+++.|+.+.+-...- +++ ......+.+.+.++.
T Consensus 84 ~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~EvG~K--------~~~~~~~~~~~~~i~~~~~ 155 (244)
T PF02679_consen 84 GKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLSEVGKK--------DPESDFSLDPEELIEQAKR 155 (244)
T ss_dssp T-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEEEES-S--------SHHHHTT--CCHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEeecccCC--------CchhcccCCHHHHHHHHHH
Confidence 378999999999999999999542 1 1233566677888999987532211 111 001112233344444
Q ss_pred HHHcCCCeEEecC---CCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCc-EEEEccCCCCCCCCcccCCHHHHHHHH
Q psy13372 97 ACALNIPAIHIMS---GKTESSRTQPIASEDPYTTLKENLIYACAELERHSL-TALIEPVNQHSVPGYYLSSFRVAERLI 172 (273)
Q Consensus 97 a~~lG~~~i~~~~---G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~i~lE~~~~~~~~~~~~~~~~~~~~li 172 (273)
.-..||..|.+-+ |..+--.. ........+ .+++...+. ++.+|- +...+-..+|
T Consensus 156 dLeAGA~~ViiEarEsG~~Gi~~~----~g~~r~d~v------~~i~~~~~~~~lifEA-----------p~k~qq~~~I 214 (244)
T PF02679_consen 156 DLEAGADKVIIEARESGKGGIYDN----DGEVRTDLV------EKIIERLGLEKLIFEA-----------PQKEQQEWFI 214 (244)
T ss_dssp HHHHTECEEEE--TTT--STTB-T----TS-B-HHHH------HHHHTTS-GGGEEEE-------------SHHHHHHHH
T ss_pred HHHCCCCEEEEeeeccCCCCccCC----CCCccHHHH------HHHHHhCCHhHEEEeC-----------CCHhHHHHHH
Confidence 4457999999963 22210000 111122222 244444554 377784 2356778899
Q ss_pred HHHhhcCCCceeE-eeecccc
Q psy13372 173 RELRAHGISNVQL-QFDFFNA 192 (273)
Q Consensus 173 ~~~~~~~~~~~g~-~~D~~h~ 192 (273)
+.++ |+|-+ +++..+.
T Consensus 215 ---~~~G-~~VNLgNI~~~eV 231 (244)
T PF02679_consen 215 ---KRFG-PNVNLGNIAPSEV 231 (244)
T ss_dssp ---HHH--TT--EEEEEGGGH
T ss_pred ---HHhC-CCcCcccCCHHHH
Confidence 8887 77877 7776654
No 94
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=95.28 E-value=0.19 Score=41.65 Aligned_cols=74 Identities=11% Similarity=0.108 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHH
Q psy13372 50 EQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTL 129 (273)
Q Consensus 50 ~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~ 129 (273)
+.+.+.++++|+.++.|- .+++ ..++.|+++|+..|-+|+|...... .....++-
T Consensus 113 ~~~i~~l~~~gI~VSLFi---------DPd~-----------~qi~~A~~~GAd~VELhTG~Ya~a~-----~~~~~~~e 167 (234)
T cd00003 113 KPIIERLKDAGIRVSLFI---------DPDP-----------EQIEAAKEVGADRVELHTGPYANAY-----DKAEREAE 167 (234)
T ss_pred HHHHHHHHHCCCEEEEEe---------CCCH-----------HHHHHHHHhCcCEEEEechhhhcCC-----CchhHHHH
Confidence 566777888899877542 1222 3688899999999999999874432 12233455
Q ss_pred HHHHHHHHHHHhhCCcEEE
Q psy13372 130 KENLIYACAELERHSLTAL 148 (273)
Q Consensus 130 ~~~l~~l~~~a~~~gv~i~ 148 (273)
.+.+...+.+|.+.|+.+.
T Consensus 168 l~~i~~aa~~a~~~GL~Vn 186 (234)
T cd00003 168 LERIAKAAKLARELGLGVN 186 (234)
T ss_pred HHHHHHHHHHHHHcCCEEe
Confidence 7888899999999998764
No 95
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=95.26 E-value=0.96 Score=43.41 Aligned_cols=206 Identities=13% Similarity=0.103 Sum_probs=114.1
Q ss_pred HHHHHHHHHcCCCeEEecCCCC--CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC
Q psy13372 24 LDKYRVAAELGFRYIESWFPPV--GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN 101 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~--~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG 101 (273)
-+.+..++++|++-|-+..|.. ......|++.|.+.|..+..+.- +. .++ +.++..+..
T Consensus 113 v~Qi~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVAD-IH------F~~----------~~Al~a~~~-- 173 (733)
T PLN02925 113 VDQVMRIADKGADIVRITVQGKKEADACFEIKNTLVQKGYNIPLVAD-IH------FAP----------SVALRVAEC-- 173 (733)
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEe-cC------CCH----------HHHHHHHHh--
Confidence 3445567889999999998842 23467788888888888765431 11 112 223343443
Q ss_pred CCeEEecCCCCCCCC---CC----CCCCcchHHHHHHHHHHHHHHHhhCCcEEEEcc-CCCCCC--CCcccCCH----HH
Q psy13372 102 IPAIHIMSGKTESSR---TQ----PIASEDPYTTLKENLIYACAELERHSLTALIEP-VNQHSV--PGYYLSSF----RV 167 (273)
Q Consensus 102 ~~~i~~~~G~~~~~~---~~----~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~-~~~~~~--~~~~~~~~----~~ 167 (273)
+..|++.||+..... .. ..++++.++++.+.+..+++.|+++|+.|-|=. ++.-.. -..+..|+ +.
T Consensus 174 vdkiRINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGdtp~gmVeS 253 (733)
T PLN02925 174 FDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGDSPRGMVES 253 (733)
T ss_pred cCCeEECCcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCCChHHHHHH
Confidence 889999999885431 10 012555667777888889999999997655543 111000 01112232 22
Q ss_pred HHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhc----CCcceeEEeccCCCCCCCCCCCcccHHHHHHHHHHcC
Q psy13372 168 AERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGAC----RDLIGHVQIAQAPDRQEPHARGEIDYAYVFELLAREG 243 (273)
Q Consensus 168 ~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~----~~~i~~vHi~d~~~~~~~g~~G~id~~~i~~~L~~~g 243 (273)
+++.+|=|++.+-.++-+.+-..+....=........++ .++-.|+.+... + .+.+|.+.-+-=+..|..-|
T Consensus 254 Ale~~~i~e~~~f~diviS~KsSn~~~~V~AyR~La~~L~~~g~~yPLhLgvTEA---G-~~edg~IKSAigiGaLL~DG 329 (733)
T PLN02925 254 AFEFARICRKLDYHNFVFSMKASNPVVMVQAYRLLVAEMYVLGWDYPLHLGVTEA---G-EGEDGRMKSAIGIGTLLQDG 329 (733)
T ss_pred HHHHHHHHHHCCCCcEEEEEEcCChHHHHHHHHHHHHHHHhcCCCCceEEEEecC---C-CCcCceehhHHHHHHHHhcC
Confidence 333332237776666666666666533111111222222 233334444332 2 23337788777778888777
Q ss_pred CCceEEEee
Q psy13372 244 YEGYVGLEY 252 (273)
Q Consensus 244 y~g~~~lE~ 252 (273)
.-..+.+..
T Consensus 330 IGDTIRVSl 338 (733)
T PLN02925 330 LGDTIRVSL 338 (733)
T ss_pred CccEEEEEC
Confidence 654555543
No 96
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=95.18 E-value=2 Score=37.94 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=63.9
Q ss_pred HHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEE-EecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCC
Q psy13372 24 LDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVL-INTEVDENFGYAAVKGKESEFRASLEKTIQYACALNI 102 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~ 102 (273)
-+.+..++++|++-|-+..|.. .+++.++.+.++..+.++. +|+ + ++-++ .|..-|+
T Consensus 45 v~Qi~~L~~aGceiVRvav~~~-~~a~al~~I~~~~~iPlvADIHF----------d----------~~lAl-~a~~~G~ 102 (360)
T PRK00366 45 VAQIKRLARAGCEIVRVAVPDM-EAAAALPEIKKQLPVPLVADIHF----------D----------YRLAL-AAAEAGA 102 (360)
T ss_pred HHHHHHHHHcCCCEEEEccCCH-HHHHhHHHHHHcCCCCEEEecCC----------C----------HHHHH-HHHHhCC
Confidence 3445566788999999998854 6778888888887776664 221 1 11222 3445699
Q ss_pred CeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEc
Q psy13372 103 PAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIE 150 (273)
Q Consensus 103 ~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE 150 (273)
..+++.||+.+. ..+.++++++.|+++|+.|-|=
T Consensus 103 ~~iRINPGNig~--------------~~~~v~~vv~~ak~~~ipIRIG 136 (360)
T PRK00366 103 DALRINPGNIGK--------------RDERVREVVEAAKDYGIPIRIG 136 (360)
T ss_pred CEEEECCCCCCc--------------hHHHHHHHHHHHHHCCCCEEEe
Confidence 999999998843 1346888999999999765554
No 97
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=95.06 E-value=0.38 Score=41.18 Aligned_cols=110 Identities=12% Similarity=0.056 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHcCCCeEEecCCC---------------CCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPP---------------VGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEF 86 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~---------------~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~ 86 (273)
...+.+++++++||++|-+...+ +..+++++.+-.++.|+.|....-... .. +... .
T Consensus 33 ~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~-~~----~~~~---~ 104 (273)
T PF10566_consen 33 TQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSET-GG----NVAN---L 104 (273)
T ss_dssp HHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCH-TT----BHHH---H
T ss_pred HHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCc-ch----hhHh---H
Confidence 45677999999999999997322 135689999999999988875432211 00 0001 1
Q ss_pred HHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 87 RASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 87 ~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
.+..+++++..+++|++-|.+ +.+..+ -+..++...++++.|+++++.+-++-
T Consensus 105 ~~~~~~~f~~~~~~Gv~GvKi--dF~~~d----------~Q~~v~~y~~i~~~AA~~~LmvnfHg 157 (273)
T PF10566_consen 105 EKQLDEAFKLYAKWGVKGVKI--DFMDRD----------DQEMVNWYEDILEDAAEYKLMVNFHG 157 (273)
T ss_dssp HCCHHHHHHHHHHCTEEEEEE--E--SST----------SHHHHHHHHHHHHHHHHTT-EEEETT
T ss_pred HHHHHHHHHHHHHcCCCEEee--CcCCCC----------CHHHHHHHHHHHHHHHHcCcEEEecC
Confidence 223478899999999999988 333322 25788899999999999999988874
No 98
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=94.97 E-value=1.7 Score=35.57 Aligned_cols=124 Identities=14% Similarity=0.015 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHcCCCeEEecCCC--C--CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPP--V--GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYA 97 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~--~--~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 97 (273)
+++++ ..+.+.|.+.||+.... + .-+...++.+.+..++.+..+--|-++++-. ++ .-++.+++-|+.+
T Consensus 9 s~~~a-~~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRpr~gdF~Y--s~----~E~~~M~~dI~~~ 81 (201)
T PF03932_consen 9 SLEDA-LAAEAGGADRIELCSNLEVGGLTPSLGLIRQAREAVDIPVHVMIRPRGGDFVY--SD----EEIEIMKEDIRML 81 (201)
T ss_dssp SHHHH-HHHHHTT-SEEEEEBTGGGT-B---HHHHHHHHHHTTSEEEEE--SSSS-S-----H----HHHHHHHHHHHHH
T ss_pred CHHHH-HHHHHcCCCEEEECCCccCCCcCcCHHHHHHHHhhcCCceEEEECCCCCCccC--CH----HHHHHHHHHHHHH
Confidence 44444 45579999999998653 1 1346788888888889887654443333322 22 2356788899999
Q ss_pred HHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHH
Q psy13372 98 CALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLI 172 (273)
Q Consensus 98 ~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li 172 (273)
+++|++-+++ |....+ ..- =.+.++++.+.|+ |+.+.++= - -..+.++.++++-+
T Consensus 82 ~~~GadG~Vf--G~L~~d------g~i----D~~~~~~Li~~a~--~~~~tFHR--A----fD~~~d~~~al~~L 136 (201)
T PF03932_consen 82 RELGADGFVF--GALTED------GEI----DEEALEELIEAAG--GMPVTFHR--A----FDEVPDPEEALEQL 136 (201)
T ss_dssp HHTT-SEEEE----BETT------SSB-----HHHHHHHHHHHT--TSEEEE-G--G----GGGSSTHHHHHHHH
T ss_pred HHcCCCeeEE--EeECCC------CCc----CHHHHHHHHHhcC--CCeEEEeC--c----HHHhCCHHHHHHHH
Confidence 9999999998 444332 111 1356777777776 67777753 1 12456677776666
No 99
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=94.67 E-value=3.4 Score=37.69 Aligned_cols=193 Identities=16% Similarity=0.155 Sum_probs=110.2
Q ss_pred HHHHHHHHHcCCCeEEecCCCC-CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCC
Q psy13372 24 LDKYRVAAELGFRYIESWFPPV-GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNI 102 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~ 102 (273)
.++++.+.++|++.||..+|.. ..+.+.++.+....++ ..++. ........++.++.+...|+
T Consensus 27 i~Ia~~Ld~lGv~~IE~g~p~~s~~~~~~~~~i~~~~~~---~~~~~-------------~~~~~~~~~~~~ea~~~a~~ 90 (409)
T COG0119 27 IRIAKALDDLGVDYIEAGFPVASPGDFEFVRAIAEKAGL---FICAL-------------IAALARAIKRDIEALLEAGV 90 (409)
T ss_pred HHHHHHHHHcCCCEEEEeCCcCChhhHHHHHHHHHhcCc---ccchh-------------hhhhHHhHHhhHHHHHhCCC
Confidence 3445566788999999999842 2444555554445555 11110 01112355668888889999
Q ss_pred CeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCCCc
Q psy13372 103 PAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGISN 182 (273)
Q Consensus 103 ~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 182 (273)
..|.+.......... .......+...+.+.+..++|+++|+.+.+-+. +.+-.+++.+.++++.....+...
T Consensus 91 ~~i~if~~tSd~h~~--~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~E------d~~rt~~~~l~~~~~~~~~~ga~~ 162 (409)
T COG0119 91 DRIHIFIATSDLHLR--YKLKKTREEVLERAVDAVEYARDHGLEVRFSAE------DATRTDPEFLAEVVKAAIEAGADR 162 (409)
T ss_pred CEEEEEEcCCHHHHH--HHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEee------ccccCCHHHHHHHHHHHHHcCCcE
Confidence 998776433211000 002345678888899999999999988874331 224667888888883333332222
Q ss_pred eeEeeecccccccC--CChHHHHHhcCC--cceeEEeccCCCC--------------------CCCC--CCCcccHHHHH
Q psy13372 183 VQLQFDFFNAQRIC--GDLTHTFGACRD--LIGHVQIAQAPDR--------------------QEPH--ARGEIDYAYVF 236 (273)
Q Consensus 183 ~g~~~D~~h~~~~~--~~~~~~i~~~~~--~i~~vHi~d~~~~--------------------~~~g--~~G~id~~~i~ 236 (273)
+ -..||--..... .++..++....+ -...+|.+|.-|. ...| . |..+...+.
T Consensus 163 i-~l~DTvG~~~P~~~~~~i~~l~~~v~~~~~l~~H~HnD~G~AvANslaAv~aGa~~v~~TvnGiGERa-Gna~l~~v~ 240 (409)
T COG0119 163 I-NLPDTVGVATPNEVADIIEALKANVPNKVILSVHCHNDLGMAVANSLAAVEAGADQVEGTVNGIGERA-GNAALEEVV 240 (409)
T ss_pred E-EECCCcCccCHHHHHHHHHHHHHhCCCCCeEEEEecCCcchHHHHHHHHHHcCCcEEEEecccceecc-ccccHHHHH
Confidence 2 234553332211 133344444333 6678999885321 1345 4 888888887
Q ss_pred HHHHHc
Q psy13372 237 ELLARE 242 (273)
Q Consensus 237 ~~L~~~ 242 (273)
-.|.-.
T Consensus 241 ~~l~~~ 246 (409)
T COG0119 241 LALALR 246 (409)
T ss_pred HHHHHH
Confidence 555443
No 100
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=94.55 E-value=0.24 Score=46.27 Aligned_cols=200 Identities=13% Similarity=0.106 Sum_probs=109.4
Q ss_pred HHHHHHHHHcCCCeEEecCCCC--CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC
Q psy13372 24 LDKYRVAAELGFRYIESWFPPV--GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN 101 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~--~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG 101 (273)
-+.+..++++|++-|-+..|.. ......+++.|.+.|..++.+.- +. .++ +-++..+..
T Consensus 48 v~Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~g~~iPLVAD-IH------F~~----------~~A~~a~~~-- 108 (606)
T PRK00694 48 VRQICALQEWGCDIVRVTVQGLKEAQACEHIKERLIQQGISIPLVAD-IH------FFP----------QAAMHVADF-- 108 (606)
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhccCCCCCEEee-cC------CCh----------HHHHHHHHh--
Confidence 3445567889999999998842 24567888888888988775531 11 112 224444444
Q ss_pred CCeEEecCCCCCCCCC---C----CCCCcchHHHHHHHHHHHHHHHhhCCcEEEEcc-CCCCCC--CCcccCCHH----H
Q psy13372 102 IPAIHIMSGKTESSRT---Q----PIASEDPYTTLKENLIYACAELERHSLTALIEP-VNQHSV--PGYYLSSFR----V 167 (273)
Q Consensus 102 ~~~i~~~~G~~~~~~~---~----~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~-~~~~~~--~~~~~~~~~----~ 167 (273)
+..|++.||+...... . ...+++.++++.+.+..+++.|+++|+.|-|=. ++.-.. -..+..+++ .
T Consensus 109 vdkiRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~GSL~~~i~~~yG~tpegmVeS 188 (606)
T PRK00694 109 VDKVRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGSLSERVMQRYGDTIEGMVYS 188 (606)
T ss_pred cCceEECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCCCHHHHHHH
Confidence 8899999998854210 0 012566788889999999999999997655543 211000 011122332 2
Q ss_pred HHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhcCCcc------eeEEeccCCCCCCCCCCCcccHHHHHHHHHH
Q psy13372 168 AERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACRDLI------GHVQIAQAPDRQEPHARGEIDYAYVFELLAR 241 (273)
Q Consensus 168 ~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i------~~vHi~d~~~~~~~g~~G~id~~~i~~~L~~ 241 (273)
+++.++=|++.+-.++-+.+-..+.... .+..+.+..+. .-+|+-=+ .-..|.+|.|--+-=+..|..
T Consensus 189 Ale~~~i~e~~~f~diviS~KsSnv~~m----i~AyrlLa~~~d~eg~~YPLHLGVT--EAG~g~~G~IKSavGIG~LL~ 262 (606)
T PRK00694 189 ALEYIEVCEKLDYRDVVFSMKSSNPKVM----VAAYRQLAKDLDARGWLYPLHLGVT--EAGSGTDGIIKSAVGIGTLLS 262 (606)
T ss_pred HHHHHHHHHHCCCCcEEEEEEcCCHHHH----HHHHHHHHHHhhccCCCcCceeccc--cCcCCCCceeHHHHHHHHHHH
Confidence 2333322366665556655555444321 12222222222 23444321 111233377766666666666
Q ss_pred cCCCceE
Q psy13372 242 EGYEGYV 248 (273)
Q Consensus 242 ~gy~g~~ 248 (273)
.|.-..+
T Consensus 263 dGIGDTI 269 (606)
T PRK00694 263 EGLGDTI 269 (606)
T ss_pred hCCCCeE
Confidence 6654343
No 101
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=94.48 E-value=0.56 Score=38.45 Aligned_cols=77 Identities=17% Similarity=0.168 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHH
Q psy13372 50 EQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTL 129 (273)
Q Consensus 50 ~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~ 129 (273)
..+.+.+++.|++++.|- .+++ ..|+.|+..|+++|-+|+|......+. ...+..+..
T Consensus 114 ~~~v~~L~~~GirVSLFi---------D~d~-----------~qi~aa~~~gA~~IELhTG~Ya~~~~~--~~~~~~~~e 171 (243)
T COG0854 114 RDAVRRLKNAGIRVSLFI---------DPDP-----------EQIEAAAEVGAPRIELHTGPYADAHDA--AEQARADAE 171 (243)
T ss_pred HHHHHHHHhCCCeEEEEe---------CCCH-----------HHHHHHHHhCCCEEEEecccccccCCh--HHHHHHHHH
Confidence 456667888888888642 1222 357888999999999999987543210 012234447
Q ss_pred HHHHHHHHHHHhhCCcEEE
Q psy13372 130 KENLIYACAELERHSLTAL 148 (273)
Q Consensus 130 ~~~l~~l~~~a~~~gv~i~ 148 (273)
.+.|++.+++|.+.|+++.
T Consensus 172 l~rl~~~a~~A~~lGL~Vn 190 (243)
T COG0854 172 LERLAKAAKLAAELGLKVN 190 (243)
T ss_pred HHHHHHHHHHHHHcCceEe
Confidence 7789999999999998875
No 102
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=94.27 E-value=1.1 Score=37.87 Aligned_cols=135 Identities=14% Similarity=0.032 Sum_probs=86.1
Q ss_pred ccccccccccccccccCHHHHHHHHHHcCCCeEEecCCCC-C------CCHHHHHHHHHHcCCeeEEEecCCccccCCCC
Q psy13372 6 FKLAANLTLLFNDLAANYLDKYRVAAELGFRYIESWFPPV-G------VTLEQLVAAQTRHGLKQVLINTEVDENFGYAA 78 (273)
Q Consensus 6 ~k~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~-~------~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~ 78 (273)
.|++-++++......+.+.-.++.+-++|.++|-.....+ + ..+.++.+...++|+.+.....+-+ ..
T Consensus 82 vkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg----~~- 156 (265)
T COG1830 82 VKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRG----PA- 156 (265)
T ss_pred EEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccC----Cc-
Confidence 3666665444444445666677888899999998886532 1 1245677778899999887554322 11
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCC
Q psy13372 79 VKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVP 158 (273)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~ 158 (273)
.+.......+.+.-+.+++.+||+..|.+.... + + ++++++.+.|. .+|.++ .
T Consensus 157 ~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg---~------~--------e~F~~vv~~~~-vpVvia---------G 209 (265)
T COG1830 157 IKDEYHRDADLVGYAARLAAELGADIIKTKYTG---D------P--------ESFRRVVAACG-VPVVIA---------G 209 (265)
T ss_pred ccccccccHHHHHHHHHHHHHhcCCeEeecCCC---C------h--------HHHHHHHHhCC-CCEEEe---------C
Confidence 111122334677788999999999999884311 1 1 45666667666 555554 3
Q ss_pred CcccCCHHHHHHHH
Q psy13372 159 GYYLSSFRVAERLI 172 (273)
Q Consensus 159 ~~~~~~~~~~~~li 172 (273)
+.-..+.+++++++
T Consensus 210 G~k~~~~~~~l~~~ 223 (265)
T COG1830 210 GPKTETEREFLEMV 223 (265)
T ss_pred CCCCCChHHHHHHH
Confidence 33455778888888
No 103
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=94.14 E-value=0.32 Score=42.85 Aligned_cols=227 Identities=12% Similarity=0.178 Sum_probs=101.0
Q ss_pred ccccccccccccccCHH---HHHHHHHHcCCCeEEecCCCC--CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchh
Q psy13372 8 LAANLTLLFNDLAANYL---DKYRVAAELGFRYIESWFPPV--GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGK 82 (273)
Q Consensus 8 ~~~~~~~~~~~~~~~~~---~~l~~~~~~G~~~vEl~~~~~--~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~ 82 (273)
+.+++ |.-++. .+.+ +.+..+.++|++-|-+..|.. .....++++.|.+.|..++.+.- +. + +
T Consensus 17 I~VQS-Mt~t~t-~Dv~atv~QI~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~~iPlVAD-IH----F--d--- 84 (359)
T PF04551_consen 17 ISVQS-MTNTDT-RDVEATVAQIKRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGSPIPLVAD-IH----F--D--- 84 (359)
T ss_dssp -EEEE-E--S-T-T-HHHHHHHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT-SS-EEEE-ES----T--T---
T ss_pred EEEEe-cCCCCc-ccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCCCCCeeee-cC----C--C---
Confidence 44444 444442 1444 445566788999999998843 12346666667777777665431 11 1 1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEcc-CCCCC-----
Q psy13372 83 ESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEP-VNQHS----- 156 (273)
Q Consensus 83 ~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~-~~~~~----- 156 (273)
++.++..+.. +..+++.||+.... .++.....-+.++++++.|+++|+.|-+=- .+.-+
T Consensus 85 -------~~lAl~a~~~--v~kiRINPGNi~~~------~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~~~~~ 149 (359)
T PF04551_consen 85 -------YRLALEAIEA--VDKIRINPGNIVDE------FQEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLEKDILE 149 (359)
T ss_dssp -------CHHHHHHHHC---SEEEE-TTTSS----------SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-HHHHH
T ss_pred -------HHHHHHHHHH--hCeEEECCCccccc------ccccccchHHHHHHHHHHHHHCCCCEEEecccccCcHHHHh
Confidence 1224444444 88999999998421 222233345678899999999997655532 11100
Q ss_pred ----CCCcccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhcCCcceeEEeccCCCCCCCCCCCcccH
Q psy13372 157 ----VPGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAPDRQEPHARGEIDY 232 (273)
Q Consensus 157 ----~~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~~vHi~d~~~~~~~g~~G~id~ 232 (273)
.+..+..+..+-.+++ ++.+-.++-+.+-..+.... -.....+.+.-+|=.|+-+... +..-+ |.+.-
T Consensus 150 ky~~t~~amvesA~~~~~~l---e~~~f~~iviSlKsSdv~~~-i~ayr~la~~~dyPLHLGvTEA---G~~~~-g~IkS 221 (359)
T PF04551_consen 150 KYGPTPEAMVESALEHVRIL---EELGFDDIVISLKSSDVPET-IEAYRLLAERMDYPLHLGVTEA---GTGED-GTIKS 221 (359)
T ss_dssp HHCHHHHHHHHHHHHHHHHH---HHCT-GGEEEEEEBSSHHHH-HHHHHHHHHH--S-EEEEBSSE---ESCHH-HHHHH
T ss_pred hccchHHHHHHHHHHHHHHH---HHCCCCcEEEEEEeCChHHH-HHHHHHHHHhcCCCeEEeecCC---CCccc-chhHH
Confidence 0111222333334444 77765666666655554321 0011222222343333433332 11112 55555
Q ss_pred HHHHHHHHHcCCCceEEEee--ecCCChHHHHHHHHHhhc
Q psy13372 233 AYVFELLAREGYEGYVGLEY--KPQGNTKEGLEEFLKTFD 270 (273)
Q Consensus 233 ~~i~~~L~~~gy~g~~~lE~--~~~~~~~~~~~~~~~~~~ 270 (273)
+-=+..|...|.-..+-+-. .|.++..-+.. -|++.+
T Consensus 222 sigiG~LL~~GIGDTIRVSLt~~p~~EV~va~~-IL~al~ 260 (359)
T PF04551_consen 222 SIGIGALLLDGIGDTIRVSLTGDPVEEVKVAFE-ILQALG 260 (359)
T ss_dssp HHHHHHHHHTT--SEEEE-ECSSCCCHHHHHHH-HHHHTT
T ss_pred HHHHHHHHHcCCCCEEEEECCCCchHHHHHHHH-HHHHhC
Confidence 55555566555533333332 23333444444 454443
No 104
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=94.12 E-value=1.9 Score=35.64 Aligned_cols=107 Identities=11% Similarity=0.010 Sum_probs=71.6
Q ss_pred HHHHHHHHHcCCCeEEecCCC--C--CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFPP--V--GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACA 99 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~--~--~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 99 (273)
.+.+..+.+.|.+.||+.... + .-+.-.++.+.+..++.+..+--|-++++-++ . .-++..++-|+.+++
T Consensus 11 ~~~l~~A~~~GAdRiELC~~La~GG~TPSyG~~k~a~~~~~ipv~~MIRPRgGdFvY~--~----~E~~iM~~DI~~~~~ 84 (241)
T COG3142 11 VEGLLAAQAAGADRIELCDALAEGGLTPSYGVIKEAVELSKIPVYVMIRPRGGDFVYS--D----DELEIMLEDIRLARE 84 (241)
T ss_pred HhhHHHHHHcCCceeehhhccccCCCCCCHHHHHHHHhhcCCceEEEEecCCCCcccC--h----HHHHHHHHHHHHHHH
Confidence 456677889999999999642 1 13457788888888888876655544555332 2 225678889999999
Q ss_pred cCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEE
Q psy13372 100 LNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTAL 148 (273)
Q Consensus 100 lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~ 148 (273)
+|++-|++. ....+-. .=.+.+++|.+.|...+|++.
T Consensus 85 lG~~GVV~G--~lt~dg~----------iD~~~le~Li~aA~gL~vTFH 121 (241)
T COG3142 85 LGVQGVVLG--ALTADGN----------IDMPRLEKLIEAAGGLGVTFH 121 (241)
T ss_pred cCCCcEEEe--eecCCCc----------cCHHHHHHHHHHccCCceeee
Confidence 999999984 3322200 013467788888876666543
No 105
>PRK05474 xylose isomerase; Provisional
Probab=93.85 E-value=2.6 Score=38.26 Aligned_cols=73 Identities=12% Similarity=0.109 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCC
Q psy13372 82 KESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSV 157 (273)
Q Consensus 82 ~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~ 157 (273)
..+.+......+.++..+||+.++.+|--...+.-+ +..+..+++-+....+.+..++.||++.--+.+-+.+
T Consensus 73 ~~~~a~~k~d~afe~~~kLg~~~~~FHD~D~~peg~---s~~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~ 145 (437)
T PRK05474 73 ALDLAKAKADAAFEFFTKLGVPYYCFHDVDVAPEGA---SLKEYNANLDEIVDYLKEKQAETGVKLLWGTANLFSN 145 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeeccCccccCCCCC---CHHHHHHHHHHHHHHHHHHHHhhCCeeeeeccCccCC
Confidence 355667778889999999999999999654422110 1223333444445555666778999987776444333
No 106
>KOG0622|consensus
Probab=93.82 E-value=1.2 Score=40.01 Aligned_cols=96 Identities=10% Similarity=0.054 Sum_probs=70.7
Q ss_pred HHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCC-CCCCCCCCCCCCcchHH
Q psy13372 49 LEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSG-KTESSRTQPIASEDPYT 127 (273)
Q Consensus 49 ~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G-~~~~~~~~~~~~~~~~~ 127 (273)
.+.+.+..++++|.++.+++..+ .|. .+++...+++...+..++.+.++|-+...+-.| +++.... ....++
T Consensus 195 ~~~lLd~ak~l~lnvvGvsfHvG--Sgc-~d~~~y~~Ai~dAr~vfd~g~e~Gf~m~~LdiGGGf~g~~~----~~~~fe 267 (448)
T KOG0622|consen 195 CRHLLDMAKELELNVVGVSFHVG--SGC-TDLQAYRDAISDARNVFDMGAELGFEMDILDIGGGFPGDEG----HAVVFE 267 (448)
T ss_pred HHHHHHHHHHcCceEEEEEEEec--CCC-CCHHHHHHHHHHHHHHHHHHHhcCceEEEeecCCCCCCccc----hhhhhh
Confidence 47788888999999987665432 222 468888889999999999999999995555433 3433211 124578
Q ss_pred HHHHHHHHHHHHHhhC-CcEEEEcc
Q psy13372 128 TLKENLIYACAELERH-SLTALIEP 151 (273)
Q Consensus 128 ~~~~~l~~l~~~a~~~-gv~i~lE~ 151 (273)
...+.++.+++.-=.. ||.|..||
T Consensus 268 ~i~~~In~ald~~Fp~~~v~iiaEp 292 (448)
T KOG0622|consen 268 EIADVINTALDLYFPSGGVDIIAEP 292 (448)
T ss_pred hHHHHHHHHHHHhCCCCCceEEecc
Confidence 8899999998876555 99999998
No 107
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=93.81 E-value=2.2 Score=38.56 Aligned_cols=70 Identities=10% Similarity=0.130 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCC
Q psy13372 83 ESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQH 155 (273)
Q Consensus 83 ~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~ 155 (273)
.+.+......+.++..+||++++.+|--...+..+ +..+..+++-+.+..+.+..++.||++.--+.+-+
T Consensus 73 ~~~a~~k~daaFef~~kLg~~~~~FHD~D~~peg~---~~~E~~~~l~~i~~~~k~~~~~tGikllw~TanlF 142 (434)
T TIGR02630 73 MDKAKAKVDAAFEFFEKLGVPYYCFHDRDIAPEGA---SLRETNANLDEIVDLIKEKQKETGVKLLWGTANLF 142 (434)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeeccCccccCCCCC---CHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCcc
Confidence 55667778889999999999999999644422110 12233334444455555666789999877764433
No 108
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=93.70 E-value=9.6 Score=39.57 Aligned_cols=197 Identities=12% Similarity=0.062 Sum_probs=101.2
Q ss_pred CHHHHHHHHHH--cCCCeEEecCC--CC-------CCC---HHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHH
Q psy13372 22 NYLDKYRVAAE--LGFRYIESWFP--PV-------GVT---LEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFR 87 (273)
Q Consensus 22 ~~~~~l~~~~~--~G~~~vEl~~~--~~-------~~~---~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~ 87 (273)
++..++..+.+ .||-.+|.|+. ++ +.+ .+.+++.+....++... ......|..+.|+
T Consensus 554 d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl~EdPwerl~~~r~~~pn~~~qml~---Rg~n~vgy~~ypd------ 624 (1143)
T TIGR01235 554 DLAKIAPTTSHALPNLFSLECWGGATFDVAMRFLHEDPWERLEDLRKGVPNILFQMLL---RGANGVGYTNYPD------ 624 (1143)
T ss_pred HHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHhcCCHHHHHHHHHHhCCCCceeeee---ccccccCccCCCH------
Confidence 34445556666 49999999964 21 122 35555555433333221 1111123323332
Q ss_pred HHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCc----EEEEccCCCCCCCCcccC
Q psy13372 88 ASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSL----TALIEPVNQHSVPGYYLS 163 (273)
Q Consensus 88 ~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv----~i~lE~~~~~~~~~~~~~ 163 (273)
+-++..++.+++-|+..++++-.- +-++.++...+.+++.|. .|++.- ....+..-..
T Consensus 625 ~vv~~f~~~~~~~GidifrifD~l----------------N~~~n~~~~~~~~~~~g~~~~~~i~yt~--~~~d~~~~~~ 686 (1143)
T TIGR01235 625 NVVKYFVKQAAQGGIDIFRVFDSL----------------NWVENMRVGMDAVAEAGKVVEAAICYTG--DILDPARPKY 686 (1143)
T ss_pred HHHHHHHHHHHHcCCCEEEECccC----------------cCHHHHHHHHHHHHHcCCEEEEEEEEec--cCCCcCCCCC
Confidence 345667888888888888885321 124556666677777774 233331 0001222345
Q ss_pred CHHHHHHHHHHHhhcCCCceeEeeecccccccC--CChHHHHHhcCCcceeEEeccCCCCC-------------------
Q psy13372 164 SFRVAERLIRELRAHGISNVQLQFDFFNAQRIC--GDLTHTFGACRDLIGHVQIAQAPDRQ------------------- 222 (273)
Q Consensus 164 ~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~--~~~~~~i~~~~~~i~~vHi~d~~~~~------------------- 222 (273)
+.+-..++++++.+.+...+.+ -|+.-..... ..+...++...+--.++|.+|+.|..
T Consensus 687 ~l~y~~~~ak~l~~~Gad~I~i-kDt~Gll~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~Gla~an~laA~eaGad~vD~ai 765 (1143)
T TIGR01235 687 DLKYYTNLAVELEKAGAHILGI-KDMAGLLKPAAAKLLIKALREKTDLPIHFHTHDTSGIAVASMLAAVEAGVDVVDVAV 765 (1143)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE-CCCcCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCCcHHHHHHHHHHhCCCEEEecc
Confidence 6776777776666665433322 2443332211 11233333323444678888764320
Q ss_pred -CC-CCCCcccHHHHHHHHHHcCCCc
Q psy13372 223 -EP-HARGEIDYAYVFELLAREGYEG 246 (273)
Q Consensus 223 -~~-g~~G~id~~~i~~~L~~~gy~g 246 (273)
.. |..+..+...++..|+..||+-
T Consensus 766 ~gl~G~ts~p~~e~~v~~L~~~~~~t 791 (1143)
T TIGR01235 766 DSMSGLTSQPSLGAIVAALEGSERDP 791 (1143)
T ss_pred hhhcCCCCCHhHHHHHHHHHhCCCCC
Confidence 11 1125557788888888877763
No 109
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=93.46 E-value=4 Score=34.66 Aligned_cols=124 Identities=15% Similarity=0.125 Sum_probs=64.1
Q ss_pred cCHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHc-----------------CCeeEEEecCCccccCCCCCchhH
Q psy13372 21 ANYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRH-----------------GLKQVLINTEVDENFGYAAVKGKE 83 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~-----------------gL~i~~~~~~~~~~~~~~~~~~~~ 83 (273)
.+++..++.+++.||.||.=+ |--..---.+++.|++. ||--..+. + +++
T Consensus 95 ~~~~~fl~~lk~~Gf~GV~Nf-PTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yv--------f--~~e-- 161 (268)
T PF09370_consen 95 RDMDRFLDELKELGFSGVQNF-PTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYV--------F--NEE-- 161 (268)
T ss_dssp --HHHHHHHHHHHT-SEEEE--S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE-----------SHH--
T ss_pred CcHHHHHHHHHHhCCceEEEC-CcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeee--------c--CHH--
Confidence 378999999999999999865 41000012333333333 33222211 1 121
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCC--cEEEEccCCCCCCCCcc
Q psy13372 84 SEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHS--LTALIEPVNQHSVPGYY 161 (273)
Q Consensus 84 ~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~g--v~i~lE~~~~~~~~~~~ 161 (273)
.+-++ .+.|+..+++|.|.-..... ...+...++..++..+++.+.|++.+ +.+..+ +..
T Consensus 162 --------~A~~M-~~AGaDiiv~H~GlT~gG~~-Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~h--------GGP 223 (268)
T PF09370_consen 162 --------QARAM-AEAGADIIVAHMGLTTGGSI-GAKTALSLEEAAERIQEIFDAARAVNPDIIVLCH--------GGP 223 (268)
T ss_dssp --------HHHHH-HHHT-SEEEEE-SS-----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEE--------CTT
T ss_pred --------HHHHH-HHcCCCEEEecCCccCCCCc-CccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEe--------CCC
Confidence 12223 36799999999876532210 11256678999999999999998655 433333 335
Q ss_pred cCCHHHHHHHHHHHhhc
Q psy13372 162 LSSFRVAERLIRELRAH 178 (273)
Q Consensus 162 ~~~~~~~~~li~~~~~~ 178 (273)
+.+++++..++ +..
T Consensus 224 I~~p~D~~~~l---~~t 237 (268)
T PF09370_consen 224 IATPEDAQYVL---RNT 237 (268)
T ss_dssp B-SHHHHHHHH---HH-
T ss_pred CCCHHHHHHHH---hcC
Confidence 88999999999 876
No 110
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=93.34 E-value=1.8 Score=36.48 Aligned_cols=95 Identities=18% Similarity=0.090 Sum_probs=61.9
Q ss_pred HHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHH-HcCCC---eEEecCCCCCCCCCCCCCCcc
Q psy13372 49 LEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYAC-ALNIP---AIHIMSGKTESSRTQPIASED 124 (273)
Q Consensus 49 ~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~-~lG~~---~i~~~~G~~~~~~~~~~~~~~ 124 (273)
..++.+.+++.++.+..++++.+.+. .+.+.....++.+.+.++... .+|.+ .|.+..| ++.... .+.
T Consensus 143 ~~~~l~~~~~~~l~l~GlH~H~gS~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~idiGGG-~~~~y~----~~~ 214 (251)
T PF02784_consen 143 AEEALERAKELGLRLVGLHFHVGSQI---LDAEAFRQAIERLLDLAEELKEELGFEDLEFIDIGGG-FGVPYD----DEY 214 (251)
T ss_dssp HHHHHHHHHHTTEEEEEEEE-HCSSB---SSCHHHHHHHHHHHHHHHHHHHHTTTTT-SEEEEESS-B-SSSS----SSS
T ss_pred HHHHHHhhccceEEEEEeeeeeccCC---cchHHHHHHHHHHHHHHhhhccccccccccEEEeeCC-CCCCCc----ccc
Confidence 56677778899999998887654211 345666666777766666665 78755 7777544 433311 245
Q ss_pred hHHHHHHHHHHHHHHHhh---CCcEEEEcc
Q psy13372 125 PYTTLKENLIYACAELER---HSLTALIEP 151 (273)
Q Consensus 125 ~~~~~~~~l~~l~~~a~~---~gv~i~lE~ 151 (273)
.++.+.+.++++.+.... .++++.+||
T Consensus 215 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~Ep 244 (251)
T PF02784_consen 215 DLEEYAEVIREALKEYFEEGLPGPKLIIEP 244 (251)
T ss_dssp CHHHHHHHHHHHHHHHHCHTCTTSEEEEEE
T ss_pred cchhHHHHHHHHHHHHHhccCCCCEEEEee
Confidence 567777777777665544 589999998
No 111
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=93.28 E-value=0.99 Score=38.72 Aligned_cols=158 Identities=17% Similarity=0.171 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCccc
Q psy13372 83 ESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYL 162 (273)
Q Consensus 83 ~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~ 162 (273)
....++.+.++++...+-|++..++-+.-.+... .|...-+.++.+.+.|+++.++++++|+++.++| ++ .+.+
T Consensus 40 ~~~Nl~~l~~~L~~n~~~~I~~yRisS~liP~as-hp~~~~~~~~~~~~~l~~iG~~~~~~~iRls~HP-~q----f~vL 113 (275)
T PF03851_consen 40 ARQNLEDLLRILEYNIAHGIRFYRISSDLIPLAS-HPEVGWDWEEEFAEELAEIGDLAKENGIRLSMHP-DQ----FTVL 113 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTT--EEE--TTSSTTTT-STT--S-HHHHHHHHHHHHHHHHHHTT-EEEE----T----T--T
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEecCcccCCCCC-CcccccchHHHHHHHHHHHHHHHHHcCCeEEecC-Cc----ceeC
Confidence 3446788889999999999999999876555431 2321223455888999999999999999999998 22 2344
Q ss_pred CCH--HHHHHHHHHH-------hhcCCCc---eeEeeecccccccCCChHHHHHhcCCcceeEEeccCCCCC--CCCCCC
Q psy13372 163 SSF--RVAERLIREL-------RAHGISN---VQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAPDRQ--EPHARG 228 (273)
Q Consensus 163 ~~~--~~~~~li~~~-------~~~~~~~---~g~~~D~~h~~~~~~~~~~~i~~~~~~i~~vHi~d~~~~~--~~g~~G 228 (273)
+|+ +...+-++|| +.++-+. -.+.+-+|-. .+|-.+.++++......+.-. ...|- +-.+ =
T Consensus 114 nSp~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~GG~---YgdK~~al~RF~~~~~~L~~~-ir~rL~lENDd-~ 188 (275)
T PF03851_consen 114 NSPREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVGGV---YGDKEAALERFIENFKRLPES-IRKRLTLENDD-K 188 (275)
T ss_dssp T-SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE-------SS-HHHHHHHHHHHHHT--HH-HHTTEEEE--S-S
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeCCC---CCChHHHHHHHHHHHhhCCHh-hhhcEEEecCC-C
Confidence 444 3334444443 4444322 2333333322 234444444443322211000 00010 0011 2
Q ss_pred cccHHHHHHHHHHcCCCceEEEeee
Q psy13372 229 EIDYAYVFELLAREGYEGYVGLEYK 253 (273)
Q Consensus 229 ~id~~~i~~~L~~~gy~g~~~lE~~ 253 (273)
.....+++....+.|- ++++.+.
T Consensus 189 ~yt~~d~L~ic~~~gi--P~VfD~h 211 (275)
T PF03851_consen 189 TYTVEDVLPICEKLGI--PMVFDYH 211 (275)
T ss_dssp S--HHHHHHHHHHHT----EEEEHH
T ss_pred ccCHHHHHHHHHHhCC--CEEEEhH
Confidence 3456677777777765 7777753
No 112
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=93.16 E-value=1.1 Score=36.81 Aligned_cols=116 Identities=15% Similarity=0.146 Sum_probs=79.3
Q ss_pred cccccccccccc---c---cccCHHHHHHHHHHcCCCeEEecCCCC-----CCCHHHHHHHHHHcCCeeEEEecCCcccc
Q psy13372 6 FKLAANLTLLFN---D---LAANYLDKYRVAAELGFRYIESWFPPV-----GVTLEQLVAAQTRHGLKQVLINTEVDENF 74 (273)
Q Consensus 6 ~k~~~~~~~~~~---~---~~~~~~~~l~~~~~~G~~~vEl~~~~~-----~~~~~~~~~~l~~~gL~i~~~~~~~~~~~ 74 (273)
|+||+|..-+.. . ..+++.++...+..+|.|+|.++...| ..++..+++.++.. ++.-
T Consensus 1 ~~LgVNidhIAtLRnaR~t~~Pd~v~aa~iA~~aGAdgITvHlReDrRHI~d~Dv~~lr~~~~~~------~NlE----- 69 (243)
T COG0854 1 MLLGVNIDHIATLRNARGTPYPDPVEAAFIAEQAGADGITVHLREDRRHIQDRDVRILRALIDTR------FNLE----- 69 (243)
T ss_pred CcceecHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCceEeccCccccccchhhHHHHHHHcccc------eecc-----
Confidence 578888633322 1 236788888899999999999997533 36677888877765 2221
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHH--HHHHHHHHHHHhhCCcEEEE
Q psy13372 75 GYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTL--KENLIYACAELERHSLTALI 149 (273)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~--~~~l~~l~~~a~~~gv~i~l 149 (273)
.++. +.+ +.+|.+.....+.+.|-.+.. .+++-.|+-. .+.|+.++...+..|+++.|
T Consensus 70 -~a~t--------eEm---l~ia~~~kP~~vtLVPe~r~e-----vTTegGlD~~~~~~~l~~~v~~L~~~GirVSL 129 (243)
T COG0854 70 -MAPT--------EEM---LAIALKTKPHQVTLVPEKREE-----VTTEGGLDVAGQLDKLRDAVRRLKNAGIRVSL 129 (243)
T ss_pred -cCch--------HHH---HHHHHhcCCCeEEeCCCchhh-----cccccchhhhhhhhhHHHHHHHHHhCCCeEEE
Confidence 1111 122 888889999999987754422 2266677766 78888999999999987554
No 113
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=93.01 E-value=5.1 Score=34.08 Aligned_cols=83 Identities=13% Similarity=0.116 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCc---EEEEccCCCCCCCCcccCCHHH
Q psy13372 91 EKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSL---TALIEPVNQHSVPGYYLSSFRV 167 (273)
Q Consensus 91 ~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv---~i~lE~~~~~~~~~~~~~~~~~ 167 (273)
.+.++++++.|++.|.++..+.+.....-..++...+...+.+.+..+.+.+.|| .+.+.|.- .|..+.++
T Consensus 108 ~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iilDPg~------gf~ks~~~ 181 (257)
T TIGR01496 108 PAMLEVAAEYGVPLVLMHMRGTPRTMQENPHYEDVVEEVLRFLEARAEELVAAGVAAERIILDPGI------GFGKTPEH 181 (257)
T ss_pred chhHHHHHHcCCcEEEEeCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEECCC------CcccCHHH
Confidence 4577788899999999986433221100011455677888899999999999999 68999832 25567888
Q ss_pred HHHHHHHHhhcC
Q psy13372 168 AERLIRELRAHG 179 (273)
Q Consensus 168 ~~~li~~~~~~~ 179 (273)
..++++.++.+.
T Consensus 182 ~~~~l~~i~~l~ 193 (257)
T TIGR01496 182 NLELLKHLEEFV 193 (257)
T ss_pred HHHHHHHHHHHH
Confidence 888885555553
No 114
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=92.98 E-value=1.6 Score=38.51 Aligned_cols=101 Identities=14% Similarity=0.062 Sum_probs=64.1
Q ss_pred ccccccccccccc-cccCHHHHHHHHHHcCCCeEEecCCCC-------CCCHHHHHHHHHHcCCeeEEEecCCccccCCC
Q psy13372 6 FKLAANLTLLFND-LAANYLDKYRVAAELGFRYIESWFPPV-------GVTLEQLVAAQTRHGLKQVLINTEVDENFGYA 77 (273)
Q Consensus 6 ~k~~~~~~~~~~~-~~~~~~~~l~~~~~~G~~~vEl~~~~~-------~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~ 77 (273)
+|+.-+++..... ....+.-.++.+-++|.++|-+....+ -.+..++.+..+++||.+.....+-+.. .
T Consensus 130 lkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~--i- 206 (348)
T PRK09250 130 LKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSA--F- 206 (348)
T ss_pred EEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcc--c-
Confidence 3555444332322 122455557888999999999986532 0234666777889999988754443211 1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHcCCCeEEecC
Q psy13372 78 AVKGKESEFRASLEKTIQYACALNIPAIHIMS 109 (273)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~ 109 (273)
.++..-....+.+.-+.++|.+|||..|.+..
T Consensus 207 ~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~y 238 (348)
T PRK09250 207 KKDGDYHTAADLTGQANHLAATIGADIIKQKL 238 (348)
T ss_pred CCcccccccHHHHHHHHHHHHHHcCCEEEecC
Confidence 12221123356888999999999999998854
No 115
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=92.80 E-value=4.1 Score=32.47 Aligned_cols=122 Identities=9% Similarity=0.003 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN 101 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG 101 (273)
.+.+.++.+.+.|.++|.+.. .-.+.+++....+.+.+.. ++.. .. .. ...+...+.++.|.++|
T Consensus 14 ~~~~~~~~~~~~gv~gi~~~g----~~i~~~~~~~~~~~~~v~~-~v~~--~~---~~-----~~~~~~~~~a~~a~~~G 78 (201)
T cd00945 14 DIAKLCDEAIEYGFAAVCVNP----GYVRLAADALAGSDVPVIV-VVGF--PT---GL-----TTTEVKVAEVEEAIDLG 78 (201)
T ss_pred HHHHHHHHHHHhCCcEEEECH----HHHHHHHHHhCCCCCeEEE-EecC--CC---CC-----CcHHHHHHHHHHHHHcC
Confidence 578889999999999999975 1233333333321344432 2110 00 01 11345666778888899
Q ss_pred CCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHH
Q psy13372 102 IPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLI 172 (273)
Q Consensus 102 ~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li 172 (273)
+..+.+.+..... .....+.+.+.++++++.+ +.++.+.+.|.+. .. .+++...+++
T Consensus 79 ad~i~v~~~~~~~-------~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~~p~-----~~-~~~~~~~~~~ 135 (201)
T cd00945 79 ADEIDVVINIGSL-------KEGDWEEVLEEIAAVVEAA-DGGLPLKVILETR-----GL-KTADEIAKAA 135 (201)
T ss_pred CCEEEEeccHHHH-------hCCCHHHHHHHHHHHHHHh-cCCceEEEEEECC-----CC-CCHHHHHHHH
Confidence 9999875422111 1112467788888888877 6789988888642 12 4566777766
No 116
>PRK09875 putative hydrolase; Provisional
Probab=92.77 E-value=6.1 Score=34.32 Aligned_cols=196 Identities=12% Similarity=0.072 Sum_probs=96.9
Q ss_pred HHHHHHHcCCCeE-EecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCC--CchhHHHHHHHHHHHHHHH-HHcC
Q psy13372 26 KYRVAAELGFRYI-ESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAA--VKGKESEFRASLEKTIQYA-CALN 101 (273)
Q Consensus 26 ~l~~~~~~G~~~v-El~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~a-~~lG 101 (273)
-++..+++|...| |.....-..+++.++++.++.|+.|++-..++...+ .+. .....++..+.+.+-|... ..-|
T Consensus 39 el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~tgv~Iv~~TG~y~~~~-~p~~~~~~~~e~la~~~i~ei~~Gi~gt~ 117 (292)
T PRK09875 39 EMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQDAF-FPEHVATRSVQELAQEMVDEIEQGIDGTE 117 (292)
T ss_pred HHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHhCCcEEEcCcCCCCcc-CCHHHhcCCHHHHHHHHHHHHHHhhccCC
Confidence 3455677887766 554332248899999999999999997554332111 100 0111122222222222211 1222
Q ss_pred CCeEEe-cCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCC
Q psy13372 102 IPAIHI-MSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGI 180 (273)
Q Consensus 102 ~~~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 180 (273)
++.=++ -.|.- .......-.+.|+..+..+++.|+.|.+++-. +. -..+.++++ ++.+-
T Consensus 118 ikaGvIGeiG~~---------~~~it~~E~kvl~Aaa~a~~~TG~pi~~Ht~~-----~~---~g~e~l~il---~e~Gv 177 (292)
T PRK09875 118 LKAGIIAEIGSS---------EGKITPLEEKVFIAAALAHNQTGRPISTHTSF-----ST---MGLEQLALL---QAHGV 177 (292)
T ss_pred CcccEEEEEecC---------CCCCCHHHHHHHHHHHHHHHHHCCcEEEcCCC-----cc---chHHHHHHH---HHcCc
Confidence 322222 11211 11112234566777788899999999999621 11 222335566 66543
Q ss_pred CceeEeeecccccccCCChHH--HHHhcCCcceeEEeccCCCCCCCCCCCcccHHHHHHHHHHcCCCceEEEe
Q psy13372 181 SNVQLQFDFFNAQRICGDLTH--TFGACRDLIGHVQIAQAPDRQEPHARGEIDYAYVFELLAREGYEGYVGLE 251 (273)
Q Consensus 181 ~~~g~~~D~~h~~~~~~~~~~--~i~~~~~~i~~vHi~d~~~~~~~g~~G~id~~~i~~~L~~~gy~g~~~lE 251 (273)
+.=++++ +|+... .|+.. .+.+.+-++.+-++-- ... . ..-...+.+..|.+.||...+.+=
T Consensus 178 d~~rvvi--~H~d~~-~d~~~~~~l~~~G~~l~fD~~g~----~~~-~-pd~~r~~~i~~L~~~Gy~drilLS 241 (292)
T PRK09875 178 DLSRVTV--GHCDLK-DNLDNILKMIDLGAYVQFDTIGK----NSY-Y-PDEKRIAMLHALRDRGLLNRVMLS 241 (292)
T ss_pred CcceEEE--eCCCCC-CCHHHHHHHHHcCCEEEeccCCC----ccc-C-CHHHHHHHHHHHHhcCCCCeEEEe
Confidence 3234444 566532 44332 2223344555443321 100 0 111235556667777998887774
No 117
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=92.57 E-value=5.7 Score=33.52 Aligned_cols=78 Identities=21% Similarity=0.181 Sum_probs=52.6
Q ss_pred HHHHHHHHcCCCeEEecCCC--C--CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHc
Q psy13372 25 DKYRVAAELGFRYIESWFPP--V--GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACAL 100 (273)
Q Consensus 25 ~~l~~~~~~G~~~vEl~~~~--~--~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l 100 (273)
+-+..+.+.|.+.||+.... + --+...++...+..++.+..+--|-++++.. +++. ++...+-|+.++.+
T Consensus 12 ~~a~~A~~~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~~ipv~vMIRPR~gdF~Y--s~~E----~~~M~~di~~~~~~ 85 (248)
T PRK11572 12 ECALTAQQAGADRIELCAAPKEGGLTPSLGVLKSVRERVTIPVHPIIRPRGGDFCY--SDGE----FAAMLEDIATVREL 85 (248)
T ss_pred HHHHHHHHcCCCEEEEccCcCCCCcCCCHHHHHHHHHhcCCCeEEEEecCCCCCCC--CHHH----HHHHHHHHHHHHHc
Confidence 34456678999999998652 1 1345677777777678777554443333322 2322 56788889999999
Q ss_pred CCCeEEec
Q psy13372 101 NIPAIHIM 108 (273)
Q Consensus 101 G~~~i~~~ 108 (273)
|+.-+++.
T Consensus 86 GadGvV~G 93 (248)
T PRK11572 86 GFPGLVTG 93 (248)
T ss_pred CCCEEEEe
Confidence 99999883
No 118
>PLN02681 proline dehydrogenase
Probab=92.57 E-value=4.9 Score=37.19 Aligned_cols=131 Identities=13% Similarity=0.118 Sum_probs=75.5
Q ss_pred HHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCC--CeEEecCCCCCCC-------------
Q psy13372 51 QLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNI--PAIHIMSGKTESS------------- 115 (273)
Q Consensus 51 ~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~--~~i~~~~G~~~~~------------- 115 (273)
...+.+.+.|+..+ +... ++. ..+++..+...+.+.++|+.++..+. ..+.+.....+..
T Consensus 99 ~~i~~L~~~G~~~i-Ldy~--~E~--~~~e~~~d~~~~~~l~~Id~~~~~~~~~~~vsiK~Talg~~~ll~~~s~~~~~~ 173 (455)
T PLN02681 99 RTVRRLWELGLGGI-LDYA--AED--AGDNAACDRNLEKFLAAIRAAATLPPSSSSAAVKITALCPPSLLERVSDLLRWQ 173 (455)
T ss_pred HHHHHHHHCCCeEE-eecc--ccC--cCCHHHHHHHHHHHHHHHHHHhhcCCCCCceEEeeccCCcHHHHHhhhhhhhhc
Confidence 33455677788874 3321 122 13567778888999999999988765 4454432111100
Q ss_pred ------------C-----------------CCCCCC--cchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCC
Q psy13372 116 ------------R-----------------TQPIAS--EDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSS 164 (273)
Q Consensus 116 ------------~-----------------~~~~~~--~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~ 164 (273)
+ ..|.+. ...++.+.++++++|+.|++.||.+.|--... .+-..
T Consensus 174 ~~~~~~~l~~~~~~~~l~~~~s~~~~~~~~~~~l~~~e~~~~~~~~~rl~~i~~~A~~~gv~l~IDAE~s-----~~q~a 248 (455)
T PLN02681 174 DRDPNGKLPWKQWSFPLFADSSPLYHATSEPEPLTAEEERLLELAHERLQKLCERAAQLGVPLLIDAEYT-----SLQPA 248 (455)
T ss_pred cccccccccccccccccccccchhhhhccccccCchhhhhHHHHHHHHHHHHHHHHHHCCCEEEEeCCcc-----cchhH
Confidence 0 001111 22578999999999999999999999986322 12223
Q ss_pred HHH-HHHHHHHHhhcCCC-ceeEeeecccccc
Q psy13372 165 FRV-AERLIRELRAHGIS-NVQLQFDFFNAQR 194 (273)
Q Consensus 165 ~~~-~~~li~~~~~~~~~-~~g~~~D~~h~~~ 194 (273)
.+. +.+++ .+.+.. ...+++-|.+++.
T Consensus 249 id~l~~~l~---~~yN~~~~~~~V~~T~QaYL 277 (455)
T PLN02681 249 IDYITYDLA---REFNKGKDRPIVYGTYQAYL 277 (455)
T ss_pred HHHHHHHHH---HHhccccCCCcEEEEEeCcc
Confidence 333 46677 666432 2233444444443
No 119
>PRK12465 xylose isomerase; Provisional
Probab=92.46 E-value=2.1 Score=38.61 Aligned_cols=70 Identities=11% Similarity=0.059 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 82 KESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 82 ~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
.-+.+......+.++..+||+.++.+|--...+..+ +..+..+++-+....+.+..++.||++.--+-+-
T Consensus 83 ~~~~Ak~k~daaFEf~~kLG~~~~~FHD~D~~Peg~---s~~E~~~nld~iv~~~k~~~~~tGikllw~TaNl 152 (445)
T PRK12465 83 ALARAEAKSDAAFEFFTKLGVPYYCFHDIDLAPDAD---DIGEYESNLKHMVGIAKQRQADTGIKLLWGTANL 152 (445)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeeeccccccCCCCC---CHHHHHHHHHHHHHHHHHHhhhhCceeeeecccc
Confidence 356678889999999999999999999644422110 1222223333444444555668899887766443
No 120
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=92.40 E-value=3.4 Score=34.10 Aligned_cols=204 Identities=12% Similarity=0.053 Sum_probs=105.5
Q ss_pred CcccccccccccccccccCHHHHHHHHHHcCCCeEEecCC---CC---CCCHHHHHHHHHHcCCeeEEEecCCccccCCC
Q psy13372 4 PSFKLAANLTLLFNDLAANYLDKYRVAAELGFRYIESWFP---PV---GVTLEQLVAAQTRHGLKQVLINTEVDENFGYA 77 (273)
Q Consensus 4 ~~~k~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~---~~---~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~ 77 (273)
.|++++-|+ +...-. .+.+.++.+.++|.|.+.+..- +- ...+.-+.++.+...+.+.++-+-
T Consensus 2 ~~~~iapSI-LsaD~~--~l~~el~~~~~agad~iH~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV-------- 70 (220)
T COG0036 2 KMMKIAPSI-LSADFA--RLGEELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRKITDLPLDVHLMV-------- 70 (220)
T ss_pred CCceeeeeh-hhCCHh--HHHHHHHHHHHcCCCEEEEeccCCCcCCCcccCHHHHHHHhhcCCCceEEEEec--------
Confidence 356777665 333334 6799999999999999988842 11 123444444444334555554331
Q ss_pred CCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCC
Q psy13372 78 AVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSV 157 (273)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~ 157 (273)
.+| .++++...+.|+.+|.+|.= .. ..+.++.++.+++|++.++=- +
T Consensus 71 ~~p----------~~~i~~fa~agad~It~H~E---~~---------------~~~~r~i~~Ik~~G~kaGv~l-n---- 117 (220)
T COG0036 71 ENP----------DRYIEAFAKAGADIITFHAE---AT---------------EHIHRTIQLIKELGVKAGLVL-N---- 117 (220)
T ss_pred CCH----------HHHHHHHHHhCCCEEEEEec---cC---------------cCHHHHHHHHHHcCCeEEEEE-C----
Confidence 122 24666677789999999962 11 134556667777787755442 1
Q ss_pred CCcccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCC-hHHHHH---hcCCcceeEEeccCCCCCCCCCCCcccHH
Q psy13372 158 PGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGD-LTHTFG---ACRDLIGHVQIAQAPDRQEPHARGEIDYA 233 (273)
Q Consensus 158 ~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~-~~~~i~---~~~~~i~~vHi~d~~~~~~~g~~G~id~~ 233 (273)
|. +..+.+..++ +.++ --+=++.+.|- .|+. +.+.++ ++..++.- + +.....-+|-++..
T Consensus 118 P~---Tp~~~i~~~l---~~vD-~VllMsVnPGf---gGQ~Fi~~~l~Ki~~lr~~~~~---~---~~~~IeVDGGI~~~ 181 (220)
T COG0036 118 PA---TPLEALEPVL---DDVD-LVLLMSVNPGF---GGQKFIPEVLEKIRELRAMIDE---R---LDILIEVDGGINLE 181 (220)
T ss_pred CC---CCHHHHHHHH---hhCC-EEEEEeECCCC---cccccCHHHHHHHHHHHHHhcc---c---CCeEEEEeCCcCHH
Confidence 22 2344455666 6664 11222333322 2322 222222 22222221 0 00011112777766
Q ss_pred HHHHHHHHcCCCceEEEe-eecCCChHHHHHHHHHhh
Q psy13372 234 YVFELLAREGYEGYVGLE-YKPQGNTKEGLEEFLKTF 269 (273)
Q Consensus 234 ~i~~~L~~~gy~g~~~lE-~~~~~~~~~~~~~~~~~~ 269 (273)
.+ +.+.+.|-+-.+.=- ++...+..+.++ .+++.
T Consensus 182 t~-~~~~~AGad~~VaGSalF~~~d~~~~i~-~~~~~ 216 (220)
T COG0036 182 TI-KQLAAAGADVFVAGSALFGADDYKATIR-ELRGE 216 (220)
T ss_pred HH-HHHHHcCCCEEEEEEEEeCCccHHHHHH-HHHHH
Confidence 54 566667876433322 334445666666 66553
No 121
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=92.31 E-value=0.3 Score=40.67 Aligned_cols=76 Identities=16% Similarity=0.149 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHH
Q psy13372 50 EQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTL 129 (273)
Q Consensus 50 ~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~ 129 (273)
+.+.+.+++.|+.++.|- .+++ ..++.|+++|+.+|-+|+|......+ ..+...+.+
T Consensus 114 ~~~i~~L~~~gIrvSLFi---------DP~~-----------~qi~~A~~~Gad~VELhTG~yA~a~~---~~~~~~~el 170 (239)
T PF03740_consen 114 KPVIKRLKDAGIRVSLFI---------DPDP-----------EQIEAAKELGADRVELHTGPYANAFD---DAEEAEEEL 170 (239)
T ss_dssp HHHHHHHHHTT-EEEEEE----------S-H-----------HHHHHHHHTT-SEEEEETHHHHHHSS---HHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEe---------CCCH-----------HHHHHHHHcCCCEEEEehhHhhhhcC---CHHHHHHHH
Confidence 455566777777766542 1221 36889999999999999987633211 011122234
Q ss_pred HHHHHHHHHHHhhCCcEEE
Q psy13372 130 KENLIYACAELERHSLTAL 148 (273)
Q Consensus 130 ~~~l~~l~~~a~~~gv~i~ 148 (273)
.+.+...+.+|.+.|+.+.
T Consensus 171 l~~l~~aa~~a~~lGL~Vn 189 (239)
T PF03740_consen 171 LERLRDAARYAHELGLGVN 189 (239)
T ss_dssp HHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHHHcCCEEe
Confidence 6888999999999998775
No 122
>KOG2367|consensus
Probab=92.04 E-value=6.2 Score=36.30 Aligned_cols=196 Identities=16% Similarity=0.160 Sum_probs=107.1
Q ss_pred HHHHHHHHHHcCCCeEEecCCC-CCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC
Q psy13372 23 YLDKYRVAAELGFRYIESWFPP-VGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN 101 (273)
Q Consensus 23 ~~~~l~~~~~~G~~~vEl~~~~-~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG 101 (273)
-.+..+.+...|+|.||+.+|. .+.+.+..+.+.+..|..+...+.. . +. ...++++++...-..
T Consensus 81 K~eiar~L~~~gvd~IEv~fP~aSe~~~~~~~~i~k~~g~~~~I~~l~-r------c~-------~~di~~tvEAl~~aK 146 (560)
T KOG2367|consen 81 KLEIARQLAKLGVDIIEVGFPVASEQDFEDCKTIAKTLGYVPVICTLI-R------CH-------MDDIERTVEALKYAK 146 (560)
T ss_pred HHHHHHHHHhcCcCEEEecCcccCcchHHHHHHHHHhCCCCceEEEee-c------cc-------hHHHHHHHHHhhccC
Confidence 3455667778899999999994 2456778888888778776643321 1 11 234556666555333
Q ss_pred CCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCC---cEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhc
Q psy13372 102 IPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHS---LTALIEPVNQHSVPGYYLSSFRVAERLIRELRAH 178 (273)
Q Consensus 102 ~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~g---v~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~ 178 (273)
-++|.+..+.-.--+ ........+.+++.-.+...+++..| +++.-|. .+-...+-+++++++-..+
T Consensus 147 r~~Vh~~~aTSd~~r--ey~~~kskeevi~~Ave~ikfvkslg~~~ieFSpEd--------~~rse~~fl~eI~~aV~Ka 216 (560)
T KOG2367|consen 147 RPRVHVFIATSDIHR--EYKLKKSKEEVIESAVEVIKFVKSLGKWDIEFSPED--------FGRSELEFLLEILGAVIKA 216 (560)
T ss_pred cceEEEEecccHHHH--HHHhcccHHHHHHHHHHHHHHHHhcccceEEECccc--------cccCcHHHHHHHHHHHHHh
Confidence 344555444321000 00123345566666667778888777 3344333 2344566778888555666
Q ss_pred CCCceeEeeecccccccC--CChHHHHHhcCC----cceeEEeccCCC--------------CC------CCCC-CCccc
Q psy13372 179 GISNVQLQFDFFNAQRIC--GDLTHTFGACRD----LIGHVQIAQAPD--------------RQ------EPHA-RGEID 231 (273)
Q Consensus 179 ~~~~~g~~~D~~h~~~~~--~~~~~~i~~~~~----~i~~vHi~d~~~--------------~~------~~g~-~G~id 231 (273)
+-|.|++- |+--+.... .++.+.++..-+ -+..+|+++--| +. ..|+ .|..|
T Consensus 217 g~~tvnip-dTVgia~P~~y~dLI~y~~tn~~~~e~v~Is~HcHND~G~a~Ant~~g~~AGA~~VE~~i~GiGERtGn~~ 295 (560)
T KOG2367|consen 217 GVTTVNIP-DTVGIATPNEYGDLIEYLKTNTPGREKVCISTHCHNDLGCATANTELGLLAGARQVEVTINGIGERTGNAP 295 (560)
T ss_pred CCccccCc-ceecccChHHHHHHHHHHHccCCCceeEEEEEeecCCccHHHHHHHHHhhcCcceEEEEeeccccccCCCC
Confidence 66665543 433222221 233344444222 245667664211 10 1232 28888
Q ss_pred HHHHHHHHHHcC
Q psy13372 232 YAYVFELLAREG 243 (273)
Q Consensus 232 ~~~i~~~L~~~g 243 (273)
+..++-.+.=.|
T Consensus 296 L~~v~m~my~~g 307 (560)
T KOG2367|consen 296 LEEVVMAMYCRG 307 (560)
T ss_pred HHHHHHHheecC
Confidence 888877777665
No 123
>PLN02923 xylose isomerase
Probab=91.44 E-value=1.1 Score=40.38 Aligned_cols=70 Identities=10% Similarity=0.087 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCC
Q psy13372 83 ESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQH 155 (273)
Q Consensus 83 ~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~ 155 (273)
-+.+......+.+...+||++++.+|--...+..+ +..+..+++-+....+.+..++.||++.--+-+-+
T Consensus 118 m~~A~~k~daaFEf~~kLG~~y~cFHD~Dl~Peg~---sl~E~~~nld~ivd~~ke~~~~TGikllwgTaNlF 187 (478)
T PLN02923 118 LAMAKRRMRANFEFLKKLGVDRWCFHDRDIAPDGK---TLEESNANLDEVVALAKELQEGTKIRPLWGTAQLF 187 (478)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEccCccccCCCCC---CHHHHHhhHHHHHHHHHHHhHhhCceeeeeccccc
Confidence 55677888889999999999999999654422110 02222222333333334445578998877664433
No 124
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=91.34 E-value=1.1 Score=40.37 Aligned_cols=82 Identities=12% Similarity=0.105 Sum_probs=58.4
Q ss_pred HHHHHHHHHcCCCeEEecC---CCC----CCCHHHHHHHHHHcCCeeEEEec-CCccccCCCCCchhHHHHHHHHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWF---PPV----GVTLEQLVAAQTRHGLKQVLINT-EVDENFGYAAVKGKESEFRASLEKTIQ 95 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~---~~~----~~~~~~~~~~l~~~gL~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (273)
.-.++.+++.|.++|-... |.+ ...+.++++.++++||+...+-. +.....-+ ....|++.++++++.|+
T Consensus 13 ~v~l~~irQ~G~~giV~al~~~p~gevW~~~~i~~~k~~ie~~GL~~~vvEs~pv~e~Ik~--g~~~rd~~Ienyk~~ir 90 (394)
T TIGR00695 13 PVSLEDVRQAGATGIVTALHHIPNGEVWEKEEIRKRKEYIESAGLHWSVVESVPVHEAIKT--GTGNYGRWIENYKQTLR 90 (394)
T ss_pred cchHHHHhhcCCcceeecCCCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCCccHHHHc--CCCcHHHHHHHHHHHHH
Confidence 4457788889999998553 222 23467888999999999997643 32211101 13467889999999999
Q ss_pred HHHHcCCCeEEe
Q psy13372 96 YACALNIPAIHI 107 (273)
Q Consensus 96 ~a~~lG~~~i~~ 107 (273)
-..++|++.|..
T Consensus 91 Nla~~GI~vicY 102 (394)
T TIGR00695 91 NLAQCGIKTVCY 102 (394)
T ss_pred HHHHcCCCEEEE
Confidence 999999998743
No 125
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=91.22 E-value=2.6 Score=38.40 Aligned_cols=86 Identities=9% Similarity=0.174 Sum_probs=61.1
Q ss_pred ccCHHHHHHHHHHcCCCeEEecCCCC-CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHH
Q psy13372 20 AANYLDKYRVAAELGFRYIESWFPPV-GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYAC 98 (273)
Q Consensus 20 ~~~~~~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~ 98 (273)
..++.+.++.+++.||+.|++..+.- .....++.+.++++|+....+... |.+ ++.--...-.+..+++-+.
T Consensus 124 r~DL~eiv~~a~e~g~~hVqinTnGirlA~~~~~~~~l~~ag~~tvYlsFD-----G~~--e~~~~~~~~eIk~alen~r 196 (475)
T COG1964 124 RDDLIEIIKIAREEGYDHVQLNTNGIRLAFDPEYVKKLREAGVNTVYLSFD-----GVT--PKTNWKNHWEIKQALENCR 196 (475)
T ss_pred hhhHHHHHHHHhhcCccEEEEccCceeeccCHHHHHHHHhcCCcEEEEecC-----CCC--CCchhhHhhhhHHHHHHHH
Confidence 35899999999999999999997621 233478889999999777765432 122 2211222445566999999
Q ss_pred HcCCCeEEecCCCC
Q psy13372 99 ALNIPAIHIMSGKT 112 (273)
Q Consensus 99 ~lG~~~i~~~~G~~ 112 (273)
..|-+.+++.++-.
T Consensus 197 ~~g~~svVLVptl~ 210 (475)
T COG1964 197 KAGLPSVVLVPTLI 210 (475)
T ss_pred hcCCCcEEEEeehh
Confidence 99999888877654
No 126
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=91.01 E-value=0.61 Score=38.90 Aligned_cols=145 Identities=13% Similarity=0.148 Sum_probs=81.3
Q ss_pred cccccccccccc--c----cccCHHHHHHHHHHcCCCeEEecCCCC-----CCCHHHHHHHHHHcCCeeEEEecCCcccc
Q psy13372 6 FKLAANLTLLFN--D----LAANYLDKYRVAAELGFRYIESWFPPV-----GVTLEQLVAAQTRHGLKQVLINTEVDENF 74 (273)
Q Consensus 6 ~k~~~~~~~~~~--~----~~~~~~~~l~~~~~~G~~~vEl~~~~~-----~~~~~~~~~~l~~~gL~i~~~~~~~~~~~ 74 (273)
||||||.--+.. + ..+++.++...+.+.|.++|.++...| +.++..+++.++.. +.+-+
T Consensus 1 ~~L~VNIdhvAtLRnaR~~~~Pdpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~-lNlE~--------- 70 (239)
T PF03740_consen 1 MRLGVNIDHVATLRNARGGNYPDPVEAARIAEEAGADGITVHLREDRRHIQDRDVRRLRELVKTP-LNLEM--------- 70 (239)
T ss_dssp -EEEEE-HHHHHHHHTTSSS-S-HHHHHHHHHHTT-SEEEEEB-TT-SSS-HHHHHHHHHH-SSE-EEEEE---------
T ss_pred CcceechhhheecccCCCCCCCCHHHHHHHHHHcCCCEEEeccCCCcCcCCHHHHHHHHHHcccC-EEecc---------
Confidence 678888633322 1 235889999999999999999997543 23455666655443 22111
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHH--HHHHHHHHHHHHHhhCCcE--EEEc
Q psy13372 75 GYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYT--TLKENLIYACAELERHSLT--ALIE 150 (273)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~--~~~~~l~~l~~~a~~~gv~--i~lE 150 (273)
++.+ ..+++|.++....+.+.|=.+..- +++..|+ ...+.|+++++..++.||+ +.++
T Consensus 71 --a~t~-----------e~~~ia~~~kP~~vtLVPE~r~e~-----TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiD 132 (239)
T PF03740_consen 71 --APTE-----------EMVDIALKVKPDQVTLVPEKREEL-----TTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFID 132 (239)
T ss_dssp --ESSH-----------HHHHHHHHH--SEEEEE--SGGGB-----STTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-
T ss_pred --CCCH-----------HHHHHHHhCCcCEEEECCCCCCCc-----CCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeC
Confidence 1112 356688888999998876444221 1233333 2357888888899999987 4455
Q ss_pred cCCCCCCCCcccCCHHHHHHHHHHHhhcCCCceeEeeecccccccC
Q psy13372 151 PVNQHSVPGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRIC 196 (273)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~ 196 (273)
| -.+.++.. .+++.+ .+-++||++....
T Consensus 133 P-------------~~~qi~~A---~~~Gad--~VELhTG~yA~a~ 160 (239)
T PF03740_consen 133 P-------------DPEQIEAA---KELGAD--RVELHTGPYANAF 160 (239)
T ss_dssp S--------------HHHHHHH---HHTT-S--EEEEETHHHHHHS
T ss_pred C-------------CHHHHHHH---HHcCCC--EEEEehhHhhhhc
Confidence 4 12346677 777655 6778898876543
No 127
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=90.99 E-value=4 Score=34.00 Aligned_cols=113 Identities=10% Similarity=-0.024 Sum_probs=66.2
Q ss_pred CCCCcc-cccccccccccccccCHHHHHHHHHHcCCCeEEecCC---CC---CCCHHHHHHHHHHc-CCeeEEEecCCcc
Q psy13372 1 MAAPSF-KLAANLTLLFNDLAANYLDKYRVAAELGFRYIESWFP---PV---GVTLEQLVAAQTRH-GLKQVLINTEVDE 72 (273)
Q Consensus 1 ~~~~~~-k~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~---~~---~~~~~~~~~~l~~~-gL~i~~~~~~~~~ 72 (273)
|..|++ +++.|. ++.... .+.+.++.+.+.|++.+.+..- +- ....+.++++.+.. .+.+..+-..
T Consensus 1 ~~~~~~~~i~pSi-~~~d~~--~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~--- 74 (228)
T PTZ00170 1 MKQPLKAIIAPSI-LAADFS--KLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMV--- 74 (228)
T ss_pred CCCCCCCEEehhH-hhcCHH--HHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECC---
Confidence 444554 445554 344434 6899999999999999998852 11 13444555543332 3554433221
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 73 NFGYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
.+| ...++.+...|+..+.+|.-. . .. .+.+.++.+++.|+.+++--
T Consensus 75 -----~~p----------~~~i~~~~~~Gad~itvH~ea---~-------~~-------~~~~~l~~ik~~G~~~gval 121 (228)
T PTZ00170 75 -----SNP----------EKWVDDFAKAGASQFTFHIEA---T-------ED-------DPKAVARKIREAGMKVGVAI 121 (228)
T ss_pred -----CCH----------HHHHHHHHHcCCCEEEEeccC---C-------ch-------HHHHHHHHHHHCCCeEEEEE
Confidence 122 235677778899999998521 1 01 14455666677787776653
No 128
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=90.78 E-value=4.2 Score=33.15 Aligned_cols=132 Identities=14% Similarity=0.085 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN 101 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG 101 (273)
++.+.++.+.+.|+++|-+. | ...+..++.++..++.+.+...+. .|..+ .+.....++.|-++|
T Consensus 18 ~i~~~~~~a~~~~~~av~v~-p---~~v~~~~~~l~~~~~~v~~~~~fp---~g~~~--------~~~k~~eve~A~~~G 82 (203)
T cd00959 18 DIRKLCDEAKEYGFAAVCVN-P---CFVPLAREALKGSGVKVCTVIGFP---LGATT--------TEVKVAEAREAIADG 82 (203)
T ss_pred HHHHHHHHHHHcCCCEEEEc-H---HHHHHHHHHcCCCCcEEEEEEecC---CCCCc--------HHHHHHHHHHHHHcC
Confidence 56778888999999999986 2 234556666666777776543221 11111 123334466788899
Q ss_pred CCeEEecC--CCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcC
Q psy13372 102 IPAIHIMS--GKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHG 179 (273)
Q Consensus 102 ~~~i~~~~--G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 179 (273)
|.-+-+.. |.. ....++...+.+.++++.+...-+++.+|.-. + +.++..+.+|-.-+.+
T Consensus 83 Adevdvv~~~g~~---------~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~--------l-~~~~i~~a~ria~e~G 144 (203)
T cd00959 83 ADEIDMVINIGAL---------KSGDYEAVYEEIAAVVEACGGAPLKVILETGL--------L-TDEEIIKACEIAIEAG 144 (203)
T ss_pred CCEEEEeecHHHH---------hCCCHHHHHHHHHHHHHhcCCCeEEEEEecCC--------C-CHHHHHHHHHHHHHhC
Confidence 99886643 322 22346777888888888887444566778621 1 3344443332226666
Q ss_pred CCceeEe
Q psy13372 180 ISNVQLQ 186 (273)
Q Consensus 180 ~~~~g~~ 186 (273)
...++..
T Consensus 145 aD~IKTs 151 (203)
T cd00959 145 ADFIKTS 151 (203)
T ss_pred CCEEEcC
Confidence 6666665
No 129
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.52 E-value=11 Score=32.95 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCCeEEecCCCC
Q psy13372 88 ASLEKTIQYACALNIPAIHIMSGKT 112 (273)
Q Consensus 88 ~~~~~~i~~a~~lG~~~i~~~~G~~ 112 (273)
+.....++.+...|+.++.+..|..
T Consensus 228 ~e~~~la~~l~~~G~d~i~vs~g~~ 252 (327)
T cd02803 228 EEAIEIAKALEEAGVDALHVSGGSY 252 (327)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCC
Confidence 4566777788889999999987764
No 130
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=90.47 E-value=4.7 Score=36.62 Aligned_cols=91 Identities=11% Similarity=0.058 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCC--CeEEecCCCCCCCCCCCCCCcchHH
Q psy13372 50 EQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNI--PAIHIMSGKTESSRTQPIASEDPYT 127 (273)
Q Consensus 50 ~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~--~~i~~~~G~~~~~~~~~~~~~~~~~ 127 (273)
.++.+.+++.|+.+..++++.+.. . .+++....+++..+.+++.+..+|. +.+-+..| ++.. ...++
T Consensus 153 ~~~l~~~~~~~l~~~Gih~HiGS~--~-~~~~~~~~a~~~~~~~~~~~~~~g~~l~~ldiGGG-f~~~-------~~~~~ 221 (394)
T cd06831 153 RHLLECAKELDVQIVGVKFHVSSS--C-KEYQTYVHALSDARCVFDMAEEFGFKMNMLDIGGG-FTGS-------EIQLE 221 (394)
T ss_pred HHHHHHHHHCCCeEEEEEEECCCC--C-CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEeCCC-cCCC-------CCCHH
Confidence 456666788899999988765421 1 3566677777778889999998875 56666544 4321 12466
Q ss_pred HHHHHHHHHHHHHh--hCCcEEEEcc
Q psy13372 128 TLKENLIYACAELE--RHSLTALIEP 151 (273)
Q Consensus 128 ~~~~~l~~l~~~a~--~~gv~i~lE~ 151 (273)
.+.+.++++.+..- ..++++.+||
T Consensus 222 ~~~~~i~~~l~~~~~~~~~~~li~EP 247 (394)
T cd06831 222 EVNHVIRPLLDVYFPEGSGIQIIAEP 247 (394)
T ss_pred HHHHHHHHHHHHhcCcCCCCEEEEeC
Confidence 67777766665432 2368999998
No 131
>PRK08005 epimerase; Validated
Probab=89.84 E-value=7.1 Score=32.13 Aligned_cols=196 Identities=13% Similarity=0.076 Sum_probs=102.4
Q ss_pred ccccccccccccccccCHHHHHHHHHHcCCCeEEecCC---CC---CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCC
Q psy13372 6 FKLAANLTLLFNDLAANYLDKYRVAAELGFRYIESWFP---PV---GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAV 79 (273)
Q Consensus 6 ~k~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~---~~---~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~ 79 (273)
|+++.|. +..... .+.+.++.+.+.|++.+.+..- +- ...++.++++.+...+.+..+-+- .+
T Consensus 1 ~~i~pSi-l~ad~~--~l~~el~~l~~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv--------~~ 69 (210)
T PRK08005 1 MILHPSL-ASADPL--RYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHPLSFHLMV--------SS 69 (210)
T ss_pred CEEEeeh-hhCCHH--HHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHHHhcCCCCeEEEecc--------CC
Confidence 3455444 333334 7899999999999999988842 10 134556666555455555443221 23
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCC
Q psy13372 80 KGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPG 159 (273)
Q Consensus 80 ~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~ 159 (273)
|+ +.++.....|+..|.+|.= .. ..+.++.+..++.|++.++=- + |.
T Consensus 70 P~----------~~i~~~~~~gad~It~H~E---a~---------------~~~~~~l~~Ik~~G~k~GlAl-n----P~ 116 (210)
T PRK08005 70 PQ----------RWLPWLAAIRPGWIFIHAE---SV---------------QNPSEILADIRAIGAKAGLAL-N----PA 116 (210)
T ss_pred HH----------HHHHHHHHhCCCEEEEccc---Cc---------------cCHHHHHHHHHHcCCcEEEEE-C----CC
Confidence 32 2555556689999999851 11 123345566666777655442 1 22
Q ss_pred cccCCHHHHHHHHHHHhhcCCCceeEeeeccccccc-CCChHHHHHhcCCcceeEEeccCCCCCCCCCCCcccHHHHHHH
Q psy13372 160 YYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRI-CGDLTHTFGACRDLIGHVQIAQAPDRQEPHARGEIDYAYVFEL 238 (273)
Q Consensus 160 ~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~-~~~~~~~i~~~~~~i~~vHi~d~~~~~~~g~~G~id~~~i~~~ 238 (273)
++.+....++ ..++ --+-++.+.|..-.. -.+..+-++++...+... ...-+|-++...+ ..
T Consensus 117 ---Tp~~~i~~~l---~~vD-~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~---------~I~VDGGI~~~~i-~~ 179 (210)
T PRK08005 117 ---TPLLPYRYLA---LQLD-ALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAA---------ECWADGGITLRAA-RL 179 (210)
T ss_pred ---CCHHHHHHHH---HhcC-EEEEEEecCCCccceecHHHHHHHHHHHHhcccC---------CEEEECCCCHHHH-HH
Confidence 3455556666 5553 124555555544110 011222333332222110 1222288886655 46
Q ss_pred HHHcCCCceEEEe--eecCCChHHHHH
Q psy13372 239 LAREGYEGYVGLE--YKPQGNTKEGLE 263 (273)
Q Consensus 239 L~~~gy~g~~~lE--~~~~~~~~~~~~ 263 (273)
+.+.|-+. +++- ++...+..+.++
T Consensus 180 l~~aGad~-~V~GsaiF~~~d~~~~~~ 205 (210)
T PRK08005 180 LAAAGAQH-LVIGRALFTTANYDVTLS 205 (210)
T ss_pred HHHCCCCE-EEEChHhhCCCCHHHHHH
Confidence 77788873 3332 233445566555
No 132
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=89.78 E-value=14 Score=32.74 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHcCCCeEEecC
Q psy13372 22 NYLDKYRVAAELGFRYIESWF 42 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~ 42 (273)
.+.++.+.+++.|||+||++.
T Consensus 155 ~~~~aA~~a~~aGfDgVei~~ 175 (336)
T cd02932 155 AFVAAARRAVEAGFDVIEIHA 175 (336)
T ss_pred HHHHHHHHHHHcCCCEEEEcc
Confidence 455666778889999999984
No 133
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.73 E-value=10 Score=31.26 Aligned_cols=155 Identities=15% Similarity=0.080 Sum_probs=91.9
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCC--eeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGL--KQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACA 99 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 99 (273)
......+.+.+.|+..+|+.+... ...+.++++.++++- .+. ++. +-. + ++ ..++.|..
T Consensus 26 ~a~~~~~al~~~Gi~~iEit~~~~-~a~~~i~~l~~~~~~~p~~~-vGa---GTV-~--~~-----------~~~~~a~~ 86 (213)
T PRK06552 26 EALKISLAVIKGGIKAIEVTYTNP-FASEVIKELVELYKDDPEVL-IGA---GTV-L--DA-----------VTARLAIL 86 (213)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCc-cHHHHHHHHHHHcCCCCCeE-Eee---eeC-C--CH-----------HHHHHHHH
Confidence 445556677888999999998743 556777777777742 121 211 011 1 12 23456677
Q ss_pred cCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcC
Q psy13372 100 LNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHG 179 (273)
Q Consensus 100 lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 179 (273)
.|+++++.+. .. .++++.++++|+.+. |+ ..|+.++.+.. +.+
T Consensus 87 aGA~FivsP~-~~---------------------~~v~~~~~~~~i~~i---------PG--~~T~~E~~~A~----~~G 129 (213)
T PRK06552 87 AGAQFIVSPS-FN---------------------RETAKICNLYQIPYL---------PG--CMTVTEIVTAL----EAG 129 (213)
T ss_pred cCCCEEECCC-CC---------------------HHHHHHHHHcCCCEE---------CC--cCCHHHHHHHH----HcC
Confidence 9999999642 11 246778889999877 34 44777877766 356
Q ss_pred CCceeEeeecccccccCCChHHHHHhcCCcceeEEeccCCCCCCCCCCCcccHHHHHHHHHHcCCCceEE
Q psy13372 180 ISNVQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAPDRQEPHARGEIDYAYVFELLAREGYEGYVG 249 (273)
Q Consensus 180 ~~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~~vHi~d~~~~~~~g~~G~id~~~i~~~L~~~gy~g~~~ 249 (273)
...+++ +.....| .+.++.+.....++.+.= . |-++...+-+.++ .|.++..+
T Consensus 130 ad~vkl----FPa~~~G---~~~ik~l~~~~p~ip~~a--------t-GGI~~~N~~~~l~-aGa~~vav 182 (213)
T PRK06552 130 SEIVKL----FPGSTLG---PSFIKAIKGPLPQVNVMV--------T-GGVNLDNVKDWFA-AGADAVGI 182 (213)
T ss_pred CCEEEE----CCcccCC---HHHHHHHhhhCCCCEEEE--------E-CCCCHHHHHHHHH-CCCcEEEE
Confidence 677886 3332223 344555443333333332 2 7777776666665 77766433
No 134
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=89.64 E-value=4.4 Score=33.83 Aligned_cols=146 Identities=15% Similarity=0.120 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchh-HHHHHHHHHHHHHHHHHc
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGK-ESEFRASLEKTIQYACAL 100 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~a~~l 100 (273)
++...++.+.+.|+++|-+... -....+..+...+..+..+-.+. .|....+.. ++ .....++.|.++
T Consensus 20 ~~~~~~~~a~~~~~~av~v~p~----~~~~~~~~~~~~~~~~~~vi~fp---~g~~~~~~k~~~----~~~~~ve~A~~~ 88 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCVTPG----YVKPAAELLAGSGVKVGLVIGFP---FGTSTTEPKGYD----QIVAEVEEAIRL 88 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEEEGG----GHHHHHHHSTTSTSEEEEEESTT---TSSSTHHHHTCE----EEHHHHHHHHHT
T ss_pred hHHHHHHHHHHhCCCEEEECHH----HHHHHHHHhhccccccceEEEeC---CCCCcccccccc----chHHHHHHHHHc
Confidence 6788899999999999998633 34556666666666776553321 111111100 00 004567778889
Q ss_pred CCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCC-CCcc-cCCHHHHHHHHHHHhhc
Q psy13372 101 NIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSV-PGYY-LSSFRVAERLIRELRAH 178 (273)
Q Consensus 101 G~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~-~~~~-~~~~~~~~~li~~~~~~ 178 (273)
||..|-+..... .. ....++...+.++++++.++++|+.+.+|+...... .+.. ......+.++. .+.
T Consensus 89 GAd~vd~vi~~~-~~------~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria---~e~ 158 (236)
T PF01791_consen 89 GADEVDVVINYG-AL------GSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIA---AEL 158 (236)
T ss_dssp T-SEEEEEEEHH-HH------HTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHH---HHT
T ss_pred CCceeeeecccc-cc------ccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHH---HHh
Confidence 999876643211 11 123488899999999999999999999996432100 0000 00123444555 667
Q ss_pred CCCceeEeee
Q psy13372 179 GISNVQLQFD 188 (273)
Q Consensus 179 ~~~~~g~~~D 188 (273)
+..-++...=
T Consensus 159 GaD~vKt~tg 168 (236)
T PF01791_consen 159 GADFVKTSTG 168 (236)
T ss_dssp T-SEEEEE-S
T ss_pred CCCEEEecCC
Confidence 7666665543
No 135
>PRK10812 putative DNAse; Provisional
Probab=89.61 E-value=8.1 Score=33.01 Aligned_cols=138 Identities=7% Similarity=-0.047 Sum_probs=78.2
Q ss_pred cCHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHc
Q psy13372 21 ANYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACAL 100 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l 100 (273)
.+.++.++.+++.|...+=..+.. ..+..+..++.+++.--..+++.... .... +..++.+.+. +..
T Consensus 20 ~d~~~vl~~a~~~gv~~~~~~~~~-~~~~~~~~~l~~~~~~v~~~~GiHP~----~~~~----~~~~~~l~~~---~~~- 86 (265)
T PRK10812 20 KDVDDVLAKAAARDVKFCLAVATT-LPGYRHMRDLVGERDNVVFSCGVHPL----NQDE----PYDVEELRRL---AAE- 86 (265)
T ss_pred cCHHHHHHHHHHcCCCEEEEeCCC-HHHHHHHHHHHhhCCCeEEEEEeCCC----CCCC----hhHHHHHHHH---hcC-
Confidence 378999999999999876554332 24456677777777643344554321 1111 1123333332 221
Q ss_pred CCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCC
Q psy13372 101 NIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGI 180 (273)
Q Consensus 101 G~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 180 (273)
-+.+.+ |..+-+.. . .....+...+.+++.+++|+++|..+.++.-. ..++.++++ ++.+.
T Consensus 87 -~~vvaI--GEiGLD~~--~-~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r~----------a~~~~l~iL---~~~~~ 147 (265)
T PRK10812 87 -EGVVAM--GETGLDYY--Y-TPETKVRQQESFRHHIQIGRELNKPVIVHTRD----------ARADTLAIL---REEKV 147 (265)
T ss_pred -CCEEEE--EeeecCcC--C-CCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeC----------chHHHHHHH---HhhcC
Confidence 233333 33222210 0 11235677789999999999999999999732 235778888 76543
Q ss_pred CceeEeeeccccc
Q psy13372 181 SNVQLQFDFFNAQ 193 (273)
Q Consensus 181 ~~~g~~~D~~h~~ 193 (273)
+..+.. .|+.
T Consensus 148 ~~~~~v---~H~f 157 (265)
T PRK10812 148 TDCGGV---LHCF 157 (265)
T ss_pred CCCCEE---EEee
Confidence 333332 5665
No 136
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=89.52 E-value=5.5 Score=33.70 Aligned_cols=127 Identities=19% Similarity=0.160 Sum_probs=75.2
Q ss_pred HHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHH
Q psy13372 93 TIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLI 172 (273)
Q Consensus 93 ~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li 172 (273)
-|..|..+||..|-+.....+ -+.|.++.++|++.|+...+|.+ +.+++.+.+
T Consensus 121 QI~~Ar~~GADavLLI~~~L~----------------~~~l~el~~~A~~LGm~~LVEVh-----------~~eEl~rAl 173 (254)
T COG0134 121 QIYEARAAGADAVLLIVAALD----------------DEQLEELVDRAHELGMEVLVEVH-----------NEEELERAL 173 (254)
T ss_pred HHHHHHHcCcccHHHHHHhcC----------------HHHHHHHHHHHHHcCCeeEEEEC-----------CHHHHHHHH
Confidence 356667777777665443221 12588999999999999999974 456777777
Q ss_pred HHHhhcCCCceeEeeecccccccCCChHHHHHhcCCcce--eEEeccCCCCCCCCCCCcccHHHHHHHHHHcCCCceEEE
Q psy13372 173 RELRAHGISNVQLQFDFFNAQRICGDLTHTFGACRDLIG--HVQIAQAPDRQEPHARGEIDYAYVFELLAREGYEGYVGL 250 (273)
Q Consensus 173 ~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~--~vHi~d~~~~~~~g~~G~id~~~i~~~L~~~gy~g~~~l 250 (273)
+ .+.+=+|++==--|.. .-|+.. -.++.+.+. .+-++.. |.-...++ ..+.+.|.+|.++=
T Consensus 174 ---~-~ga~iIGINnRdL~tf--~vdl~~-t~~la~~~p~~~~~IsES---------GI~~~~dv-~~l~~~ga~a~LVG 236 (254)
T COG0134 174 ---K-LGAKIIGINNRDLTTL--EVDLET-TEKLAPLIPKDVILISES---------GISTPEDV-RRLAKAGADAFLVG 236 (254)
T ss_pred ---h-CCCCEEEEeCCCcchh--eecHHH-HHHHHhhCCCCcEEEecC---------CCCCHHHH-HHHHHcCCCEEEec
Confidence 6 7666677653212211 222222 223333322 2223322 55556555 45666899999887
Q ss_pred eee-cCCChHHHHH
Q psy13372 251 EYK-PQGNTKEGLE 263 (273)
Q Consensus 251 E~~-~~~~~~~~~~ 263 (273)
|.. ...++.+.++
T Consensus 237 ~slM~~~~~~~a~~ 250 (254)
T COG0134 237 EALMRADDPEEALR 250 (254)
T ss_pred HHHhcCCCHHHHHH
Confidence 743 3455666555
No 137
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=89.14 E-value=11 Score=30.96 Aligned_cols=132 Identities=9% Similarity=0.044 Sum_probs=80.1
Q ss_pred cCHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEe-cCCccccCCCCCchhHHHHHHHHHHHHHHHHH
Q psy13372 21 ANYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLIN-TEVDENFGYAAVKGKESEFRASLEKTIQYACA 99 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 99 (273)
.++.+.++.+.++||.+|=+. | ...+..++.++..++.+.+.- +|. |..+.. .-..-++.|.+
T Consensus 18 ~~i~~lc~~A~~~~~~avcv~-p---~~v~~a~~~l~~~~v~v~tVigFP~----G~~~~~--------~K~~E~~~Av~ 81 (211)
T TIGR00126 18 EDIITLCAQAKTYKFAAVCVN-P---SYVPLAKELLKGTEVRICTVVGFPL----GASTTD--------VKLYETKEAIK 81 (211)
T ss_pred HHHHHHHHHHHhhCCcEEEeC-H---HHHHHHHHHcCCCCCeEEEEeCCCC----CCCcHH--------HHHHHHHHHHH
Confidence 367788889999999998884 2 345677777877788888653 332 232211 11123355777
Q ss_pred cCCCeEEec--CCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhh
Q psy13372 100 LNIPAIHIM--SGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRA 177 (273)
Q Consensus 100 lG~~~i~~~--~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~ 177 (273)
+||.-+-+. .|.. ....++...+-++++.+.+...-+++.+|.- ++.+ ++..+.+|-.-+
T Consensus 82 ~GAdEiDvv~n~g~l---------~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~--------~L~~-~ei~~a~~ia~e 143 (211)
T TIGR00126 82 YGADEVDMVINIGAL---------KDGNEEVVYDDIRAVVEACAGVLLKVIIETG--------LLTD-EEIRKACEICID 143 (211)
T ss_pred cCCCEEEeecchHhh---------hCCcHHHHHHHHHHHHHHcCCCeEEEEEecC--------CCCH-HHHHHHHHHHHH
Confidence 999987553 3333 2345778888888888877634467888862 2322 344444422255
Q ss_pred cCCCceeEe
Q psy13372 178 HGISNVQLQ 186 (273)
Q Consensus 178 ~~~~~~g~~ 186 (273)
.+...++..
T Consensus 144 aGADfvKTs 152 (211)
T TIGR00126 144 AGADFVKTS 152 (211)
T ss_pred hCCCEEEeC
Confidence 555555543
No 138
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=88.99 E-value=5 Score=32.79 Aligned_cols=82 Identities=13% Similarity=0.045 Sum_probs=49.6
Q ss_pred cccccccccccccccCHHHHHHHHHHcCCCeEEecCC---CC---CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCc
Q psy13372 7 KLAANLTLLFNDLAANYLDKYRVAAELGFRYIESWFP---PV---GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVK 80 (273)
Q Consensus 7 k~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~---~~---~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~ 80 (273)
|++.|. +..... .+.+.++.+.+.|.+.+.+..- +- ...++.++++.+...+.+..+-+- .+|
T Consensus 1 kI~pSi-l~ad~~--~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~~~~~~DvHLMv--------~~P 69 (201)
T PF00834_consen 1 KISPSI-LSADFL--NLEEEIKRLEEAGADWLHIDIMDGHFVPNLTFGPDIIKAIRKITDLPLDVHLMV--------ENP 69 (201)
T ss_dssp EEEEBG-GGS-GG--GHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTTSSSEEEEEEES--------SSG
T ss_pred Ceehhh-hhCCHH--HHHHHHHHHHHcCCCEEEEeecccccCCcccCCHHHHHHHhhcCCCcEEEEeee--------ccH
Confidence 455555 344445 8899999999999999988742 21 144566666655555666655432 234
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCeEEecC
Q psy13372 81 GKESEFRASLEKTIQYACALNIPAIHIMS 109 (273)
Q Consensus 81 ~~~~~~~~~~~~~i~~a~~lG~~~i~~~~ 109 (273)
+ +.++.....|+..|.+|.
T Consensus 70 ~----------~~i~~~~~~g~~~i~~H~ 88 (201)
T PF00834_consen 70 E----------RYIEEFAEAGADYITFHA 88 (201)
T ss_dssp G----------GHHHHHHHHT-SEEEEEG
T ss_pred H----------HHHHHHHhcCCCEEEEcc
Confidence 3 244455667999999985
No 139
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=88.98 E-value=9.7 Score=35.23 Aligned_cols=106 Identities=13% Similarity=0.016 Sum_probs=67.6
Q ss_pred HHHHHHHHHHcCCCeEEecCCC-CCCCHHHHHHHHHHcCCeeEE-EecCCccccCCCCCchhHHHHHHHHHHHHHHHHHc
Q psy13372 23 YLDKYRVAAELGFRYIESWFPP-VGVTLEQLVAAQTRHGLKQVL-INTEVDENFGYAAVKGKESEFRASLEKTIQYACAL 100 (273)
Q Consensus 23 ~~~~l~~~~~~G~~~vEl~~~~-~~~~~~~~~~~l~~~gL~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l 100 (273)
..+.++.+.+.|.+.|.+..+. +.....+..+.++++|+.+.. ++.. . + |- ...+++.+.++.+..+
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t-~-----~--p~---~~~~~~~~~a~~l~~~ 166 (448)
T PRK12331 98 VESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYT-T-----S--PV---HTIDYFVKLAKEMQEM 166 (448)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEee-c-----C--CC---CCHHHHHHHHHHHHHc
Confidence 4566788899999999888652 223456667788899987642 3221 1 1 10 2246777788888889
Q ss_pred CCCeEEec--CCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 101 NIPAIHIM--SGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 101 G~~~i~~~--~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
|+..|.+. .|.. .+.....+++.|++ ..++.|.++.|+.
T Consensus 167 Gad~I~i~Dt~G~l---------~P~~v~~lv~alk~------~~~~pi~~H~Hnt 207 (448)
T PRK12331 167 GADSICIKDMAGIL---------TPYVAYELVKRIKE------AVTVPLEVHTHAT 207 (448)
T ss_pred CCCEEEEcCCCCCC---------CHHHHHHHHHHHHH------hcCCeEEEEecCC
Confidence 99999884 2322 33445555555553 2367888887653
No 140
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=88.63 E-value=2.7 Score=37.07 Aligned_cols=64 Identities=9% Similarity=-0.014 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHcCCCeEEecCCCCCCCCC---CCCCC--------------------cchHHHHHHHHHHHHHHHhhC
Q psy13372 87 RASLEKTIQYACALNIPAIHIMSGKTESSRT---QPIAS--------------------EDPYTTLKENLIYACAELERH 143 (273)
Q Consensus 87 ~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~---~~~~~--------------------~~~~~~~~~~l~~l~~~a~~~ 143 (273)
++.+++.|+.++.++.+.+++|... +.... .|... ...--...+-+++++++|+++
T Consensus 16 ~~~ik~~id~ma~~K~N~lhlHltD-~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~r 94 (326)
T cd06564 16 MDFLKDIIKTMSWYKMNDLQLHLND-NLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAKDR 94 (326)
T ss_pred HHHHHHHHHHHHHcCCceEEEeecC-CcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHHHc
Confidence 6789999999999999999988654 11100 01000 011123567899999999999
Q ss_pred CcEEEEcc
Q psy13372 144 SLTALIEP 151 (273)
Q Consensus 144 gv~i~lE~ 151 (273)
||+|..|-
T Consensus 95 gI~vIPEI 102 (326)
T cd06564 95 GVNIIPEI 102 (326)
T ss_pred CCeEeccC
Confidence 99999884
No 141
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=88.49 E-value=12 Score=34.43 Aligned_cols=113 Identities=12% Similarity=-0.030 Sum_probs=67.2
Q ss_pred HHHHHHHHHcCCCeEEecCC-CC---------CCC---HHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFP-PV---------GVT---LEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASL 90 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~-~~---------~~~---~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (273)
++.++.++++|+..|.+... .+ ..+ ..+..+.++++|+.+.++..-.+ +. . ++.+.+
T Consensus 141 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~G----lP---~---qt~e~~ 210 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYG----IP---G---QTHASW 210 (430)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecC----CC---C---CCHHHH
Confidence 67899999999999999853 11 122 33444567788988655443222 21 1 124678
Q ss_pred HHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcE
Q psy13372 91 EKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLT 146 (273)
Q Consensus 91 ~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~ 146 (273)
++.++.+.++|...+.+.+-.......-.......-+...+-++...+...+.|..
T Consensus 211 ~~~l~~~~~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~ 266 (430)
T PRK08208 211 MESLDQALVYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYT 266 (430)
T ss_pred HHHHHHHHhCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 88899999999999988764332221000001111244455566666777777854
No 142
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=88.47 E-value=2.4 Score=37.57 Aligned_cols=116 Identities=9% Similarity=-0.060 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN 101 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG 101 (273)
++...+..+...+.++|=+.-.|+ .... .......||-+. +..+. +.. +.+... ........++.+.++|
T Consensus 50 ~~K~lv~~~l~~~asaILld~~yG-~~a~--~~~~~~~GLil~-~e~tg-~d~---t~~gr~--~~~~~~~sve~a~~~G 119 (340)
T PRK12858 50 DFKLAVSEALTPYASAILLDPEYG-LPAA--KVRDPNCGLLLS-YEKTG-YDA---TAPGRL--PDLLDNWSVRRIKEAG 119 (340)
T ss_pred HHHHHHHHHHhhCCCEEEEccccC-hhhh--cccCCCCCeEEE-ecccc-ccc---CCCCCC--ccccccccHHHHHHcC
Confidence 455566666777888888874343 1111 222245565444 22110 000 001100 0122334466688999
Q ss_pred CCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCC
Q psy13372 102 IPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVN 153 (273)
Q Consensus 102 ~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~ 153 (273)
+..|.++....+.. .++..++..+.+.++.+.++++|+.+.+|++.
T Consensus 120 AdAVk~lv~~~~d~------~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~ 165 (340)
T PRK12858 120 ADAVKLLLYYRPDE------DDAINDRKHAFVERVGAECRANDIPFFLEPLT 165 (340)
T ss_pred CCEEEEEEEeCCCc------chHHHHHHHHHHHHHHHHHHHcCCceEEEEec
Confidence 99988865433221 22335677788999999999999999999644
No 143
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.27 E-value=4.7 Score=35.29 Aligned_cols=65 Identities=15% Similarity=0.072 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchH-HHHHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 85 EFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPY-TTLKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 85 ~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
..+..+.++++...+.|++..++.+.-++... .|. ....| +.+.+.++++.++|+++||++.++|
T Consensus 49 ~Nl~~l~~~L~~n~~~~I~f~RisS~l~P~as-h~~-~~~~~~~~~~~~l~~iG~~a~~~~iRLS~Hp 114 (312)
T TIGR00629 49 ANLRDTMKTLHWNIGHGIPFYRFSSSIFPFAS-HPD-VGYDLVTFAQKELREIGELAKTHQHRLTFHP 114 (312)
T ss_pred HHHHHHHHHHHHHHHcCCcEEecCccccCcCc-Cch-hhhhHHHHHHHHHHHHHHHHHHcCeEEEECC
Confidence 35678889999999999999999776554331 121 12233 4778899999999999999999998
No 144
>PRK08227 autoinducer 2 aldolase; Validated
Probab=88.27 E-value=12 Score=31.97 Aligned_cols=141 Identities=15% Similarity=0.020 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCC-------CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPV-------GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTI 94 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~-------~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (273)
.+.-.++.+-++|.|+|-+....+ -.+..++.+..+++||.+.... +-+.. . .. ..+.+.-+.
T Consensus 95 ~l~~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~-prG~~--~---~~----~~~~ia~aa 164 (264)
T PRK08227 95 AVAVDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVT-AVGKD--M---VR----DARYFSLAT 164 (264)
T ss_pred cceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEe-cCCCC--c---Cc----hHHHHHHHH
Confidence 455557778899999999986532 1234677778899999988733 22211 1 11 123788899
Q ss_pred HHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHH
Q psy13372 95 QYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRE 174 (273)
Q Consensus 95 ~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~ 174 (273)
++|.+|||..|.+.. +. +.++++++ ...+.+.+-- +.-. +.++.++++++
T Consensus 165 RiaaELGADiVK~~y------------~~-------~~f~~vv~---a~~vPVviaG-------G~k~-~~~~~L~~v~~ 214 (264)
T PRK08227 165 RIAAEMGAQIIKTYY------------VE-------EGFERITA---GCPVPIVIAG-------GKKL-PERDALEMCYQ 214 (264)
T ss_pred HHHHHHcCCEEecCC------------CH-------HHHHHHHH---cCCCcEEEeC-------CCCC-CHHHHHHHHHH
Confidence 999999999999853 11 34555555 3456666542 2223 55667777722
Q ss_pred HhhcCCCceeEeeecccccccCCChHHHHHhc
Q psy13372 175 LRAHGISNVQLQFDFFNAQRICGDLTHTFGAC 206 (273)
Q Consensus 175 ~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~ 206 (273)
.++.-.-|+++ |-=.++..++...++.+
T Consensus 215 --ai~aGa~Gv~~--GRNIfQ~~~p~~~~~al 242 (264)
T PRK08227 215 --AIDEGASGVDM--GRNIFQSEHPVAMIKAV 242 (264)
T ss_pred --HHHcCCceeee--chhhhccCCHHHHHHHH
Confidence 22223445543 32222235666655554
No 145
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=88.09 E-value=10 Score=32.51 Aligned_cols=108 Identities=13% Similarity=-0.047 Sum_probs=66.8
Q ss_pred HHHHHHHHHHcCCCeEEecCCCCC-CCHHHHHHHHHHcCCeeEE-EecCCccccCCCCCchhHHHHHHHHHHHHHHHHHc
Q psy13372 23 YLDKYRVAAELGFRYIESWFPPVG-VTLEQLVAAQTRHGLKQVL-INTEVDENFGYAAVKGKESEFRASLEKTIQYACAL 100 (273)
Q Consensus 23 ~~~~l~~~~~~G~~~vEl~~~~~~-~~~~~~~~~l~~~gL~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l 100 (273)
.++-++.+.+.|.+.|-+..+..+ ....+..+.++++|+.+.. ++.... +. .+ .+.+.+.++.+..+
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~---~~-~~-------~~~~~~~~~~~~~~ 161 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGS---PV-HT-------LEYYVKLAKELEDM 161 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCC---CC-CC-------HHHHHHHHHHHHHc
Confidence 466788889999999999876321 2245555778888988763 222110 01 11 35677788888999
Q ss_pred CCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 101 NIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 101 G~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
|+..|.+.- ..+.. .+.....+++.+++ ..++.+.++.|+.
T Consensus 162 Ga~~i~l~D-T~G~~------~P~~v~~lv~~l~~------~~~~~l~~H~Hnd 202 (275)
T cd07937 162 GADSICIKD-MAGLL------TPYAAYELVKALKK------EVGLPIHLHTHDT 202 (275)
T ss_pred CCCEEEEcC-CCCCC------CHHHHHHHHHHHHH------hCCCeEEEEecCC
Confidence 999998852 11121 33444455554443 2347888888654
No 146
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=87.86 E-value=2.3 Score=37.91 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHcCCCeEEecCCCC-CCCCCCCCCCcchHH---------HHHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 87 RASLEKTIQYACALNIPAIHIMSGKT-ESSRTQPIASEDPYT---------TLKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 87 ~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~~~~~~~~~~~~~---------~~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
++.+++.|+..+.++.+.+++|.-.. +.....+ ..++..+ ...+-+++++++|+++||+|..|-
T Consensus 17 ~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~-~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 17 VDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESP-SYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEI 90 (348)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeC-CCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEec
Confidence 67899999999999999999985321 1100000 0111111 356779999999999999999995
No 147
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=87.68 E-value=16 Score=30.99 Aligned_cols=130 Identities=9% Similarity=0.025 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN 101 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG 101 (273)
+.++.++.+++.|...+=..... ..+.++..++.+++.--..+++.... . .... .+...+.++..++. ..
T Consensus 20 ~~~~~l~~a~~~gv~~~~~~~~~-~~~~~~~~~l~~~~~~v~~~~GiHP~-~--~~~~---~~~~~~~l~~~l~~---~~ 89 (258)
T PRK11449 20 DEEASLQRAAQAGVGKIIVPATE-AENFARVLALAERYQPLYAALGLHPG-M--LEKH---SDVSLDQLQQALER---RP 89 (258)
T ss_pred CHHHHHHHHHHCCCCEEEEeeCC-HHHHHHHHHHHHhCCCEEEEEeeCcC-c--cccC---CHHHHHHHHHHHHh---CC
Confidence 67899999999998877554332 13455666777777643344444221 1 1111 11223444433321 11
Q ss_pred CCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcC
Q psy13372 102 IPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHG 179 (273)
Q Consensus 102 ~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 179 (273)
-+.+.+ |-.+-+.. . ....++...+.+.+-+++|++++..+.|+... ..+++.+++ +..+
T Consensus 90 ~~~~aI--GEiGLD~~-~--~~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~----------a~~~~~~il---~~~~ 149 (258)
T PRK11449 90 AKVVAV--GEIGLDLF-G--DDPQFERQQWLLDEQLKLAKRYDLPVILHSRR----------THDKLAMHL---KRHD 149 (258)
T ss_pred CCEEEE--EecccCCC-C--CCCCHHHHHHHHHHHHHHHHHhCCCEEEEecC----------ccHHHHHHH---HhcC
Confidence 123333 33322210 0 12235667789999999999999999999732 346778888 7654
No 148
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=87.55 E-value=3.1 Score=35.65 Aligned_cols=98 Identities=10% Similarity=0.085 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCC-CCCcccCCH
Q psy13372 87 RASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHS-VPGYYLSSF 165 (273)
Q Consensus 87 ~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~-~~~~~~~~~ 165 (273)
.+..++.|++|+++|.+++.+-.|......+.. ..-....--.-|.+|+++|+++||.|.|=-+.... ....+-...
T Consensus 31 t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~--~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~ 108 (273)
T PF10566_consen 31 TETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDD--FDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQL 108 (273)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT----TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCH
T ss_pred HHHHHHHHHHHHHcCCCEEEecccccccccccc--ccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHH
Confidence 567889999999999999999766542110000 00000011145889999999999876654432110 000022234
Q ss_pred HHHHHHHHHHhhcCCCceeEeeeccc
Q psy13372 166 RVAERLIRELRAHGISNVQLQFDFFN 191 (273)
Q Consensus 166 ~~~~~li~~~~~~~~~~~g~~~D~~h 191 (273)
+++...+ ++.+- -|+=+|+..
T Consensus 109 ~~~f~~~---~~~Gv--~GvKidF~~ 129 (273)
T PF10566_consen 109 DEAFKLY---AKWGV--KGVKIDFMD 129 (273)
T ss_dssp HHHHHHH---HHCTE--EEEEEE--S
T ss_pred HHHHHHH---HHcCC--CEEeeCcCC
Confidence 6667777 87753 456666644
No 149
>PLN02540 methylenetetrahydrofolate reductase
Probab=87.48 E-value=14 Score=35.14 Aligned_cols=119 Identities=8% Similarity=0.056 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCCC---CHHHHHHHHH-HcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVGV---TLEQLVAAQT-RHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYA 97 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~~---~~~~~~~~l~-~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 97 (273)
.+.+.++.++++|=+.|.+.+..+.. ..-++.+.++ ..|+++..+-+- .+. ....+...+..|
T Consensus 16 nL~~~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTC----rd~---------n~~~L~~~L~~a 82 (565)
T PLN02540 16 NLFERMDRMVAHGPLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTC----TNM---------PVEKIDHALETI 82 (565)
T ss_pred HHHHHHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeee----cCC---------CHHHHHHHHHHH
Confidence 57788899999999999998653211 1234444445 459998865331 101 134678899999
Q ss_pred HHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhh-CCcEEEEccCC
Q psy13372 98 CALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELER-HSLTALIEPVN 153 (273)
Q Consensus 98 ~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~-~gv~i~lE~~~ 153 (273)
+.+|++.|-+..|..+...+.....+..+...++-++.+.+...+ .+|-++--|..
T Consensus 83 ~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEg 139 (565)
T PLN02540 83 KSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEA 139 (565)
T ss_pred HHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCC
Confidence 999999998888876543110000123344444444444433222 45555544433
No 150
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=87.46 E-value=9.8 Score=32.84 Aligned_cols=80 Identities=13% Similarity=0.177 Sum_probs=56.7
Q ss_pred HHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCc---EEEEccCCCCCCCCcccCCHHHHH
Q psy13372 93 TIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSL---TALIEPVNQHSVPGYYLSSFRVAE 169 (273)
Q Consensus 93 ~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv---~i~lE~~~~~~~~~~~~~~~~~~~ 169 (273)
.++.++..|+..|.+|.-+.+........+++..+.+.+.|.+..+.|.+.|| +|.+-|- -.|..+.++..
T Consensus 125 ~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPG------iGF~k~~~~n~ 198 (282)
T PRK11613 125 ALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLLDPG------FGFGKNLSHNY 198 (282)
T ss_pred HHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCC------CCcCCCHHHHH
Confidence 45556788999999986322221000111456677888899999999999999 8999982 12778889999
Q ss_pred HHHHHHhhc
Q psy13372 170 RLIRELRAH 178 (273)
Q Consensus 170 ~li~~~~~~ 178 (273)
++++.|+.+
T Consensus 199 ~ll~~l~~l 207 (282)
T PRK11613 199 QLLARLAEF 207 (282)
T ss_pred HHHHHHHHH
Confidence 999666555
No 151
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=87.23 E-value=9.2 Score=36.71 Aligned_cols=106 Identities=9% Similarity=-0.026 Sum_probs=68.2
Q ss_pred HHHHHHHHHHcCCCeEEecCCCC-CCCHHHHHHHHHHcCCeeEE-EecCCccccCCCCCchhHHHHHHHHHHHHHHHHHc
Q psy13372 23 YLDKYRVAAELGFRYIESWFPPV-GVTLEQLVAAQTRHGLKQVL-INTEVDENFGYAAVKGKESEFRASLEKTIQYACAL 100 (273)
Q Consensus 23 ~~~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~l~~~gL~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l 100 (273)
....++.+++.|.+.|-+..... -.......+..+++|+.+.. ++.. . .|. ...+++.+.++.+..+
T Consensus 99 v~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt------~--~p~---~~~~~~~~~a~~l~~~ 167 (593)
T PRK14040 99 VERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYT------T--SPV---HTLQTWVDLAKQLEDM 167 (593)
T ss_pred HHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEe------e--CCc---cCHHHHHHHHHHHHHc
Confidence 45668899999999998875422 12344556778889987532 3211 0 111 1367888888888999
Q ss_pred CCCeEEec--CCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 101 NIPAIHIM--SGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 101 G~~~i~~~--~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
|+..|.+. .|.. .+.....+++.|++ ..++.|.++.|+.
T Consensus 168 Gad~i~i~Dt~G~l---------~P~~~~~lv~~lk~------~~~~pi~~H~Hnt 208 (593)
T PRK14040 168 GVDSLCIKDMAGLL---------KPYAAYELVSRIKK------RVDVPLHLHCHAT 208 (593)
T ss_pred CCCEEEECCCCCCc---------CHHHHHHHHHHHHH------hcCCeEEEEECCC
Confidence 99999885 2332 34455566666653 2368888888654
No 152
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=87.23 E-value=18 Score=30.90 Aligned_cols=90 Identities=11% Similarity=0.092 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCc---EEEEccCCCCCCCCcccCCHH
Q psy13372 90 LEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSL---TALIEPVNQHSVPGYYLSSFR 166 (273)
Q Consensus 90 ~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv---~i~lE~~~~~~~~~~~~~~~~ 166 (273)
....++++++.|++.|.++....+. +...+...+.+.++.+.+.++|| .|.+-|.- +.+..+.+
T Consensus 105 ~~~~~~l~~~~g~~vv~m~~~~~g~--------P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi-----~~~~~~~~ 171 (261)
T PRK07535 105 LEVVLPLVKKYNAPVVALTMDDTGI--------PKDAEDRLAVAKELVEKADEYGIPPEDIYIDPLV-----LPLSAAQD 171 (261)
T ss_pred CHHHHHHHHHhCCCEEEEecCCCCC--------CCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCC-----CcccCChH
Confidence 4467788888899988877532211 12234456778888888899999 68888732 22344455
Q ss_pred HHHHHHHHHhhcC--CCceeEeeecccc
Q psy13372 167 VAERLIRELRAHG--ISNVQLQFDFFNA 192 (273)
Q Consensus 167 ~~~~li~~~~~~~--~~~~g~~~D~~h~ 192 (273)
+..++++.++.+. .|.+-+++=+++.
T Consensus 172 ~~~~~l~~i~~l~~~~pg~p~l~G~Sn~ 199 (261)
T PRK07535 172 AGPEVLETIRRIKELYPKVHTTCGLSNI 199 (261)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCCC
Confidence 5544442223332 1344444444443
No 153
>PRK03906 mannonate dehydratase; Provisional
Probab=87.11 E-value=2.6 Score=38.05 Aligned_cols=85 Identities=14% Similarity=0.082 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHcCCCeEEecC---CCC----CCCHHHHHHHHHHcCCeeEEEec-CCccccCCCCCchhHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWF---PPV----GVTLEQLVAAQTRHGLKQVLINT-EVDENFGYAAVKGKESEFRASLEKT 93 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~---~~~----~~~~~~~~~~l~~~gL~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (273)
+-...++.+++.|.++|--.. |.+ ...+.++++.++++||+...+-. +.....-+ ....|++.++++++.
T Consensus 11 ~d~~~l~~~rQ~G~~~iv~~l~~~~~g~~W~~~~i~~~~~~ie~~Gl~~~vvEs~pv~~~Ik~--g~~~rd~~ie~y~~s 88 (385)
T PRK03906 11 NDPVTLEDIRQPGATGIVTALHDIPVGEVWPVEEILARKAEIEAAGLEWSVVESVPVHEDIKT--GTPNRDRYIENYKQT 88 (385)
T ss_pred CCcchHHHHhcCCCCceeecCCCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCCccHHHHc--CCCCHHHHHHHHHHH
Confidence 346678889999999998554 222 23467888999999999998643 32211101 123678889999999
Q ss_pred HHHHHHcCCCeEEec
Q psy13372 94 IQYACALNIPAIHIM 108 (273)
Q Consensus 94 i~~a~~lG~~~i~~~ 108 (273)
|+.+...|++.+...
T Consensus 89 irnlg~~GI~~icYn 103 (385)
T PRK03906 89 LRNLAAAGIKVVCYN 103 (385)
T ss_pred HHHHHhcCCcEEEec
Confidence 999999999987653
No 154
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=87.05 E-value=6 Score=36.74 Aligned_cols=107 Identities=12% Similarity=0.033 Sum_probs=66.1
Q ss_pred HHHHHHHHHHcCCCeEEecCCCC-CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC
Q psy13372 23 YLDKYRVAAELGFRYIESWFPPV-GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN 101 (273)
Q Consensus 23 ~~~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG 101 (273)
.+..++.+.+.|.+.|-+..+.. ......-.+.++++|+.+...-.+. .+ | ....+++.+.++.+..+|
T Consensus 97 v~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t-----~~--p---~~t~e~~~~~a~~l~~~G 166 (467)
T PRK14041 97 VELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYT-----VS--P---VHTLEYYLEFARELVDMG 166 (467)
T ss_pred hHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEec-----cC--C---CCCHHHHHHHHHHHHHcC
Confidence 34457888999999988876532 1234445567788898776321111 11 1 112567778888888899
Q ss_pred CCeEEec--CCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 102 IPAIHIM--SGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 102 ~~~i~~~--~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
+..|.+. .|.. .+.....+++.|++ +.++.|.++.|+.
T Consensus 167 ad~I~i~Dt~G~l---------~P~~v~~Lv~~lk~------~~~vpI~~H~Hnt 206 (467)
T PRK14041 167 VDSICIKDMAGLL---------TPKRAYELVKALKK------KFGVPVEVHSHCT 206 (467)
T ss_pred CCEEEECCccCCc---------CHHHHHHHHHHHHH------hcCCceEEEecCC
Confidence 9999884 2322 33445555655553 3467888887653
No 155
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=87.04 E-value=10 Score=34.18 Aligned_cols=106 Identities=10% Similarity=0.046 Sum_probs=63.7
Q ss_pred HHHHHHHHHcCCCeEEecCCCC--------CCC-------HHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFPPV--------GVT-------LEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRA 88 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~--------~~~-------~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (273)
.+-++.+.+.|++.|.+..+-. ..+ ..+..+.+++.|+.+..-.... +- .+ .+
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~----~r-~~-------~~ 145 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDA----SR-TD-------LD 145 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccC----CC-CC-------HH
Confidence 4457788889999999886521 011 2345556788899876432111 01 11 36
Q ss_pred HHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 89 SLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 89 ~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
++.+.++.+.++|+..|.+.-. .+.. .+.....+++.+++ . .++.+.++.|+.
T Consensus 146 ~l~~~~~~~~~~Ga~~I~l~DT-~G~~------~P~~v~~lv~~l~~---~---~~~~l~~H~Hnd 198 (378)
T PRK11858 146 FLIEFAKAAEEAGADRVRFCDT-VGIL------DPFTMYELVKELVE---A---VDIPIEVHCHND 198 (378)
T ss_pred HHHHHHHHHHhCCCCEEEEecc-CCCC------CHHHHHHHHHHHHH---h---cCCeEEEEecCC
Confidence 7788888889999999988521 1222 33444444444443 2 267888887653
No 156
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=87.04 E-value=11 Score=33.85 Aligned_cols=156 Identities=13% Similarity=0.125 Sum_probs=76.3
Q ss_pred HHHHHHHHHHcCCCeEEec--CCCCC-----CCHHHHHHHHHHcCCeeEE-EecCCccccCCCCCchhHHHHHHHHHHHH
Q psy13372 23 YLDKYRVAAELGFRYIESW--FPPVG-----VTLEQLVAAQTRHGLKQVL-INTEVDENFGYAAVKGKESEFRASLEKTI 94 (273)
Q Consensus 23 ~~~~l~~~~~~G~~~vEl~--~~~~~-----~~~~~~~~~l~~~gL~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (273)
..+-++.++++||+.|=-. .|.+. ...+++.+.++++|+++.. ++...-...|.+.+ -+
T Consensus 16 ~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~~-------------dl 82 (357)
T PF05913_consen 16 NKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKKLGISYD-------------DL 82 (357)
T ss_dssp HHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BTT-------------BT
T ss_pred HHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHH-------------HH
Confidence 5566888999999988433 44321 1246778889999999985 33211111222111 12
Q ss_pred HHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHH
Q psy13372 95 QYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRE 174 (273)
Q Consensus 95 ~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~ 174 (273)
...+.+|+..+++-.|.- . .+++.+.+. |++|.+=- + ++ +.+.+..++
T Consensus 83 ~~~~~lGi~~lRlD~Gf~-~-------------------~~ia~ls~n-g~~I~LNA-S------ti--~~~~l~~L~-- 130 (357)
T PF05913_consen 83 SFFKELGIDGLRLDYGFS-G-------------------EEIAKLSKN-GIKIELNA-S------TI--TEEELDELI-- 130 (357)
T ss_dssp HHHHHHT-SEEEESSS-S-C-------------------HHHHHHTTT--SEEEEET-T------T----CCHHHHHC--
T ss_pred HHHHHcCCCEEEECCCCC-H-------------------HHHHHHHhC-CCEEEEEC-C------CC--ChHHHHHHH--
Confidence 344669999999965532 1 234556666 88877642 1 11 233333444
Q ss_pred Hhhc-CCCceeEeeecccccccCCChH------HHHHhcCCcceeEEeccCCCCCCC
Q psy13372 175 LRAH-GISNVQLQFDFFNAQRICGDLT------HTFGACRDLIGHVQIAQAPDRQEP 224 (273)
Q Consensus 175 ~~~~-~~~~~g~~~D~~h~~~~~~~~~------~~i~~~~~~i~~vHi~d~~~~~~~ 224 (273)
+.- +..++-.|.+++.-...|-+.. +++++++=++..+=-.|...|++.
T Consensus 131 -~~~~~~~~i~a~HNfYPr~~TGLs~~~f~~~n~~~k~~gi~~~AFI~g~~~~rGPl 186 (357)
T PF05913_consen 131 -KYGANFSNIIACHNFYPRPYTGLSEEFFIEKNQLLKEYGIKTAAFIPGDENKRGPL 186 (357)
T ss_dssp -CTT--GGGEEEE---B-STT-SB-HHHHHHHHHHHHHTT-EEEEEE--SSS-BTTT
T ss_pred -HhcCCHHHeEEEecccCCCCCCCCHHHHHHHHHHHHHCCCcEEEEecCCCcccCCc
Confidence 322 2356888888887766676644 445556655555555554334443
No 157
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=86.80 E-value=10 Score=32.47 Aligned_cols=108 Identities=12% Similarity=0.047 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCCeEEecCCCC-CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCC
Q psy13372 24 LDKYRVAAELGFRYIESWFPPV-GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNI 102 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~ 102 (273)
.+-++.+.+.|.+.|-+..+.. -....+..+.++++|+.+..-.... ...+ .+.+.+.++.+.++|+
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a-----~~~~-------~~~~~~~~~~~~~~g~ 152 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAI-----SGYS-------DEELLELLELVNEIKP 152 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEee-----cCCC-------HHHHHHHHHHHHhCCC
Confidence 4567777889999988876532 1224556677788999876322111 1111 3567778888888999
Q ss_pred CeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 103 PAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 103 ~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
..+.+.-. .+.. .+.....+++.+++ ... .++.+.++.|+.
T Consensus 153 ~~i~l~DT-~G~~------~P~~v~~lv~~l~~---~~~-~~~~i~~H~Hn~ 193 (266)
T cd07944 153 DVFYIVDS-FGSM------YPEDIKRIISLLRS---NLD-KDIKLGFHAHNN 193 (266)
T ss_pred CEEEEecC-CCCC------CHHHHHHHHHHHHH---hcC-CCceEEEEeCCC
Confidence 99988521 1111 33444455554443 111 148888888654
No 158
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=86.64 E-value=16 Score=29.67 Aligned_cols=189 Identities=12% Similarity=0.082 Sum_probs=101.5
Q ss_pred CHHHHHHHHH--HcCCCeEEecCCC-CCCCHHHHHHHHHHcC-CeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAA--ELGFRYIESWFPP-VGVTLEQLVAAQTRHG-LKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYA 97 (273)
Q Consensus 22 ~~~~~l~~~~--~~G~~~vEl~~~~-~~~~~~~~~~~l~~~g-L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 97 (273)
++++.+..+. +-|++.||+..+. .....+.++++.+.++ ..+.. ... . . +++. ..++.+
T Consensus 10 ~~~~a~~~~~~l~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~-d~k----~-~--d~~~---------~~~~~~ 72 (206)
T TIGR03128 10 DIEEALELAEKVADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLA-DLK----T-M--DAGE---------YEAEQA 72 (206)
T ss_pred CHHHHHHHHHHcccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEE-EEe----e-c--cchH---------HHHHHH
Confidence 4555555444 4578899996442 1134666777666653 33332 111 0 1 2221 146778
Q ss_pred HHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhh
Q psy13372 98 CALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRA 177 (273)
Q Consensus 98 ~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~ 177 (273)
...|+..|.+|.... . ..+.++.+.++++|+.+.++-.++ ....+++.... +
T Consensus 73 ~~~Gad~i~vh~~~~----------~-------~~~~~~i~~~~~~g~~~~~~~~~~-------~t~~~~~~~~~---~- 124 (206)
T TIGR03128 73 FAAGADIVTVLGVAD----------D-------ATIKGAVKAAKKHGKEVQVDLINV-------KDKVKRAKELK---E- 124 (206)
T ss_pred HHcCCCEEEEeccCC----------H-------HHHHHHHHHHHHcCCEEEEEecCC-------CChHHHHHHHH---H-
Confidence 899999999985311 0 245677788999999999885332 12334544455 3
Q ss_pred cCCCceeEeeecccc-cccCCChHHHHHhcCCcceeEEeccCCCCCCCCCCCcccHHHHHHHHHHcCCCceEEEe-eecC
Q psy13372 178 HGISNVQLQFDFFNA-QRICGDLTHTFGACRDLIGHVQIAQAPDRQEPHARGEIDYAYVFELLAREGYEGYVGLE-YKPQ 255 (273)
Q Consensus 178 ~~~~~~g~~~D~~h~-~~~~~~~~~~i~~~~~~i~~vHi~d~~~~~~~g~~G~id~~~i~~~L~~~gy~g~~~lE-~~~~ 255 (273)
.+...+++. .+.- +..+....+.++.+...+..+.+. -. |-++...+- .+.+.|.++.++-. +...
T Consensus 125 ~g~d~v~~~--pg~~~~~~~~~~~~~i~~l~~~~~~~~i~--------v~-GGI~~~n~~-~~~~~Ga~~v~vGsai~~~ 192 (206)
T TIGR03128 125 LGADYIGVH--TGLDEQAKGQNPFEDLQTILKLVKEARVA--------VA-GGINLDTIP-DVIKLGPDIVIVGGAITKA 192 (206)
T ss_pred cCCCEEEEc--CCcCcccCCCCCHHHHHHHHHhcCCCcEE--------EE-CCcCHHHHH-HHHHcCCCEEEEeehhcCC
Confidence 344556552 2211 111122233344443333222222 02 556666654 45578998776544 4555
Q ss_pred CChHHHHHHHHHh
Q psy13372 256 GNTKEGLEEFLKT 268 (273)
Q Consensus 256 ~~~~~~~~~~~~~ 268 (273)
.++.+.++ -+++
T Consensus 193 ~d~~~~~~-~l~~ 204 (206)
T TIGR03128 193 ADPAEAAR-QIRK 204 (206)
T ss_pred CCHHHHHH-HHHh
Confidence 67777777 5554
No 159
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=86.62 E-value=21 Score=31.11 Aligned_cols=123 Identities=14% Similarity=0.012 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCC---CC----HHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVG---VT----LEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTI 94 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~---~~----~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (273)
.+.+.+++.-+.|.++|=+.+.-++ .+ .+-+....+..+-++..+..- |.++ .+...+..
T Consensus 26 a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~-----g~~~--------t~eai~la 92 (299)
T COG0329 26 ALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGV-----GSNS--------TAEAIELA 92 (299)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEec-----CCCc--------HHHHHHHH
Confidence 4677888999999999999875221 12 233344555565554333211 1111 23455677
Q ss_pred HHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHH
Q psy13372 95 QYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLI 172 (273)
Q Consensus 95 ~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li 172 (273)
+.|+++|+..+.+.+...... ..+.+.++++.+++.+ ++.+.|-|.+.. ...--+++...++.
T Consensus 93 k~a~~~Gad~il~v~PyY~k~---------~~~gl~~hf~~ia~a~---~lPvilYN~P~~---tg~~l~~e~i~~la 155 (299)
T COG0329 93 KHAEKLGADGILVVPPYYNKP---------SQEGLYAHFKAIAEAV---DLPVILYNIPSR---TGVDLSPETIARLA 155 (299)
T ss_pred HHHHhcCCCEEEEeCCCCcCC---------ChHHHHHHHHHHHHhc---CCCEEEEeCccc---cCCCCCHHHHHHHh
Confidence 888999999887654333221 1445666676666655 677888887643 22344566666666
No 160
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=86.59 E-value=20 Score=30.95 Aligned_cols=83 Identities=5% Similarity=-0.053 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHHHHHHhhCCcEEEEcc--CCCCCC----CCcccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCC
Q psy13372 124 DPYTTLKENLIYACAELERHSLTALIEP--VNQHSV----PGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICG 197 (273)
Q Consensus 124 ~~~~~~~~~l~~l~~~a~~~gv~i~lE~--~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~ 197 (273)
..++.-++..++++++|+++|+.+-.|. +..... ...+.++++++.+++ ++.+-..+.+.+-+.|-.+.+.
T Consensus 108 l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv---~~TgvD~LAvaiGt~HG~Y~~p 184 (283)
T PRK07998 108 LPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFV---ERTGCDMLAVSIGNVHGLEDIP 184 (283)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHH---HHhCcCeeehhccccccCCCCC
Confidence 4577788889999999999999876664 211100 023468999999999 9998888999999989877543
Q ss_pred Ch-HHHHHhcCCc
Q psy13372 198 DL-THTFGACRDL 209 (273)
Q Consensus 198 ~~-~~~i~~~~~~ 209 (273)
.+ .+.++++...
T Consensus 185 ~l~~~~l~~I~~~ 197 (283)
T PRK07998 185 RIDIPLLKRIAEV 197 (283)
T ss_pred CcCHHHHHHHHhh
Confidence 32 3455555443
No 161
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=86.40 E-value=8.2 Score=33.42 Aligned_cols=112 Identities=11% Similarity=0.086 Sum_probs=63.4
Q ss_pred HHHHHHHHHcCCCeEEecCCCC--------CCC-------HHHHHHHHHHcCCeeEE-EecCCccccCCCCCchhHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFPPV--------GVT-------LEQLVAAQTRHGLKQVL-INTEVDENFGYAAVKGKESEFR 87 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~--------~~~-------~~~~~~~l~~~gL~i~~-~~~~~~~~~~~~~~~~~~~~~~ 87 (273)
.+-++.+.+.|.+.|.+..+-. ..+ ..+..+..+++|+.+.. +....+. ++... ...
T Consensus 82 ~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~-----~~~~~--~~~ 154 (287)
T PRK05692 82 LKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGC-----PYEGE--VPP 154 (287)
T ss_pred HHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecC-----CCCCC--CCH
Confidence 3345778889999999886521 111 34556667899998752 2211110 00000 124
Q ss_pred HHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 88 ASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 88 ~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
+.+.+.++.+..+|+..|.+.-. .+.. .+.....+++.+++ ... ++.+.++.|+.
T Consensus 155 ~~~~~~~~~~~~~G~d~i~l~DT-~G~~------~P~~v~~lv~~l~~---~~~--~~~i~~H~Hn~ 209 (287)
T PRK05692 155 EAVADVAERLFALGCYEISLGDT-IGVG------TPGQVRAVLEAVLA---EFP--AERLAGHFHDT 209 (287)
T ss_pred HHHHHHHHHHHHcCCcEEEeccc-cCcc------CHHHHHHHHHHHHH---hCC--CCeEEEEecCC
Confidence 67888888889999999988521 1111 33344444444443 211 37888887653
No 162
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=86.39 E-value=4.5 Score=33.59 Aligned_cols=116 Identities=10% Similarity=0.070 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCCCC-CCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcc
Q psy13372 83 ESEFRASLEKTIQYACALNIPAIHIMSGKT-ESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYY 161 (273)
Q Consensus 83 ~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~ 161 (273)
.....+.++..++.|..+|++.+++..-.. +..++ +......++-+.+.+.+.++...+.||++-+=- . -..+
T Consensus 26 H~~G~~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R~-~~EV~~Lm~l~~~~l~~~~~~~~~~~i~vr~iG--d---~~~L 99 (221)
T cd00475 26 HKAGAEKLRDILRWCLELGVKEVTLYAFSTENWKRP-KEEVDFLMELFRDVLRRILKELEKLGVRIRIIG--D---LSLL 99 (221)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeechhhhCcC-HHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEe--C---hhhC
Confidence 345578899999999999999999975433 22221 001223345566677777777888898877532 1 1122
Q ss_pred cCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhcC
Q psy13372 162 LSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACR 207 (273)
Q Consensus 162 ~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~ 207 (273)
+++..+.++++++....+=++++.++-.+-...++.++++++.
T Consensus 100 ---p~~~~~~~~~~e~~T~~~~~~~lni~~~Y~gr~eI~~a~~~~~ 142 (221)
T cd00475 100 ---PESLQKEIKKAEEATKNNTGFTLNVAFNYGGRQEIIHAVREIA 142 (221)
T ss_pred ---CHHHHHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 3344455533355544555666666554433344666666553
No 163
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=86.24 E-value=4.4 Score=35.41 Aligned_cols=56 Identities=7% Similarity=-0.004 Sum_probs=43.2
Q ss_pred HHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 93 TIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 93 ~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
..+..+++|+..+.+.....+.+ +++.-++-...++++.+.+++.++.+.||++..
T Consensus 110 S~~rike~GadavK~Llyy~pD~------~~~in~~k~a~vervg~eC~a~dipf~lE~ltY 165 (324)
T PRK12399 110 SAKRIKEEGADAVKFLLYYDVDE------PDEINEQKKAYIERIGSECVAEDIPFFLEILTY 165 (324)
T ss_pred hHHHHHHhCCCeEEEEEEECCCC------CHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeec
Confidence 34555889999998876555333 445556777889999999999999999999764
No 164
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=86.02 E-value=20 Score=30.87 Aligned_cols=110 Identities=10% Similarity=0.038 Sum_probs=64.0
Q ss_pred HHHHHHHHHcCCCeEEecCCCC--------CCC-------HHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFPPV--------GVT-------LEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRA 88 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~--------~~~-------~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (273)
..-++.+.+.|.+.|.+..+-. ..+ ..++.+..+++|+.+.......+ .. +..+ .+
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~-~~-~r~~-------~~ 147 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWS-NG-MRDS-------PD 147 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCC-CC-CcCC-------HH
Confidence 4568888999999999986421 122 23446677889998764322111 00 0111 35
Q ss_pred HHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 89 SLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 89 ~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
++.+.++.+..+|+..|.+.-. .+.. .+.....+++.+++ .. -++.+.++.|+.
T Consensus 148 ~~~~~~~~~~~~G~~~i~l~DT-~G~~------~P~~v~~l~~~l~~---~~--~~~~i~~H~Hnd 201 (280)
T cd07945 148 YVFQLVDFLSDLPIKRIMLPDT-LGIL------SPFETYTYISDMVK---RY--PNLHFDFHAHND 201 (280)
T ss_pred HHHHHHHHHHHcCCCEEEecCC-CCCC------CHHHHHHHHHHHHh---hC--CCCeEEEEeCCC
Confidence 7778888888999999988521 1111 23334444444432 11 147888887653
No 165
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=85.99 E-value=17 Score=29.55 Aligned_cols=114 Identities=17% Similarity=0.107 Sum_probs=66.9
Q ss_pred HHHHHHHHHcCCCeEEecCCCC---CC----CHHHHHHHHHHc-CCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFPPV---GV----TLEQLVAAQTRH-GLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQ 95 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~---~~----~~~~~~~~l~~~-gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (273)
...++.+.++|.|.|++..+.+ .. -.+++.+..+.. |+.+-.+.- .+. .. .+.+.++++
T Consensus 72 ~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e-----~~~--l~------~~~i~~a~r 138 (203)
T cd00959 72 VAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILE-----TGL--LT------DEEIIKACE 138 (203)
T ss_pred HHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEe-----cCC--CC------HHHHHHHHH
Confidence 3446778889999999997632 11 234555555543 444433211 111 11 257889999
Q ss_pred HHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHH
Q psy13372 96 YACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLI 172 (273)
Q Consensus 96 ~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li 172 (273)
.|.++|+.+|.+.+|..+... +.. -++.+++.+. .+.+|+++ .+ +.|.+++++++
T Consensus 139 ia~e~GaD~IKTsTG~~~~~a-----t~~----~v~~~~~~~~--~~v~ik~a---------GG--ikt~~~~l~~~ 193 (203)
T cd00959 139 IAIEAGADFIKTSTGFGPGGA-----TVE----DVKLMKEAVG--GRVGVKAA---------GG--IRTLEDALAMI 193 (203)
T ss_pred HHHHhCCCEEEcCCCCCCCCC-----CHH----HHHHHHHHhC--CCceEEEe---------CC--CCCHHHHHHHH
Confidence 999999999999888753331 111 2333444333 23344444 12 44889999998
No 166
>PLN02591 tryptophan synthase
Probab=85.98 E-value=13 Score=31.52 Aligned_cols=46 Identities=22% Similarity=0.214 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHcCCCeEEec-CCCCCCCHHHHHHHHHHcCCeeEEEecC
Q psy13372 22 NYLDKYRVAAELGFRYIESW-FPPVGVTLEQLVAAQTRHGLKQVLINTE 69 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~-~~~~~~~~~~~~~~l~~~gL~i~~~~~~ 69 (273)
.+++.++.++++|.+||=+. .|+ .....+.+.++++||..+.+..+
T Consensus 94 G~~~F~~~~~~aGv~GviipDLP~--ee~~~~~~~~~~~gl~~I~lv~P 140 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVPDLPL--EETEALRAEAAKNGIELVLLTTP 140 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCH--HHHHHHHHHHHHcCCeEEEEeCC
Confidence 78999999999999999876 233 34678899999999999987644
No 167
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=85.95 E-value=5.9 Score=33.08 Aligned_cols=112 Identities=7% Similarity=0.026 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCCCC-CCCCCCCCCCcch----HHHHHHHHHHHHHHHhhCCcEEEEccCCCCCC
Q psy13372 83 ESEFRASLEKTIQYACALNIPAIHIMSGKT-ESSRTQPIASEDP----YTTLKENLIYACAELERHSLTALIEPVNQHSV 157 (273)
Q Consensus 83 ~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~~~~~~~~~~~----~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~ 157 (273)
.....+.+++.++.|..+|++.+++..-.. ++.+ +++. ++-+.+.|.+..+...+.||++-+=- .
T Consensus 32 H~~G~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~R-----p~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iG--d--- 101 (230)
T PRK14837 32 HKEGLKRAKEIVKHSLKLGIKYLSLYVFSTENWNR-----TDSEIEHLMFLIADYLSSEFNFYKKNNIKIIVSG--D--- 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCC-----CHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEc--C---
Confidence 345678899999999999999999975433 2222 2333 33444555566666778899876532 1
Q ss_pred CCcccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhcC
Q psy13372 158 PGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACR 207 (273)
Q Consensus 158 ~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~ 207 (273)
...+ +++..+.+++.++....+=|+++.++-.+-...++.++++++.
T Consensus 102 ~~~L---p~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~~~~~ 148 (230)
T PRK14837 102 IESL---SEEVKKSIKDAISFTKNFDGLVLNLAINYGGRNEIVRAVKKFL 148 (230)
T ss_pred hhhC---CHHHHHHHHHHHHHhcCCCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 1122 3445555544355444555566655544433335666666553
No 168
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=85.88 E-value=3.4 Score=34.50 Aligned_cols=127 Identities=16% Similarity=0.087 Sum_probs=75.3
Q ss_pred HHHHHHHHHcCCCeEEecCCC---C-------CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFPP---V-------GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKT 93 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~---~-------~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (273)
...++.+.++|.+.|.+..++ . ...+.++.+..+++||.+..-..+.+.. . .++. ..+.+..+
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~--~-~~~~----~~~~I~~a 151 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEE--V-ADEK----KPDLIARA 151 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHH--B-SSTT----HHHHHHHH
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchh--h-cccc----cHHHHHHH
Confidence 456788899999999999764 1 1235677778888898887653221111 1 1111 34678899
Q ss_pred HHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHH---hhCCcEEEEccCCCCCCCCcccCCHHHHHH
Q psy13372 94 IQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAEL---ERHSLTALIEPVNQHSVPGYYLSSFRVAER 170 (273)
Q Consensus 94 i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a---~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~ 170 (273)
+++|..+|+..|.+.+|.. .. .-..-++.+++++.-+ .+.||.+. +.. ....|..+.+++.+
T Consensus 152 ~ria~e~GaD~vKt~tg~~-~~---------~t~~~~~~~~~~~~~~~~p~~~~Vk~s----GGi-~~~~~~~~l~~a~~ 216 (236)
T PF01791_consen 152 ARIAAELGADFVKTSTGKP-VG---------ATPEDVELMRKAVEAAPVPGKVGVKAS----GGI-DAEDFLRTLEDALE 216 (236)
T ss_dssp HHHHHHTT-SEEEEE-SSS-SC---------SHHHHHHHHHHHHHTHSSTTTSEEEEE----SSS-SHHHHHHSHHHHHH
T ss_pred HHHHHHhCCCEEEecCCcc-cc---------ccHHHHHHHHHHHHhcCCCcceEEEEe----CCC-ChHHHHHHHHHHHH
Confidence 9999999999999988744 22 1123345566655543 23345554 110 01234567777777
Q ss_pred HH
Q psy13372 171 LI 172 (273)
Q Consensus 171 li 172 (273)
++
T Consensus 217 ~i 218 (236)
T PF01791_consen 217 FI 218 (236)
T ss_dssp HH
T ss_pred HH
Confidence 77
No 169
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=85.84 E-value=13 Score=34.53 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=74.2
Q ss_pred cccccccccccccC-HHHHHHHHHHcCCCeEEecCCC-CCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHH
Q psy13372 9 AANLTLLFNDLAAN-YLDKYRVAAELGFRYIESWFPP-VGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEF 86 (273)
Q Consensus 9 ~~~~~~~~~~~~~~-~~~~l~~~~~~G~~~vEl~~~~-~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~ 86 (273)
|.|. ..+.+++.+ .+..++.+++.|.|-+-+.-.. +....+...+.+++.|..+...-++. .+| ...
T Consensus 93 G~n~-vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt-------~sp---~~t 161 (468)
T PRK12581 93 GQNL-LGYRHYADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYT-------TSP---VHT 161 (468)
T ss_pred cccc-cCccCCcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEE-------eCC---cCc
Confidence 5554 444454334 4455888899999998887442 22334666678899998765221111 112 124
Q ss_pred HHHHHHHHHHHHHcCCCeEEec--CCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 87 RASLEKTIQYACALNIPAIHIM--SGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 87 ~~~~~~~i~~a~~lG~~~i~~~--~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
++++.+.++.+..+|+..|.+. .|.. .+.....+++.+++ ..++.|.++.|+.
T Consensus 162 ~~y~~~~a~~l~~~Gad~I~IkDtaG~l---------~P~~v~~Lv~alk~------~~~~pi~~H~Hnt 216 (468)
T PRK12581 162 LNYYLSLVKELVEMGADSICIKDMAGIL---------TPKAAKELVSGIKA------MTNLPLIVHTHAT 216 (468)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCc---------CHHHHHHHHHHHHh------ccCCeEEEEeCCC
Confidence 6788888888899999999884 2322 34445555555543 2368888888654
No 170
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=85.72 E-value=8.9 Score=31.15 Aligned_cols=70 Identities=19% Similarity=0.242 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHcCCCeEEecC-CCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCH
Q psy13372 87 RASLEKTIQYACALNIPAIHIMS-GKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSF 165 (273)
Q Consensus 87 ~~~~~~~i~~a~~lG~~~i~~~~-G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~ 165 (273)
+-....++++.+.+|+..+.++| |+. ...+-++.+++.+.++|+.+ ||.+. --+.+.
T Consensus 134 ~V~vetAiaml~dmG~~SiKffPm~Gl---------------~~leE~~avAkA~a~~g~~l--EPTGG-----Idl~N~ 191 (218)
T PF07071_consen 134 IVPVETAIAMLKDMGGSSIKFFPMGGL---------------KHLEELKAVAKACARNGFTL--EPTGG-----IDLDNF 191 (218)
T ss_dssp EEEHHHHHHHHHHTT--EEEE---TTT---------------TTHHHHHHHHHHHHHCT-EE--EEBSS-------TTTH
T ss_pred cccHHHHHHHHHHcCCCeeeEeecCCc---------------ccHHHHHHHHHHHHHcCcee--CCcCC-----cCHHHH
Confidence 34567899999999999999875 222 12455788889999999999 99764 347788
Q ss_pred HHHHHHHHHHhhcCCC
Q psy13372 166 RVAERLIRELRAHGIS 181 (273)
Q Consensus 166 ~~~~~li~~~~~~~~~ 181 (273)
++..+++ -+.+-+
T Consensus 192 ~~I~~i~---l~aGv~ 204 (218)
T PF07071_consen 192 EEIVKIC---LDAGVE 204 (218)
T ss_dssp HHHHHHH---HHTT-S
T ss_pred HHHHHHH---HHcCCC
Confidence 8888888 665433
No 171
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=85.68 E-value=5.9 Score=32.96 Aligned_cols=114 Identities=11% Similarity=0.087 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEecCCCC-CCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCccc
Q psy13372 84 SEFRASLEKTIQYACALNIPAIHIMSGKT-ESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYL 162 (273)
Q Consensus 84 ~~~~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~ 162 (273)
....+.+++.++.|..+|++.+++.+-.. ++.++ +......++-+.+.|.+..+...+.||++-+=- . .-
T Consensus 26 ~~G~~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp-~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iG--d------~~ 96 (226)
T TIGR00055 26 KAGVKSLRRILRWCANLGVECLTLYAFSTENWKRP-KEEVDFLMELFEKKLDREVKELHRYNVRIRIIG--D------LS 96 (226)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCcC-HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEe--C------hh
Confidence 34567899999999999999999976443 22221 000122234455556666666778899876532 1 11
Q ss_pred CCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhc
Q psy13372 163 SSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGAC 206 (273)
Q Consensus 163 ~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~ 206 (273)
.-+++..+.+++.++....+=++++.++-.+-...++.++++.+
T Consensus 97 ~Lp~~~~~~i~~~e~~T~~n~~~~lnia~~Yggr~EI~~A~~~~ 140 (226)
T TIGR00055 97 LLSKELQEKIKKAEEDTKNNTDFTLNIAFNYGGRNEILHAVKQI 140 (226)
T ss_pred hCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHH
Confidence 22344555553335554455566666544433333455555554
No 172
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=85.60 E-value=9.3 Score=32.22 Aligned_cols=109 Identities=11% Similarity=0.010 Sum_probs=66.0
Q ss_pred HHHHHHHHHcCCCeEEecCCCC---------------CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFPPV---------------GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRA 88 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~---------------~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (273)
.+.++.+++.|++.|.+..+-. ........+.++++|+++........ .+ ....+
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~-----~~-----~~~~~ 146 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAF-----GC-----KTDPE 146 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeec-----CC-----CCCHH
Confidence 6778999999999998886421 01134455667899998775332211 00 01135
Q ss_pred HHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 89 SLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 89 ~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
.+...++.+.++|+..+.+... .+.. .+..+..+++.++ +.... +.+.++.|+.
T Consensus 147 ~l~~~~~~~~~~g~~~i~l~Dt-~G~~------~P~~v~~li~~l~---~~~~~--~~~~~H~Hn~ 200 (265)
T cd03174 147 YVLEVAKALEEAGADEISLKDT-VGLA------TPEEVAELVKALR---EALPD--VPLGLHTHNT 200 (265)
T ss_pred HHHHHHHHHHHcCCCEEEechh-cCCc------CHHHHHHHHHHHH---HhCCC--CeEEEEeCCC
Confidence 6778888899999999987521 1111 3344445444444 33332 7888888654
No 173
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=85.58 E-value=11 Score=31.25 Aligned_cols=188 Identities=9% Similarity=0.032 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHcCCCeEEecCC---CC---CCCHHHHHHHHHH-cCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFP---PV---GVTLEQLVAAQTR-HGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTI 94 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~---~~---~~~~~~~~~~l~~-~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (273)
.+.+.++.+.+.|++.+.+..- +- ...++.++++.+. ..+.+..+-+- .+|+ +.+
T Consensus 17 ~l~~~i~~l~~~g~d~lHiDimDG~FVPN~tfg~~~i~~lr~~~~~~~~dvHLMv--------~~P~----------~~i 78 (223)
T PRK08745 17 RLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMV--------EPVD----------RIV 78 (223)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCccCCCcccCHHHHHHHHhhCCCCCEEEEecc--------CCHH----------HHH
Confidence 7899999999999999988842 11 1334555554443 35665544321 2232 245
Q ss_pred HHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHH
Q psy13372 95 QYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRE 174 (273)
Q Consensus 95 ~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~ 174 (273)
+.....|+..|.+|.= .. ..+.+.++..+++|++.++=- + |. +..+....++
T Consensus 79 ~~~~~~gad~I~~H~E---a~---------------~~~~~~l~~Ir~~g~k~Glal-n----P~---T~~~~i~~~l-- 130 (223)
T PRK08745 79 PDFADAGATTISFHPE---AS---------------RHVHRTIQLIKSHGCQAGLVL-N----PA---TPVDILDWVL-- 130 (223)
T ss_pred HHHHHhCCCEEEEccc---Cc---------------ccHHHHHHHHHHCCCceeEEe-C----CC---CCHHHHHHHH--
Confidence 5556679999999852 11 124455566677777755442 1 22 2455556667
Q ss_pred HhhcCCCceeEeeeccccccc-CCChHHHHHhcCCcce----eEEeccCCCCCCCCCCCcccHHHHHHHHHHcCCCceEE
Q psy13372 175 LRAHGISNVQLQFDFFNAQRI-CGDLTHTFGACRDLIG----HVQIAQAPDRQEPHARGEIDYAYVFELLAREGYEGYVG 249 (273)
Q Consensus 175 ~~~~~~~~~g~~~D~~h~~~~-~~~~~~~i~~~~~~i~----~vHi~d~~~~~~~g~~G~id~~~i~~~L~~~gy~g~~~ 249 (273)
+.++ --+-++.+.|..-.. -.+..+-++++...+. .+.+. =+ |-++...+ +.+.+.|-+..++
T Consensus 131 -~~vD-~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~Ie--------VD-GGI~~eti-~~l~~aGaDi~V~ 198 (223)
T PRK08745 131 -PELD-LVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLE--------ID-GGVKADNI-GAIAAAGADTFVA 198 (223)
T ss_pred -hhcC-EEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEE--------EE-CCCCHHHH-HHHHHcCCCEEEE
Confidence 5553 125555665544110 0112222333222211 12222 12 88886644 5777788764322
Q ss_pred E-eeecCCChHHHHHHHHHh
Q psy13372 250 L-EYKPQGNTKEGLEEFLKT 268 (273)
Q Consensus 250 l-E~~~~~~~~~~~~~~~~~ 268 (273)
= =++...+..+.++ -+|+
T Consensus 199 GSaiF~~~d~~~~~~-~lr~ 217 (223)
T PRK08745 199 GSAIFNAPDYAQVIA-QMRA 217 (223)
T ss_pred ChhhhCCCCHHHHHH-HHHH
Confidence 1 1334556777777 5554
No 174
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=85.56 E-value=8.3 Score=33.61 Aligned_cols=74 Identities=9% Similarity=0.028 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHcCCCeEEecCCC-CCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCH
Q psy13372 87 RASLEKTIQYACALNIPAIHIMSGK-TESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSF 165 (273)
Q Consensus 87 ~~~~~~~i~~a~~lG~~~i~~~~G~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~ 165 (273)
++.+++.|+..+.+|.+.+.+|.-. ++.... |.-....-....+-++++.++|+++||++..| +.++
T Consensus 16 ~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~-p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPe-----------id~p 83 (301)
T cd06565 16 VSYLKKLLRLLALLGANGLLLYYEDTFPYEGE-PEVGRMRGAYTKEEIREIDDYAAELGIEVIPL-----------IQTL 83 (301)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEecceecCCC-cccccCCCCcCHHHHHHHHHHHHHcCCEEEec-----------CCCH
Confidence 6789999999999999999887532 111100 10000011245678999999999999999977 4456
Q ss_pred HHHHHHH
Q psy13372 166 RVAERLI 172 (273)
Q Consensus 166 ~~~~~li 172 (273)
.++..++
T Consensus 84 GH~~~~l 90 (301)
T cd06565 84 GHLEFIL 90 (301)
T ss_pred HHHHHHH
Confidence 6666666
No 175
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=85.55 E-value=6 Score=33.27 Aligned_cols=114 Identities=11% Similarity=0.038 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEecCCCC-CCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCccc
Q psy13372 84 SEFRASLEKTIQYACALNIPAIHIMSGKT-ESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYL 162 (273)
Q Consensus 84 ~~~~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~ 162 (273)
....+.+...++.|..+|++++++..-.. +..++ +......++-+.+.+++..+...+.||++-+= +. ...+
T Consensus 35 ~~G~~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~-~~EV~~Lm~L~~~~l~~~~~~~~~~~irv~~i--G~---~~~L- 107 (241)
T PRK14842 35 REGANAIDRLMDASLEYGLKNISLYAFSTENWKRP-ITEIRSIFGLLVEFIETRLDTIHARGIRIHHS--GS---RKKL- 107 (241)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE--eC---hhhC-
Confidence 44567899999999999999999975433 22221 00122334455666777777778889987642 11 1122
Q ss_pred CCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhc
Q psy13372 163 SSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGAC 206 (273)
Q Consensus 163 ~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~ 206 (273)
++...+.++++++....+=++++.++-.+-...++..+++.+
T Consensus 108 --p~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~ 149 (241)
T PRK14842 108 --TRTVLDKIDFAMAKTKKNKNLTVNFCLNYGSHDELLRAAQEV 149 (241)
T ss_pred --CHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHH
Confidence 334445453335544455566666655443334566666554
No 176
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=85.48 E-value=7.5 Score=32.85 Aligned_cols=138 Identities=15% Similarity=0.064 Sum_probs=79.4
Q ss_pred cCHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeE-EEecCCccccCCCCCchhHHHHHHHHHHHHHHHHH
Q psy13372 21 ANYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQV-LINTEVDENFGYAAVKGKESEFRASLEKTIQYACA 99 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 99 (273)
.+..+.++.+.+.|+..+=...... .+...+.+..++++..+. +++.... ... ...+...+.+... ..
T Consensus 14 ~~~~~~~~~~~~~g~~~~i~~~~~~-~~~~~~~~~~~~~~~~v~~~~GiHP~----~~~--~~~~~~~~~l~~l----~~ 82 (255)
T PF01026_consen 14 EDRPEVLERAREAGVSAIIIVSTDP-EDWERVLELASQYPDRVYPALGIHPW----EAH--EVNEEDLEELEEL----IN 82 (255)
T ss_dssp TTHHHHHHHHHHTTEEEEEEEESSH-HHHHHHHHHHHHTTTEEEEEE---GG----GGG--GHSHHHHHHHHHH----HH
T ss_pred cCHHHHHHHHHHcCCCEEEEcCCCH-HHhHHHHHHHhcCCCeEEEEecCCcc----hhh--hhhHHHHHHHHHH----HH
Confidence 3678999999999998883322211 344577777788888554 4544321 111 1112222333333 22
Q ss_pred cCCC-eEEe-cCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhh
Q psy13372 100 LNIP-AIHI-MSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRA 177 (273)
Q Consensus 100 lG~~-~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~ 177 (273)
+.-. .+.+ -.|-.-.. . ....++...+.+++.+++|++++..+.|+... ..+++++++ ++
T Consensus 83 ~~~~~~~aIGEiGLD~~~-~----~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~----------a~~~~l~il---~~ 144 (255)
T PF01026_consen 83 LNRPKVVAIGEIGLDYYW-R----NEEDKEVQEEVFERQLELAKELNLPVSIHCRK----------AHEELLEIL---KE 144 (255)
T ss_dssp HTSTTEEEEEEEEEETTT-T----SSSGHHHHHHHHHHHHHHHHHHTCEEEEEEES----------HHHHHHHHH---HH
T ss_pred hccccceeeeeeccCccc-c----cCCcHHHHHHHHHHHHHHHHHhCCcEEEecCC----------cHHHHHHHH---Hh
Confidence 2222 3222 12221111 1 34567788889999999999999999999732 456788888 88
Q ss_pred cCCCceeEee
Q psy13372 178 HGISNVQLQF 187 (273)
Q Consensus 178 ~~~~~~g~~~ 187 (273)
.+.++.++++
T Consensus 145 ~~~~~~~~i~ 154 (255)
T PF01026_consen 145 YGPPNLRVIF 154 (255)
T ss_dssp TTGGTSEEEE
T ss_pred ccccceeEEE
Confidence 7755554443
No 177
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=85.44 E-value=26 Score=31.22 Aligned_cols=25 Identities=8% Similarity=-0.032 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHcCCCeEEecCCCC
Q psy13372 88 ASLEKTIQYACALNIPAIHIMSGKT 112 (273)
Q Consensus 88 ~~~~~~i~~a~~lG~~~i~~~~G~~ 112 (273)
+.....++...+.|+.++.+..|..
T Consensus 235 ee~~~i~~~L~~~GvD~I~Vs~g~~ 259 (353)
T cd04735 235 EDTLALVDKLADKGLDYLHISLWDF 259 (353)
T ss_pred HHHHHHHHHHHHcCCCEEEeccCcc
Confidence 3445677777888999999987654
No 178
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=85.35 E-value=14 Score=30.84 Aligned_cols=129 Identities=13% Similarity=0.134 Sum_probs=85.5
Q ss_pred cCHHHHHHHHHHcCCCeEEecCCCC-----CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHH
Q psy13372 21 ANYLDKYRVAAELGFRYIESWFPPV-----GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQ 95 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~~~~-----~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (273)
+++.+....+.+.|.++|.++...| +.++..+++.++ .+ ++. + .++ ....++
T Consensus 21 Pdpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~---~~---lNl----E--~a~-----------t~em~~ 77 (234)
T cd00003 21 PDPVEAALLAEKAGADGITVHLREDRRHIQDRDVRLLRELVR---TE---LNL----E--MAP-----------TEEMLE 77 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcC---CC---EEe----c--cCC-----------CHHHHH
Confidence 5889999999999999999997543 234555555553 11 221 1 112 225788
Q ss_pred HHHHcCCCeEEecCCCCCCCCCCCCCCcchHHH--HHHHHHHHHHHHhhCCcEE--EEccCCCCCCCCcccCCHHHHHHH
Q psy13372 96 YACALNIPAIHIMSGKTESSRTQPIASEDPYTT--LKENLIYACAELERHSLTA--LIEPVNQHSVPGYYLSSFRVAERL 171 (273)
Q Consensus 96 ~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~--~~~~l~~l~~~a~~~gv~i--~lE~~~~~~~~~~~~~~~~~~~~l 171 (273)
+|.++....+.+.|=.+..- +++..|+- ..+.|++++...++.||++ .++| + .+.++.
T Consensus 78 ia~~~kP~~vtLVPEkr~E~-----TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP------------d-~~qi~~ 139 (234)
T cd00003 78 IALEVKPHQVTLVPEKREEL-----TTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDP------------D-PEQIEA 139 (234)
T ss_pred HHHHCCCCEEEECCCCCCCc-----cCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCC------------C-HHHHHH
Confidence 89999999999977544221 25555554 5688999999999999874 4454 1 234666
Q ss_pred HHHHhhcCCCceeEeeeccccccc
Q psy13372 172 IRELRAHGISNVQLQFDFFNAQRI 195 (273)
Q Consensus 172 i~~~~~~~~~~~g~~~D~~h~~~~ 195 (273)
. .+++.+ .+-+.||++...
T Consensus 140 A---~~~GAd--~VELhTG~Ya~a 158 (234)
T cd00003 140 A---KEVGAD--RVELHTGPYANA 158 (234)
T ss_pred H---HHhCcC--EEEEechhhhcC
Confidence 6 777655 566677776543
No 179
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=85.34 E-value=12 Score=31.75 Aligned_cols=82 Identities=13% Similarity=0.088 Sum_probs=56.0
Q ss_pred HHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCc---EEEEccCCCCCCCCcccCCHHH
Q psy13372 91 EKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSL---TALIEPVNQHSVPGYYLSSFRV 167 (273)
Q Consensus 91 ~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv---~i~lE~~~~~~~~~~~~~~~~~ 167 (273)
.+.++.+++.|+..|.+|..+.+.....-..++...+...+.+.+..+.|.++|| +|.+-|.- .|..+.++
T Consensus 110 ~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~DPg~------gf~ks~~~ 183 (257)
T cd00739 110 PAMLEVAAEYGAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIILDPGI------GFGKTPEH 183 (257)
T ss_pred hHHHHHHHHcCCCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEecCC------CcccCHHH
Confidence 4577888899999999987433221000011455677888999999999999999 79998832 25566677
Q ss_pred HHHHHHHHhhc
Q psy13372 168 AERLIRELRAH 178 (273)
Q Consensus 168 ~~~li~~~~~~ 178 (273)
..++++.++.+
T Consensus 184 ~~~~l~~i~~l 194 (257)
T cd00739 184 NLELLRRLDEL 194 (257)
T ss_pred HHHHHHHHHHH
Confidence 77777444433
No 180
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=85.00 E-value=20 Score=32.35 Aligned_cols=143 Identities=11% Similarity=-0.051 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHcCCCeEEecC-CCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcE--EEEccCCCCCCC----Cc
Q psy13372 88 ASLEKTIQYACALNIPAIHIMS-GKTESSRTQPIASEDPYTTLKENLIYACAELERHSLT--ALIEPVNQHSVP----GY 160 (273)
Q Consensus 88 ~~~~~~i~~a~~lG~~~i~~~~-G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~--i~lE~~~~~~~~----~~ 160 (273)
+...++++.|+++|.+.+.+.. |.. + .++..+++|.++-++=+++|-. +.+=++.+...+ ..
T Consensus 199 ~~wle~~~~Ah~lGI~~tatml~Gh~----------E-~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~ 267 (370)
T COG1060 199 EEWLEIHERAHRLGIPTTATMLLGHV----------E-TREDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVV 267 (370)
T ss_pred HHHHHHHHHHHHcCCCccceeEEEec----------C-CHHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCCccccCC
Confidence 5667799999999999886643 322 1 2678889999999888888842 332222221111 11
Q ss_pred ccCCHHHHHHHHHHHhhcCCCceeEeeec--ccccccCCChHHHHHhc-CCcceeEEeccCCCCC--CCCCCCcccHHHH
Q psy13372 161 YLSSFRVAERLIRELRAHGISNVQLQFDF--FNAQRICGDLTHTFGAC-RDLIGHVQIAQAPDRQ--EPHARGEIDYAYV 235 (273)
Q Consensus 161 ~~~~~~~~~~li~~~~~~~~~~~g~~~D~--~h~~~~~~~~~~~i~~~-~~~i~~vHi~d~~~~~--~~g~~G~id~~~i 235 (273)
.-.++.+.++++ .- -.+-++..+++ .-|...|..+....... ++.+.-....+..... .... .....+++
T Consensus 268 ~~~~~~~~l~~i---Ai-aRi~l~~~i~~~~a~w~~~g~~~~~~~l~~GanD~ggt~~~E~v~~~a~~~~~-~~~~~eel 342 (370)
T COG1060 268 PEASLEQDLKAI---AL-ARIFLDNNISNIQASWLRDGVILAQAALLSGANDLGGTGYEEKVNPAAGAFSG-DWRSVEEL 342 (370)
T ss_pred CCCCHHHHHHHH---HH-HHHHccCccccccCcccccchHHHHHHHHhCcccCcCCCcccccccccccccC-CCCCHHHH
Confidence 225566666666 32 22334433332 11222222222222222 3444444333321111 1111 35678999
Q ss_pred HHHHHHcCCCc
Q psy13372 236 FELLAREGYEG 246 (273)
Q Consensus 236 ~~~L~~~gy~g 246 (273)
.+.+++.||..
T Consensus 343 ~~~i~~aG~~p 353 (370)
T COG1060 343 AALIKEAGRIP 353 (370)
T ss_pred HHHHHHcCCCe
Confidence 99999999864
No 181
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=84.88 E-value=27 Score=30.88 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHcCCCeEEecC
Q psy13372 22 NYLDKYRVAAELGFRYIESWF 42 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~ 42 (273)
.+.++.+.++++|||+|||+.
T Consensus 150 ~~~~aA~ra~~aGfDgVeih~ 170 (338)
T cd04733 150 RFAHAARLAQEAGFDGVQIHA 170 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEch
Confidence 456667788999999999983
No 182
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=84.85 E-value=16 Score=35.04 Aligned_cols=107 Identities=12% Similarity=-0.022 Sum_probs=67.3
Q ss_pred HHHHHHHHHHcCCCeEEecCCCC-CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC
Q psy13372 23 YLDKYRVAAELGFRYIESWFPPV-GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN 101 (273)
Q Consensus 23 ~~~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG 101 (273)
....++.+++.|.+.|-+..+.. ........+..+++|+.+...-.+.. + |. ...+++.+.++.+..+|
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~-----~--p~---~t~~~~~~~a~~l~~~G 167 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTT-----S--PV---HTIEKYVELAKELEEMG 167 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEecc-----C--CC---CCHHHHHHHHHHHHHcC
Confidence 45668888999999988876532 12344445667888988763221111 1 11 13578888888888999
Q ss_pred CCeEEec--CCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 102 IPAIHIM--SGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 102 ~~~i~~~--~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
+..|.+. .|.. .+.....+++.+++ ..++.|.++.|+.
T Consensus 168 ad~I~i~Dt~G~~---------~P~~~~~lv~~lk~------~~~~pi~~H~Hnt 207 (592)
T PRK09282 168 CDSICIKDMAGLL---------TPYAAYELVKALKE------EVDLPVQLHSHCT 207 (592)
T ss_pred CCEEEECCcCCCc---------CHHHHHHHHHHHHH------hCCCeEEEEEcCC
Confidence 9999885 2322 33445555555553 3357888888654
No 183
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=84.83 E-value=13 Score=34.68 Aligned_cols=133 Identities=8% Similarity=-0.024 Sum_probs=81.7
Q ss_pred cchHHHHHHHHHHHHHHHhh---CCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCC-Cc-eeEeeecccccccCC
Q psy13372 123 EDPYTTLKENLIYACAELER---HSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGI-SN-VQLQFDFFNAQRICG 197 (273)
Q Consensus 123 ~~~~~~~~~~l~~l~~~a~~---~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~-~g~~~D~~h~~~~~~ 197 (273)
++.++++.+.-+++++...+ ..+++..-+ ++.|++++.+++ ++.+. ++ -|+.+-...+ ....
T Consensus 15 ~~~l~~~~~~~~~i~~~l~~~~~~~~~v~~~~---------~v~~~~~i~~~~---~~~~~~~~~dgvi~~m~TF-s~a~ 81 (484)
T cd03557 15 EEALKQVAAHSREIVDGLNASGKLPVKIVFKP---------VLTTPDEILAVC---REANADDNCAGVITWMHTF-SPAK 81 (484)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCeEEEEcc---------ccCCHHHHHHHH---HHccccCCccEEEEccCCC-chHH
Confidence 56788888888888888766 335555433 588999999999 88763 44 4555444333 2233
Q ss_pred ChHHHHHhcCCcceeEEeccCCCCC--CCCCCCc-------ccHHHHHHHHHHcCCCceEEEeeecCCChHHHHHHHHHh
Q psy13372 198 DLTHTFGACRDLIGHVQIAQAPDRQ--EPHARGE-------IDYAYVFELLAREGYEGYVGLEYKPQGNTKEGLEEFLKT 268 (273)
Q Consensus 198 ~~~~~i~~~~~~i~~vHi~d~~~~~--~~g~~G~-------id~~~i~~~L~~~gy~g~~~lE~~~~~~~~~~~~~~~~~ 268 (273)
-+...++.+.--+.|.|..++.... .+.. +- .--.++-..|.+.|.+-.++..+...+...+.+++|++.
T Consensus 82 ~~i~~~~~l~~PvL~~~~q~~~~l~~~sidm-d~m~l~qaahG~~e~~~il~R~gi~~~~v~G~~~d~~~~~~i~~w~ra 160 (484)
T cd03557 82 MWIAGLTALQKPLLHLHTQFNREIPWDTIDM-DFMNLNQSAHGDREFGFIGSRMRIPRKVVVGHWQDPEVHEKIGDWMRA 160 (484)
T ss_pred HHHHHHHHcCCCEEEEccCCCccCCCCCccc-hHHhhhhhcCCcHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHH
Confidence 4566677787788899988742110 1111 00 011233346777776655555554455677888889887
Q ss_pred h
Q psy13372 269 F 269 (273)
Q Consensus 269 ~ 269 (273)
.
T Consensus 161 a 161 (484)
T cd03557 161 A 161 (484)
T ss_pred H
Confidence 4
No 184
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=84.71 E-value=17 Score=34.92 Aligned_cols=107 Identities=13% Similarity=0.053 Sum_probs=66.9
Q ss_pred HHHHHHHHHHcCCCeEEecCCCC-CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC
Q psy13372 23 YLDKYRVAAELGFRYIESWFPPV-GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN 101 (273)
Q Consensus 23 ~~~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG 101 (273)
....++.+.+.|.+.|-+..+.. ........+.++++|+.+...-.+. .+ |- ...+++.+.++.+..+|
T Consensus 93 v~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t-----~~--p~---~~~~~~~~~~~~~~~~G 162 (582)
T TIGR01108 93 VERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYT-----TS--PV---HTLETYLDLAEELLEMG 162 (582)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEec-----cC--CC---CCHHHHHHHHHHHHHcC
Confidence 45568888999999988875532 1234555567888998876321111 11 10 13567888888889999
Q ss_pred CCeEEec--CCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 102 IPAIHIM--SGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 102 ~~~i~~~--~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
+..|.+. .|.. .+.....+++.|++ ..++.|.++.|+.
T Consensus 163 ad~I~i~Dt~G~~---------~P~~v~~lv~~lk~------~~~~pi~~H~Hnt 202 (582)
T TIGR01108 163 VDSICIKDMAGIL---------TPKAAYELVSALKK------RFGLPVHLHSHAT 202 (582)
T ss_pred CCEEEECCCCCCc---------CHHHHHHHHHHHHH------hCCCceEEEecCC
Confidence 9999885 2322 33445555555543 3357888888653
No 185
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=84.69 E-value=30 Score=33.28 Aligned_cols=107 Identities=10% Similarity=-0.004 Sum_probs=67.2
Q ss_pred HHHHHHHHHHcCCCeEEecCCC-CCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC
Q psy13372 23 YLDKYRVAAELGFRYIESWFPP-VGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN 101 (273)
Q Consensus 23 ~~~~l~~~~~~G~~~vEl~~~~-~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG 101 (273)
.+..++.+++.|.|-+-+.-.. +-...+.-.+.+++.|..+...-++.. + | -...+++.+.++.+..+|
T Consensus 98 v~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~-----s--p---~~t~e~~~~~ak~l~~~G 167 (596)
T PRK14042 98 VRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTT-----S--P---VHTLDNFLELGKKLAEMG 167 (596)
T ss_pred HHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecC-----C--C---CCCHHHHHHHHHHHHHcC
Confidence 4457888999999998886432 212344555667888987764322211 1 1 112567888888888899
Q ss_pred CCeEEec--CCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 102 IPAIHIM--SGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 102 ~~~i~~~--~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
+..|.+. .|.. .+.....+++.|++ ..++.|.++.|+.
T Consensus 168 ad~I~IkDtaG~l---------~P~~v~~lv~alk~------~~~ipi~~H~Hnt 207 (596)
T PRK14042 168 CDSIAIKDMAGLL---------TPTVTVELYAGLKQ------ATGLPVHLHSHST 207 (596)
T ss_pred CCEEEeCCcccCC---------CHHHHHHHHHHHHh------hcCCEEEEEeCCC
Confidence 9999884 2322 34455556665553 3468899888654
No 186
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=84.66 E-value=24 Score=30.12 Aligned_cols=132 Identities=8% Similarity=-0.054 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCC---CCH---HHH-HHHHHHcC--CeeEEEecCCccccCCCCCchhHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVG---VTL---EQL-VAAQTRHG--LKQVLINTEVDENFGYAAVKGKESEFRASLEK 92 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~---~~~---~~~-~~~l~~~g--L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (273)
.+.+.++++.+.|.++|=+.+..++ .+. .++ +...+..+ +.+.. ++. ..+ .+...+
T Consensus 19 ~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~-gv~------~~~--------~~~~i~ 83 (281)
T cd00408 19 ALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIA-GVG------ANS--------TREAIE 83 (281)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEE-ecC------Ccc--------HHHHHH
Confidence 5677788889999999988865221 122 222 23333332 33332 211 111 234566
Q ss_pred HHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHH
Q psy13372 93 TIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLI 172 (273)
Q Consensus 93 ~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li 172 (273)
.++.|+.+|+..+.+.+..... ..-+.++++++++++. .++.+.+-|.+.. ....-+++...++.
T Consensus 84 ~a~~a~~~Gad~v~v~pP~y~~---------~~~~~~~~~~~~ia~~---~~~pi~iYn~P~~---tg~~l~~~~~~~L~ 148 (281)
T cd00408 84 LARHAEEAGADGVLVVPPYYNK---------PSQEGIVAHFKAVADA---SDLPVILYNIPGR---TGVDLSPETIARLA 148 (281)
T ss_pred HHHHHHHcCCCEEEECCCcCCC---------CCHHHHHHHHHHHHhc---CCCCEEEEECccc---cCCCCCHHHHHHHh
Confidence 7778899999998886533211 1235667777766664 5788888886532 12344566666666
Q ss_pred HHHhhcCCCceeEeeec
Q psy13372 173 RELRAHGISNVQLQFDF 189 (273)
Q Consensus 173 ~~~~~~~~~~~g~~~D~ 189 (273)
+ .|++--.=|.
T Consensus 149 ---~---~~~v~giK~s 159 (281)
T cd00408 149 ---E---HPNIVGIKDS 159 (281)
T ss_pred ---c---CCCEEEEEeC
Confidence 5 3775555454
No 187
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=84.44 E-value=27 Score=31.03 Aligned_cols=130 Identities=15% Similarity=0.079 Sum_probs=0.0
Q ss_pred cCHHHHHHHHHHcCCCeEEecC-------------------CCCCCCH-----------HHHHHHHHH--cCCeeEEEec
Q psy13372 21 ANYLDKYRVAAELGFRYIESWF-------------------PPVGVTL-----------EQLVAAQTR--HGLKQVLINT 68 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~-------------------~~~~~~~-----------~~~~~~l~~--~gL~i~~~~~ 68 (273)
..+.++.+.++++|||+|||+. .|+ .+. +.+++.+.. -+++++.-..
T Consensus 152 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yG-GslenR~rf~~eii~air~~vg~d~v~vRis~~~~ 230 (338)
T cd02933 152 ADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYG-GSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGT 230 (338)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCC-CcHHHhhhHHHHHHHHHHHHhCCCceEEEECcccc
Q ss_pred CCccccCCCCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEE
Q psy13372 69 EVDENFGYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTAL 148 (273)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~ 148 (273)
..+...+.+ .+.....++.....|+..+.+..|..... .+..+...++.+++.. ++.+.
T Consensus 231 ~~~~~~~~~---------~ee~~~~~~~l~~~g~d~i~vs~g~~~~~------~~~~~~~~~~~ik~~~------~ipvi 289 (338)
T cd02933 231 FNDMGDSDP---------EATFSYLAKELNKRGLAYLHLVEPRVAGN------PEDQPPDFLDFLRKAF------KGPLI 289 (338)
T ss_pred CCCCCCCCC---------HHHHHHHHHHHHHcCCcEEEEecCCCCCc------ccccchHHHHHHHHHc------CCCEE
Q ss_pred EccCCCCCCCCcccCCHHHHHHHHHHHhhcCCCceeE
Q psy13372 149 IEPVNQHSVPGYYLSSFRVAERLIRELRAHGISNVQL 185 (273)
Q Consensus 149 lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~g~ 185 (273)
.-- -+. ++++.+++ ++-.-.-|++
T Consensus 290 ~~G---------~i~-~~~a~~~l---~~g~~D~V~~ 313 (338)
T cd02933 290 AAG---------GYD-AESAEAAL---ADGKADLVAF 313 (338)
T ss_pred EEC---------CCC-HHHHHHHH---HcCCCCEEEe
No 188
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=84.29 E-value=24 Score=31.06 Aligned_cols=78 Identities=10% Similarity=0.084 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHH-----HHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCc
Q psy13372 49 LEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEF-----RASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASE 123 (273)
Q Consensus 49 ~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~ 123 (273)
.....+.++++||.-+.++.. +-+++..... ++...+-|+.|...|..-|.+.+=..+.- .
T Consensus 100 L~~~a~~Lk~AGl~rVNVSLD-------sld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgv------N- 165 (322)
T COG2896 100 LARRAADLKEAGLDRVNVSLD-------SLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGV------N- 165 (322)
T ss_pred HHHHHHHHHHcCCcEEEeecc-------cCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCC------C-
Confidence 356666677777776655442 1245544443 48888999999999998443322111110 0
Q ss_pred chHHHHHHHHHHHHHHHhhCCcE
Q psy13372 124 DPYTTLKENLIYACAELERHSLT 146 (273)
Q Consensus 124 ~~~~~~~~~l~~l~~~a~~~gv~ 146 (273)
.+.+..++++++..|+.
T Consensus 166 ------d~ei~~l~e~~~~~~~~ 182 (322)
T COG2896 166 ------DDEIEDLLEFAKERGAQ 182 (322)
T ss_pred ------HHHHHHHHHHHhhcCCc
Confidence 12466788899999965
No 189
>PRK06852 aldolase; Validated
Probab=84.19 E-value=28 Score=30.43 Aligned_cols=76 Identities=12% Similarity=-0.017 Sum_probs=50.1
Q ss_pred HHHHHHcC------CCeEEecCCCC-------CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHH
Q psy13372 27 YRVAAELG------FRYIESWFPPV-------GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKT 93 (273)
Q Consensus 27 l~~~~~~G------~~~vEl~~~~~-------~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (273)
++.+-++| .++|-+....+ -.+..++.+..+++||.+.....+-+.. . .++. ..+.+.-+
T Consensus 121 VeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~--i-~~~~----~~~~ia~a 193 (304)
T PRK06852 121 VEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKA--V-KDEK----DPHLIAGA 193 (304)
T ss_pred HHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcc--c-CCCc----cHHHHHHH
Confidence 45555655 88998886532 1234677778899999988754333211 1 1111 13577788
Q ss_pred HHHHHHcCCCeEEecC
Q psy13372 94 IQYACALNIPAIHIMS 109 (273)
Q Consensus 94 i~~a~~lG~~~i~~~~ 109 (273)
+++|.+|||..|.+..
T Consensus 194 aRiaaELGADIVKv~y 209 (304)
T PRK06852 194 AGVAACLGADFVKVNY 209 (304)
T ss_pred HHHHHHHcCCEEEecC
Confidence 9999999999999864
No 190
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=84.18 E-value=21 Score=29.62 Aligned_cols=106 Identities=13% Similarity=0.098 Sum_probs=69.1
Q ss_pred cCHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEe-cCCccccCCCCCchhHHHHHHHHHHHHHHHHH
Q psy13372 21 ANYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLIN-TEVDENFGYAAVKGKESEFRASLEKTIQYACA 99 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 99 (273)
.++.+.++.+.++||.+|=+. | ..+...++.++..++.+.++- +|.| .+.. +.-..-++.|..
T Consensus 22 ~~i~~~~~~A~~~~~~avcv~-p---~~v~~a~~~l~~~~v~v~tVigFP~G----~~~~--------~~K~~e~~~Ai~ 85 (221)
T PRK00507 22 EDIDKLCDEAKEYGFASVCVN-P---SYVKLAAELLKGSDVKVCTVIGFPLG----ANTT--------AVKAFEAKDAIA 85 (221)
T ss_pred HHHHHHHHHHHHhCCeEEEEC-H---HHHHHHHHHhCCCCCeEEEEecccCC----CChH--------HHHHHHHHHHHH
Confidence 367778888899999999886 2 345677777887889988754 3332 2211 122234555667
Q ss_pred cCCCeEEec--CCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 100 LNIPAIHIM--SGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 100 lG~~~i~~~--~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
.|+..+-+. .+.+. ...|+.+.+.++++.+.+...-+++.||+
T Consensus 86 ~GA~EiD~Vin~~~~~---------~g~~~~v~~ei~~v~~~~~~~~lKvIlEt 130 (221)
T PRK00507 86 NGADEIDMVINIGALK---------SGDWDAVEADIRAVVEAAGGAVLKVIIET 130 (221)
T ss_pred cCCceEeeeccHHHhc---------CCCHHHHHHHHHHHHHhcCCceEEEEeec
Confidence 899987553 23332 22477888888888876644447899997
No 191
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=84.03 E-value=21 Score=31.59 Aligned_cols=108 Identities=11% Similarity=0.049 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCCeEEecCCCCC-CCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCC
Q psy13372 24 LDKYRVAAELGFRYIESWFPPVG-VTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNI 102 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~~-~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~ 102 (273)
.+-++.+.+.|.+.|-+...-.+ ....+..+.+++.|+++...-.... . .+ .+.+...++.+...|+
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~----~-~~-------~e~l~~~a~~~~~~Ga 157 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSH----M-TP-------PEKLAEQAKLMESYGA 157 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEccc----C-CC-------HHHHHHHHHHHHhcCC
Confidence 35578899999999988765221 2346777788999998874332210 1 11 2466777788888999
Q ss_pred CeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 103 PAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 103 ~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
..|.+.- ..+.. .+......+..+++. . ..++.+.++.|++
T Consensus 158 ~~i~i~D-T~G~~------~P~~v~~~v~~l~~~---l-~~~i~ig~H~Hnn 198 (333)
T TIGR03217 158 DCVYIVD-SAGAM------LPDDVRDRVRALKAV---L-KPETQVGFHAHHN 198 (333)
T ss_pred CEEEEcc-CCCCC------CHHHHHHHHHHHHHh---C-CCCceEEEEeCCC
Confidence 9988742 11111 334444444444432 1 1248899998764
No 192
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=84.02 E-value=24 Score=29.89 Aligned_cols=106 Identities=16% Similarity=0.083 Sum_probs=62.0
Q ss_pred HHHHHHHHHcCCCeEEecCCCC--------CC-------CHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFPPV--------GV-------TLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRA 88 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~--------~~-------~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (273)
.+-++.+.+.|.+.|.+..+-. .. ......+.+++.|+.+. ++.... +. .+ .+
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~-~~~~~~---~~-~~-------~~ 139 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS-VGAEDA---SR-AD-------PD 139 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE-EeeccC---CC-CC-------HH
Confidence 3446778888999888876421 01 12345566778898765 333211 01 11 35
Q ss_pred HHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 89 SLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 89 ~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
.+.+.++.+..+|+..|.+.- ..+.. .+.....+++.+++ ..++.+.++.|+.
T Consensus 140 ~~~~~~~~~~~~G~~~i~l~D-T~G~~------~P~~v~~lv~~l~~------~~~~~l~~H~Hn~ 192 (259)
T cd07939 140 FLIEFAEVAQEAGADRLRFAD-TVGIL------DPFTTYELIRRLRA------ATDLPLEFHAHND 192 (259)
T ss_pred HHHHHHHHHHHCCCCEEEeCC-CCCCC------CHHHHHHHHHHHHH------hcCCeEEEEecCC
Confidence 777788888889999988852 11121 33444455544443 3357888887654
No 193
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=83.85 E-value=9.9 Score=31.59 Aligned_cols=109 Identities=13% Similarity=0.083 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCC---------------CCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVG---------------VTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEF 86 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~---------------~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~ 86 (273)
+.+..++.+++.|.+.|.+..+..+ ....+..+.+++.|+.+. ++.... ...+
T Consensus 68 ~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~-~~~~~~----~~~~------- 135 (237)
T PF00682_consen 68 DIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVA-FGCEDA----SRTD------- 135 (237)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEE-EEETTT----GGSS-------
T ss_pred HHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceE-eCcccc----cccc-------
Confidence 4566678888999999999865321 123566677889999994 433211 0011
Q ss_pred HHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 87 RASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 87 ~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
.+++...++.+..+|+..|.+.-. .+.. .+.....+++.+ .+...+ +.|.++.|+.
T Consensus 136 ~~~~~~~~~~~~~~g~~~i~l~Dt-~G~~------~P~~v~~lv~~~---~~~~~~--~~l~~H~Hnd 191 (237)
T PF00682_consen 136 PEELLELAEALAEAGADIIYLADT-VGIM------TPEDVAELVRAL---REALPD--IPLGFHAHND 191 (237)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEEET-TS-S-------HHHHHHHHHHH---HHHSTT--SEEEEEEBBT
T ss_pred HHHHHHHHHHHHHcCCeEEEeeCc-cCCc------CHHHHHHHHHHH---HHhccC--CeEEEEecCC
Confidence 246777888888889999988521 1111 223333333333 333333 8888888664
No 194
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=83.72 E-value=24 Score=29.35 Aligned_cols=92 Identities=16% Similarity=0.108 Sum_probs=60.4
Q ss_pred HHHHHHHHHHcCCCeEEecCC--CCCCCHHHHHHHHHHcC-CeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHH
Q psy13372 23 YLDKYRVAAELGFRYIESWFP--PVGVTLEQLVAAQTRHG-LKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACA 99 (273)
Q Consensus 23 ~~~~l~~~~~~G~~~vEl~~~--~~~~~~~~~~~~l~~~g-L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 99 (273)
..+=++.++++|++||-+-.- .+..+.+.+.++++.++ |.++-|-.+ + ..++ -..+++....
T Consensus 75 M~~DI~~~~~lG~~GVV~G~lt~dg~iD~~~le~Li~aA~gL~vTFHrAF-D----~~~d----------~~~ale~li~ 139 (241)
T COG3142 75 MLEDIRLARELGVQGVVLGALTADGNIDMPRLEKLIEAAGGLGVTFHRAF-D----ECPD----------PLEALEQLIE 139 (241)
T ss_pred HHHHHHHHHHcCCCcEEEeeecCCCccCHHHHHHHHHHccCCceeeehhh-h----hcCC----------HHHHHHHHHH
Confidence 344577899999999998753 23467778887776554 776644322 1 1122 2346777788
Q ss_pred cCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHh
Q psy13372 100 LNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELE 141 (273)
Q Consensus 100 lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~ 141 (273)
+|+.+|-++.|..+. ..-.+.|+++.++++
T Consensus 140 ~Gv~RILTsGg~~sa------------~eg~~~l~~li~~a~ 169 (241)
T COG3142 140 LGVERILTSGGKASA------------LEGLDLLKRLIEQAK 169 (241)
T ss_pred CCCcEEecCCCcCch------------hhhHHHHHHHHHHhc
Confidence 999999886544221 234667888888887
No 195
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=83.46 E-value=17 Score=31.02 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHcCCCeEEec-CCCCCCCHHHHHHHHHHcCCeeEEEecC
Q psy13372 22 NYLDKYRVAAELGFRYIESW-FPPVGVTLEQLVAAQTRHGLKQVLINTE 69 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~-~~~~~~~~~~~~~~l~~~gL~i~~~~~~ 69 (273)
.+++.++.+++.|++||=+. .|. +..+.+++.++++||.++.+..|
T Consensus 103 G~e~F~~~~~~aGvdGlIipDLP~--ee~~~~~~~~~~~gl~~I~lv~p 149 (259)
T PF00290_consen 103 GIERFFKEAKEAGVDGLIIPDLPP--EESEELREAAKKHGLDLIPLVAP 149 (259)
T ss_dssp -HHHHHHHHHHHTEEEEEETTSBG--GGHHHHHHHHHHTT-EEEEEEET
T ss_pred chHHHHHHHHHcCCCEEEEcCCCh--HHHHHHHHHHHHcCCeEEEEECC
Confidence 67889999999999999886 243 35689999999999999987654
No 196
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=83.44 E-value=8.7 Score=32.16 Aligned_cols=116 Identities=9% Similarity=-0.024 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCCCC-CCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcc
Q psy13372 83 ESEFRASLEKTIQYACALNIPAIHIMSGKT-ESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYY 161 (273)
Q Consensus 83 ~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~ 161 (273)
.....+.+++.++.|..+|++.+++..-.. +..++ +...+..++-+.+.|.+..+...+.||++-+=- . ...+
T Consensus 30 H~~G~~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R~-~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~iG--~---~~~L 103 (233)
T PRK14833 30 HKKGVKTLREITIWCANHKLECLTLYAFSTENWKRP-KSEVDFLMKLLKKYLKDERSTYLENNIRFKAIG--D---LEGF 103 (233)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeecchhhcCcC-HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEe--C---hhhC
Confidence 345578899999999999999999976443 22221 000122233445556556666777898876432 1 1122
Q ss_pred cCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhcC
Q psy13372 162 LSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACR 207 (273)
Q Consensus 162 ~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~ 207 (273)
++...+.+++.++....+=++.+.++-.+....++.++++++.
T Consensus 104 ---p~~~~~~i~~~e~~T~~~~~~~Lnia~~Y~gr~EI~~A~~~~~ 146 (233)
T PRK14833 104 ---SKELRDTILQLEEDTRSFKGFTQVLALNYGSKDEISRAFKKLL 146 (233)
T ss_pred ---CHHHHHHHHHHHHHccCCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 3344445533355544554666666555443345666666554
No 197
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=83.38 E-value=16 Score=29.81 Aligned_cols=200 Identities=11% Similarity=0.016 Sum_probs=101.7
Q ss_pred cccccccccccccccccCHHHHHHHHHHcCCCeEEecCC---CC---CCCHHHHHHHHHHcCCeeEEEecCCccccCCCC
Q psy13372 5 SFKLAANLTLLFNDLAANYLDKYRVAAELGFRYIESWFP---PV---GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAA 78 (273)
Q Consensus 5 ~~k~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~---~~---~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~ 78 (273)
|++++.++ +..... .+.+.++.+.+.|.+.|++... +. ....+.++++.+.....+ .+++. ..
T Consensus 3 ~~~~~~s~-~~~~~~--~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~-~v~l~-------v~ 71 (220)
T PRK05581 3 MVLIAPSI-LSADFA--RLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPL-DVHLM-------VE 71 (220)
T ss_pred CcEEEcch-hcCCHH--HHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcE-EEEee-------eC
Confidence 45677776 455545 7889999999999999999642 11 123455555444333222 12221 11
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCC
Q psy13372 79 VKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVP 158 (273)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~ 158 (273)
++ .+.++.+..+|+..+.+|.+.. + . ..+..+..+++|+.+++=..+
T Consensus 72 d~----------~~~i~~~~~~g~d~v~vh~~~~--~---------~-------~~~~~~~~~~~~~~~g~~~~~----- 118 (220)
T PRK05581 72 NP----------DRYVPDFAKAGADIITFHVEAS--E---------H-------IHRLLQLIKSAGIKAGLVLNP----- 118 (220)
T ss_pred CH----------HHHHHHHHHcCCCEEEEeeccc--h---------h-------HHHHHHHHHHcCCEEEEEECC-----
Confidence 11 1234556688999999986521 1 1 122356677788887764311
Q ss_pred CcccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCC----hHHHHHhcCCcceeEEeccCCCCCCC-CCCCcccHH
Q psy13372 159 GYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGD----LTHTFGACRDLIGHVQIAQAPDRQEP-HARGEIDYA 233 (273)
Q Consensus 159 ~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~----~~~~i~~~~~~i~~vHi~d~~~~~~~-g~~G~id~~ 233 (273)
-+..+.+.++. ... + .+.++..+....+.. ..+.+++..+.+.. +..+ ... -. |-|+..
T Consensus 119 ---~t~~e~~~~~~---~~~--d--~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~---~~~~--~~i~v~-GGI~~~ 182 (220)
T PRK05581 119 ---ATPLEPLEDVL---DLL--D--LVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDE---RGLD--ILIEVD-GGINAD 182 (220)
T ss_pred ---CCCHHHHHHHH---hhC--C--EEEEEEECCCCCcccccHHHHHHHHHHHHHHHh---cCCC--ceEEEE-CCCCHH
Confidence 11233333344 333 2 344565444333321 12223322222111 0000 001 12 667775
Q ss_pred HHHHHHHHcCCCceEEE-eeecCCChHHHHHHH
Q psy13372 234 YVFELLAREGYEGYVGL-EYKPQGNTKEGLEEF 265 (273)
Q Consensus 234 ~i~~~L~~~gy~g~~~l-E~~~~~~~~~~~~~~ 265 (273)
-++.+.+.|-++.++- .+....++.+.++++
T Consensus 183 -nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~ 214 (220)
T PRK05581 183 -NIKECAEAGADVFVAGSAVFGAPDYKEAIDSL 214 (220)
T ss_pred -HHHHHHHcCCCEEEEChhhhCCCCHHHHHHHH
Confidence 4555666888876553 344556777777733
No 198
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=83.14 E-value=29 Score=29.82 Aligned_cols=129 Identities=13% Similarity=0.039 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCC---CCH---HHHH-HHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVG---VTL---EQLV-AAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTI 94 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~---~~~---~~~~-~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (273)
.+.+.++++.+.|.++|=+.+..++ .+. .++. ...+..+ .+. .++. ..+ .+...+.+
T Consensus 21 ~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~-~vi-~gvg------~~~--------~~~ai~~a 84 (279)
T cd00953 21 KFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD-KVI-FQVG------SLN--------LEESIELA 84 (279)
T ss_pred HHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcC-CEE-EEeC------cCC--------HHHHHHHH
Confidence 5778888999999999999865321 122 2222 2333333 222 2221 111 24556678
Q ss_pred HHHHHcCCCeEEecCC-CCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHH
Q psy13372 95 QYACALNIPAIHIMSG-KTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIR 173 (273)
Q Consensus 95 ~~a~~lG~~~i~~~~G-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~ 173 (273)
+.|+.+|+..+.+.+. ..... ..+.++++++.+++ ++.+.+-|.+.. ....-+++...++.
T Consensus 85 ~~a~~~Gad~v~v~~P~y~~~~---------~~~~i~~yf~~v~~-----~lpv~iYn~P~~---tg~~l~~~~l~~L~- 146 (279)
T cd00953 85 RAAKSFGIYAIASLPPYYFPGI---------PEEWLIKYFTDISS-----PYPTFIYNYPKA---TGYDINARMAKEIK- 146 (279)
T ss_pred HHHHHcCCCEEEEeCCcCCCCC---------CHHHHHHHHHHHHh-----cCCEEEEeCccc---cCCCCCHHHHHHHH-
Confidence 8889999999877543 22211 13577778888777 578888886532 22334566666666
Q ss_pred HHhhcCCCceeEeee
Q psy13372 174 ELRAHGISNVQLQFD 188 (273)
Q Consensus 174 ~~~~~~~~~~g~~~D 188 (273)
+.. |++--.=|
T Consensus 147 --~~~--p~vvgiK~ 157 (279)
T cd00953 147 --KAG--GDIIGVKD 157 (279)
T ss_pred --hcC--CCEEEEEe
Confidence 543 66544444
No 199
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=83.13 E-value=8.1 Score=32.78 Aligned_cols=115 Identities=10% Similarity=-0.004 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCCCC-CCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcc
Q psy13372 83 ESEFRASLEKTIQYACALNIPAIHIMSGKT-ESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYY 161 (273)
Q Consensus 83 ~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~ 161 (273)
.....+.++..++.|..+|++++++..-.. ++.++ +......++-+.+.|.+..+...+.||++-+--- .
T Consensus 40 H~~G~~~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~-~~EV~~Lm~l~~~~l~~~~~~~~~~~irv~viG~--------~ 110 (253)
T PRK14836 40 HRAGVRAVRRTIEFCLEKGIEMLTLFAFSSENWLRP-ADEVSALMELFLKALDREVDKLHRNGIRVRFIGD--------R 110 (253)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEehhHhhhhhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEec--------c
Confidence 345567899999999999999999965332 22221 0001122344555566666777789998876531 1
Q ss_pred cCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhc
Q psy13372 162 LSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGAC 206 (273)
Q Consensus 162 ~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~ 206 (273)
-.-++...+.+++.+.....+=++++.++-.+-...++.++++.+
T Consensus 111 ~~Lp~~~~~~i~~~e~~T~~n~~~~Lnla~~YggR~EI~~A~k~l 155 (253)
T PRK14836 111 SRLSPKLQERMEYAERLTASNTRLILSLAVSYGGRWDIVTAARAL 155 (253)
T ss_pred ccCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHH
Confidence 112334444553335555555556665544433223455555444
No 200
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=83.11 E-value=7.5 Score=32.54 Aligned_cols=114 Identities=11% Similarity=-0.033 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEecCCCC-CCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCccc
Q psy13372 84 SEFRASLEKTIQYACALNIPAIHIMSGKT-ESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYL 162 (273)
Q Consensus 84 ~~~~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~ 162 (273)
....+.+...++.|..+|++.+++..-.. +..++ +......++-+.+.|.+..+...+.||++-+=- ..-
T Consensus 30 ~~G~~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~-~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~iG--------~~~ 100 (233)
T PRK14841 30 QRGAEVLHNTVKWSLELGIKYLTAFSFSTENWKRP-KEEVEFLMDLFVQMIDREMELLRRERVRVRILG--------RKE 100 (233)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeeeHhhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEe--------Chh
Confidence 44567899999999999999999975433 22221 000122244444555566677778898876542 111
Q ss_pred CCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhc
Q psy13372 163 SSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGAC 206 (273)
Q Consensus 163 ~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~ 206 (273)
.-+++..+.+++++.....+=++++.++-.+-...++.++++++
T Consensus 101 ~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~ 144 (233)
T PRK14841 101 GLPEKVLKKWQEVEEKTKEFDRMTLVIAFNYGGRREILDAVESI 144 (233)
T ss_pred hCCHHHHHHHHHHHHHhcCCCCcEEEEEecCCCHHHHHHHHHHH
Confidence 22344555554434544344345555443333233455555544
No 201
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=83.08 E-value=8.3 Score=32.63 Aligned_cols=115 Identities=11% Similarity=0.038 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCCCC-CCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcc
Q psy13372 83 ESEFRASLEKTIQYACALNIPAIHIMSGKT-ESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYY 161 (273)
Q Consensus 83 ~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~ 161 (273)
.....+.++..++.|..+|++.+++..-.. +..++ +......++-+.+.|.+..+...+.||++-+=- . ...+
T Consensus 48 H~~G~~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~-~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iG--d---~~~L 121 (250)
T PRK14840 48 HYYGAKSLPQIVDTALHLGIEVLTLFAFSTENFSRS-KEEVAELFSLFNSQLDSQLPYLHENEIRLRCIG--D---LSKL 121 (250)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEe--C---hhhC
Confidence 445678899999999999999999975433 22221 001223344556677777778888999876542 1 1123
Q ss_pred cCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhc
Q psy13372 162 LSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGAC 206 (273)
Q Consensus 162 ~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~ 206 (273)
+++..+.+++.++....+=++++.++-.+-...++.++++.+
T Consensus 122 ---p~~l~~~i~~~e~~T~~~~~~~Lnla~~Yggr~EI~~A~~~~ 163 (250)
T PRK14840 122 ---PQELQNNIEQASSATAHYSRMELVLAINYGGKDELVRAFKKL 163 (250)
T ss_pred ---CHHHHHHHHHHHHHhccCCceEEEEEecCCcHHHHHHHHHHH
Confidence 233444443335554455566666554443333455555554
No 202
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=82.73 E-value=27 Score=31.84 Aligned_cols=105 Identities=12% Similarity=0.027 Sum_probs=66.1
Q ss_pred HHHHHHcCCCeEEecCCCC------CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHc
Q psy13372 27 YRVAAELGFRYIESWFPPV------GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACAL 100 (273)
Q Consensus 27 l~~~~~~G~~~vEl~~~~~------~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l 100 (273)
++.+.+.|..++-....|. .....++.+.++++|..+..+.-.. . ....+.+++.++++...
T Consensus 173 ~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~-------~-----~~e~~av~~~~~~a~~~ 240 (415)
T cd01297 173 LREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYE-------G-----DSILEALDELLRLGRET 240 (415)
T ss_pred HHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECcc-------c-----ccHHHHHHHHHHHHHHh
Confidence 3344568998887654321 1234566677889999877654210 0 11246788899999999
Q ss_pred CCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCC
Q psy13372 101 NIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVN 153 (273)
Q Consensus 101 G~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~ 153 (273)
|++....|....... .+..+.+.+ ++.+.|++.|+.+..|..+
T Consensus 241 g~r~~i~H~ss~~~~---------~~~~~~~~l-~~i~~a~~~G~~v~~e~~p 283 (415)
T cd01297 241 GRPVHISHLKSAGAP---------NWGKIDRLL-ALIEAARAEGLQVTADVYP 283 (415)
T ss_pred CCCEEEEEEecCCCc---------ccchHHHHH-HHHHHHHHhCCcEEEEeCC
Confidence 999888776543221 123333333 3445677889999999865
No 203
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=82.71 E-value=9.5 Score=32.01 Aligned_cols=114 Identities=10% Similarity=0.005 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCCCC-CCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcc
Q psy13372 83 ESEFRASLEKTIQYACALNIPAIHIMSGKT-ESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYY 161 (273)
Q Consensus 83 ~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~ 161 (273)
.....+.+...++.|..+|++.+++..-.. +..++ +......++-+.+.|.+..+...+.||++-+=- ..
T Consensus 35 H~~G~~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~-~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iG--------d~ 105 (239)
T PRK14839 35 HRAGVEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRP-AAEVGGLMRLLRAYLRNETERLARNGVRLTVIG--------RR 105 (239)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEechhhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEe--------Ch
Confidence 345578899999999999999999975433 22221 000122234444556666677778899865432 11
Q ss_pred cCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHh
Q psy13372 162 LSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGA 205 (273)
Q Consensus 162 ~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~ 205 (273)
-.-+++..+.+++.++....+=++++.++-.+-...++.++++.
T Consensus 106 ~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~ 149 (239)
T PRK14839 106 DRLPDGIPEAIARAEAATAGGDRLHLRIAVDYSARDAILAAAAK 149 (239)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHH
Confidence 12234445555343555444445555554333222345555554
No 204
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=82.47 E-value=11 Score=33.83 Aligned_cols=65 Identities=11% Similarity=0.011 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHcCCCeEEecCCCC-CCC--C-CCCC-C-----C---------------cchHHHHHHHHHHHHHHHh
Q psy13372 87 RASLEKTIQYACALNIPAIHIMSGKT-ESS--R-TQPI-A-----S---------------EDPYTTLKENLIYACAELE 141 (273)
Q Consensus 87 ~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~--~-~~~~-~-----~---------------~~~~~~~~~~l~~l~~~a~ 141 (273)
++.+++.|+.++.++.+.+++|.... +.. . .-|. . . ...--...+-+++++++|+
T Consensus 17 ~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~ 96 (357)
T cd06563 17 VDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIVAYAA 96 (357)
T ss_pred HHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHHHHHH
Confidence 67899999999999999999886321 100 0 0000 0 0 0011234677999999999
Q ss_pred hCCcEEEEcc
Q psy13372 142 RHSLTALIEP 151 (273)
Q Consensus 142 ~~gv~i~lE~ 151 (273)
++||+|..|-
T Consensus 97 ~rgI~VIPEI 106 (357)
T cd06563 97 ERGITVIPEI 106 (357)
T ss_pred HcCCEEEEec
Confidence 9999999984
No 205
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=82.46 E-value=9.5 Score=32.32 Aligned_cols=110 Identities=13% Similarity=0.052 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEecCCCC-CCCCCCCCCCcch----HHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCC
Q psy13372 84 SEFRASLEKTIQYACALNIPAIHIMSGKT-ESSRTQPIASEDP----YTTLKENLIYACAELERHSLTALIEPVNQHSVP 158 (273)
Q Consensus 84 ~~~~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~~~~~~~~~~~----~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~ 158 (273)
....+.+...++.|..+|++.+++..-.. +..+ +++. ++-+.+.|.++++...+.||++-+-- . .
T Consensus 49 ~~G~~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R-----~~~Ev~~Lm~l~~~~l~~~~~~~~~~~iri~viG--~---~ 118 (251)
T PRK14830 49 KAGMDTVKKITKAASELGVKVLTLYAFSTENWKR-----PKDEVKFLMNLPVEFLDKFVPELIENNVKVNVIG--D---T 118 (251)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEEehhhcCC-----CHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEEc--C---h
Confidence 34567889999999999999999865332 1222 2333 33345567777777788999987664 1 1
Q ss_pred CcccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhc
Q psy13372 159 GYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGAC 206 (273)
Q Consensus 159 ~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~ 206 (273)
..+ +++..+.+.+.++....+=++++.++-.+-...++.++++.+
T Consensus 119 ~~L---p~~~~~~~~~~e~~T~~~~~~~Lnia~~YggR~EI~~A~~~~ 163 (251)
T PRK14830 119 DRL---PEHTLRALEKAIEKTKNNTGLILNFALNYGGRAEIVSAVKEI 163 (251)
T ss_pred hhC---CHHHHHHHHHHHHHccCCCceEEEEEecCCCHHHHHHHHHHH
Confidence 112 334444443335555555566666544433333455555554
No 206
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=82.44 E-value=7.8 Score=33.97 Aligned_cols=56 Identities=7% Similarity=0.036 Sum_probs=43.4
Q ss_pred HHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 93 TIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 93 ~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
..+..+++|+..+.+...+.+.+ +++.-++-...++++.+.+++.++.+.||++..
T Consensus 112 s~~rike~GadavK~Llyy~pD~------~~ein~~k~a~vervg~eC~a~dipf~lE~l~Y 167 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYDVDG------DEEINDQKQAYIERIGSECTAEDIPFFLELLTY 167 (329)
T ss_pred hHHHHHHhCCCeEEEEEEECCCC------CHHHHHHHHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 44555889999998876555433 455566777889999999999999999999764
No 207
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=82.36 E-value=27 Score=29.68 Aligned_cols=106 Identities=14% Similarity=0.084 Sum_probs=63.5
Q ss_pred HHHHHHHHHcCCCeEEecCCCC-CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCC
Q psy13372 24 LDKYRVAAELGFRYIESWFPPV-GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNI 102 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~ 102 (273)
.+-++.+.+.|.+.|-+..+.. .....+..+.+++.|+++..-..... . .++ +.+.+.++.+.++|+
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~----~-~~~-------~~~~~~~~~~~~~G~ 155 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSH----M-ASP-------EELAEQAKLMESYGA 155 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEecc----C-CCH-------HHHHHHHHHHHHcCC
Confidence 3457778888888888876532 12346667778889988764221110 1 122 567778888889999
Q ss_pred CeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCC-cEEEEccCCC
Q psy13372 103 PAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHS-LTALIEPVNQ 154 (273)
Q Consensus 103 ~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~g-v~i~lE~~~~ 154 (273)
..|.+.- ..+.. .+.....+++.+++ ..+ +.+.++.|+.
T Consensus 156 d~i~l~D-T~G~~------~P~~v~~lv~~l~~------~~~~~~l~~H~Hn~ 195 (263)
T cd07943 156 DCVYVTD-SAGAM------LPDDVRERVRALRE------ALDPTPVGFHGHNN 195 (263)
T ss_pred CEEEEcC-CCCCc------CHHHHHHHHHHHHH------hCCCceEEEEecCC
Confidence 9988742 12222 34445555555543 233 4888888654
No 208
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=82.33 E-value=30 Score=29.44 Aligned_cols=180 Identities=19% Similarity=0.086 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHcCCCeEEecCC---CCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFP---PVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYAC 98 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~---~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~ 98 (273)
++.+......+.|.++|-+... +. .+.+.+++.-+...+.|..- ++ . .++ + -++.+.
T Consensus 71 ~~~~~A~~~~~~GA~aisvlte~~~f~-g~~~~l~~v~~~v~iPvl~k------df-i-~~~---------~--qi~~a~ 130 (260)
T PRK00278 71 DPVEIAKAYEAGGAACLSVLTDERFFQ-GSLEYLRAARAAVSLPVLRK------DF-I-IDP---------Y--QIYEAR 130 (260)
T ss_pred CHHHHHHHHHhCCCeEEEEecccccCC-CCHHHHHHHHHhcCCCEEee------ee-c-CCH---------H--HHHHHH
Confidence 6788888889999999977643 22 45666666655555555431 11 1 111 2 477888
Q ss_pred HcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhc
Q psy13372 99 ALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAH 178 (273)
Q Consensus 99 ~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~ 178 (273)
..||..|.+.....+ .+.++++.+.++..|+.+.+|.+ +.+++.+.. ..
T Consensus 131 ~~GAD~VlLi~~~l~----------------~~~l~~li~~a~~lGl~~lvevh-----------~~~E~~~A~----~~ 179 (260)
T PRK00278 131 AAGADAILLIVAALD----------------DEQLKELLDYAHSLGLDVLVEVH-----------DEEELERAL----KL 179 (260)
T ss_pred HcCCCEEEEEeccCC----------------HHHHHHHHHHHHHcCCeEEEEeC-----------CHHHHHHHH----Hc
Confidence 999999998653321 14688899999999999999964 345655544 45
Q ss_pred CCCceeEeeecccccccCCChHHHHHhcCCcceeEEeccCCCCCCCCCCCcccHHHHHHHHHHcCCCceEEEee-ecCCC
Q psy13372 179 GISNVQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAPDRQEPHARGEIDYAYVFELLAREGYEGYVGLEY-KPQGN 257 (273)
Q Consensus 179 ~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~~vHi~d~~~~~~~g~~G~id~~~i~~~L~~~gy~g~~~lE~-~~~~~ 257 (273)
+..-+|++- -.......++ +...++.+.+.. + ...... |-+.-++-++.+.+.|+++.++-+- ....+
T Consensus 180 gadiIgin~--rdl~~~~~d~-~~~~~l~~~~p~----~---~~vIae-gGI~t~ed~~~~~~~Gad~vlVGsaI~~~~d 248 (260)
T PRK00278 180 GAPLIGINN--RNLKTFEVDL-ETTERLAPLIPS----D---RLVVSE-SGIFTPEDLKRLAKAGADAVLVGESLMRADD 248 (260)
T ss_pred CCCEEEECC--CCcccccCCH-HHHHHHHHhCCC----C---CEEEEE-eCCCCHHHHHHHHHcCCCEEEECHHHcCCCC
Confidence 656677641 0111122332 223333222210 0 111223 3343344455666789999877663 34566
Q ss_pred hHHHHH
Q psy13372 258 TKEGLE 263 (273)
Q Consensus 258 ~~~~~~ 263 (273)
+.+.++
T Consensus 249 p~~~~~ 254 (260)
T PRK00278 249 PGAALR 254 (260)
T ss_pred HHHHHH
Confidence 777666
No 209
>PRK10425 DNase TatD; Provisional
Probab=82.23 E-value=30 Score=29.39 Aligned_cols=125 Identities=6% Similarity=-0.105 Sum_probs=68.2
Q ss_pred cCHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHc
Q psy13372 21 ANYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACAL 100 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l 100 (273)
.+.++.++.+++.|...+=..... ..+..+..++.+++.--..+++.... .. ++..+..++.+.+.+ ..
T Consensus 15 ~d~~~vl~~a~~~gv~~~i~~~~~-~~~~~~~~~l~~~~~~v~~~~GiHP~----~~--~~~~~~~~~~l~~~~---~~- 83 (258)
T PRK10425 15 KDRDDVVARAFAAGVNGMLITGTN-LRESQQAQKLARQYPSCWSTAGVHPH----DS--SQWQAATEEAIIELA---AQ- 83 (258)
T ss_pred ccHHHHHHHHHHCCCCEEEEeCCC-HHHHHHHHHHHHhCCCEEEEEEeCcC----cc--ccCCHHHHHHHHHhc---cC-
Confidence 378899999999997665443322 13456677777777543334444311 11 111112233333322 11
Q ss_pred CCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHH
Q psy13372 101 NIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLI 172 (273)
Q Consensus 101 G~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li 172 (273)
.+.+.+ |-.+-+.. . .....+...+.+++-+++|++++..+.|+.- ...+++++++
T Consensus 84 -~~~vaI--GEiGLDy~--~-~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r----------~a~~~~l~iL 139 (258)
T PRK10425 84 -PEVVAI--GECGLDFN--R-NFSTPEEQERAFVAQLAIAAELNMPVFMHCR----------DAHERFMALL 139 (258)
T ss_pred -CCEEEE--eeeeeccc--c-CCCCHHHHHHHHHHHHHHHHHhCCCeEEEEe----------CchHHHHHHH
Confidence 122222 33322210 0 1123456678899999999999999999873 2336778888
No 210
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=82.20 E-value=11 Score=31.39 Aligned_cols=114 Identities=14% Similarity=0.044 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEecCCCC-CCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCccc
Q psy13372 84 SEFRASLEKTIQYACALNIPAIHIMSGKT-ESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYL 162 (273)
Q Consensus 84 ~~~~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~ 162 (273)
....+.++..++.|..+|++.+++..-.. +..++ +...+..++-+.+.|.+.++...+.||++-+=- ..-
T Consensus 20 ~~G~~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~-~~Ev~~Lm~l~~~~l~~~~~~~~~~~i~vr~iG--------~~~ 90 (229)
T PRK10240 20 KAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRP-AQEVSALMELFVWALDSEVKSLHRHNVRLRIIG--------DTS 90 (229)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeeehhhcCcC-HHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEe--------Chh
Confidence 34567899999999999999999975433 22221 000122234455556666666778888765432 111
Q ss_pred CCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhc
Q psy13372 163 SSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGAC 206 (273)
Q Consensus 163 ~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~ 206 (273)
.-+++..+.+++.+.....+=++++.++-.+-...++.++++.+
T Consensus 91 ~Lp~~l~~~i~~~e~~T~~~~~~~Lnla~~Yggr~EI~~A~~~~ 134 (229)
T PRK10240 91 RFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQL 134 (229)
T ss_pred hCCHHHHHHHHHHHHHhcCCCCeEEEEEeccCCHHHHHHHHHHH
Confidence 12334455553335444444445555543332223455555554
No 211
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=82.20 E-value=17 Score=31.20 Aligned_cols=111 Identities=10% Similarity=0.081 Sum_probs=64.1
Q ss_pred HHHHHHHHcCCCeEEecCCCC--------CCC-------HHHHHHHHHHcCCeeEE-EecCCccccCCCCCchhHHHHHH
Q psy13372 25 DKYRVAAELGFRYIESWFPPV--------GVT-------LEQLVAAQTRHGLKQVL-INTEVDENFGYAAVKGKESEFRA 88 (273)
Q Consensus 25 ~~l~~~~~~G~~~vEl~~~~~--------~~~-------~~~~~~~l~~~gL~i~~-~~~~~~~~~~~~~~~~~~~~~~~ 88 (273)
+-++.+.+.|.+.|.+..+-. ..+ ..+..+..+++|+.+.. +....+. ++... ...+
T Consensus 77 ~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~-----~~~~~--~~~~ 149 (274)
T cd07938 77 RGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGC-----PYEGE--VPPE 149 (274)
T ss_pred HHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecC-----CCCCC--CCHH
Confidence 348888899999998886521 111 24556678899998862 2211110 11000 1246
Q ss_pred HHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 89 SLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 89 ~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
.+.+.++.+.++|+..|.+.-. .+.. .+.....+++.+++ .. -++.+.++.|+.
T Consensus 150 ~~~~~~~~~~~~Ga~~i~l~DT-~G~~------~P~~v~~lv~~l~~---~~--~~~~i~~H~Hnd 203 (274)
T cd07938 150 RVAEVAERLLDLGCDEISLGDT-IGVA------TPAQVRRLLEAVLE---RF--PDEKLALHFHDT 203 (274)
T ss_pred HHHHHHHHHHHcCCCEEEECCC-CCcc------CHHHHHHHHHHHHH---HC--CCCeEEEEECCC
Confidence 7778888888899999988521 1111 33444445544443 21 148888888654
No 212
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=82.17 E-value=26 Score=29.81 Aligned_cols=179 Identities=20% Similarity=0.131 Sum_probs=95.9
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCC--CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPV--GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACA 99 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~--~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 99 (273)
++.+......+.|.++|.+..... ..+.+.+.+..+..++.+-.= ++ . .+| --|..|..
T Consensus 69 d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~~~PvL~K------DF-I-id~-----------~QI~eA~~ 129 (254)
T PF00218_consen 69 DPAEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAVDLPVLRK------DF-I-IDP-----------YQIYEARA 129 (254)
T ss_dssp SHHHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHSSS-EEEE------S-----SH-----------HHHHHHHH
T ss_pred CHHHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHhCCCcccc------cC-C-CCH-----------HHHHHHHH
Confidence 667777777777777777764311 134455555554444433321 11 1 111 24667788
Q ss_pred cCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcC
Q psy13372 100 LNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHG 179 (273)
Q Consensus 100 lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 179 (273)
+||..|-+.....+. +.|.++.++|+..|+...+|.+ |.+++.+.+ ..+
T Consensus 130 ~GADaVLLI~~~L~~----------------~~l~~l~~~a~~lGle~lVEVh-----------~~~El~~al----~~~ 178 (254)
T PF00218_consen 130 AGADAVLLIAAILSD----------------DQLEELLELAHSLGLEALVEVH-----------NEEELERAL----EAG 178 (254)
T ss_dssp TT-SEEEEEGGGSGH----------------HHHHHHHHHHHHTT-EEEEEES-----------SHHHHHHHH----HTT
T ss_pred cCCCEeehhHHhCCH----------------HHHHHHHHHHHHcCCCeEEEEC-----------CHHHHHHHH----HcC
Confidence 999999887655422 2478899999999999999974 456666555 445
Q ss_pred CCceeEeeecccccccCCChHHHHHhcCCcce--eEEeccCCCCCCCCCCCcccHHHHHHHHHHcCCCceEEEeee-cCC
Q psy13372 180 ISNVQLQFDFFNAQRICGDLTHTFGACRDLIG--HVQIAQAPDRQEPHARGEIDYAYVFELLAREGYEGYVGLEYK-PQG 256 (273)
Q Consensus 180 ~~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~--~vHi~d~~~~~~~g~~G~id~~~i~~~L~~~gy~g~~~lE~~-~~~ 256 (273)
.+-+|++= -+...-.-|+.. ..++.+.+. .+-++ . +-|.-..-+..+++.||+|.++=|.. ...
T Consensus 179 a~iiGINn--RdL~tf~vd~~~-~~~l~~~ip~~~~~is---------e-SGI~~~~d~~~l~~~G~davLVGe~lm~~~ 245 (254)
T PF00218_consen 179 ADIIGINN--RDLKTFEVDLNR-TEELAPLIPKDVIVIS---------E-SGIKTPEDARRLARAGADAVLVGEALMRSP 245 (254)
T ss_dssp -SEEEEES--BCTTTCCBHTHH-HHHHHCHSHTTSEEEE---------E-SS-SSHHHHHHHCTTT-SEEEESHHHHTSS
T ss_pred CCEEEEeC--ccccCcccChHH-HHHHHhhCccceeEEe---------e-cCCCCHHHHHHHHHCCCCEEEECHHHhCCC
Confidence 55577651 111111222222 223333332 22222 2 33444455567778999998887744 445
Q ss_pred ChHHHHH
Q psy13372 257 NTKEGLE 263 (273)
Q Consensus 257 ~~~~~~~ 263 (273)
++.+.++
T Consensus 246 d~~~~~~ 252 (254)
T PF00218_consen 246 DPGEALR 252 (254)
T ss_dssp SHHHHHH
T ss_pred CHHHHHh
Confidence 5665554
No 213
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=82.17 E-value=26 Score=31.74 Aligned_cols=119 Identities=13% Similarity=0.047 Sum_probs=74.3
Q ss_pred cccccccccccccC-HHHHHHHHHHcCCCeEEecCC-CCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHH
Q psy13372 9 AANLTLLFNDLAAN-YLDKYRVAAELGFRYIESWFP-PVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEF 86 (273)
Q Consensus 9 ~~~~~~~~~~~~~~-~~~~l~~~~~~G~~~vEl~~~-~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~ 86 (273)
|.|+ ..+.+...+ .+..++.+.+.|.|-+-+.-- .|..+.+.-.++.+++|..+...-++. .+ | -..
T Consensus 86 GQNl-vGYrhyaDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT-----~s--P---vHt 154 (472)
T COG5016 86 GQNL-VGYRHYADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYT-----TS--P---VHT 154 (472)
T ss_pred cCcc-ccccCCchHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEec-----cC--C---ccc
Confidence 6666 556655334 455578889999998888632 233556666778899998776433321 11 1 123
Q ss_pred HHHHHHHHHHHHHcCCCeEEec--CCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCC
Q psy13372 87 RASLEKTIQYACALNIPAIHIM--SGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVN 153 (273)
Q Consensus 87 ~~~~~~~i~~a~~lG~~~i~~~--~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~ 153 (273)
++++.+..+...++|+..|.+- +|-. ++..--.+++.+++ ..++.+.+++|.
T Consensus 155 ~e~yv~~akel~~~g~DSIciKDmaGll---------tP~~ayelVk~iK~------~~~~pv~lHtH~ 208 (472)
T COG5016 155 LEYYVELAKELLEMGVDSICIKDMAGLL---------TPYEAYELVKAIKK------ELPVPVELHTHA 208 (472)
T ss_pred HHHHHHHHHHHHHcCCCEEEeecccccC---------ChHHHHHHHHHHHH------hcCCeeEEeccc
Confidence 5677777777788999999883 4544 22233345555554 355888888754
No 214
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=82.15 E-value=32 Score=29.69 Aligned_cols=141 Identities=11% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCeEEecC---CCCCCCH---HHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWF---PPVGVTL---EQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYA 97 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~---~~~~~~~---~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 97 (273)
.+.+..+-++||+.|.+.. |++ ..+ +++.+....+|+.+-.=-...++.-.- ......+.....-..+.++.
T Consensus 85 ~e~i~~ai~~GFtSVM~DgS~lp~e-eNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~-~~~~~~~~~~T~peea~~Fv 162 (282)
T TIGR01858 85 LDDIRQKVHAGVRSAMIDGSHFPFA-QNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDD-LSVDEEDALYTDPQEAKEFV 162 (282)
T ss_pred HHHHHHHHHcCCCEEeecCCCCCHH-HHHHHHHHHHHHHHHcCCeEEEEEEecCCccCC-CccccchhccCCHHHHHHHH
Q ss_pred HHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhh
Q psy13372 98 CALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRA 177 (273)
Q Consensus 98 ~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~ 177 (273)
++.|+..+-+-.|..=.. +...-+--.+.|+++.+.. ++.+.++ +.-..+.++..+.+ +.
T Consensus 163 ~~TgvD~LAvaiGt~HG~------yk~~p~Ldf~~L~~I~~~~---~iPLVlH--------GgSG~~~e~~~~ai---~~ 222 (282)
T TIGR01858 163 EATGVDSLAVAIGTAHGL------YKKTPKLDFDRLAEIREVV---DVPLVLH--------GASDVPDEDVRRTI---EL 222 (282)
T ss_pred HHHCcCEEecccCccccC------cCCCCccCHHHHHHHHHHh---CCCeEEe--------cCCCCCHHHHHHHH---Hc
Q ss_pred cCCCceeEeeec
Q psy13372 178 HGISNVQLQFDF 189 (273)
Q Consensus 178 ~~~~~~g~~~D~ 189 (273)
--.+++++|
T Consensus 223 ---Gi~KiNi~T 231 (282)
T TIGR01858 223 ---GICKVNVAT 231 (282)
T ss_pred ---CCeEEEeCc
No 215
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=82.13 E-value=6.5 Score=34.77 Aligned_cols=65 Identities=14% Similarity=0.080 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHcCCCeEEecCCCC-CCC--C-CCCCCCc-ch---------HHHHHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 87 RASLEKTIQYACALNIPAIHIMSGKT-ESS--R-TQPIASE-DP---------YTTLKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 87 ~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~--~-~~~~~~~-~~---------~~~~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
++.+++.|+.++..+.+.+++|...- +.. . ..|.-++ .. --...+-+++|+++|++.||+|..|-
T Consensus 17 ~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 17 VAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred HHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEec
Confidence 67899999999999999999987431 100 0 0010010 00 12456779999999999999999995
No 216
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=82.06 E-value=11 Score=31.84 Aligned_cols=115 Identities=8% Similarity=0.010 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCCCC-CCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcc
Q psy13372 83 ESEFRASLEKTIQYACALNIPAIHIMSGKT-ESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYY 161 (273)
Q Consensus 83 ~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~ 161 (273)
.....+.+.+.++.|..+|++++++..-.. +..++ +......++-+.+.+.+..+...+.||++-+-- ..
T Consensus 40 H~~G~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~-~~Ev~~lm~L~~~~l~~~~~~~~~~~iri~~iG--------~~ 110 (243)
T PRK14829 40 HKAGEPVLFDVVAGAIEAGVPYLSLYTFSTENWKRS-PDEVRFLMGFSRDVIHRRREQMDEWGVRVRWSG--------RR 110 (243)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhCCC-HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEe--------ch
Confidence 345567899999999999999999965432 22221 000112233444556666666778899876542 11
Q ss_pred cCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhc
Q psy13372 162 LSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGAC 206 (273)
Q Consensus 162 ~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~ 206 (273)
-.-+++..+.++++++....+=++++.++-.+-...++.++++.+
T Consensus 111 ~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Y~gr~EI~~A~~~~ 155 (243)
T PRK14829 111 PRLWKSVIDELEAAEELTKNNTTMDLVFCVNYGGRAEIADAAAAI 155 (243)
T ss_pred hhCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHH
Confidence 112333344443324443344455555544433333455555544
No 217
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=81.84 E-value=32 Score=29.44 Aligned_cols=80 Identities=14% Similarity=0.128 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCC---CCCHHHHHHHHH-HcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPV---GVTLEQLVAAQT-RHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYA 97 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~---~~~~~~~~~~l~-~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 97 (273)
.+.+.++.++++|-+.|.+..... ....-++.+.+. +.|+++..+-+-.+ . ....++..+..+
T Consensus 16 ~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~----~---------n~~~l~~~L~~~ 82 (272)
T TIGR00676 16 NLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCIG----A---------TREEIREILREY 82 (272)
T ss_pred HHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecC----C---------CHHHHHHHHHHH
Confidence 466778888999999999986422 112234444454 77999876532110 1 134677788888
Q ss_pred HHcCCCeEEecCCCCCC
Q psy13372 98 CALNIPAIHIMSGKTES 114 (273)
Q Consensus 98 ~~lG~~~i~~~~G~~~~ 114 (273)
..+|++.+.+..|..+.
T Consensus 83 ~~~Gi~nvL~l~GD~~~ 99 (272)
T TIGR00676 83 RELGIRHILALRGDPPK 99 (272)
T ss_pred HHCCCCEEEEeCCCCCC
Confidence 99999999988887754
No 218
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=81.61 E-value=16 Score=32.58 Aligned_cols=111 Identities=8% Similarity=0.070 Sum_probs=63.2
Q ss_pred HHHHHHHHHcCCCeEEecCCCC--------CCC-------HHHHHHHHHHcCCeeEE-EecCCccccCCCCCchhHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFPPV--------GVT-------LEQLVAAQTRHGLKQVL-INTEVDENFGYAAVKGKESEFR 87 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~--------~~~-------~~~~~~~l~~~gL~i~~-~~~~~~~~~~~~~~~~~~~~~~ 87 (273)
.+=++.+.+.|.+.|.+..+-. ..+ ..++.+..+++|+.+.. +..-.+... ... ...
T Consensus 124 ~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~-----~~r--~~~ 196 (347)
T PLN02746 124 LKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI-----EGP--VPP 196 (347)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc-----cCC--CCH
Confidence 4556777788999988885411 111 24566677899999852 221111111 100 124
Q ss_pred HHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCC-cEEEEccCCC
Q psy13372 88 ASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHS-LTALIEPVNQ 154 (273)
Q Consensus 88 ~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~g-v~i~lE~~~~ 154 (273)
+.+.+.++.+..+|+..|.+.-. .+.. .+.....+++.+++ ..+ +.|.++.|+.
T Consensus 197 ~~l~~~~~~~~~~Gad~I~l~DT-~G~a------~P~~v~~lv~~l~~------~~~~~~i~~H~Hnd 251 (347)
T PLN02746 197 SKVAYVAKELYDMGCYEISLGDT-IGVG------TPGTVVPMLEAVMA------VVPVDKLAVHFHDT 251 (347)
T ss_pred HHHHHHHHHHHHcCCCEEEecCC-cCCc------CHHHHHHHHHHHHH------hCCCCeEEEEECCC
Confidence 67778888888999999988421 1111 33444555555543 234 4678877653
No 219
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=81.58 E-value=27 Score=31.02 Aligned_cols=107 Identities=12% Similarity=0.067 Sum_probs=65.1
Q ss_pred HHHHHHHHcCCCeEEecCCCC-CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCCC
Q psy13372 25 DKYRVAAELGFRYIESWFPPV-GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIP 103 (273)
Q Consensus 25 ~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~ 103 (273)
+-++.+.+.|.+.|-+..... .....+..+.+++.|+++...-.... . .+ .+.+.+.++.+..+|+.
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~----~-~~-------~e~l~~~a~~~~~~Ga~ 159 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSH----M-AP-------PEKLAEQAKLMESYGAQ 159 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEecc----C-CC-------HHHHHHHHHHHHhCCCC
Confidence 457888899999988775422 12346677788899998875332211 1 11 25677778888899999
Q ss_pred eEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 104 AIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 104 ~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
.|.+.- ..+.. .+......++.+++ ... -++.+.++.|++
T Consensus 160 ~i~i~D-T~G~~------~P~~v~~~v~~l~~---~l~-~~i~ig~H~Hnn 199 (337)
T PRK08195 160 CVYVVD-SAGAL------LPEDVRDRVRALRA---ALK-PDTQVGFHGHNN 199 (337)
T ss_pred EEEeCC-CCCCC------CHHHHHHHHHHHHH---hcC-CCCeEEEEeCCC
Confidence 988742 11111 33334444444443 211 258899988764
No 220
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=81.48 E-value=16 Score=31.11 Aligned_cols=153 Identities=12% Similarity=0.117 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHcCCCeEEecC-C---CC--C-----------CCHHHHHHHHHHcCCeeE-EEecCCccccCCCCCc-hh
Q psy13372 22 NYLDKYRVAAELGFRYIESWF-P---PV--G-----------VTLEQLVAAQTRHGLKQV-LINTEVDENFGYAAVK-GK 82 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~-~---~~--~-----------~~~~~~~~~l~~~gL~i~-~~~~~~~~~~~~~~~~-~~ 82 (273)
...+.++..+++|=.++=+.. | +. . ..++....+-++.+++.. .+++... ....-... ..
T Consensus 20 g~~ea~~~F~rAGGt~~il~nlps~~~g~~~~~~edy~r~yd~~lr~ve~~r~e~~~~~~~vvGvHPa-E~~~l~e~~~~ 98 (285)
T COG1831 20 GALEAARRFHRAGGTHLILVNLPSWSYGIAPTGGEDYRRLYDIHLRLVEKIREEGPVEAYAVVGVHPA-EVSRLAEAGRS 98 (285)
T ss_pred cHHHHHHHHHHcCCcEEEEeecccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCceeEEEeccCHH-HHHHHHHhccC
Confidence 578999999999988887763 2 11 0 112223333334445433 3333211 11000011 11
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCccc
Q psy13372 83 ESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYL 162 (273)
Q Consensus 83 ~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~ 162 (273)
.++.++..+..+++|+++-...-.+..|..+..-- |. ++..|+..-+-|..+.++|++.|..+.|++-+ .-.
T Consensus 99 peea~e~m~~~lelA~k~v~eg~avaiGEvGrPHy-pV-s~~v~~~~n~vl~~a~elA~dvdc~vqLHtes------~~~ 170 (285)
T COG1831 99 PEEALEEMRHALELAAKLVEEGKAVAIGEVGRPHY-PV-SEEVWEASNEVLEYAMELAKDVDCAVQLHTES------LDE 170 (285)
T ss_pred hHHHHHHHHHHHHHHHHHHhccceeeeeccCCCCC-CC-CHHHHHHHHHHHHHHHHHhhcCCCcEEEecCC------CCh
Confidence 25677888899999988765554444444322100 22 67889999999999999999999888888733 224
Q ss_pred CCHHHHHHHHHHHhhcCCCceeEe
Q psy13372 163 SSFRVAERLIRELRAHGISNVQLQ 186 (273)
Q Consensus 163 ~~~~~~~~li~~~~~~~~~~~g~~ 186 (273)
.+.++..++. +.++-....+.
T Consensus 171 ~~~~~i~~~a---k~~G~~~~~VV 191 (285)
T COG1831 171 ETYEEIAEMA---KEAGIKPYRVV 191 (285)
T ss_pred HHHHHHHHHH---HHhCCCcceeE
Confidence 4566777777 77764333433
No 221
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=81.47 E-value=5.6 Score=33.92 Aligned_cols=69 Identities=12% Similarity=0.079 Sum_probs=50.1
Q ss_pred cCHHHHHHHHHHcCCCeEEecCC---------CC--CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHH
Q psy13372 21 ANYLDKYRVAAELGFRYIESWFP---------PV--GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRAS 89 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~~---------~~--~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (273)
+++++.++.+++.|++.|-+.-- .| ..+.+.++..+++.|+++.+.. .|+...|+.++-.++.
T Consensus 183 P~~~~vi~~L~~~g~k~V~L~PlMlVAGdHa~nDmaGde~dSWks~L~~~G~~v~~~l------~GLGE~~~i~~ifi~h 256 (262)
T PF06180_consen 183 PSLEDVIARLKKKGIKKVHLIPLMLVAGDHAKNDMAGDEEDSWKSRLEAAGFEVTCVL------KGLGEYPAIQQIFIEH 256 (262)
T ss_dssp SBHHHHHHHHHHHT-SEEEEEEESSS--HHHHCCCCSSSTTSHHHHHHHTT-EEEE----------GGGSHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCeEEEEecccccchhhhhhhcCCCcchHHHHHHHCCCEEEEEe------ccCcCCHHHHHHHHHH
Confidence 48999999999999999988720 11 2356789999999999987642 2344678899999998
Q ss_pred HHHHHH
Q psy13372 90 LEKTIQ 95 (273)
Q Consensus 90 ~~~~i~ 95 (273)
++++++
T Consensus 257 l~~ai~ 262 (262)
T PF06180_consen 257 LKEAIE 262 (262)
T ss_dssp HHHHH-
T ss_pred HHHHhC
Confidence 888764
No 222
>PRK12999 pyruvate carboxylase; Reviewed
Probab=81.36 E-value=20 Score=37.30 Aligned_cols=121 Identities=11% Similarity=-0.017 Sum_probs=71.4
Q ss_pred ccccccccCH-HHHHHHHHHcCCCeEEecCCCC-CCCHHHHHHHHHHcCCeeE-EEecCCccccCCCCCchhHHHHHHHH
Q psy13372 14 LLFNDLAANY-LDKYRVAAELGFRYIESWFPPV-GVTLEQLVAAQTRHGLKQV-LINTEVDENFGYAAVKGKESEFRASL 90 (273)
Q Consensus 14 ~~~~~~~~~~-~~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~l~~~gL~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (273)
..|.+++.+. .+.++.+++.|.|.+-+.-+.. -...+...+.+++.|.... +++.. ++. .|+.......+++
T Consensus 619 vgy~~yp~~v~~~~i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~yt--g~~---~d~~~~~~~~~~~ 693 (1146)
T PRK12999 619 VGYTNYPDNVVRAFVREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYT--GDI---LDPARAKYDLDYY 693 (1146)
T ss_pred ccccCCCchHHHHHHHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEE--ecC---CCCCCCCCCHHHH
Confidence 3444443344 4459999999999998875422 1234555566777786432 23321 111 1121111235788
Q ss_pred HHHHHHHHHcCCCeEEec--CCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 91 EKTIQYACALNIPAIHIM--SGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 91 ~~~i~~a~~lG~~~i~~~--~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
...++.+..+|+..|.+. .|.. .+.....+++.|++ +.++.|.++.|+.
T Consensus 694 ~~~a~~l~~~Ga~~i~ikDt~G~l---------~P~~~~~lv~~lk~------~~~ipi~~H~Hnt 744 (1146)
T PRK12999 694 VDLAKELEKAGAHILAIKDMAGLL---------KPAAAYELVSALKE------EVDLPIHLHTHDT 744 (1146)
T ss_pred HHHHHHHHHcCCCEEEECCccCCC---------CHHHHHHHHHHHHH------HcCCeEEEEeCCC
Confidence 888888899999999884 2332 34455666666664 3368888888653
No 223
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=81.32 E-value=12 Score=31.58 Aligned_cols=111 Identities=14% Similarity=0.041 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCCCC-CCCCCCCCCCcchH----HHHHHHHHHHHHHHhhCCcEEEEccCCCCCC
Q psy13372 83 ESEFRASLEKTIQYACALNIPAIHIMSGKT-ESSRTQPIASEDPY----TTLKENLIYACAELERHSLTALIEPVNQHSV 157 (273)
Q Consensus 83 ~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~~~~~~~~~~~~----~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~ 157 (273)
.....+.+...++.|..+|++.+++..-.. +..+ ++... +-+.+.+.+..+...+.||+|-+=-
T Consensus 40 H~~G~~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R-----~~~EV~~Lm~L~~~~l~~~~~~~~~~~iri~viG------ 108 (249)
T PRK14834 40 HRAGVEALRRVVRAAGELGIGYLTLFAFSSENWSR-----PASEVSDLFGLLRLFIRRDLAELHRNGVRVRVIG------ 108 (249)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEEeccccCC-----CHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEc------
Confidence 345578899999999999999999865433 2222 22333 3344556666667778898876432
Q ss_pred CCcccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhc
Q psy13372 158 PGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGAC 206 (273)
Q Consensus 158 ~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~ 206 (273)
..-.-+++..+.+++.+.....+=++++.++-.+-...++.++++.+
T Consensus 109 --d~~~Lp~~l~~~i~~~e~~T~~~~~~~lnla~~Yggr~EI~~A~k~~ 155 (249)
T PRK14834 109 --ERAGLEADICALLNEAEELTRNNTGLNLVIAFNYGSRDEIARAVRRL 155 (249)
T ss_pred --ChhhCCHHHHHHHHHHHHhhccCCceEEEEEeccCCHHHHHHHHHHH
Confidence 11112334444443335554555556665544433333455555554
No 224
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=81.19 E-value=29 Score=28.51 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHcCCCeEEecC--C--------CC---CCCHH---HHHHHHH-HcCCeeEEEecCCccccCCCCCchhHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWF--P--------PV---GVTLE---QLVAAQT-RHGLKQVLINTEVDENFGYAAVKGKES 84 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~--~--------~~---~~~~~---~~~~~l~-~~gL~i~~~~~~~~~~~~~~~~~~~~~ 84 (273)
++.++.+.+++.|||+||++. | ++ ....+ ++.+.++ ..++.+.. -. ..+. +++
T Consensus 68 ~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~v-k~----r~~~--~~~--- 137 (231)
T cd02801 68 TLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTV-KI----RLGW--DDE--- 137 (231)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEE-EE----eecc--CCc---
Confidence 567788888889999999985 2 11 11333 2222332 33322221 11 1111 111
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCC
Q psy13372 85 EFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSS 164 (273)
Q Consensus 85 ~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~ 164 (273)
+.....++.....|+..+.++.+....... ....++. +++ +.+..++.+..= .-+.+
T Consensus 138 ---~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~----~~~~~~~----~~~---i~~~~~ipvi~~---------Ggi~~ 194 (231)
T cd02801 138 ---EETLELAKALEDAGASALTVHGRTREQRYS----GPADWDY----IAE---IKEAVSIPVIAN---------GDIFS 194 (231)
T ss_pred ---hHHHHHHHHHHHhCCCEEEECCCCHHHcCC----CCCCHHH----HHH---HHhCCCCeEEEe---------CCCCC
Confidence 345566677777899999998654321100 1122322 222 222445554431 13678
Q ss_pred HHHHHHHH
Q psy13372 165 FRVAERLI 172 (273)
Q Consensus 165 ~~~~~~li 172 (273)
++++.+++
T Consensus 195 ~~d~~~~l 202 (231)
T cd02801 195 LEDALRCL 202 (231)
T ss_pred HHHHHHHH
Confidence 99999998
No 225
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=81.11 E-value=36 Score=29.50 Aligned_cols=72 Identities=7% Similarity=0.011 Sum_probs=53.8
Q ss_pred CcchHHHHHHHHHHHHHHHhhCCcEEEEcc--CCCCC----C---CCcccCCHHHHHHHHHHHhhcCCCceeEeeecccc
Q psy13372 122 SEDPYTTLKENLIYACAELERHSLTALIEP--VNQHS----V---PGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNA 192 (273)
Q Consensus 122 ~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~--~~~~~----~---~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~ 192 (273)
+...++.-++..++++++|+++||.+--|- +.... . ...+.++++++.+++ ++.+-..+.+.+-+.|-
T Consensus 105 S~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv---~~TgvD~LAvaiGt~HG 181 (287)
T PF01116_consen 105 SALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFV---EETGVDALAVAIGTAHG 181 (287)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHH---HHHTTSEEEE-SSSBSS
T ss_pred CcCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHH---HHhCCCEEEEecCcccc
Confidence 344578889999999999999998877764 22110 0 134678999999999 99988889999999998
Q ss_pred cccC
Q psy13372 193 QRIC 196 (273)
Q Consensus 193 ~~~~ 196 (273)
.+.+
T Consensus 182 ~y~~ 185 (287)
T PF01116_consen 182 MYKG 185 (287)
T ss_dssp SBSS
T ss_pred ccCC
Confidence 7765
No 226
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=81.09 E-value=33 Score=29.71 Aligned_cols=142 Identities=9% Similarity=0.004 Sum_probs=78.3
Q ss_pred cCHHHHHHHHHHcCCCeEEecCC---CC--CCCHHHHHHHHHHcCCeeEE-EecCCccccCCCCCchhHHHHHHHHHHHH
Q psy13372 21 ANYLDKYRVAAELGFRYIESWFP---PV--GVTLEQLVAAQTRHGLKQVL-INTEVDENFGYAAVKGKESEFRASLEKTI 94 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~~---~~--~~~~~~~~~~l~~~gL~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (273)
.+++ .+..+-++||+.|.+... ++ -...+++.+....+|+.+-. ++.-.+...+. ... ......-..+.
T Consensus 88 ~~~e-~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~-~~~---~~~yT~peeA~ 162 (285)
T PRK07709 88 SSFE-KCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDV-IAE---GVIYADPAECK 162 (285)
T ss_pred CCHH-HHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCc-ccc---cccCCCHHHHH
Confidence 3544 455667899999999975 32 01247888889999998874 43321111110 000 11123445677
Q ss_pred HHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHH
Q psy13372 95 QYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRE 174 (273)
Q Consensus 95 ~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~ 174 (273)
++.++.|+..+-+-.|..=.....+ +.-.+ +.|++ +.+..++.+.|+--+ ..+.++..+.+
T Consensus 163 ~Fv~~TgvD~LAvaiGt~HG~Y~~~--p~L~~----~~L~~---I~~~~~iPLVLHGgS--------G~~~e~~~~ai-- 223 (285)
T PRK07709 163 HLVEATGIDCLAPALGSVHGPYKGE--PNLGF----AEMEQ---VRDFTGVPLVLHGGT--------GIPTADIEKAI-- 223 (285)
T ss_pred HHHHHhCCCEEEEeecccccCcCCC--CccCH----HHHHH---HHHHHCCCEEEeCCC--------CCCHHHHHHHH--
Confidence 7788889999877666541111000 22223 33444 344568999988522 23345555555
Q ss_pred HhhcCCCceeEeeecc
Q psy13372 175 LRAHGISNVQLQFDFF 190 (273)
Q Consensus 175 ~~~~~~~~~g~~~D~~ 190 (273)
+ . --.+++++|-
T Consensus 224 -~-~--Gi~KiNi~T~ 235 (285)
T PRK07709 224 -S-L--GTSKINVNTE 235 (285)
T ss_pred -H-c--CCeEEEeChH
Confidence 2 2 3467777763
No 227
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=81.07 E-value=22 Score=27.04 Aligned_cols=107 Identities=11% Similarity=0.112 Sum_probs=68.2
Q ss_pred HHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCCCeEE
Q psy13372 27 YRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIPAIH 106 (273)
Q Consensus 27 l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~ 106 (273)
...++..||+.|-+-.. .+++++.+.+.+.+-.+..++.... . ....++..++..++.|.+.+.
T Consensus 24 ~~~lr~~G~eVi~LG~~---vp~e~i~~~a~~~~~d~V~lS~~~~------~-------~~~~~~~~~~~L~~~~~~~~~ 87 (137)
T PRK02261 24 DRALTEAGFEVINLGVM---TSQEEFIDAAIETDADAILVSSLYG------H-------GEIDCRGLREKCIEAGLGDIL 87 (137)
T ss_pred HHHHHHCCCEEEECCCC---CCHHHHHHHHHHcCCCEEEEcCccc------c-------CHHHHHHHHHHHHhcCCCCCe
Confidence 44667889999988533 5689999999999999988754311 1 134566677777788776666
Q ss_pred ecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHH
Q psy13372 107 IMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLI 172 (273)
Q Consensus 107 ~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li 172 (273)
+..|+.... .+..++.. .+.+++.|+.-++.+ ..+.++....+
T Consensus 88 i~vGG~~~~------~~~~~~~~-------~~~l~~~G~~~vf~~----------~~~~~~i~~~l 130 (137)
T PRK02261 88 LYVGGNLVV------GKHDFEEV-------EKKFKEMGFDRVFPP----------GTDPEEAIDDL 130 (137)
T ss_pred EEEECCCCC------CccChHHH-------HHHHHHcCCCEEECc----------CCCHHHHHHHH
Confidence 555554221 12223333 345566888877775 23566666666
No 228
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=80.96 E-value=42 Score=30.18 Aligned_cols=26 Identities=12% Similarity=0.051 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHcC-CCeEEecCCCC
Q psy13372 87 RASLEKTIQYACALN-IPAIHIMSGKT 112 (273)
Q Consensus 87 ~~~~~~~i~~a~~lG-~~~i~~~~G~~ 112 (273)
.+.....++..+..| +.++.+..|..
T Consensus 236 ~~e~~~la~~L~~~G~~d~i~vs~~~~ 262 (363)
T COG1902 236 IEEAVELAKALEEAGLVDYIHVSEGGY 262 (363)
T ss_pred HHHHHHHHHHHHhcCCccEEEeecccc
Confidence 456667778888899 79999877655
No 229
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=80.88 E-value=29 Score=28.34 Aligned_cols=147 Identities=14% Similarity=0.093 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN 101 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG 101 (273)
...+..+.+.+.|++.||+.+... ...+.++++.++++ ++. ++. +-. + ++ ..++.|...|
T Consensus 17 ~a~~ia~al~~gGi~~iEit~~tp-~a~~~I~~l~~~~~-~~~-vGA---GTV-l--~~-----------e~a~~ai~aG 76 (201)
T PRK06015 17 HAVPLARALAAGGLPAIEITLRTP-AALDAIRAVAAEVE-EAI-VGA---GTI-L--NA-----------KQFEDAAKAG 76 (201)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCc-cHHHHHHHHHHHCC-CCE-Eee---EeC-c--CH-----------HHHHHHHHcC
Confidence 445667788899999999998743 45566766666664 221 211 111 1 22 2345567799
Q ss_pred CCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCCC
Q psy13372 102 IPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGIS 181 (273)
Q Consensus 102 ~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 181 (273)
+++++.+. . + .++.+.++++||... |+. -|+-|+.... +.+..
T Consensus 77 A~FivSP~--~--~------------------~~vi~~a~~~~i~~i---------PG~--~TptEi~~A~----~~Ga~ 119 (201)
T PRK06015 77 SRFIVSPG--T--T------------------QELLAAANDSDVPLL---------PGA--ATPSEVMALR----EEGYT 119 (201)
T ss_pred CCEEECCC--C--C------------------HHHHHHHHHcCCCEe---------CCC--CCHHHHHHHH----HCCCC
Confidence 99998742 1 1 146788889999877 453 4666766666 34445
Q ss_pred ceeEeeeccccccc-CCChHHHHHhcCCcceeEEeccCCCCCCCCCCCcccHHHHHHHHHH
Q psy13372 182 NVQLQFDFFNAQRI-CGDLTHTFGACRDLIGHVQIAQAPDRQEPHARGEIDYAYVFELLAR 241 (273)
Q Consensus 182 ~~g~~~D~~h~~~~-~~~~~~~i~~~~~~i~~vHi~d~~~~~~~g~~G~id~~~i~~~L~~ 241 (273)
-+++- ..... |.+..+.++...+.+..+ = + |-++...+-+.|+.
T Consensus 120 ~vK~F----Pa~~~GG~~yikal~~plp~~~l~---p--------t-GGV~~~n~~~~l~a 164 (201)
T PRK06015 120 VLKFF----PAEQAGGAAFLKALSSPLAGTFFC---P--------T-GGISLKNARDYLSL 164 (201)
T ss_pred EEEEC----CchhhCCHHHHHHHHhhCCCCcEE---e--------c-CCCCHHHHHHHHhC
Confidence 55553 34333 334444444444433322 1 2 77888888888875
No 230
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=80.86 E-value=32 Score=35.89 Aligned_cols=126 Identities=10% Similarity=-0.049 Sum_probs=77.1
Q ss_pred cccccccccccccC-HHHHHHHHHHcCCCeEEecCCC-CCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHH
Q psy13372 9 AANLTLLFNDLAAN-YLDKYRVAAELGFRYIESWFPP-VGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEF 86 (273)
Q Consensus 9 ~~~~~~~~~~~~~~-~~~~l~~~~~~G~~~vEl~~~~-~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~ 86 (273)
|.|. ..|.+++.+ ....++.+++.|.|-+-+.-.. +-...+.-.+.++++|..+...-++.+ +. .++......
T Consensus 613 g~n~-vgy~~ypd~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~-~~---~d~~~~~~~ 687 (1143)
T TIGR01235 613 GANG-VGYTNYPDNVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTG-DI---LDPARPKYD 687 (1143)
T ss_pred cccc-cCccCCCHHHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEec-cC---CCcCCCCCC
Confidence 5555 455555334 4555778899999999886432 223456666778889987653222221 11 122221223
Q ss_pred HHHHHHHHHHHHHcCCCeEEec--CCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 87 RASLEKTIQYACALNIPAIHIM--SGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 87 ~~~~~~~i~~a~~lG~~~i~~~--~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
++++.+.++.+..+|+..|.+. .|.. .+.....+++.|++ ..++.|.++.|+.
T Consensus 688 l~y~~~~ak~l~~~Gad~I~ikDt~Gll---------~P~~~~~Lv~~lk~------~~~~pi~~H~Hdt 742 (1143)
T TIGR01235 688 LKYYTNLAVELEKAGAHILGIKDMAGLL---------KPAAAKLLIKALRE------KTDLPIHFHTHDT 742 (1143)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCCc---------CHHHHHHHHHHHHH------hcCCeEEEEECCC
Confidence 6788888888999999999884 2332 34455666666654 2368888888653
No 231
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=80.76 E-value=37 Score=29.43 Aligned_cols=146 Identities=8% Similarity=0.041 Sum_probs=76.2
Q ss_pred HHHHHHHHHcCCCeEEecCCC-C-CCC---HHHHHHHHHHcCCeeEE-EecCCccccCCCCCchhHHHHHHHHHHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFPP-V-GVT---LEQLVAAQTRHGLKQVL-INTEVDENFGYAAVKGKESEFRASLEKTIQYA 97 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~-~-~~~---~~~~~~~l~~~gL~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 97 (273)
.+.+..+-+.||+.|.+.... + +.. .+++.+..+.+|+.+-. ++.-.+.+.+... .+..+.....-..+.++.
T Consensus 86 ~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~-~~~~~~~~TdP~~a~~Fv 164 (287)
T PF01116_consen 86 FEDIKRAIDAGFTSVMIDGSALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIES-EEETESLYTDPEEAKEFV 164 (287)
T ss_dssp HHHHHHHHHHTSSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSS-STT-TTCSSSHHHHHHHH
T ss_pred HHHHHHHHHhCcccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccc-cccccccccCHHHHHHHH
Confidence 566667778899999999752 1 122 47888889999998874 4332211111111 111122223345677778
Q ss_pred HHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhh
Q psy13372 98 CALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRA 177 (273)
Q Consensus 98 ~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~ 177 (273)
++.|+..+-+-.|..=.....+..+.-. .+.|+++.+... ++.++++--+ ..+.++..+.+ +
T Consensus 165 ~~TgvD~LAvaiGt~HG~y~~~~~p~Ld----~~~L~~I~~~~~--~iPLVlHGgS--------G~~~e~~~~ai---~- 226 (287)
T PF01116_consen 165 EETGVDALAVAIGTAHGMYKGGKKPKLD----FDRLKEIREAVP--DIPLVLHGGS--------GLPDEQIRKAI---K- 226 (287)
T ss_dssp HHHTTSEEEE-SSSBSSSBSSSSSTC------HHHHHHHHHHHH--TSEEEESSCT--------TS-HHHHHHHH---H-
T ss_pred HHhCCCEEEEecCccccccCCCCCcccC----HHHHHHHHHhcC--CCCEEEECCC--------CCCHHHHHHHH---H-
Confidence 8889999988777541110000002222 233434333333 8999998521 22344545555 3
Q ss_pred cCCCceeEeeecc
Q psy13372 178 HGISNVQLQFDFF 190 (273)
Q Consensus 178 ~~~~~~g~~~D~~ 190 (273)
. --.+++++|.
T Consensus 227 ~--Gi~KiNi~T~ 237 (287)
T PF01116_consen 227 N--GISKINIGTE 237 (287)
T ss_dssp T--TEEEEEESHH
T ss_pred c--CceEEEEehH
Confidence 2 3467788774
No 232
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=80.62 E-value=27 Score=28.18 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHcCCCeEEecC------CCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWF------PPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQ 95 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~------~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (273)
.+.+.++.+.+.|.|.||+.. +.-....+.++++.+.....+. +++.. .++ .+.++
T Consensus 12 ~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~-v~lm~-------~~~----------~~~~~ 73 (210)
T TIGR01163 12 RLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPID-VHLMV-------ENP----------DRYIE 73 (210)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEE-EEeee-------CCH----------HHHHH
Confidence 578899999999999999962 2112445666666554455544 32211 111 23478
Q ss_pred HHHHcCCCeEEecCC
Q psy13372 96 YACALNIPAIHIMSG 110 (273)
Q Consensus 96 ~a~~lG~~~i~~~~G 110 (273)
.+...|+..+.+|.+
T Consensus 74 ~~~~~gadgv~vh~~ 88 (210)
T TIGR01163 74 DFAEAGADIITVHPE 88 (210)
T ss_pred HHHHcCCCEEEEccC
Confidence 888999999999853
No 233
>PLN02537 diaminopimelate decarboxylase
Probab=80.52 E-value=38 Score=30.83 Aligned_cols=94 Identities=16% Similarity=0.074 Sum_probs=52.8
Q ss_pred HHHHHHHHc--CCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCC--CeEEecCCCCCCCCCCCCCCcchH
Q psy13372 51 QLVAAQTRH--GLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNI--PAIHIMSGKTESSRTQPIASEDPY 126 (273)
Q Consensus 51 ~~~~~l~~~--gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~--~~i~~~~G~~~~~~~~~~~~~~~~ 126 (273)
++.+.+++. +|.+..+++..+.. ..+++...+..+.+.+.++.+.+.|. +.+.+..| ++.....+......+
T Consensus 170 ~~~~~~~~~~~~l~l~Glh~H~gs~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~idiGGG-f~v~y~~~~~~~~~~ 245 (410)
T PLN02537 170 WFLDAVKAHPNELKLVGAHCHLGST---ITKVDIFRDAAVLMVNYVDEIRAQGFELSYLNIGGG-LGIDYYHAGAVLPTP 245 (410)
T ss_pred HHHHHHHhCCCCCcEEEEEeccCCC---CCchHHHHHHHHHHHHHHHHHHHcCCCccEEEcCCC-ccccCCCCCCCCCCH
Confidence 444455565 78998888765421 12455555556666666666666664 45666433 433211000011245
Q ss_pred HHHHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 127 TTLKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 127 ~~~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
+.+.+.+++..+ +.++++.+||
T Consensus 246 ~~~~~~i~~~~~---~~~~~li~EP 267 (410)
T PLN02537 246 RDLIDTVRELVL---SRDLTLIIEP 267 (410)
T ss_pred HHHHHHHHHHHH---hcCCEEEEcc
Confidence 666666666554 5789999998
No 234
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=80.50 E-value=10 Score=33.14 Aligned_cols=55 Identities=9% Similarity=0.004 Sum_probs=42.8
Q ss_pred HHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 94 IQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 94 i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
.+..+++|+..+.+...+.+.+ +++.-++-...++++.+.+++.++.+.||++..
T Consensus 112 ~~rike~GadavK~Llyy~pD~------~~ein~~k~a~vervg~ec~a~dipf~lE~ltY 166 (325)
T TIGR01232 112 AKRLKEQGANAVKFLLYYDVDD------AEEINIQKKAYIERIGSECVAEDIPFFLEVLTY 166 (325)
T ss_pred HHHHHHhCCCeEEEEEEeCCCC------ChHHHHHHHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 4445789999998876555333 455566677889999999999999999999765
No 235
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=80.47 E-value=65 Score=32.09 Aligned_cols=136 Identities=15% Similarity=0.109 Sum_probs=0.0
Q ss_pred cCHHHHHHHHHHcCCCeEEecC-------------------CCCCCCHH-------HHHHHHHH---cCCeeEE-EecCC
Q psy13372 21 ANYLDKYRVAAELGFRYIESWF-------------------PPVGVTLE-------QLVAAQTR---HGLKQVL-INTEV 70 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~-------------------~~~~~~~~-------~~~~~l~~---~gL~i~~-~~~~~ 70 (273)
..+.++.+.+++.|||+|||+. .|+ .+.+ ++.+.+++ .++.|.. ++...
T Consensus 551 ~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yG-GslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~ 629 (765)
T PRK08255 551 DDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYG-GSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHD 629 (765)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCC-CCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEcccc
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEc
Q psy13372 71 DENFGYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIE 150 (273)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE 150 (273)
....|.+ .+.....++.....|+..|.++.|.......... .......+.+.+++.+ ++.+..-
T Consensus 630 ~~~~g~~---------~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~-~~~~~~~~~~~ik~~~------~~pv~~~ 693 (765)
T PRK08255 630 WVEGGNT---------PDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVY-GRMYQTPFADRIRNEA------GIATIAV 693 (765)
T ss_pred ccCCCCC---------HHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCc-CccccHHHHHHHHHHc------CCEEEEe
Q ss_pred cCCCCCCCCcccCCHHHHHHHHHHHhhcCCCceeE
Q psy13372 151 PVNQHSVPGYYLSSFRVAERLIRELRAHGISNVQL 185 (273)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~g~ 185 (273)
. -+.+++++.+++ ++-.-.-+++
T Consensus 694 G---------~i~~~~~a~~~l---~~g~~D~v~~ 716 (765)
T PRK08255 694 G---------AISEADHVNSII---AAGRADLCAL 716 (765)
T ss_pred C---------CCCCHHHHHHHH---HcCCcceeeE
No 236
>PLN02623 pyruvate kinase
Probab=80.46 E-value=36 Score=32.54 Aligned_cols=101 Identities=9% Similarity=0.039 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN 101 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG 101 (273)
+.++ ++++.+.|+|.|-+.|-....++.++++.+++.|-.+..+.- . | ...+++++...++ |
T Consensus 280 D~~d-i~f~~~~~vD~ialSFVr~a~DV~~~r~~l~~~~~~~~iiak-------I----E-t~eaVeNldeIl~-----g 341 (581)
T PLN02623 280 DWED-IKFGVENKVDFYAVSFVKDAQVVHELKDYLKSCNADIHVIVK-------I----E-SADSIPNLHSIIT-----A 341 (581)
T ss_pred HHHH-HHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCcceEEEE-------E----C-CHHHHHhHHHHHH-----h
Confidence 3444 789999999999999875546889999999988765443321 0 1 1234566666655 7
Q ss_pred CCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEE
Q psy13372 102 IPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTAL 148 (273)
Q Consensus 102 ~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~ 148 (273)
+..+-+.+|..+... ..+.+....+++...++++|..+.
T Consensus 342 ~DgImIgrgDLgvel--------g~~~v~~~qk~Ii~~~~~~gKpvi 380 (581)
T PLN02623 342 SDGAMVARGDLGAEL--------PIEEVPLLQEEIIRRCRSMGKPVI 380 (581)
T ss_pred CCEEEECcchhhhhc--------CcHHHHHHHHHHHHHHHHhCCCEE
Confidence 888888777775442 235666677888888888887766
No 237
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=80.46 E-value=12 Score=31.62 Aligned_cols=115 Identities=12% Similarity=-0.013 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCCCC-CCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcc
Q psy13372 83 ESEFRASLEKTIQYACALNIPAIHIMSGKT-ESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYY 161 (273)
Q Consensus 83 ~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~ 161 (273)
.....+.++..++.|.++|++++++..-.. +..++ +......++-+.+.+.+..+...+.||++-+--- ...+
T Consensus 46 H~~G~~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~-~~Ev~~Lm~L~~~~l~~~~~~~~~~~iri~~iG~-----~~~L 119 (249)
T PRK14831 46 HRRGVDALKDLLRCCKDWGIGALTAYAFSTENWSRP-LEEVNFLMTLFERVLRRELEELMEENVRIRFVGD-----LDPL 119 (249)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeecchhhhCcC-HHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEec-----hhhC
Confidence 345567899999999999999999975432 22221 0001122444556666667778889998765521 1122
Q ss_pred cCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhc
Q psy13372 162 LSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGAC 206 (273)
Q Consensus 162 ~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~ 206 (273)
++...+.+++.+.....+=++++.++-.+-...++.++++.+
T Consensus 120 ---p~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EIv~A~~~l 161 (249)
T PRK14831 120 ---PKSLQEEISRSTELTKNNNGIHFNVCTNYGGRQEIVQAARAI 161 (249)
T ss_pred ---CHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHH
Confidence 233344442224443344445555444433333455555554
No 238
>PRK13753 dihydropteroate synthase; Provisional
Probab=80.30 E-value=38 Score=29.24 Aligned_cols=80 Identities=10% Similarity=0.164 Sum_probs=55.4
Q ss_pred HHHHHHHHcCCCeEEecCCC-CC--CCCCCCCCCcchHHHHHHHHHHHHHHHhhCCc---EEEEccCCCCCCCCcc--cC
Q psy13372 92 KTIQYACALNIPAIHIMSGK-TE--SSRTQPIASEDPYTTLKENLIYACAELERHSL---TALIEPVNQHSVPGYY--LS 163 (273)
Q Consensus 92 ~~i~~a~~lG~~~i~~~~G~-~~--~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv---~i~lE~~~~~~~~~~~--~~ 163 (273)
..++.++..+++.|.+|.-. .+ .... ...++.....+.+.|.+-.+.+.+.|| +|.+-|= .+ | ..
T Consensus 110 ~~~~vva~~~~~vVlmH~~~~~~~~~~~~-~~~~~dv~~ev~~~l~~~i~~~~~~Gi~~~~IilDPG-----iG-F~k~k 182 (279)
T PRK13753 110 ALYPDIAEADCRLVVMHSAQRDGIATRTG-HLRPEDALDEIVRFFEARVSALRRSGVAADRLILDPG-----MG-FFLSP 182 (279)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCccc-CCCcchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCC-----CC-CCCCC
Confidence 45566778899999999622 11 1111 111456678888999999999999999 6999981 12 5 45
Q ss_pred CHHHHHHHHHHHhhc
Q psy13372 164 SFRVAERLIRELRAH 178 (273)
Q Consensus 164 ~~~~~~~li~~~~~~ 178 (273)
+.++-+++++.|+.+
T Consensus 183 ~~~~n~~ll~~l~~l 197 (279)
T PRK13753 183 APETSLHVLSNLQKL 197 (279)
T ss_pred ChHHHHHHHHhHHHH
Confidence 788889999665554
No 239
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=80.25 E-value=33 Score=30.78 Aligned_cols=113 Identities=17% Similarity=0.147 Sum_probs=64.5
Q ss_pred HHHHHHHHHcCCCeEEecCC-CC---------CCC---HHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFP-PV---------GVT---LEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASL 90 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~-~~---------~~~---~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (273)
.+.++.++++|+..|.+... .+ ..+ ..+..+.++++|+...++.+-.+ + |. ++.+.+
T Consensus 100 ~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~G----l---Pg---qt~~~~ 169 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYA----L---PG---QTIEDF 169 (377)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecC----C---CC---CCHHHH
Confidence 58899999999999998853 11 122 34445567788887544433221 2 11 124577
Q ss_pred HHHHHHHHHcCCCeEEecC-----CCCCCC-CCCCCCCcchHHHHHHHHHHHHHHHhhCCcE
Q psy13372 91 EKTIQYACALNIPAIHIMS-----GKTESS-RTQPIASEDPYTTLKENLIYACAELERHSLT 146 (273)
Q Consensus 91 ~~~i~~a~~lG~~~i~~~~-----G~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~ 146 (273)
++.++.+.+++...+.+.+ |..-.. ...........+...+.+..+.+..++.|-.
T Consensus 170 ~~~l~~~~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~ 231 (377)
T PRK08599 170 KESLAKALALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFH 231 (377)
T ss_pred HHHHHHHHccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 8888899999999886643 221000 0000000111234455667777888888854
No 240
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=80.18 E-value=30 Score=32.40 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHcCCCeEEecC
Q psy13372 88 ASLEKTIQYACALNIPAIHIMS 109 (273)
Q Consensus 88 ~~~~~~i~~a~~lG~~~i~~~~ 109 (273)
+.+...++.+..++...+.+++
T Consensus 336 ed~~~tl~~l~~L~pd~isv~~ 357 (488)
T PRK08207 336 EEVKHTLEEIEKLNPESLTVHT 357 (488)
T ss_pred HHHHHHHHHHHhcCcCEEEEEe
Confidence 3445555555556665555543
No 241
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=80.12 E-value=29 Score=29.66 Aligned_cols=46 Identities=9% Similarity=0.021 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHcCCCeEEecC-CCCCCCHHHHHHHHHHcCCeeEEEecC
Q psy13372 22 NYLDKYRVAAELGFRYIESWF-PPVGVTLEQLVAAQTRHGLKQVLINTE 69 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~-~~~~~~~~~~~~~l~~~gL~i~~~~~~ 69 (273)
.++..++.++++|.++|=+.- |. ....++.+.++++|+....+..|
T Consensus 107 G~e~F~~~~~~aGvdgviipDLP~--ee~~~~~~~~~~~gi~~I~lv~P 153 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIPDLPY--EESDYLISVCNLYNIELILLIAP 153 (263)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCH--HHHHHHHHHHHHcCCCEEEEECC
Confidence 789999999999999998873 33 35688899999999999977654
No 242
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=80.04 E-value=13 Score=32.33 Aligned_cols=111 Identities=11% Similarity=-0.048 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCCCC-CCCCCCCCCCcch----HHHHHHHHHHHHHHHhhCCcEEEEccCCCCCC
Q psy13372 83 ESEFRASLEKTIQYACALNIPAIHIMSGKT-ESSRTQPIASEDP----YTTLKENLIYACAELERHSLTALIEPVNQHSV 157 (273)
Q Consensus 83 ~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~~~~~~~~~~~----~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~ 157 (273)
.....+.+..+++.|.++|++++.+..-.. +..+ +++. ++-+.+.|.+..+...+.||++-+---
T Consensus 93 H~~G~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR-----~~~EV~~Lm~L~~~~l~~~~~~~~~~~irir~iG~----- 162 (296)
T PRK14827 93 HKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKR-----SPEEVRFLMGFNRDVVRRRRDNLNKMGVRIRWVGS----- 162 (296)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhcC-----CHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEec-----
Confidence 445677899999999999999999965432 2222 2223 334445566666777889998765431
Q ss_pred CCcccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhc
Q psy13372 158 PGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGAC 206 (273)
Q Consensus 158 ~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~ 206 (273)
-..+..+. .+.++++++....+=++++.++-.+-...++.++++.+
T Consensus 163 ~~~Lp~~v---~~~i~~~e~~T~~n~~~~Lnia~~YgGR~EI~~A~~~i 208 (296)
T PRK14827 163 RPRLWRSV---INELAIAEEMTKSNDVITINYCVNYGGRTEITEATREI 208 (296)
T ss_pred hhhCCHHH---HHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHH
Confidence 11222233 33442225544444455555544433223455555554
No 243
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=79.86 E-value=43 Score=29.70 Aligned_cols=135 Identities=15% Similarity=0.076 Sum_probs=0.0
Q ss_pred cCHHHHHHHHHHcCCCeEEecC-------------------CCCCCCH--------HHHHHHHHHcCCeeEE-EecCCcc
Q psy13372 21 ANYLDKYRVAAELGFRYIESWF-------------------PPVGVTL--------EQLVAAQTRHGLKQVL-INTEVDE 72 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~-------------------~~~~~~~--------~~~~~~l~~~gL~i~~-~~~~~~~ 72 (273)
..+.++.+.++++|||+|||+. .|+ .++ +-+.++.+..+..+.. ++.....
T Consensus 142 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yG-GslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~ 220 (337)
T PRK13523 142 LAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYG-GSPENRYRFLREIIDAVKEVWDGPLFVRISASDYH 220 (337)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCC-CCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccC
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccC
Q psy13372 73 NFGYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPV 152 (273)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~ 152 (273)
..|.+ .+.....++...+.|+..+.+..|..... ......-. .+.-...+-+..++.+..=.
T Consensus 221 ~~G~~---------~~e~~~i~~~l~~~gvD~i~vs~g~~~~~------~~~~~~~~--~~~~~~~ik~~~~ipVi~~G- 282 (337)
T PRK13523 221 PGGLT---------VQDYVQYAKWMKEQGVDLIDVSSGAVVPA------RIDVYPGY--QVPFAEHIREHANIATGAVG- 282 (337)
T ss_pred CCCCC---------HHHHHHHHHHHHHcCCCEEEeCCCCCCCC------CCCCCccc--cHHHHHHHHhhcCCcEEEeC-
Q ss_pred CCCCCCCcccCCHHHHHHHHHHHhhcCCCceeE
Q psy13372 153 NQHSVPGYYLSSFRVAERLIRELRAHGISNVQL 185 (273)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~g~ 185 (273)
-+.+++.+.+++ ++-.-.-|++
T Consensus 283 --------~i~~~~~a~~~l---~~g~~D~V~~ 304 (337)
T PRK13523 283 --------LITSGAQAEEIL---QNNRADLIFI 304 (337)
T ss_pred --------CCCCHHHHHHHH---HcCCCChHHh
No 244
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=79.77 E-value=3.7 Score=31.85 Aligned_cols=49 Identities=12% Similarity=0.098 Sum_probs=40.6
Q ss_pred cCHHHHHHHHHHcCCCeEEecCCCC-CCCHHHHHHHHHHcCCeeEEEecC
Q psy13372 21 ANYLDKYRVAAELGFRYIESWFPPV-GVTLEQLVAAQTRHGLKQVLINTE 69 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~l~~~gL~i~~~~~~ 69 (273)
.-++|.+++++++||.-|-+.+=.+ ....+.+.++|+++|+++.++..=
T Consensus 41 tRveEiieFak~mgykkiGiAfCiGL~~EA~~~~~iL~~~gFev~sV~CK 90 (157)
T PF08901_consen 41 TRVEEIIEFAKRMGYKKIGIAFCIGLRKEARILAKILEANGFEVYSVCCK 90 (157)
T ss_pred chHHHHHHHHHHcCCCeeeehhhHhHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 3689999999999999999986422 245688999999999999998763
No 245
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=79.74 E-value=40 Score=29.21 Aligned_cols=118 Identities=8% Similarity=-0.001 Sum_probs=66.4
Q ss_pred cCHHHHHHHHHHcCCCeEEecCC---CCCCC---HHHHHHHHHHcCCeeEE-EecCCccccCCCCCchhHHHHHHHHHHH
Q psy13372 21 ANYLDKYRVAAELGFRYIESWFP---PVGVT---LEQLVAAQTRHGLKQVL-INTEVDENFGYAAVKGKESEFRASLEKT 93 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~~---~~~~~---~~~~~~~l~~~gL~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (273)
.+++ .+..+-++||+.|.+... ++ .. .+++.+....+|+.+-. ++.-.+.+.+.... ........-..+
T Consensus 85 ~~~e-~i~~ai~~GFtSVM~DgS~lp~e-eNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~--~~~~~~T~peea 160 (286)
T PRK12738 85 ESLD-DIRRKVHAGVRSAMIDGSHFPFA-ENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVD--AESAFLTDPQEA 160 (286)
T ss_pred CCHH-HHHHHHHcCCCeEeecCCCCCHH-HHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccc--cchhcCCCHHHH
Confidence 4655 555566999999999974 32 22 47888889999998874 43221111110000 001122345567
Q ss_pred HHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 94 IQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 94 i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
.++.++.|+..+-+-.|..=.....+ +.-. .+.|+++ .+..++.++++-
T Consensus 161 ~~Fv~~TgvD~LAvaiGt~HG~Y~~~--p~Ld----fd~l~~I---~~~~~vPLVLHG 209 (286)
T PRK12738 161 KRFVELTGVDSLAVAIGTAHGLYSKT--PKID----FQRLAEI---REVVDVPLVLHG 209 (286)
T ss_pred HHHHHHhCCCEEEeccCcccCCCCCC--CcCC----HHHHHHH---HHHhCCCEEEeC
Confidence 77788889999887666541111000 1222 3344444 334589999885
No 246
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=79.56 E-value=25 Score=32.90 Aligned_cols=99 Identities=12% Similarity=0.106 Sum_probs=58.9
Q ss_pred HHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCCCe
Q psy13372 25 DKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIPA 104 (273)
Q Consensus 25 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~ 104 (273)
+-++++.+.|+|.|-++|-....++.++++.+++++-.+..+.- + ....+++++...++. +..
T Consensus 178 ~di~f~~~~~vD~ia~SFV~~~~di~~~r~~l~~~~~~~~iiak-I-----------Et~~av~nldeI~~~-----~Dg 240 (480)
T cd00288 178 ADLRFGVEQGVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAK-I-----------ENQEGVNNFDEILEA-----SDG 240 (480)
T ss_pred HHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEE-E-----------CCHHHHHhHHHHHHh-----cCE
Confidence 34789999999999999875447788999999887644332211 0 011234455555443 455
Q ss_pred EEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEE
Q psy13372 105 IHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTAL 148 (273)
Q Consensus 105 i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~ 148 (273)
+-+..|..+.. -..+.+....+++...++++|..+.
T Consensus 241 ImIargDLg~e--------~g~~~v~~~qk~ii~~~~~~gkpvi 276 (480)
T cd00288 241 IMVARGDLGVE--------IPAEEVFLAQKMLIAKCNLAGKPVI 276 (480)
T ss_pred EEECcchhhhh--------cChHHHHHHHHHHHHHHHHcCCCEE
Confidence 66655555432 1234555555666666666665433
No 247
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=79.53 E-value=38 Score=28.91 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=37.7
Q ss_pred cCHHHHHHHHHHcCCCeEEec-CCCCCCCHHHHHHHHHHcCCeeEEEecC
Q psy13372 21 ANYLDKYRVAAELGFRYIESW-FPPVGVTLEQLVAAQTRHGLKQVLINTE 69 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~-~~~~~~~~~~~~~~l~~~gL~i~~~~~~ 69 (273)
..++..++.+++.|++|+=+. .|. ...+.+.+..+++||..+-+..|
T Consensus 109 ~Gie~F~~~~~~~GvdGlivpDLP~--ee~~~~~~~~~~~gi~~I~lvaP 156 (265)
T COG0159 109 YGIEKFLRRAKEAGVDGLLVPDLPP--EESDELLKAAEKHGIDPIFLVAP 156 (265)
T ss_pred hhHHHHHHHHHHcCCCEEEeCCCCh--HHHHHHHHHHHHcCCcEEEEeCC
Confidence 367889999999999999775 343 34568889999999999988765
No 248
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=79.52 E-value=14 Score=31.28 Aligned_cols=111 Identities=10% Similarity=0.060 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCCCC-CCCCCCCCCCcchH----HHHHHHHHHHHHHHhhCCcEEEEccCCCCCC
Q psy13372 83 ESEFRASLEKTIQYACALNIPAIHIMSGKT-ESSRTQPIASEDPY----TTLKENLIYACAELERHSLTALIEPVNQHSV 157 (273)
Q Consensus 83 ~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~~~~~~~~~~~~----~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~ 157 (273)
.....+.++..++.|..+|++.+++..-.. +..+ +++.. +-+.+.+.+..+...+.||++-+=- .
T Consensus 44 H~~G~~~l~~i~~~c~~~gI~~lTvyaFS~EN~~R-----p~~EV~~Lm~L~~~~l~~~~~~~~~~~irv~~iG--d--- 113 (253)
T PRK14832 44 HRQGARTLKELLRCCKDWGIKALTAYAFSTENWQR-----PIEEVDFLMLLFERLLRRELAQMHREGVRISFIG--D--- 113 (253)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCC-----CHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe--C---
Confidence 344567899999999999999999975433 2222 23333 3444555565666778899876532 1
Q ss_pred CCcccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhc
Q psy13372 158 PGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGAC 206 (273)
Q Consensus 158 ~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~ 206 (273)
...+ +++..+.+++.+.....+=++++.++-.+-...++.++++.+
T Consensus 114 ~~~L---p~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~k~~ 159 (253)
T PRK14832 114 LSAL---PKSLQTEMERSMTETLNNQAIHFTVAVNYGSRNEITRACRQV 159 (253)
T ss_pred chhC---CHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHH
Confidence 1122 334444443334544444455555544443333455555554
No 249
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=79.49 E-value=38 Score=30.42 Aligned_cols=112 Identities=11% Similarity=0.073 Sum_probs=64.0
Q ss_pred HHHHHHHHHcCCCeEEecCC-CC---------CCCH---HHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFP-PV---------GVTL---EQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASL 90 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~-~~---------~~~~---~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (273)
++.++.++++|+..|.+... .+ ..+. .+..+.++++|+.-.++.+-.+ -++. +.+.+
T Consensus 108 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~G-lPgq---------t~~~~ 177 (375)
T PRK05628 108 PEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYG-TPGE---------SDDDW 177 (375)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEecc-CCCC---------CHHHH
Confidence 57889999999999998853 11 1222 3444567788887333333221 1111 24677
Q ss_pred HHHHHHHHHcCCCeEEecCCCCCCCCC-------CCCCCcchHHHHHHHHHHHHHHHhhCCcE
Q psy13372 91 EKTIQYACALNIPAIHIMSGKTESSRT-------QPIASEDPYTTLKENLIYACAELERHSLT 146 (273)
Q Consensus 91 ~~~i~~a~~lG~~~i~~~~G~~~~~~~-------~~~~~~~~~~~~~~~l~~l~~~a~~~gv~ 146 (273)
++.++.+.++|...+.+.+-...++.. ... .....+...+.+..+.+..++.|-.
T Consensus 178 ~~tl~~~~~l~~~~i~~y~l~~~~gT~l~~~~~~g~~-~~~~~~~~~~~~~~~~~~l~~~G~~ 239 (375)
T PRK05628 178 RASLDAALEAGVDHVSAYALIVEDGTALARRVRRGEL-PAPDDDVLADRYELADARLSAAGFD 239 (375)
T ss_pred HHHHHHHHhcCCCEEEeeeeecCCCChHHHHhhcCCC-CCCChHHHHHHHHHHHHHHHHcCCC
Confidence 889999999999988765422211100 000 0112334455666677777777753
No 250
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=79.47 E-value=21 Score=29.44 Aligned_cols=73 Identities=8% Similarity=0.005 Sum_probs=55.9
Q ss_pred cCHHHHHHHHHHcCCCeEEecCC---C------C--CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHH
Q psy13372 21 ANYLDKYRVAAELGFRYIESWFP---P------V--GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRAS 89 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~~---~------~--~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (273)
+.++..++.+++.|+..|.+.-- . + ..+.+.++.++++.|.++.+.- .|+...+..++..++.
T Consensus 179 P~~d~vi~~l~~~~~~~v~L~PlMlvAG~Ha~nDMasddedswk~il~~~G~~v~~~l------~GLGE~~~iq~ifi~H 252 (265)
T COG4822 179 PLVDTVIEYLRKNGIKEVHLIPLMLVAGDHAKNDMASDDEDSWKNILEKNGFKVEVYL------HGLGENPAIQAIFIDH 252 (265)
T ss_pred CcHHHHHHHHHHcCCceEEEeeeEEeechhhhhhhcccchHHHHHHHHhCCceeEEEe------ecCCCcHHHHHHHHHH
Confidence 35788899999999999988621 0 1 2456899999999999997542 2345678889999999
Q ss_pred HHHHHHHHHH
Q psy13372 90 LEKTIQYACA 99 (273)
Q Consensus 90 ~~~~i~~a~~ 99 (273)
++.+++....
T Consensus 253 ik~aie~~~e 262 (265)
T COG4822 253 IKDAIERDNE 262 (265)
T ss_pred HHHHHhhhhh
Confidence 9999886643
No 251
>PRK02929 L-arabinose isomerase; Provisional
Probab=79.45 E-value=45 Score=31.37 Aligned_cols=133 Identities=11% Similarity=0.034 Sum_probs=82.2
Q ss_pred cchHHHHHHHHHHHHHHHhh---CCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcC-CCce-eEeeecccccccCC
Q psy13372 123 EDPYTTLKENLIYACAELER---HSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHG-ISNV-QLQFDFFNAQRICG 197 (273)
Q Consensus 123 ~~~~~~~~~~l~~l~~~a~~---~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~-g~~~D~~h~~~~~~ 197 (273)
++.++++.+.-+++++...+ .++++...+ .+.|++++.+++ ++.+ .+++ |+.+-...+ ....
T Consensus 21 ~~~l~~~~~~~~~i~~~l~~~~~~~~~vv~~~---------~v~~~~~i~~~~---~~~~~~~~~dgvi~~m~TF-s~a~ 87 (499)
T PRK02929 21 EETLRQVAEHAEEIVDGLNASGKLPVKIVLKP---------VLTTPDEITAVC---REANYDDNCAGVITWMHTF-SPAK 87 (499)
T ss_pred hhHHHHHHHHHHHHHHHhcccCCCCeEEEEcC---------ccCCHHHHHHHH---HHccccCCCcEEEEccCCC-chHH
Confidence 46778888888888887666 445555333 588999999999 8877 4554 444443333 3233
Q ss_pred ChHHHHHhcCCcceeEEe---ccCCCCCCCCC------CCcccHHHHHHHHHHcCCCceEEEeeecCCChHHHHHHHHHh
Q psy13372 198 DLTHTFGACRDLIGHVQI---AQAPDRQEPHA------RGEIDYAYVFELLAREGYEGYVGLEYKPQGNTKEGLEEFLKT 268 (273)
Q Consensus 198 ~~~~~i~~~~~~i~~vHi---~d~~~~~~~g~------~G~id~~~i~~~L~~~gy~g~~~lE~~~~~~~~~~~~~~~~~ 268 (273)
-+...++.+..-+.|.|. .+.|- ..+.. +.-.--..+-..|.+.|..-.++......+...+.+..|+|.
T Consensus 88 ~~i~~~~~l~~PvL~~~~Q~~~e~p~-~~id~d~m~lnqs~~G~~e~~~il~R~gi~~~~v~G~~~d~~v~~~i~~w~ra 166 (499)
T PRK02929 88 MWIRGLSALQKPLLHLHTQFNAEIPW-DTIDMDFMNLNQSAHGDREFGFIGARLRKQRKVVVGHWQDPEVQERIGAWMRV 166 (499)
T ss_pred HHHHHHHHcCCCEEEEecCCCccCCC-CCCCcchhhhhhcccChHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHH
Confidence 456667778777888998 55322 11111 011123344567777776655555554455677888878887
Q ss_pred h
Q psy13372 269 F 269 (273)
Q Consensus 269 ~ 269 (273)
.
T Consensus 167 a 167 (499)
T PRK02929 167 A 167 (499)
T ss_pred H
Confidence 3
No 252
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=79.35 E-value=29 Score=28.61 Aligned_cols=99 Identities=15% Similarity=0.084 Sum_probs=54.1
Q ss_pred HHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCC
Q psy13372 23 YLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNI 102 (273)
Q Consensus 23 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~ 102 (273)
+...++.+++.|+-.|+-.... .....+..++.|+....-.++. ++....+....++++++..|++=|.
T Consensus 108 m~~vl~~l~~~gl~FvDS~T~~----~s~a~~~A~~~gvp~~~rdvfL-------D~~~~~~~I~~ql~~~~~~A~~~G~ 176 (213)
T PF04748_consen 108 MRWVLEVLKERGLFFVDSRTTP----RSVAPQVAKELGVPAARRDVFL-------DNDQDEAAIRRQLDQAARIARKQGS 176 (213)
T ss_dssp HHHHHHHHHHTT-EEEE-S--T----T-SHHHHHHHCT--EEE-SEET-------TST-SHHHHHHHHHHHHHHHHCCSE
T ss_pred HHHHHHHHHHcCCEEEeCCCCc----ccHHHHHHHHcCCCEEeeceec-------CCCCCHHHHHHHHHHHHHhhhhcCc
Confidence 4445555555555555433211 1222344556666655544332 2234556677888899999998665
Q ss_pred CeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEE
Q psy13372 103 PAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTAL 148 (273)
Q Consensus 103 ~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~ 148 (273)
-.++.|+. + ..++.|+++.+..++.||.++
T Consensus 177 aI~Igh~~-----------p-----~Tl~~L~~~~~~l~~~gi~lV 206 (213)
T PF04748_consen 177 AIAIGHPR-----------P-----ETLEALEEWLPELEAQGIELV 206 (213)
T ss_dssp EEEEEE-S-----------C-----CHHHHHHHHHHHHHHCTEEE-
T ss_pred EEEEEcCC-----------H-----HHHHHHHHHHhHHhhCCEEEE
Confidence 55554542 1 156788888999999999876
No 253
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=79.32 E-value=12 Score=33.76 Aligned_cols=162 Identities=14% Similarity=0.057 Sum_probs=75.1
Q ss_pred HHHHHHHHcCCCeEEecCCCCCCCHHHHHHH-HHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCCC
Q psy13372 25 DKYRVAAELGFRYIESWFPPVGVTLEQLVAA-QTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIP 103 (273)
Q Consensus 25 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~-l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~ 103 (273)
+.++.+.++|.|.|.--... .+.+++++. ++...+.+-++=.+.-. ........+-..+.+-+.|+.-.+-|+.
T Consensus 80 ~K~~~A~~~GADtvMDLStg--gdl~~iR~~il~~~~vpvGTVPiYqa~---~~~~~~~~~~t~d~~~~~ie~qa~~GVD 154 (420)
T PF01964_consen 80 EKLKIAEKAGADTVMDLSTG--GDLDEIRRAILENSPVPVGTVPIYQAA---IRKGGSIVDMTEDDFFDVIEKQAKDGVD 154 (420)
T ss_dssp HHHHHHHHTT-SEEEE---S--TTHHHHHHHHHHT-SS-EEE-HHHHHH---HHTTT-GGG--HHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHhCCCEEEEcCCC--CCHHHHHHHHHHhCCCccccchHHHHH---HHhCCChhhCCHHHHHHHHHHHHHcCCC
Confidence 34667789999999654332 578888855 55556666554222101 0001111222345666777777788999
Q ss_pred eEEecCCCCCC--------CCCCCC------------CCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccC
Q psy13372 104 AIHIMSGKTES--------SRTQPI------------ASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLS 163 (273)
Q Consensus 104 ~i~~~~G~~~~--------~~~~~~------------~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~ 163 (273)
++++|.|-... .+-.++ ......+-+.+.+.++++++++|+|+|.|=.--+ |++...
T Consensus 155 fmtiH~git~~~~~~~~~~~R~~giVSRGGs~l~~WM~~n~~ENPly~~fD~lLeI~k~yDVtLSLGDglR---PG~i~D 231 (420)
T PF01964_consen 155 FMTIHCGITRETLERLKKSGRIMGIVSRGGSILAAWMLHNGKENPLYEHFDRLLEIAKEYDVTLSLGDGLR---PGCIAD 231 (420)
T ss_dssp EEEE-TT--GGGGGGGT--TSSS----HHHHHHHHHHHHHTS--HHHHTHHHHHHHHTTTT-EEEE--TT-----SSGGG
T ss_pred EEEEccchhHHHHHHHhhhccccCccccchHHHHHHHHhcCCcCcHHHhHHHHHHHHHHhCeeEecccccC---CCCcCC
Confidence 99999985311 110011 0112234567889999999999999999987322 555444
Q ss_pred CHHH--HHHHH--HHH-hhcCCCceeEeeec-ccccc
Q psy13372 164 SFRV--AERLI--REL-RAHGISNVQLQFDF-FNAQR 194 (273)
Q Consensus 164 ~~~~--~~~li--~~~-~~~~~~~~g~~~D~-~h~~~ 194 (273)
..+. ..+++ .|| +.....+|.+.+.- ||...
T Consensus 232 a~D~aQi~EL~~lgeL~~rA~e~gVQvMVEGPGHVPl 268 (420)
T PF01964_consen 232 ATDRAQIQELIILGELVKRAREAGVQVMVEGPGHVPL 268 (420)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHHTT--EEEEE-SB--G
T ss_pred CCcHHHHHHHHHHHHHHHHHHHCCCeEEeeCCCCCCH
Confidence 3332 22222 122 22222456666553 67643
No 254
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=79.32 E-value=7.5 Score=32.82 Aligned_cols=63 Identities=14% Similarity=0.092 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCC
Q psy13372 89 SLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVN 153 (273)
Q Consensus 89 ~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~ 153 (273)
.....++..+.+|+..|+++.+......+.| .-..-....+.|+++++.|.++||.+.|-.+.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~--~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~ 84 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNP--GYNYDETYLARLDRIVDAAQAYGIYVILDLHN 84 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTST--TTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCC--CccccHHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 4556788889999999999876422110001 11234577889999999999999987777655
No 255
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=79.31 E-value=34 Score=28.60 Aligned_cols=105 Identities=20% Similarity=0.151 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN 101 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG 101 (273)
++++.++..+++|.+.|-++.......+.++.+.++++|++.-.. . +++. | ++.++..++... -
T Consensus 70 ~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGla-l----nP~T---~------~~~l~~~l~~vD--~ 133 (229)
T PRK09722 70 DPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLV-L----NPET---P------VESIKYYIHLLD--K 133 (229)
T ss_pred CHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEE-e----CCCC---C------HHHHHHHHHhcC--E
Confidence 578889999999999999987632135667778899999886421 1 1111 1 233334444221 1
Q ss_pred CCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 102 IPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 102 ~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
+-.|.+.||..+. .-.....+.++++.++..+.|..+.||-
T Consensus 134 VLvMsV~PGf~GQ---------~fi~~~l~KI~~lr~~~~~~~~~~~IeV 174 (229)
T PRK09722 134 ITVMTVDPGFAGQ---------PFIPEMLDKIAELKALRERNGLEYLIEV 174 (229)
T ss_pred EEEEEEcCCCcch---------hccHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 2234555554322 2345666777777777778887777776
No 256
>PRK08444 hypothetical protein; Provisional
Probab=79.19 E-value=47 Score=29.71 Aligned_cols=136 Identities=7% Similarity=0.005 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHcCCCeEEec-CCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCC-cE--EEE----ccCCCCCCCC
Q psy13372 88 ASLEKTIQYACALNIPAIHIM-SGKTESSRTQPIASEDPYTTLKENLIYACAELERHS-LT--ALI----EPVNQHSVPG 159 (273)
Q Consensus 88 ~~~~~~i~~a~~lG~~~i~~~-~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~g-v~--i~l----E~~~~~~~~~ 159 (273)
+.+..+++.|+++|.+.-... .|- .+.++..++.|..|-++-.+.| +. |-+ ++.+- .+
T Consensus 189 ~~~~~i~~~a~~~Gi~~~sg~l~G~-----------gEt~edrv~hl~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l---~~ 254 (353)
T PRK08444 189 ERWLEIHKYWHKKGKMSNATMLFGH-----------IENREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYL---KV 254 (353)
T ss_pred HHHHHHHHHHHHcCCCccceeEEec-----------CCCHHHHHHHHHHHHHhccccCCceEEEecccCCCCCcC---CC
Confidence 677788888999999874321 221 1346677778777777766655 33 222 22211 12
Q ss_pred cccCCHHHHHHHHHHHhhcCCCceeEeeecc-cccc----cCCChHHHHHhc-CCcceeEEeccCCCCCCC-CCCC-ccc
Q psy13372 160 YYLSSFRVAERLIRELRAHGISNVQLQFDFF-NAQR----ICGDLTHTFGAC-RDLIGHVQIAQAPDRQEP-HARG-EID 231 (273)
Q Consensus 160 ~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~-h~~~----~~~~~~~~i~~~-~~~i~~vHi~d~~~~~~~-g~~G-~id 231 (273)
.-..++.+.++++ .- .++.+|-. |++. .|..+.+..-.+ ++-+....+.+....... .. + .++
T Consensus 255 ~~~~~~~e~Lr~i---Ai-----~Rl~L~~i~ni~a~w~~~g~~~~q~~L~~Ga~D~ggt~~~e~i~~~ag~~~-~~~~~ 325 (353)
T PRK08444 255 EKFPSSQEILKTI---AI-----SRILLDNIPHIKAYWATLTLNLALVAQEFGANDLDGTIEKESIQSAAGAKS-ANGLS 325 (353)
T ss_pred CCCCCHHHHHHHH---HH-----HHHhcCCCCccccccccCcHHHHHHHHhcCCccCccccccccchhhccCCC-CCCCC
Confidence 2346777877777 32 22333322 4322 122222211122 244444443432111111 12 3 467
Q ss_pred HHHHHHHHHHcCCCc
Q psy13372 232 YAYVFELLAREGYEG 246 (273)
Q Consensus 232 ~~~i~~~L~~~gy~g 246 (273)
.+++.+.+++.||..
T Consensus 326 ~~~l~~~i~~~g~~p 340 (353)
T PRK08444 326 LEDFIFLIKDSGFIP 340 (353)
T ss_pred HHHHHHHHHHcCCCe
Confidence 899999999999863
No 257
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=79.16 E-value=39 Score=28.74 Aligned_cols=91 Identities=12% Similarity=0.059 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCC-CCCCCCCCCCcch
Q psy13372 47 VTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKT-ESSRTQPIASEDP 125 (273)
Q Consensus 47 ~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~~~~~~~~~~~ 125 (273)
.+.++..+.+++.|+....+.+...... . .+.... +.+....+.+.+.|...+.++.+.. +... + .++.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~-~--~~~~~~---~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~--~--~~~~ 79 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSW-L--SRPLKK---ERAEKFKAIAEEGPSICLSVHAPYLINLAS--P--DKEK 79 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCcc-C--CCCCCH---HHHHHHHHHHHHcCCCcEEEEcCceeccCC--C--CHHH
Confidence 4567778889999988776654211111 1 111111 2344444445555454555554432 1111 1 3456
Q ss_pred HHHHHHHHHHHHHHHhhCCcEE
Q psy13372 126 YTTLKENLIYACAELERHSLTA 147 (273)
Q Consensus 126 ~~~~~~~l~~l~~~a~~~gv~i 147 (273)
.+..++.+++++++|++.|+..
T Consensus 80 r~~~~~~~~~~i~~A~~lG~~~ 101 (279)
T cd00019 80 REKSIERLKDEIERCEELGIRL 101 (279)
T ss_pred HHHHHHHHHHHHHHHHHcCCCE
Confidence 8888999999999999999874
No 258
>PRK11904 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=78.71 E-value=72 Score=33.03 Aligned_cols=121 Identities=11% Similarity=0.121 Sum_probs=69.2
Q ss_pred HHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC-------CCeEEecCCCCCCCCCCCCCCcchH
Q psy13372 54 AAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN-------IPAIHIMSGKTESSRTQPIASEDPY 126 (273)
Q Consensus 54 ~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG-------~~~i~~~~G~~~~~~~~~~~~~~~~ 126 (273)
+.+++.|+..+ +.+- ++. ..+.+..+.+.+.+.++|+....-. ...|.+-......... +.+.+..+
T Consensus 194 ~~l~~~G~~~s-~D~L--GE~--~~t~~~a~~~~~~y~~~i~~i~~~~~~~~~~~~~~iSvKlSal~~~~~-~~~~~~~~ 267 (1038)
T PRK11904 194 RSARNKGYRYS-FDML--GEA--ALTAADAERYFKAYARAIEAIGRAAGGADLPARPGISIKLSALHPRYE-AAQRERVL 267 (1038)
T ss_pred HHHHhCCCEEE-EEcc--CCC--CCCHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCeEEEehhhcccccc-ccChhhHH
Confidence 44667788754 2221 122 1345566666677766677655421 3455554322222210 11245668
Q ss_pred HHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhc----CCCceeEeee
Q psy13372 127 TTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAH----GISNVQLQFD 188 (273)
Q Consensus 127 ~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~g~~~D 188 (273)
+.+.+++++|+..|+++|+.+.|.-.. ....+.++++++++..- +-+++|+++-
T Consensus 268 ~~~~~rl~~l~~~A~~~~~~v~IDaEe--------~~~~~~tL~l~~~l~~~~~~~~~~~~Giv~Q 325 (1038)
T PRK11904 268 AELVPRVLELARLAKEANIGLTIDAEE--------ADRLELSLDLFEALFRDPSLKGWGGFGLAVQ 325 (1038)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeCCC--------cChHHHHHHHHHHHhcCccccCCCCeeEEEE
Confidence 889999999999999999999988632 23456667777332210 1235677764
No 259
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=78.70 E-value=43 Score=28.95 Aligned_cols=139 Identities=15% Similarity=0.255 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCc-EEEEccCCCCCCCCcccCC
Q psy13372 86 FRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSL-TALIEPVNQHSVPGYYLSS 164 (273)
Q Consensus 86 ~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~i~lE~~~~~~~~~~~~~~ 164 (273)
..+.+.+.++.+..+|++.|.+..|.+ -- .. .+.++++.+++.|+ .+.+.+- +.++
T Consensus 41 s~eei~~~i~~~~~~gi~~I~~tGGEP-ll------~~--------~l~~iv~~l~~~g~~~v~i~TN------G~ll-- 97 (302)
T TIGR02668 41 SPEEIERIVRVASEFGVRKVKITGGEP-LL------RK--------DLIEIIRRIKDYGIKDVSMTTN------GILL-- 97 (302)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECccc-cc------cc--------CHHHHHHHHHhCCCceEEEEcC------chHH--
Confidence 345677888888999999988854332 11 11 13345556666788 7888762 2222
Q ss_pred HHHHHHHHHHHhhcCCCceeEeeeccccc----ccC-CCh---HHHHHhcCCc-ceeEEeccCCCCCCCCCCCcccHHHH
Q psy13372 165 FRVAERLIRELRAHGISNVQLQFDFFNAQ----RIC-GDL---THTFGACRDL-IGHVQIAQAPDRQEPHARGEIDYAYV 235 (273)
Q Consensus 165 ~~~~~~li~~~~~~~~~~~g~~~D~~h~~----~~~-~~~---~~~i~~~~~~-i~~vHi~d~~~~~~~g~~G~id~~~i 235 (273)
.+..+-+ ...+-..+.+.+|..+.. ..+ ..+ .+.++.+... +..+.+.-. ..+|. -.-++..+
T Consensus 98 -~~~~~~l---~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v---~~~g~-n~~ei~~~ 169 (302)
T TIGR02668 98 -EKLAKKL---KEAGLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMV---VLKGI-NDNEIPDM 169 (302)
T ss_pred -HHHHHHH---HHCCCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEE---EeCCC-CHHHHHHH
Confidence 2222233 555556788899986531 122 233 3334443322 111222211 12333 44457888
Q ss_pred HHHHHHcCCCceEEEeeecCC
Q psy13372 236 FELLAREGYEGYVGLEYKPQG 256 (273)
Q Consensus 236 ~~~L~~~gy~g~~~lE~~~~~ 256 (273)
++.+++.|.. .-.+|+.|.+
T Consensus 170 ~~~~~~~g~~-~~~ie~~p~~ 189 (302)
T TIGR02668 170 VEFAAEGGAI-LQLIELMPPG 189 (302)
T ss_pred HHHHHhcCCE-EEEEEEeECC
Confidence 8888888876 5667776643
No 260
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=78.53 E-value=5.5 Score=32.86 Aligned_cols=79 Identities=15% Similarity=0.067 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHcCCCeEEecCC---CCCCCHHHHHHHHHHcCCeeEE-EecCCccccCCCCCchhHHHHHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFP---PVGVTLEQLVAAQTRHGLKQVL-INTEVDENFGYAAVKGKESEFRASLEKTIQYA 97 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~---~~~~~~~~~~~~l~~~gL~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 97 (273)
..++.+..++++||+.|||+.- .......++.+...+.|+.+-+ ++.- . + ........+...+.|...
T Consensus 91 kvdeyl~e~~~lGfe~iEIS~G~i~m~~eek~~lIe~a~d~Gf~vlsEvGkk-~------~-e~~~~l~~~d~~k~i~~d 162 (258)
T COG1809 91 KVDEYLNEAKELGFEAIEISNGTIPMSTEEKCRLIERAVDEGFMVLSEVGKK-D------P-ESDSALSPDDRVKLINDD 162 (258)
T ss_pred cHHHHHHHHHHcCccEEEecCCeeecchHHHHHHHHHHHhcccEEehhhccc-C------c-chhhhcChHHHHHHHHHH
Confidence 6888999999999999999853 2212345556666677777654 2211 0 1 111112223344455555
Q ss_pred HHcCCCeEEec
Q psy13372 98 CALNIPAIHIM 108 (273)
Q Consensus 98 ~~lG~~~i~~~ 108 (273)
-..|++.+.+.
T Consensus 163 vdaGa~~vi~e 173 (258)
T COG1809 163 VDAGAEYVIAE 173 (258)
T ss_pred HHcchHHhhhh
Confidence 55677776653
No 261
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=78.47 E-value=30 Score=29.83 Aligned_cols=143 Identities=9% Similarity=0.042 Sum_probs=76.4
Q ss_pred cCHHHHHHHHHHcCCCeEEecCC---CC--CCCHHHHHHHHHHcCCeeEE-EecCCccccCCCCCchhHHHHHHHHHHHH
Q psy13372 21 ANYLDKYRVAAELGFRYIESWFP---PV--GVTLEQLVAAQTRHGLKQVL-INTEVDENFGYAAVKGKESEFRASLEKTI 94 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~~---~~--~~~~~~~~~~l~~~gL~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (273)
.+++. +..+-++||+.|.+... ++ -...+++.+..+..|+.+-. ++.-.+...+. ... +.....-..+.
T Consensus 80 ~~~~~-i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~---~~~-~~~~T~pe~a~ 154 (276)
T cd00947 80 SSFEL-IKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGV---VGD-EGLLTDPEEAE 154 (276)
T ss_pred CCHHH-HHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCc---ccc-cccCCCHHHHH
Confidence 35544 45667899999999975 22 01247888889999998874 33211111110 000 11222345677
Q ss_pred HHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHH
Q psy13372 95 QYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRE 174 (273)
Q Consensus 95 ~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~ 174 (273)
+++.+.|+..+.+-.|..=.... .-.+.-.++ .|+++.+. .++.++++--+ ..+.++..+.+
T Consensus 155 ~Fv~~TgvD~LAvsiGt~HG~Y~-~~~p~L~~~----~L~~i~~~---~~vPLVlHGgS--------G~~~e~~~~ai-- 216 (276)
T cd00947 155 EFVEETGVDALAVAIGTSHGAYK-GGEPKLDFD----RLKEIAER---VNVPLVLHGGS--------GIPDEQIRKAI-- 216 (276)
T ss_pred HHHHHHCCCEEEeccCccccccC-CCCCccCHH----HHHHHHHH---hCCCEEEeCCC--------CCCHHHHHHHH--
Confidence 77777899998776665411110 000222232 34444333 37999988522 23445555555
Q ss_pred HhhcCCCceeEeeecc
Q psy13372 175 LRAHGISNVQLQFDFF 190 (273)
Q Consensus 175 ~~~~~~~~~g~~~D~~ 190 (273)
+ . --.++++++.
T Consensus 217 -~-~--Gi~KiNi~T~ 228 (276)
T cd00947 217 -K-L--GVCKININTD 228 (276)
T ss_pred -H-c--CCeEEEeChH
Confidence 2 2 2356666663
No 262
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=78.29 E-value=39 Score=29.24 Aligned_cols=142 Identities=8% Similarity=0.022 Sum_probs=75.7
Q ss_pred HHHHHHHHHcCCCeEEecCC---CC--CCCHHHHHHHHHHcCCeeEE-EecCCccccCCCCCchhHHHHHHHHHHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFP---PV--GVTLEQLVAAQTRHGLKQVL-INTEVDENFGYAAVKGKESEFRASLEKTIQYA 97 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~---~~--~~~~~~~~~~l~~~gL~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 97 (273)
.+.+..+-++||+.|.+... ++ -...+++.+....+|+.+-. ++.-.+.+.+...+ ..+.....-..+.++.
T Consensus 87 ~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~--~~~~~~T~peeA~~Fv 164 (284)
T PRK12737 87 LDDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVD--EKDAMYTNPDAAAEFV 164 (284)
T ss_pred HHHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccc--cccccCCCHHHHHHHH
Confidence 45667777899999999974 22 02247888889999998874 43221111110000 0011122334566677
Q ss_pred HHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhh
Q psy13372 98 CALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRA 177 (273)
Q Consensus 98 ~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~ 177 (273)
++.|+..+-+-.|..=.....+ +.-.++ .|+++ .+..++.++++--+ ..+.++..+.+ +
T Consensus 165 ~~TgvD~LAvaiGt~HG~y~~~--p~Ld~~----~L~~I---~~~~~iPLVlHGgS--------G~~~e~~~kai---~- 223 (284)
T PRK12737 165 ERTGIDSLAVAIGTAHGLYKGE--PKLDFE----RLAEI---REKVSIPLVLHGAS--------GVPDEDVKKAI---S- 223 (284)
T ss_pred HHhCCCEEeeccCccccccCCC--CcCCHH----HHHHH---HHHhCCCEEEeCCC--------CCCHHHHHHHH---H-
Confidence 7789998877666541110000 222232 34443 33447889888522 23344544444 2
Q ss_pred cCCCceeEeeecc
Q psy13372 178 HGISNVQLQFDFF 190 (273)
Q Consensus 178 ~~~~~~g~~~D~~ 190 (273)
. --.++++++.
T Consensus 224 ~--Gi~KiNi~T~ 234 (284)
T PRK12737 224 L--GICKVNVATE 234 (284)
T ss_pred C--CCeEEEeCcH
Confidence 2 2366777763
No 263
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=78.02 E-value=34 Score=27.43 Aligned_cols=152 Identities=18% Similarity=0.090 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcC-CeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHc
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHG-LKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACAL 100 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~g-L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l 100 (273)
+..+.++.+.+.|++.||+..... ...+.++.+.+.++ +.+-.-.+ . + ..-++.+..+
T Consensus 17 ~~~~~~~~l~~~G~~~vev~~~~~-~~~~~i~~l~~~~~~~~iGag~v-------~--~-----------~~~~~~a~~~ 75 (190)
T cd00452 17 DALALAEALIEGGIRAIEITLRTP-GALEAIRALRKEFPEALIGAGTV-------L--T-----------PEQADAAIAA 75 (190)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCh-hHHHHHHHHHHHCCCCEEEEEeC-------C--C-----------HHHHHHHHHc
Confidence 566778888899999999997643 45567777777776 33222111 1 1 1245667779
Q ss_pred CCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCC
Q psy13372 101 NIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGI 180 (273)
Q Consensus 101 G~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 180 (273)
|+..++.+ + . . ..+.+.++.+|+.+.++. .|++++.+.+ + .+-
T Consensus 76 Ga~~i~~p-~-~---------~-----------~~~~~~~~~~~~~~i~gv-----------~t~~e~~~A~---~-~Ga 118 (190)
T cd00452 76 GAQFIVSP-G-L---------D-----------PEVVKAANRAGIPLLPGV-----------ATPTEIMQAL---E-LGA 118 (190)
T ss_pred CCCEEEcC-C-C---------C-----------HHHHHHHHHcCCcEECCc-----------CCHHHHHHHH---H-CCC
Confidence 99999742 1 1 1 146677777888776543 2677777666 4 455
Q ss_pred CceeEeeecccccccCCChHHHHHhcCCcceeEEeccCCCCCCCCCCCcccHHHHHHHHHHcCCCceE
Q psy13372 181 SNVQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAPDRQEPHARGEIDYAYVFELLAREGYEGYV 248 (273)
Q Consensus 181 ~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~~vHi~d~~~~~~~g~~G~id~~~i~~~L~~~gy~g~~ 248 (273)
..+++ ++....+ .+.++.+......+.+. -. |-++...+-+.++ .|.++..
T Consensus 119 d~i~~----~p~~~~g---~~~~~~l~~~~~~~p~~--------a~-GGI~~~n~~~~~~-~G~~~v~ 169 (190)
T cd00452 119 DIVKL----FPAEAVG---PAYIKALKGPFPQVRFM--------PT-GGVSLDNAAEWLA-AGVVAVG 169 (190)
T ss_pred CEEEE----cCCcccC---HHHHHHHHhhCCCCeEE--------Ee-CCCCHHHHHHHHH-CCCEEEE
Confidence 67776 2222112 33444443221111111 23 6778777666555 6766543
No 264
>KOG1602|consensus
Probab=77.86 E-value=14 Score=31.25 Aligned_cols=114 Identities=11% Similarity=0.104 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCCCCC-CCCCCCCCCcchHHHHHHHHHHHHH---HHhhCCcEEEEccCCCCCCC
Q psy13372 83 ESEFRASLEKTIQYACALNIPAIHIMSGKTE-SSRTQPIASEDPYTTLKENLIYACA---ELERHSLTALIEPVNQHSVP 158 (273)
Q Consensus 83 ~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~-~~~~~~~~~~~~~~~~~~~l~~l~~---~a~~~gv~i~lE~~~~~~~~ 158 (273)
.+.....+...+++|..+|++.|.+.+.... ..++ |...+-.+.-+.+.++++.+ ...++||+|-+=-
T Consensus 62 H~aGf~~l~~ile~C~~lGI~~vT~fAFSieNFkRs-~eEVd~LM~L~~~k~~~~~~~~~~~~~~gvririiG------- 133 (271)
T KOG1602|consen 62 HEAGFEALKEILELCKELGIKEVTVFAFSIENFKRS-PEEVDGLMDLALEKIERLLEQGEKLDKYGVRIRVIG------- 133 (271)
T ss_pred hHHHHHHHHHHHHHHHHcCCcEEEEEEEehhhhCCC-HHHHHHHHHHHHHHHHHHHHHhhhhhhcCeEEEEEc-------
Confidence 3455678999999999999999999765432 2221 11122233344444555443 3457999987653
Q ss_pred CcccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHh
Q psy13372 159 GYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGA 205 (273)
Q Consensus 159 ~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~ 205 (273)
...--+++..+.+.+.++....|=++.+-++-.+.+..++..+++.
T Consensus 134 -dlslL~~~l~k~i~~ieE~Tknn~~~~L~vcf~Ytsr~EI~~a~r~ 179 (271)
T KOG1602|consen 134 -DLSLLPESLRKAIKKIEEATKNNTRLILNVCFAYTSRDEILHAVRG 179 (271)
T ss_pred -chhhCCHHHHHHHHHHHHHhhcCCceEEEEEeccCcHHHHHHHHHH
Confidence 1112233444455343555545556666666555544445544444
No 265
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=77.85 E-value=30 Score=28.93 Aligned_cols=202 Identities=9% Similarity=0.037 Sum_probs=103.5
Q ss_pred ccccccccccccccccCHHHHHHHHHHcCCCeEEecCC---CC---CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCC
Q psy13372 6 FKLAANLTLLFNDLAANYLDKYRVAAELGFRYIESWFP---PV---GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAV 79 (273)
Q Consensus 6 ~k~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~---~~---~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~ 79 (273)
++++.|. +...-. .+.+.++.+.+ |.+.+.+..- +- ....+.++++.+...+.+..+-+- .+
T Consensus 3 ~~I~pSi-l~ad~~--~l~~el~~l~~-g~d~lH~DiMDG~FVPN~tfg~~~i~~ir~~t~~~~DvHLMv--------~~ 70 (229)
T PRK09722 3 MKISPSL-MCMDLL--KFKEQIEFLNS-KADYFHIDIMDGHFVPNLTLSPFFVSQVKKLASKPLDVHLMV--------TD 70 (229)
T ss_pred ceEEeeh-hhcCHH--HHHHHHHHHHh-CCCEEEEecccCccCCCcccCHHHHHHHHhcCCCCeEEEEEe--------cC
Confidence 3455444 333334 67889999988 9999988842 11 134555555444445555443321 23
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCC
Q psy13372 80 KGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPG 159 (273)
Q Consensus 80 ~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~ 159 (273)
|+ +.++.....|+..|.+|.= .. . ..+.++.+..++.|++.++=-- |+
T Consensus 71 P~----------~~i~~~~~aGad~it~H~E---a~-------~-------~~~~~~i~~Ik~~G~kaGlaln-----P~ 118 (229)
T PRK09722 71 PQ----------DYIDQLADAGADFITLHPE---TI-------N-------GQAFRLIDEIRRAGMKVGLVLN-----PE 118 (229)
T ss_pred HH----------HHHHHHHHcCCCEEEECcc---CC-------c-------chHHHHHHHHHHcCCCEEEEeC-----CC
Confidence 32 2455555679999999851 11 0 1234556677777877554421 22
Q ss_pred cccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCC-hHH---HHHhcCCcceeEEeccCCCCCCCCCCCcccHHHH
Q psy13372 160 YYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGD-LTH---TFGACRDLIGHVQIAQAPDRQEPHARGEIDYAYV 235 (273)
Q Consensus 160 ~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~-~~~---~i~~~~~~i~~vHi~d~~~~~~~g~~G~id~~~i 235 (273)
+..+....++ ..++ --+-++.+.|.. |+. ... -++++...+.. + ... ....-+|-++...+
T Consensus 119 ---T~~~~l~~~l---~~vD-~VLvMsV~PGf~---GQ~fi~~~l~KI~~lr~~~~~---~-~~~-~~IeVDGGI~~~~i 183 (229)
T PRK09722 119 ---TPVESIKYYI---HLLD-KITVMTVDPGFA---GQPFIPEMLDKIAELKALRER---N-GLE-YLIEVDGSCNQKTY 183 (229)
T ss_pred ---CCHHHHHHHH---HhcC-EEEEEEEcCCCc---chhccHHHHHHHHHHHHHHHh---c-CCC-eEEEEECCCCHHHH
Confidence 3455666777 6554 125555555543 222 122 22222222210 0 000 01111288886644
Q ss_pred HHHHHHcCCCceEEE--eeec-CCChHHHHHHHHHh
Q psy13372 236 FELLAREGYEGYVGL--EYKP-QGNTKEGLEEFLKT 268 (273)
Q Consensus 236 ~~~L~~~gy~g~~~l--E~~~-~~~~~~~~~~~~~~ 268 (273)
..+.+.|-+..++= -++. ..+..+.++ -+|+
T Consensus 184 -~~~~~aGad~~V~Gss~iF~~~~d~~~~i~-~l~~ 217 (229)
T PRK09722 184 -EKLMEAGADVFIVGTSGLFNLDEDIDEAWD-IMTA 217 (229)
T ss_pred -HHHHHcCCCEEEEChHHHcCCCCCHHHHHH-HHHH
Confidence 57777888744322 1343 346677777 6655
No 266
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=77.82 E-value=38 Score=27.87 Aligned_cols=147 Identities=17% Similarity=0.175 Sum_probs=86.5
Q ss_pred CHHHHHH---HHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHH
Q psy13372 22 NYLDKYR---VAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYAC 98 (273)
Q Consensus 22 ~~~~~l~---~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~ 98 (273)
+.++.+. .+.+-|++.||+.+.-+ ...+.++.+.++++ ++. ++. +-. + +++ .++.|.
T Consensus 23 ~~e~a~~~a~Ali~gGi~~IEITl~sp-~a~e~I~~l~~~~p-~~l-IGA---GTV-L--~~~-----------q~~~a~ 82 (211)
T COG0800 23 DVEEALPLAKALIEGGIPAIEITLRTP-AALEAIRALAKEFP-EAL-IGA---GTV-L--NPE-----------QARQAI 82 (211)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCC-CHHHHHHHHHHhCc-ccE-Ecc---ccc-c--CHH-----------HHHHHH
Confidence 5566554 55677999999998754 56788888888888 333 111 111 1 232 345567
Q ss_pred HcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhc
Q psy13372 99 ALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAH 178 (273)
Q Consensus 99 ~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~ 178 (273)
..|+++++.+ |.. .++++.|..+|+.+. |+ +.|+-++...+ + .
T Consensus 83 ~aGa~fiVsP-~~~---------------------~ev~~~a~~~~ip~~---------PG--~~TptEi~~Al---e-~ 125 (211)
T COG0800 83 AAGAQFIVSP-GLN---------------------PEVAKAANRYGIPYI---------PG--VATPTEIMAAL---E-L 125 (211)
T ss_pred HcCCCEEECC-CCC---------------------HHHHHHHHhCCCccc---------CC--CCCHHHHHHHH---H-c
Confidence 7899999864 211 256788889999876 44 44677777666 3 3
Q ss_pred CCCceeEeeecccccccCCChHHHHHhcCCcceeEEeccCCCCCCCCCCCcccHHHHHHHHH
Q psy13372 179 GISNVQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAPDRQEPHARGEIDYAYVFELLA 240 (273)
Q Consensus 179 ~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~~vHi~d~~~~~~~g~~G~id~~~i~~~L~ 240 (273)
+...+++ +.....|+ ...++.+..-..++.++=+ |-++...+-..|.
T Consensus 126 G~~~lK~----FPa~~~Gg--~~~~ka~~gP~~~v~~~pT---------GGVs~~N~~~yla 172 (211)
T COG0800 126 GASALKF----FPAEVVGG--PAMLKALAGPFPQVRFCPT---------GGVSLDNAADYLA 172 (211)
T ss_pred Chhheee----cCccccCc--HHHHHHHcCCCCCCeEeec---------CCCCHHHHHHHHh
Confidence 4343433 33433332 3455555443444444432 6666666655554
No 267
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=77.74 E-value=46 Score=28.76 Aligned_cols=55 Identities=7% Similarity=-0.031 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEE-EccCC
Q psy13372 86 FRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTAL-IEPVN 153 (273)
Q Consensus 86 ~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~-lE~~~ 153 (273)
..+.+.+.|+.+.+.|...+.+..-..+.. . .+.+.++++++++.|+.+. +|.++
T Consensus 132 ~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~------n-------~~ei~~~~~~~~~~g~~~~~ie~~p 187 (302)
T TIGR02668 132 ALDRVIEGIESAVDAGLTPVKLNMVVLKGI------N-------DNEIPDMVEFAAEGGAILQLIELMP 187 (302)
T ss_pred cHHHHHHHHHHHHHcCCCcEEEEEEEeCCC------C-------HHHHHHHHHHHHhcCCEEEEEEEeE
Confidence 456777888888888876332211111111 1 1236677788888898643 55544
No 268
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=77.71 E-value=28 Score=26.40 Aligned_cols=119 Identities=12% Similarity=0.039 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCCeEEecCC--C-C-C----CCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFP--P-V-G----VTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQ 95 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~--~-~-~----~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (273)
....+.++..||+.|-.-.. . . . .-.....+.+.+.||.+..+....... .+......+.....-+.++.
T Consensus 7 ~~~~~~l~~aGy~~VgrYl~~~~~~~~~~~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~~--~~~~~~~~~~G~~dA~~A~~ 84 (136)
T PF08924_consen 7 SASAQALKAAGYRAVGRYLSGSRGGCAMRQKNLTAGEVQDIRAAGLRIFPIYQGGGRE--TSDFTYGYAQGVADARDAVA 84 (136)
T ss_dssp HHHHHHHHHT---SEEEESS-BTTTB-----B--HHHHHHHHHTT-EEEEEE----------S-B--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEEcCCCCCCcccccCCCCHHHHHHHHHCCCEEEEEEeccccc--ccccccHHHHHHHHHHHHHH
Confidence 46678888999999944432 1 1 0 112455566888999999875432101 11123344567788899999
Q ss_pred HHHHcCCCe-EEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEE
Q psy13372 96 YACALNIPA-IHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALI 149 (273)
Q Consensus 96 ~a~~lG~~~-i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~l 149 (273)
.|..+|.+. ..+.. ....+ ....+..+.++..++-+.+.....|-++++
T Consensus 85 ~A~~lG~p~gt~IYf-avD~d----~~~~~~~~~i~~Y~~g~~~~l~~~gY~~Gv 134 (136)
T PF08924_consen 85 AARALGFPAGTPIYF-AVDYD----ATDAECDSAILPYFRGWNSALGASGYRPGV 134 (136)
T ss_dssp HHHHTT--SS-EEEE-E--TS-----B-HH-------HHHHHHHHHGGGT-EEEE
T ss_pred HHHHcCCCCCCEEEE-EeecC----CCchhhhhHHHHHHHHHHHHHhhCCCccee
Confidence 999999885 33321 12221 113344667778888888888877766554
No 269
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=77.64 E-value=38 Score=30.04 Aligned_cols=132 Identities=17% Similarity=0.183 Sum_probs=73.9
Q ss_pred HHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHH
Q psy13372 94 IQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIR 173 (273)
Q Consensus 94 i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~ 173 (273)
|..|..+||..|-+..+-.+. +.|.++.++|+..|+...+|.| +.+++.+.+
T Consensus 196 I~eAr~~GADAVLLIaaiL~~----------------~~L~~l~~~A~~LGme~LVEVH-----------~~~ElerAl- 247 (338)
T PLN02460 196 IYYARSKGADAILLIAAVLPD----------------LDIKYMLKICKSLGMAALIEVH-----------DEREMDRVL- 247 (338)
T ss_pred HHHHHHcCCCcHHHHHHhCCH----------------HHHHHHHHHHHHcCCeEEEEeC-----------CHHHHHHHH-
Confidence 556677788877665443321 2588999999999999999974 456666666
Q ss_pred HHhhcCCCceeEe---eecccccccCCChHHHHHhcCCcceeEEeccCCCCCCCCCCCcccHHHHHHHHHHcCCCceEEE
Q psy13372 174 ELRAHGISNVQLQ---FDFFNAQRICGDLTHTFGACRDLIGHVQIAQAPDRQEPHARGEIDYAYVFELLAREGYEGYVGL 250 (273)
Q Consensus 174 ~~~~~~~~~~g~~---~D~~h~~~~~~~~~~~i~~~~~~i~~vHi~d~~~~~~~g~~G~id~~~i~~~L~~~gy~g~~~l 250 (273)
+..+..-+|++ ++++.. |+.... ++.+....=++.. .+.....+.|.-...+ +..+++.|+++.++=
T Consensus 248 --~~~ga~iIGINNRdL~Tf~v-----Dl~~t~-~L~~~~~~~~i~~-~~~~~VsESGI~t~~D-v~~l~~~GadAvLVG 317 (338)
T PLN02460 248 --GIEGVELIGINNRSLETFEV-----DISNTK-KLLEGERGEQIRE-KGIIVVGESGLFTPDD-VAYVQNAGVKAVLVG 317 (338)
T ss_pred --hcCCCCEEEEeCCCCCcceE-----CHHHHH-HHhhhccccccCC-CCeEEEECCCCCCHHH-HHHHHHCCCCEEEEC
Confidence 53243446664 222222 332222 2222100000000 0111223315444444 455667999999988
Q ss_pred eee-cCCChHHHHH
Q psy13372 251 EYK-PQGNTKEGLE 263 (273)
Q Consensus 251 E~~-~~~~~~~~~~ 263 (273)
|.. ...++.+.++
T Consensus 318 EsLMr~~dp~~~l~ 331 (338)
T PLN02460 318 ESLVKQDDPGKGIA 331 (338)
T ss_pred HHHhCCCCHHHHHH
Confidence 854 4567777777
No 270
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=77.56 E-value=46 Score=28.68 Aligned_cols=133 Identities=15% Similarity=-0.046 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHc-CCCeEEecCCCCC---CCH---HH-HHHHHHHcCCeeEEE-ecCCccccCCCCCchhHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAEL-GFRYIESWFPPVG---VTL---EQ-LVAAQTRHGLKQVLI-NTEVDENFGYAAVKGKESEFRASLEK 92 (273)
Q Consensus 22 ~~~~~l~~~~~~-G~~~vEl~~~~~~---~~~---~~-~~~~l~~~gL~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (273)
.+...++++.+. |.++|=+.+..++ .+. .+ ++..++..+=++..+ ++. .. ..+...+
T Consensus 22 ~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~------~~--------~~~~ai~ 87 (288)
T cd00954 22 VLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVG------SL--------NLKESQE 87 (288)
T ss_pred HHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccC------CC--------CHHHHHH
Confidence 567778888888 9999988865221 122 22 223333333233222 111 10 1234566
Q ss_pred HHHHHHHcCCCeEEecC-CCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHH
Q psy13372 93 TIQYACALNIPAIHIMS-GKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERL 171 (273)
Q Consensus 93 ~i~~a~~lG~~~i~~~~-G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~l 171 (273)
..+.|+.+|+..+.+.+ ..... + .+.++++++.+++... ++.+.+-|.+.. ....-+++...++
T Consensus 88 ~a~~a~~~Gad~v~~~~P~y~~~-------~---~~~i~~~~~~v~~a~~--~lpi~iYn~P~~---tg~~l~~~~~~~L 152 (288)
T cd00954 88 LAKHAEELGYDAISAITPFYYKF-------S---FEEIKDYYREIIAAAA--SLPMIIYHIPAL---TGVNLTLEQFLEL 152 (288)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCC-------C---HHHHHHHHHHHHHhcC--CCCEEEEeCccc---cCCCCCHHHHHHH
Confidence 78888999999987644 32211 1 2456777777765421 577777775432 2233456665666
Q ss_pred HHHHhhcCCCceeEeeec
Q psy13372 172 IRELRAHGISNVQLQFDF 189 (273)
Q Consensus 172 i~~~~~~~~~~~g~~~D~ 189 (273)
. + .||+--.=|.
T Consensus 153 ~---~---~pnivgiK~s 164 (288)
T cd00954 153 F---E---IPNVIGVKFT 164 (288)
T ss_pred h---c---CCCEEEEEeC
Confidence 6 4 3776555554
No 271
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=77.52 E-value=37 Score=28.10 Aligned_cols=144 Identities=11% Similarity=-0.023 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN 101 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG 101 (273)
+++..++..+++|.+.|-++.... ..+.++.+.++++|++.-..- ++.. | ++.++..++... .
T Consensus 69 ~p~~~i~~~~~~gad~i~~H~Ea~-~~~~~~l~~ik~~g~k~Glal-----nP~T---p------~~~i~~~l~~~D--~ 131 (220)
T PRK08883 69 PVDRIIPDFAKAGASMITFHVEAS-EHVDRTLQLIKEHGCQAGVVL-----NPAT---P------LHHLEYIMDKVD--L 131 (220)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCc-ccHHHHHHHHHHcCCcEEEEe-----CCCC---C------HHHHHHHHHhCC--e
Confidence 678888999999999999987643 456777888899998865321 1111 1 233344444222 1
Q ss_pred CCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCCC
Q psy13372 102 IPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGIS 181 (273)
Q Consensus 102 ~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 181 (273)
+-.+.+.||.-+. .......+.++++.++..++|..+-+|--+ .-+.+.+.+++ +.+..
T Consensus 132 vlvMtV~PGfgGq---------~fi~~~lekI~~l~~~~~~~~~~~~I~vdG--------GI~~eni~~l~----~aGAd 190 (220)
T PRK08883 132 ILLMSVNPGFGGQ---------SFIPHTLDKLRAVRKMIDESGRDIRLEIDG--------GVKVDNIREIA----EAGAD 190 (220)
T ss_pred EEEEEecCCCCCc---------eecHhHHHHHHHHHHHHHhcCCCeeEEEEC--------CCCHHHHHHHH----HcCCC
Confidence 2233444443321 234456667778877777777666566522 22355555555 44433
Q ss_pred ceeEeeecccccccCCChHHHHHhcC
Q psy13372 182 NVQLQFDFFNAQRICGDLTHTFGACR 207 (273)
Q Consensus 182 ~~g~~~D~~h~~~~~~~~~~~i~~~~ 207 (273)
.+-+- -......|+.+.++++.
T Consensus 191 ~vVvG----SaIf~~~d~~~~i~~l~ 212 (220)
T PRK08883 191 MFVAG----SAIFGQPDYKAVIDEMR 212 (220)
T ss_pred EEEEe----HHHhCCCCHHHHHHHHH
Confidence 32221 12222346666666654
No 272
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=77.24 E-value=45 Score=28.47 Aligned_cols=122 Identities=12% Similarity=0.028 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHH
Q psy13372 89 SLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVA 168 (273)
Q Consensus 89 ~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~ 168 (273)
-+.+.++.|++.|+..+.++- .+ .+...++.+.++++|+...+=- . | .++.+.+
T Consensus 107 G~e~F~~~~~~aGvdgviipD--LP----------------~ee~~~~~~~~~~~gi~~I~lv-~----P---tT~~eri 160 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIPD--LP----------------YEESDYLISVCNLYNIELILLI-A----P---TSSKSRI 160 (263)
T ss_pred CHHHHHHHHHHcCCeEEEecC--CC----------------HHHHHHHHHHHHHcCCCEEEEE-C----C---CCCHHHH
Confidence 456788999999999999852 11 1235567788899998754332 1 1 2234555
Q ss_pred HHHHHHHhhcCCCceeEeeecccccccCC--ChHHHHHhcCCcceeEEeccCCCCCCCCCCCcccHHHHHHHHHHcCCCc
Q psy13372 169 ERLIRELRAHGISNVQLQFDFFNAQRICG--DLTHTFGACRDLIGHVQIAQAPDRQEPHARGEIDYAYVFELLAREGYEG 246 (273)
Q Consensus 169 ~~li~~~~~~~~~~~g~~~D~~h~~~~~~--~~~~~i~~~~~~i~~vHi~d~~~~~~~g~~G~id~~~i~~~L~~~gy~g 246 (273)
.++. +.. =|+.+=++..-..|. .+...++.+..+++. |. +. .-..|- |.-+-+.+ +.+.+.|-+|
T Consensus 161 ~~i~---~~a----~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~-~t-~~--Pi~vGF-GI~~~e~~-~~~~~~GADG 227 (263)
T CHL00200 161 QKIA---RAA----PGCIYLVSTTGVTGLKTELDKKLKKLIETIKK-MT-NK--PIILGF-GISTSEQI-KQIKGWNING 227 (263)
T ss_pred HHHH---HhC----CCcEEEEcCCCCCCCCccccHHHHHHHHHHHH-hc-CC--CEEEEC-CcCCHHHH-HHHHhcCCCE
Confidence 5566 543 245555554433333 344445555555554 32 22 122344 54444444 4477777777
Q ss_pred eEE
Q psy13372 247 YVG 249 (273)
Q Consensus 247 ~~~ 249 (273)
.++
T Consensus 228 vVV 230 (263)
T CHL00200 228 IVI 230 (263)
T ss_pred EEE
Confidence 654
No 273
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=77.06 E-value=46 Score=28.48 Aligned_cols=132 Identities=10% Similarity=-0.060 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCC---CCH---HHHHH-HHHHcC--CeeEEEecCCccccCCCCCchhHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVG---VTL---EQLVA-AQTRHG--LKQVLINTEVDENFGYAAVKGKESEFRASLEK 92 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~---~~~---~~~~~-~l~~~g--L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (273)
.+.+.++++.+.|.++|=+.+..++ .+. .++.+ ..+..+ +.+. .++. .. ..+...+
T Consensus 22 ~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi-~gv~------~~--------~~~~~~~ 86 (284)
T cd00950 22 ALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVI-AGTG------SN--------NTAEAIE 86 (284)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEE-eccC------Cc--------cHHHHHH
Confidence 4677788889999999998865321 122 22222 222222 3322 1110 10 1245567
Q ss_pred HHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHH
Q psy13372 93 TIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLI 172 (273)
Q Consensus 93 ~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li 172 (273)
.++.|+.+|+..+.+.+..... ..-+.+++.++++++. .++.+.+-|.+.. ....-+++...+++
T Consensus 87 ~a~~a~~~G~d~v~~~~P~~~~---------~~~~~l~~~~~~ia~~---~~~pi~lYn~P~~---~g~~ls~~~~~~L~ 151 (284)
T cd00950 87 LTKRAEKAGADAALVVTPYYNK---------PSQEGLYAHFKAIAEA---TDLPVILYNVPGR---TGVNIEPETVLRLA 151 (284)
T ss_pred HHHHHHHcCCCEEEEcccccCC---------CCHHHHHHHHHHHHhc---CCCCEEEEEChhH---hCCCCCHHHHHHHh
Confidence 8888899999988775432211 1135677777777774 4788888886431 12334566666666
Q ss_pred HHHhhcCCCceeEeeec
Q psy13372 173 RELRAHGISNVQLQFDF 189 (273)
Q Consensus 173 ~~~~~~~~~~~g~~~D~ 189 (273)
+. |++--.=|.
T Consensus 152 ---~~---p~v~giK~s 162 (284)
T cd00950 152 ---EH---PNIVGIKEA 162 (284)
T ss_pred ---cC---CCEEEEEEC
Confidence 42 665443343
No 274
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=77.06 E-value=66 Score=30.26 Aligned_cols=106 Identities=11% Similarity=0.004 Sum_probs=64.5
Q ss_pred HHHHHHHHHHcCCCeEEecCCC-CCCCHHHHHHHHHHcCCeeE-EEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHc
Q psy13372 23 YLDKYRVAAELGFRYIESWFPP-VGVTLEQLVAAQTRHGLKQV-LINTEVDENFGYAAVKGKESEFRASLEKTIQYACAL 100 (273)
Q Consensus 23 ~~~~l~~~~~~G~~~vEl~~~~-~~~~~~~~~~~l~~~gL~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l 100 (273)
.+..++.+++.|.|.+-+..+. +-...+...+.+++.|..+. .++... + +. ...+++.+.++.+..+
T Consensus 99 v~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~------s--p~---~t~e~~~~~a~~l~~~ 167 (499)
T PRK12330 99 VDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTV------S--PI---HTVEGFVEQAKRLLDM 167 (499)
T ss_pred HHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEec------C--CC---CCHHHHHHHHHHHHHc
Confidence 4556778888888888887553 21334566677788887663 333211 1 11 1356777888888889
Q ss_pred CCCeEEec--CCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhC--CcEEEEccCCC
Q psy13372 101 NIPAIHIM--SGKTESSRTQPIASEDPYTTLKENLIYACAELERH--SLTALIEPVNQ 154 (273)
Q Consensus 101 G~~~i~~~--~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~--gv~i~lE~~~~ 154 (273)
|+..|.+. .|.. .+.....+++.|++ .. ++.|.++.|+.
T Consensus 168 Gad~I~IkDtaGll---------~P~~~~~LV~~Lk~------~~~~~ipI~~H~Hnt 210 (499)
T PRK12330 168 GADSICIKDMAALL---------KPQPAYDIVKGIKE------ACGEDTRINLHCHST 210 (499)
T ss_pred CCCEEEeCCCccCC---------CHHHHHHHHHHHHH------hCCCCCeEEEEeCCC
Confidence 99988884 2322 33445555555543 23 57888887653
No 275
>PRK05660 HemN family oxidoreductase; Provisional
Probab=77.00 E-value=52 Score=29.66 Aligned_cols=112 Identities=13% Similarity=0.011 Sum_probs=64.8
Q ss_pred HHHHHHHHHHcCCCeEEecCC-CC---------CCCH---HHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHH
Q psy13372 23 YLDKYRVAAELGFRYIESWFP-PV---------GVTL---EQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRAS 89 (273)
Q Consensus 23 ~~~~l~~~~~~G~~~vEl~~~-~~---------~~~~---~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (273)
-.+.++.++++|++.|.+... .+ ..+. .+..+.+++.|+...++..-.+ + |. +..+.
T Consensus 106 ~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~G----l---pg---qt~~~ 175 (378)
T PRK05660 106 EADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHG----L---PD---QSLEE 175 (378)
T ss_pred CHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecC----C---CC---CCHHH
Confidence 357889999999999999853 11 1222 2334557788887544433221 2 11 12567
Q ss_pred HHHHHHHHHHcCCCeEEecCCCCCCCCC---CCCCCcchHHHHHHHHHHHHHHHhhCCc
Q psy13372 90 LEKTIQYACALNIPAIHIMSGKTESSRT---QPIASEDPYTTLKENLIYACAELERHSL 145 (273)
Q Consensus 90 ~~~~i~~a~~lG~~~i~~~~G~~~~~~~---~~~~~~~~~~~~~~~l~~l~~~a~~~gv 145 (273)
+++.++.+.++|..+|.+.+-.+..+.. ... .-...+...+-+..+.+..++.|.
T Consensus 176 ~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~-~~~~~~~~~~~~~~~~~~L~~~Gy 233 (378)
T PRK05660 176 ALDDLRQAIALNPPHLSWYQLTIEPNTLFGSRPP-VLPDDDALWDIFEQGHQLLTAAGY 233 (378)
T ss_pred HHHHHHHHHhcCCCeEEeeccEeccCCcccccCC-CCcCHHHHHHHHHHHHHHHHHcCC
Confidence 8889999999999998775432211100 000 000123344556667788888885
No 276
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=76.96 E-value=52 Score=29.90 Aligned_cols=112 Identities=12% Similarity=0.027 Sum_probs=64.7
Q ss_pred HHHHHHHHHcCCCeEEecCC-CC---------CCCH---HHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFP-PV---------GVTL---EQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASL 90 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~-~~---------~~~~---~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (273)
.+.++.++++|+..|.+..- .+ ..+. .+..+.++++|+...++..-.+ + |. ++.+.+
T Consensus 115 ~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~G----l---Pg---qt~e~~ 184 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISG----L---PH---QTLEDW 184 (400)
T ss_pred HHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecC----C---CC---CCHHHH
Confidence 57899999999999999853 11 1233 3444567788888554443222 2 11 124577
Q ss_pred HHHHHHHHHcCCCeEEecCCCCCCCCC------C-CCCCcchHHHHHHHHHHHHHHHhhCCcE
Q psy13372 91 EKTIQYACALNIPAIHIMSGKTESSRT------Q-PIASEDPYTTLKENLIYACAELERHSLT 146 (273)
Q Consensus 91 ~~~i~~a~~lG~~~i~~~~G~~~~~~~------~-~~~~~~~~~~~~~~l~~l~~~a~~~gv~ 146 (273)
++.++.+..++..+|.+.+-.+..+.. . .. .....+...+.+..+.+..++.|-.
T Consensus 185 ~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~-~~~~~~~~~~~~~~~~~~L~~~Gy~ 246 (400)
T PRK07379 185 QASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKA-PLPSDETTAAMYRLAQEILTQAGYE 246 (400)
T ss_pred HHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCC-CCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 788899999999988765322211100 0 00 0111234455566677778888853
No 277
>PF02610 Arabinose_Isome: L-arabinose isomerase; InterPro: IPR003762 The Escherichia coli araBAD operon consists of three genes encoding three enzymes that convert L-arabinose to D-xylulose-5 phosphate. L-arabinose isomerase (AraA) 5.3.1.4 from EC catalyses the conversion of L-arabinose to L-ribulose as the first step in the pathway of L-arabinose utilization as a carbon source [].; GO: 0008733 L-arabinose isomerase activity, 0008152 metabolic process; PDB: 4F2D_A 2AJT_C 2HXG_C.
Probab=76.91 E-value=29 Score=30.91 Aligned_cols=133 Identities=8% Similarity=0.081 Sum_probs=78.8
Q ss_pred CcchHHHHHHHHHHHHHHHhhCC---cEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcC-CCceeEeeecccccccCC
Q psy13372 122 SEDPYTTLKENLIYACAELERHS---LTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHG-ISNVQLQFDFFNAQRICG 197 (273)
Q Consensus 122 ~~~~~~~~~~~l~~l~~~a~~~g---v~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~g~~~D~~h~~~~~~ 197 (273)
-++.++++.+.=+++++...+.+ +++..-| .+.|++++.+++ .+.+ ++++-..+=.-|......
T Consensus 20 g~e~L~~v~~~s~~i~~~l~~~~~~p~~vv~k~---------~~~t~~~i~~~~---~~an~~~~c~gvi~wMhTfSpak 87 (359)
T PF02610_consen 20 GEETLKQVAEHSREIVDGLNASGSLPVKVVFKP---------VVTTPEEITRVC---KEANADEDCDGVITWMHTFSPAK 87 (359)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHS--SSEEEE------------B-SHHHHHHHH---HHHHH-TTEEEEEEEESS---TH
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCceEEEecC---------ccCCHHHHHHHH---HHhhccCCccEEeehhhhhccHH
Confidence 35578888888888888776655 5677665 478999999999 6664 367666665566655555
Q ss_pred ChHHHHHhcCCcceeEEeccCCCCCCCCC----------CCcccHHHHHHHHHHcCCCceEEEeeecCCChHHHHHHHHH
Q psy13372 198 DLTHTFGACRDLIGHVQIAQAPDRQEPHA----------RGEIDYAYVFELLAREGYEGYVGLEYKPQGNTKEGLEEFLK 267 (273)
Q Consensus 198 ~~~~~i~~~~~~i~~vHi~d~~~~~~~g~----------~G~id~~~i~~~L~~~gy~g~~~lE~~~~~~~~~~~~~~~~ 267 (273)
.+...++.+..-+.|+|+.-+ +..|-+ ++..--+++--.+.+.|-+--++.-+...+...+.+..|++
T Consensus 88 mwI~gl~~l~kPllhl~tQ~~--~~ip~~~iDmd~MnlNqsAHgdrEfg~i~~R~gi~~kvV~G~w~D~~v~~~I~~W~r 165 (359)
T PF02610_consen 88 MWIPGLQRLQKPLLHLHTQPN--RAIPWDTIDMDFMNLNQSAHGDREFGFIFSRMGIPRKVVVGHWQDEEVWAEIGDWMR 165 (359)
T ss_dssp HHHHHHHH--S-EEEEE--SS--SS--TTT--HHHHHSS-HHHHHHHHHHHHHHTT--EEEEES-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCeEEeecccc--cCCCcccCCHHHHHHhhcccccHHHHHHHHHhCCCcCeEeeeCCCHHHHHHHHHHHH
Confidence 677888888888999998754 332211 12222345555677777776777777666667788877887
Q ss_pred h
Q psy13372 268 T 268 (273)
Q Consensus 268 ~ 268 (273)
+
T Consensus 166 A 166 (359)
T PF02610_consen 166 A 166 (359)
T ss_dssp H
T ss_pred H
Confidence 6
No 278
>PRK09061 D-glutamate deacylase; Validated
Probab=76.91 E-value=61 Score=30.54 Aligned_cols=104 Identities=10% Similarity=-0.066 Sum_probs=66.9
Q ss_pred HHHcCCCeEEecCCC--C--CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCCCeE
Q psy13372 30 AAELGFRYIESWFPP--V--GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIPAI 105 (273)
Q Consensus 30 ~~~~G~~~vEl~~~~--~--~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i 105 (273)
+-+.|..++-....+ . .....++.+.++++|..+..+.-... . .++ ......+.+.+++|...|++..
T Consensus 178 al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~----~-~~~---~~e~~av~~~i~lA~~~G~rv~ 249 (509)
T PRK09061 178 GLDEGALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLS----N-VDP---RSSVDAYQELIAAAAETGAHMH 249 (509)
T ss_pred HHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcc----c-CCc---hhHHHHHHHHHHHHHHhCCCEE
Confidence 337899999864322 1 12356777888999998887653211 1 011 1224577899999999999977
Q ss_pred EecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 106 HIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 106 ~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
..|....... .+ +..-++.+.|++.|+.+..|..++
T Consensus 250 IsHlss~g~~---------~~----~~~le~I~~Ar~~Gi~Vt~e~~P~ 285 (509)
T PRK09061 250 ICHVNSTSLR---------DI----DRCLALVEKAQAQGLDVTTEAYPY 285 (509)
T ss_pred EEeeccCCcc---------cH----HHHHHHHHHHHHcCCcEEEEecCc
Confidence 7775433211 12 333456777888999999998654
No 279
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=76.86 E-value=37 Score=28.63 Aligned_cols=105 Identities=12% Similarity=0.107 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHcC--CCeEEecCC----CCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELG--FRYIESWFP----PVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQ 95 (273)
Q Consensus 22 ~~~~~l~~~~~~G--~~~vEl~~~----~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (273)
++...=+.+..+| .|++-+.+- ++..-+++..++.++||+.+..=++.. +. ......+...++
T Consensus 23 g~~~~~dlLe~ag~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~----------E~-a~~q~~~~~yl~ 91 (244)
T PF02679_consen 23 GLRYLEDLLESAGDYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLF----------EV-AYQQGKFDEYLE 91 (244)
T ss_dssp -HHHHHHHHHHHGGG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHH----------HH-HHHTT-HHHHHH
T ss_pred CHHHHHHHHHHhhhhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHH----------HH-HHhcChHHHHHH
Confidence 4444445555555 788888753 222336778888999999987533221 11 112457788999
Q ss_pred HHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 96 YACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 96 ~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
.|+.+|...|-+-.|...-. -+...++...+++.|.++.-|-
T Consensus 92 ~~k~lGf~~IEiSdGti~l~--------------~~~r~~~I~~~~~~Gf~v~~Ev 133 (244)
T PF02679_consen 92 ECKELGFDAIEISDGTIDLP--------------EEERLRLIRKAKEEGFKVLSEV 133 (244)
T ss_dssp HHHHCT-SEEEE--SSS-----------------HHHHHHHHHHHCCTTSEEEEEE
T ss_pred HHHHcCCCEEEecCCceeCC--------------HHHHHHHHHHHHHCCCEEeecc
Confidence 99999999999977765321 2234556778889999999886
No 280
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=76.73 E-value=9.1 Score=31.41 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=55.1
Q ss_pred HHHHHHHHHHcCCCeEEecCCCCCCCCCC-CCCCcchHHHHHHHHHHHHHHHhhCCc---EEEEccCCCCCCCCcccCCH
Q psy13372 90 LEKTIQYACALNIPAIHIMSGKTESSRTQ-PIASEDPYTTLKENLIYACAELERHSL---TALIEPVNQHSVPGYYLSSF 165 (273)
Q Consensus 90 ~~~~i~~a~~lG~~~i~~~~G~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~a~~~gv---~i~lE~~~~~~~~~~~~~~~ 165 (273)
..+.++++++.|+..|.+|....+...+. +....+..+.+.+.+.+-.+.+.+.|| +|.+=|.- + |..+.
T Consensus 105 ~~~~~~l~a~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~Gi~~~~Ii~DPgi-----g-f~~~~ 178 (210)
T PF00809_consen 105 DPEMLPLAAEYGAPVVLMHSDGNPKGMPETADYRLDIAEEIIEFLEERIEALEKAGIPRERIILDPGI-----G-FGKDP 178 (210)
T ss_dssp STTHHHHHHHHTSEEEEESESSETTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHTT--GGGEEEETTT-----T-SSTTH
T ss_pred cchhhhhhhcCCCEEEEEecccccccccccchhhhhHHHHHHHHHHHHHHHHHHcCCCHHHEeecccc-----C-cCCCH
Confidence 45688999999999999987643222110 000114577777888887888888999 69999842 2 36677
Q ss_pred HHHHHHHHHHhhc
Q psy13372 166 RVAERLIRELRAH 178 (273)
Q Consensus 166 ~~~~~li~~~~~~ 178 (273)
++..++++.++.+
T Consensus 179 ~~~~~~l~~i~~~ 191 (210)
T PF00809_consen 179 EQNLELLRNIEEL 191 (210)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888544443
No 281
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=76.60 E-value=43 Score=27.85 Aligned_cols=104 Identities=11% Similarity=-0.021 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN 101 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG 101 (273)
+++..++..+++|.+.|-++.... ..+.+..+.++++|++.-..- +++. | ++.++..++... -
T Consensus 73 ~P~~~i~~~~~~gad~I~~H~Ea~-~~~~~~l~~Ir~~g~k~Glal-----nP~T---~------~~~i~~~l~~vD--~ 135 (223)
T PRK08745 73 PVDRIVPDFADAGATTISFHPEAS-RHVHRTIQLIKSHGCQAGLVL-----NPAT---P------VDILDWVLPELD--L 135 (223)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCc-ccHHHHHHHHHHCCCceeEEe-----CCCC---C------HHHHHHHHhhcC--E
Confidence 578889999999999999987643 456777788899998754221 1111 1 233333433221 1
Q ss_pred CCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 102 IPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 102 ~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
+-.+.+.||..+.. -.....+.++++.++..+++..+-||-
T Consensus 136 VlvMtV~PGf~GQ~---------fi~~~l~KI~~l~~~~~~~~~~~~IeV 176 (223)
T PRK08745 136 VLVMSVNPGFGGQA---------FIPSALDKLRAIRKKIDALGKPIRLEI 176 (223)
T ss_pred EEEEEECCCCCCcc---------ccHHHHHHHHHHHHHHHhcCCCeeEEE
Confidence 22345556544322 234566667777777777776666665
No 282
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=76.33 E-value=46 Score=28.13 Aligned_cols=126 Identities=10% Similarity=0.036 Sum_probs=72.5
Q ss_pred HHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHH
Q psy13372 93 TIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLI 172 (273)
Q Consensus 93 ~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li 172 (273)
-|..|..+||..|-+.....+ -+.|.++.+.|...|+...+|.| +.+++.+.+
T Consensus 116 QI~ea~~~GADavLLI~~~L~----------------~~~l~~l~~~a~~lGle~LVEVh-----------~~~El~~a~ 168 (247)
T PRK13957 116 QIREARAFGASAILLIVRILT----------------PSQIKSFLKHASSLGMDVLVEVH-----------TEDEAKLAL 168 (247)
T ss_pred HHHHHHHcCCCEEEeEHhhCC----------------HHHHHHHHHHHHHcCCceEEEEC-----------CHHHHHHHH
Confidence 355667799999987654432 12588899999999999999974 455665555
Q ss_pred HHHhhcCCCceeEeeecccccccCCChHHHHHhcCCcce--eEEeccCCCCCCCCCCCcccHHHHHHHHHHcCCCceEEE
Q psy13372 173 RELRAHGISNVQLQFDFFNAQRICGDLTHTFGACRDLIG--HVQIAQAPDRQEPHARGEIDYAYVFELLAREGYEGYVGL 250 (273)
Q Consensus 173 ~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~--~vHi~d~~~~~~~g~~G~id~~~i~~~L~~~gy~g~~~l 250 (273)
+ .+..-+|++ .-+...-.-|+... .++.+.+. .+-++ ..|.-...++.. +++. +++.++=
T Consensus 169 ---~-~ga~iiGIN--nRdL~t~~vd~~~~-~~L~~~ip~~~~~Is---------ESGI~t~~d~~~-l~~~-~davLvG 230 (247)
T PRK13957 169 ---D-CGAEIIGIN--TRDLDTFQIHQNLV-EEVAAFLPPNIVKVG---------ESGIESRSDLDK-FRKL-VDAALIG 230 (247)
T ss_pred ---h-CCCCEEEEe--CCCCccceECHHHH-HHHHhhCCCCcEEEE---------cCCCCCHHHHHH-HHHh-CCEEEEC
Confidence 4 444445543 22222222333322 22322221 12222 216666666666 4455 9998887
Q ss_pred eee-cCCChHHHHH
Q psy13372 251 EYK-PQGNTKEGLE 263 (273)
Q Consensus 251 E~~-~~~~~~~~~~ 263 (273)
|.. ...++.+.++
T Consensus 231 ~~lm~~~d~~~~~~ 244 (247)
T PRK13957 231 TYFMEKKDIRKAWL 244 (247)
T ss_pred HHHhCCCCHHHHHH
Confidence 743 4456665554
No 283
>PRK09936 hypothetical protein; Provisional
Probab=76.33 E-value=51 Score=28.56 Aligned_cols=156 Identities=15% Similarity=0.069 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHcCCCeEEecCC-CC-------CCCHHHHHHHHHHcCCeeEEEecCCcccc--CCCCCchhHHHHHH-HH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFP-PV-------GVTLEQLVAAQTRHGLKQVLINTEVDENF--GYAAVKGKESEFRA-SL 90 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~-~~-------~~~~~~~~~~l~~~gL~i~~~~~~~~~~~--~~~~~~~~~~~~~~-~~ 90 (273)
.+.+.++.++..||+.+=+.+. ++ ........+...+.||+|. ++.+.+..+ -...|+...+..++ .+
T Consensus 39 qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~-vGL~~Dp~y~q~~~~d~~~~~~yl~~~l 117 (296)
T PRK09936 39 QWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLV-VGLYADPEFFMHQKQDGAALESYLNRQL 117 (296)
T ss_pred HHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEE-EcccCChHHHHHHhcCchhHHHHHHHHH
Confidence 5889999999999999887753 22 1235677778889999998 344433111 12224444444444 35
Q ss_pred HHHHHHHHHcCCCe-EEecCCC-CCCCCCC-CCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHH
Q psy13372 91 EKTIQYACALNIPA-IHIMSGK-TESSRTQ-PIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRV 167 (273)
Q Consensus 91 ~~~i~~a~~lG~~~-i~~~~G~-~~~~~~~-~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~ 167 (273)
.+.+..++..-... +.+ .|. .+.+.++ ....+...+.+...|..+.......+..+.|=.... + -.+++.
T Consensus 118 ~~~~~qa~~~~~~~~~~v-~GWYiP~ElDd~~W~~~~rR~~L~~~L~~~~~~l~~~~kPv~ISay~~----g--~~sP~~ 190 (296)
T PRK09936 118 GASLQQARLWSAAWGVPV-DGWYLPAELDDLNWRDEARRQPLLTWLNAAQRLIDVSAKPVHISAFFA----G--NMSPDG 190 (296)
T ss_pred HHHHHHHHHHHhccCCCC-CeEEeeeccchhcccCHHHHHHHHHHHHHHHHhCCCCCCCeEEEeecc----c--CCChHH
Confidence 55666555444332 111 232 2332221 111333455666667666666554556676665322 2 237888
Q ss_pred HHHHHHHHhhcCCCceeEeee
Q psy13372 168 AERLIRELRAHGISNVQLQFD 188 (273)
Q Consensus 168 ~~~li~~~~~~~~~~~g~~~D 188 (273)
...-+ +.....++++.+-
T Consensus 191 l~~Wl---~~l~~~~l~V~~Q 208 (296)
T PRK09936 191 YRQWL---EQLKATGVNVWVQ 208 (296)
T ss_pred HHHHH---HHHhhcCCeEEEE
Confidence 88888 6665556776554
No 284
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=76.29 E-value=52 Score=28.72 Aligned_cols=134 Identities=7% Similarity=-0.139 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCC---CCH----HHHHHHHHHcCCeeEEE-ecCCccccCCCCCchhHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVG---VTL----EQLVAAQTRHGLKQVLI-NTEVDENFGYAAVKGKESEFRASLEKT 93 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~---~~~----~~~~~~l~~~gL~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (273)
.+...++.+.+.|.++|=+.+..++ .+. +-++...+..+=++..+ ++. . .+ .+...+.
T Consensus 30 ~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~---~--~~---------t~~ai~~ 95 (309)
T cd00952 30 ETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGAT---T--LN---------TRDTIAR 95 (309)
T ss_pred HHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEec---c--CC---------HHHHHHH
Confidence 5677888999999999999875321 122 22233344444333222 211 0 11 2456678
Q ss_pred HHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHH
Q psy13372 94 IQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIR 173 (273)
Q Consensus 94 i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~ 173 (273)
++.|+.+|+..+.+.+...-. ...+.++++++.+++... ++.+.+-|.+.. ....-+++...+|.
T Consensus 96 a~~A~~~Gad~vlv~~P~y~~---------~~~~~l~~yf~~va~a~~--~lPv~iYn~P~~---tg~~l~~~~l~~L~- 160 (309)
T cd00952 96 TRALLDLGADGTMLGRPMWLP---------LDVDTAVQFYRDVAEAVP--EMAIAIYANPEA---FKFDFPRAAWAELA- 160 (309)
T ss_pred HHHHHHhCCCEEEECCCcCCC---------CCHHHHHHHHHHHHHhCC--CCcEEEEcCchh---cCCCCCHHHHHHHh-
Confidence 888999999988775432211 123677888887777432 578888876532 11233444444444
Q ss_pred HHhhcCCCceeEeeec
Q psy13372 174 ELRAHGISNVQLQFDF 189 (273)
Q Consensus 174 ~~~~~~~~~~g~~~D~ 189 (273)
+ .|++.-.=|+
T Consensus 161 --~---~pnivgiKds 171 (309)
T cd00952 161 --Q---IPQVVAAKYL 171 (309)
T ss_pred --c---CCCEEEEEec
Confidence 3 3775554444
No 285
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=76.25 E-value=53 Score=28.87 Aligned_cols=125 Identities=17% Similarity=0.130 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHcCCCeEEecC--CC--------C---CCCHHHHHHHHH----HcCCeeEEEecCCccccCCCCCchhHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWF--PP--------V---GVTLEQLVAAQT----RHGLKQVLINTEVDENFGYAAVKGKES 84 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~--~~--------~---~~~~~~~~~~l~----~~gL~i~~~~~~~~~~~~~~~~~~~~~ 84 (273)
.+.++.+.+.+.||++||++. |. + ..+++.+.++++ ..++.++.- .. .|...+.
T Consensus 78 ~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vK-iR----~G~~~~~---- 148 (321)
T PRK10415 78 EMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLK-IR----TGWAPEH---- 148 (321)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEE-EE----ccccCCc----
Confidence 345556666779999999995 31 0 122333333333 223443321 11 1121111
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCC
Q psy13372 85 EFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSS 164 (273)
Q Consensus 85 ~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~ 164 (273)
......++.+...|+..+.+|+........ -...|+ .++ +..+..++.+.. | .-+.|
T Consensus 149 ---~~~~~~a~~le~~G~d~i~vh~rt~~~~~~----G~a~~~----~i~---~ik~~~~iPVI~-n--------GgI~s 205 (321)
T PRK10415 149 ---RNCVEIAQLAEDCGIQALTIHGRTRACLFN----GEAEYD----SIR---AVKQKVSIPVIA-N--------GDITD 205 (321)
T ss_pred ---chHHHHHHHHHHhCCCEEEEecCccccccC----CCcChH----HHH---HHHHhcCCcEEE-e--------CCCCC
Confidence 234556667788999999998654322111 112232 222 223344565442 1 13778
Q ss_pred HHHHHHHHHHHhhcCCC
Q psy13372 165 FRVAERLIRELRAHGIS 181 (273)
Q Consensus 165 ~~~~~~li~~~~~~~~~ 181 (273)
++++.+++ +..+-.
T Consensus 206 ~~da~~~l---~~~gad 219 (321)
T PRK10415 206 PLKARAVL---DYTGAD 219 (321)
T ss_pred HHHHHHHH---hccCCC
Confidence 99999999 765433
No 286
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=76.23 E-value=57 Score=29.06 Aligned_cols=96 Identities=18% Similarity=0.080 Sum_probs=49.5
Q ss_pred HHHHHHHH-cCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCCC--eEEecCCCCCCCCCCCCCCcchHH
Q psy13372 51 QLVAAQTR-HGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIP--AIHIMSGKTESSRTQPIASEDPYT 127 (273)
Q Consensus 51 ~~~~~l~~-~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~--~i~~~~G~~~~~~~~~~~~~~~~~ 127 (273)
++.+.+++ .++++..++++.+.. . .+++.....++.+.+.++.....|.+ .+.+. |+++.... +.+..-.++
T Consensus 156 ~~~~~~~~~~~l~l~Gi~~H~gs~--~-~~~~~~~~~~~~~~~~~~~l~~~g~~~~~idiG-GG~~~~~~-~~~~~~~~~ 230 (373)
T cd06828 156 EAYRRAKELPGLKLVGLHCHIGSQ--I-LDLEPFVEAAEKLLDLAAELRELGIDLEFLDLG-GGLGIPYR-DEDEPLDIE 230 (373)
T ss_pred HHHHHHHhCCCCcEEEEEEecCCC--C-CCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEeC-CCCCcccC-CCCCCCCHH
Confidence 44444555 789998887754311 1 23444444445554444444444544 44443 33332211 000122466
Q ss_pred HHHHHHHHHHHHHh--hCCcEEEEcc
Q psy13372 128 TLKENLIYACAELE--RHSLTALIEP 151 (273)
Q Consensus 128 ~~~~~l~~l~~~a~--~~gv~i~lE~ 151 (273)
.+.+.+.+..+... ..++++.+||
T Consensus 231 ~~~~~i~~~~~~~~~~~~~~~l~~Ep 256 (373)
T cd06828 231 EYAEAIAEALKELCEGGPDLKLIIEP 256 (373)
T ss_pred HHHHHHHHHHHHHHccCCCceEEEec
Confidence 66666666654442 2479999998
No 287
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=76.22 E-value=57 Score=29.10 Aligned_cols=76 Identities=9% Similarity=0.075 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCCeEEecCC-CC---------CCCH---HHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFP-PV---------GVTL---EQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASL 90 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~-~~---------~~~~---~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (273)
.+.++.++++|+..|.+... .+ ..+. .+..+.++++|+...++..-.+ + |. +..+.+
T Consensus 100 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~G----l---Pg---qt~~~~ 169 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYG----L---PL---QTLNSL 169 (360)
T ss_pred HHHHHHHHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCC----C---CC---CCHHHH
Confidence 56788888889888888753 11 1222 3334456777886444332221 1 11 124567
Q ss_pred HHHHHHHHHcCCCeEEecC
Q psy13372 91 EKTIQYACALNIPAIHIMS 109 (273)
Q Consensus 91 ~~~i~~a~~lG~~~i~~~~ 109 (273)
.+.++.+.++|++.+.+.+
T Consensus 170 ~~~l~~~~~l~~~~is~y~ 188 (360)
T TIGR00539 170 KEELKLAKELPINHLSAYA 188 (360)
T ss_pred HHHHHHHHccCCCEEEeec
Confidence 7788888889988887654
No 288
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=76.15 E-value=43 Score=27.71 Aligned_cols=188 Identities=11% Similarity=0.024 Sum_probs=101.9
Q ss_pred CHHHHHHHHHHcCCCeEEecCC---CC---CCCHHHHHHHHHH-cCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFP---PV---GVTLEQLVAAQTR-HGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTI 94 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~---~~---~~~~~~~~~~l~~-~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (273)
.+.+.++.+.+.|.+.+.+..- +- ...++.++++.+. ..+.+..+-+- .+|+ +.+
T Consensus 13 ~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv--------~~p~----------~~i 74 (220)
T PRK08883 13 RLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMV--------KPVD----------RII 74 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCcccCccccCHHHHHHHHHhCCCCCEEEEecc--------CCHH----------HHH
Confidence 6789999999999999988842 11 1334555554443 35665544321 2232 355
Q ss_pred HHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHH
Q psy13372 95 QYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRE 174 (273)
Q Consensus 95 ~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~ 174 (273)
+.....|+..|.+|.= .. ..+.++.+..++.|++.++=- + | .+..+....++
T Consensus 75 ~~~~~~gad~i~~H~E---a~---------------~~~~~~l~~ik~~g~k~Glal-n----P---~Tp~~~i~~~l-- 126 (220)
T PRK08883 75 PDFAKAGASMITFHVE---AS---------------EHVDRTLQLIKEHGCQAGVVL-N----P---ATPLHHLEYIM-- 126 (220)
T ss_pred HHHHHhCCCEEEEccc---Cc---------------ccHHHHHHHHHHcCCcEEEEe-C----C---CCCHHHHHHHH--
Confidence 5666689999999851 11 124455666777787755442 1 2 23455666677
Q ss_pred HhhcCCCceeEeeeccccccc-CCChHHHHHhcCCcce----eEEeccCCCCCCCCCCCcccHHHHHHHHHHcCCCceEE
Q psy13372 175 LRAHGISNVQLQFDFFNAQRI-CGDLTHTFGACRDLIG----HVQIAQAPDRQEPHARGEIDYAYVFELLAREGYEGYVG 249 (273)
Q Consensus 175 ~~~~~~~~~g~~~D~~h~~~~-~~~~~~~i~~~~~~i~----~vHi~d~~~~~~~g~~G~id~~~i~~~L~~~gy~g~~~ 249 (273)
+.++ --+-++.+.|..-.. -....+-++++...+. ++.+. -+ |-|+.. -+..+.+.|-++.++
T Consensus 127 -~~~D-~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~--------vd-GGI~~e-ni~~l~~aGAd~vVv 194 (220)
T PRK08883 127 -DKVD-LILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLE--------ID-GGVKVD-NIREIAEAGADMFVA 194 (220)
T ss_pred -HhCC-eEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEE--------EE-CCCCHH-HHHHHHHcCCCEEEE
Confidence 6654 114445554432100 0011122333322221 11111 23 888844 556777899887655
Q ss_pred Ee-eecCCChHHHHHHHHHh
Q psy13372 250 LE-YKPQGNTKEGLEEFLKT 268 (273)
Q Consensus 250 lE-~~~~~~~~~~~~~~~~~ 268 (273)
-= ++...+..+.++ .+++
T Consensus 195 GSaIf~~~d~~~~i~-~l~~ 213 (220)
T PRK08883 195 GSAIFGQPDYKAVID-EMRA 213 (220)
T ss_pred eHHHhCCCCHHHHHH-HHHH
Confidence 43 344556777777 5554
No 289
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=76.14 E-value=53 Score=28.72 Aligned_cols=112 Identities=13% Similarity=0.071 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHcCCCeEEecC--CCCCCCHHHHHHHHHHcCCe-eEEEecCCccccCCCCCchhHHHHHHHHHH------
Q psy13372 22 NYLDKYRVAAELGFRYIESWF--PPVGVTLEQLVAAQTRHGLK-QVLINTEVDENFGYAAVKGKESEFRASLEK------ 92 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~--~~~~~~~~~~~~~l~~~gL~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 92 (273)
-++..++.+++.|+.+==+-. ... ...++ ..+++++|.. ++.++... +. ++++ .-++.+++
T Consensus 108 a~eaaLk~~~e~G~~gR~IiNSIn~e-~~~ee-l~llk~yg~aavIvLa~d~----~~-pt~e---~Rl~i~~~~~~~~~ 177 (308)
T PRK00979 108 ARIAAAKYATELGLADRAIYNSINPS-IEEEE-IEALKESDIKAAIVLAFDP----MD-PSVE---GRLKMLEEGGKGQD 177 (308)
T ss_pred HHHHHHHHhhhcCCCCceEEEeccCC-CCHHH-HHHHHHhCCceEEEEEcCC----CC-CCHH---HHHHHHHhccccch
Confidence 356677777777874333322 222 22233 5889999977 45554321 12 2333 34667777
Q ss_pred --HHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCC
Q psy13372 93 --TIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVN 153 (273)
Q Consensus 93 --~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~ 153 (273)
.++.|.+.|...+.+-+...+-. . -....+.++.+-+.. .+.+.+++.|.+
T Consensus 178 ~gll~~a~~~GI~diliDplVlpvs------~---~~~tl~aI~~iK~~~-G~pt~~GlSNiS 230 (308)
T PRK00979 178 KGMLPLAEEAGIERPLVDTAVTPLP------G---SGAAIRAIFAVKAKF-GYPVGCAPHNAP 230 (308)
T ss_pred HHHHHHHHHcCCCcEEeccCCCcCc------c---HHHHHHHHHHHHHHc-CCCeEEEEeCCc
Confidence 89999999999888866554321 1 334455555544444 456778888864
No 290
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=76.07 E-value=42 Score=29.03 Aligned_cols=143 Identities=7% Similarity=0.014 Sum_probs=76.3
Q ss_pred cCHHHHHHHHHHcCCCeEEecCC---CCCCC---HHHHHHHHHHcCCeeEE-EecCCccccCCCCCchhHHHHHHHHHHH
Q psy13372 21 ANYLDKYRVAAELGFRYIESWFP---PVGVT---LEQLVAAQTRHGLKQVL-INTEVDENFGYAAVKGKESEFRASLEKT 93 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~~---~~~~~---~~~~~~~l~~~gL~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (273)
.++ +.+..+-++||+.|.+... ++ .. .+++.+....+|+.+-. ++.-.+.+.+.... ..+.....-..+
T Consensus 85 ~~~-e~i~~Ai~~GftSVM~DgS~l~~e-eNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~--~~~~~~T~peea 160 (284)
T PRK09195 85 EKF-DDIAQKVRSGVRSVMIDGSHLPFA-QNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVD--EADALYTDPAQA 160 (284)
T ss_pred CCH-HHHHHHHHcCCCEEEeCCCCCCHH-HHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccc--cccccCCCHHHH
Confidence 354 5566677899999999975 22 22 47888889999988864 43221211110000 001112233456
Q ss_pred HHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHH
Q psy13372 94 IQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIR 173 (273)
Q Consensus 94 i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~ 173 (273)
.++..+.|+..+-+-.|..=.....+ +.-. .+.|+++.+ ..++.+.++--+ ..+.++..+.+
T Consensus 161 ~~Fv~~TgvD~LAvaiGt~HG~y~~~--p~Ld----~~~L~~I~~---~~~vPLVLHGgS--------G~~~e~~~~ai- 222 (284)
T PRK09195 161 REFVEATGIDSLAVAIGTAHGMYKGE--PKLD----FDRLENIRQ---WVNIPLVLHGAS--------GLPTKDIQQTI- 222 (284)
T ss_pred HHHHHHHCcCEEeeccCccccccCCC--CcCC----HHHHHHHHH---HhCCCeEEecCC--------CCCHHHHHHHH-
Confidence 66667789998877666541111000 2222 334444433 458999988522 22344444444
Q ss_pred HHhhcCCCceeEeeecc
Q psy13372 174 ELRAHGISNVQLQFDFF 190 (273)
Q Consensus 174 ~~~~~~~~~~g~~~D~~ 190 (273)
+ . --.+++++|.
T Consensus 223 --~-~--Gi~KiNi~T~ 234 (284)
T PRK09195 223 --K-L--GICKVNVATE 234 (284)
T ss_pred --H-c--CCeEEEeCcH
Confidence 2 2 3467777763
No 291
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=75.95 E-value=26 Score=30.16 Aligned_cols=58 Identities=9% Similarity=0.091 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcE--EEEc
Q psy13372 91 EKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLT--ALIE 150 (273)
Q Consensus 91 ~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~--i~lE 150 (273)
++-++.|.+.|++.|.+....-+.... .......++.++.+.+++++|+++|+. +.+|
T Consensus 77 ~~die~A~~~g~~~v~i~~s~S~~~~~--~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~e 136 (279)
T cd07947 77 KEDLKLVKEMGLKETGILMSVSDYHIF--KKLKMTREEAMEKYLEIVEEALDHGIKPRCHLE 136 (279)
T ss_pred HHHHHHHHHcCcCEEEEEEcCCHHHHH--HHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 344677788899988775322110000 003345778888999999999999854 6665
No 292
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=75.85 E-value=55 Score=28.72 Aligned_cols=123 Identities=10% Similarity=0.049 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHcCCCeEEecC--CC------C-----CCCHHHHHHH---HHH-c--CCeeEEEecCCccccCCCCCchh
Q psy13372 22 NYLDKYRVAAELGFRYIESWF--PP------V-----GVTLEQLVAA---QTR-H--GLKQVLINTEVDENFGYAAVKGK 82 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~--~~------~-----~~~~~~~~~~---l~~-~--gL~i~~~~~~~~~~~~~~~~~~~ 82 (273)
.+.++.+.+.+.|||+|||+. |. + ..+++.+.++ +.+ . ++.++. =... |.. +.
T Consensus 76 ~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsv-KiR~----g~~-~~-- 147 (312)
T PRK10550 76 WLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTV-KVRL----GWD-SG-- 147 (312)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEE-EEEC----CCC-Cc--
Confidence 456667788899999999995 31 1 1223333333 332 2 244432 1111 121 11
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCccc
Q psy13372 83 ESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYL 162 (273)
Q Consensus 83 ~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~ 162 (273)
+.+...++.+...|+..+++|++....... . +...|+ .++++. +..+|.+.. | .-+
T Consensus 148 -----~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~-g--~~~~~~----~i~~ik---~~~~iPVi~-n--------GdI 203 (312)
T PRK10550 148 -----ERKFEIADAVQQAGATELVVHGRTKEDGYR-A--EHINWQ----AIGEIR---QRLTIPVIA-N--------GEI 203 (312)
T ss_pred -----hHHHHHHHHHHhcCCCEEEECCCCCccCCC-C--CcccHH----HHHHHH---hhcCCcEEE-e--------CCc
Confidence 124567788889999999999765432211 0 111232 222222 233565442 2 137
Q ss_pred CCHHHHHHHHHHHhhcC
Q psy13372 163 SSFRVAERLIRELRAHG 179 (273)
Q Consensus 163 ~~~~~~~~li~~~~~~~ 179 (273)
.|++++.+++ +..+
T Consensus 204 ~t~~da~~~l---~~~g 217 (312)
T PRK10550 204 WDWQSAQQCM---AITG 217 (312)
T ss_pred CCHHHHHHHH---hccC
Confidence 8999999999 7643
No 293
>PRK06801 hypothetical protein; Provisional
Probab=75.84 E-value=44 Score=28.97 Aligned_cols=145 Identities=12% Similarity=0.026 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHcCCCeEEecCCC-C-CC---CHHHHHHHHHHcCCeeEE-EecCCccccCCCCCchhHHHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPP-V-GV---TLEQLVAAQTRHGLKQVL-INTEVDENFGYAAVKGKESEFRASLEKTIQ 95 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~-~-~~---~~~~~~~~l~~~gL~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (273)
...+.++.+-+.||+.|.+.... + +. ..+++.+..+.+|+.+.. ++.-.+.+.+...... ..........+.+
T Consensus 85 ~~~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~-~~~~~T~pe~a~~ 163 (286)
T PRK06801 85 LHFEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEA-DSAKFTDPQLARD 163 (286)
T ss_pred CCHHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCc-ccccCCCHHHHHH
Confidence 34577888889999999998642 1 12 247788889999998743 3321111110000000 0111223356677
Q ss_pred HHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHH
Q psy13372 96 YACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIREL 175 (273)
Q Consensus 96 ~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~ 175 (273)
+.++.|+.++.+..|..-...+ . .+...++ .|+++ .+..++.++++- ++ ..+.+++.+.+
T Consensus 164 f~~~tgvD~LAvaiGt~Hg~y~-~-~~~l~~e----~l~~i---~~~~~~PLVlHG-------GS-gi~~e~~~~~i--- 223 (286)
T PRK06801 164 FVDRTGIDALAVAIGNAHGKYK-G-EPKLDFA----RLAAI---HQQTGLPLVLHG-------GS-GISDADFRRAI--- 223 (286)
T ss_pred HHHHHCcCEEEeccCCCCCCCC-C-CCCCCHH----HHHHH---HHhcCCCEEEEC-------CC-CCCHHHHHHHH---
Confidence 7777899999886555422111 0 0122233 33333 334568888774 21 23456666666
Q ss_pred hhcCCCceeEeeecc
Q psy13372 176 RAHGISNVQLQFDFF 190 (273)
Q Consensus 176 ~~~~~~~~g~~~D~~ 190 (273)
+ . ---++++++.
T Consensus 224 ~-~--Gi~KINv~T~ 235 (286)
T PRK06801 224 E-L--GIHKINFYTG 235 (286)
T ss_pred H-c--CCcEEEehhH
Confidence 3 3 2356666653
No 294
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=75.78 E-value=54 Score=29.29 Aligned_cols=112 Identities=10% Similarity=0.013 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCCeEEecCC-CC---------CCCH---HHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFP-PV---------GVTL---EQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASL 90 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~-~~---------~~~~---~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (273)
++.++.++++|+..|.+... .+ ..+. .+..+.++++|+...++.+-.+ + |. +..+.+
T Consensus 103 ~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~G----l---Pg---qt~e~~ 172 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYC----L---PI---LKLKDL 172 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeec----C---CC---CCHHHH
Confidence 56777888888887777642 10 1222 3333445667765232222111 1 11 124566
Q ss_pred HHHHHHHHHcCCCeEEecCCCCCCCCCC-CCCCcchHHHHHHHHHHHHHHHhhCCc
Q psy13372 91 EKTIQYACALNIPAIHIMSGKTESSRTQ-PIASEDPYTTLKENLIYACAELERHSL 145 (273)
Q Consensus 91 ~~~i~~a~~lG~~~i~~~~G~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~a~~~gv 145 (273)
++.++.+.+++...+.+.+-...++... ........+...+.+..+.+..++.|-
T Consensus 173 ~~tl~~~~~l~p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy 228 (353)
T PRK05904 173 DEVFNFILKHKINHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNY 228 (353)
T ss_pred HHHHHHHHhcCCCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHHcCC
Confidence 7777777778888776643222111000 000001123344556666677777664
No 295
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=75.70 E-value=60 Score=29.11 Aligned_cols=166 Identities=15% Similarity=0.086 Sum_probs=84.9
Q ss_pred HHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCC
Q psy13372 23 YLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNI 102 (273)
Q Consensus 23 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~ 102 (273)
-.+.++.+++.+.. .++...-. ...+.+.. +.+.|+....+..+.............+++.++.+..+++.|+..|.
T Consensus 51 ~~e~i~~i~~~~~~-~~i~~~~r-~~~~di~~-a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~ 127 (365)
T TIGR02660 51 ERAVIRAIVALGLP-ARLMAWCR-ARDADIEA-AARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGL 127 (365)
T ss_pred HHHHHHHHHHcCCC-cEEEEEcC-CCHHHHHH-HHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCC
Confidence 34678888877653 33332211 33444544 44568877655443210000000112466778889999999999996
Q ss_pred CeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcE-EEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCCC
Q psy13372 103 PAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLT-ALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGIS 181 (273)
Q Consensus 103 ~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 181 (273)
. +.+.+- .. +.... +.+.++++.+.+.|+. |+|=- ..-..+|.+..+++ +.+. .
T Consensus 128 ~-v~~~~e--d~-------~r~~~----~~l~~~~~~~~~~Ga~~i~l~D-------T~G~~~P~~v~~lv---~~l~-~ 182 (365)
T TIGR02660 128 F-VSVGGE--DA-------SRADP----DFLVELAEVAAEAGADRFRFAD-------TVGILDPFSTYELV---RALR-Q 182 (365)
T ss_pred E-EEEeec--CC-------CCCCH----HHHHHHHHHHHHcCcCEEEEcc-------cCCCCCHHHHHHHH---HHHH-H
Confidence 5 333211 11 11122 3444555555666754 44332 22356788888888 4442 2
Q ss_pred ceeEeeeccccc-ccCCChHHHHHhcCCcceeEEecc
Q psy13372 182 NVQLQFDFFNAQ-RICGDLTHTFGACRDLIGHVQIAQ 217 (273)
Q Consensus 182 ~~g~~~D~~h~~-~~~~~~~~~i~~~~~~i~~vHi~d 217 (273)
++++.+.+ |.+ ..|..+...+..+..-+.++|.+=
T Consensus 183 ~~~v~l~~-H~HNd~GlA~ANalaA~~aGa~~vd~tl 218 (365)
T TIGR02660 183 AVDLPLEM-HAHNDLGMATANTLAAVRAGATHVNTTV 218 (365)
T ss_pred hcCCeEEE-EecCCCChHHHHHHHHHHhCCCEEEEEe
Confidence 23444443 333 334445555555555555566553
No 296
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=75.53 E-value=42 Score=28.88 Aligned_cols=71 Identities=8% Similarity=0.026 Sum_probs=54.3
Q ss_pred cchHHHHHHHHHHHHHHHhhCCcEEEEcc--CCCCCCC----CcccCCHHHHHHHHHHHhhcCCCceeEeeecccccccC
Q psy13372 123 EDPYTTLKENLIYACAELERHSLTALIEP--VNQHSVP----GYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRIC 196 (273)
Q Consensus 123 ~~~~~~~~~~l~~l~~~a~~~gv~i~lE~--~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~ 196 (273)
...++.-++.-++++++|+++||.+--|. +...... ....++++++.+++ ++.+-..+.+.+-+.|-.+.+
T Consensus 102 ~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv---~~TgvD~LAvsiGt~HG~Y~~ 178 (276)
T cd00947 102 HLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFV---EETGVDALAVAIGTSHGAYKG 178 (276)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHH---HHHCCCEEEeccCccccccCC
Confidence 34577888899999999999999877774 2111000 13578899999999 998888899999999987755
No 297
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=75.48 E-value=45 Score=28.84 Aligned_cols=72 Identities=8% Similarity=-0.008 Sum_probs=55.2
Q ss_pred CcchHHHHHHHHHHHHHHHhhCCcEEEEcc--CCCCCC------CCcccCCHHHHHHHHHHHhhcCCCceeEeeeccccc
Q psy13372 122 SEDPYTTLKENLIYACAELERHSLTALIEP--VNQHSV------PGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQ 193 (273)
Q Consensus 122 ~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~--~~~~~~------~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~ 193 (273)
+.-.++.-++..++++++|+++||.+--|- ++.... ...+.++++++.+++ ++.+-..+.+.+-+.|-.
T Consensus 106 S~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv---~~TgvD~LAvaiGt~HG~ 182 (284)
T PRK12737 106 SHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFV---ERTGIDSLAVAIGTAHGL 182 (284)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHH---HHhCCCEEeeccCccccc
Confidence 445688889999999999999999776664 211100 113478999999999 999888899999999987
Q ss_pred ccC
Q psy13372 194 RIC 196 (273)
Q Consensus 194 ~~~ 196 (273)
+.+
T Consensus 183 y~~ 185 (284)
T PRK12737 183 YKG 185 (284)
T ss_pred cCC
Confidence 654
No 298
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=75.45 E-value=54 Score=28.42 Aligned_cols=134 Identities=10% Similarity=-0.002 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCC---CCH----HHHHHHHHHcC--CeeEEEecCCccccCCCCCchhHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVG---VTL----EQLVAAQTRHG--LKQVLINTEVDENFGYAAVKGKESEFRASLEK 92 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~---~~~----~~~~~~l~~~g--L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (273)
.+.+.++++.+.|.++|=+.+..++ .+. +-++...+... +.|. .++. .+ ..+...+
T Consensus 22 ~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi-~gv~------~~--------~t~~ai~ 86 (294)
T TIGR02313 22 ALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFA-PGTG------AL--------NHDETLE 86 (294)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEE-EECC------cc--------hHHHHHH
Confidence 4677788889999999988865221 122 22223333333 3333 2221 11 1234556
Q ss_pred HHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHH
Q psy13372 93 TIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLI 172 (273)
Q Consensus 93 ~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li 172 (273)
.++.|+.+|+..+.+.+...-. -..+.++++++.+++... ++.+.+-|.+.. ....-+++...++.
T Consensus 87 ~a~~A~~~Gad~v~v~pP~y~~---------~~~~~l~~~f~~ia~a~~--~lpv~iYn~P~~---tg~~l~~~~l~~L~ 152 (294)
T TIGR02313 87 LTKFAEEAGADAAMVIVPYYNK---------PNQEALYDHFAEVADAVP--DFPIIIYNIPGR---AAQEIAPKTMARLR 152 (294)
T ss_pred HHHHHHHcCCCEEEEcCccCCC---------CCHHHHHHHHHHHHHhcc--CCCEEEEeCchh---cCcCCCHHHHHHHH
Confidence 7777899999998775432211 123677777877776531 678888886532 12344577777777
Q ss_pred HHHhhcCCCceeEeeec
Q psy13372 173 RELRAHGISNVQLQFDF 189 (273)
Q Consensus 173 ~~~~~~~~~~~g~~~D~ 189 (273)
+++ ||+.-.=|+
T Consensus 153 ---~~~--pnv~giK~s 164 (294)
T TIGR02313 153 ---KDC--PNIVGAKES 164 (294)
T ss_pred ---hhC--CCEEEEEeC
Confidence 654 776655554
No 299
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=75.35 E-value=44 Score=27.38 Aligned_cols=150 Identities=16% Similarity=0.153 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN 101 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG 101 (273)
+..+..+.+.+.|++.||+.+.-+ ...+.++++.++++ ++. ++. +.. + ++ ...+.|...|
T Consensus 21 ~a~~~~~al~~~Gi~~iEit~~t~-~a~~~i~~l~~~~~-~~~-vGA---GTV-l--~~-----------~~a~~a~~aG 80 (204)
T TIGR01182 21 DALPLAKALIEGGLRVLEVTLRTP-VALDAIRLLRKEVP-DAL-IGA---GTV-L--NP-----------EQLRQAVDAG 80 (204)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCc-cHHHHHHHHHHHCC-CCE-EEE---EeC-C--CH-----------HHHHHHHHcC
Confidence 445667778889999999998643 45566777777765 322 211 111 1 22 2345566789
Q ss_pred CCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCCC
Q psy13372 102 IPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGIS 181 (273)
Q Consensus 102 ~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 181 (273)
+++++.+ +. + .++.+.++++|+... |+ +.|+-|+.+.+ +.+.+
T Consensus 81 A~FivsP-~~---~------------------~~v~~~~~~~~i~~i---------PG--~~TptEi~~A~----~~Ga~ 123 (204)
T TIGR01182 81 AQFIVSP-GL---T------------------PELAKHAQDHGIPII---------PG--VATPSEIMLAL----ELGIT 123 (204)
T ss_pred CCEEECC-CC---C------------------HHHHHHHHHcCCcEE---------CC--CCCHHHHHHHH----HCCCC
Confidence 9999753 21 1 166788999999776 44 34677776666 34545
Q ss_pred ceeEeeecccccccC-CChHHHHHhcCCcceeEEeccCCCCCCCCCCCcccHHHHHHHHHHcCCC
Q psy13372 182 NVQLQFDFFNAQRIC-GDLTHTFGACRDLIGHVQIAQAPDRQEPHARGEIDYAYVFELLAREGYE 245 (273)
Q Consensus 182 ~~g~~~D~~h~~~~~-~~~~~~i~~~~~~i~~vHi~d~~~~~~~g~~G~id~~~i~~~L~~~gy~ 245 (273)
-+++-+ ....| .+..+.++...+.+.. -= + |-++...+-+.|+ .|+.
T Consensus 124 ~vKlFP----A~~~GG~~yikal~~plp~i~~---~p--------t-GGV~~~N~~~~l~-aGa~ 171 (204)
T TIGR01182 124 ALKLFP----AEVSGGVKMLKALAGPFPQVRF---CP--------T-GGINLANVRDYLA-APNV 171 (204)
T ss_pred EEEECC----chhcCCHHHHHHHhccCCCCcE---Ee--------c-CCCCHHHHHHHHh-CCCE
Confidence 555543 43333 3444444443343322 21 2 7788877777776 5544
No 300
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=75.11 E-value=54 Score=28.33 Aligned_cols=140 Identities=8% Similarity=0.015 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHcCCCeEEecCCC-C-CC---CHHHHHHHHHHcCCeeE-EEecCCccccCCCCCchhHHHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPP-V-GV---TLEQLVAAQTRHGLKQV-LINTEVDENFGYAAVKGKESEFRASLEKTIQ 95 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~-~-~~---~~~~~~~~l~~~gL~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (273)
++ +.+..+-++||++|.+.... + +. ..+++.+..+.+|+.+- .++.-.+...+. ... ......-..+.+
T Consensus 86 ~~-e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~-~~~---~~~~T~pe~a~~ 160 (283)
T PRK07998 86 TF-EDVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDH-VSE---ADCKTEPEKVKD 160 (283)
T ss_pred CH-HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccc-ccc---ccccCCHHHHHH
Confidence 55 45555669999999998652 1 12 24788888999999884 344321211110 000 111223445678
Q ss_pred HHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHH
Q psy13372 96 YACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIREL 175 (273)
Q Consensus 96 ~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~ 175 (273)
++++.|+..+-+-.|..-..... +.-. .+.|+++. +..++.+.++--+ ..+.++..+.+
T Consensus 161 Fv~~TgvD~LAvaiGt~HG~Y~~---p~l~----~~~l~~I~---~~~~vPLVlHGgS--------G~~~e~~~~ai--- 219 (283)
T PRK07998 161 FVERTGCDMLAVSIGNVHGLEDI---PRID----IPLLKRIA---EVSPVPLVIHGGS--------GIPPEILRSFV--- 219 (283)
T ss_pred HHHHhCcCeeehhccccccCCCC---CCcC----HHHHHHHH---hhCCCCEEEeCCC--------CCCHHHHHHHH---
Confidence 88889999887766654221100 1111 24444443 3458999988522 22344544444
Q ss_pred hhcCCCceeEeeecc
Q psy13372 176 RAHGISNVQLQFDFF 190 (273)
Q Consensus 176 ~~~~~~~~g~~~D~~ 190 (273)
+ . --.++++++-
T Consensus 220 ~-~--Gi~KiNi~Te 231 (283)
T PRK07998 220 N-Y--KVAKVNIASD 231 (283)
T ss_pred H-c--CCcEEEECHH
Confidence 2 2 3466777663
No 301
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=74.97 E-value=48 Score=27.66 Aligned_cols=104 Identities=10% Similarity=0.026 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCC--eeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGL--KQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACA 99 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 99 (273)
++++.++..+++|.+.|-++.... ..+.+..+.++++|+ +.- +.. +++. | ++.++..++...
T Consensus 79 ~P~~~i~~~~~aGad~It~H~Ea~-~~~~~~l~~Ik~~g~~~kaG-lal----nP~T---p------~~~i~~~l~~vD- 142 (228)
T PRK08091 79 DQFEVAKACVAAGADIVTLQVEQT-HDLALTIEWLAKQKTTVLIG-LCL----CPET---P------ISLLEPYLDQID- 142 (228)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCc-ccHHHHHHHHHHCCCCceEE-EEE----CCCC---C------HHHHHHHHhhcC-
Confidence 678899999999999999987643 456777888999998 442 211 1111 1 234444444221
Q ss_pred cCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 100 LNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 100 lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
-+-.+.+.||.-+. .-.....+.++++.++-.++|..+.||-
T Consensus 143 -~VLiMtV~PGfgGQ---------~f~~~~l~KI~~lr~~~~~~~~~~~IeV 184 (228)
T PRK08091 143 -LIQILTLDPRTGTK---------APSDLILDRVIQVENRLGNRRVEKLISI 184 (228)
T ss_pred -EEEEEEECCCCCCc---------cccHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 12234555554322 2344567778888888778887777776
No 302
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=74.81 E-value=52 Score=28.00 Aligned_cols=105 Identities=10% Similarity=-0.055 Sum_probs=66.7
Q ss_pred CHHHHHHHHHH--cCCCeEEecCCCCCCCHHHHHHHHHH--c-CCeeEEE-ecCCccccCCCCCchhHHHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAE--LGFRYIESWFPPVGVTLEQLVAAQTR--H-GLKQVLI-NTEVDENFGYAAVKGKESEFRASLEKTIQ 95 (273)
Q Consensus 22 ~~~~~l~~~~~--~G~~~vEl~~~~~~~~~~~~~~~l~~--~-gL~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (273)
++.+.++.+.+ .||.+|=+.. ..++..++.++. . ++.+.++ ++|. |.++.. .-..-++
T Consensus 27 ~I~~lc~eA~~~~~~faaVcV~P----~~v~~a~~~L~~~~~~~vkv~tVigFP~----G~~~t~--------~K~~Ea~ 90 (257)
T PRK05283 27 KVIALCHQAKTPVGNTAAICIYP----RFIPIARKTLREQGTPEIRIATVTNFPH----GNDDID--------IALAETR 90 (257)
T ss_pred HHHHHHHHHHhcCCCeeEEEECH----HHHHHHHHHhcccCCCCCeEEEEecCCC----CCCcHH--------HHHHHHH
Confidence 56777888888 5898887752 345666777764 2 4777764 3332 232211 1122344
Q ss_pred HHHHcCCCeEEe--cCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHh-hCCcEEEEcc
Q psy13372 96 YACALNIPAIHI--MSGKTESSRTQPIASEDPYTTLKENLIYACAELE-RHSLTALIEP 151 (273)
Q Consensus 96 ~a~~lG~~~i~~--~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~-~~gv~i~lE~ 151 (273)
.|-+.||.-+-+ ..|.. ....++.+.+-++++++.+. ..-+++.||+
T Consensus 91 ~Ai~~GAdEiD~Vinig~l---------k~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt 140 (257)
T PRK05283 91 AAIAYGADEVDVVFPYRAL---------MAGNEQVGFELVKACKEACAANVLLKVIIET 140 (257)
T ss_pred HHHHcCCCEEeeeccHHHH---------hCCcHHHHHHHHHHHHHHhCCCceEEEEEec
Confidence 556689998744 34444 23457788888888888886 3558999997
No 303
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=74.77 E-value=9 Score=24.83 Aligned_cols=44 Identities=11% Similarity=-0.019 Sum_probs=35.4
Q ss_pred CcccHHHHHHHHHHcCCCceEEEeeecCCChHHHHHHHHHhhccc
Q psy13372 228 GEIDYAYVFELLAREGYEGYVGLEYKPQGNTKEGLEEFLKTFDLK 272 (273)
Q Consensus 228 G~id~~~i~~~L~~~gy~g~~~lE~~~~~~~~~~~~~~~~~~~~~ 272 (273)
|.+....+++.+++.|++....-|+.......+..+ ..++.+++
T Consensus 13 ~~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~-~~~~~gi~ 56 (67)
T smart00481 13 GALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYK-AAKKAGIK 56 (67)
T ss_pred ccCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHH-HHHHcCCe
Confidence 889999999999999999888888876666666666 66766654
No 304
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=74.62 E-value=48 Score=27.47 Aligned_cols=103 Identities=16% Similarity=0.063 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN 101 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG 101 (273)
+.+..++..+++|.+.|.++.... ....++.+.++++|.+.-..- +++. | ++.++..++... -
T Consensus 72 ~p~~~i~~fa~agad~It~H~E~~-~~~~r~i~~Ik~~G~kaGv~l-----nP~T---p------~~~i~~~l~~vD--~ 134 (220)
T COG0036 72 NPDRYIEAFAKAGADIITFHAEAT-EHIHRTIQLIKELGVKAGLVL-----NPAT---P------LEALEPVLDDVD--L 134 (220)
T ss_pred CHHHHHHHHHHhCCCEEEEEeccC-cCHHHHHHHHHHcCCeEEEEE-----CCCC---C------HHHHHHHHhhCC--E
Confidence 678899999999999999997733 677888888999998876431 1111 1 233333333222 1
Q ss_pred CCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 102 IPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 102 ~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
+-.|.+.||.-+. .-.....+.++++..+..+.| .+.||-
T Consensus 135 VllMsVnPGfgGQ---------~Fi~~~l~Ki~~lr~~~~~~~-~~~IeV 174 (220)
T COG0036 135 VLLMSVNPGFGGQ---------KFIPEVLEKIRELRAMIDERL-DILIEV 174 (220)
T ss_pred EEEEeECCCCccc---------ccCHHHHHHHHHHHHHhcccC-CeEEEE
Confidence 2244555654322 234567777888888887777 888887
No 305
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=74.61 E-value=48 Score=27.45 Aligned_cols=140 Identities=14% Similarity=0.039 Sum_probs=0.0
Q ss_pred cCHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHc
Q psy13372 21 ANYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACAL 100 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l 100 (273)
.++++.++.+.+.|+++|-+. ....+.....+ ..+..+..--.-.. .-..| ..........++.|..+
T Consensus 21 ~d~~~~~~~~~~~g~~av~v~----~~~~~~~~~~~-~~~~~~i~~~~~~~----~i~~p---~~~~~~~~~~v~~a~~~ 88 (235)
T cd00958 21 EDPEETVKLAAEGGADAVALT----KGIARAYGREY-AGDIPLIVKLNGST----SLSPK---DDNDKVLVASVEDAVRL 88 (235)
T ss_pred cCHHHHHHHHHhcCCCEEEeC----hHHHHhccccc-CCCCcEEEEECCCC----CCCCC---CCCchhhhcCHHHHHHC
Q ss_pred CCCeE--EecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhc
Q psy13372 101 NIPAI--HIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAH 178 (273)
Q Consensus 101 G~~~i--~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~ 178 (273)
|+..+ .+..|..... ...+.+.++.+.++++|+.+.+|......|.+. ..+.++..+.++...+.
T Consensus 89 Ga~~v~~~~~~~~~~~~------------~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~-~~~~~~i~~~~~~a~~~ 155 (235)
T cd00958 89 GADAVGVTVYVGSEEER------------EMLEELARVAAEAHKYGLPLIAWMYPRGPAVKN-EKDPDLIAYAARIGAEL 155 (235)
T ss_pred CCCEEEEEEecCCchHH------------HHHHHHHHHHHHHHHcCCCEEEEEeccCCcccC-ccCHHHHHHHHHHHHHH
Q ss_pred CCCceeE
Q psy13372 179 GISNVQL 185 (273)
Q Consensus 179 ~~~~~g~ 185 (273)
+...+++
T Consensus 156 GaD~Ik~ 162 (235)
T cd00958 156 GADIVKT 162 (235)
T ss_pred CCCEEEe
No 306
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=74.51 E-value=57 Score=28.25 Aligned_cols=143 Identities=8% Similarity=0.005 Sum_probs=77.6
Q ss_pred cCHHHHHHHHHHcCCCeEEecCC---CCCCC---HHHHHHHHHHcCCeeEE-EecCCccccCCCCCchhHHHHHHHHHHH
Q psy13372 21 ANYLDKYRVAAELGFRYIESWFP---PVGVT---LEQLVAAQTRHGLKQVL-INTEVDENFGYAAVKGKESEFRASLEKT 93 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~~---~~~~~---~~~~~~~l~~~gL~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (273)
.+++. +..+-++||+.|.+... ++ .. .+++.+.....|+.+-. ++.-.+.+.+... ...+.....-..+
T Consensus 85 ~~~e~-i~~ai~~GftSVM~DgS~lp~e-eNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~--~~~~~~~T~pe~a 160 (284)
T PRK12857 85 TDFEQ-VMKCIRNGFTSVMIDGSKLPLE-ENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITV--DEREAAMTDPEEA 160 (284)
T ss_pred CCHHH-HHHHHHcCCCeEEEeCCCCCHH-HHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCc--ccchhhcCCHHHH
Confidence 45554 55666889999999975 22 22 47788888899988864 3321111111000 0111223345667
Q ss_pred HHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHH
Q psy13372 94 IQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIR 173 (273)
Q Consensus 94 i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~ 173 (273)
.++.++.|+..+-+-.|..=.....+ +.-. .+.|+++.+ ..++.++++--+ ..+.++..+.+
T Consensus 161 ~~Fv~~TgvD~LAvaiGt~HG~y~~~--p~Ld----~~~L~~i~~---~~~vPLVlHGgS--------G~~~e~~~~ai- 222 (284)
T PRK12857 161 RRFVEETGVDALAIAIGTAHGPYKGE--PKLD----FDRLAKIKE---LVNIPIVLHGSS--------GVPDEAIRKAI- 222 (284)
T ss_pred HHHHHHHCCCEEeeccCccccccCCC--CcCC----HHHHHHHHH---HhCCCEEEeCCC--------CCCHHHHHHHH-
Confidence 77788889999877666541110000 2222 334444433 347888888422 23345545555
Q ss_pred HHhhcCCCceeEeeecc
Q psy13372 174 ELRAHGISNVQLQFDFF 190 (273)
Q Consensus 174 ~~~~~~~~~~g~~~D~~ 190 (273)
+ . --.++++++.
T Consensus 223 --~-~--Gi~KiNi~T~ 234 (284)
T PRK12857 223 --S-L--GVRKVNIDTN 234 (284)
T ss_pred --H-c--CCeEEEeCcH
Confidence 2 2 2356666663
No 307
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=74.36 E-value=51 Score=28.53 Aligned_cols=72 Identities=11% Similarity=0.064 Sum_probs=54.4
Q ss_pred CcchHHHHHHHHHHHHHHHhhCCcEEEEcc--CCCCCC------CCcccCCHHHHHHHHHHHhhcCCCceeEeeeccccc
Q psy13372 122 SEDPYTTLKENLIYACAELERHSLTALIEP--VNQHSV------PGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQ 193 (273)
Q Consensus 122 ~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~--~~~~~~------~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~ 193 (273)
+.-.++.-++..++++++|+++||.+--|- ++.... .....++++++.+++ ++.+-+.+.+.+-+.|-.
T Consensus 106 S~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~ 182 (284)
T PRK09195 106 SHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFV---EATGIDSLAVAIGTAHGM 182 (284)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHH---HHHCcCEEeeccCccccc
Confidence 334578889999999999999998776664 211100 113468999999999 998888899999999987
Q ss_pred ccC
Q psy13372 194 RIC 196 (273)
Q Consensus 194 ~~~ 196 (273)
+.+
T Consensus 183 y~~ 185 (284)
T PRK09195 183 YKG 185 (284)
T ss_pred cCC
Confidence 654
No 308
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=74.35 E-value=60 Score=30.05 Aligned_cols=113 Identities=15% Similarity=0.045 Sum_probs=65.1
Q ss_pred HHHHHHHHHcCCCeEEecCC-CC---------CCC---HHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFP-PV---------GVT---LEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASL 90 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~-~~---------~~~---~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (273)
++.++.++++|+..|.+... .+ ..+ ..+..+.++++|+...++..-.+ .++. +.+.+
T Consensus 151 ~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~G-lPgq---------t~e~~ 220 (453)
T PRK09249 151 LEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYG-LPKQ---------TPESF 220 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEcc-CCCC---------CHHHH
Confidence 68899999999999999853 11 122 33445667788884333332111 1111 24678
Q ss_pred HHHHHHHHHcCCCeEEecCCCC-C----CCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcE
Q psy13372 91 EKTIQYACALNIPAIHIMSGKT-E----SSRTQPIASEDPYTTLKENLIYACAELERHSLT 146 (273)
Q Consensus 91 ~~~i~~a~~lG~~~i~~~~G~~-~----~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~ 146 (273)
++.++.+.++|+..+.+.+-.. + .....+....-..+...+.+..+.+...+.|..
T Consensus 221 ~~~l~~~~~l~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~ 281 (453)
T PRK09249 221 ARTLEKVLELRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQ 281 (453)
T ss_pred HHHHHHHHhcCCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCE
Confidence 8899999999999998864210 0 000000000112344455566777788888853
No 309
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=74.31 E-value=48 Score=27.37 Aligned_cols=73 Identities=11% Similarity=0.089 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhcCCCceeEeeecccccccC-CChHHHHH----hcC-CcceeEEeccCCCCCCCCCCCcc-cHHHHHH
Q psy13372 165 FRVAERLIRELRAHGISNVQLQFDFFNAQRIC-GDLTHTFG----ACR-DLIGHVQIAQAPDRQEPHARGEI-DYAYVFE 237 (273)
Q Consensus 165 ~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~-~~~~~~i~----~~~-~~i~~vHi~d~~~~~~~g~~G~i-d~~~i~~ 237 (273)
...+.+++ ++.+-..+.+.+|+.-|.... .+....++ ... ..|..+|... . .++ -++.++.
T Consensus 141 ~~~~~~~l---~~~Gy~~v~w~v~~~Dw~~~~~~~~~~~~~~v~~~~~~g~IiLlHd~~--------~-~t~~aL~~ii~ 208 (224)
T TIGR02884 141 SERTLAYT---KELGYYTVFWSLAFKDWKVDEQPGWQYAYKQIMKKIHPGAILLLHAVS--------K-DNAEALDKIIK 208 (224)
T ss_pred CHHHHHHH---HHcCCcEEeccccCcccCCCCCCCHHHHHHHHHhcCCCCcEEEEECCC--------C-CHHHHHHHHHH
Confidence 45567777 887766677777776665321 22232233 322 3466777431 1 223 4789999
Q ss_pred HHHHcCCCceEEE
Q psy13372 238 LLAREGYEGYVGL 250 (273)
Q Consensus 238 ~L~~~gy~g~~~l 250 (273)
.|++.||. .+++
T Consensus 209 ~lk~~Gy~-fvtl 220 (224)
T TIGR02884 209 DLKEQGYT-FKSL 220 (224)
T ss_pred HHHHCCCE-EEEh
Confidence 99999997 4444
No 310
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=74.12 E-value=44 Score=28.16 Aligned_cols=111 Identities=11% Similarity=0.049 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCCCC-CCCCCCCCCCcchHHHHHHHHHHHHH--HHhhCCcEEEEccCCCCCCCC
Q psy13372 83 ESEFRASLEKTIQYACALNIPAIHIMSGKT-ESSRTQPIASEDPYTTLKENLIYACA--ELERHSLTALIEPVNQHSVPG 159 (273)
Q Consensus 83 ~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~~~~~~~~~~~~~~~~~~l~~l~~--~a~~~gv~i~lE~~~~~~~~~ 159 (273)
.....+.+...++.|..+|++.+++..-.. +..+ ++...+.+.+.+.+... ...+.||++-+=- . -.
T Consensus 36 H~~G~~~l~~i~~~~~~~gI~~lT~YaFS~EN~kR-----~~~Ev~~Lm~l~~~~l~~~~~~~~~irir~iG--~---~~ 105 (242)
T PRK14838 36 HQAGAETVHIITEEAARLGVKFLTLYTFSTENWNR-----PSDEVAALMSLLLDSIEEETFMKNNIRFRIIG--D---IA 105 (242)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeechhhcCC-----CHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEe--C---hh
Confidence 445678899999999999999999975433 2222 33444444444433332 3567788876542 1 11
Q ss_pred cccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhc
Q psy13372 160 YYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGAC 206 (273)
Q Consensus 160 ~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~ 206 (273)
.+ +++..+.+++.+.....+=++++.++-.+....++.++++.+
T Consensus 106 ~L---p~~l~~~i~~~e~~T~~~~~~~lnia~~Yggr~EI~~A~~~~ 149 (242)
T PRK14838 106 KL---PEEVQERLNECEEHTAKNTGMCLVLALSYSSRWEITEATRQI 149 (242)
T ss_pred hC---CHHHHHHHHHHHHHhcCCCceEEEEeecCCCHHHHHHHHHHH
Confidence 22 344444443335554455566665554443333455555544
No 311
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=73.80 E-value=47 Score=27.01 Aligned_cols=99 Identities=15% Similarity=0.009 Sum_probs=59.7
Q ss_pred cCHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHc
Q psy13372 21 ANYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACAL 100 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l 100 (273)
....+..+.+.+.|++.+|+.+.-. ...+.++.+.++++=-+...++ . + ++ ..++.|...
T Consensus 20 ~~a~~~~~al~~gGi~~iEiT~~t~-~a~~~I~~l~~~~p~~~vGAGT-----V-~--~~-----------e~a~~a~~a 79 (196)
T PF01081_consen 20 EDAVPIAEALIEGGIRAIEITLRTP-NALEAIEALRKEFPDLLVGAGT-----V-L--TA-----------EQAEAAIAA 79 (196)
T ss_dssp GGHHHHHHHHHHTT--EEEEETTST-THHHHHHHHHHHHTTSEEEEES----------SH-----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCc-cHHHHHHHHHHHCCCCeeEEEe-----c-c--CH-----------HHHHHHHHc
Confidence 3667788888999999999998743 3456666666665421222221 1 1 12 245566778
Q ss_pred CCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHH
Q psy13372 101 NIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLI 172 (273)
Q Consensus 101 G~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li 172 (273)
|+++++.+. . -.++.++++++|+.+. |+ ..|+.|+.+.+
T Consensus 80 GA~FivSP~--~--------------------~~~v~~~~~~~~i~~i---------PG--~~TptEi~~A~ 118 (196)
T PF01081_consen 80 GAQFIVSPG--F--------------------DPEVIEYAREYGIPYI---------PG--VMTPTEIMQAL 118 (196)
T ss_dssp T-SEEEESS------------------------HHHHHHHHHHTSEEE---------EE--ESSHHHHHHHH
T ss_pred CCCEEECCC--C--------------------CHHHHHHHHHcCCccc---------CC--cCCHHHHHHHH
Confidence 999999752 1 1256788889999887 33 34666766666
No 312
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=73.75 E-value=11 Score=33.08 Aligned_cols=65 Identities=9% Similarity=0.093 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHcCCCeEEecCCCC-CCC---CCCCCCCcc---hHHHHHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 87 RASLEKTIQYACALNIPAIHIMSGKT-ESS---RTQPIASED---PYTTLKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 87 ~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~---~~~~~~~~~---~~~~~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
++.+++.|+..+..+.+.+++|...- +.. ...|.-++. .--...+-+++++++|+++||+|..|-
T Consensus 17 ~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 17 VAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEI 88 (311)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEee
Confidence 67899999999999999999985321 110 000110100 012456779999999999999999995
No 313
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=73.74 E-value=57 Score=27.96 Aligned_cols=16 Identities=13% Similarity=0.061 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHcCCC
Q psy13372 88 ASLEKTIQYACALNIP 103 (273)
Q Consensus 88 ~~~~~~i~~a~~lG~~ 103 (273)
+...++++.+++.|.+
T Consensus 158 ~~~~~ai~~l~~~Gi~ 173 (296)
T TIGR00433 158 DDRVDTLENAKKAGLK 173 (296)
T ss_pred HHHHHHHHHHHHcCCE
Confidence 3444555555555654
No 314
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=73.72 E-value=60 Score=28.14 Aligned_cols=72 Identities=10% Similarity=0.070 Sum_probs=54.5
Q ss_pred CcchHHHHHHHHHHHHHHHhhCCcEEEEcc--CCCCCC------CCcccCCHHHHHHHHHHHhhcCCCceeEeeeccccc
Q psy13372 122 SEDPYTTLKENLIYACAELERHSLTALIEP--VNQHSV------PGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQ 193 (273)
Q Consensus 122 ~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~--~~~~~~------~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~ 193 (273)
+.-.++.-++..++++++|+.+||.+--|- +..... ...+.++++++.+++ ++.+-+.+.+.+-+.|-.
T Consensus 106 S~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~ 182 (286)
T PRK12738 106 SHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFV---ELTGVDSLAVAIGTAHGL 182 (286)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHH---HHhCCCEEEeccCcccCC
Confidence 344578889999999999999998776664 211100 113477999999999 999888899999999987
Q ss_pred ccC
Q psy13372 194 RIC 196 (273)
Q Consensus 194 ~~~ 196 (273)
+.+
T Consensus 183 Y~~ 185 (286)
T PRK12738 183 YSK 185 (286)
T ss_pred CCC
Confidence 654
No 315
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=73.70 E-value=51 Score=30.05 Aligned_cols=98 Identities=8% Similarity=0.036 Sum_probs=53.2
Q ss_pred HHHHHHHHHcC--CeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC--CCeEEecCCCCCCCCCCC-----C
Q psy13372 50 EQLVAAQTRHG--LKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN--IPAIHIMSGKTESSRTQP-----I 120 (273)
Q Consensus 50 ~~~~~~l~~~g--L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG--~~~i~~~~G~~~~~~~~~-----~ 120 (273)
.++.+.+++.| +++..++++.+.+ . .+.+.....++.+.+.++.+.+.| .+.+-+. |+++...... .
T Consensus 172 ~~~~~~~~~~~~~l~l~GlH~H~GSq--~-~~~~~~~~~~~~~~~~~~~~~~~g~~l~~iDiG-GGf~v~y~~~~~~~~~ 247 (409)
T cd06830 172 LEVVEKLKEAGMLDRLKLLHFHIGSQ--I-TDIRRIKSALREAARIYAELRKLGANLRYLDIG-GGLGVDYDGSRSSSDS 247 (409)
T ss_pred HHHHHHHHhcCcCCeEEEEEEecCCC--C-CCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEcC-CCcccCCCCCcCcccC
Confidence 44555567764 6788887765421 1 355666666666666666666655 4456664 3343221100 0
Q ss_pred CCcchHHHHHHHHHHHHH-HHhhCC---cEEEEcc
Q psy13372 121 ASEDPYTTLKENLIYACA-ELERHS---LTALIEP 151 (273)
Q Consensus 121 ~~~~~~~~~~~~l~~l~~-~a~~~g---v~i~lE~ 151 (273)
+..-.++.+.+.+.+..+ +..+++ .++.+||
T Consensus 248 ~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~l~~Ep 282 (409)
T cd06830 248 SFNYSLEEYANDIVKTVKEICDEAGVPHPTIVTES 282 (409)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHcCCCCCEEEEec
Confidence 012245666666665543 334444 5899998
No 316
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=73.65 E-value=21 Score=32.32 Aligned_cols=114 Identities=10% Similarity=-0.101 Sum_probs=63.9
Q ss_pred HHHHHHHHHHcCCCeEEecC----CCC--CCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCC-CCCccc
Q psy13372 90 LEKTIQYACALNIPAIHIMS----GKT--ESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHS-VPGYYL 162 (273)
Q Consensus 90 ~~~~i~~a~~lG~~~i~~~~----G~~--~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~-~~~~~~ 162 (273)
-.+.+++++..|++++++.+ |.- +...+.-....... =.+-++++++.++++|+++++---.... +|....
T Consensus 83 ~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~p--krDiv~el~~A~rk~Glk~G~Y~S~~DW~~p~y~~ 160 (384)
T smart00812 83 PEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGP--KRDLVGELADAVRKRGLKFGLYHSLFDWFNPLYAG 160 (384)
T ss_pred HHHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCC--CcchHHHHHHHHHHcCCeEEEEcCHHHhCCCcccc
Confidence 45789999999999998843 322 11110000001111 1366889999999999999985311011 121100
Q ss_pred -----------CC--------HHHHHHHHHHHhhcCCCceeEeeecccccccC----CChHHHHHhcCCcc
Q psy13372 163 -----------SS--------FRVAERLIRELRAHGISNVQLQFDFFNAQRIC----GDLTHTFGACRDLI 210 (273)
Q Consensus 163 -----------~~--------~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~----~~~~~~i~~~~~~i 210 (273)
.. ..++.+|+ ...+ | -.+-+|.+...... ..+.+.++.+.|.+
T Consensus 161 ~~~~~~~~~~~~~~~~y~~~~~~Ql~ELi---t~Yg-p-d~lWfD~~~~~~~~~~~~~~l~~~~~~~qP~~ 226 (384)
T smart00812 161 PTSSDEDPDNWPRFQEFVDDWLPQLRELV---TRYK-P-DLLWFDGGWEAPDDYWRSKEFLAWLYNLSPVK 226 (384)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHH---hcCC-C-ceEEEeCCCCCccchhcHHHHHHHHHHhCCCC
Confidence 00 34555666 7776 5 78899986532221 23566677777754
No 317
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=73.61 E-value=58 Score=27.97 Aligned_cols=121 Identities=9% Similarity=-0.020 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCC---CCH---HHHH-HHHHHcC--CeeEEEecCCccccCCCCCchhHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVG---VTL---EQLV-AAQTRHG--LKQVLINTEVDENFGYAAVKGKESEFRASLEK 92 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~---~~~---~~~~-~~l~~~g--L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (273)
.+...++++.+.|.++|=+.+..++ .+. .++. ...+..+ +.+.. ++. .. ..+...+
T Consensus 20 ~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~-gv~------~~--------s~~~~i~ 84 (285)
T TIGR00674 20 ALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIA-GTG------SN--------ATEEAIS 84 (285)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEE-eCC------Cc--------cHHHHHH
Confidence 4677788888999999998864221 122 2222 2233322 33332 211 10 1345666
Q ss_pred HHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHH
Q psy13372 93 TIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLI 172 (273)
Q Consensus 93 ~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li 172 (273)
.++.|+.+|+..+.+.+...-.. .-+.++++++++++. .++.+.+-|.+.. ....-+++...++.
T Consensus 85 ~a~~a~~~Gad~v~v~pP~y~~~---------~~~~i~~~~~~i~~~---~~~pi~lYn~P~~---tg~~l~~~~l~~L~ 149 (285)
T TIGR00674 85 LTKFAEDVGADGFLVVTPYYNKP---------TQEGLYQHFKAIAEE---VDLPIILYNVPSR---TGVSLYPETVKRLA 149 (285)
T ss_pred HHHHHHHcCCCEEEEcCCcCCCC---------CHHHHHHHHHHHHhc---CCCCEEEEECcHH---hcCCCCHHHHHHHH
Confidence 78888999999887754322111 135667777777664 4677888886421 12233566556665
No 318
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=73.36 E-value=57 Score=27.79 Aligned_cols=95 Identities=15% Similarity=0.072 Sum_probs=60.1
Q ss_pred HHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCCC--eEEecCCCCCCCCCCCCCCcchH
Q psy13372 49 LEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIP--AIHIMSGKTESSRTQPIASEDPY 126 (273)
Q Consensus 49 ~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~--~i~~~~G~~~~~~~~~~~~~~~~ 126 (273)
.+++...++++|..++.++... .|. |...+..++.+++.++.|.+.|.+ .|.+-||..+... ....-
T Consensus 105 ~~~~~~l~~~~g~~vv~m~~~~---~g~---P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~~~-----~~~~~ 173 (261)
T PRK07535 105 LEVVLPLVKKYNAPVVALTMDD---TGI---PKDAEDRLAVAKELVEKADEYGIPPEDIYIDPLVLPLSA-----AQDAG 173 (261)
T ss_pred CHHHHHHHHHhCCCEEEEecCC---CCC---CCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCcccC-----ChHHH
Confidence 4577888999999998876531 222 334455578889999999999995 7888777653221 11222
Q ss_pred HHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 127 TTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 127 ~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
-.+.+.++.+.+..-.+.+.+++=|.+.
T Consensus 174 ~~~l~~i~~l~~~~pg~p~l~G~Sn~Sf 201 (261)
T PRK07535 174 PEVLETIRRIKELYPKVHTTCGLSNISF 201 (261)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeCCCcc
Confidence 2334455554443324557788877653
No 319
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=73.30 E-value=49 Score=27.02 Aligned_cols=98 Identities=14% Similarity=0.089 Sum_probs=55.2
Q ss_pred HHHHHHHHHHcCCCeEEecCC--CCCCCHHHHHHHHHHc-CCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHH
Q psy13372 23 YLDKYRVAAELGFRYIESWFP--PVGVTLEQLVAAQTRH-GLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACA 99 (273)
Q Consensus 23 ~~~~l~~~~~~G~~~vEl~~~--~~~~~~~~~~~~l~~~-gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 99 (273)
+.+-++.++++|.+++-+-.- ....+.+.++++++.. |+.++- |-.++ ...+ ..++++....
T Consensus 74 M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tF-HRAfD----~~~d----------~~~al~~L~~ 138 (201)
T PF03932_consen 74 MKEDIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAGGMPVTF-HRAFD----EVPD----------PEEALEQLIE 138 (201)
T ss_dssp HHHHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHTTSEEEE--GGGG----GSST----------HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcCCCeEEE-eCcHH----HhCC----------HHHHHHHHHh
Confidence 455577889999999999852 2246777777777755 566654 33221 1122 2345666677
Q ss_pred cCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEE
Q psy13372 100 LNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTAL 148 (273)
Q Consensus 100 lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~ 148 (273)
+|.++|-+. |..+.. .+ -++.|+++++.++. ++.|.
T Consensus 139 lG~~rVLTS-Gg~~~a-------~~----g~~~L~~lv~~a~~-~i~Im 174 (201)
T PF03932_consen 139 LGFDRVLTS-GGAPTA-------LE----GIENLKELVEQAKG-RIEIM 174 (201)
T ss_dssp HT-SEEEES-TTSSST-------TT----CHHHHHHHHHHHTT-SSEEE
T ss_pred cCCCEEECC-CCCCCH-------HH----HHHHHHHHHHHcCC-CcEEE
Confidence 899998875 433221 12 24667778777664 45544
No 320
>PLN02905 beta-amylase
Probab=73.22 E-value=18 Score=34.57 Aligned_cols=46 Identities=11% Similarity=-0.020 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCC-----------CCCHHHHHHHHHHcCCeeEEEe
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPV-----------GVTLEQLVAAQTRHGLKQVLIN 67 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~-----------~~~~~~~~~~l~~~gL~i~~~~ 67 (273)
.+...|+.++.+|.+||++..+++ -....++.++++++||++..+-
T Consensus 287 al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKlqvVM 343 (702)
T PLN02905 287 GLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQVVM 343 (702)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEE
Confidence 588899999999999999885432 1225899999999999997543
No 321
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=73.22 E-value=48 Score=28.04 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=56.6
Q ss_pred HHHHHHHHHHcCCCeEEecC--CCCCCCHHHHHHHHHHcC-CeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHH
Q psy13372 23 YLDKYRVAAELGFRYIESWF--PPVGVTLEQLVAAQTRHG-LKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACA 99 (273)
Q Consensus 23 ~~~~l~~~~~~G~~~vEl~~--~~~~~~~~~~~~~l~~~g-L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 99 (273)
..+-++.++++|.+||=+-. +....+.+.++++++..+ +.++ +|-.++ ...+ ..++++....
T Consensus 75 M~~di~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a~~~~vT-FHRAfD----~~~d----------~~~al~~l~~ 139 (248)
T PRK11572 75 MLEDIATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAAGPLAVT-FHRAFD----MCAN----------PLNALKQLAD 139 (248)
T ss_pred HHHHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhcCCceE-Eechhh----ccCC----------HHHHHHHHHH
Confidence 34457788999999998875 222466777777777665 5555 332211 1111 2246777778
Q ss_pred cCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHh
Q psy13372 100 LNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELE 141 (273)
Q Consensus 100 lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~ 141 (273)
+|+.+|-+. |..+. ...-++.|+++.+.+.
T Consensus 140 lG~~rILTS-Gg~~~-----------a~~g~~~L~~lv~~a~ 169 (248)
T PRK11572 140 LGVARILTS-GQQQD-----------AEQGLSLIMELIAASD 169 (248)
T ss_pred cCCCEEECC-CCCCC-----------HHHHHHHHHHHHHhcC
Confidence 899998875 43311 2244666777777665
No 322
>PRK05826 pyruvate kinase; Provisional
Probab=73.21 E-value=44 Score=31.10 Aligned_cols=101 Identities=15% Similarity=0.143 Sum_probs=64.1
Q ss_pred HHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCC-eeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCC
Q psy13372 24 LDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGL-KQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNI 102 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~ 102 (273)
.+.++++.+.|+++|-+.+-....+++++++.++++|- .+..+.- -|. ..+++++...++. +
T Consensus 176 ~~~i~~ald~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~iiak-----------IEt-~eav~nldeI~~~-----~ 238 (465)
T PRK05826 176 KADIKFAAEQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKIIAK-----------IER-AEAVDNIDEIIEA-----S 238 (465)
T ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceEEEE-----------EcC-HHHHHhHHHHHHH-----c
Confidence 44578899999999999876544678888999988875 4332211 011 1245566666554 5
Q ss_pred CeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEE
Q psy13372 103 PAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALI 149 (273)
Q Consensus 103 ~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~l 149 (273)
..+-+.+|..+... ..+.+....+++...++++|..+.+
T Consensus 239 DgImIgrgDLg~el--------g~~~v~~~qk~Ii~~c~~~gKpvi~ 277 (465)
T PRK05826 239 DGIMVARGDLGVEI--------PDEEVPGLQKKIIRKAREAGKPVIT 277 (465)
T ss_pred CEEEECcchhhhhc--------CcHhHHHHHHHHHHHHHHcCCCEEE
Confidence 67777667665431 1334555667777777777765443
No 323
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=73.07 E-value=61 Score=27.98 Aligned_cols=133 Identities=14% Similarity=0.007 Sum_probs=74.6
Q ss_pred CHHHHHHHHHH-cCCCeEEecCCCCC---CCH----HHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAE-LGFRYIESWFPPVG---VTL----EQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKT 93 (273)
Q Consensus 22 ~~~~~l~~~~~-~G~~~vEl~~~~~~---~~~----~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (273)
.+.+.++++.+ .|.++|=+.+..++ .+. +-++..++..+=++..+.. .+.. ..+...+.
T Consensus 25 ~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viag-----vg~~--------~t~~ai~~ 91 (293)
T PRK04147 25 GLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQ-----VGSV--------NTAEAQEL 91 (293)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEec-----CCCC--------CHHHHHHH
Confidence 47778888998 99999998875221 122 2223334443323322211 1111 12455667
Q ss_pred HHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHH
Q psy13372 94 IQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIR 173 (273)
Q Consensus 94 i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~ 173 (273)
++.|+++|+..+.+.+...-.. + .+.++++++++++. .++.+.+-|.+.. ....-+++...++.
T Consensus 92 a~~a~~~Gad~v~v~~P~y~~~------~---~~~l~~~f~~va~a---~~lPv~iYn~P~~---tg~~l~~~~l~~L~- 155 (293)
T PRK04147 92 AKYATELGYDAISAVTPFYYPF------S---FEEICDYYREIIDS---ADNPMIVYNIPAL---TGVNLSLDQFNELF- 155 (293)
T ss_pred HHHHHHcCCCEEEEeCCcCCCC------C---HHHHHHHHHHHHHh---CCCCEEEEeCchh---hccCCCHHHHHHHh-
Confidence 7888999999987765433111 1 25667777776654 5678888885421 12334566555555
Q ss_pred HHhhcCCCceeEeee
Q psy13372 174 ELRAHGISNVQLQFD 188 (273)
Q Consensus 174 ~~~~~~~~~~g~~~D 188 (273)
+ +||+--.=|
T Consensus 156 --~---~pnvvgiK~ 165 (293)
T PRK04147 156 --T---LPKVIGVKQ 165 (293)
T ss_pred --c---CCCEEEEEe
Confidence 3 377544444
No 324
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=72.95 E-value=35 Score=28.91 Aligned_cols=104 Identities=23% Similarity=0.135 Sum_probs=60.8
Q ss_pred HHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHH
Q psy13372 54 AAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENL 133 (273)
Q Consensus 54 ~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l 133 (273)
..+++.|...+.++-.. -...+.+.-+.+.+-+..|.+.|-..|.+ .|.....+. ..+..+.+.+.+
T Consensus 82 ~mL~d~G~~~viiGHSE--------RR~~~~E~d~~i~~K~~aa~~~Gl~pIlC-vGEtl~~re----ag~t~~v~~~Ql 148 (251)
T COG0149 82 EMLKDLGAKYVLIGHSE--------RRLYFGETDELIAKKVKAAKEAGLTPILC-VGETLEERE----AGKTLEVLKRQL 148 (251)
T ss_pred HHHHHcCCCEEEECccc--------cccccccchHHHHHHHHHHHHCCCeEEEE-cCCCHHHHh----ccChHHHHHHHH
Confidence 44566666666554221 11112223345667888889999986665 465433322 455666666777
Q ss_pred HHHHHHHhh-CCcEEEEccCCCCCCCCcccCCHHHHHHHH
Q psy13372 134 IYACAELER-HSLTALIEPVNQHSVPGYYLSSFRVAERLI 172 (273)
Q Consensus 134 ~~l~~~a~~-~gv~i~lE~~~~~~~~~~~~~~~~~~~~li 172 (273)
+..+..... .++.|++||.+-. ......|++++..+.
T Consensus 149 ~~~l~~l~~~~~~vIAYEPvWAI--GTG~~at~~~a~~v~ 186 (251)
T COG0149 149 AAALAALSPEANIVIAYEPVWAI--GTGKSASPADAEEVH 186 (251)
T ss_pred HHHHhhcCcccCeEEEECCHHHh--cCCCCCCHHHHHHHH
Confidence 666655443 6799999996532 233556666665555
No 325
>PRK11165 diaminopimelate decarboxylase; Provisional
Probab=72.69 E-value=72 Score=29.21 Aligned_cols=94 Identities=19% Similarity=0.111 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCC--CeEEecCCCCCCCCCCCCCCcchH
Q psy13372 49 LEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNI--PAIHIMSGKTESSRTQPIASEDPY 126 (273)
Q Consensus 49 ~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~--~~i~~~~G~~~~~~~~~~~~~~~~ 126 (273)
...+.+.+++.+|++..++++.+. +. +. +...+..+.+++.+..+|. +.|.+..| ++.... +....-.+
T Consensus 171 ~~~~~~~~~~~~l~l~GlH~H~GS--~~--~~---~~~~~~~~~l~~~~~~~g~~~~~IdiGGG-f~~~y~-~~~~~~d~ 241 (420)
T PRK11165 171 LPAALAVIQRYGLKLVGIHMHIGS--GV--DY---GHLEQVCGAMVRQVIELGQDIEAISAGGG-LSIPYR-EGEEPVDT 241 (420)
T ss_pred HHHHHHHHHhCCCcEEEEEEeccC--CC--Ch---HHHHHHHHHHHHHHHHhCCCCcEEEeCCC-cccCCC-CCCCCCCH
Confidence 345566677789999988876542 11 23 3344556667777888774 45666433 332211 00011234
Q ss_pred HHHHHHHHHHHHHHh---hCCcEEEEcc
Q psy13372 127 TTLKENLIYACAELE---RHSLTALIEP 151 (273)
Q Consensus 127 ~~~~~~l~~l~~~a~---~~gv~i~lE~ 151 (273)
+.+.+.+..+.+... ..+++|.+||
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~l~~EP 269 (420)
T PRK11165 242 EHYFGLWDAARKRIARHLGHPVKLEIEP 269 (420)
T ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEcc
Confidence 555555544443322 2468999998
No 326
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=72.68 E-value=53 Score=27.07 Aligned_cols=147 Identities=16% Similarity=0.132 Sum_probs=84.8
Q ss_pred CHHHH---HHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHH
Q psy13372 22 NYLDK---YRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYAC 98 (273)
Q Consensus 22 ~~~~~---l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~ 98 (273)
+.++. .+.+.+.|++.||+.+... ...+.++++.++++ ++. ++. + -. + ++ ..++.|.
T Consensus 25 ~~~~a~~i~~al~~~Gi~~iEitl~~~-~~~~~I~~l~~~~p-~~~-IGA--G-TV-l--~~-----------~~a~~a~ 84 (212)
T PRK05718 25 KLEDAVPLAKALVAGGLPVLEVTLRTP-AALEAIRLIAKEVP-EAL-IGA--G-TV-L--NP-----------EQLAQAI 84 (212)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCc-cHHHHHHHHHHHCC-CCE-EEE--e-ec-c--CH-----------HHHHHHH
Confidence 55554 5566777999999997644 45666777666665 322 211 0 11 1 11 3466777
Q ss_pred HcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhc
Q psy13372 99 ALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAH 178 (273)
Q Consensus 99 ~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~ 178 (273)
..|+++++.+. .. .++.+.+.++||.+. |+ ..|+.++.+.. +.
T Consensus 85 ~aGA~FivsP~-~~---------------------~~vi~~a~~~~i~~i---------PG--~~TptEi~~a~----~~ 127 (212)
T PRK05718 85 EAGAQFIVSPG-LT---------------------PPLLKAAQEGPIPLI---------PG--VSTPSELMLGM----EL 127 (212)
T ss_pred HcCCCEEECCC-CC---------------------HHHHHHHHHcCCCEe---------CC--CCCHHHHHHHH----HC
Confidence 89999999752 11 034456666777766 33 33566755544 67
Q ss_pred CCCceeEeeecccccccCCChHHHHHhcCCcceeEEeccCCCCCCCCCCCcccHHHHHHHHH
Q psy13372 179 GISNVQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAPDRQEPHARGEIDYAYVFELLA 240 (273)
Q Consensus 179 ~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~~vHi~d~~~~~~~g~~G~id~~~i~~~L~ 240 (273)
+.+-+++ |+ ....++ .++++.+..-+.++.+.= . |-++...+-+.|+
T Consensus 128 Ga~~vKl-FP---a~~~gg--~~~lk~l~~p~p~~~~~p--------t-GGV~~~ni~~~l~ 174 (212)
T PRK05718 128 GLRTFKF-FP---AEASGG--VKMLKALAGPFPDVRFCP--------T-GGISPANYRDYLA 174 (212)
T ss_pred CCCEEEE-cc---chhccC--HHHHHHHhccCCCCeEEE--------e-CCCCHHHHHHHHh
Confidence 7677777 44 222221 344555444344444442 2 7788877777776
No 327
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=72.49 E-value=32 Score=25.08 Aligned_cols=45 Identities=22% Similarity=0.185 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCC----CCHHHHHHHHHHcCCeeEEE
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVG----VTLEQLVAAQTRHGLKQVLI 66 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~----~~~~~~~~~l~~~gL~i~~~ 66 (273)
.-.+-++.+++.||+.|=-..|.++ -....++++.+++||....+
T Consensus 15 ~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~i 63 (110)
T PF04273_consen 15 PSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHI 63 (110)
T ss_dssp --HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE-
T ss_pred CCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEe
Confidence 6677888999999999966655431 13467889999999998654
No 328
>PF01619 Pro_dh: Proline dehydrogenase; InterPro: IPR002872 The proline oxidase/dehydrogenase 1.5.99.8 from EC is responsible for the first step in the conversion of proline to glutamate for use as a carbon and nitrogen source. The enzyme requires FAD as a cofactor, and is induced by proline.; GO: 0004657 proline dehydrogenase activity, 0006537 glutamate biosynthetic process, 0006562 proline catabolic process, 0055114 oxidation-reduction process; PDB: 2G37_A 2EKG_B 4F9I_B 3HAZ_A 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A ....
Probab=72.46 E-value=66 Score=28.13 Aligned_cols=125 Identities=15% Similarity=0.199 Sum_probs=66.7
Q ss_pred HHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCCC-------eEEecCCCCCCCCCCCCCCcc
Q psy13372 52 LVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIP-------AIHIMSGKTESSRTQPIASED 124 (273)
Q Consensus 52 ~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~-------~i~~~~G~~~~~~~~~~~~~~ 124 (273)
..+.+++.|+.++.-.. ++. ..+++..+...+.+..+++....-+.. .+.+.........+ +...+.
T Consensus 12 ~~~~l~~~g~~~sld~L---GE~--~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~k~s~l~~~~~-~~~~~~ 85 (313)
T PF01619_consen 12 TIRRLNRQGIRVSLDYL---GEA--VLTEEEADAYVEEYLQLIDAIAEAGLSWNIFSRPNVSVKLSALSPKLS-PLGEEI 85 (313)
T ss_dssp HHHHHHHTTEEEEEEEC----SS----SHHHHHHHHHHHHHHHHHHHHHHCCSCTCCS-EEEE-GGGCCTTGG-GGGHHH
T ss_pred HHHHHHHCCCEEEEEee---ccc--cCCHHHHHHHHHHHHHHHHHhhhhccccccCcCCceeeehhhccccCC-HHHHHH
Confidence 33556677777664221 122 134666677778888888877664433 12222111111100 111233
Q ss_pred hHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHH-hhc--CCCceeEeeecc
Q psy13372 125 PYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIREL-RAH--GISNVQLQFDFF 190 (273)
Q Consensus 125 ~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~-~~~--~~~~~g~~~D~~ 190 (273)
.++.+.+.++++|+.|+++||.+.|--.. ....+.+.++.+++ +.. +.|.+|+++-.+
T Consensus 86 ~~~~~~~~l~~i~~~A~~~~v~v~iDaE~--------~~~~~~~~~~~~~~~~~~~~~~~~vg~tlQaY 146 (313)
T PF01619_consen 86 DLERALERLRRICERAKEHGVFVLIDAEE--------SWYQDAILDLFLELMRKYNKGWPNVGITLQAY 146 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHTTEEEEE------------GGGHHHHHHHHHHHCCHHGTT--SEEEEEETT
T ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEcCCC--------ccchHHHHHHHHHHhhHhhCCCCeEEEEEech
Confidence 57889999999999999999999887632 12344455666220 112 457788777643
No 329
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=72.42 E-value=17 Score=30.58 Aligned_cols=84 Identities=13% Similarity=0.003 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN 101 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG 101 (273)
+....++.++.+|.+.|-+-.||...-.+.+++.++++|+++..+.... ...+.+.....-+.+.+.+..+..-+
T Consensus 107 ~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~-----~~~~~~ia~i~p~~i~~~~~~~~~~~ 181 (239)
T TIGR02990 107 PSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLG-----LTDDREMARISPDCIVEAALAAFDPD 181 (239)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccC-----CCCCceeeecCHHHHHHHHHHhcCCC
Confidence 4566788889999999999999874456889999999999999874321 11111111112234444555445567
Q ss_pred CCeEEecCC
Q psy13372 102 IPAIHIMSG 110 (273)
Q Consensus 102 ~~~i~~~~G 110 (273)
+..|.+...
T Consensus 182 aDAifisCT 190 (239)
T TIGR02990 182 ADALFLSCT 190 (239)
T ss_pred CCEEEEeCC
Confidence 887777533
No 330
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=72.16 E-value=69 Score=28.68 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=48.8
Q ss_pred HHHHHHHHc-CCeeEEEecCCccccCCCCCchhHHHHHHHH-HHHHHHHHHcC--CCeEEecCCCCCCCCCCCCCCcchH
Q psy13372 51 QLVAAQTRH-GLKQVLINTEVDENFGYAAVKGKESEFRASL-EKTIQYACALN--IPAIHIMSGKTESSRTQPIASEDPY 126 (273)
Q Consensus 51 ~~~~~l~~~-gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~a~~lG--~~~i~~~~G~~~~~~~~~~~~~~~~ 126 (273)
++.+.+++. ++++..++++.+.. . .+++.....++.+ +.+.+++.++| .+.|-+..| ++.... +....-.+
T Consensus 153 ~~~~~~~~~~~l~~~Glh~H~gs~--~-~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~idiGGG-f~~~y~-~~~~~~~~ 227 (377)
T cd06843 153 DALELLRDLPNIRLRGFHFHLMSH--N-LDAAAHLALVKAYLETARQWAAEHGLDLDVVNVGGG-IGVNYA-DPEEQFDW 227 (377)
T ss_pred HHHHHHHhCCCccEEEEEEEcCcC--c-CChHHHHHHHHHHHHHHHHHHHHhCCCCcEEEecCc-cccccC-CCCCCCCH
Confidence 444445554 78988877654311 1 2344443333332 22233344555 455666533 433211 00012246
Q ss_pred HHHHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 127 TTLKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 127 ~~~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
+.+.+.++++++... .++++.+||
T Consensus 228 ~~~~~~i~~~~~~~~-~~~~l~~Ep 251 (377)
T cd06843 228 AGFCEGLDQLLAEYE-PGLTLRFEC 251 (377)
T ss_pred HHHHHHHHHHHHhcC-CCCEEEEcc
Confidence 677777777765432 479999998
No 331
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=72.12 E-value=27 Score=28.84 Aligned_cols=65 Identities=14% Similarity=0.209 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHcCCCeEEecC-CCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCC
Q psy13372 86 FRASLEKTIQYACALNIPAIHIMS-GKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSS 164 (273)
Q Consensus 86 ~~~~~~~~i~~a~~lG~~~i~~~~-G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~ 164 (273)
.+-....++++.+.+|+..+.++| ++. ...+-++.+++.+.++|+. +||... --+.+
T Consensus 133 ~iV~vetAiaml~dmG~~SiKffPM~Gl---------------~~leE~~avA~aca~~g~~--lEPTGG-----Idl~N 190 (236)
T TIGR03581 133 AIVPIETAIAMLKDMGGSSVKFFPMGGL---------------KHLEEYAAVAKACAKHGFY--LEPTGG-----IDLDN 190 (236)
T ss_pred ceeeHHHHHHHHHHcCCCeeeEeecCCc---------------ccHHHHHHHHHHHHHcCCc--cCCCCC-----ccHHh
Confidence 345677899999999999998875 222 1245577888999999986 599754 23566
Q ss_pred HHHHHHHH
Q psy13372 165 FRVAERLI 172 (273)
Q Consensus 165 ~~~~~~li 172 (273)
.++..+++
T Consensus 191 f~~I~~i~ 198 (236)
T TIGR03581 191 FEEIVQIA 198 (236)
T ss_pred HHHHHHHH
Confidence 67777777
No 332
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=71.96 E-value=30 Score=30.76 Aligned_cols=76 Identities=14% Similarity=0.086 Sum_probs=49.3
Q ss_pred HHHHHHHHHcCCCeEEecCC-CC---------CCCH---HHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFP-PV---------GVTL---EQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASL 90 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~-~~---------~~~~---~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (273)
++.++.++++|+..|.+... .+ ..+. .+..+.++++|+...++..-.+ + |. +..+.+
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~G----l---Pg---qt~~~~ 167 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYD----T---PL---DNKKLL 167 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecC----C---CC---CCHHHH
Confidence 68899999999999988752 11 1222 3444567788887544433221 2 11 124577
Q ss_pred HHHHHHHHHcCCCeEEecC
Q psy13372 91 EKTIQYACALNIPAIHIMS 109 (273)
Q Consensus 91 ~~~i~~a~~lG~~~i~~~~ 109 (273)
++.++.+.++|+..+.+.+
T Consensus 168 ~~~l~~~~~l~~~~is~y~ 186 (350)
T PRK08446 168 KEELKLAKELPINHLSAYS 186 (350)
T ss_pred HHHHHHHHhcCCCEEEecc
Confidence 8888999999999887754
No 333
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=71.73 E-value=43 Score=30.48 Aligned_cols=94 Identities=16% Similarity=0.126 Sum_probs=49.2
Q ss_pred HHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHH-HHcC--CCeEEecCCCCCCCCCCCCCCcchHHH
Q psy13372 52 LVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYA-CALN--IPAIHIMSGKTESSRTQPIASEDPYTT 128 (273)
Q Consensus 52 ~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a-~~lG--~~~i~~~~G~~~~~~~~~~~~~~~~~~ 128 (273)
++.+.+..++.+..+++..+.+. .+.+....+.+.+.+.+... ...| .+.+.+. |+.+-.... ......+..
T Consensus 180 ~~~~~~~~~l~~~Glh~HiGSq~---~d~~~~~~a~~~~~~~~~~~~~~~g~~l~~inlG-GG~gi~Y~~-~~~~~~~~~ 254 (394)
T COG0019 180 LERAAKLLGLELVGLHFHIGSQI---TDLDPFEEALAKVEELFGRLAEELGIQLEWLNLG-GGLGITYED-EYDPPDLAA 254 (394)
T ss_pred HHHHHhcCCCceEEEEEeecCCC---CCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEec-CCcCcCCCC-CCCCcCHHH
Confidence 33334456899998887665221 24455555555555555544 3444 4566664 334322110 012333444
Q ss_pred HHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 129 LKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 129 ~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
.++.+++..... -.++++.+||
T Consensus 255 ~~~~l~~~~~~~-~~~~~l~~EP 276 (394)
T COG0019 255 YAKALKEAFGEY-AEDVELILEP 276 (394)
T ss_pred HHHHHHHHHhhc-cCCCeEEEcc
Confidence 444444433322 3689999998
No 334
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=71.69 E-value=66 Score=27.82 Aligned_cols=72 Identities=8% Similarity=0.005 Sum_probs=54.6
Q ss_pred CcchHHHHHHHHHHHHHHHhhCCcEEEEcc--CCCCCC------CCcccCCHHHHHHHHHHHhhcCCCceeEeeeccccc
Q psy13372 122 SEDPYTTLKENLIYACAELERHSLTALIEP--VNQHSV------PGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQ 193 (273)
Q Consensus 122 ~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~--~~~~~~------~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~ 193 (273)
+.-.++.-++..++++++|+.+||.+--|- ++.... ...+.++++++.+++ ++.+-..+.+.+-+.|-.
T Consensus 106 S~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv---~~TgvD~LAvaiGt~HG~ 182 (284)
T PRK12857 106 SKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFV---EETGVDALAIAIGTAHGP 182 (284)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHH---HHHCCCEEeeccCccccc
Confidence 344578889999999999999998777664 221100 113477999999999 998888899999999987
Q ss_pred ccC
Q psy13372 194 RIC 196 (273)
Q Consensus 194 ~~~ 196 (273)
+.+
T Consensus 183 y~~ 185 (284)
T PRK12857 183 YKG 185 (284)
T ss_pred cCC
Confidence 654
No 335
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=71.59 E-value=24 Score=30.72 Aligned_cols=65 Identities=12% Similarity=0.010 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHcCCCeEEecCCCC-CC--CC-CCCCCC---------cchHHHHHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 87 RASLEKTIQYACALNIPAIHIMSGKT-ES--SR-TQPIAS---------EDPYTTLKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 87 ~~~~~~~i~~a~~lG~~~i~~~~G~~-~~--~~-~~~~~~---------~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
++.+++.|+.++..+.+.+.+|.... +. +. ..|.-. ...--...+-+++++++|+++||+|..|-
T Consensus 15 ~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viPEi 92 (303)
T cd02742 15 VESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIPEI 92 (303)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEEec
Confidence 67899999999999999999986421 10 00 001000 00112345779999999999999999884
No 336
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=71.56 E-value=71 Score=28.09 Aligned_cols=139 Identities=14% Similarity=0.164 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCC-c-EEEEccCCCCCCCCcccC
Q psy13372 86 FRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHS-L-TALIEPVNQHSVPGYYLS 163 (273)
Q Consensus 86 ~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~g-v-~i~lE~~~~~~~~~~~~~ 163 (273)
..+.+.+.++.+..+|++.|++..|.+ -- . . .+.++++.+++.+ + .+.+.+ .+.++.
T Consensus 46 s~eei~~li~~~~~~Gv~~I~~tGGEP-ll------r-~-------dl~~li~~i~~~~~l~~i~itT------NG~ll~ 104 (329)
T PRK13361 46 SLEELAWLAQAFTELGVRKIRLTGGEP-LV------R-R-------GCDQLVARLGKLPGLEELSLTT------NGSRLA 104 (329)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECcCC-Cc------c-c-------cHHHHHHHHHhCCCCceEEEEe------ChhHHH
Confidence 456777888888889999998854322 11 1 1 2334455555554 4 577765 122321
Q ss_pred CHHHHHHHHHHHhhcCCCceeEeeeccccc-----ccCCChH---HHHHhcCCc-ceeEEeccCCCCCCCCCCCcccHHH
Q psy13372 164 SFRVAERLIRELRAHGISNVQLQFDFFNAQ-----RICGDLT---HTFGACRDL-IGHVQIAQAPDRQEPHARGEIDYAY 234 (273)
Q Consensus 164 ~~~~~~~li~~~~~~~~~~~g~~~D~~h~~-----~~~~~~~---~~i~~~~~~-i~~vHi~d~~~~~~~g~~G~id~~~ 234 (273)
+..+-+ .+.+-..+.+.+|..... ..++++. +.++.+... +..+.+.-. ..+|. -.-++..
T Consensus 105 ---~~~~~L---~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v---~~~g~-N~~ei~~ 174 (329)
T PRK13361 105 ---RFAAEL---ADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAV---ILRGQ-NDDEVLD 174 (329)
T ss_pred ---HHHHHH---HHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEE---EECCC-CHHHHHH
Confidence 222233 566667799999986421 2223333 333333221 112222211 11233 3345778
Q ss_pred HHHHHHHcCCCceEEEeeecCC
Q psy13372 235 VFELLAREGYEGYVGLEYKPQG 256 (273)
Q Consensus 235 i~~~L~~~gy~g~~~lE~~~~~ 256 (273)
+++.+++.|.+ +..+|+.|.+
T Consensus 175 ~~~~~~~~gi~-~~~ie~mP~g 195 (329)
T PRK13361 175 LVEFCRERGLD-IAFIEEMPLG 195 (329)
T ss_pred HHHHHHhcCCe-EEEEecccCC
Confidence 89999999986 5678877644
No 337
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=71.34 E-value=68 Score=27.78 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=55.1
Q ss_pred CcchHHHHHHHHHHHHHHHhhCCcEEEEcc--CCCCCC----CCcccCCHHHHHHHHHHHhhcCCCceeEeeeccccccc
Q psy13372 122 SEDPYTTLKENLIYACAELERHSLTALIEP--VNQHSV----PGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRI 195 (273)
Q Consensus 122 ~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~--~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~ 195 (273)
+...++.-++..++++++|+++||.+--|- +..... ...+.++++++.+++ ++.+-..+.+.+-+.|-.+.
T Consensus 109 S~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv---~~TgvD~LAvaiGt~HG~Y~ 185 (285)
T PRK07709 109 SHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLV---EATGIDCLAPALGSVHGPYK 185 (285)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHH---HHhCCCEEEEeecccccCcC
Confidence 445688889999999999999998776664 211100 123468999999999 99988889999999998765
Q ss_pred C
Q psy13372 196 C 196 (273)
Q Consensus 196 ~ 196 (273)
+
T Consensus 186 ~ 186 (285)
T PRK07709 186 G 186 (285)
T ss_pred C
Confidence 4
No 338
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=71.22 E-value=75 Score=28.21 Aligned_cols=95 Identities=8% Similarity=0.044 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCCC--eEEecCCCCCCCCCCCCCCcchHH
Q psy13372 50 EQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIP--AIHIMSGKTESSRTQPIASEDPYT 127 (273)
Q Consensus 50 ~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~--~i~~~~G~~~~~~~~~~~~~~~~~ 127 (273)
.++.+.+++.++.+..+++..+.. ..+++.....++.+.+.++...+.|.+ .|.+.. +.+.... ...-.++
T Consensus 151 ~~~~~~~~~~~l~l~Gl~~H~gs~---~~d~~~~~~~~~~~~~~~~~l~~~g~~~~~id~GG-G~~~~y~---~~~~~~~ 223 (368)
T cd06810 151 RAALERAKELDLRLVGLHFHVGSQ---ILDLETIVQALSDARELIEELVEMGFPLEMLDLGG-GLGIPYD---EQPLDFE 223 (368)
T ss_pred HHHHHHHHhCCCcEEEEEEcCCcC---CCCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEeCC-CcccccC---CCCCCHH
Confidence 445556677788888877654311 134566666666666666666655644 555543 3433211 0233567
Q ss_pred HHHHHHHHHHHHHh--hCCcEEEEcc
Q psy13372 128 TLKENLIYACAELE--RHSLTALIEP 151 (273)
Q Consensus 128 ~~~~~l~~l~~~a~--~~gv~i~lE~ 151 (273)
.+.+.+.++.+... ..++++.+||
T Consensus 224 ~~~~~i~~~~~~~~~~~~~~~l~~Ep 249 (368)
T cd06810 224 EYAALINPLLKKYFPNDPGVTLILEP 249 (368)
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEec
Confidence 77777776665442 2358999998
No 339
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=71.17 E-value=89 Score=29.04 Aligned_cols=126 Identities=6% Similarity=-0.140 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHc-----CCCeEEecCC-CC--CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAEL-----GFRYIESWFP-PV--GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKT 93 (273)
Q Consensus 22 ~~~~~l~~~~~~-----G~~~vEl~~~-~~--~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (273)
+.+..++.++.+ |++.|-+... +. .....++.+.+.+.|+...+.. . ...+ ...
T Consensus 228 s~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i~~~~~~-~------~~~~-----------~e~ 289 (472)
T TIGR03471 228 SAESVIEEVKYALENFPEVREFFFDDDTFTDDKPRAEEIARKLGPLGVTWSCNA-R------ANVD-----------YET 289 (472)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEe-c------CCCC-----------HHH
Confidence 667776666543 6666666432 21 1224566666777776544321 1 0011 235
Q ss_pred HHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHH-----HHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHH
Q psy13372 94 IQYACALNIPAIHIMSGKTESSRTQPIASEDPYTT-----LKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVA 168 (273)
Q Consensus 94 i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~-----~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~ 168 (273)
++..++.|+..+.+. --+. +++.++. ..+...+..+.++++|+.+...-+-.. | ..|.++.
T Consensus 290 l~~l~~aG~~~v~iG--iES~-------s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGl--P---get~e~~ 355 (472)
T TIGR03471 290 LKVMKENGLRLLLVG--YESG-------DQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGL--P---GETRETI 355 (472)
T ss_pred HHHHHHcCCCEEEEc--CCCC-------CHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeC--C---CCCHHHH
Confidence 666777899988763 2211 1111211 234566677888889998776654322 3 3455555
Q ss_pred HHHHHHHhhcC
Q psy13372 169 ERLIRELRAHG 179 (273)
Q Consensus 169 ~~li~~~~~~~ 179 (273)
.+.++-+.+++
T Consensus 356 ~~ti~~~~~l~ 366 (472)
T TIGR03471 356 RKTIDFAKELN 366 (472)
T ss_pred HHHHHHHHhcC
Confidence 44442225554
No 340
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=71.06 E-value=25 Score=22.66 Aligned_cols=43 Identities=19% Similarity=0.131 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeE
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQV 64 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~ 64 (273)
++++.++.+++.|++.|-+.--..-....++.+..++.|+.+.
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i 58 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPI 58 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEE
Confidence 8999999999999999988742211345677777788898875
No 341
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=70.63 E-value=68 Score=27.52 Aligned_cols=154 Identities=12% Similarity=-0.033 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCC---CCHH---HHH-HHHHHcC--CeeEEEecCCccccCCCCCchhHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVG---VTLE---QLV-AAQTRHG--LKQVLINTEVDENFGYAAVKGKESEFRASLEK 92 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~---~~~~---~~~-~~l~~~g--L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (273)
.+.+.++.+.+.|.+++=+.+..++ .+.+ ++. ..++..+ +.+.. ++. . .+ .+...+
T Consensus 23 ~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~-gv~---~--~s---------t~~~i~ 87 (289)
T PF00701_consen 23 ALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIA-GVG---A--NS---------TEEAIE 87 (289)
T ss_dssp HHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEE-EEE---S--SS---------HHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEe-cCc---c--hh---------HHHHHH
Confidence 5778888899999999999875321 2222 222 2233333 33332 221 0 11 345566
Q ss_pred HHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHH
Q psy13372 93 TIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLI 172 (273)
Q Consensus 93 ~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li 172 (273)
.++.|+.+|+..+.+.+..... -..+.++++++.++ ...++.+.+-|.+.. ....-+++...++.
T Consensus 88 ~a~~a~~~Gad~v~v~~P~~~~---------~s~~~l~~y~~~ia---~~~~~pi~iYn~P~~---tg~~ls~~~l~~L~ 152 (289)
T PF00701_consen 88 LARHAQDAGADAVLVIPPYYFK---------PSQEELIDYFRAIA---DATDLPIIIYNNPAR---TGNDLSPETLARLA 152 (289)
T ss_dssp HHHHHHHTT-SEEEEEESTSSS---------CCHHHHHHHHHHHH---HHSSSEEEEEEBHHH---HSSTSHHHHHHHHH
T ss_pred HHHHHhhcCceEEEEecccccc---------chhhHHHHHHHHHH---hhcCCCEEEEECCCc---cccCCCHHHHHHHh
Confidence 7777899999988664432211 12345677776666 446788888885411 11234566666666
Q ss_pred HHHhhcCCCceeEeeecccccccCCChHHHHHhcCCcceeEE
Q psy13372 173 RELRAHGISNVQLQFDFFNAQRICGDLTHTFGACRDLIGHVQ 214 (273)
Q Consensus 173 ~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~~vH 214 (273)
+ .||+.-.=|...-. ....+.++...+.+..+.
T Consensus 153 ---~---~~nv~giK~s~~~~---~~~~~~~~~~~~~~~v~~ 185 (289)
T PF00701_consen 153 ---K---IPNVVGIKDSSGDL---ERLIQLLRAVGPDFSVFC 185 (289)
T ss_dssp ---T---STTEEEEEESSSBH---HHHHHHHHHSSTTSEEEE
T ss_pred ---c---CCcEEEEEcCchhH---HHHHHHhhhcccCeeeec
Confidence 5 47866555543211 112334444455554443
No 342
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=70.44 E-value=85 Score=28.52 Aligned_cols=96 Identities=10% Similarity=0.016 Sum_probs=51.0
Q ss_pred HHHHHHHHc-CCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC--CCeEEecCCCCCCCCCCCCCCcchHH
Q psy13372 51 QLVAAQTRH-GLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN--IPAIHIMSGKTESSRTQPIASEDPYT 127 (273)
Q Consensus 51 ~~~~~l~~~-gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG--~~~i~~~~G~~~~~~~~~~~~~~~~~ 127 (273)
++.+.+++. ++++..++++.+.. . .+++.....++.+.+.++.....| .+.|.+.. +++.... +....-.++
T Consensus 178 ~~~~~~~~~~~l~l~Glh~H~gs~--~-~d~~~~~~~~~~~~~~~~~l~~~g~~l~~idiGG-G~~~~y~-~~~~~~~~~ 252 (417)
T TIGR01048 178 EAYLYALQLPHLELVGIHCHIGSQ--I-TDLSPFVEAAEKVVDLVEELKAEGIDLEFLDLGG-GLGIPYT-PEEEPPDPE 252 (417)
T ss_pred HHHHHHHhCCCCCEEEEEEeCCCC--C-CChHHHHHHHHHHHHHHHHHHhcCCCccEEEeCC-ccccccC-CCCCCCCHH
Confidence 333344454 58888877654311 1 245555556666666666665555 44556543 3322211 000112456
Q ss_pred HHHHHHHHHHHHH--hhCCcEEEEcc
Q psy13372 128 TLKENLIYACAEL--ERHSLTALIEP 151 (273)
Q Consensus 128 ~~~~~l~~l~~~a--~~~gv~i~lE~ 151 (273)
.+.+.+.+..+.. ...++++.+||
T Consensus 253 ~~~~~i~~~~~~~~~~~~~~~l~~EP 278 (417)
T TIGR01048 253 EYAQAILAALEGYADLGLDPKLILEP 278 (417)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEcc
Confidence 6666666655433 23478999998
No 343
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=70.35 E-value=81 Score=28.24 Aligned_cols=76 Identities=13% Similarity=0.140 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCCeEEecCC-CC---------CCCH---HHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFP-PV---------GVTL---EQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASL 90 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~-~~---------~~~~---~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (273)
++.++.++++|+..|.+... .+ ..+. .+..+.++++|+...++..-. |+ |. +..+.+
T Consensus 99 ~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~----Gl---Pg---qt~e~~ 168 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMF----GL---PN---QTLEDW 168 (374)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeec----CC---CC---CCHHHH
Confidence 57899999999999988853 11 1222 333445778888633333221 12 11 124677
Q ss_pred HHHHHHHHHcCCCeEEecC
Q psy13372 91 EKTIQYACALNIPAIHIMS 109 (273)
Q Consensus 91 ~~~i~~a~~lG~~~i~~~~ 109 (273)
++.++.+.++|...+.+.+
T Consensus 169 ~~~l~~~~~l~~~~is~y~ 187 (374)
T PRK05799 169 KETLEKVVELNPEHISCYS 187 (374)
T ss_pred HHHHHHHHhcCCCEEEEec
Confidence 7888999999999887643
No 344
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=70.31 E-value=14 Score=33.09 Aligned_cols=125 Identities=10% Similarity=-0.019 Sum_probs=72.9
Q ss_pred CHHHH---HHHHHHcCCCeEEecCCCCCCCHHHHHHH-HHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHH
Q psy13372 22 NYLDK---YRVAAELGFRYIESWFPPVGVTLEQLVAA-QTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYA 97 (273)
Q Consensus 22 ~~~~~---l~~~~~~G~~~vEl~~~~~~~~~~~~~~~-l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 97 (273)
++++- +.++-+.|.|.|.=-... .++.++|+. ++...+.|-++-.+.-... .....-+-..+.+..+++.-
T Consensus 76 ~i~~EveK~~~A~~~GADtvMDLStG--gdl~eiR~~ii~~s~vPvGTVPIYqA~~~---~~~~~~~~t~d~~~~~v~~q 150 (432)
T COG0422 76 DIDEEVEKAVWAIKWGADTVMDLSTG--GDLHEIREWIIRNSPVPVGTVPIYQALEE---VNGKVEDLTEDDFFDTVEKQ 150 (432)
T ss_pred CHHHHHHHHHHHHHhCcceeEecccC--CCHHHHHHHHHhcCCCCcCCchHHHHHHH---HhcchhhCCHHHHHHHHHHH
Confidence 45544 556778999998554332 467778754 5555555443321110000 01112233456677777777
Q ss_pred HHcCCCeEEecCCCCC--------CCCCCCC-C-----------CcchHHHHHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 98 CALNIPAIHIMSGKTE--------SSRTQPI-A-----------SEDPYTTLKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 98 ~~lG~~~i~~~~G~~~--------~~~~~~~-~-----------~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
.+-|+.++++|.|... ..+-.++ + .....+-+.+.+.+|++++++|+|++.|=.
T Consensus 151 a~~GVdfmTIHaGV~~~~~~~~~~~~R~~giVSRGGsi~a~Wml~~~~ENply~~fd~lleI~k~yDvtlSLGD 224 (432)
T COG0422 151 AEQGVDFMTIHAGVLLEYVPRTKRSGRVTGIVSRGGSIMAAWMLHNHKENPLYEHFDELLEIFKEYDVTLSLGD 224 (432)
T ss_pred HHhCCcEEEeehhhhHHHHHHHHhcCceeeeeccchHHHHHHHHHcCCcCchhhhHHHHHHHHHHhCeeeeccC
Confidence 7889999999998541 0000000 0 011123467889999999999999999876
No 345
>PLN02801 beta-amylase
Probab=70.31 E-value=7.6 Score=36.04 Aligned_cols=46 Identities=15% Similarity=-0.044 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCC-----------CCCHHHHHHHHHHcCCeeEEEe
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPV-----------GVTLEQLVAAQTRHGLKQVLIN 67 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~-----------~~~~~~~~~~l~~~gL~i~~~~ 67 (273)
.+...|+.++.+|.+||++..+++ -...+++.+.++++||++..+-
T Consensus 38 ~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq~vm 94 (517)
T PLN02801 38 GLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKIQAIM 94 (517)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEE
Confidence 588999999999999999885432 1225899999999999997543
No 346
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=70.31 E-value=60 Score=26.74 Aligned_cols=127 Identities=14% Similarity=0.033 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeE-EEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHc
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQV-LINTEVDENFGYAAVKGKESEFRASLEKTIQYACAL 100 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l 100 (273)
+.++.++.+.+.|.+.+=...... .+.+.+.+..+++ ..+. +++.... .. +...+..++.+++.+ ...
T Consensus 16 ~~~~~l~~~~~~gv~~~v~~~~~~-~~~~~~~~la~~~-~~i~~~~G~hP~----~~--~~~~~~~~~~l~~~~---~~~ 84 (251)
T cd01310 16 DRDDVLARAREAGVIKIIVVGTDL-KSSKRALELAKKY-DNVYAAVGLHPH----DA--DEHVDEDLDLLELLA---ANP 84 (251)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCH-HHHHHHHHHHHhC-CCeEEEEeeCcc----hh--hcCCHHHHHHHHHHh---cCC
Confidence 568889999999977655543322 3456677777777 3333 3322211 10 110112234444333 222
Q ss_pred CCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcC
Q psy13372 101 NIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHG 179 (273)
Q Consensus 101 G~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 179 (273)
++..|. -.|..... ....+..-.+.++.+.++|+++|+.+.++... .+++..+++ ++.+
T Consensus 85 ~~~~IG-eiGld~~~------~~~~~~~q~~~~~~~~~~a~e~~~pv~iH~~~----------~~~~~~~l~---~~~~ 143 (251)
T cd01310 85 KVVAIG-EIGLDYYR------DKSPREVQKEVFRAQLELAKELNLPVVIHSRD----------AHEDVLEIL---KEYG 143 (251)
T ss_pred CEEEEE-eeecCcCC------CCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeC----------chHHHHHHH---HhcC
Confidence 332221 11211110 11134455678889999999999999999631 256677888 7764
No 347
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=70.15 E-value=12 Score=30.99 Aligned_cols=115 Identities=10% Similarity=0.045 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEecCCCC-CCCCCCCCCCcchHHHHHHHHHHHHHHHh--hCCcEEEEccCCCCCCCCc
Q psy13372 84 SEFRASLEKTIQYACALNIPAIHIMSGKT-ESSRTQPIASEDPYTTLKENLIYACAELE--RHSLTALIEPVNQHSVPGY 160 (273)
Q Consensus 84 ~~~~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~a~--~~gv~i~lE~~~~~~~~~~ 160 (273)
....+.++..++.|..+|++.+++..-.. +..++ +......++.+.+.+.+..+... +.||++-+=. .
T Consensus 21 ~~G~~~l~~i~~~~~~~gI~~lTvYaFS~eN~~R~-~~EV~~Lm~l~~~~l~~~~~~~~~~~~~irvr~iG--------d 91 (223)
T PF01255_consen 21 RAGAEKLKEIVEWCLELGIKYLTVYAFSTENWKRP-KEEVDALMDLFERYLRELIDELNFHKNGIRVRVIG--------D 91 (223)
T ss_dssp HHHHHHHHHHHHHHHHCT-SEEEEEEEETTGGGS--HHHHHHHHHHHHHHHHHHHHHHH--HTTEEEEEES---------
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEecchhhcCC-HHHHHHHHHHHHHHHHHHhhhcchhhcCeeEEEEe--------c
Confidence 34567889999999999999999865332 22221 00012234455566677776666 7888877542 1
Q ss_pred ccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhcC
Q psy13372 161 YLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACR 207 (273)
Q Consensus 161 ~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~ 207 (273)
...-+++..+.+++++.....+-++.+.++--+-...++.++++.+.
T Consensus 92 ~~~Lp~~~~~~i~~~e~~T~~n~~l~Lnia~~Yggr~eI~~a~~~~~ 138 (223)
T PF01255_consen 92 LSLLPEELQKAIAEAEEKTKNNTGLTLNIAINYGGRDEIVDAARKLA 138 (223)
T ss_dssp GGGS-HHHHHHHHHHHHHHTTSSSEEEEEEECE-HHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHhhccCcceeEEEEecCCcHHHHHHHHHHhh
Confidence 22235566666644444433444555555433322233444444443
No 348
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=70.09 E-value=68 Score=27.30 Aligned_cols=131 Identities=16% Similarity=0.111 Sum_probs=71.7
Q ss_pred HHHHHHcCCCeEEecCCCC---CCC----HHHHHHHHHHc--C--CeeEEEecCCccccCCCCCchhHHHHHHHHHHHHH
Q psy13372 27 YRVAAELGFRYIESWFPPV---GVT----LEQLVAAQTRH--G--LKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQ 95 (273)
Q Consensus 27 l~~~~~~G~~~vEl~~~~~---~~~----~~~~~~~l~~~--g--L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (273)
.+.+.+.|.+-|++..+.. ..+ .+++++..+.. | ++++. -+. . ++ +. +.+.++++
T Consensus 89 a~~Ai~~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIl-Et~---~--L~-~e-------e~i~~a~~ 154 (257)
T PRK05283 89 TRAAIAYGADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVII-ETG---E--LK-DE-------ALIRKASE 154 (257)
T ss_pred HHHHHHcCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEE-ecc---c--cC-CH-------HHHHHHHH
Confidence 4456678999999997631 111 13334333321 2 44432 111 1 21 11 24778999
Q ss_pred HHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCC--cEEEEccCCCCCCCCcccCCHHHHHHHHH
Q psy13372 96 YACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHS--LTALIEPVNQHSVPGYYLSSFRVAERLIR 173 (273)
Q Consensus 96 ~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~g--v~i~lE~~~~~~~~~~~~~~~~~~~~li~ 173 (273)
.|...|+.+|.+-+|..+... +. +..+-+.+.++++| -++.+-.= .-+.|.+++.+++
T Consensus 155 ~a~~aGADFVKTSTGf~~~gA-----t~-------edv~lm~~~i~~~~~~~~vgIKAs-------GGIrt~~~A~~~i- 214 (257)
T PRK05283 155 IAIKAGADFIKTSTGKVPVNA-----TL-------EAARIMLEVIRDMGVAKTVGFKPA-------GGVRTAEDAAQYL- 214 (257)
T ss_pred HHHHhCCCEEEcCCCCCCCCC-----CH-------HHHHHHHHHHHhcccCCCeeEEcc-------CCCCCHHHHHHHH-
Confidence 999999999999888654331 22 22333334444333 24555541 1388999999999
Q ss_pred HHhhcCCCceeEeeecccccc
Q psy13372 174 ELRAHGISNVQLQFDFFNAQR 194 (273)
Q Consensus 174 ~~~~~~~~~~g~~~D~~h~~~ 194 (273)
+... .-+|-.|=..++.+
T Consensus 215 --~ag~-~~lg~~~~~~~~fR 232 (257)
T PRK05283 215 --ALAD-EILGADWADARHFR 232 (257)
T ss_pred --HHHH-HHhChhhcCcccEe
Confidence 6542 34555443333433
No 349
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=70.03 E-value=28 Score=30.89 Aligned_cols=79 Identities=18% Similarity=0.211 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCH
Q psy13372 86 FRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSF 165 (273)
Q Consensus 86 ~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~ 165 (273)
..+.+.+.++.+..+|...|.+..|.+ -- . +.+.++++++++.|+.+.+-+ + +. +-+.
T Consensus 38 ~~e~~~~ii~~~~~~g~~~v~~~GGEP-ll------~--------~~~~~ii~~~~~~g~~~~l~T-N-----G~-ll~~ 95 (358)
T TIGR02109 38 TTEEWTDVLTQAAELGVLQLHFSGGEP-LA------R--------PDLVELVAHARRLGLYTNLIT-S-----GV-GLTE 95 (358)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEeCccc-cc------c--------ccHHHHHHHHHHcCCeEEEEe-C-----Cc-cCCH
Confidence 356677888888999998887753322 11 1 124466777888899888865 1 22 2333
Q ss_pred HHHHHHHHHHhhcCCCceeEeeecc
Q psy13372 166 RVAERLIRELRAHGISNVQLQFDFF 190 (273)
Q Consensus 166 ~~~~~li~~~~~~~~~~~g~~~D~~ 190 (273)
+.+ +.+ ...+-..+.+.+|..
T Consensus 96 e~~-~~L---~~~g~~~v~iSldg~ 116 (358)
T TIGR02109 96 ARL-DAL---ADAGLDHVQLSFQGV 116 (358)
T ss_pred HHH-HHH---HhCCCCEEEEeCcCC
Confidence 333 333 444445688888865
No 350
>PRK08185 hypothetical protein; Provisional
Probab=69.97 E-value=73 Score=27.57 Aligned_cols=71 Identities=8% Similarity=0.012 Sum_probs=53.0
Q ss_pred cchHHHHHHHHHHHHHHHhhCCcEEEEcc--CCCCCC------CCcccCCHHHHHHHHHHHhhcCCCceeEeeecccccc
Q psy13372 123 EDPYTTLKENLIYACAELERHSLTALIEP--VNQHSV------PGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQR 194 (273)
Q Consensus 123 ~~~~~~~~~~l~~l~~~a~~~gv~i~lE~--~~~~~~------~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~ 194 (273)
.-.++..++.-++++++|+.+|+.+..|- ++.... ...+.++++++.+++ +..+-..+.+.+-+.|-..
T Consensus 101 ~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~---~~TgvD~LAvaiGt~HG~y 177 (283)
T PRK08185 101 LLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFV---SRTGVDTLAVAIGTAHGIY 177 (283)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHH---HhhCCCEEEeccCcccCCc
Confidence 34577888999999999999999888875 211000 012367999999999 9887788999998888765
Q ss_pred cC
Q psy13372 195 IC 196 (273)
Q Consensus 195 ~~ 196 (273)
..
T Consensus 178 ~~ 179 (283)
T PRK08185 178 PK 179 (283)
T ss_pred CC
Confidence 43
No 351
>PRK14057 epimerase; Provisional
Probab=69.84 E-value=69 Score=27.24 Aligned_cols=105 Identities=10% Similarity=-0.029 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCee--------EEEecCCccccCCCCCchhHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQ--------VLINTEVDENFGYAAVKGKESEFRASLEKT 93 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (273)
+++..++..+++|.+.|-++.... ..+.+..+.++++|.++ ..+.. +++. | ++.++..
T Consensus 86 ~P~~~i~~~~~aGad~It~H~Ea~-~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAl----nP~T---p------~e~i~~~ 151 (254)
T PRK14057 86 DQWTAAQACVKAGAHCITLQAEGD-IHLHHTLSWLGQQTVPVIGGEMPVIRGISL----CPAT---P------LDVIIPI 151 (254)
T ss_pred CHHHHHHHHHHhCCCEEEEeeccc-cCHHHHHHHHHHcCCCcccccccceeEEEE----CCCC---C------HHHHHHH
Confidence 578889999999999999987643 45667778888888751 22211 1111 1 2334444
Q ss_pred HHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 94 IQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 94 i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
++... -+-.+.+.||.-+. .-.....+.++++.++..+.|..+-||-
T Consensus 152 l~~vD--~VLvMtV~PGfgGQ---------~Fi~~~l~KI~~lr~~~~~~~~~~~IeV 198 (254)
T PRK14057 152 LSDVE--VIQLLAVNPGYGSK---------MRSSDLHERVAQLLCLLGDKREGKIIVI 198 (254)
T ss_pred HHhCC--EEEEEEECCCCCch---------hccHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 44211 12234555554322 2345667778888888778887777775
No 352
>PRK14566 triosephosphate isomerase; Provisional
Probab=69.81 E-value=42 Score=28.63 Aligned_cols=78 Identities=12% Similarity=0.110 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHH-H--HhhCCcEEEEccCCCCCCCCcccCC
Q psy13372 88 ASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACA-E--LERHSLTALIEPVNQHSVPGYYLSS 164 (273)
Q Consensus 88 ~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~--a~~~gv~i~lE~~~~~~~~~~~~~~ 164 (273)
+.+.+-++.|...|...|.+. |.....+. .....+.+.+.|...++ . ..-..+.|++||.+-. ...-..+
T Consensus 115 ~~v~~Kv~~al~~gl~pIvCv-GEtleere----~g~t~~vv~~Ql~~~l~~~~~~~~~~ivIAYEPvWAI--GTG~~At 187 (260)
T PRK14566 115 NIVAEKFAAAQKHGLTPILCV-GESGPARE----ARRTFEVIAEELDIVIEKNGTMAFDNAIIAYEPLWAV--GTGKSAT 187 (260)
T ss_pred HHHHHHHHHHHHCCCEEEEEc-CCcHHHHh----cCCHHHHHHHHHHHHHhccchhhcCcEEEEECcHHhc--CCCCCCC
Confidence 445566777777887776663 44322211 23344555555655554 1 1125699999997643 2335678
Q ss_pred HHHHHHHH
Q psy13372 165 FRVAERLI 172 (273)
Q Consensus 165 ~~~~~~li 172 (273)
++++.++.
T Consensus 188 ~e~a~~v~ 195 (260)
T PRK14566 188 PEQAQEVH 195 (260)
T ss_pred HHHHHHHH
Confidence 88877666
No 353
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=69.68 E-value=1e+02 Score=29.21 Aligned_cols=76 Identities=14% Similarity=0.023 Sum_probs=46.9
Q ss_pred HHHHHHHHHHcCCCeEEecCC-CC---------CCCHH---HHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHH
Q psy13372 23 YLDKYRVAAELGFRYIESWFP-PV---------GVTLE---QLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRAS 89 (273)
Q Consensus 23 ~~~~l~~~~~~G~~~vEl~~~-~~---------~~~~~---~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (273)
-++.++.++++|+..|++..- .+ ..+.+ +..+.++++|+.+...-++ + -+|. .. +.
T Consensus 205 ~~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~LM~-G-LPgq-----t~----e~ 273 (522)
T TIGR01211 205 REEHIDRMLKLGATRVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHIMP-G-LPGS-----SF----ER 273 (522)
T ss_pred CHHHHHHHHHcCCCEEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEeec-C-CCCC-----CH----HH
Confidence 468899999999999999853 11 23333 3445578899986654333 1 1211 12 23
Q ss_pred HHHHHHHHH---HcCCCeEEecC
Q psy13372 90 LEKTIQYAC---ALNIPAIHIMS 109 (273)
Q Consensus 90 ~~~~i~~a~---~lG~~~i~~~~ 109 (273)
..+.++.+. .++...+.+++
T Consensus 274 ~~~t~~~l~~~~~l~pD~Ikiyp 296 (522)
T TIGR01211 274 DLEMFREIFEDPRFKPDMLKIYP 296 (522)
T ss_pred HHHHHHHHHhccCCCcCEEEEec
Confidence 334444444 48999999887
No 354
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=69.58 E-value=28 Score=29.18 Aligned_cols=112 Identities=12% Similarity=0.104 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHH----------------HHHHHHhhCCcE---
Q psy13372 86 FRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLI----------------YACAELERHSLT--- 146 (273)
Q Consensus 86 ~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~----------------~l~~~a~~~gv~--- 146 (273)
..+.....++.++++|++.|++..|........+...-..-+.+.+.|. -++..|...|+.
T Consensus 92 ~~~~a~~il~~~~~~gv~~Ii~Lgg~~~~~~~~~v~~~at~~~~~~~l~~~~~~~~~g~i~G~~g~ll~~a~~~gi~~i~ 171 (238)
T TIGR00161 92 VYDMTNAIVEWMVRNNSRELISFNGMVVREKSQPVFGAANSQELIERLKDLIEIFPFGNLNGISGTLLTRCAVNDIPAIC 171 (238)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEeCccCCCCCCcEEEEECCHHHHHHHHHhcCcCCCCEEechhHHHHHHHHHcCCCEEE
Confidence 4578889999999999999998776543221111000001112222232 245556666653
Q ss_pred EEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhcCC
Q psy13372 147 ALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACRD 208 (273)
Q Consensus 147 i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~ 208 (273)
+.-|..+ ...++..+..++ +.++ +-+++-+|+.-....-..+...++++..
T Consensus 172 Ll~et~~-------~~PDP~AA~~ll---~~l~-~l~~~~id~~~L~e~Ae~ie~~~~el~e 222 (238)
T TIGR00161 172 LLAETLG-------PYPDPRAAASLV---EVLN-KMLNTNVDPEPLLKEAEAIESRLKKLAE 222 (238)
T ss_pred EEEeCCC-------CCCCHHHHHHHH---HHHH-HHhCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4555522 357788888888 4442 3378888877665433345555555443
No 355
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=69.51 E-value=74 Score=27.87 Aligned_cols=71 Identities=8% Similarity=-0.021 Sum_probs=53.6
Q ss_pred CcchHHHHHHHHHHHHHHHhhCCcEEEEcc--CCCCCC------CCcccCCHHHHHHHHHHHhhcCCCceeEeeeccccc
Q psy13372 122 SEDPYTTLKENLIYACAELERHSLTALIEP--VNQHSV------PGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQ 193 (273)
Q Consensus 122 ~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~--~~~~~~------~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~ 193 (273)
+.-.++.-++..++++++|+++||.+--|- ++.... .....++++++.+++ ++.+-..+.+.+-+.|-.
T Consensus 106 S~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv---~~TgvD~LAvaiGt~HG~ 182 (307)
T PRK05835 106 SHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFV---KESQVDYLAPAIGTSHGA 182 (307)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHH---HhhCCCEEEEccCccccc
Confidence 334578889999999999999998776664 211000 123478899999999 999888899999999976
Q ss_pred cc
Q psy13372 194 RI 195 (273)
Q Consensus 194 ~~ 195 (273)
+.
T Consensus 183 Yk 184 (307)
T PRK05835 183 FK 184 (307)
T ss_pred cC
Confidence 64
No 356
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=69.51 E-value=69 Score=28.71 Aligned_cols=94 Identities=16% Similarity=0.175 Sum_probs=49.1
Q ss_pred HHHHHHHHc----CCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHc-CC--CeEEecCCCCCCCCCC-----
Q psy13372 51 QLVAAQTRH----GLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACAL-NI--PAIHIMSGKTESSRTQ----- 118 (273)
Q Consensus 51 ~~~~~l~~~----gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l-G~--~~i~~~~G~~~~~~~~----- 118 (273)
.+.+.+++. ++++..++++.+.. . .+++. ..+.+++..+++..+ |. +.|-+..| ++.....
T Consensus 152 ~~~~~~~~~~~~~~l~~~Glh~H~gs~--~-~~~~~---~~~~~~~~~~~~~~~~g~~~~~idiGGG-~~~~y~~~~~~~ 224 (379)
T cd06841 152 EALAALKKIQESKNLSLVGLHCHVGSN--I-LNPEA---YSAAAKKLIELLDRLFGLELEYLDLGGG-FPAKTPLSLAYP 224 (379)
T ss_pred HHHHHHHHhhcCCCeeEEEEEecCCCc--c-CChHH---HHHHHHHHHHHHHHhcCCCCCEEEeCCC-cCcCcCcccccc
Confidence 334445554 89998888765411 1 23433 345556666666666 54 45666433 4332110
Q ss_pred CCCCcchHHHHHHHHHHHHHHH---hhCCcEEEEcc
Q psy13372 119 PIASEDPYTTLKENLIYACAEL---ERHSLTALIEP 151 (273)
Q Consensus 119 ~~~~~~~~~~~~~~l~~l~~~a---~~~gv~i~lE~ 151 (273)
+.+..-.++.+.+.+.+..+.. ...++++.+||
T Consensus 225 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~Ep 260 (379)
T cd06841 225 QEDTVPDPEDYAEAIASTLKEYYANKENKPKLILEP 260 (379)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHhhcCCCCCEEEEec
Confidence 0001224556666665544332 22468999998
No 357
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=69.40 E-value=70 Score=27.76 Aligned_cols=72 Identities=8% Similarity=0.084 Sum_probs=55.1
Q ss_pred CcchHHHHHHHHHHHHHHHhhCCcEEEEcc--CCCCC------CCCcccCCHHHHHHHHHHHhhcCCCceeEeeeccccc
Q psy13372 122 SEDPYTTLKENLIYACAELERHSLTALIEP--VNQHS------VPGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQ 193 (273)
Q Consensus 122 ~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~--~~~~~------~~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~ 193 (273)
+...++.-++..++++++|+.+||.+--|- +.... ....+.++++++.+++ ++.+-..+.+.+-+.|-.
T Consensus 109 S~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~ 185 (288)
T TIGR00167 109 SHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFV---KLTGVDSLAAAIGNVHGV 185 (288)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHH---hccCCcEEeeccCccccc
Confidence 445678889999999999999999777663 11100 0124578999999999 999888899999999987
Q ss_pred ccC
Q psy13372 194 RIC 196 (273)
Q Consensus 194 ~~~ 196 (273)
+.+
T Consensus 186 y~~ 188 (288)
T TIGR00167 186 YKG 188 (288)
T ss_pred cCC
Confidence 654
No 358
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=69.28 E-value=88 Score=28.24 Aligned_cols=97 Identities=13% Similarity=0.008 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCCeeEEEecCCccccCCCCCchhH-HHHHHHHHHHHHHHHHcCC--CeEEecCCCCCCCCCCCCCCcchH
Q psy13372 50 EQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKE-SEFRASLEKTIQYACALNI--PAIHIMSGKTESSRTQPIASEDPY 126 (273)
Q Consensus 50 ~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~a~~lG~--~~i~~~~G~~~~~~~~~~~~~~~~ 126 (273)
.++.+.+++.|+++..++.+.+.+ . .+++.. +...+.+..+.+.....|. +.+.+..| .+.... +...+-.+
T Consensus 174 ~~~~~~~~~~~l~l~Glh~h~gs~--~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~idiGGG-~~v~~~-~~~~~~~~ 248 (398)
T TIGR03099 174 PAALAFIKAADLDFQGFHIFAGSQ--N-LNAEAIIEAQAKTLALALRLAESAPAPVRVINIGGG-FGIPYF-PGNPPLDL 248 (398)
T ss_pred HHHHHHHHhCCCeEEEEEeccccc--C-CCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEeCCc-ccCCCC-CCCCCCCH
Confidence 455666777899999887654311 1 233322 2223333345555666665 45555433 322111 11022345
Q ss_pred HHHHHHHHHHHHHHhh--CCcEEEEcc
Q psy13372 127 TTLKENLIYACAELER--HSLTALIEP 151 (273)
Q Consensus 127 ~~~~~~l~~l~~~a~~--~gv~i~lE~ 151 (273)
++....|.++.+.... .++++.+||
T Consensus 249 ~~~~~~l~~~~~~~~~~~~~~~l~~EP 275 (398)
T TIGR03099 249 APVGAALAALFARLRDALPEVEILLEL 275 (398)
T ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEec
Confidence 6677777766654432 378999998
No 359
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=69.20 E-value=80 Score=27.77 Aligned_cols=80 Identities=11% Similarity=0.074 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHcCCCeEEecC--CC--------C---CCCH---HHHHHHHHH-cCCeeEEEecCCccccCCCCCchhHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWF--PP--------V---GVTL---EQLVAAQTR-HGLKQVLINTEVDENFGYAAVKGKES 84 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~--~~--------~---~~~~---~~~~~~l~~-~gL~i~~~~~~~~~~~~~~~~~~~~~ 84 (273)
.+.++.+.+.+.|||+|+|+. |. + ..++ .++.+.+.+ .++.++. =.. .|... .+
T Consensus 68 ~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsv-KiR----~g~~~-~~--- 138 (318)
T TIGR00742 68 DLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTV-KHR----IGIDP-LD--- 138 (318)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEE-EEe----cCCCC-cc---
Confidence 567777778889999999995 31 1 0122 333333333 3454442 111 11211 11
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEecCCC
Q psy13372 85 EFRASLEKTIQYACALNIPAIHIMSGK 111 (273)
Q Consensus 85 ~~~~~~~~~i~~a~~lG~~~i~~~~G~ 111 (273)
..+.+...++.+...|+..|.+|+..
T Consensus 139 -~~~~~~~~~~~l~~~G~~~itvHgRt 164 (318)
T TIGR00742 139 -SYEFLCDFVEIVSGKGCQNFIVHARK 164 (318)
T ss_pred -hHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 23455677788889999999999764
No 360
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=69.10 E-value=87 Score=28.11 Aligned_cols=75 Identities=16% Similarity=0.082 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCCeEEecCC-CC---------CCCH---HHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFP-PV---------GVTL---EQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASL 90 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~-~~---------~~~~---~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (273)
.+.++.++++|+..|.+... .+ ..+. .+..+.++++|+...++..-.+ + |. ++.+.+
T Consensus 103 ~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~G----l---Pg---qt~~~~ 172 (370)
T PRK06294 103 ESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYG----L---PT---QSLSDF 172 (370)
T ss_pred HHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecC----C---CC---CCHHHH
Confidence 67789999999999988753 11 1222 3333456778886444433221 2 11 124677
Q ss_pred HHHHHHHHHcCCCeEEec
Q psy13372 91 EKTIQYACALNIPAIHIM 108 (273)
Q Consensus 91 ~~~i~~a~~lG~~~i~~~ 108 (273)
++.++.+..++..+|.+.
T Consensus 173 ~~~l~~~~~l~~~~is~y 190 (370)
T PRK06294 173 IVDLHQAITLPITHISLY 190 (370)
T ss_pred HHHHHHHHccCCCeEEEe
Confidence 788888889999887664
No 361
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=69.03 E-value=65 Score=27.43 Aligned_cols=111 Identities=5% Similarity=-0.024 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCCCC-CCCCCCCCCCcchHHHHHHHHHHHH-HHHhhCCcEEEEccCCCCCCCCc
Q psy13372 83 ESEFRASLEKTIQYACALNIPAIHIMSGKT-ESSRTQPIASEDPYTTLKENLIYAC-AELERHSLTALIEPVNQHSVPGY 160 (273)
Q Consensus 83 ~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~~~~~~~~~~~~~~~~~~l~~l~-~~a~~~gv~i~lE~~~~~~~~~~ 160 (273)
.....+.+...++.|..+|++.+++..-.. +..+ +++..+.+.+.+.+.. ..+.+.+|++-+= +.
T Consensus 53 H~~G~~~l~~~~~~~~~~gIk~lTvYaFS~eN~~R-----~~~Ev~~Lm~L~~~~l~~~~~~~~irv~~i--G~------ 119 (256)
T PRK14828 53 HRAGAAKIGEFLGWCDETDVNVVTLYLLSTDNLGR-----PSEELNPLLDIIEDVVRQLAPDGRWRVRHV--GS------ 119 (256)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEEEhhhcCC-----CHHHHHHHHHHHHHHHHHHHHhCCeEEEEE--CC------
Confidence 345678899999999999999999865433 2222 3344444444333333 2335677776643 21
Q ss_pred ccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhc
Q psy13372 161 YLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGAC 206 (273)
Q Consensus 161 ~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~ 206 (273)
.-.-+++..+.+++.+.....+=++++.++-.+-...++.++++.+
T Consensus 120 ~~~lp~~~~~~~~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~ 165 (256)
T PRK14828 120 LDLLPAPSANRLKEAEEATVGNDGIKVNVAVGYGGRQEIVDAVRSL 165 (256)
T ss_pred hhhCCHHHHHHHHHHHHhhcCCCCcEEEEEecCCCHHHHHHHHHHH
Confidence 1222344455553335544444455555544333233455555544
No 362
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=68.85 E-value=76 Score=27.38 Aligned_cols=130 Identities=12% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCeEEecCCCC-----CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFPPV-----GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYAC 98 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~-----~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~ 98 (273)
.+.++.+-+.||+.|++....- -...+++++..+++|+.+..=....+..- ..+.....+......+.++++
T Consensus 87 ~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d---~~~~~~g~s~t~~eea~~f~~ 163 (281)
T PRK06806 87 FEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSE---DGSEDIEMLLTSTTEAKRFAE 163 (281)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCcc---CCcccccceeCCHHHHHHHHH
Q ss_pred HcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHh
Q psy13372 99 ALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELR 176 (273)
Q Consensus 99 ~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~ 176 (273)
..|+.++.+-.|..-.. ....-..-.+.|+++.+.. ++.+++. +.-.-+.+...+++ +
T Consensus 164 ~tg~DyLAvaiG~~hg~------~~~~~~l~~~~L~~i~~~~---~iPlV~h--------G~SGI~~e~~~~~i---~ 221 (281)
T PRK06806 164 ETDVDALAVAIGNAHGM------YNGDPNLRFDRLQEINDVV---HIPLVLH--------GGSGISPEDFKKCI---Q 221 (281)
T ss_pred hhCCCEEEEccCCCCCC------CCCCCccCHHHHHHHHHhc---CCCEEEE--------CCCCCCHHHHHHHH---H
No 363
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=68.75 E-value=85 Score=27.86 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=52.4
Q ss_pred HHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC--CCeEEecCCCCCCCCCCCCCCcchHHH
Q psy13372 51 QLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN--IPAIHIMSGKTESSRTQPIASEDPYTT 128 (273)
Q Consensus 51 ~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG--~~~i~~~~G~~~~~~~~~~~~~~~~~~ 128 (273)
++.+.+++.++++..+++..+.. . .+++.....++.+.+.++.....| ++.+.+. |+.+.... + ....++.
T Consensus 143 ~~~~~~~~~~~~~~Glh~H~gs~--~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~G-GG~~~~y~-~--~~~~~~~ 215 (362)
T cd00622 143 ELLRRAKELGLNVVGVSFHVGSQ--C-TDPSAYVDAIADAREVFDEAAELGFKLKLLDIG-GGFPGSYD-G--VVPSFEE 215 (362)
T ss_pred HHHHHHHHcCCEEEEEEEeCCCC--C-CCHHHHHHHHHHHHHHHHHHHhcCCCcCEEEeC-CCcCcccC-C--CCCCHHH
Confidence 44455666789999888765411 1 245555566666666666666555 3345554 33433211 0 1234666
Q ss_pred HHHHHHHHHHHH-hhCCcEEEEcc
Q psy13372 129 LKENLIYACAEL-ERHSLTALIEP 151 (273)
Q Consensus 129 ~~~~l~~l~~~a-~~~gv~i~lE~ 151 (273)
..+.+++....- ....+++.+||
T Consensus 216 ~~~~i~~~~~~~~~~~~~~l~~Ep 239 (362)
T cd00622 216 IAAVINRALDEYFPDEGVRIIAEP 239 (362)
T ss_pred HHHHHHHHHHHhCCcCCCeEEEeC
Confidence 677666655432 22267899997
No 364
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=68.71 E-value=34 Score=30.19 Aligned_cols=88 Identities=10% Similarity=0.130 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcc--------hHHHHHHHHHHHHHHHhhCCcEEEEccCCCCC
Q psy13372 85 EFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASED--------PYTTLKENLIYACAELERHSLTALIEPVNQHS 156 (273)
Q Consensus 85 ~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~--------~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~ 156 (273)
...+.+.+.++.+.+.|++.+.+.+|..+... .+. .+..+.+.++++++.+.+.|+...+.+
T Consensus 41 ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~-----~~~~~~~~~~~g~~~~~~~i~~i~~~~~~~g~~~~~~~----- 110 (336)
T PRK06245 41 LSPEEVKEILRRGADAGCTEALFTFGEVPDES-----YERIKEQLAEMGYSSILEYLYDLCELALEEGLLPHTNA----- 110 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCccc-----hhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCCCccccC-----
Confidence 45677888888889999999888766553220 011 135677888888888877766543332
Q ss_pred CCCcccCCHHHHHHHHHHHhhcCCCceeEeeeccc
Q psy13372 157 VPGYYLSSFRVAERLIRELRAHGISNVQLQFDFFN 191 (273)
Q Consensus 157 ~~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h 191 (273)
+ .-+.+.+ +.+ ++++ ..+++.++++.
T Consensus 111 --~--~lt~e~i-~~L---k~ag-~~l~~~~et~~ 136 (336)
T PRK06245 111 --G--ILTREEM-EKL---KEVN-ASMGLMLEQTS 136 (336)
T ss_pred --C--CCCHHHH-HHH---HHhC-CCCCCCccccc
Confidence 2 2244443 344 4543 34566666654
No 365
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=68.66 E-value=81 Score=27.61 Aligned_cols=137 Identities=12% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCC-eEEecC--------------CCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHH
Q psy13372 24 LDKYRVAAELGFR-YIESWF--------------PPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRA 88 (273)
Q Consensus 24 ~~~l~~~~~~G~~-~vEl~~--------------~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (273)
++.++.++++|+. .|++.. .....+..+..+.++++|+.+...-. +...-....++++
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~~~i-------~G~P~~se~ea~e 189 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGAGVKAYLL-------FKPPFLSEKEAIA 189 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEEEEE-------ecCCCCChhhhHH
Q ss_pred HHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHH----------HHHHHHHHHhhCCcEEEEccCCCCCC-
Q psy13372 89 SLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKE----------NLIYACAELERHSLTALIEPVNQHSV- 157 (273)
Q Consensus 89 ~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~----------~l~~l~~~a~~~gv~i~lE~~~~~~~- 157 (273)
.+.+.++.+..++ .++.+++-.+..+ + .++...+ +..+++..++..+..+.--|.+....
T Consensus 190 d~~~ti~~~~~l~-~~vs~~~l~v~~g------T--~l~~~~~~G~~~pp~lws~~e~l~e~~~~~~~~~~d~~g~~~~r 260 (313)
T TIGR01210 190 DMISSIRKCIPVT-DTVSINPTNVQKG------T--LVEFLWNRGLYRPPWLWSVAEVLKEAKKIGAEVLSDPVGAGSDR 260 (313)
T ss_pred HHHHHHHHHHhcC-CcEEEECCEEeCC------C--HHHHHHHcCCCCCCCHHHHHHHHHHHHhhCCeEEecCCCCCCcC
Q ss_pred -CCcccCCHHHHHHHHHHHhhcC
Q psy13372 158 -PGYYLSSFRVAERLIRELRAHG 179 (273)
Q Consensus 158 -~~~~~~~~~~~~~li~~~~~~~ 179 (273)
|++....-....+.| ++++
T Consensus 261 g~~nc~~c~~~~~~~~---~~~~ 280 (313)
T TIGR01210 261 GAHNCGKCDKRVKEAI---RKFS 280 (313)
T ss_pred CCcCcchhhHHHHHHH---HHhc
No 366
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=68.63 E-value=70 Score=26.83 Aligned_cols=61 Identities=11% Similarity=0.048 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHH
Q psy13372 89 SLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVA 168 (273)
Q Consensus 89 ~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~ 168 (273)
...+.++.+...|+..+.+|.- +. + ..+.+.++.+.++++|+...++-.+ .++.+.+
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dl--p~--------e-----~~~~~~~~~~~~~~~Gl~~~~~v~p--------~T~~e~l 145 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDL--LI--------D-----YPDDLEKYVEIIKNKGLKPVFFTSP--------KFPDLLI 145 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCC--CC--------C-----cHHHHHHHHHHHHHcCCCEEEEECC--------CCCHHHH
Confidence 4556788888999999999731 11 1 1134667889999999998888632 2345566
Q ss_pred HHHH
Q psy13372 169 ERLI 172 (273)
Q Consensus 169 ~~li 172 (273)
..++
T Consensus 146 ~~~~ 149 (244)
T PRK13125 146 HRLS 149 (244)
T ss_pred HHHH
Confidence 6667
No 367
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=68.31 E-value=41 Score=29.48 Aligned_cols=119 Identities=7% Similarity=0.032 Sum_probs=65.7
Q ss_pred HHHHHHHHHcCCCeEEecCCC-C-CCC---HHHHHHHHHHcCCeeEE-EecCCccccCCCCCchhHHHHHHHHHHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFPP-V-GVT---LEQLVAAQTRHGLKQVL-INTEVDENFGYAAVKGKESEFRASLEKTIQYA 97 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~-~-~~~---~~~~~~~l~~~gL~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 97 (273)
.+.+..+-++||+.|.+.... + +.. .+++.+....+|+.+-. ++.-.+...+.... ..+.....-..+.++.
T Consensus 87 ~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~--~~~~~~TdPeeA~~Fv 164 (307)
T PRK05835 87 FESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVD--EKDAVLVNPKEAEQFV 164 (307)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccc--cccccCCCHHHHHHHH
Confidence 455667778999999999752 1 122 47888889999998874 33221111110000 0011123345677778
Q ss_pred HHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 98 CALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 98 ~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
++.|+..+-+-.|..=........+.-.++ .|+++ .+..++.|+|+-
T Consensus 165 ~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~----~L~~I---~~~~~iPLVLHG 211 (307)
T PRK05835 165 KESQVDYLAPAIGTSHGAFKFKGEPKLDFE----RLQEV---KRLTNIPLVLHG 211 (307)
T ss_pred HhhCCCEEEEccCccccccCCCCCCccCHH----HHHHH---HHHhCCCEEEeC
Confidence 888999987766654211100000223333 34443 445589999985
No 368
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=68.26 E-value=81 Score=27.42 Aligned_cols=130 Identities=15% Similarity=0.049 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCC---CCH----HHHHHHHHHcCCeeEEE-ecCCccccCCCCCchhHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVG---VTL----EQLVAAQTRHGLKQVLI-NTEVDENFGYAAVKGKESEFRASLEKT 93 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~---~~~----~~~~~~l~~~gL~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (273)
.+...++++.+.|.+||=+.+..++ .+. +-++...+..+=++..+ ++ +.+ .+...+.
T Consensus 29 ~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv------~~~---------t~~~i~~ 93 (303)
T PRK03620 29 AYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGA------GGG---------TAQAIEY 93 (303)
T ss_pred HHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEec------CCC---------HHHHHHH
Confidence 4677788889999999988865221 222 22223333333222222 21 011 2345567
Q ss_pred HHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHH
Q psy13372 94 IQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIR 173 (273)
Q Consensus 94 i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~ 173 (273)
++.|+.+|+..+.+.+..... ...+.+.++++.+++. .++.+.+-|. ++ ..-+++...++.
T Consensus 94 ~~~a~~~Gadav~~~pP~y~~---------~~~~~i~~~f~~va~~---~~lpi~lYn~-----~g-~~l~~~~l~~L~- 154 (303)
T PRK03620 94 AQAAERAGADGILLLPPYLTE---------APQEGLAAHVEAVCKS---TDLGVIVYNR-----DN-AVLTADTLARLA- 154 (303)
T ss_pred HHHHHHhCCCEEEECCCCCCC---------CCHHHHHHHHHHHHHh---CCCCEEEEcC-----CC-CCCCHHHHHHHH-
Confidence 788899999998876543311 1235677777777664 4677777773 22 233566666676
Q ss_pred HHhhcCCCceeEeeec
Q psy13372 174 ELRAHGISNVQLQFDF 189 (273)
Q Consensus 174 ~~~~~~~~~~g~~~D~ 189 (273)
+++ |++.-.=|.
T Consensus 155 --~~~--pni~giK~s 166 (303)
T PRK03620 155 --ERC--PNLVGFKDG 166 (303)
T ss_pred --hhC--CCEEEEEeC
Confidence 564 665444443
No 369
>PLN02705 beta-amylase
Probab=68.25 E-value=8 Score=36.72 Aligned_cols=46 Identities=9% Similarity=-0.141 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCC-----------CCCHHHHHHHHHHcCCeeEEEe
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPV-----------GVTLEQLVAAQTRHGLKQVLIN 67 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~-----------~~~~~~~~~~l~~~gL~i~~~~ 67 (273)
.+...|+.++.+|.+||++..+++ -....++.++++++||++..+.
T Consensus 269 al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVm 325 (681)
T PLN02705 269 GVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKLQVVM 325 (681)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEE
Confidence 688899999999999999885432 1225899999999999997543
No 370
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=68.13 E-value=40 Score=28.10 Aligned_cols=45 Identities=20% Similarity=0.059 Sum_probs=29.0
Q ss_pred CCCCcccccc----cccccccc-cccCHHHHHHHHHHcCCCeEEecCCCC
Q psy13372 1 MAAPSFKLAA----NLTLLFND-LAANYLDKYRVAAELGFRYIESWFPPV 45 (273)
Q Consensus 1 ~~~~~~k~~~----~~~~~~~~-~~~~~~~~l~~~~~~G~~~vEl~~~~~ 45 (273)
|+.|+...=+ |+.....+ .+.+-.+....+...|+++||+..+.+
T Consensus 4 m~~PLs~YfI~SSHNTYL~g~Ql~~~Ss~~~y~~aL~~GcRcvElD~wdg 53 (226)
T cd08558 4 MTQPLSHYFISSSHNTYLTGDQLTGESSVEAYIRALLRGCRCVELDCWDG 53 (226)
T ss_pred CCccHHHhhhcccccccccCCccCCccCHHHHHHHHHhCCcEEEEEeecC
Confidence 6667655433 34323333 234667888888889999999987643
No 371
>PRK14567 triosephosphate isomerase; Provisional
Probab=67.82 E-value=36 Score=28.89 Aligned_cols=78 Identities=14% Similarity=0.075 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHH---HhhCCcEEEEccCCCCCCCCcccCC
Q psy13372 88 ASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAE---LERHSLTALIEPVNQHSVPGYYLSS 164 (273)
Q Consensus 88 ~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---a~~~gv~i~lE~~~~~~~~~~~~~~ 164 (273)
+.+.+-++.|...|...|.+ .|.....+. .....+.+.+.|..+.+- ..-..+.|++||.+-. ...-..|
T Consensus 105 ~~v~~Kv~~al~~gl~pI~C-iGEt~eere----~g~~~~vv~~Ql~~~l~~i~~~~~~~ivIAYEPvWAI--GTG~~as 177 (253)
T PRK14567 105 EDVFKKLNKIIDTTITPVVC-IGESLDDRQ----SGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAI--GTGVVAS 177 (253)
T ss_pred HHHHHHHHHHHHCCCEEEEE-cCCcHHHHH----cCCHHHHHHHHHHHHHccCCHHHhCCEEEEECCHHHh--CCCCCCC
Confidence 34556666777777776655 354322211 234445555556555532 2225689999996543 3335677
Q ss_pred HHHHHHHH
Q psy13372 165 FRVAERLI 172 (273)
Q Consensus 165 ~~~~~~li 172 (273)
++++.++.
T Consensus 178 ~e~i~~~~ 185 (253)
T PRK14567 178 LEQIQETH 185 (253)
T ss_pred HHHHHHHH
Confidence 88887776
No 372
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=67.77 E-value=78 Score=27.04 Aligned_cols=203 Identities=15% Similarity=0.047 Sum_probs=97.2
Q ss_pred HHHHHHHHHcCCCeEEecCCCC-CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCch-hHHHHHHHHHHH----HHH-
Q psy13372 24 LDKYRVAAELGFRYIESWFPPV-GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKG-KESEFRASLEKT----IQY- 96 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----i~~- 96 (273)
.+.++.+++.|...+=-....+ ..+.+.+.++.+++|+.+.......... ..+. ......+.+.+. +..
T Consensus 35 ~~~~~~~~~~Gvttiv~~~~~~~~~~~~~~~~~~~~~g~~v~~~~G~hp~~----~~~~~~~~~~~~~l~~~~~~~l~~~ 110 (293)
T cd00530 35 KEELKRFRAHGGRTIVDATPPGIGRDVEKLAEVARATGVNIVAATGFYKDA----FYPEWVRLRSVEELTDMLIREIEEG 110 (293)
T ss_pred HHHHHHHHHcCCCeEEEcCCcccCcCHHHHHHHHHHhCCcEEEecccCCCc----cChHHHhhCCHHHHHHHHHHHHHhc
Confidence 4456677889998774433322 2567889999999998766432211101 0011 111111222221 111
Q ss_pred HHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHh
Q psy13372 97 ACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELR 176 (273)
Q Consensus 97 a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~ 176 (273)
+..-+++...+ |..+.+ . ...+...+.|++.+++|++.|+.+.++.... -....+.++++ +
T Consensus 111 ~~~~~i~~~~I--GEigld------~-~~~~~q~~~f~~~~~lA~~~~~Pv~iH~~~~-------~~~~~~~l~~l---~ 171 (293)
T cd00530 111 IEGTGIKAGII--KEAGGS------P-AITPLEEKVLRAAARAQKETGVPISTHTQAG-------LTMGLEQLRIL---E 171 (293)
T ss_pred cccCCcCceEE--EEeecC------C-CCCHHHHHHHHHHHHHHHHHCCeEEEcCCCC-------ccccHHHHHHH---H
Confidence 11112222111 222111 1 1234456778899999999999999996321 12445666777 6
Q ss_pred hcCCCceeEeeecccccccCCChHHHHHhcCCcceeEEeccCCCCCCCCCCCcccHHHHHHHHHHcCCCceEEEeee
Q psy13372 177 AHGISNVQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAPDRQEPHARGEIDYAYVFELLAREGYEGYVGLEYK 253 (273)
Q Consensus 177 ~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~~vHi~d~~~~~~~g~~G~id~~~i~~~L~~~gy~g~~~lE~~ 253 (273)
..+-+.-.+. +.|..+.+ ++ +.++++.++=.++-+.-.......|..+.-.-...++.+.+.|+...+++|-.
T Consensus 172 ~~g~~~~~~v--i~H~~~~~-~~-~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~ill~TD 244 (293)
T cd00530 172 EEGVDPSKVV--IGHLDRND-DP-DYLLKIAALGAYLEFDGIGKDKIFGYPSDETRADAVKALIDEGYGDRLLLSHD 244 (293)
T ss_pred HcCCChhheE--EeCCCCCC-CH-HHHHHHHhCCCEEEeCCCCcccccCCCCHHHHHHHHHHHHHCCCcCCEEEeCC
Confidence 6542221111 34655333 33 33444444334444432111010011011123444555566787667888854
No 373
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=67.40 E-value=79 Score=27.00 Aligned_cols=110 Identities=13% Similarity=0.000 Sum_probs=55.7
Q ss_pred cCHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHH-HHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHH
Q psy13372 21 ANYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAA-QTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACA 99 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~-l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 99 (273)
.+++..++.+.+.|.++|....-- ++.+... -.+.++-+- ++.. ..+.+++ ..+.+...++-|..
T Consensus 43 ~d~e~~v~~v~~~g~dav~~~~G~----~~~~~~~y~~dvplivk-l~~~----t~l~~~~-----~~~~~~~~ve~ai~ 108 (265)
T COG1830 43 EDPENIVAKVAEAGADAVAMTPGI----ARSVHRGYAHDVPLIVK-LNGS----TSLSPDP-----NDQVLVATVEDAIR 108 (265)
T ss_pred cCHHHHHHHHHhcCCCEEEecHhH----HhhcCccccCCcCEEEE-eccc----cccCCCc-----ccceeeeeHHHHHh
Confidence 489999999999999999987310 0000000 001121111 1110 0111222 12334445555666
Q ss_pred cCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 100 LNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 100 lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
||+..+.++... +++ ++ .+.++.+.++...|.++|+.+.+++.+.
T Consensus 109 lgadAV~~~Vy~-Gse------~e---~~~i~~~~~v~~~a~~~Gmp~v~~~YpR 153 (265)
T COG1830 109 LGADAVGATVYV-GSE------TE---REMIENISQVVEDAHELGMPLVAWAYPR 153 (265)
T ss_pred CCCcEEEEEEec-CCc------ch---HHHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 777766554321 111 11 3556667777777777777777666543
No 374
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=67.33 E-value=93 Score=27.77 Aligned_cols=154 Identities=9% Similarity=-0.058 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHcCCCeEEecCC----C-CCC----------------CHHHHHHHHHHcCCeeEEEecCCccccCCCCCc
Q psy13372 22 NYLDKYRVAAELGFRYIESWFP----P-VGV----------------TLEQLVAAQTRHGLKQVLINTEVDENFGYAAVK 80 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~----~-~~~----------------~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~ 80 (273)
.+.-.++.+.+.+-.-|=-..+ + ... -..-++...+++++.+. +|.. -+.+...
T Consensus 28 ~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPVa-lHLD----Hg~~~~~ 102 (345)
T cd00946 28 TINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGVPVV-LHTD----HCAKKLL 102 (345)
T ss_pred HHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEE-EECC----CCCCccc
Confidence 4566677777777765532222 1 111 12445667788887755 4432 1111111
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEcc--CCCCCCC
Q psy13372 81 GKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEP--VNQHSVP 158 (273)
Q Consensus 81 ~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~--~~~~~~~ 158 (273)
+..+..++.+...+..|...|...|=+- | +...++.-++.-++++++|+.+||.+--|- +......
T Consensus 103 ~~~~~~~~a~~~~~~~a~~~GftSVMiD-g-----------S~lp~eENI~~TkevVe~Ah~~gvsVEaElG~igg~ed~ 170 (345)
T cd00946 103 PWFDGLLEADEEYFKQHGEPLFSSHMLD-L-----------SEEPLEENIEICKKYLERMAKINMWLEMEIGITGGEEDG 170 (345)
T ss_pred hhhHHHHHHHHHHHHHhccCCCceEEee-C-----------CCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCcccC
Confidence 1223333333344455666788777542 2 234577788889999999999999877774 2111000
Q ss_pred --------CcccCCHHHHHHHHHHHhhc----CCCceeEeeeccccccc
Q psy13372 159 --------GYYLSSFRVAERLIRELRAH----GISNVQLQFDFFNAQRI 195 (273)
Q Consensus 159 --------~~~~~~~~~~~~li~~~~~~----~~~~~g~~~D~~h~~~~ 195 (273)
..+.++++++.+++ ++. +-..+.+.+=+.|-.+.
T Consensus 171 ~~~~~~~~~~~yTdPeeA~~Fv---~~t~~~tgvD~LAvaiGt~HG~Y~ 216 (345)
T cd00946 171 VDNSGVDNAELYTQPEDVWYVY---EALSKISPNFSIAAAFGNVHGVYK 216 (345)
T ss_pred cccccccccccCCCHHHHHHHH---HHhccCCCceeeeeeccccccCCC
Confidence 13478999999999 876 33556777777777665
No 375
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=67.19 E-value=99 Score=28.32 Aligned_cols=54 Identities=15% Similarity=-0.003 Sum_probs=31.3
Q ss_pred HHHHHHHHc--CCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC--CCeEEecC
Q psy13372 51 QLVAAQTRH--GLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN--IPAIHIMS 109 (273)
Q Consensus 51 ~~~~~l~~~--gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG--~~~i~~~~ 109 (273)
++.+.+++. ++++..++++.+ . .+.+...+.++.+.+.++.....| .+.|.+..
T Consensus 155 ~~~~~i~~~~~~l~l~Glh~H~g----s-~~~~~~~~~~~~~~~~~~~l~~~g~~~~~idiGG 212 (423)
T cd06842 155 TALERLAQLRERVRLVGFHFHLD----G-YSAAQRVAALQECLPLIDRARALGLAPRFIDIGG 212 (423)
T ss_pred HHHHHHHhcCCCCeEEEEEEEcC----C-CCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEeCC
Confidence 444556666 899988887643 2 134445555555656555555555 44555543
No 376
>KOG0369|consensus
Probab=67.16 E-value=43 Score=32.57 Aligned_cols=98 Identities=9% Similarity=0.092 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN 101 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG 101 (273)
.++++++.+++.+.|.|.....+- +....+.++..++|+..+. +.|++-+..=+.. .+=.+|-+.|
T Consensus 94 ~ideii~iak~~~vdavHPGYGFL-SErsdFA~av~~AGi~fiG------------PspeVi~~mGDKv-~AR~~Ai~ag 159 (1176)
T KOG0369|consen 94 AIDEIISIAKKHNVDAVHPGYGFL-SERSDFAQAVQDAGIRFIG------------PSPEVIDSMGDKV-AARAIAIEAG 159 (1176)
T ss_pred hHHHHHHHHHHcCCCeecCCcccc-ccchHHHHHHHhcCceEeC------------CCHHHHHHhhhHH-HHHHHHHHcC
Confidence 578999999999999998765543 4567888889999988542 3355443322222 2223344556
Q ss_pred CCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 102 IPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 102 ~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
++.+ ||..++ ++...+..+++++||..+.+-.
T Consensus 160 VpvV---PGTpgP---------------itt~~EA~eF~k~yG~PvI~KA 191 (1176)
T KOG0369|consen 160 VPVV---PGTPGP---------------ITTVEEALEFVKEYGLPVIIKA 191 (1176)
T ss_pred CCcc---CCCCCC---------------cccHHHHHHHHHhcCCcEEEee
Confidence 5543 454422 2345677889999999888875
No 377
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=67.11 E-value=94 Score=27.76 Aligned_cols=126 Identities=12% Similarity=-0.001 Sum_probs=73.4
Q ss_pred HHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHH
Q psy13372 50 EQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTL 129 (273)
Q Consensus 50 ~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~ 129 (273)
..++...+++.+.+. ++.. -+.+..-+.-..+++.-...+..+-+.|...|=+- | +...++.-
T Consensus 82 ~~v~~~A~~~~VPVa-lHLD----Hg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiD-g-----------S~lpfEeN 144 (350)
T PRK09197 82 KHVHEVAEHYGVPVI-LHTD----HCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMID-L-----------SEEPLEEN 144 (350)
T ss_pred HHHHHHHHHCCCCEE-EECC----CCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEee-C-----------CCCCHHHH
Confidence 345666777877655 4432 11110011222222322333333444455555331 1 33457788
Q ss_pred HHHHHHHHHHHhhCCcEEEEcc--CCCCCC--------CCcccCCHHHHHHHHHHHhhcCC----CceeEeeeccccccc
Q psy13372 130 KENLIYACAELERHSLTALIEP--VNQHSV--------PGYYLSSFRVAERLIRELRAHGI----SNVQLQFDFFNAQRI 195 (273)
Q Consensus 130 ~~~l~~l~~~a~~~gv~i~lE~--~~~~~~--------~~~~~~~~~~~~~li~~~~~~~~----~~~g~~~D~~h~~~~ 195 (273)
++..++++++|+.+||.+--|- +..... .....++++++.+++ ++.+- ..+.+.+=+.|-.+.
T Consensus 145 I~~TkevVe~Ah~~GvsVEaELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv---~~Tgv~~~~D~LAvaiGt~HG~Yk 221 (350)
T PRK09197 145 IEICSKYLERMAKAGMTLEIELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYAY---EALGKISGRFTIAASFGNVHGVYK 221 (350)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeccCCCcCCccccccccccccCCHHHHHHHH---HHhCCCCcceEEeeecccccCCcC
Confidence 8899999999999999777664 211100 113478999999999 88764 567777777777665
No 378
>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=66.60 E-value=1.5e+02 Score=31.36 Aligned_cols=117 Identities=10% Similarity=0.069 Sum_probs=65.9
Q ss_pred HHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHc----C---CCeEEecCCCCCCCCCCCCCCcchH
Q psy13372 54 AAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACAL----N---IPAIHIMSGKTESSRTQPIASEDPY 126 (273)
Q Consensus 54 ~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l----G---~~~i~~~~G~~~~~~~~~~~~~~~~ 126 (273)
+.+++.|+..+ +.+- ++. ..+.+..+...+.+.++|+.-..- + ...|.+-........+ +...+..+
T Consensus 193 ~~l~~~G~~~s-~D~L--GE~--~~t~~~A~~~~~~y~~~i~~i~~~~~~~~~~~~~~iSvKlSalg~~~~-~~~~~~~~ 266 (1208)
T PRK11905 193 RELEARGYRYS-YDML--GEA--ARTAADAERYYRDYERAIHAIGKAATGRGVYDGPGISVKLSALHPRYE-RAQRERVM 266 (1208)
T ss_pred HHHHhCCCEEE-EEec--cCC--cCCHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCeEEEEccccCcchh-hhhHhhHH
Confidence 44567787744 2221 121 123445555556666666654433 1 3455554333322111 11134556
Q ss_pred HHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCC-------CceeEee
Q psy13372 127 TTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGI-------SNVQLQF 187 (273)
Q Consensus 127 ~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~g~~~ 187 (273)
+.+.+++.+++..|+++|+.+.|--.. ....+-+++++ +++.. +++|+++
T Consensus 267 ~~l~~~l~~l~~~A~~~~~~l~IDaEe--------~~~~~~tL~l~---~~l~~~~~~~~~~~~Givl 323 (1208)
T PRK11905 267 AELLPRLKALALLAKAYDIGLNIDAEE--------ADRLELSLDLL---EALCSDPDLAGWNGIGFVV 323 (1208)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeCCC--------ccchHHHHHHH---HHHhcCcccccCCCceEEE
Confidence 778999999999999999999988632 12346667777 44432 4578764
No 379
>COG4294 Uve UV damage repair endonuclease [DNA replication, recombination, and repair]
Probab=66.49 E-value=36 Score=29.50 Aligned_cols=66 Identities=12% Similarity=0.075 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCC-CcchHHHHHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 85 EFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIA-SEDPYTTLKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 85 ~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
..+..+.++++.+..-|++..++-+.-++-. +.|.+ --...+.+.+.|.++++++.++++++.++|
T Consensus 70 ~Nl~~l~r~l~~~~~~~I~lyRlSSsLfPla-~h~~~~g~~~l~~~~~eL~evGe~a~~~~~Rl~~HP 136 (347)
T COG4294 70 QNLLNLIRLLEYNHAHGIRLYRLSSSLFPLA-DHADTKGWYTLEFIQSELEEVGELANKHNHRLTMHP 136 (347)
T ss_pred HHHHHHHHHHHHHHhcCceEEEecccccccc-cCccchhHHHHHHHHHHHHHHHHHHHhhCceeeecC
Confidence 3466788889999999999999876555322 11110 122355677889999999999999999998
No 380
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=66.43 E-value=11 Score=33.25 Aligned_cols=64 Identities=9% Similarity=0.087 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHcCCCeEEecCCCCCC-CCCCCCCCcchH------------HHHHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 87 RASLEKTIQYACALNIPAIHIMSGKTES-SRTQPIASEDPY------------TTLKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 87 ~~~~~~~i~~a~~lG~~~i~~~~G~~~~-~~~~~~~~~~~~------------~~~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
++.+++.|+.++.++-+.+++|...... ...-+. .++.. -...+-+++++++|+++||+|..|-
T Consensus 17 ~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~-~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPei 93 (351)
T PF00728_consen 17 VDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKS-YPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPEI 93 (351)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBST-STHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCC-CccccccCccccccccccCCHHHHHHHHHHHHHcCCceeeec
Confidence 6789999999999999999998643210 000000 01111 2344779999999999999999995
No 381
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=66.29 E-value=94 Score=27.45 Aligned_cols=103 Identities=10% Similarity=-0.028 Sum_probs=62.0
Q ss_pred cCHHHHHHHHHHcCCCeEEecCCCC----CCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHH
Q psy13372 21 ANYLDKYRVAAELGFRYIESWFPPV----GVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQY 96 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~~~~----~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 96 (273)
.+.+|+++.++.++-.|+-+.+-.. +...+-++.+-++-|=.... |.+. .|...++ ..++.
T Consensus 65 ~~~eDii~ea~~~~a~GasiTGGdPl~~ieR~~~~ir~LK~efG~~fHi-HLYT---~g~~~~~-----------e~l~~ 129 (353)
T COG2108 65 KSVEDIIEEAKLMDALGASITGGDPLLEIERTVEYIRLLKDEFGEDFHI-HLYT---TGILATE-----------EALKA 129 (353)
T ss_pred CcHHHHHHHHHHhccccccccCCChHHHHHHHHHHHHHHHHhhccceeE-EEee---ccccCCH-----------HHHHH
Confidence 4789999999999999999986422 12223334444444444432 2221 1122222 35555
Q ss_pred HHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 97 ACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 97 a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
....|..-|++||+.+ .. ...+..+ +.+..|+++|+.+++|.
T Consensus 130 L~eAGLDEIRfHp~~~-~~--------~~~e~~i----~~l~~A~~~g~dvG~Ei 171 (353)
T COG2108 130 LAEAGLDEIRFHPPRP-GS--------KSSEKYI----ENLKIAKKYGMDVGVEI 171 (353)
T ss_pred HHhCCCCeEEecCCCc-cc--------cccHHHH----HHHHHHHHhCccceeec
Confidence 6778999999999822 11 1222333 44567889999999996
No 382
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=66.26 E-value=36 Score=29.01 Aligned_cols=82 Identities=18% Similarity=0.147 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCC--ccccCCCCCchhHHHHHHHHHHHHHHHHHcC
Q psy13372 24 LDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEV--DENFGYAAVKGKESEFRASLEKTIQYACALN 101 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG 101 (273)
-++++.+++.|+=.+-+. .+.++-++ +.++|..+.+.|+-. ++..|. ......+++.+.++++.+.|.+.+
T Consensus 140 Vemi~~A~~~gl~T~~yv-----f~~e~A~~-M~~AGaDiiv~H~GlT~gG~~Ga-~~~~sl~~a~~~~~~i~~aa~~v~ 212 (268)
T PF09370_consen 140 VEMIRKAHEKGLFTTAYV-----FNEEQARA-MAEAGADIIVAHMGLTTGGSIGA-KTALSLEEAAERIQEIFDAARAVN 212 (268)
T ss_dssp HHHHHHHHHTT-EE--EE------SHHHHHH-HHHHT-SEEEEE-SS-----------S--HHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHCCCeeeeee-----cCHHHHHH-HHHcCCCEEEecCCccCCCCcCc-cccCCHHHHHHHHHHHHHHHHHhC
Confidence 356777788887554443 33445555 448899999887631 122222 233467788999999999999999
Q ss_pred CCeEEecCCCC
Q psy13372 102 IPAIHIMSGKT 112 (273)
Q Consensus 102 ~~~i~~~~G~~ 112 (273)
-..|++..|++
T Consensus 213 ~dii~l~hGGP 223 (268)
T PF09370_consen 213 PDIIVLCHGGP 223 (268)
T ss_dssp TT-EEEEECTT
T ss_pred CCeEEEEeCCC
Confidence 99998877765
No 383
>PRK05434 phosphoglyceromutase; Provisional
Probab=66.22 E-value=1e+02 Score=29.10 Aligned_cols=109 Identities=16% Similarity=0.113 Sum_probs=64.4
Q ss_pred ccccccccCHHHHHHHHHHcCCCeEEecC---CCCC----CCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHH
Q psy13372 14 LLFNDLAANYLDKYRVAAELGFRYIESWF---PPVG----VTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEF 86 (273)
Q Consensus 14 ~~~~~~~~~~~~~l~~~~~~G~~~vEl~~---~~~~----~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~ 86 (273)
.++.+. .+.+.++.+++.| ..+.+.+ +.+- .....+.+.+++.|++=+.++.+.++.. ..|...
T Consensus 91 ~~~~n~--~~~~~~~~~~~~~-~~lHl~GL~SdggVHsh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD---~~p~s~--- 161 (507)
T PRK05434 91 SFFENP--ALLDAIDKAKKNG-GALHLMGLLSDGGVHSHIDHLFALLELAKEEGVKKVYVHAFLDGRD---TPPKSA--- 161 (507)
T ss_pred CcccCH--HHHHHHHHHHhcC-CeEEEEEeccCCCcccHHHHHHHHHHHHHHcCCCEEEEEEecCCCC---CCchhH---
Confidence 344444 6888999998887 6666664 2211 1246667778899995454555444332 234433
Q ss_pred HHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHH
Q psy13372 87 RASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYA 136 (273)
Q Consensus 87 ~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l 136 (273)
+.++++.-+..+++|+-.|....|+.-.. +.+..|+++...++-+
T Consensus 162 ~~~i~~l~~~~~~~~~~~iasv~GRyyam-----DRd~rw~rv~~a~~~~ 206 (507)
T PRK05434 162 LGYLEELEAKLAELGVGRIASVSGRYYAM-----DRDKRWDRVEKAYDAL 206 (507)
T ss_pred HHHHHHHHHHHHHhCCeeEEEEecccccc-----ccccchHHHHHHHHHH
Confidence 45666666666778887777777775332 1344466555554444
No 384
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=66.02 E-value=55 Score=25.78 Aligned_cols=79 Identities=18% Similarity=0.108 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCC-CCC------HHHHHHHHHH--cCCeeEEEecCCccccCCCCCchhHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPV-GVT------LEQLVAAQTR--HGLKQVLINTEVDENFGYAAVKGKESEFRASLEK 92 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~-~~~------~~~~~~~l~~--~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (273)
...+..+.++++|.++|.+..|+. ..+ .+.+++..+. .++.+...+.+.. . .. .+.+.+
T Consensus 66 ~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~----~-~~-------~~~~~~ 133 (201)
T cd00945 66 VKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRG----L-KT-------ADEIAK 133 (201)
T ss_pred HHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCC----C-CC-------HHHHHH
Confidence 456667888999999999986631 111 3555566665 4888776655421 1 01 245566
Q ss_pred HHHHHHHcCCCeEEecCCCC
Q psy13372 93 TIQYACALNIPAIHIMSGKT 112 (273)
Q Consensus 93 ~i~~a~~lG~~~i~~~~G~~ 112 (273)
.++.+...|+..|...+|..
T Consensus 134 ~~~~~~~~g~~~iK~~~~~~ 153 (201)
T cd00945 134 AARIAAEAGADFIKTSTGFG 153 (201)
T ss_pred HHHHHHHhCCCEEEeCCCCC
Confidence 67777789999999877644
No 385
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=66.02 E-value=42 Score=25.69 Aligned_cols=80 Identities=8% Similarity=-0.121 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhcCC
Q psy13372 129 LKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACRD 208 (273)
Q Consensus 129 ~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~ 208 (273)
+.+-.+++.+.|++.|+.+-+=- .+...++++.+ .+.....-|+.++.+-+.-..--+.|+++.+.-
T Consensus 27 l~~i~~~~~~~a~~~g~~v~~~Q----------SN~EGelid~I---~~a~~~~dgiIINpga~thtS~Ai~DAl~~~~~ 93 (140)
T PF01220_consen 27 LEDIEQKCKETAAELGVEVEFFQ----------SNHEGELIDWI---HEARDDVDGIIINPGAYTHTSIAIRDALKAISI 93 (140)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEE-----------SSHHHHHHHH---HHHTCTTSEEEEE-GGGGHT-HHHHHHHHCCTS
T ss_pred HHHHHHHHHHHHHHCCCeEEEEe----------cCCHHHHHHHH---HHHHhhCCEEEEccchhccccHHHHHHHHcCCC
Confidence 33444555677888898865442 33456667777 666545689999997664334457889999987
Q ss_pred cceeEEeccCCCC
Q psy13372 209 LIGHVQIAQAPDR 221 (273)
Q Consensus 209 ~i~~vHi~d~~~~ 221 (273)
-+.-||+++...|
T Consensus 94 P~vEVHiSNi~~R 106 (140)
T PF01220_consen 94 PVVEVHISNIHAR 106 (140)
T ss_dssp -EEEEESS-GGGS
T ss_pred CEEEEEcCCcccc
Confidence 8899999986444
No 386
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=65.93 E-value=34 Score=29.45 Aligned_cols=63 Identities=16% Similarity=0.101 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCCCC-CCCCCCCCCCcchHHHHH----HHHHHHHH--HHhhCCcEEEEc
Q psy13372 83 ESEFRASLEKTIQYACALNIPAIHIMSGKT-ESSRTQPIASEDPYTTLK----ENLIYACA--ELERHSLTALIE 150 (273)
Q Consensus 83 ~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~~~~~~~~~~~~~~~~----~~l~~l~~--~a~~~gv~i~lE 150 (273)
.....+.+...++.|..+|++.+++..... +..+ ++...+.+. +.++++++ ...+.||++-+=
T Consensus 67 H~~G~~~l~~i~~~c~~lGIk~lTvYaFS~EN~~R-----~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~irir~i 136 (275)
T PRK14835 67 HEFGVQKAYEVLEWCLELGIPTVTIWVFSTDNFSR-----SPAEVETLMNLFEREARRMAVDPRIHANRVRVRAI 136 (275)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEEEccccCC-----CHHHHHHHHHHHHHHHHHHhchhhhhhCCeEEEEe
Confidence 455678899999999999999999865433 2222 333444443 44444432 345678876643
No 387
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=65.89 E-value=1e+02 Score=27.75 Aligned_cols=54 Identities=9% Similarity=0.107 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEE-EEccCC
Q psy13372 87 RASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTA-LIEPVN 153 (273)
Q Consensus 87 ~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i-~lE~~~ 153 (273)
.+.+.+.|+.|.+.|...+.+........ .. +.+.++++++++.|+.+ .+|-++
T Consensus 184 ~~~vl~~I~~a~~~G~~~vkin~vv~~g~------N~-------~Ei~~li~~a~~~gi~vr~ie~mP 238 (373)
T PLN02951 184 HDRVLESIDTAIELGYNPVKVNCVVMRGF------ND-------DEICDFVELTRDKPINVRFIEFMP 238 (373)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEecCCC------CH-------HHHHHHHHHHHhCCCeEEEEEccc
Confidence 36777888888888875443322111111 11 23677788888888765 345544
No 388
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=65.85 E-value=88 Score=26.97 Aligned_cols=129 Identities=15% Similarity=0.055 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCC---CCH----HHHHHHHHHcC--CeeEEEecCCccccCCCCCchhHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVG---VTL----EQLVAAQTRHG--LKQVLINTEVDENFGYAAVKGKESEFRASLEK 92 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~---~~~----~~~~~~l~~~g--L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (273)
.+...++++.+.|.++|=+.+..++ .+. +-++..++..+ +.+.. ++ +.+ .+...+
T Consensus 22 ~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~-gv------~~~---------t~~~i~ 85 (289)
T cd00951 22 AYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLA-GA------GYG---------TATAIA 85 (289)
T ss_pred HHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEE-ec------CCC---------HHHHHH
Confidence 4677788889999999998865221 122 22223333332 43332 11 011 134456
Q ss_pred HHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHH
Q psy13372 93 TIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLI 172 (273)
Q Consensus 93 ~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li 172 (273)
.++.|+.+|+..+.+.+..... ...+.++++++.+++. .++.+.+-|.. +. .-+++...++.
T Consensus 86 ~a~~a~~~Gad~v~~~pP~y~~---------~~~~~i~~~f~~v~~~---~~~pi~lYn~~-----g~-~l~~~~l~~L~ 147 (289)
T cd00951 86 YAQAAEKAGADGILLLPPYLTE---------APQEGLYAHVEAVCKS---TDLGVIVYNRA-----NA-VLTADSLARLA 147 (289)
T ss_pred HHHHHHHhCCCEEEECCCCCCC---------CCHHHHHHHHHHHHhc---CCCCEEEEeCC-----CC-CCCHHHHHHHH
Confidence 7888899999998776543311 1245677777777663 46888887732 22 23566666666
Q ss_pred HHHhhcCCCceeEeeec
Q psy13372 173 RELRAHGISNVQLQFDF 189 (273)
Q Consensus 173 ~~~~~~~~~~~g~~~D~ 189 (273)
++. ||+--.=|.
T Consensus 148 ---~~~--pnivgiKds 159 (289)
T cd00951 148 ---ERC--PNLVGFKDG 159 (289)
T ss_pred ---hcC--CCEEEEEeC
Confidence 534 675444443
No 389
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=65.82 E-value=77 Score=26.32 Aligned_cols=142 Identities=18% Similarity=0.088 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCC---CCCHHHHHHHHHHcCCeeEEEecCCccccC---CCC----Cch----------
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPV---GVTLEQLVAAQTRHGLKQVLINTEVDENFG---YAA----VKG---------- 81 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~---~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~---~~~----~~~---------- 81 (273)
+-...+.++++.|+.-.-+.+.|+ ....+..+++.++.|+.-..+.+..-...+ +.. .|+
T Consensus 14 DStt~l~~a~~~~~ev~alsfdYGQrh~~Ele~A~~iak~lgv~~~iid~~~~~~~~~saLtd~~~~vp~~~~~~~~~p~ 93 (222)
T COG0603 14 DSTTCLAWAKKEGYEVHALTFDYGQRHRKELEAAKELAKKLGVPHHIIDVDLLGEIGGSALTDDSIDVPKYEFAEEEIPA 93 (222)
T ss_pred hHHHHHHHHHhcCCEEEEEEeeCCCCcHHHHHHHHHHHHHcCCCeEEechhHHhhcCCCcCcCCCccccccccccccCcc
Confidence 667788899999988888888875 223566677888888777655432111010 100 011
Q ss_pred --hHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCC
Q psy13372 82 --KESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPG 159 (273)
Q Consensus 82 --~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~ 159 (273)
+..+..-.+.=+.-+|.++|++.|.+.. -..+.. ..++....+++++.++..++-..|+++ ++. |-
T Consensus 94 t~VP~RN~iflsiA~~~Ae~~g~~~I~~Gv--~~~D~s---gYPDcrpefi~a~~~~~~l~~~~~~~~-i~a------Pl 161 (222)
T COG0603 94 TFVPARNLIFLSIAAAYAEALGADAIIIGV--NEEDFS---GYPDCRPEFIEALNEALNLGTEKGVRI-IHA------PL 161 (222)
T ss_pred eEeccccHHHHHHHHHHHHHcCCCeEEEEe--cccccC---CCCCCCHHHHHHHHHHHHhhccCCccE-EeC------Ce
Confidence 1112233455567788999999988732 211110 156778899999999999999999998 443 11
Q ss_pred cccCCHHHHHHHHHHHhhcC
Q psy13372 160 YYLSSFRVAERLIRELRAHG 179 (273)
Q Consensus 160 ~~~~~~~~~~~li~~~~~~~ 179 (273)
.--+..+++++- .+++
T Consensus 162 -~~l~Ka~iv~l~---~elg 177 (222)
T COG0603 162 -MELTKAEIVKLA---DELG 177 (222)
T ss_pred -eeccHHHHHHHH---HHhC
Confidence 234667777777 5543
No 390
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=65.69 E-value=75 Score=27.75 Aligned_cols=145 Identities=9% Similarity=0.038 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHH
Q psy13372 88 ASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRV 167 (273)
Q Consensus 88 ~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~ 167 (273)
+...+.++.+..+|++.+++.++..+.- .+...+.+.+.++++.+..- ++. +|.+.+ . +..+ .+
T Consensus 94 eei~~~a~~~~~~GlkevvLTsv~~ddl------~d~g~~~l~~li~~I~~~~p--~i~--Ievl~~----d-~~g~-~e 157 (302)
T TIGR00510 94 EEPAKLAETIKDMGLKYVVITSVDRDDL------EDGGASHLAECIEAIREKLP--NIK--IETLVP----D-FRGN-IA 157 (302)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeecCCCc------ccccHHHHHHHHHHHHhcCC--CCE--EEEeCC----c-ccCC-HH
Confidence 5577888888999999998876654221 11223344444444433222 233 333322 1 1222 33
Q ss_pred HHHHHHHHhhcCCCceeEeeecccc----cccCCChHHH---HHhcCCcceeEEeccCCCCCCCCCCCcccHHHHHHHHH
Q psy13372 168 AERLIRELRAHGISNVQLQFDFFNA----QRICGDLTHT---FGACRDLIGHVQIAQAPDRQEPHARGEIDYAYVFELLA 240 (273)
Q Consensus 168 ~~~li~~~~~~~~~~~g~~~D~~h~----~~~~~~~~~~---i~~~~~~i~~vHi~d~~~~~~~g~~G~id~~~i~~~L~ 240 (273)
.++.+ .+.+..-+...+.+..- ...+.++.+. ++.+......+.++-. --...|+ -.-++.+.+..|+
T Consensus 158 ~l~~l---~~aG~dv~~hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~Tg-iIVGlGE-Teee~~etl~~Lr 232 (302)
T TIGR00510 158 ALDIL---LDAPPDVYNHNLETVERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSG-IMVGLGE-TNEEIKQTLKDLR 232 (302)
T ss_pred HHHHH---HHcCchhhcccccchHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecce-EEEECCC-CHHHHHHHHHHHH
Confidence 45555 55543334444443311 1122333332 2222222222333311 0011256 6667889999999
Q ss_pred HcCCCceEEEeee
Q psy13372 241 REGYEGYVGLEYK 253 (273)
Q Consensus 241 ~~gy~g~~~lE~~ 253 (273)
+.|++-..+.-|.
T Consensus 233 elg~d~v~igqYl 245 (302)
T TIGR00510 233 DHGVTMVTLGQYL 245 (302)
T ss_pred hcCCCEEEeeccc
Confidence 9998854444443
No 391
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=65.60 E-value=31 Score=28.70 Aligned_cols=104 Identities=13% Similarity=0.109 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHcCCCeEEecC---CCCC-CCHH---HHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWF---PPVG-VTLE---QLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTI 94 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~---~~~~-~~~~---~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (273)
.+.+.++.+++.| ..+.+.+ +.+. +..+ .+.+++++.|++-+.++.+.++.. ..|.. +..+++...
T Consensus 15 ~l~~~~~~~k~~~-~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRD---t~P~S---~~~yl~~l~ 87 (223)
T PF06415_consen 15 VLLEAIEHAKKNG-GRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRD---TPPKS---ALKYLEELE 87 (223)
T ss_dssp HHHHHHHHHCCTT---EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSS---S-TTT---HHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCC---CCcch---HHHHHHHHH
Confidence 5666666666665 3455443 2111 2333 333455666766444444333221 22332 234555555
Q ss_pred HHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHH
Q psy13372 95 QYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYAC 137 (273)
Q Consensus 95 ~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~ 137 (273)
+...++|.-.|...+|+.=.. +.+..|+++...+..++
T Consensus 88 ~~l~~~~~g~IAsv~GRyyaM-----DRD~rWeRv~~Ay~alv 125 (223)
T PF06415_consen 88 EKLAEIGIGRIASVSGRYYAM-----DRDKRWERVEKAYDALV 125 (223)
T ss_dssp HHHHHHTCTEEEEEEECCCCT-------TS-HHHHHHHHHHHC
T ss_pred HHHHhhCCceEEEEeceeeee-----ccccCHHHHHHHHHHHh
Confidence 555566665665555654222 14455666665555443
No 392
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=65.52 E-value=56 Score=24.60 Aligned_cols=94 Identities=10% Similarity=0.149 Sum_probs=59.4
Q ss_pred HHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCCCeEEec
Q psy13372 29 VAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIPAIHIM 108 (273)
Q Consensus 29 ~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~ 108 (273)
.++.+||+-|.+-.. .+++++.+...+++-.+..++...+ . +...+++.++..++.|.+.+.+.
T Consensus 22 ~L~~~GfeVidLG~~---v~~e~~v~aa~~~~adiVglS~L~t----~---------~~~~~~~~~~~l~~~gl~~v~vi 85 (128)
T cd02072 22 AFTEAGFNVVNLGVL---SPQEEFIDAAIETDADAILVSSLYG----H---------GEIDCKGLREKCDEAGLKDILLY 85 (128)
T ss_pred HHHHCCCEEEECCCC---CCHHHHHHHHHHcCCCEEEEecccc----C---------CHHHHHHHHHHHHHCCCCCCeEE
Confidence 557889999888543 5688999999999998887754311 1 13566777777888887555554
Q ss_pred CCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 109 SGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 109 ~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
.|+...- ++..++... +.+++.|+.-.+.|
T Consensus 86 vGG~~~i------~~~d~~~~~-------~~L~~~Gv~~vf~p 115 (128)
T cd02072 86 VGGNLVV------GKQDFEDVE-------KRFKEMGFDRVFAP 115 (128)
T ss_pred EECCCCC------ChhhhHHHH-------HHHHHcCCCEEECc
Confidence 4543211 122222222 34556898877776
No 393
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=65.51 E-value=52 Score=24.22 Aligned_cols=101 Identities=16% Similarity=0.189 Sum_probs=65.6
Q ss_pred HHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCCCeEE
Q psy13372 27 YRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIPAIH 106 (273)
Q Consensus 27 l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~ 106 (273)
...++..||+.+-+... .+.+++.+.+.+.+-.+..++... ......++..++..++.|.+.+.
T Consensus 20 ~~~l~~~G~~vi~lG~~---vp~e~~~~~a~~~~~d~V~iS~~~-------------~~~~~~~~~~~~~L~~~~~~~i~ 83 (122)
T cd02071 20 ARALRDAGFEVIYTGLR---QTPEEIVEAAIQEDVDVIGLSSLS-------------GGHMTLFPEVIELLRELGAGDIL 83 (122)
T ss_pred HHHHHHCCCEEEECCCC---CCHHHHHHHHHHcCCCEEEEcccc-------------hhhHHHHHHHHHHHHhcCCCCCE
Confidence 34577889998887533 567888888999998888775421 12345677788888888886666
Q ss_pred ecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHH
Q psy13372 107 IMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLI 172 (273)
Q Consensus 107 ~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li 172 (273)
+..|+.... + ..+.+.+.|+.-.+.+ ..++++.+.++
T Consensus 84 i~~GG~~~~--------~-----------~~~~~~~~G~d~~~~~----------~~~~~~~~~~~ 120 (122)
T cd02071 84 VVGGGIIPP--------E-----------DYELLKEMGVAEIFGP----------GTSIEEIIDKI 120 (122)
T ss_pred EEEECCCCH--------H-----------HHHHHHHCCCCEEECC----------CCCHHHHHHHH
Confidence 665653211 1 1244556888877775 33566666655
No 394
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=65.34 E-value=99 Score=27.40 Aligned_cols=109 Identities=11% Similarity=0.052 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCCCeEEecCC-CC-----------CCC---HHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFP-PV-----------GVT---LEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRA 88 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~-~~-----------~~~---~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (273)
++.++.++++|.|.|.++.. .| .-+ +.++.+.+.++++.+...-+. -+|.+ | +
T Consensus 204 ~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvlIaPv~---lPG~N-D--------~ 271 (414)
T COG2100 204 KKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVLIAPVW---LPGVN-D--------D 271 (414)
T ss_pred HHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCCEEEeeee---cCCcC-h--------H
Confidence 56688999999999999864 11 123 345666777888887643221 22332 1 3
Q ss_pred HHHHHHHHHHHcCCCeEEec----------CCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcE-EEEccC
Q psy13372 89 SLEKTIQYACALNIPAIHIM----------SGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLT-ALIEPV 152 (273)
Q Consensus 89 ~~~~~i~~a~~lG~~~i~~~----------~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-i~lE~~ 152 (273)
.+.+.|+.|.++|+..=--+ .|..+.. .....|+. ..+.|.++=+++|++ +.+-|.
T Consensus 272 E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp~~-----~k~~~fke---FYrwLrelEketg~kpLilkP~ 338 (414)
T COG2100 272 EMPKIIEWAREIGAGKKWPPLGIQKYIPYKFGRKPVI-----AKVWPFKE---FYRWLRELEKETGVKPLILKPG 338 (414)
T ss_pred HHHHHHHHHHHhCCCCCCCCcceEEeeeecccCCccc-----cccCcHHH---HHHHHHHHHHHhCCCccccChh
Confidence 57788999999887532111 2322211 13334444 556666777888988 777664
No 395
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=65.21 E-value=39 Score=31.41 Aligned_cols=15 Identities=13% Similarity=0.060 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHcCCC
Q psy13372 89 SLEKTIQYACALNIP 103 (273)
Q Consensus 89 ~~~~~i~~a~~lG~~ 103 (273)
.+.++++.+++.|..
T Consensus 324 ~~~~~i~~~~~~Gi~ 338 (472)
T TIGR03471 324 IARRFTRDCHKLGIK 338 (472)
T ss_pred HHHHHHHHHHHCCCe
Confidence 344444555555544
No 396
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=65.21 E-value=44 Score=29.39 Aligned_cols=98 Identities=13% Similarity=0.077 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCCCC-CCCCCCCCCCcchHHHHH----HHHHHH---HHHHhhCCcEEEEccCCC
Q psy13372 83 ESEFRASLEKTIQYACALNIPAIHIMSGKT-ESSRTQPIASEDPYTTLK----ENLIYA---CAELERHSLTALIEPVNQ 154 (273)
Q Consensus 83 ~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~~~~~~~~~~~~~~~~----~~l~~l---~~~a~~~gv~i~lE~~~~ 154 (273)
.....+.+++.++.|..+|++++++.+-.. ++.+ ++...+.+. +.+.+. .+...+.||++-+=- .
T Consensus 45 H~~G~~~l~~il~~c~~lGIk~lTlYAFStENwkR-----p~~EV~~Lm~L~~~~l~~~~~~~~~l~~~~irirviG--d 117 (322)
T PTZ00349 45 HFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNR-----SPEEIHFLFYLNLLILINEDFFFKFIKDNKIKIKIIG--N 117 (322)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhhCC-----CHHHHHHHHHHHHHHHHHhhhhHHHHHHCCCEEEEEe--C
Confidence 344567899999999999999999976443 2222 233333333 333333 456678898876532 1
Q ss_pred CCCCCcccCCHHHHHHHHHHHhhcCCCceeEeeeccccc
Q psy13372 155 HSVPGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQ 193 (273)
Q Consensus 155 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~ 193 (273)
.-.-++...+.+++.++....+=|+++.++--+
T Consensus 118 ------~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Y 150 (322)
T PTZ00349 118 ------LSYINDAYRKIIHDIEEKTENFDNILLNIFFSY 150 (322)
T ss_pred ------hhhCCHHHHHHHHHHHHHhCCCCCcEEEEEecC
Confidence 112234455555444555445556666654443
No 397
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=65.20 E-value=19 Score=29.97 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=42.1
Q ss_pred CCCCcccc----ccccccccccc-ccCHHHHHHHHHHcCCCeEEecCCCC---------------CCCHHHHHHHHHHcC
Q psy13372 1 MAAPSFKL----AANLTLLFNDL-AANYLDKYRVAAELGFRYIESWFPPV---------------GVTLEQLVAAQTRHG 60 (273)
Q Consensus 1 ~~~~~~k~----~~~~~~~~~~~-~~~~~~~l~~~~~~G~~~vEl~~~~~---------------~~~~~~~~~~l~~~g 60 (273)
|+.|+... +-|+.....++ +.+-.+.+..+.+.|+++||+..+.+ ....+.+.++++++.
T Consensus 4 M~~PLs~YfI~SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcR~vElD~wdg~dgePvV~Hg~tlts~i~f~dv~~~I~~~A 83 (229)
T cd08627 4 MNNPLSHYWISSSHNTYLTGDQFSSESSLEAYARCLRMGCRCIELDCWDGPDGMPVIYHGHTLTTKIKFSDVLHTIKEHA 83 (229)
T ss_pred ccchhhhheeecCcCccccCCccCCcccHHHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcCCCceEHHHHHHHHHHhh
Confidence 66777555 33453344442 34667888888899999999995421 123578888888887
Q ss_pred CeeE
Q psy13372 61 LKQV 64 (273)
Q Consensus 61 L~i~ 64 (273)
...+
T Consensus 84 F~~S 87 (229)
T cd08627 84 FVTS 87 (229)
T ss_pred ccCC
Confidence 6644
No 398
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=65.04 E-value=38 Score=29.57 Aligned_cols=95 Identities=13% Similarity=0.151 Sum_probs=60.4
Q ss_pred HHHHHHHHHHcCCeeEEEecCCccccCCCCCch-----hHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCC-CCCCCCCC
Q psy13372 49 LEQLVAAQTRHGLKQVLINTEVDENFGYAAVKG-----KESEFRASLEKTIQYACALNIPAIHIMSGKTES-SRTQPIAS 122 (273)
Q Consensus 49 ~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~-~~~~~~~~ 122 (273)
...+.+...++|+..--+..... .+ ++.|+ ......+.++..-+.+++.|. .+.+|++..-. ..+ .
T Consensus 50 l~~~l~~~~~~~I~~~R~sS~l~-P~--~~h~~~~~w~~~~~~~~~~~~~g~~~~~~~i-rls~Hp~y~inL~S~----~ 121 (303)
T PRK02308 50 LLRILKYNIAHGIGLFRLSSSLI-PL--ATHPELEGWDYIEPFKEELREIGEFIKEHNI-RLSFHPDQFVVLNSP----K 121 (303)
T ss_pred HHHHHHHHHHCCCCEEEcccCcC-CC--CCChhhcccCCCCCCHHHHHHHHHHHHHcCC-CeeccChhhhcCCCC----C
Confidence 34555566788877764443110 01 11111 112223566677777778899 78888876522 111 5
Q ss_pred cchHHHHHHHHHHHHHHHhhCCcE----EEEcc
Q psy13372 123 EDPYTTLKENLIYACAELERHSLT----ALIEP 151 (273)
Q Consensus 123 ~~~~~~~~~~l~~l~~~a~~~gv~----i~lE~ 151 (273)
++.++..++.|..-++.+...|+. +.++|
T Consensus 122 ~ev~e~Si~~L~~~~~~~~~lG~~~~~~vViHp 154 (303)
T PRK02308 122 PEVVENSIKDLEYHAKLLDLMGIDDSSKINIHV 154 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECC
Confidence 677889999999999999999987 77886
No 399
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=64.74 E-value=88 Score=26.61 Aligned_cols=46 Identities=28% Similarity=0.245 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHcCCCeEEecC-CCCCCCHHHHHHHHHHcCCeeEEEecC
Q psy13372 22 NYLDKYRVAAELGFRYIESWF-PPVGVTLEQLVAAQTRHGLKQVLINTE 69 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~-~~~~~~~~~~~~~l~~~gL~i~~~~~~ 69 (273)
.+++.++.++++|++|+=+.- |. ...+.+.+.++++||..+.+..+
T Consensus 105 G~e~f~~~~~~aGvdGviipDLp~--ee~~~~~~~~~~~gl~~I~lvap 151 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIPDLPP--EEAEELRAAAKKHGLDLIFLVAP 151 (258)
T ss_pred CHHHHHHHHHHcCCcEEEECCCCH--HHHHHHHHHHHHcCCcEEEEeCC
Confidence 789999999999999998852 22 35678889999999999987654
No 400
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=64.70 E-value=79 Score=26.03 Aligned_cols=111 Identities=10% Similarity=0.033 Sum_probs=63.2
Q ss_pred HHHHHHcCCCeEEecCCCC---CCC----HHHHHHHHHHc-CCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHH
Q psy13372 27 YRVAAELGFRYIESWFPPV---GVT----LEQLVAAQTRH-GLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYAC 98 (273)
Q Consensus 27 l~~~~~~G~~~vEl~~~~~---~~~----~~~~~~~l~~~-gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~ 98 (273)
.+.+.+.|.|.|++..++. ..+ .+++++..+.. |+.+-.+. +.+.-++ +.+.++++++.
T Consensus 76 ~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIl-----E~~~L~~--------~ei~~a~~ia~ 142 (211)
T TIGR00126 76 TKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVII-----ETGLLTD--------EEIRKACEICI 142 (211)
T ss_pred HHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEE-----ecCCCCH--------HHHHHHHHHHH
Confidence 4566788999999997742 111 24555555443 44333321 1111011 35678999999
Q ss_pred HcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHH
Q psy13372 99 ALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLI 172 (273)
Q Consensus 99 ~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li 172 (273)
.+|+.+|.+-+|..+... +.. -++.+++.+. .+.+|+.+ . -+.|.+++.+++
T Consensus 143 eaGADfvKTsTGf~~~ga-----t~~----dv~~m~~~v~--~~v~IKaa---------G--Girt~~~a~~~i 194 (211)
T TIGR00126 143 DAGADFVKTSTGFGAGGA-----TVE----DVRLMRNTVG--DTIGVKAS---------G--GVRTAEDAIAMI 194 (211)
T ss_pred HhCCCEEEeCCCCCCCCC-----CHH----HHHHHHHHhc--cCCeEEEe---------C--CCCCHHHHHHHH
Confidence 999999999888653331 111 1233333322 13344433 1 255889999999
No 401
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=64.65 E-value=46 Score=27.82 Aligned_cols=44 Identities=23% Similarity=0.178 Sum_probs=27.8
Q ss_pred CCCCcccccc----ccccccccc-ccCHHHHHHHHHHcCCCeEEecCCC
Q psy13372 1 MAAPSFKLAA----NLTLLFNDL-AANYLDKYRVAAELGFRYIESWFPP 44 (273)
Q Consensus 1 ~~~~~~k~~~----~~~~~~~~~-~~~~~~~l~~~~~~G~~~vEl~~~~ 44 (273)
|+.|+...-+ |+.....++ +.+-.+....+-..|+++||+..+.
T Consensus 4 m~~PLs~YfI~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wd 52 (231)
T cd08598 4 LSRPLNEYFISSSHNTYLLGRQLAGDSSVEGYIRALQRGCRCVEIDVWD 52 (231)
T ss_pred cccchHhheeeccccccccCCccCCccCHHHHHHHHHhCCcEEEEEeec
Confidence 6667655533 342333332 3466777888888899999998654
No 402
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=64.54 E-value=15 Score=31.96 Aligned_cols=43 Identities=12% Similarity=-0.052 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCCeEEecCCCC-CC-------CHHHHHHHHHHcCCeeEE
Q psy13372 23 YLDKYRVAAELGFRYIESWFPPV-GV-------TLEQLVAAQTRHGLKQVL 65 (273)
Q Consensus 23 ~~~~l~~~~~~G~~~vEl~~~~~-~~-------~~~~~~~~l~~~gL~i~~ 65 (273)
....++.+++.|||||.|.+.+. .. -++++++.+++.|+.++.
T Consensus 93 i~~iv~~~~~~~~dGidiD~E~~~~~d~~~~~~fl~eL~~~l~~~~~~lsv 143 (298)
T cd06549 93 IANIAAYLERNQADGIVLDFEELPADDLPKYVAFLSELRRRLPAQGKQLTV 143 (298)
T ss_pred HHHHHHHHHHhCCCCEEEecCCCChhHHHHHHHHHHHHHHHhhhcCcEEEE
Confidence 46778899999999999997642 11 147888888888877663
No 403
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=64.51 E-value=89 Score=26.58 Aligned_cols=135 Identities=10% Similarity=0.053 Sum_probs=83.6
Q ss_pred cccccCHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHH
Q psy13372 17 NDLAANYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQY 96 (273)
Q Consensus 17 ~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 96 (273)
..+..+.++.++.+++.|...+-..+... .+.+...++.+++.--..++++... . ..+..+..++.+.+.+..
T Consensus 13 ~~~~~d~~~vi~~a~~~gv~~~~~~g~~~-~~~~~~~~la~~y~~v~~~~G~HP~-~-----~~~~~~~~~~~l~~~~~~ 85 (256)
T COG0084 13 EEFDEDRDEVIARAREAGVKKMVVVGTDL-EDFKRALELAEKYPNVYAAVGVHPL-D-----ADEHSEEDLEELEQLAEH 85 (256)
T ss_pred hhhcCCHHHHHHHHHHcCCcEEEEeecCH-HHHHHHHHHHHhCCCeEEEEeeCCC-c-----cccccHHHHHHHHHHHhc
Confidence 33445889999999999998887776533 4566788889999844445554321 1 111223344444444433
Q ss_pred HHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHh
Q psy13372 97 ACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELR 176 (273)
Q Consensus 97 a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~ 176 (273)
.-+.+.+ |-.+-+.... ....++...+.+++-+++|++++..+.|++-. ..+++.+++ +
T Consensus 86 ----~~~vvaI--GEiGLDy~~~--~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~----------A~~d~~~iL---~ 144 (256)
T COG0084 86 ----HPKVVAI--GEIGLDYYWD--KEPDKERQEEVFEAQLELAKELNLPVIIHTRD----------AHEDTLEIL---K 144 (256)
T ss_pred ----CCCeEEE--EecccCcccc--ccccHHHHHHHHHHHHHHHHHcCCCEEEEccc----------cHHHHHHHH---H
Confidence 2333333 3332221100 11146677888999999999999999999732 356778888 7
Q ss_pred hcC
Q psy13372 177 AHG 179 (273)
Q Consensus 177 ~~~ 179 (273)
+..
T Consensus 145 ~~~ 147 (256)
T COG0084 145 EEG 147 (256)
T ss_pred hcC
Confidence 764
No 404
>PLN02429 triosephosphate isomerase
Probab=64.43 E-value=46 Score=29.25 Aligned_cols=78 Identities=15% Similarity=0.137 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHh-hCCcEEEEccCCCCCCCCcccCCHH
Q psy13372 88 ASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELE-RHSLTALIEPVNQHSVPGYYLSSFR 166 (273)
Q Consensus 88 ~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~-~~gv~i~lE~~~~~~~~~~~~~~~~ 166 (273)
+.+.+=+..|.+.|...|.+. |.....+. .....+.+.+.++.+++... ...|.|++||.+-. ...-..+++
T Consensus 167 ~~V~~Kv~~al~~GL~pIvCI-GE~l~ere----~g~t~~vi~~Ql~~~l~~v~~~~~ivIAYEPvWAI--GTGk~as~e 239 (315)
T PLN02429 167 EFIGKKAAYALSEGLGVIACI-GEKLEERE----AGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAI--GTGKVASPQ 239 (315)
T ss_pred HHHHHHHHHHHHCcCEEEEEc-CCCHHHHh----CCCHHHHHHHHHHHHHccCCcccceEEEECCHHHh--CCCCCCCHH
Confidence 344444555777777766653 54322211 33445555555555554332 24588999996542 233456777
Q ss_pred HHHHHH
Q psy13372 167 VAERLI 172 (273)
Q Consensus 167 ~~~~li 172 (273)
++.++.
T Consensus 240 ~~~~v~ 245 (315)
T PLN02429 240 QAQEVH 245 (315)
T ss_pred HHHHHH
Confidence 777666
No 405
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=64.39 E-value=83 Score=26.15 Aligned_cols=152 Identities=12% Similarity=0.001 Sum_probs=83.2
Q ss_pred HHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCee--EEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHc
Q psy13372 23 YLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQ--VLINTEVDENFGYAAVKGKESEFRASLEKTIQYACAL 100 (273)
Q Consensus 23 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l 100 (273)
..+.++.+.+.|++.||+.+.-. ...+.++++.++++-+. ..++. +-. + ++ ..++.|...
T Consensus 29 a~~~~~al~~gGi~~iEiT~~tp-~a~~~i~~l~~~~~~~~p~~~vGa---GTV-l--~~-----------e~a~~a~~a 90 (222)
T PRK07114 29 AKKVIKACYDGGARVFEFTNRGD-FAHEVFAELVKYAAKELPGMILGV---GSI-V--DA-----------ATAALYIQL 90 (222)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCC-cHHHHHHHHHHHHHhhCCCeEEee---EeC-c--CH-----------HHHHHHHHc
Confidence 44456677888999999998643 34555555543332211 11211 011 1 22 234556779
Q ss_pred CCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCC
Q psy13372 101 NIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGI 180 (273)
Q Consensus 101 G~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 180 (273)
|+++++.+. .. ..++++++++|+.+. |+ .-|+-|+.+.+ +.+.
T Consensus 91 GA~FiVsP~-~~---------------------~~v~~~~~~~~i~~i---------PG--~~TpsEi~~A~----~~Ga 133 (222)
T PRK07114 91 GANFIVTPL-FN---------------------PDIAKVCNRRKVPYS---------PG--CGSLSEIGYAE----ELGC 133 (222)
T ss_pred CCCEEECCC-CC---------------------HHHHHHHHHcCCCEe---------CC--CCCHHHHHHHH----HCCC
Confidence 999998742 11 146788889998877 44 34666766666 3444
Q ss_pred CceeEeeecccccccCCChHHHHHhcCCcceeEEeccCCCCCCCCCCCcccH--HHHHHHHHHcCCCc
Q psy13372 181 SNVQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAPDRQEPHARGEIDY--AYVFELLAREGYEG 246 (273)
Q Consensus 181 ~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~~vHi~d~~~~~~~g~~G~id~--~~i~~~L~~~gy~g 246 (273)
.-+++-. ....| ..+++.+..-+-++.+.= + |-++. ..+-+.|+ .|+..
T Consensus 134 ~~vKlFP----A~~~G---~~~ikal~~p~p~i~~~p--------t-GGV~~~~~n~~~yl~-aGa~a 184 (222)
T PRK07114 134 EIVKLFP----GSVYG---PGFVKAIKGPMPWTKIMP--------T-GGVEPTEENLKKWFG-AGVTC 184 (222)
T ss_pred CEEEECc----ccccC---HHHHHHHhccCCCCeEEe--------C-CCCCcchhcHHHHHh-CCCEE
Confidence 5555543 33323 345555543333333332 2 55554 55666666 66643
No 406
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=64.22 E-value=18 Score=34.84 Aligned_cols=61 Identities=18% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCeEEec----CCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESW----FPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACA 99 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~----~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 99 (273)
.+.+..++++||++||+. +|++ ...|-+.+....+.. .+|.. +.+++.|+.|++
T Consensus 168 ~~llpYl~elG~T~IELMPv~e~p~~-----------~sWGYq~~g~yAp~s-ryGtP----------edfk~fVD~aH~ 225 (628)
T COG0296 168 IELLPYLKELGITHIELMPVAEHPGD-----------RSWGYQGTGYYAPTS-RYGTP----------EDFKALVDAAHQ 225 (628)
T ss_pred HHHhHHHHHhCCCEEEEcccccCCCC-----------CCCCCCcceeccccc-cCCCH----------HHHHHHHHHHHH
Q ss_pred cCCCeEE
Q psy13372 100 LNIPAIH 106 (273)
Q Consensus 100 lG~~~i~ 106 (273)
.|+..|.
T Consensus 226 ~GIgViL 232 (628)
T COG0296 226 AGIGVIL 232 (628)
T ss_pred cCCEEEE
No 407
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=64.20 E-value=22 Score=28.01 Aligned_cols=65 Identities=11% Similarity=0.095 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHcCCCeEEec-CCCCCCCCCCCC--CCcchHHHHHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 86 FRASLEKTIQYACALNIPAIHIM-SGKTESSRTQPI--ASEDPYTTLKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 86 ~~~~~~~~i~~a~~lG~~~i~~~-~G~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
.-+..++.++..+++|+++|++. +|..+.... |. .+........+-|..+++.|.++|+++.+=.
T Consensus 18 ~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~y-ps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl 85 (166)
T PF14488_consen 18 TPAQWREEFRAMKAIGIDTLILQWTGYGGFAFY-PSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGL 85 (166)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEeecCCcccC-CccccCccccCCcccHHHHHHHHHHHcCCEEEEeC
Confidence 34678899999999999998774 333221100 10 0122233455678889999999999877654
No 408
>PLN02803 beta-amylase
Probab=64.18 E-value=13 Score=34.80 Aligned_cols=46 Identities=15% Similarity=-0.026 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCC-----------CCCHHHHHHHHHHcCCeeEEEe
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPV-----------GVTLEQLVAAQTRHGLKQVLIN 67 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~-----------~~~~~~~~~~l~~~gL~i~~~~ 67 (273)
.+...|+.++.+|.+||++..+++ -...+++.++++++||++..+-
T Consensus 108 ~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~vm 164 (548)
T PLN02803 108 AMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKLQVVM 164 (548)
T ss_pred HHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEE
Confidence 578899999999999999885432 1225899999999999997543
No 409
>KOG1643|consensus
Probab=64.14 E-value=80 Score=25.90 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHh-hCCcEEEEccCCCCCCCCcccCCHHHH
Q psy13372 90 LEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELE-RHSLTALIEPVNQHSVPGYYLSSFRVA 168 (273)
Q Consensus 90 ~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~-~~gv~i~lE~~~~~~~~~~~~~~~~~~ 168 (273)
+..-++.|-.-|.+.|.+. |..-.++. .....+-..+.|..+++... =.+|.|++||.+-. ...-..|++++
T Consensus 108 i~~K~~~Al~eGl~ViaCI-GE~leeRE----aG~t~dVv~~Ql~aiad~v~~w~niviAYEPVWAI--GTGk~atp~Qa 180 (247)
T KOG1643|consen 108 IADKTAHALAEGLKVIACI-GETLEERE----AGKTLDVVFRQLKAIADKVKDWSNIVIAYEPVWAI--GTGKTATPEQA 180 (247)
T ss_pred HHHHHHHHHHcCCeEEEEe-cccHHhhh----cCchHHHHHHHHHHHHHhcCCccceEEEeeceeee--cCCCCCCHHHH
Confidence 3344455555566655553 44322221 34556667777777777766 46799999997643 34468899999
Q ss_pred HHHHHHHhh
Q psy13372 169 ERLIRELRA 177 (273)
Q Consensus 169 ~~li~~~~~ 177 (273)
.++-.+++.
T Consensus 181 qEVh~~iR~ 189 (247)
T KOG1643|consen 181 QEVHAEIRK 189 (247)
T ss_pred HHHHHHHHH
Confidence 888844433
No 410
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=64.09 E-value=1e+02 Score=27.16 Aligned_cols=52 Identities=13% Similarity=0.054 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCCCceeEeeeccccc
Q psy13372 132 NLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQ 193 (273)
Q Consensus 132 ~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~ 193 (273)
.+++++++|+++|..+..... .+.+.+.++.+.|.+.+-|.=.+.+|..-..
T Consensus 163 n~~~i~~lA~~y~~~Vva~s~----------~Dln~ak~L~~~l~~~Gi~~edIviDP~~~~ 214 (319)
T PRK04452 163 NYKKIAAAAMAYGHAVIAWSP----------LDINLAKQLNILLTELGVPRERIVMDPTTGA 214 (319)
T ss_pred HHHHHHHHHHHhCCeEEEEcH----------HHHHHHHHHHHHHHHcCCCHHHEEEeCCccc
Confidence 488899999999998776641 2245555665444777666667899987653
No 411
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=63.98 E-value=1.1e+02 Score=28.08 Aligned_cols=58 Identities=9% Similarity=0.045 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCC--CeEEecCCCC-CCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcE-EEEcc
Q psy13372 90 LEKTIQYACALNI--PAIHIMSGKT-ESSRTQPIASEDPYTTLKENLIYACAELERHSLT-ALIEP 151 (273)
Q Consensus 90 ~~~~i~~a~~lG~--~~i~~~~G~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-i~lE~ 151 (273)
+.+..+.++..|. ..+.+|..+. +-... .+..++..++.|.+-++.|.+.|+. +.++|
T Consensus 178 ~~~f~~~~~~~gi~~~~i~~HapYlINLASp----d~e~rekSv~~~~~eL~rA~~LGa~~VV~HP 239 (413)
T PTZ00372 178 IDKFKENCKKYNYDPKFILPHGSYLINLANP----DKEKREKSYDAFLDDLQRCEQLGIKLYNFHP 239 (413)
T ss_pred HHHHHHHHHHcCCCcceEEeecCceecCCCC----CHHHHHHHHHHHHHHHHHHHHcCCCEEEECC
Confidence 3344455555554 4566676553 22211 4567888999999999999999997 77776
No 412
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=63.93 E-value=90 Score=26.41 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=53.8
Q ss_pred HHHHHHHHHcCCCeEEecCCCCCCC-CCCCCCCcchHHHHHHHHHHHHHHHhhCCc---EEEEccCCCCCCCCcccCCHH
Q psy13372 91 EKTIQYACALNIPAIHIMSGKTESS-RTQPIASEDPYTTLKENLIYACAELERHSL---TALIEPVNQHSVPGYYLSSFR 166 (273)
Q Consensus 91 ~~~i~~a~~lG~~~i~~~~G~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv---~i~lE~~~~~~~~~~~~~~~~ 166 (273)
...+++++..|+..|.+|....+.. ...+. ++...+...+.+.+..+.+.+.|| +|.+-|.- .+..+..
T Consensus 110 ~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~Gi~~~~IilDPg~------g~~k~~~ 182 (258)
T cd00423 110 PEMAPLAAEYGAPVVLMHMDGTPQTMQNNPY-YADVVDEVVEFLEERVEAATEAGIPPEDIILDPGI------GFGKTEE 182 (258)
T ss_pred hHHHHHHHHcCCCEEEECcCCCCcccccCCC-cchHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCC------CccCCHH
Confidence 4578889999999999986432211 11111 466778888999999999999997 58888832 1344666
Q ss_pred HHHHHHHHHhh
Q psy13372 167 VAERLIRELRA 177 (273)
Q Consensus 167 ~~~~li~~~~~ 177 (273)
+...+++.++.
T Consensus 183 ~~~~~l~~i~~ 193 (258)
T cd00423 183 HNLELLRRLDA 193 (258)
T ss_pred HHHHHHHHHHH
Confidence 66666633333
No 413
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=63.88 E-value=42 Score=31.09 Aligned_cols=111 Identities=13% Similarity=0.035 Sum_probs=63.3
Q ss_pred HHHHHHHHHcCCCeEEecCC-CC---------CCC---HHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFP-PV---------GVT---LEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASL 90 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~-~~---------~~~---~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (273)
++.++.++++|+..|.+... .+ ..+ ..+..+.++++|+...++..-.+ + |. ++.+.+
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~G----l---Pg---qt~e~~ 221 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYG----L---PH---QTVESF 221 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEe----C---CC---CCHHHH
Confidence 68899999999999999853 11 122 33444567778886333322111 2 11 124678
Q ss_pred HHHHHHHHHcCCCeEEecCCCC-CC----CCC-CCCCCcchHHHHHHHHHHHHHHHhhCCc
Q psy13372 91 EKTIQYACALNIPAIHIMSGKT-ES----SRT-QPIASEDPYTTLKENLIYACAELERHSL 145 (273)
Q Consensus 91 ~~~i~~a~~lG~~~i~~~~G~~-~~----~~~-~~~~~~~~~~~~~~~l~~l~~~a~~~gv 145 (273)
.+.++.+..+|...|.+..-.. +. ... ... .--..+...+-+..+.+...+.|-
T Consensus 222 ~~tl~~~~~l~p~~i~~y~l~~~p~~~~~~~~~~~~-~lp~~~~~~~~~~~~~~~L~~~Gy 281 (453)
T PRK13347 222 RETLDKVIALSPDRIAVFGYAHVPSRRKNQRLIDEA-ALPDAEERLRQARAVADRLLAAGY 281 (453)
T ss_pred HHHHHHHHhcCCCEEEEeccccccchhhHHhcCCcc-CCcCHHHHHHHHHHHHHHHHHCCC
Confidence 8899999999999987753211 10 000 000 001123445566667777778884
No 414
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=63.75 E-value=75 Score=25.42 Aligned_cols=180 Identities=12% Similarity=0.074 Sum_probs=93.3
Q ss_pred HHHHHHHHHcCCCeEEecCCCC-CCCHHHHHHHHHH-cCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC
Q psy13372 24 LDKYRVAAELGFRYIESWFPPV-GVTLEQLVAAQTR-HGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN 101 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~l~~-~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG 101 (273)
.+.++.+.+. ++.||+..++- ....+.++.+.+. .++.+..+... .++. ...++.+...|
T Consensus 16 ~~~~~~l~~~-i~~ieig~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v--------~~~~---------~~~~~~~~~aG 77 (202)
T cd04726 16 LELAKKVPDG-VDIIEAGTPLIKSEGMEAVRALREAFPDKIIVADLKT--------ADAG---------ALEAEMAFKAG 77 (202)
T ss_pred HHHHHHhhhc-CCEEEcCCHHHHHhCHHHHHHHHHHCCCCEEEEEEEe--------cccc---------HHHHHHHHhcC
Confidence 4444555555 99999976531 1234555555444 25655543221 1111 12347788999
Q ss_pred CCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCCC
Q psy13372 102 IPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGIS 181 (273)
Q Consensus 102 ~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 181 (273)
+..+.+|.-.. . +.+.++.+.++++|+.+.++-++ ..|+.+..+.+ ..+..
T Consensus 78 ad~i~~h~~~~---------~--------~~~~~~i~~~~~~g~~~~v~~~~--------~~t~~e~~~~~----~~~~d 128 (202)
T cd04726 78 ADIVTVLGAAP---------L--------STIKKAVKAAKKYGKEVQVDLIG--------VEDPEKRAKLL----KLGVD 128 (202)
T ss_pred CCEEEEEeeCC---------H--------HHHHHHHHHHHHcCCeEEEEEeC--------CCCHHHHHHHH----HCCCC
Confidence 99999985211 0 23455667788899999987322 23566766644 33445
Q ss_pred ceeEeeeccccccc-CCChHHHHHhcCCcceeEEeccCCCCCCCCCCCcccHHHHHHHHHHcCCCceEEEe-eecCCChH
Q psy13372 182 NVQLQFDFFNAQRI-CGDLTHTFGACRDLIGHVQIAQAPDRQEPHARGEIDYAYVFELLAREGYEGYVGLE-YKPQGNTK 259 (273)
Q Consensus 182 ~~g~~~D~~h~~~~-~~~~~~~i~~~~~~i~~vHi~d~~~~~~~g~~G~id~~~i~~~L~~~gy~g~~~lE-~~~~~~~~ 259 (273)
.+++..-. ..... .....+.++++... .+ .+..-.|-++. +-++.+.+.|.++.++-- +....++.
T Consensus 129 ~v~~~~~~-~~~~~~~~~~~~~i~~~~~~------~~----~~i~~~GGI~~-~~i~~~~~~Gad~vvvGsai~~~~d~~ 196 (202)
T cd04726 129 IVILHRGI-DAQAAGGWWPEDDLKKVKKL------LG----VKVAVAGGITP-DTLPEFKKAGADIVIVGRAITGAADPA 196 (202)
T ss_pred EEEEcCcc-cccccCCCCCHHHHHHHHhh------cC----CCEEEECCcCH-HHHHHHHhcCCCEEEEeehhcCCCCHH
Confidence 55553211 11111 12233444444322 11 11111155674 445566678998776554 33444554
Q ss_pred HHH
Q psy13372 260 EGL 262 (273)
Q Consensus 260 ~~~ 262 (273)
+.+
T Consensus 197 ~~~ 199 (202)
T cd04726 197 EAA 199 (202)
T ss_pred HHH
Confidence 443
No 415
>PLN02561 triosephosphate isomerase
Probab=63.69 E-value=44 Score=28.41 Aligned_cols=78 Identities=14% Similarity=0.116 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHh-hCCcEEEEccCCCCCCCCcccCCHH
Q psy13372 88 ASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELE-RHSLTALIEPVNQHSVPGYYLSSFR 166 (273)
Q Consensus 88 ~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~-~~gv~i~lE~~~~~~~~~~~~~~~~ 166 (273)
+.+.+-+..|...|...|.+ .|.....+. .....+.+.+.++.+++... ...+.|++||.+-. ...-..|++
T Consensus 108 ~~v~~Kv~~al~~gl~pIvC-vGE~~~er~----~~~~~~~v~~Ql~~~l~~v~~~~~iiIAYEPvWAI--GtG~~as~~ 180 (253)
T PLN02561 108 EFVGDKVAYALSQGLKVIAC-VGETLEQRE----SGSTMDVVAAQTKAIADKVSDWANVVLAYEPVWAI--GTGKVATPA 180 (253)
T ss_pred HHHHHHHHHHHHCcCEEEEE-cCCCHHHHh----cCCHHHHHHHHHHHHHhccccccceEEEECCHHHh--CCCCCCCHH
Confidence 34566677777788776655 354322211 33445555555665554332 25688999996532 233456777
Q ss_pred HHHHHH
Q psy13372 167 VAERLI 172 (273)
Q Consensus 167 ~~~~li 172 (273)
++.++.
T Consensus 181 ~~~~v~ 186 (253)
T PLN02561 181 QAQEVH 186 (253)
T ss_pred HHHHHH
Confidence 776666
No 416
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=63.62 E-value=42 Score=31.03 Aligned_cols=112 Identities=16% Similarity=0.121 Sum_probs=64.5
Q ss_pred HHHHHHHHHcCCCeEEecCC-CC---------CCC---HHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFP-PV---------GVT---LEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASL 90 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~-~~---------~~~---~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (273)
++.++.++++|+..|.+... .+ ..+ ..+..+.++++|+...++.+-. |+. . +..+.+
T Consensus 151 ~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~----GlP---g---qt~e~~ 220 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIY----GLP---K---QTKESF 220 (455)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEe----eCC---C---CCHHHH
Confidence 68899999999999999853 11 122 2344556778898633332211 121 1 124678
Q ss_pred HHHHHHHHHcCCCeEEecCCCC-----CCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCc
Q psy13372 91 EKTIQYACALNIPAIHIMSGKT-----ESSRTQPIASEDPYTTLKENLIYACAELERHSL 145 (273)
Q Consensus 91 ~~~i~~a~~lG~~~i~~~~G~~-----~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv 145 (273)
++.++.+.++|+..+.+.+-.. +.............+...+.+..+.+...+.|-
T Consensus 221 ~~tl~~~~~l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy 280 (455)
T TIGR00538 221 AKTLEKVAELNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY 280 (455)
T ss_pred HHHHHHHHhcCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 8899999999999987753211 000000000011234445566677777787785
No 417
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.46 E-value=60 Score=24.21 Aligned_cols=77 Identities=21% Similarity=0.197 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCCCeEEecCCCCC----CCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHH
Q psy13372 24 LDKYRVAAELGFRYIESWFPPVG----VTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACA 99 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~~----~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 99 (273)
.+-+..++..||..|=-+-|.++ -+...+++.++++||...-+ |.. ..+. .+..++.++++++.
T Consensus 18 ~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~i--PV~-~~~i------T~~dV~~f~~Al~e--- 85 (130)
T COG3453 18 PADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHI--PVT-GGGI------TEADVEAFQRALDE--- 85 (130)
T ss_pred HHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEe--ecC-CCCC------CHHHHHHHHHHHHH---
Confidence 34456778999999977777431 23589999999999996543 322 1112 12335555555554
Q ss_pred cCCCeE-EecCCCC
Q psy13372 100 LNIPAI-HIMSGKT 112 (273)
Q Consensus 100 lG~~~i-~~~~G~~ 112 (273)
.+-+.+ .+-+|.+
T Consensus 86 aegPVlayCrsGtR 99 (130)
T COG3453 86 AEGPVLAYCRSGTR 99 (130)
T ss_pred hCCCEEeeecCCch
Confidence 455554 3345544
No 418
>PRK11809 putA trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=63.33 E-value=1.6e+02 Score=31.40 Aligned_cols=116 Identities=12% Similarity=0.125 Sum_probs=65.3
Q ss_pred HHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHc----CC---CeEEecCCCCCCCCCCCCCCcchHHH
Q psy13372 56 QTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACAL----NI---PAIHIMSGKTESSRTQPIASEDPYTT 128 (273)
Q Consensus 56 l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l----G~---~~i~~~~G~~~~~~~~~~~~~~~~~~ 128 (273)
+++.|+..+ +.+- ++. ..+.+..+.+.+.+.++|+.-..- |. ..|.+.........+ +...+...+.
T Consensus 275 l~~~G~~~s-~D~L--GEa--a~t~~dA~~y~~~y~~~I~~i~~~~~~~~~~~~~~ISvKlSaL~~~~~-~~~~~~v~~~ 348 (1318)
T PRK11809 275 LEEKGFRYS-YDML--GEA--ALTEADAQAYLASYEQAIHAIGKASNGRGIYEGPGISIKLSALHPRYS-RAQYDRVMEE 348 (1318)
T ss_pred HHhCCCEEE-EEcc--cCC--cCCHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEeccccChhhh-HHHHhhhHHH
Confidence 677788754 2221 121 123455555555566666655542 11 455554333322110 0013344566
Q ss_pred HHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCC-------CceeEeee
Q psy13372 129 LKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGI-------SNVQLQFD 188 (273)
Q Consensus 129 ~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~g~~~D 188 (273)
+.+++++|+..|+++|+.+.|--.. ....+-+++++ +++.. +++|+++-
T Consensus 349 l~~rl~~L~~~A~~~~i~l~IDaEe--------~~~l~ltLdl~---~~l~~~~~~~~~~~~GivvQ 404 (1318)
T PRK11809 349 LYPRLKSLTLLARQYDIGINIDAEE--------ADRLEISLDLL---EKLCFEPELAGWNGIGFVIQ 404 (1318)
T ss_pred HHHHHHHHHHHHHhcCCEEEEeCCC--------CCchHHHHHHH---HHHHcCccccCCCCeEEEEe
Confidence 8889999999999999999887532 23346667777 54432 45788744
No 419
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=63.26 E-value=21 Score=31.12 Aligned_cols=57 Identities=2% Similarity=0.035 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 87 RASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 87 ~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
..++....++.+.+|+..+++. .++.. .........+.+.++++..+.+||++.|=.
T Consensus 56 ~~R~~~YARllASiGINgvvlN--NVNa~------~~~Lt~~~l~~v~~lAdvfRpYGIkv~LSv 112 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLN--NVNAN------PKLLTPEYLDKVARLADVFRPYGIKVYLSV 112 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S---SS--------CGGGSTTTHHHHHHHHHHHHHTT-EEEEEE
T ss_pred hhHHHHHHHHHhhcCCceEEec--ccccC------hhhcCHHHHHHHHHHHHHHhhcCCEEEEEe
Confidence 3567778888899999999884 33332 222233456778899999999999998864
No 420
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=63.16 E-value=1.1e+02 Score=27.31 Aligned_cols=92 Identities=11% Similarity=0.098 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHc-CCCeEEecCCCCCCCCCCCCCCcchHHH
Q psy13372 50 EQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACAL-NIPAIHIMSGKTESSRTQPIASEDPYTT 128 (273)
Q Consensus 50 ~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l-G~~~i~~~~G~~~~~~~~~~~~~~~~~~ 128 (273)
.++.+.+++.|+.+..++++.+.+. .+++.....++ .+.++++.+ ..+.|-+..| ++.... +....-.++.
T Consensus 159 ~~~l~~~~~~~l~l~GlhfH~GS~~---~~~~~~~~~~~---~~~~l~~~~~~~~~idiGGG-f~~~y~-~~~~~~~~~~ 230 (368)
T cd06840 159 DEARDLAKKAGIIVIGLHAHSGSGV---EDTDHWARHGD---YLASLARHFPAVRILNVGGG-LGIPEA-PGGRPIDLDA 230 (368)
T ss_pred HHHHHHHHhCCCcEEEEEEECCCCC---CCHHHHHHHHH---HHHHHHHhcCCCCEEEecCc-ccCCCC-CCCCCCCHHH
Confidence 4455566777999998887654221 23444443333 334444444 3566776544 433211 0001223566
Q ss_pred HHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 129 LKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 129 ~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
+.+.++++.+.. .++++.+||
T Consensus 231 ~~~~i~~~~~~~--~~~~l~~EP 251 (368)
T cd06840 231 LDAALAAAKAAH--PQYQLWMEP 251 (368)
T ss_pred HHHHHHHHHhhC--CCcEEEEec
Confidence 667776655432 369999998
No 421
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=62.98 E-value=26 Score=31.76 Aligned_cols=46 Identities=13% Similarity=-0.035 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHcCCCeEEecCCC-----------CCCCHHHHHHHHHHcCCeeEEEe
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPP-----------VGVTLEQLVAAQTRHGLKQVLIN 67 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~-----------~~~~~~~~~~~l~~~gL~i~~~~ 67 (273)
.+...|+.++.+|.++|++..++ +-...+++.+.+++.||++..+-
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~Y~~l~~~vr~~GLk~~~vm 73 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSGYRELFEMVRDAGLKLQVVM 73 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEE
Confidence 57889999999999999988532 11225899999999999998543
No 422
>PLN02161 beta-amylase
Probab=62.67 E-value=15 Score=34.29 Aligned_cols=45 Identities=16% Similarity=-0.047 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCC-----------CCCHHHHHHHHHHcCCeeEEE
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPV-----------GVTLEQLVAAQTRHGLKQVLI 66 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~-----------~~~~~~~~~~l~~~gL~i~~~ 66 (273)
.+...|+.++.+|.+||++..+++ -...+++.++++++||++..+
T Consensus 118 al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~v 173 (531)
T PLN02161 118 ALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLISEAGLKLHVA 173 (531)
T ss_pred HHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEEE
Confidence 588899999999999999885431 122589999999999999754
No 423
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=62.63 E-value=1.1e+02 Score=27.09 Aligned_cols=150 Identities=13% Similarity=0.153 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHcCCCeEEecCC---CC--CC---CHHHHHHHHHHcCCeeEE-EecCCc--cccC--------CC-CCch
Q psy13372 22 NYLDKYRVAAELGFRYIESWFP---PV--GV---TLEQLVAAQTRHGLKQVL-INTEVD--ENFG--------YA-AVKG 81 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~---~~--~~---~~~~~~~~l~~~gL~i~~-~~~~~~--~~~~--------~~-~~~~ 81 (273)
.-.+.++.+++.|+..|-++.. .+ .. ..-++.+.++++||++.. +|- .+ ..++ .. +..+
T Consensus 25 ~~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHY-SD~WaDPg~Q~~P~aW~~~~~~~ 103 (332)
T PF07745_consen 25 QEKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHY-SDFWADPGKQNKPAAWANLSFDQ 103 (332)
T ss_dssp SB--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-S-SSS--BTTB-B--TTCTSSSHHH
T ss_pred CCCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecc-cCCCCCCCCCCCCccCCCCCHHH
Confidence 4478999999999999998853 22 12 245777889999999973 442 22 1111 00 1133
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCe--EEecCCCC-CC--CCCCCCCCcchHHHHHHHHHHHHHHHhhCC--cEEEEccCCC
Q psy13372 82 KESEFRASLEKTIQYACALNIPA--IHIMSGKT-ES--SRTQPIASEDPYTTLKENLIYACAELERHS--LTALIEPVNQ 154 (273)
Q Consensus 82 ~~~~~~~~~~~~i~~a~~lG~~~--i~~~~G~~-~~--~~~~~~~~~~~~~~~~~~l~~l~~~a~~~g--v~i~lE~~~~ 154 (273)
-.+..-++.+..+...+..|+.- |.+ |.- .. -+ |......++++...|+.-.+..++.+ +++.++.-.
T Consensus 104 l~~~v~~yT~~vl~~l~~~G~~pd~VQV--GNEin~Gmlw--p~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~- 178 (332)
T PF07745_consen 104 LAKAVYDYTKDVLQALKAAGVTPDMVQV--GNEINNGMLW--PDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLAN- 178 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--ESEEEE--SSSGGGESTB--TTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES--
T ss_pred HHHHHHHHHHHHHHHHHHCCCCccEEEe--CccccccccC--cCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECC-
Confidence 45567788889999999999874 444 431 00 01 11145678888888888777777644 667766532
Q ss_pred CCCCCcccCCHHHHHHHHHHHhhcCCCceeEeeec
Q psy13372 155 HSVPGYYLSSFRVAERLIRELRAHGISNVQLQFDF 189 (273)
Q Consensus 155 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~ 189 (273)
..+.+....+++.|... |+-||+
T Consensus 179 -------~~~~~~~~~~f~~l~~~-----g~d~Dv 201 (332)
T PF07745_consen 179 -------GGDNDLYRWFFDNLKAA-----GVDFDV 201 (332)
T ss_dssp -------TTSHHHHHHHHHHHHHT-----TGG-SE
T ss_pred -------CCchHHHHHHHHHHHhc-----CCCcce
Confidence 22344556666333442 355555
No 424
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=62.48 E-value=46 Score=30.79 Aligned_cols=65 Identities=9% Similarity=0.057 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHcCCCeEEecCCCC-CCCC---CCCCCC----------------------------cchHHHHHHHHH
Q psy13372 87 RASLEKTIQYACALNIPAIHIMSGKT-ESSR---TQPIAS----------------------------EDPYTTLKENLI 134 (273)
Q Consensus 87 ~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~~---~~~~~~----------------------------~~~~~~~~~~l~ 134 (273)
++.+++.|+..+..+.+.+++|...- +... ..|.-+ ...--...+-++
T Consensus 21 ~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT~~di~ 100 (445)
T cd06569 21 KETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYSRADYI 100 (445)
T ss_pred HHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccCHHHHH
Confidence 67899999999999999999885321 1000 000000 000113567899
Q ss_pred HHHHHHhhCCcEEEEcc
Q psy13372 135 YACAELERHSLTALIEP 151 (273)
Q Consensus 135 ~l~~~a~~~gv~i~lE~ 151 (273)
+++++|+++||+|..|-
T Consensus 101 eiv~yA~~rgI~VIPEI 117 (445)
T cd06569 101 EILKYAKARHIEVIPEI 117 (445)
T ss_pred HHHHHHHHcCCEEEEcc
Confidence 99999999999999995
No 425
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=62.19 E-value=1e+02 Score=26.58 Aligned_cols=128 Identities=13% Similarity=0.046 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCC---CCH---HHHHH-HHHHcC--CeeEEEecCCccccCCCCCchhHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVG---VTL---EQLVA-AQTRHG--LKQVLINTEVDENFGYAAVKGKESEFRASLEK 92 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~---~~~---~~~~~-~l~~~g--L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (273)
.+...++.+.+.|.++|=+.+..++ .+. .++.+ ..+..+ +.+.. ++ +.+ .+...+
T Consensus 27 ~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~-gv------~~~---------t~~ai~ 90 (296)
T TIGR03249 27 AYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYT-GV------GGN---------TSDAIE 90 (296)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEE-ec------Ccc---------HHHHHH
Confidence 5777888999999999998865221 222 22222 233322 33322 11 110 234445
Q ss_pred HHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHH
Q psy13372 93 TIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLI 172 (273)
Q Consensus 93 ~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li 172 (273)
..+.|..+|+..+.+.+..... ...+.+.++++++++. .++.+.+-|. .+ ..-+++...++.
T Consensus 91 ~a~~a~~~Gadav~~~pP~y~~---------~s~~~i~~~f~~v~~a---~~~pvilYn~-----~g-~~l~~~~~~~La 152 (296)
T TIGR03249 91 IARLAEKAGADGYLLLPPYLIN---------GEQEGLYAHVEAVCES---TDLGVIVYQR-----DN-AVLNADTLERLA 152 (296)
T ss_pred HHHHHHHhCCCEEEECCCCCCC---------CCHHHHHHHHHHHHhc---cCCCEEEEeC-----CC-CCCCHHHHHHHH
Confidence 7788899999998776533311 1235677777777663 4566666662 22 233566667777
Q ss_pred HHHhhcCCCceeEeee
Q psy13372 173 RELRAHGISNVQLQFD 188 (273)
Q Consensus 173 ~~~~~~~~~~~g~~~D 188 (273)
+++ |++--.=|
T Consensus 153 ---~~~--~nvvgiKd 163 (296)
T TIGR03249 153 ---DRC--PNLVGFKD 163 (296)
T ss_pred ---hhC--CCEEEEEe
Confidence 554 66444444
No 426
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=62.01 E-value=84 Score=26.60 Aligned_cols=95 Identities=6% Similarity=-0.021 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCC-CCCCCCCCCCcch
Q psy13372 47 VTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKT-ESSRTQPIASEDP 125 (273)
Q Consensus 47 ~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~~~~~~~~~~~ 125 (273)
.+.++..+.+++.|++-..+..... ........ .....+...-+.+...|.+...+.++.. ......+ .+..
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~~~-~~~~~~~~----~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~--d~~~ 88 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVDES-DERLARLD----WSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSR--DPAT 88 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecCCc-cccccccc----CCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCC--CHHH
Confidence 6788889999999999887764311 00000000 0012345566677788888766543321 1110000 2345
Q ss_pred HHHHHHHHHHHHHHHhhCCcEEE
Q psy13372 126 YTTLKENLIYACAELERHSLTAL 148 (273)
Q Consensus 126 ~~~~~~~l~~l~~~a~~~gv~i~ 148 (273)
.+..++.++++++.|+..|+...
T Consensus 89 r~~~~~~~~~~i~~a~~lG~~~v 111 (284)
T PRK13210 89 RERALEIMKKAIRLAQDLGIRTI 111 (284)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEE
Confidence 67889999999999999998754
No 427
>PRK05434 phosphoglyceromutase; Provisional
Probab=61.95 E-value=96 Score=29.30 Aligned_cols=81 Identities=10% Similarity=-0.001 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHH
Q psy13372 51 QLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLK 130 (273)
Q Consensus 51 ~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~ 130 (273)
++.+..++.|=.+.-++...++.. ...++.+...+++|++-|++.|.+|.-..+.+. + -+-..
T Consensus 100 ~~~~~~~~~~~~lHl~GL~SdggV---------Hsh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~-----~---p~s~~ 162 (507)
T PRK05434 100 DAIDKAKKNGGALHLMGLLSDGGV---------HSHIDHLFALLELAKEEGVKKVYVHAFLDGRDT-----P---PKSAL 162 (507)
T ss_pred HHHHHHHhcCCeEEEEEeccCCCc---------ccHHHHHHHHHHHHHHcCCCEEEEEEecCCCCC-----C---chhHH
Confidence 344445556655554443322221 124789999999999999999988864333321 1 12344
Q ss_pred HHHHHHHHHHhhCCc-EEE
Q psy13372 131 ENLIYACAELERHSL-TAL 148 (273)
Q Consensus 131 ~~l~~l~~~a~~~gv-~i~ 148 (273)
+.++++.+..++.|+ +|+
T Consensus 163 ~~i~~l~~~~~~~~~~~ia 181 (507)
T PRK05434 163 GYLEELEAKLAELGVGRIA 181 (507)
T ss_pred HHHHHHHHHHHHhCCeeEE
Confidence 556666666666665 444
No 428
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=61.88 E-value=19 Score=31.29 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCCCeEEecCCCC-CC-------CHHHHHHHHHHcCCeeEE
Q psy13372 23 YLDKYRVAAELGFRYIESWFPPV-GV-------TLEQLVAAQTRHGLKQVL 65 (273)
Q Consensus 23 ~~~~l~~~~~~G~~~vEl~~~~~-~~-------~~~~~~~~l~~~gL~i~~ 65 (273)
....++.+++.|||||++.+.+. .. -+++++..+++.|+.++.
T Consensus 92 i~~iv~~l~~~~~DGidiDwE~~~~~d~~~~~~fl~~lr~~l~~~~~~lsv 142 (313)
T cd02874 92 INNILALAKKYGYDGVNIDFENVPPEDREAYTQFLRELSDRLHPAGYTLST 142 (313)
T ss_pred HHHHHHHHHHhCCCcEEEecccCCHHHHHHHHHHHHHHHHHhhhcCcEEEE
Confidence 46667888999999999997642 01 147888888888876654
No 429
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=61.85 E-value=1.2e+02 Score=27.36 Aligned_cols=117 Identities=11% Similarity=0.075 Sum_probs=63.5
Q ss_pred HHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHH-HHHcCCCeEEecCCCCCCCCC------------CCCCCc
Q psy13372 57 TRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQY-ACALNIPAIHIMSGKTESSRT------------QPIASE 123 (273)
Q Consensus 57 ~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-a~~lG~~~i~~~~G~~~~~~~------------~~~~~~ 123 (273)
+.+|...+++..-. .+|+..+..-+.+.++++. ++..+.+.|...+|....+.. .|.
T Consensus 150 ~~~~aD~Ialr~~S-------~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpL--- 219 (389)
T TIGR00381 150 KEFGADMVTIHLIS-------TDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCL--- 219 (389)
T ss_pred HHhCCCEEEEEecC-------CCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcE---
Confidence 67788877765421 2333222223333334433 356778887776665432210 011
Q ss_pred chHHHHHH-HHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCCCceeEeeecccccc
Q psy13372 124 DPYTTLKE-NLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQR 194 (273)
Q Consensus 124 ~~~~~~~~-~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~ 194 (273)
......+ .+++++++|++||..+....- .. ++-..++.+.+ .+.+-|.=.+.+|.+-...
T Consensus 220 -L~SAt~e~Ny~~ia~lAk~yg~~Vvv~s~------~D-in~ak~Ln~kL---~~~Gv~~eDIVlDP~t~al 280 (389)
T TIGR00381 220 -LASANLDLDYEKIANAAKKYGHVVLSWTI------MD-INMQKTLNRYL---LKRGLMPRDIVMDPTTCAL 280 (389)
T ss_pred -EEecCchhhHHHHHHHHHHhCCeEEEEcC------Cc-HHHHHHHHHHH---HHcCCCHHHEEEcCCCccc
Confidence 0111122 688899999999998887751 11 23333444444 6666564468899877543
No 430
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=61.72 E-value=60 Score=29.12 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCH
Q psy13372 86 FRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSF 165 (273)
Q Consensus 86 ~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~ 165 (273)
..+.+.+.++.+..+|+..|.+..|.+ -- . ..+.++++.+++.|+.+.+-+ .+.++ +.
T Consensus 47 ~~e~~~~ii~~~~~~g~~~v~~~GGEP-ll------~--------~~~~~il~~~~~~g~~~~i~T------NG~ll-~~ 104 (378)
T PRK05301 47 STEEWIRVLREARALGALQLHFSGGEP-LL------R--------KDLEELVAHARELGLYTNLIT------SGVGL-TE 104 (378)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEECCcc-CC------c--------hhHHHHHHHHHHcCCcEEEEC------CCccC-CH
Confidence 356778889999999998887753322 11 1 124466777788898877665 12222 33
Q ss_pred HHHHHHHHHHhhcCCCceeEeeecc
Q psy13372 166 RVAERLIRELRAHGISNVQLQFDFF 190 (273)
Q Consensus 166 ~~~~~li~~~~~~~~~~~g~~~D~~ 190 (273)
+.+. .+ ...+-..+.+.+|..
T Consensus 105 ~~~~-~L---~~~g~~~v~iSldg~ 125 (378)
T PRK05301 105 ARLA-AL---KDAGLDHIQLSFQDS 125 (378)
T ss_pred HHHH-HH---HHcCCCEEEEEecCC
Confidence 3333 33 455445688999974
No 431
>PLN00197 beta-amylase; Provisional
Probab=61.56 E-value=16 Score=34.41 Aligned_cols=46 Identities=17% Similarity=0.016 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCC-----------CCCHHHHHHHHHHcCCeeEEEe
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPV-----------GVTLEQLVAAQTRHGLKQVLIN 67 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~-----------~~~~~~~~~~l~~~gL~i~~~~ 67 (273)
.+...|+.++.+|.+||++..+++ -...+++.++++++||++..+-
T Consensus 128 ~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKlq~Vm 184 (573)
T PLN00197 128 AMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRHGLKVQAVM 184 (573)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEE
Confidence 588899999999999999885432 1225899999999999997543
No 432
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=61.55 E-value=1e+02 Score=26.17 Aligned_cols=107 Identities=8% Similarity=0.014 Sum_probs=61.4
Q ss_pred HcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCC
Q psy13372 32 ELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGK 111 (273)
Q Consensus 32 ~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~ 111 (273)
++||--.+-..+.+ .+..+..+.+++.|.+-+.+........ .... . ...+.+...-+.+++.|.+...+..+.
T Consensus 7 ~~~~~~~~~~~~~~-~~~~e~~~~~~~~G~~~iEl~~~~~~~~-~~~~-~---~~~~~~~~l~~~l~~~gl~i~~~~~~~ 80 (283)
T PRK13209 7 QIPLGIYEKALPAG-ECWLEKLAIAKTAGFDFVEMSVDESDER-LARL-D---WSREQRLALVNALVETGFRVNSMCLSA 80 (283)
T ss_pred cccceeecccCCCC-CCHHHHHHHHHHcCCCeEEEecCccccc-hhcc-C---CCHHHHHHHHHHHHHcCCceeEEeccc
Confidence 33444444333333 6778888889999998887754211000 0000 0 011234455666677888876553322
Q ss_pred C---CCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEE
Q psy13372 112 T---ESSRTQPIASEDPYTTLKENLIYACAELERHSLTAL 148 (273)
Q Consensus 112 ~---~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~ 148 (273)
. +.... .+...+..++.+++.++.|++.|+...
T Consensus 81 ~~~~~~~~~----~~~~r~~~~~~~~~~i~~a~~lG~~~i 116 (283)
T PRK13209 81 HRRFPLGSE----DDAVRAQALEIMRKAIQLAQDLGIRVI 116 (283)
T ss_pred ccccCCCCC----CHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 1 11110 344567788999999999999998744
No 433
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=61.53 E-value=25 Score=29.82 Aligned_cols=37 Identities=11% Similarity=0.138 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCCCeEEecCCCCCCC-------HHHHHHHHHHcC
Q psy13372 24 LDKYRVAAELGFRYIESWFPPVGVT-------LEQLVAAQTRHG 60 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~~~~-------~~~~~~~l~~~g 60 (273)
...++.++++|||||+|.+.+...+ ++++++.+++.+
T Consensus 103 ~S~~~~l~~~~fDGiDiDwE~~~~d~~~f~~ll~~l~~~l~~~~ 146 (253)
T cd06544 103 SSLTSIIQTYNLDGIDIDYEHFPADPDTFVECIGQLITELKNNG 146 (253)
T ss_pred HHHHHHHHHhCCCceeeecccCCcCHHHHHHHHHHHHHHhhhcC
Confidence 4457889999999999997643112 478888888887
No 434
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=61.39 E-value=1.3e+02 Score=30.52 Aligned_cols=92 Identities=13% Similarity=0.150 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC-CCeEEecCCCCCCCCCCCCCCcchHHH
Q psy13372 50 EQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN-IPAIHIMSGKTESSRTQPIASEDPYTT 128 (273)
Q Consensus 50 ~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG-~~~i~~~~G~~~~~~~~~~~~~~~~~~ 128 (273)
.++.+.+++.|+.+..++++.+.+ . .+++.. .+.++...+++..++ .+++-+.. +++...... ..+-.++.
T Consensus 650 ~~~~~~~~~~~l~l~GlH~H~GS~--~-~~~~~~---~~~~~~~~~l~~~~~~~~~iDiGG-Gf~v~y~~~-~~~~~~~~ 721 (861)
T PRK08961 650 DEFVDLAKTLGITVVGLHAHLGSG--I-ETGEHW---RRMADELASFARRFPDVRTIDLGG-GLGIPESAG-DEPFDLDA 721 (861)
T ss_pred HHHHHHHHhCCCCEEEEEEecCCC--C-CCHHHH---HHHHHHHHHHHHhccCCcEEEecC-ccCcCCCCC-CCCCCHHH
Confidence 455666778899999988875421 1 234333 334445555666654 45666643 443321100 01224566
Q ss_pred HHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 129 LKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 129 ~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
+.+.+.++.+. ..++++.+||
T Consensus 722 ~~~~i~~~~~~--~~~~~li~EP 742 (861)
T PRK08961 722 LDAGLAEVKAQ--HPGYQLWIEP 742 (861)
T ss_pred HHHHHHHHHhh--cCCCEEEEcc
Confidence 77777665442 2478999998
No 435
>PRK07534 methionine synthase I; Validated
Probab=61.39 E-value=1.2e+02 Score=26.95 Aligned_cols=144 Identities=10% Similarity=0.022 Sum_probs=76.1
Q ss_pred HHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC----CCeEEec-CCCCCCCCCCCCCCcc
Q psy13372 50 EQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN----IPAIHIM-SGKTESSRTQPIASED 124 (273)
Q Consensus 50 ~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG----~~~i~~~-~G~~~~~~~~~~~~~~ 124 (273)
.++-...=++|..+...+++......+. .....++..+..++++++|++.- .+..+.. .|..+.... |. .+.
T Consensus 48 ~~vH~~Yl~AGAdiI~TnTy~as~~~l~-~~~~~~~~~~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~l~-~~-~~~ 124 (336)
T PRK07534 48 TALHQGFVDAGSDIILTNSFGGTAARLK-LHDAQDRVHELNRAAAEIAREVADKAGRKVIVAGSVGPTGEIME-PM-GAL 124 (336)
T ss_pred HHHHHHHHHhcCCEEEecCcccCHHHHH-hcCcHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCCCccccC-CC-CCC
Confidence 3344334568999887666532100010 01123445667777777776652 2222221 121111110 10 122
Q ss_pred hHHHHHHHHHHHHHHHhhCCcE-EEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCCCc-eeEeeecccccccCCChHHH
Q psy13372 125 PYTTLKENLIYACAELERHSLT-ALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGISN-VQLQFDFFNAQRICGDLTHT 202 (273)
Q Consensus 125 ~~~~~~~~l~~l~~~a~~~gv~-i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~g~~~D~~h~~~~~~~~~~~ 202 (273)
..+...+.+++.++...+.||. |++|+++ +..++..+++-+++.+.|. +.++++-..-...|.++.+.
T Consensus 125 ~~~e~~~~~~~qi~~l~~~gvD~l~~ET~p----------~l~E~~a~~~~~~~~~~Pv~vSft~~~~g~l~~G~~~~~~ 194 (336)
T PRK07534 125 THALAVEAFHEQAEGLKAGGADVLWVETIS----------APEEIRAAAEAAKLAGMPWCGTMSFDTAGRTMMGLTPADL 194 (336)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeccC----------CHHHHHHHHHHHHHcCCeEEEEEEECCCCeeCCCCcHHHH
Confidence 3445566666666666778886 8899854 4556655553346666564 66666655444667777766
Q ss_pred HHhc
Q psy13372 203 FGAC 206 (273)
Q Consensus 203 i~~~ 206 (273)
++.+
T Consensus 195 ~~~~ 198 (336)
T PRK07534 195 ADLV 198 (336)
T ss_pred HHHH
Confidence 6665
No 436
>PRK07094 biotin synthase; Provisional
Probab=61.20 E-value=1.1e+02 Score=26.62 Aligned_cols=21 Identities=29% Similarity=0.178 Sum_probs=13.3
Q ss_pred CHHHHHH---HHHHcCCCeEEecC
Q psy13372 22 NYLDKYR---VAAELGFRYIESWF 42 (273)
Q Consensus 22 ~~~~~l~---~~~~~G~~~vEl~~ 42 (273)
+.++.++ .+.+.|++.|-+..
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l~g 94 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVLQS 94 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEec
Confidence 5555544 45567888887763
No 437
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=60.97 E-value=1.2e+02 Score=26.70 Aligned_cols=54 Identities=9% Similarity=0.063 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEE-ccC
Q psy13372 86 FRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALI-EPV 152 (273)
Q Consensus 86 ~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~l-E~~ 152 (273)
..+.+.+.|+.+.+.|.+.+.+..-..... . .+.+.++++++++.|+.+.+ |-+
T Consensus 137 ~~~~vl~~i~~l~~~G~~~v~in~vv~~g~------n-------~~ei~~l~~~~~~~gv~~~~ie~m 191 (334)
T TIGR02666 137 RLEQVLAGIDAALAAGLEPVKLNTVVMRGV------N-------DDEIVDLAEFAKERGVTLRFIELM 191 (334)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEeCCC------C-------HHHHHHHHHHHHhcCCeEEEEecc
Confidence 456777888888888987332211001110 1 13466777888899987554 544
No 438
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=60.91 E-value=27 Score=29.15 Aligned_cols=63 Identities=17% Similarity=0.153 Sum_probs=40.6
Q ss_pred CCCCcccccc----cccccccc-cccCHHHHHHHHHHcCCCeEEecCCCC---------------CCCHHHHHHHHHHcC
Q psy13372 1 MAAPSFKLAA----NLTLLFND-LAANYLDKYRVAAELGFRYIESWFPPV---------------GVTLEQLVAAQTRHG 60 (273)
Q Consensus 1 ~~~~~~k~~~----~~~~~~~~-~~~~~~~~l~~~~~~G~~~vEl~~~~~---------------~~~~~~~~~~l~~~g 60 (273)
|+.|+...-+ |+.....+ .+.+-.+.+..+.+.|+++||+..+.+ ....+.+.+.++++.
T Consensus 4 m~~PLs~YfI~SSHNTYL~g~Ql~~ess~eay~~AL~~GcR~vElDvwdg~dgePvV~HG~tlts~i~f~dv~~~I~~~a 83 (229)
T cd08592 4 MNNPLSHYWIASSHNTYLTGDQLSSESSLEAYARCLRMGCRCIELDCWDGPDGMPIIYHGHTLTSKIKFMDVLKTIKEHA 83 (229)
T ss_pred ccchhHhheeeccccccccCCccCCccCHHHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcCCCCcCHHHHHHHHHHHh
Confidence 6677765533 34333333 234566788889999999999995321 134577777788876
Q ss_pred Cee
Q psy13372 61 LKQ 63 (273)
Q Consensus 61 L~i 63 (273)
...
T Consensus 84 F~~ 86 (229)
T cd08592 84 FVT 86 (229)
T ss_pred ccC
Confidence 543
No 439
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=60.90 E-value=97 Score=28.19 Aligned_cols=136 Identities=13% Similarity=0.122 Sum_probs=70.3
Q ss_pred HHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcC--CeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHc
Q psy13372 23 YLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHG--LKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACAL 100 (273)
Q Consensus 23 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~g--L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l 100 (273)
+-+.++.=++.|.|++.++..- .++..+.+++.+ +.|+|=+...-..|...... .+-..+++.+.++++++.
T Consensus 142 ~~~~ie~qa~dGVDfmTiH~Gi----~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~--ENPlye~fD~lLeI~~~y 215 (423)
T TIGR00190 142 MFRAIEKQAKDGVDFMTIHAGV----LLEYVERLKRSGRITGIVSRGGAILAAWMLHHHK--ENPLYKNFDYILEIAKEY 215 (423)
T ss_pred HHHHHHHHHHhCCCEEEEccch----hHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCC--cCchHHHHHHHHHHHHHh
Confidence 3444444466678877777432 233444455533 33443221110111111111 122457888899999987
Q ss_pred CCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHH
Q psy13372 101 NIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLI 172 (273)
Q Consensus 101 G~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li 172 (273)
.+. +.+.-|.++....+. +....++.+ ..|.+|++.|.++||.+.+|-=++ ..++-.+.-+++.
T Consensus 216 DVt-lSLGDglRPG~i~DA-~D~aQi~El-~~lgeL~~rA~e~gVQvMVEGPGH-----vPl~~I~~nv~lq 279 (423)
T TIGR00190 216 DVT-LSLGDGLRPGCIADA-TDRAQISEL-ITLGELVERAREADVQCMVEGPGH-----VPLDQIEANVRLQ 279 (423)
T ss_pred Cee-eeccCCcCCCccccC-CcHHHHHHH-HHHHHHHHHHHHcCCeEEEECCCC-----CcHHHHHHHHHHH
Confidence 753 333333333221100 022233333 358999999999999999996222 1344445556666
No 440
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=60.80 E-value=1.1e+02 Score=26.16 Aligned_cols=168 Identities=14% Similarity=0.136 Sum_probs=84.4
Q ss_pred cCHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHc
Q psy13372 21 ANYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACAL 100 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l 100 (273)
+...+.++.+++.+.. ..+..... ...+.+..++ +.|+....+..+.............+++.++.+.++++.|+..
T Consensus 48 ~~~~~~~~~l~~~~~~-~~v~~~~r-~~~~di~~a~-~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~ 124 (262)
T cd07948 48 PQSRADCEAIAKLGLK-AKILTHIR-CHMDDARIAV-ETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSK 124 (262)
T ss_pred HHHHHHHHHHHhCCCC-CcEEEEec-CCHHHHHHHH-HcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC
Confidence 3556677777777653 22211111 3344555544 4688876654432100000011234567788999999999999
Q ss_pred CCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcE-EEEccCCCCCCCCcccCCHHHHHHHHHHHhhcC
Q psy13372 101 NIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLT-ALIEPVNQHSVPGYYLSSFRVAERLIRELRAHG 179 (273)
Q Consensus 101 G~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 179 (273)
|.+........... + .+.+.++++.+.+.|+. ++|--+ .-.-+|.++.++++.+++.
T Consensus 125 G~~v~~~~eda~r~-------~-------~~~l~~~~~~~~~~g~~~i~l~Dt-------~G~~~P~~v~~~~~~~~~~- 182 (262)
T cd07948 125 GIEVRFSSEDSFRS-------D-------LVDLLRVYRAVDKLGVNRVGIADT-------VGIATPRQVYELVRTLRGV- 182 (262)
T ss_pred CCeEEEEEEeeCCC-------C-------HHHHHHHHHHHHHcCCCEEEECCc-------CCCCCHHHHHHHHHHHHHh-
Confidence 96533222111111 1 22344556666666654 554432 2356788888888444432
Q ss_pred CCceeEeeecccccc-cCCChHHHHHhcCCcceeEEecc
Q psy13372 180 ISNVQLQFDFFNAQR-ICGDLTHTFGACRDLIGHVQIAQ 217 (273)
Q Consensus 180 ~~~~g~~~D~~h~~~-~~~~~~~~i~~~~~~i~~vHi~d 217 (273)
+++-+. .|.+. .|..+...+..+..-+..++.+-
T Consensus 183 ---~~~~i~-~H~Hn~~Gla~an~~~a~~aG~~~vd~s~ 217 (262)
T cd07948 183 ---VSCDIE-FHGHNDTGCAIANAYAALEAGATHIDTTV 217 (262)
T ss_pred ---cCCeEE-EEECCCCChHHHHHHHHHHhCCCEEEEec
Confidence 233332 34432 34445555555444444555553
No 441
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=60.51 E-value=38 Score=27.28 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHcCCCeEEecCCCC
Q psy13372 87 RASLEKTIQYACALNIPAIHIMSGKT 112 (273)
Q Consensus 87 ~~~~~~~i~~a~~lG~~~i~~~~G~~ 112 (273)
.+.....++++.++|++.|++..|..
T Consensus 33 ~e~a~~vld~a~~~gv~~iitLgG~~ 58 (188)
T TIGR00162 33 YELVNAIIDVAKKYGARMIYTLGGYG 58 (188)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCc
Confidence 45788899999999999998876643
No 442
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=60.43 E-value=33 Score=29.18 Aligned_cols=64 Identities=17% Similarity=0.112 Sum_probs=43.0
Q ss_pred CCCCcccccccc----cccccc-cccCHHHHHHHHHHcCCCeEEecCCCC---------------CCCHHHHHHHHHHcC
Q psy13372 1 MAAPSFKLAANL----TLLFND-LAANYLDKYRVAAELGFRYIESWFPPV---------------GVTLEQLVAAQTRHG 60 (273)
Q Consensus 1 ~~~~~~k~~~~~----~~~~~~-~~~~~~~~l~~~~~~G~~~vEl~~~~~---------------~~~~~~~~~~l~~~g 60 (273)
|+.|+..+-+|+ .....+ .+.+-.+....+...|+++||+..+.+ ....+.+.++++++.
T Consensus 4 m~~Pls~YfI~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wdg~~~eP~v~HG~t~t~~i~f~~v~~~I~~~a 83 (257)
T cd08593 4 MTQPLSHYFIASSHNTYLLEDQLKGPSSTEAYIRALKKGCRCVELDCWDGPDGEPIIYHGHTLTSKILFKDVIQAIREYA 83 (257)
T ss_pred CCcchhhheeecccCccccCCcccCCccHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCccccCcCHHHHHHHHHHHh
Confidence 677876664443 234444 245678889999999999999995421 134578888888887
Q ss_pred CeeE
Q psy13372 61 LKQV 64 (273)
Q Consensus 61 L~i~ 64 (273)
...+
T Consensus 84 F~~s 87 (257)
T cd08593 84 FKVS 87 (257)
T ss_pred ccCC
Confidence 6543
No 443
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=60.13 E-value=1e+02 Score=25.81 Aligned_cols=46 Identities=22% Similarity=0.179 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHcCCCeEEecC-CCCCCCHHHHHHHHHHcCCeeEEEecC
Q psy13372 22 NYLDKYRVAAELGFRYIESWF-PPVGVTLEQLVAAQTRHGLKQVLINTE 69 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~-~~~~~~~~~~~~~l~~~gL~i~~~~~~ 69 (273)
.++..++.++++|.++|-+.- +. +....+.+.++++|+....+..|
T Consensus 92 G~~~fi~~~~~aG~~giiipDl~~--ee~~~~~~~~~~~g~~~i~~i~P 138 (242)
T cd04724 92 GLERFLRDAKEAGVDGLIIPDLPP--EEAEEFREAAKEYGLDLIFLVAP 138 (242)
T ss_pred CHHHHHHHHHHCCCcEEEECCCCH--HHHHHHHHHHHHcCCcEEEEeCC
Confidence 368899999999999998852 22 35678889999999998876543
No 444
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=59.95 E-value=1.1e+02 Score=26.28 Aligned_cols=80 Identities=13% Similarity=0.158 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCCC---CHHHHHHHHH-HcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVGV---TLEQLVAAQT-RHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYA 97 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~~---~~~~~~~~l~-~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 97 (273)
.+.+.++...+++-+.|.+.+..... ..-++.+.++ +.|+++..+-+-. +.+ ...++..+..+
T Consensus 17 ~~~~~~~~l~~~~p~fvsvT~~~~~~~~~~t~~~~~~l~~~~g~~~i~Hltcr----~~~---------~~~l~~~L~~~ 83 (281)
T TIGR00677 17 NLYERMDRMVASGPLFIDITWGAGGTTAELTLTIASRAQNVVGVETCMHLTCT----NMP---------IEMIDDALERA 83 (281)
T ss_pred HHHHHHHHHhhCCCCEEEeccCCCCcchhhHHHHHHHHHHhcCCCeeEEeccC----CCC---------HHHHHHHHHHH
Confidence 46677777888899999998643211 2233444454 7799988653311 111 23677788888
Q ss_pred HHcCCCeEEecCCCCCC
Q psy13372 98 CALNIPAIHIMSGKTES 114 (273)
Q Consensus 98 ~~lG~~~i~~~~G~~~~ 114 (273)
..+|++.|-+..|..+.
T Consensus 84 ~~~Gi~niLal~GD~p~ 100 (281)
T TIGR00677 84 YSNGIQNILALRGDPPH 100 (281)
T ss_pred HHCCCCEEEEECCCCCC
Confidence 99999999888887753
No 445
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=59.89 E-value=1.2e+02 Score=26.37 Aligned_cols=142 Identities=9% Similarity=0.021 Sum_probs=75.6
Q ss_pred cCHHHHHHHHHHcCCCeEEecCCC-C-CCC---HHHHHHHHHHcCCeeEE-EecCCccccCCCCCchhHHHHHHHHHHHH
Q psy13372 21 ANYLDKYRVAAELGFRYIESWFPP-V-GVT---LEQLVAAQTRHGLKQVL-INTEVDENFGYAAVKGKESEFRASLEKTI 94 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~~~-~-~~~---~~~~~~~l~~~gL~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (273)
.+++.+ ..+-++||+.|.+.... + +.. .+++.+.....|+.+-. ++.-.+...+.... ......-+.+.
T Consensus 88 ~~~e~i-~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~----~~~yT~peea~ 162 (286)
T PRK08610 88 SSFEKC-KEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVAD----GIIYADPKECQ 162 (286)
T ss_pred CCHHHH-HHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCc----ccccCCHHHHH
Confidence 455544 56778999999999752 1 122 47888888899988874 43221111110000 01122334566
Q ss_pred HHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHH
Q psy13372 95 QYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRE 174 (273)
Q Consensus 95 ~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~ 174 (273)
++.++-|+..+-+-.|..=.....+ +.-.+ +.|+++ .+..++.+.|+--+ ..+.++..+.+
T Consensus 163 ~Fv~~TgvD~LAvaiGt~HG~Y~~~--p~Ld~----~~L~~I---~~~~~vPLVLHGgS--------G~~~e~~~~ai-- 223 (286)
T PRK08610 163 ELVEKTGIDALAPALGSVHGPYKGE--PKLGF----KEMEEI---GLSTGLPLVLHGGT--------GIPTKDIQKAI-- 223 (286)
T ss_pred HHHHHHCCCEEEeeccccccccCCC--CCCCH----HHHHHH---HHHHCCCEEEeCCC--------CCCHHHHHHHH--
Confidence 6667789998877666541111000 22222 334443 34568999988522 22344444444
Q ss_pred HhhcCCCceeEeeecc
Q psy13372 175 LRAHGISNVQLQFDFF 190 (273)
Q Consensus 175 ~~~~~~~~~g~~~D~~ 190 (273)
+ . --.+++++|-
T Consensus 224 -~-~--GI~KiNi~T~ 235 (286)
T PRK08610 224 -P-F--GTAKINVNTE 235 (286)
T ss_pred -H-C--CCeEEEeccH
Confidence 2 2 3367777763
No 446
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=59.89 E-value=58 Score=24.86 Aligned_cols=60 Identities=15% Similarity=0.028 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHcCCCeEEecCCCC-CCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 88 ASLEKTIQYACALNIPAIHIMSGKT-ESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 88 ~~~~~~i~~a~~lG~~~i~~~~G~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
+-...+...|.++|++.|+++|..- +.+ -..-+..++.|+++-+..+..|+.+.==|.++
T Consensus 58 ~av~eI~~~a~kv~~~~ivlyPyAHLSs~-------La~P~~A~~iL~~le~~L~~~g~eV~raPFGw 118 (138)
T PF08915_consen 58 KAVEEIKWVAKKVKAKRIVLYPYAHLSSS-------LASPDVAVEILKKLEERLKSRGFEVYRAPFGW 118 (138)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEE-GGGSSS-------B--HHHHHHHHHHHHHHHHHTT-EEEE--TTE
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccCC-------cCChHHHHHHHHHHHHHHHhCCCeEEEeCCcc
Confidence 3455677889999999999987543 222 23345677888888888888998887666543
No 447
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=59.87 E-value=1.2e+02 Score=26.38 Aligned_cols=144 Identities=12% Similarity=0.066 Sum_probs=76.3
Q ss_pred cCHHHHHHHHHHcCCCeEEecCCC-C-CCC---HHHHHHHHHHcCCeeEE-EecCCccccCCCCCchhHHHHHHHHHHHH
Q psy13372 21 ANYLDKYRVAAELGFRYIESWFPP-V-GVT---LEQLVAAQTRHGLKQVL-INTEVDENFGYAAVKGKESEFRASLEKTI 94 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~~~-~-~~~---~~~~~~~l~~~gL~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (273)
.++ +.+..+-+.||+.|.+.... + +.. .+++.+.....|+.+-. ++.-.+.+.+...... +.....-..+.
T Consensus 88 ~~~-e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~--~~~~T~peea~ 164 (288)
T TIGR00167 88 ASE-EDCAQAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADE--SALYTDPEEAK 164 (288)
T ss_pred CCH-HHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccc--cccCCCHHHHH
Confidence 355 55666668999999999752 1 122 46778888889998874 4322111111000000 11122334677
Q ss_pred HHHHHcCCCeEEecCCCCCCCCCCCCCCc-chHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHH
Q psy13372 95 QYACALNIPAIHIMSGKTESSRTQPIASE-DPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIR 173 (273)
Q Consensus 95 ~~a~~lG~~~i~~~~G~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~ 173 (273)
++..+.|+..+-+-.|..=.....+ +. -.++ .|+ ++.+..++.++++--+ ..+.++..+.+
T Consensus 165 ~Fv~~TgvD~LAvaiGt~HG~y~~~--p~~Ld~~----~L~---~I~~~v~vPLVlHGgS--------G~~~e~~~~ai- 226 (288)
T TIGR00167 165 EFVKLTGVDSLAAAIGNVHGVYKGE--PKGLDFE----RLE---EIQKYVNLPLVLHGGS--------GIPDEEIKKAI- 226 (288)
T ss_pred HHHhccCCcEEeeccCccccccCCC--CCccCHH----HHH---HHHHHhCCCEEEeCCC--------CCCHHHHHHHH-
Confidence 7778889999887666541111000 11 2222 333 3344448999988522 22344545555
Q ss_pred HHhhcCCCceeEeeecc
Q psy13372 174 ELRAHGISNVQLQFDFF 190 (273)
Q Consensus 174 ~~~~~~~~~~g~~~D~~ 190 (273)
+ . --.+++++|.
T Consensus 227 --~-~--Gi~KiNi~T~ 238 (288)
T TIGR00167 227 --S-L--GVVKVNIDTE 238 (288)
T ss_pred --H-c--CCeEEEcChH
Confidence 2 2 3366777763
No 448
>PRK06687 chlorohydrolase; Validated
Probab=59.81 E-value=1.4e+02 Score=27.16 Aligned_cols=107 Identities=9% Similarity=0.076 Sum_probs=57.9
Q ss_pred HHHHHHcCCCeEEecC-CCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCCCeE
Q psy13372 27 YRVAAELGFRYIESWF-PPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIPAI 105 (273)
Q Consensus 27 l~~~~~~G~~~vEl~~-~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i 105 (273)
+..+.+.|..+|--.. +.. .....+.+.+++.|+.........+ . .....+..++..++.++.....+...+
T Consensus 109 ~~e~l~~GvTTv~d~~~~~~-~~~~~~~~a~~~~Gir~~~~~~~~~----~--~~~~~~~~~~~~~~~i~~~~~~~~~~i 181 (419)
T PRK06687 109 LTEMLQSGTTTFNDMYNPNG-VDIQQIYQVVKTSKMRCYFSPTLFS----S--ETETTAETISRTRSIIDEILKYKNPNF 181 (419)
T ss_pred HHHHHhcCcceeehhhcccc-ccHHHHHHHHHHhCCceEecccccc----C--CcccHHHHHHHHHHHHHHHhccCCCce
Confidence 3445777888886432 222 3456677778888987753211111 1 111223445555556554433344445
Q ss_pred EecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 106 HIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 106 ~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
.+..+..... ...-+.++++.++|+++|+.+.++.
T Consensus 182 ~~~~~~~~~~-----------~~s~e~l~~~~~~A~~~g~~i~~H~ 216 (419)
T PRK06687 182 KVMVAPHSPY-----------SCSRDLLEASLEMAKELNIPLHVHV 216 (419)
T ss_pred EEEEeCCCCC-----------CCCHHHHHHHHHHHHHcCCcEEEEe
Confidence 4433321111 1112357888899999999999885
No 449
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=59.81 E-value=20 Score=31.90 Aligned_cols=116 Identities=9% Similarity=-0.090 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHcCCCeEEec----CCCCCCCCC-CCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCC-CCccc
Q psy13372 89 SLEKTIQYACALNIPAIHIM----SGKTESSRT-QPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSV-PGYYL 162 (273)
Q Consensus 89 ~~~~~i~~a~~lG~~~i~~~----~G~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~-~~~~~ 162 (273)
...+++++|+..|++++++. -|.--.+.. .+... ....--.+-++++++.++++|+++++--.....+ +....
T Consensus 92 D~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v-~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~dw~~~~~~~ 170 (346)
T PF01120_consen 92 DADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNV-VNSGPKRDIVGELADACRKYGLKFGLYYSPWDWHHPDYPP 170 (346)
T ss_dssp -HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBG-GGGGGTS-HHHHHHHHHHHTT-EEEEEEESSSCCCTTTTS
T ss_pred CHHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccc-cCCCCCCCHHHHHHHHHHHcCCeEEEEecchHhcCcccCC
Confidence 45679999999999998873 343211110 00000 0011123678899999999999988864322222 21111
Q ss_pred CC----------------------HHHHHHHHHHHhhcCCCceeEeeecccccccC----CChHHHHHhcCCcc
Q psy13372 163 SS----------------------FRVAERLIRELRAHGISNVQLQFDFFNAQRIC----GDLTHTFGACRDLI 210 (273)
Q Consensus 163 ~~----------------------~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~----~~~~~~i~~~~~~i 210 (273)
.. ..++.+|+ ... +--.+-+|.+...... ..+.+.++.+.+.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~---~~Y--~~d~lWfDg~~~~~~~~~~~~~~~~~i~~~qp~~ 239 (346)
T PF01120_consen 171 DEEGDENGPADGPGNWQRYYNEYWLAQLRELL---TRY--KPDILWFDGGWPDPDEDWDSAELYNWIRKLQPDV 239 (346)
T ss_dssp SCHCHHCC--HCCHHHHHHHHHHHHHHHHHHH---HCS--TESEEEEESTTSCCCTHHHHHHHHHHHHHHSTTS
T ss_pred CccCCcccccccchhhHhHhhhhhHHHHHHHH---hCC--CcceEEecCCCCccccccCHHHHHHHHHHhCCeE
Confidence 11 12333344 666 3358889987653111 24566677777643
No 450
>PRK09206 pyruvate kinase; Provisional
Probab=59.69 E-value=1.4e+02 Score=28.00 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=29.8
Q ss_pred HHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCC
Q psy13372 26 KYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGL 61 (273)
Q Consensus 26 ~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL 61 (273)
-++++.+.|+|.|-++|-....++.++++.+++.|.
T Consensus 177 di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~~~ 212 (470)
T PRK09206 177 DLIFGCEQGVDFVAASFIRKRSDVLEIREHLKAHGG 212 (470)
T ss_pred HHHHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHcCC
Confidence 378999999999999987554678888998888763
No 451
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=59.53 E-value=76 Score=24.09 Aligned_cols=107 Identities=9% Similarity=0.070 Sum_probs=64.8
Q ss_pred HHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCCCeEE
Q psy13372 27 YRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIPAIH 106 (273)
Q Consensus 27 l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~ 106 (273)
...++..||+-|.+-.. .+++++.+...+++-.+..++...+ . +...+++.++..++.|.+.+.
T Consensus 22 ~~~l~~~GfeVi~LG~~---v~~e~~v~aa~~~~adiVglS~l~~----~---------~~~~~~~~~~~l~~~gl~~~~ 85 (134)
T TIGR01501 22 DHAFTNAGFNVVNLGVL---SPQEEFIKAAIETKADAILVSSLYG----H---------GEIDCKGLRQKCDEAGLEGIL 85 (134)
T ss_pred HHHHHHCCCEEEECCCC---CCHHHHHHHHHHcCCCEEEEecccc----c---------CHHHHHHHHHHHHHCCCCCCE
Confidence 44668889999888533 5788999999999998887754311 1 134566777777877775554
Q ss_pred ecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHH
Q psy13372 107 IMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLI 172 (273)
Q Consensus 107 ~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li 172 (273)
+..|+...- ++..++ ...+.+++.|+.-.+-| ..++++....+
T Consensus 86 vivGG~~vi------~~~d~~-------~~~~~l~~~Gv~~vF~p----------gt~~~~iv~~l 128 (134)
T TIGR01501 86 LYVGGNLVV------GKQDFP-------DVEKRFKEMGFDRVFAP----------GTPPEVVIADL 128 (134)
T ss_pred EEecCCcCc------ChhhhH-------HHHHHHHHcCCCEEECc----------CCCHHHHHHHH
Confidence 544442111 111122 22344566887766665 23456666665
No 452
>smart00642 Aamy Alpha-amylase domain.
Probab=59.53 E-value=36 Score=26.78 Aligned_cols=44 Identities=23% Similarity=0.186 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHcCCCeEEecCCC------------C-------------CCCHHHHHHHHHHcCCeeEE
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPP------------V-------------GVTLEQLVAAQTRHGLKQVL 65 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~------------~-------------~~~~~~~~~~l~~~gL~i~~ 65 (273)
.+.+.+..++++||++|.+.-.+ + ..+.+++.+.++++|++|..
T Consensus 20 gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vil 88 (166)
T smart00642 20 GIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVIL 88 (166)
T ss_pred HHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 45667788999999999987321 0 01247777888899999985
No 453
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=59.45 E-value=1.3e+02 Score=26.74 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHcCCCeEEecC
Q psy13372 22 NYLDKYRVAAELGFRYIESWF 42 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~ 42 (273)
++.++.+.+.++|||+|||+.
T Consensus 142 ~f~~AA~ra~~aGfDgVeih~ 162 (343)
T cd04734 142 AFADAARRCQAGGLDGVELQA 162 (343)
T ss_pred HHHHHHHHHHHcCCCEEEEcc
Confidence 456666778889999999995
No 454
>PTZ00300 pyruvate kinase; Provisional
Probab=59.33 E-value=1.1e+02 Score=28.44 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCe
Q psy13372 24 LDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLK 62 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~ 62 (273)
.+.++++.+.|+|+|-+.+-....+++++++.+.+.|-.
T Consensus 150 ~~dI~~ald~gvd~I~~SfVrsaeDv~~vr~~l~~~~~~ 188 (454)
T PTZ00300 150 CADLQFGVEQGVDMIFASFIRSAEQVGEVRKALGAKGGD 188 (454)
T ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHhcCCC
Confidence 344788999999999998765446778888888776543
No 455
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=59.08 E-value=1.2e+02 Score=26.46 Aligned_cols=94 Identities=14% Similarity=0.076 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcE--EEEccCCCCCCCCcccCCHHHH
Q psy13372 91 EKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLT--ALIEPVNQHSVPGYYLSSFRVA 168 (273)
Q Consensus 91 ~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~--i~lE~~~~~~~~~~~~~~~~~~ 168 (273)
...++.....|-.....-|-..+..+. .. .+..-+.-.+.|++|++.|++.||. .+|.|-.. ....+.++.
T Consensus 18 ~~l~~f~~~~kmN~YiYAPKdDpyhr~-~W-re~Yp~~el~~l~~L~~~a~~~~V~Fv~aisPg~~-----~~~s~~~d~ 90 (306)
T PF07555_consen 18 LDLIRFLGRYKMNTYIYAPKDDPYHRS-KW-REPYPEEELAELKELADAAKANGVDFVYAISPGLD-----ICYSSEEDF 90 (306)
T ss_dssp HHHHHHHHHTT--EEEE--TT-TTTTT-TT-TS---HHHHHHHHHHHHHHHHTT-EEEEEEBGTTT-------TSHHHHH
T ss_pred HHHHHHHHHcCCceEEECCCCChHHHh-hh-cccCCHHHHHHHHHHHHHHHHcCCEEEEEECcccc-----cccCcHHHH
Confidence 457778888898888775543322211 00 1222334467899999999999987 56666321 112345555
Q ss_pred HHHHHHHhh---cCCCceeEeeeccc
Q psy13372 169 ERLIRELRA---HGISNVQLQFDFFN 191 (273)
Q Consensus 169 ~~li~~~~~---~~~~~~g~~~D~~h 191 (273)
..|+.-|++ ++-..+++++|=-.
T Consensus 91 ~~L~~K~~ql~~lGvr~FailfDDi~ 116 (306)
T PF07555_consen 91 EALKAKFDQLYDLGVRSFAILFDDID 116 (306)
T ss_dssp HHHHHHHHHHHCTT--EEEEE-TS-S
T ss_pred HHHHHHHHHHHhcCCCEEEEeecCCC
Confidence 666633333 45567999998633
No 456
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=59.05 E-value=1.3e+02 Score=26.79 Aligned_cols=146 Identities=14% Similarity=-0.024 Sum_probs=71.4
Q ss_pred HHHHHHHcCCCeEEecCC---CCCCC---HHHHHHHHHHcCCeeEE-EecCCccccCCCCCchhHHHHHHHHHHHHHHHH
Q psy13372 26 KYRVAAELGFRYIESWFP---PVGVT---LEQLVAAQTRHGLKQVL-INTEVDENFGYAAVKGKESEFRASLEKTIQYAC 98 (273)
Q Consensus 26 ~l~~~~~~G~~~vEl~~~---~~~~~---~~~~~~~l~~~gL~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~ 98 (273)
.++.+.+.||+.|.+... ++ .. .+++.+.....|+.+-. ++.-.+.+.+........+.....-..+.++++
T Consensus 115 ~~~~a~~~GftSVMiDgS~lp~e-ENI~~TkevVe~Ah~~gvsVEaElG~igg~ed~~~~~~~~~~~~yTdPeeA~~Fv~ 193 (345)
T cd00946 115 YFKQHGEPLFSSHMLDLSEEPLE-ENIEICKKYLERMAKINMWLEMEIGITGGEEDGVDNSGVDNAELYTQPEDVWYVYE 193 (345)
T ss_pred HHHHhccCCCceEEeeCCCCCHH-HHHHHHHHHHHHHHHcCCEEEEEecccCCcccCcccccccccccCCCHHHHHHHHH
Confidence 334445789999999875 22 22 47888888999998874 332211111110000000111223445666666
Q ss_pred Hc----CCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHH-Hhh------CCcEEEEccCCCCCCCCcccCCHHH
Q psy13372 99 AL----NIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAE-LER------HSLTALIEPVNQHSVPGYYLSSFRV 167 (273)
Q Consensus 99 ~l----G~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-a~~------~gv~i~lE~~~~~~~~~~~~~~~~~ 167 (273)
+. |+..+-+-.|..=.... +-.+.-.+ +.|+++.+. .+. .++.++++--+ ..+.++
T Consensus 194 ~t~~~tgvD~LAvaiGt~HG~Y~-~~~p~L~~----~~L~~I~~~i~~~~~~~~~~~ipLVLHGgS--------G~~~e~ 260 (345)
T cd00946 194 ALSKISPNFSIAAAFGNVHGVYK-PGNVKLQP----EILGEHQDYVREKLGLADDKPLYFVFHGGS--------GSTKEE 260 (345)
T ss_pred HhccCCCceeeeeeccccccCCC-CCCCccCH----HHHHHHHHHHHHhhccccCCCCCEEEeCCC--------CCCHHH
Confidence 65 55666554444311100 00022233 344555443 222 36788888421 334455
Q ss_pred HHHHHHHHhhcCCCceeEeeeccc
Q psy13372 168 AERLIRELRAHGISNVQLQFDFFN 191 (273)
Q Consensus 168 ~~~li~~~~~~~~~~~g~~~D~~h 191 (273)
..+.+ + . --.+++++|--
T Consensus 261 i~kai---~-~--GI~KiNi~T~l 278 (345)
T cd00946 261 IREAI---S-Y--GVVKMNIDTDT 278 (345)
T ss_pred HHHHH---H-c--CCeeEEeCcHH
Confidence 45555 2 2 34678888743
No 457
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=59.04 E-value=92 Score=25.91 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHcCCCeEEecC
Q psy13372 87 RASLEKTIQYACALNIPAIHIMS 109 (273)
Q Consensus 87 ~~~~~~~i~~a~~lG~~~i~~~~ 109 (273)
++.+...+++|++-|++.|.+|.
T Consensus 45 ~~Hl~al~~~a~~~gv~~V~vH~ 67 (223)
T PF06415_consen 45 IDHLFALIKLAKKQGVKKVYVHA 67 (223)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEE
Confidence 56777777777777777666654
No 458
>PLN02411 12-oxophytodienoate reductase
Probab=58.98 E-value=7.4 Score=35.32 Aligned_cols=21 Identities=29% Similarity=0.170 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHcCCCeEEecC
Q psy13372 22 NYLDKYRVAAELGFRYIESWF 42 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~ 42 (273)
.+.++.+.++++|||+|||+.
T Consensus 166 ~f~~AA~rA~~AGFDGVEIH~ 186 (391)
T PLN02411 166 HYRQAALNAIRAGFDGIEIHG 186 (391)
T ss_pred HHHHHHHHHHHcCCCEEEEcc
Confidence 455666788899999999994
No 459
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=58.62 E-value=1.4e+02 Score=26.82 Aligned_cols=116 Identities=13% Similarity=0.093 Sum_probs=63.0
Q ss_pred HHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCCC
Q psy13372 24 LDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIP 103 (273)
Q Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~ 103 (273)
+++++.+++.+|+-.-..++.. .++++. ...++|..+...... ...++..+..+..++.+.+.|+.|+.-|++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~rIAlvQ~~~~~-~~~~p~~~d~~~nl~ki~~~i~~Aa~~gad 105 (363)
T cd07587 33 ESALDLAKENDFELKGYKFEAA---PEQTRP---PRIVRVGLIQNKIVL-PTTAPIAEQREAIHDRIKKIIEAAAMAGVN 105 (363)
T ss_pred HHHHHHHHhcCceEEEeecCCC---hhhcCC---CceEEEEEEeccccc-cccCccccCHHHHHHHHHHHHHHHHHcCCC
Confidence 4667777777777665555422 111111 113555555432110 001123356778899999999999999999
Q ss_pred eEEecCCCC-CCCCCCCCCCcchHHHHH------HHHHHHHHHHhhCCcEEE
Q psy13372 104 AIHIMSGKT-ESSRTQPIASEDPYTTLK------ENLIYACAELERHSLTAL 148 (273)
Q Consensus 104 ~i~~~~G~~-~~~~~~~~~~~~~~~~~~------~~l~~l~~~a~~~gv~i~ 148 (273)
.|+++=... +.... .. ....+..+. +.++.+.++|+++||.|.
T Consensus 106 LivfPE~~l~g~~~~-~~-~~~~~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv 155 (363)
T cd07587 106 IICFQEAWTMPFAFC-TR-EKLPWCEFAESAEDGPTTKFCQELAKKYNMVIV 155 (363)
T ss_pred EEEccccccCCcccc-cc-ccchHHHHhhccCCChHHHHHHHHHHHcCcEEE
Confidence 888742111 10000 00 011122222 346678899999998665
No 460
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=58.53 E-value=42 Score=29.33 Aligned_cols=122 Identities=14% Similarity=0.156 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHcCCCeEEecC--CC--------C---CCCH---HHHHHHH-HHcCCeeEEEecCCccccCCCCCchhHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWF--PP--------V---GVTL---EQLVAAQ-TRHGLKQVLINTEVDENFGYAAVKGKES 84 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~--~~--------~---~~~~---~~~~~~l-~~~gL~i~~~~~~~~~~~~~~~~~~~~~ 84 (273)
.+.++.+.+.+.||++|+|+. |. + -.++ .++.+.+ +..++.++. =... |...+
T Consensus 67 ~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsv-KiR~----g~~~~----- 136 (309)
T PF01207_consen 67 DLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSV-KIRL----GWDDS----- 136 (309)
T ss_dssp HHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEE-EEES----ECT-------
T ss_pred HHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEE-eccc----ccccc-----
Confidence 677777888888999999995 32 1 1223 3333333 345555543 2221 12111
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCC
Q psy13372 85 EFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSS 164 (273)
Q Consensus 85 ~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~ 164 (273)
.+.+...++.....|+..+++|+=....... ....|+.+ ..+.+...|.+..-- -+.|
T Consensus 137 --~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~----~~a~w~~i-------~~i~~~~~ipvi~NG---------dI~s 194 (309)
T PF01207_consen 137 --PEETIEFARILEDAGVSAITVHGRTRKQRYK----GPADWEAI-------AEIKEALPIPVIANG---------DIFS 194 (309)
T ss_dssp --CHHHHHHHHHHHHTT--EEEEECS-TTCCCT----S---HHHH-------HHCHHC-TSEEEEES---------S--S
T ss_pred --hhHHHHHHHHhhhcccceEEEecCchhhcCC----cccchHHH-------HHHhhcccceeEEcC---------ccCC
Confidence 2346667888889999999999633222211 22334432 233444446655321 3778
Q ss_pred HHHHHHHHHHHhhc
Q psy13372 165 FRVAERLIRELRAH 178 (273)
Q Consensus 165 ~~~~~~li~~~~~~ 178 (273)
.+++.+++ +..
T Consensus 195 ~~d~~~~~---~~t 205 (309)
T PF01207_consen 195 PEDAERML---EQT 205 (309)
T ss_dssp HHHHHHHC---CCH
T ss_pred HHHHHHHH---Hhc
Confidence 99999999 764
No 461
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=58.41 E-value=1.3e+02 Score=26.44 Aligned_cols=73 Identities=12% Similarity=0.039 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEE-EccCCCCCCC---Cccc
Q psy13372 87 RASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTAL-IEPVNQHSVP---GYYL 162 (273)
Q Consensus 87 ~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~-lE~~~~~~~~---~~~~ 162 (273)
.+.+.+.|+.+.+.|...+.+.+-..... . .+.+.++++++++.|+.+. +|.++..... ....
T Consensus 139 ~~~vl~~i~~~~~~Gi~~v~in~v~~~g~------N-------~~ei~~~~~~~~~~gi~~~~ie~mP~g~~~~~~~~~~ 205 (329)
T PRK13361 139 LERVIAGIDAAKAAGFERIKLNAVILRGQ------N-------DDEVLDLVEFCRERGLDIAFIEEMPLGEIDERRRARH 205 (329)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEEECCC------C-------HHHHHHHHHHHHhcCCeEEEEecccCCCccchhhccC
Confidence 56777888888888874333211011111 1 1345677788888888643 5554422100 1123
Q ss_pred CCHHHHHHHH
Q psy13372 163 SSFRVAERLI 172 (273)
Q Consensus 163 ~~~~~~~~li 172 (273)
-+.++..+.+
T Consensus 206 ~~~~e~~~~l 215 (329)
T PRK13361 206 CSSDEVRAII 215 (329)
T ss_pred cCHHHHHHHH
Confidence 4667776767
No 462
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=58.32 E-value=96 Score=26.17 Aligned_cols=63 Identities=13% Similarity=0.014 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCeEEec----CCCCCCCCCCCCCCcchHHHH-----HHHHHHHHHHHhhCCcEEEE
Q psy13372 82 KESEFRASLEKTIQYACALNIPAIHIM----SGKTESSRTQPIASEDPYTTL-----KENLIYACAELERHSLTALI 149 (273)
Q Consensus 82 ~~~~~~~~~~~~i~~a~~lG~~~i~~~----~G~~~~~~~~~~~~~~~~~~~-----~~~l~~l~~~a~~~gv~i~l 149 (273)
..+..++.+.+.++.|+.-|++.|+++ +|...... .....+.. -..+..+.++|+++|+.|.+
T Consensus 13 d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~~gy~~~~~-----~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~i~~ 84 (279)
T TIGR03381 13 DVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQ-----DEDYFALAQPVEGHPAIKRFQALAKELGVVIPV 84 (279)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEcccccCCCCcCCcc-----ccchHhhcCcCCCChHHHHHHHHHHHcCcEEEE
Confidence 345678889999999999999988874 22211110 01111111 14577888999999986653
No 463
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=58.19 E-value=1.3e+02 Score=26.33 Aligned_cols=141 Identities=8% Similarity=-0.023 Sum_probs=0.0
Q ss_pred cccccccccccccccCHHHHHHHHHHcCCCeEEecCCCC-------------CCCHHHHHHHHHHc----CCeeEEEecC
Q psy13372 7 KLAANLTLLFNDLAANYLDKYRVAAELGFRYIESWFPPV-------------GVTLEQLVAAQTRH----GLKQVLINTE 69 (273)
Q Consensus 7 k~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~-------------~~~~~~~~~~l~~~----gL~i~~~~~~ 69 (273)
.+.+++ ...... .+.++.+.++++|||+||++.--. ..+++.+.++++.- ++.++.=...
T Consensus 64 p~i~ql-~g~~~~--~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~ 140 (319)
T TIGR00737 64 PISVQL-FGSDPD--TMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRI 140 (319)
T ss_pred eEEEEE-eCCCHH--HHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEc
Q ss_pred CccccCCCCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEE
Q psy13372 70 VDENFGYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALI 149 (273)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~l 149 (273)
....... .....++.+...|+..+++|....... ...... +..+..+.+..++.+.
T Consensus 141 g~~~~~~------------~~~~~a~~l~~~G~d~i~vh~r~~~~~------~~~~~~-----~~~i~~i~~~~~ipvi- 196 (319)
T TIGR00737 141 GWDDAHI------------NAVEAARIAEDAGAQAVTLHGRTRAQG------YSGEAN-----WDIIARVKQAVRIPVI- 196 (319)
T ss_pred ccCCCcc------------hHHHHHHHHHHhCCCEEEEEccccccc------CCCchh-----HHHHHHHHHcCCCcEE-
Q ss_pred ccCCCCCCCCcccCCHHHHHHHHHHHhhcCCCceeE
Q psy13372 150 EPVNQHSVPGYYLSSFRVAERLIRELRAHGISNVQL 185 (273)
Q Consensus 150 E~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~g~ 185 (273)
...-+.|++++.+++ +..+-..+.+
T Consensus 197 --------~nGgI~~~~da~~~l---~~~gad~Vmi 221 (319)
T TIGR00737 197 --------GNGDIFSPEDAKAML---ETTGCDGVMI 221 (319)
T ss_pred --------EeCCCCCHHHHHHHH---HhhCCCEEEE
No 464
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=58.18 E-value=43 Score=27.97 Aligned_cols=62 Identities=13% Similarity=-0.025 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCCCC-CCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEE
Q psy13372 83 ESEFRASLEKTIQYACALNIPAIHIMSGKT-ESSRTQPIASEDPYTTLKENLIYACAELERHSLTAL 148 (273)
Q Consensus 83 ~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~ 148 (273)
.+..++.+.+.++.|++ |+..|+++=... +.... . .+......-+.+.++.++|+++|+.+.
T Consensus 15 ~~~N~~~~~~~i~~a~~-gadlvvfPE~~l~g~~~~-~--~~~~~~~~~~~~~~l~~la~~~~i~i~ 77 (252)
T cd07575 15 PEANLAHFEEKIEQLKE-KTDLIVLPEMFTTGFSMN-A--EALAEPMNGPTLQWMKAQAKKKGAAIT 77 (252)
T ss_pred HHHHHHHHHHHHHHhhc-CCCEEEeCCcCcCCCCcc-H--HHhhcccCChHHHHHHHHHHHCCeEEE
Confidence 45567888999999998 999988752111 11000 0 000000012456778888888887543
No 465
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=58.17 E-value=1.2e+02 Score=26.18 Aligned_cols=72 Identities=11% Similarity=0.112 Sum_probs=54.0
Q ss_pred CcchHHHHHHHHHHHHHHHhhCCcEEEEcc--CCCCCC----CCcccCCHHHHHHHHHHHhhcCCCceeEeeeccccccc
Q psy13372 122 SEDPYTTLKENLIYACAELERHSLTALIEP--VNQHSV----PGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRI 195 (273)
Q Consensus 122 ~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~--~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~ 195 (273)
+.-.++.-++..++++++|+++||.+--|- +..... ...+.++++++.+++ ++.+-..+.+.+=+.|-.+.
T Consensus 109 S~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv---~~TgvD~LAvaiGt~HG~Y~ 185 (286)
T PRK08610 109 SHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELV---EKTGIDALAPALGSVHGPYK 185 (286)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHH---HHHCCCEEEeeccccccccC
Confidence 345578889999999999999998776664 211100 123468999999999 99888888888888887765
Q ss_pred C
Q psy13372 196 C 196 (273)
Q Consensus 196 ~ 196 (273)
+
T Consensus 186 ~ 186 (286)
T PRK08610 186 G 186 (286)
T ss_pred C
Confidence 4
No 466
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=58.11 E-value=1.2e+02 Score=27.74 Aligned_cols=137 Identities=9% Similarity=0.100 Sum_probs=0.0
Q ss_pred cCHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcC--CeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHH
Q psy13372 21 ANYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHG--LKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYAC 98 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~g--L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~ 98 (273)
..+-+.++.=++.|.|++.++..-. .+..+.+++.+ +.|+|=+...-..|......+.. ..+++.+.+++++
T Consensus 143 d~~~~~ie~qa~~GVDfmTiHcGi~----~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENP--lye~fD~lLeI~~ 216 (431)
T PRK13352 143 DDLFDVIEKQAKDGVDFMTIHCGVT----RETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENP--LYEHFDYLLEILK 216 (431)
T ss_pred HHHHHHHHHHHHhCCCEEEEccchh----HHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCc--hHHHHHHHHHHHH
Q ss_pred HcCCCeE---EecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCc-ccCCHHHHHHHHHH
Q psy13372 99 ALNIPAI---HIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGY-YLSSFRVAERLIRE 174 (273)
Q Consensus 99 ~lG~~~i---~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~-~~~~~~~~~~li~~ 174 (273)
+..+..= .+-||..... ++..-=+=...|.+|++.|.++||.+.+|- |++ .++..+.-+++.
T Consensus 217 ~yDVtlSLGDglRPG~i~Da------~D~aQi~El~~lgeL~~RA~e~gVQvMVEG------PGHvPl~~I~~nv~l~-- 282 (431)
T PRK13352 217 EYDVTLSLGDGLRPGCIADA------TDRAQIQELITLGELVKRAREAGVQVMVEG------PGHVPLDQIEANVKLQ-- 282 (431)
T ss_pred HhCeeeeccCCcCCCccccC------CcHHHHHHHHHHHHHHHHHHHcCCeEEEEC------CCCCCHHHHHHHHHHH--
Q ss_pred Hhhc
Q psy13372 175 LRAH 178 (273)
Q Consensus 175 ~~~~ 178 (273)
+.+
T Consensus 283 -K~l 285 (431)
T PRK13352 283 -KRL 285 (431)
T ss_pred -HHh
No 467
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=58.03 E-value=97 Score=24.85 Aligned_cols=154 Identities=14% Similarity=0.116 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN 101 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG 101 (273)
...+.++.+.+.|++.||++.... ...+.+..+.+.+.+.....++. +. . .-++.|.++|
T Consensus 25 ~~~~~~~~~~~~Gv~~vqlr~k~~-~~~e~~~~~~~~~~~~~~g~gtv------l~--~-----------d~~~~A~~~g 84 (187)
T PRK07455 25 LGLQMAEAVAAGGMRLIEITWNSD-QPAELISQLREKLPECIIGTGTI------LT--L-----------EDLEEAIAAG 84 (187)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCC-CHHHHHHHHHHhCCCcEEeEEEE------Ec--H-----------HHHHHHHHcC
Confidence 455667777888999999997643 23333444444444332222211 11 1 3466677799
Q ss_pred CCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCCC
Q psy13372 102 IPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGIS 181 (273)
Q Consensus 102 ~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 181 (273)
+..++++- ... .+.+.++..++... ++ +.|+.++.+.. + .+.+
T Consensus 85 Adgv~~p~--~~~--------------------~~~~~~~~~~~~~i---------~G--~~t~~e~~~A~---~-~Gad 127 (187)
T PRK07455 85 AQFCFTPH--VDP--------------------ELIEAAVAQDIPII---------PG--ALTPTEIVTAW---Q-AGAS 127 (187)
T ss_pred CCEEECCC--CCH--------------------HHHHHHHHcCCCEE---------cC--cCCHHHHHHHH---H-CCCC
Confidence 99998732 211 22345555666322 34 67888876666 3 5667
Q ss_pred ceeEeeecccccccCCChHHHHHhcCCcceeEEeccCCCCCCCCCCCcccHHHHHHHHHHcCCCceE
Q psy13372 182 NVQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAPDRQEPHARGEIDYAYVFELLAREGYEGYV 248 (273)
Q Consensus 182 ~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~~vHi~d~~~~~~~g~~G~id~~~i~~~L~~~gy~g~~ 248 (273)
.+++ +.....++ .+.++.+...+..+-+. -. |-|+...+-+.++ .|..+.-
T Consensus 128 yv~~----Fpt~~~~G--~~~l~~~~~~~~~ipvv--------ai-GGI~~~n~~~~l~-aGa~~va 178 (187)
T PRK07455 128 CVKV----FPVQAVGG--ADYIKSLQGPLGHIPLI--------PT-GGVTLENAQAFIQ-AGAIAVG 178 (187)
T ss_pred EEEE----CcCCcccC--HHHHHHHHhhCCCCcEE--------Ee-CCCCHHHHHHHHH-CCCeEEE
Confidence 8887 33211111 23444433322222222 23 7788887777776 7877653
No 468
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=58.00 E-value=6.8 Score=34.78 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHcCCCeEEecC
Q psy13372 22 NYLDKYRVAAELGFRYIESWF 42 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~ 42 (273)
.+.++...++++|||+|||+.
T Consensus 150 ~f~~AA~~A~~AGfDGVEIH~ 170 (341)
T PF00724_consen 150 DFAQAARRAKEAGFDGVEIHA 170 (341)
T ss_dssp HHHHHHHHHHHTT-SEEEEEE
T ss_pred HHHHHHHHHHHhccCeEeecc
Confidence 466677788999999999994
No 469
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=57.66 E-value=1.3e+02 Score=26.22 Aligned_cols=95 Identities=9% Similarity=0.034 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCeEEecCCC--C-----CC---CCCCCCCCcchHHHHHHHHHHHHHHHhh-C--CcEE
Q psy13372 81 GKESEFRASLEKTIQYACALNIPAIHIMSGK--T-----ES---SRTQPIASEDPYTTLKENLIYACAELER-H--SLTA 147 (273)
Q Consensus 81 ~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~--~-----~~---~~~~~~~~~~~~~~~~~~l~~l~~~a~~-~--gv~i 147 (273)
+.-+..++.+.++.+.|.+.|...|-+|.+. . .+ .+++. ....+++-.+.+.++++..++ . ++.|
T Consensus 134 ~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~--yGgs~enr~r~~~eii~avr~~~g~d~~i 211 (327)
T cd02803 134 EEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDE--YGGSLENRARFLLEIVAAVREAVGPDFPV 211 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcc--cCCCHHHHHHHHHHHHHHHHHHcCCCceE
Confidence 4567788899999999999999999998752 1 11 11111 222333333444444443332 2 4444
Q ss_pred EEccCCCCCCCCcccCCHHHHHHHHHHHhhcC
Q psy13372 148 LIEPVNQHSVPGYYLSSFRVAERLIRELRAHG 179 (273)
Q Consensus 148 ~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 179 (273)
.+---... ......+.+++.++++.|++.+
T Consensus 212 ~vris~~~--~~~~g~~~~e~~~la~~l~~~G 241 (327)
T cd02803 212 GVRLSADD--FVPGGLTLEEAIEIAKALEEAG 241 (327)
T ss_pred EEEechhc--cCCCCCCHHHHHHHHHHHHHcC
Confidence 44321110 0011247888889995556554
No 470
>KOG0470|consensus
Probab=57.44 E-value=36 Score=33.21 Aligned_cols=72 Identities=13% Similarity=0.143 Sum_probs=50.0
Q ss_pred HHHH-HHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcC
Q psy13372 23 YLDK-YRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALN 101 (273)
Q Consensus 23 ~~~~-l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG 101 (273)
+.+. +..++++|+.+|||..-++ .. ...+..|-.++.+..+.. ..|.++.| .+ +..++..++.|+.+|
T Consensus 256 FteKvlphlK~LG~NaiqLmpi~E-f~-----~~~~s~GY~~~nFFapss-rYgt~~s~---~r-i~efK~lVd~aHs~G 324 (757)
T KOG0470|consen 256 FTEKVLPHLKKLGYNAIQLMPIFE-FG-----HYYASWGYQVTNFFAPSS-RYGTPESP---CR-INEFKELVDKAHSLG 324 (757)
T ss_pred hhhhhhhHHHHhCccceEEeehhh-hh-----hhhhccCcceeEeecccc-cccCCCcc---cc-hHHHHHHHHHHhhCC
Confidence 3444 8899999999999974333 21 345678888888766543 33322222 23 788999999999999
Q ss_pred CCeE
Q psy13372 102 IPAI 105 (273)
Q Consensus 102 ~~~i 105 (273)
...+
T Consensus 325 I~Vl 328 (757)
T KOG0470|consen 325 IEVL 328 (757)
T ss_pred cEEe
Confidence 9865
No 471
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=57.39 E-value=46 Score=27.88 Aligned_cols=64 Identities=13% Similarity=0.051 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecC----CCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEE
Q psy13372 83 ESEFRASLEKTIQYACALNIPAIHIMS----GKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALI 149 (273)
Q Consensus 83 ~~~~~~~~~~~i~~a~~lG~~~i~~~~----G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~l 149 (273)
.+..++.+.+.++.|.+-|++.|+++= |..... ........+...+.++++++.++++|+.+.+
T Consensus 14 ~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~---~~~~~~~~~~~~~~~~~la~~~~~~~i~ii~ 81 (261)
T cd07570 14 LEGNAEKILEAIREAKAQGADLVVFPELSLTGYPPED---LLLRPDFLEAAEEALEELAAATADLDIAVVV 81 (261)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEccchhccCCChHH---HhhCHHHHHHHHHHHHHHHHhcccCCcEEEE
Confidence 456678888999999999999988752 322111 0001222344556788888888877876553
No 472
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=57.24 E-value=1.3e+02 Score=26.13 Aligned_cols=158 Identities=14% Similarity=0.030 Sum_probs=81.5
Q ss_pred CchhHHHHHHHH----HHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 79 VKGKESEFRASL----EKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 79 ~~~~~~~~~~~~----~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
+|+.....++.+ .+.++...+.|+..|.+.-...+.. -.+++...+.....++++.+..++.|..+.++.++.
T Consensus 155 ~pe~~~~~l~~i~~~~~~~~~~~~~~G~d~i~i~d~~~~~~---~isp~~f~e~~~p~~k~i~~~i~~~g~~~~lH~cG~ 231 (330)
T cd03465 155 DPELVHKLLEKCTEFIIRYADALIEAGADGIYISDPWASSS---ILSPEDFKEFSLPYLKKVFDAIKALGGPVIHHNCGD 231 (330)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccccC---CCCHHHHHHHhhHHHHHHHHHHHHcCCceEEEECCC
Confidence 454444444433 4455555556998777743111111 112455667778999999999999999999988542
Q ss_pred CCCCCcccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhcCCcceeEEeccCCCCCCCCCCCccc--H
Q psy13372 155 HSVPGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAPDRQEPHARGEID--Y 232 (273)
Q Consensus 155 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~~vHi~d~~~~~~~g~~G~id--~ 232 (273)
. ...+..+ .+++.. .+.+|... ++.+..+.+++++...=--|. ...... |+.+ .
T Consensus 232 ~----------~~~~~~l---~~~~~d--~~~~d~~~------dl~~~~~~~g~~~~i~G~id~--~~~l~~-gt~eei~ 287 (330)
T cd03465 232 T----------APILELM---ADLGAD--VFSIDVTV------DLAEAKKKVGDKACLMGNLDP--IDVLLN-GSPEEIK 287 (330)
T ss_pred c----------hhHHHHH---HHhCCC--eEeecccC------CHHHHHHHhCCceEEEeCcCh--HHhhcC-CCHHHHH
Confidence 1 1234444 555311 23344332 777777777664432211111 112334 5443 3
Q ss_pred HHHHHHHHHcC-C-Cce-EEEeee-cCCChHHHHH
Q psy13372 233 AYVFELLAREG-Y-EGY-VGLEYK-PQGNTKEGLE 263 (273)
Q Consensus 233 ~~i~~~L~~~g-y-~g~-~~lE~~-~~~~~~~~~~ 263 (273)
+.+.+.|+..+ . .|+ ++..+. +...+.+-++
T Consensus 288 ~~v~~~l~~~~~~~~~~il~~gc~i~~~~p~enl~ 322 (330)
T cd03465 288 EEVKELLEKLLKGGGGYILSSGCEIPPDTPIENIK 322 (330)
T ss_pred HHHHHHHHHHhCCCCCEEEeCCCCCCCCCCHHHHH
Confidence 33444454443 2 333 334333 3455556555
No 473
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=57.20 E-value=92 Score=25.81 Aligned_cols=74 Identities=11% Similarity=0.051 Sum_probs=54.2
Q ss_pred cCHHHHHHHHHHcCCCeEEecCCCCC---CCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHH
Q psy13372 21 ANYLDKYRVAAELGFRYIESWFPPVG---VTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYA 97 (273)
Q Consensus 21 ~~~~~~l~~~~~~G~~~vEl~~~~~~---~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 97 (273)
-+.+.+++.++++|-+.|-+.--.+. ...+.+.++..++|+.+ -|.+ |.. ++++...++.|
T Consensus 135 V~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~l----EPTG---GId---------l~Nf~~I~~i~ 198 (236)
T TIGR03581 135 VPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYL----EPTG---GID---------LDNFEEIVQIA 198 (236)
T ss_pred eeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCcc----CCCC---Ccc---------HHhHHHHHHHH
Confidence 38999999999999999998522222 23466667788888863 1322 121 57889999999
Q ss_pred HHcCCCeEEecCC
Q psy13372 98 CALNIPAIHIMSG 110 (273)
Q Consensus 98 ~~lG~~~i~~~~G 110 (273)
-..|++.+.-|..
T Consensus 199 ldaGv~kviPHIY 211 (236)
T TIGR03581 199 LDAGVEKVIPHVY 211 (236)
T ss_pred HHcCCCeeccccc
Confidence 9999999987754
No 474
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=57.13 E-value=1.2e+02 Score=25.48 Aligned_cols=41 Identities=17% Similarity=0.066 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHcCCCeEEecCCC-C-C-CCHHHHHHHHHHcCCe
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPP-V-G-VTLEQLVAAQTRHGLK 62 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~-~-~-~~~~~~~~~l~~~gL~ 62 (273)
.+.+.+...+..++|.||++..+ . . ...+...+.++...-.
T Consensus 15 ~~~e~~~~~~~~~~Di~E~RvD~l~~~~~~~~~~~~~~e~~~~~ 58 (231)
T COG0710 15 ELKEQAEKSKELDADIVELRVDLLESNVEVLEVAKALREKDPDK 58 (231)
T ss_pred HHHHHHHHhhccCCCEEEEeechhcccchHHHHHHHHHHhccCC
Confidence 56777888899999999999863 2 1 2234444555554444
No 475
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=56.69 E-value=40 Score=29.84 Aligned_cols=67 Identities=15% Similarity=0.115 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHcCCCeEEecCCCCCC----CCCC-CC----CC--cchH---HH---HHHHHHHHHHHHhhCCcEEEE
Q psy13372 87 RASLEKTIQYACALNIPAIHIMSGKTES----SRTQ-PI----AS--EDPY---TT---LKENLIYACAELERHSLTALI 149 (273)
Q Consensus 87 ~~~~~~~i~~a~~lG~~~i~~~~G~~~~----~~~~-~~----~~--~~~~---~~---~~~~l~~l~~~a~~~gv~i~l 149 (273)
++..++.|+.|+..||..|.+.+..... .... +. .. ...+ +. -.+.+++|.++++++|+.+.-
T Consensus 15 l~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi~~~s 94 (329)
T TIGR03569 15 LELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGIEFLS 94 (329)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCCcEEE
Confidence 6788899999999999999887632210 0000 00 00 0111 11 135688999999999999999
Q ss_pred ccCC
Q psy13372 150 EPVN 153 (273)
Q Consensus 150 E~~~ 153 (273)
+|+.
T Consensus 95 tpfd 98 (329)
T TIGR03569 95 TPFD 98 (329)
T ss_pred EeCC
Confidence 9864
No 476
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=56.52 E-value=1.1e+02 Score=25.13 Aligned_cols=127 Identities=11% Similarity=0.018 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEE-ecCCccccCCCCCchhHHHHHHHHHHHHHHHHHc
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLI-NTEVDENFGYAAVKGKESEFRASLEKTIQYACAL 100 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l 100 (273)
++++.++.+.+.|.+.+=...... .+.+.+.+..++++ .+... +.... . . ... ....++.+++.++ ..
T Consensus 16 ~~~~~~~~~~~~Gv~~~v~~~~~~-~~~~~~~~~~~~~~-~i~~~~GihP~-~--~-~~~--~~~~~~~l~~~l~---~~ 84 (252)
T TIGR00010 16 DVEEVIERAKAAGVTAVVAVGTDL-EDFLRALELAEKYP-NVYAAVGVHPL-D--V-DDD--TKEDIKELERLAA---HP 84 (252)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCH-HHHHHHHHHHHHCC-CEEEEEEeCcc-h--h-hcC--CHHHHHHHHHHcc---CC
Confidence 578899999999998876443322 34577788888898 76643 22110 0 1 110 1122333433332 22
Q ss_pred CCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcC
Q psy13372 101 NIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHG 179 (273)
Q Consensus 101 G~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 179 (273)
++..| |..+-+.. . .....+...+.+++..+.|+++|+.+.++.-. ...+..+++ ++.+
T Consensus 85 ~~~~i----GEiGld~~--~-~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~----------~~~~~~~~l---~~~~ 143 (252)
T TIGR00010 85 KVVAI----GETGLDYY--K-ADEYKRRQEEVFRAQLQLAEELNLPVIIHARD----------AEEDVLDIL---REEK 143 (252)
T ss_pred CEEEE----EecccCcC--C-CCCCHHHHHHHHHHHHHHHHHhCCCeEEEecC----------ccHHHHHHH---HhcC
Confidence 22222 22221110 0 11223445578888889999999999998721 334567777 7664
No 477
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=56.52 E-value=1.4e+02 Score=26.08 Aligned_cols=148 Identities=13% Similarity=0.036 Sum_probs=76.7
Q ss_pred HHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHcCC-----CeEEe-cCCCCCCCCC--CC--
Q psy13372 50 EQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNI-----PAIHI-MSGKTESSRT--QP-- 119 (273)
Q Consensus 50 ~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~-----~~i~~-~~G~~~~~~~--~~-- 119 (273)
.++-+..-++|..+...+++......+...--..++..+..++++++|++.-. +..+. -.|-.+.... +.
T Consensus 49 ~~vH~~yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~VaGsiGP~g~~l~~~~~y~ 128 (304)
T PRK09485 49 YQVHLDYFRAGADCAITASYQATFQGFAARGLSEAEAEELIRRSVELAKEARDEFWAEKPLVAGSVGPYGAYLADGSEYR 128 (304)
T ss_pred HHHHHHHHHhCCCEEEeeccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCcccccCCCCCCC
Confidence 33333344679999877765321000100000123345566666666654322 12222 1121111000 00
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhCCcE-EEEccCCCCCCCCcccCCHHHHHHHHHHHhhc--CCCc-eeEeeeccccccc
Q psy13372 120 IASEDPYTTLKENLIYACAELERHSLT-ALIEPVNQHSVPGYYLSSFRVAERLIRELRAH--GISN-VQLQFDFFNAQRI 195 (273)
Q Consensus 120 ~~~~~~~~~~~~~l~~l~~~a~~~gv~-i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~-~g~~~D~~h~~~~ 195 (273)
.+.....+.+.+..++.++...+.||. |.+|+++ +..++..+++.+++. +.|- +.++++.......
T Consensus 129 g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~----------~~~E~~~~~~~~~~~~~~~pv~is~~~~~~g~l~~ 198 (304)
T PRK09485 129 GDYGLSEEELQDFHRPRIEALAEAGADLLACETIP----------NLDEAEALVELLKEEFPGVPAWLSFTLRDGTHISD 198 (304)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEeccC----------CHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcCCC
Confidence 002345677788888888888888996 8899854 455555555333533 3453 5555554444466
Q ss_pred CCChHHHHHhcC
Q psy13372 196 CGDLTHTFGACR 207 (273)
Q Consensus 196 ~~~~~~~i~~~~ 207 (273)
|.++.+.++.+.
T Consensus 199 G~~~~~~~~~l~ 210 (304)
T PRK09485 199 GTPLAEAAALLA 210 (304)
T ss_pred CCCHHHHHHHHh
Confidence 788888888874
No 478
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=56.45 E-value=1.2e+02 Score=25.48 Aligned_cols=123 Identities=12% Similarity=0.063 Sum_probs=73.1
Q ss_pred HHHHHHHHHHcCCCeEEecCC----CCCCCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHH
Q psy13372 23 YLDKYRVAAELGFRYIESWFP----PVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYAC 98 (273)
Q Consensus 23 ~~~~l~~~~~~G~~~vEl~~~----~~~~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~ 98 (273)
+++.++.+..+ .|++-+.+- ++..-+++..++.++||+.+..=++. -+ ..-....+.+.++.|+
T Consensus 14 ~~d~Le~~g~y-ID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~GGtl----------~E-~~~~q~~~~~Yl~~~k 81 (237)
T TIGR03849 14 VEDYLKVCGDY-ITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPGGTL----------FE-IAHSKGKFDEYLNECD 81 (237)
T ss_pred HHHHHHHhhhh-eeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCCccH----------HH-HHHHhhhHHHHHHHHH
Confidence 34444433222 677777543 12123567777788999998742211 11 1123467888999999
Q ss_pred HcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHH
Q psy13372 99 ALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLI 172 (273)
Q Consensus 99 ~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li 172 (273)
.+|...|-+-.|...-. ++ .+.++.+.+++.|.++..|--....... ...++.+.++.+
T Consensus 82 ~lGf~~IEiS~G~~~i~-------~~-------~~~rlI~~~~~~g~~v~~EvG~K~~~~~-~~~~~~~~i~~~ 140 (237)
T TIGR03849 82 ELGFEAVEISDGSMEIS-------LE-------ERCNLIERAKDNGFMVLSEVGKKSPEKD-SELTPDDRIKLI 140 (237)
T ss_pred HcCCCEEEEcCCccCCC-------HH-------HHHHHHHHHHhCCCeEeccccccCCccc-ccCCHHHHHHHH
Confidence 99999999988876432 22 3455667888899988888532211111 234555655555
No 479
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=56.27 E-value=39 Score=28.72 Aligned_cols=64 Identities=20% Similarity=0.228 Sum_probs=42.3
Q ss_pred CCCCcccc----ccccccccccc-ccCHHHHHHHHHHcCCCeEEecCCCC---------------CCCHHHHHHHHHHcC
Q psy13372 1 MAAPSFKL----AANLTLLFNDL-AANYLDKYRVAAELGFRYIESWFPPV---------------GVTLEQLVAAQTRHG 60 (273)
Q Consensus 1 ~~~~~~k~----~~~~~~~~~~~-~~~~~~~l~~~~~~G~~~vEl~~~~~---------------~~~~~~~~~~l~~~g 60 (273)
|+.|+... +-|+.....++ +.+-.+....+-..|+++||+..+.+ ....+.+.+.++++.
T Consensus 4 m~~PLs~YfI~SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tlts~i~f~~v~~~Ik~~A 83 (258)
T cd08631 4 MTQPLCHYFICSSHNTYLMEDQLRGQSSVEGYIRALKRGCRCVEVDVWDGPNGEPIVYHGHTFTSKILFKDVVAAVAQYA 83 (258)
T ss_pred CCcchhhheeecCCCccccCCcccCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCcccCCcCHHHHHHHHHHHh
Confidence 67777555 33443344442 35667788888899999999995421 123578888888887
Q ss_pred CeeE
Q psy13372 61 LKQV 64 (273)
Q Consensus 61 L~i~ 64 (273)
...+
T Consensus 84 F~~s 87 (258)
T cd08631 84 FQVS 87 (258)
T ss_pred ccCC
Confidence 6643
No 480
>PLN02591 tryptophan synthase
Probab=56.15 E-value=1.3e+02 Score=25.58 Aligned_cols=175 Identities=13% Similarity=0.087 Sum_probs=93.0
Q ss_pred HHHHHHHHHHcCCCeEEecCCCC-------------------CCCHHHHHHHHHH----cCCeeEEEecCCccccCCCCC
Q psy13372 23 YLDKYRVAAELGFRYIESWFPPV-------------------GVTLEQLVAAQTR----HGLKQVLINTEVDENFGYAAV 79 (273)
Q Consensus 23 ~~~~l~~~~~~G~~~vEl~~~~~-------------------~~~~~~~~~~l~~----~gL~i~~~~~~~~~~~~~~~~ 79 (273)
..+.++.+.+.|.|.||+.+|+. ..+.+++-+.+++ ....+..+ .+. +.
T Consensus 18 ~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm-~Y~--N~----- 89 (250)
T PLN02591 18 TAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLF-TYY--NP----- 89 (250)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEE-ecc--cH-----
Confidence 34445566778999999999852 0112333333333 23333322 221 11
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCC
Q psy13372 80 KGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPG 159 (273)
Q Consensus 80 ~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~ 159 (273)
.. .-.+.+.++.|++.|+.-+.++- . + .+...++.+.++++|+.+.+=- . |
T Consensus 90 --i~---~~G~~~F~~~~~~aGv~GviipD--L---------P-------~ee~~~~~~~~~~~gl~~I~lv-~----P- 140 (250)
T PLN02591 90 --IL---KRGIDKFMATIKEAGVHGLVVPD--L---------P-------LEETEALRAEAAKNGIELVLLT-T----P- 140 (250)
T ss_pred --HH---HhHHHHHHHHHHHcCCCEEEeCC--C---------C-------HHHHHHHHHHHHHcCCeEEEEe-C----C-
Confidence 11 12566789999999999999851 1 1 1445577788899998755321 1 1
Q ss_pred cccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCC--ChHHHHHhcCCcceeEEeccCCCCCCCCCCCcccHHHHHH
Q psy13372 160 YYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICG--DLTHTFGACRDLIGHVQIAQAPDRQEPHARGEIDYAYVFE 237 (273)
Q Consensus 160 ~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~--~~~~~i~~~~~~i~~vHi~d~~~~~~~g~~G~id~~~i~~ 237 (273)
..+.+.+.++. +.- + |+.+-++..-..|. +....++.+..+++. | .+. .-..|- |.-+...+-+
T Consensus 141 --tt~~~ri~~ia---~~~--~--gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~-~-~~~--Pv~vGF-GI~~~e~v~~ 206 (250)
T PLN02591 141 --TTPTERMKAIA---EAS--E--GFVYLVSSTGVTGARASVSGRVESLLQELKE-V-TDK--PVAVGF-GISKPEHAKQ 206 (250)
T ss_pred --CCCHHHHHHHH---HhC--C--CcEEEeeCCCCcCCCcCCchhHHHHHHHHHh-c-CCC--ceEEeC-CCCCHHHHHH
Confidence 12233344444 332 2 45555554433332 223334443344444 2 232 223467 7777776665
Q ss_pred HHHHcCCCceEE
Q psy13372 238 LLAREGYEGYVG 249 (273)
Q Consensus 238 ~L~~~gy~g~~~ 249 (273)
+.+.|-+|.++
T Consensus 207 -~~~~GADGvIV 217 (250)
T PLN02591 207 -IAGWGADGVIV 217 (250)
T ss_pred -HHhcCCCEEEE
Confidence 66677888655
No 481
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=55.97 E-value=1.8e+02 Score=27.41 Aligned_cols=109 Identities=12% Similarity=0.097 Sum_probs=62.2
Q ss_pred ccccccccCHHHHHHHHHHcCCCeEEecC---CCCC----CCHHHHHHHHHHcCCeeEEEecCCccccCCCCCchhHHHH
Q psy13372 14 LLFNDLAANYLDKYRVAAELGFRYIESWF---PPVG----VTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESEF 86 (273)
Q Consensus 14 ~~~~~~~~~~~~~l~~~~~~G~~~vEl~~---~~~~----~~~~~~~~~l~~~gL~i~~~~~~~~~~~~~~~~~~~~~~~ 86 (273)
.++.+. .+.++++.+++.|=. +.+.+ +.+- .....+.+.+++.|++-+.++.+.++.. ..|....
T Consensus 87 ~~~~n~--~l~~~~~~~~~~~~~-lHl~GL~SdGgVHsh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD---~~p~s~~-- 158 (501)
T TIGR01307 87 EFFANP--ALLGAIDRAKDNNGK-LHLMGLVSDGGVHSHIDHLIALIELAAERGIEKVVLHAFTDGRD---TAPKSAE-- 158 (501)
T ss_pred CcccCH--HHHHHHHHHHhcCCc-eEEEEeccCCCCcchHHHHHHHHHHHHHcCCCeEEEEEecCCCC---CCchhHH--
Confidence 344444 688889998877643 55553 2221 1246677778899996555555544332 3354444
Q ss_pred HHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHH
Q psy13372 87 RASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYA 136 (273)
Q Consensus 87 ~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l 136 (273)
.++++..+..+++|.-.|...+|+.=.. +.+..|+++...++.+
T Consensus 159 -~~~~~l~~~~~~~~~~~iasv~GRyyaM-----DRd~rw~rv~~ay~~~ 202 (501)
T TIGR01307 159 -SYLEQLQAFLKEIGNGRIATISGRYYAM-----DRDQRWDRVEIAYKAI 202 (501)
T ss_pred -HHHHHHHHHHHHhCCEEEEEEeCcceee-----cCccchHHHHHHHHHH
Confidence 4555555555567876777767765322 1344566665555444
No 482
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=55.95 E-value=8.9 Score=34.39 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHcCCCeEEecC
Q psy13372 22 NYLDKYRVAAELGFRYIESWF 42 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~ 42 (273)
++.++.+.++++|||+|||+.
T Consensus 160 ~f~~AA~rA~~AGfDGVEIh~ 180 (362)
T PRK10605 160 DFRQAIANAREAGFDLVELHS 180 (362)
T ss_pred HHHHHHHHHHHcCCCEEEEcc
Confidence 456666788899999999994
No 483
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=55.94 E-value=1.1e+02 Score=24.95 Aligned_cols=151 Identities=17% Similarity=0.175 Sum_probs=87.3
Q ss_pred HHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHH
Q psy13372 94 IQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIR 173 (273)
Q Consensus 94 i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~ 173 (273)
+....+-||..|-+..+.-.+.. .+.+.++.+++++..++.+.+ +..++.++|.+.. ++.+..-+
T Consensus 25 a~~~~~~GAdiIDIg~~st~p~~-~~v~~~eE~~rl~~~l~~i~~--~~~~~plSIDT~~-----------~~v~~~aL- 89 (210)
T PF00809_consen 25 AREQVEAGADIIDIGAESTRPGA-TPVSEEEEMERLVPVLQAIRE--ENPDVPLSIDTFN-----------PEVAEAAL- 89 (210)
T ss_dssp HHHHHHTT-SEEEEESSTSSTTS-SSSHHHHHHHHHHHHHHHHHH--HHTTSEEEEEESS-----------HHHHHHHH-
T ss_pred HHHHHHhcCCEEEecccccCCCC-CcCCHHHHHHHHHHHHHHHhc--cCCCeEEEEECCC-----------HHHHHHHH-
Confidence 55556689999988655422211 122245556666666655555 4578999999843 45555566
Q ss_pred HHhhcCCCceeEeeecccccccCCChHHHHHhcCCcceeEEeccCCCCCCCCC-CCccc-HHHHHHHHHH-------cCC
Q psy13372 174 ELRAHGISNVQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAPDRQEPHA-RGEID-YAYVFELLAR-------EGY 244 (273)
Q Consensus 174 ~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~~vHi~d~~~~~~~g~-~G~id-~~~i~~~L~~-------~gy 244 (273)
+. ...+..|+.-... -..+...+++++..+..+|....+. ..|.+ ...++ +..+.+.+.+ .|.
T Consensus 90 --~~----g~~~ind~~~~~~-~~~~~~l~a~~~~~vV~m~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~Gi 161 (210)
T PF00809_consen 90 --KA----GADIINDISGFED-DPEMLPLAAEYGAPVVLMHSDGNPK-GMPETADYRLDIAEEIIEFLEERIEALEKAGI 161 (210)
T ss_dssp --HH----TSSEEEETTTTSS-STTHHHHHHHHTSEEEEESESSETT-TTTSSHHHSHSHHHHHHHHHHHHHHHHHHTT-
T ss_pred --Hc----CcceEEecccccc-cchhhhhhhcCCCEEEEEecccccc-cccccchhhhhHHHHHHHHHHHHHHHHHHcCC
Confidence 65 3567888877653 4557888889998899999884322 22221 01211 4555555555 798
Q ss_pred Cc-eEEEeee--cCCChHHHHHHHHHh
Q psy13372 245 EG-YVGLEYK--PQGNTKEGLEEFLKT 268 (273)
Q Consensus 245 ~g-~~~lE~~--~~~~~~~~~~~~~~~ 268 (273)
+. .+.+..- +..+..+++. .+++
T Consensus 162 ~~~~Ii~DPgigf~~~~~~~~~-~l~~ 187 (210)
T PF00809_consen 162 PRERIILDPGIGFGKDPEQNLE-LLRN 187 (210)
T ss_dssp -GGGEEEETTTTSSTTHHHHHH-HHHT
T ss_pred CHHHEeeccccCcCCCHHHHHH-HHHH
Confidence 44 4777743 3334555555 4443
No 484
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=55.80 E-value=46 Score=28.46 Aligned_cols=58 Identities=7% Similarity=-0.153 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCC
Q psy13372 86 FRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVN 153 (273)
Q Consensus 86 ~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~ 153 (273)
.+.+-...+..|++|||+.++..+. + ..-.++.+..+...+-+.+++.|++...|+.+
T Consensus 115 ~~~~G~~i~~~Ak~mGAktFVh~sf--p--------rhms~~~l~~Rr~~M~~~C~~lGi~fv~~taP 172 (275)
T PF12683_consen 115 EISRGYTIVWAAKKMGAKTFVHYSF--P--------RHMSYELLARRRDIMEEACKDLGIKFVEVTAP 172 (275)
T ss_dssp HHHHHHHHHHHHHHTT-S-EEEEEE--T--------TGGGSHHHHHHHHHHHHHHHHCT--EEEEEE-
T ss_pred hhhccHHHHHHHHHcCCceEEEEec--h--------hhcchHHHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 4567778999999999998765432 1 23346677888888889999999999999754
No 485
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=55.68 E-value=94 Score=23.98 Aligned_cols=76 Identities=8% Similarity=-0.120 Sum_probs=51.2
Q ss_pred HHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhcCCccee
Q psy13372 133 LIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACRDLIGH 212 (273)
Q Consensus 133 l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~~~~i~~ 212 (273)
-+.+.+.|++.|+.+.+-- .+...++++.+ .+.....-|+.++.+-+.-..--+.|.++.+.--+.-
T Consensus 32 ~~~~~~~a~~~g~~v~~~Q----------SN~EGelId~I---~~a~~~~dgiiINpga~THtSiAl~DAl~~~~~P~VE 98 (146)
T PRK05395 32 EALLEEEAAELGVELEFFQ----------SNHEGELIDRI---HEARDGADGIIINPGAYTHTSVALRDALAAVSIPVIE 98 (146)
T ss_pred HHHHHHHHHHcCCEEEEEe----------eCcHHHHHHHH---HhcccCCcEEEECchHHHHHHHHHHHHHHcCCCCEEE
Confidence 3344567888888766543 33455666667 6664445789998865533234478889998888899
Q ss_pred EEeccCCCC
Q psy13372 213 VQIAQAPDR 221 (273)
Q Consensus 213 vHi~d~~~~ 221 (273)
||+++...|
T Consensus 99 VHiSNi~aR 107 (146)
T PRK05395 99 VHLSNIHAR 107 (146)
T ss_pred EecCCcccc
Confidence 999986444
No 486
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=55.67 E-value=1.5e+02 Score=26.36 Aligned_cols=62 Identities=13% Similarity=0.048 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCeE-Ee-cCCCCCCCC----------------CCCCCCcchHHHHHHHHHHHHHHHhhCCc
Q psy13372 84 SEFRASLEKTIQYACALNIPAI-HI-MSGKTESSR----------------TQPIASEDPYTTLKENLIYACAELERHSL 145 (273)
Q Consensus 84 ~~~~~~~~~~i~~a~~lG~~~i-~~-~~G~~~~~~----------------~~~~~~~~~~~~~~~~l~~l~~~a~~~gv 145 (273)
+..+..+++.++..++-|++.+ .+ |+|...... ..+. +.+..+.+++.+.+.+..|.+.|.
T Consensus 73 ~~~i~~~~~l~~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~m-t~~eI~~i~~~f~~aA~~a~~aGf 151 (353)
T cd02930 73 PRQAAGHRLITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPREL-SEEEIEQTIEDFARCAALAREAGY 151 (353)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4568899999999999999854 43 566542100 0012 456678889999999999988875
Q ss_pred E
Q psy13372 146 T 146 (273)
Q Consensus 146 ~ 146 (273)
.
T Consensus 152 D 152 (353)
T cd02930 152 D 152 (353)
T ss_pred C
Confidence 3
No 487
>KOG3111|consensus
Probab=55.54 E-value=1.1e+02 Score=24.86 Aligned_cols=41 Identities=15% Similarity=-0.006 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHh
Q psy13372 92 KTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELE 141 (273)
Q Consensus 92 ~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~ 141 (273)
..|+.+.+.||..++..++.+.+. ....+++.|+..+.-|.
T Consensus 181 ~ti~~~a~AGAN~iVaGsavf~a~---------d~~~vi~~lr~~v~~a~ 221 (224)
T KOG3111|consen 181 STIDKAAEAGANMIVAGSAVFGAA---------DPSDVISLLRNSVEKAA 221 (224)
T ss_pred chHHHHHHcCCCEEEecceeecCC---------CHHHHHHHHHHHHhhhh
Confidence 467788889999999988877554 23456666666655443
No 488
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=55.18 E-value=1.4e+02 Score=25.66 Aligned_cols=99 Identities=19% Similarity=0.184 Sum_probs=55.5
Q ss_pred CHHHHHH---HHHHcCCCeEEecCCCC-------------------CCCHH---HHHHHHHHcCCeeEEEecCCccccCC
Q psy13372 22 NYLDKYR---VAAELGFRYIESWFPPV-------------------GVTLE---QLVAAQTRHGLKQVLINTEVDENFGY 76 (273)
Q Consensus 22 ~~~~~l~---~~~~~G~~~vEl~~~~~-------------------~~~~~---~~~~~l~~~gL~i~~~~~~~~~~~~~ 76 (273)
+++..++ .+-+.|.|.+|+-+|+. ..+.+ ++.+.+++.+.++..+.+.+ ++.
T Consensus 29 ~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y-~Np-- 105 (265)
T COG0159 29 DLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTY-YNP-- 105 (265)
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEe-ccH--
Confidence 4555544 55678999999998852 01122 33334444445544322211 121
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEE
Q psy13372 77 AAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALI 149 (273)
Q Consensus 77 ~~~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~l 149 (273)
.. ..-+.+.++.|++.|+.-+.++- .+.+ .=..+.+.++++|+.+.+
T Consensus 106 -----i~---~~Gie~F~~~~~~~GvdGlivpD--LP~e----------------e~~~~~~~~~~~gi~~I~ 152 (265)
T COG0159 106 -----IF---NYGIEKFLRRAKEAGVDGLLVPD--LPPE----------------ESDELLKAAEKHGIDPIF 152 (265)
T ss_pred -----HH---HhhHHHHHHHHHHcCCCEEEeCC--CChH----------------HHHHHHHHHHHcCCcEEE
Confidence 11 23455678889999999998842 2211 112456677799987553
No 489
>PRK13404 dihydropyrimidinase; Provisional
Probab=55.13 E-value=1.5e+02 Score=27.71 Aligned_cols=109 Identities=12% Similarity=0.158 Sum_probs=65.1
Q ss_pred HHHHHHHHcCCCeEEecCCCC--CCC---HHHHHHHHHHcCCeeEEEecCCcc----------------ccCCCCCchhH
Q psy13372 25 DKYRVAAELGFRYIESWFPPV--GVT---LEQLVAAQTRHGLKQVLINTEVDE----------------NFGYAAVKGKE 83 (273)
Q Consensus 25 ~~l~~~~~~G~~~vEl~~~~~--~~~---~~~~~~~l~~~gL~i~~~~~~~~~----------------~~~~~~~~~~~ 83 (273)
+.+..+.+.|.++|-+...++ ..+ ..++.+.++++|+.+..+.-.... ..+....|...
T Consensus 139 ~~v~~l~~~G~~~iKi~~~~~~~~~~~~~l~~~~~~a~~~g~~V~~Hae~~~~i~~~~~~~~~~G~~~~~~~~~~rp~~~ 218 (477)
T PRK13404 139 EELPALIAQGYTSFKVFMTYDDLKLDDRQILDVLAVARRHGAMVMVHAENHDMIAWLTKRLLAAGLTAPKYHAISRPMLA 218 (477)
T ss_pred HHHHHHHHcCCCEEEEEecCCCCCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHCCCcchhhccccCCHHH
Confidence 456677788999998763211 122 344445566779988876532110 00011123322
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 84 SEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 84 ~~~~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
-...+.+.+.+|...|++..++|.... ..+ ++...+++.|+.+..|..++
T Consensus 219 --E~~~v~~~~~la~~~g~~~hi~Hvs~~---------------~~~----~~i~~~k~~g~~vt~e~~ph 268 (477)
T PRK13404 219 --EREATHRAIALAELVDVPILIVHVSGR---------------EAA----EQIRRARGRGLKIFAETCPQ 268 (477)
T ss_pred --HHHHHHHHHHHHHHhCCCEEEEECCCH---------------HHH----HHHHHHHHCCCeEEEEEChh
Confidence 235688999999999999877776421 112 33345777899999998654
No 490
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=55.06 E-value=1.2e+02 Score=25.22 Aligned_cols=162 Identities=13% Similarity=-0.002 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEe-cCC--CCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCc
Q psy13372 84 SEFRASLEKTIQYACALNIPAIHI-MSG--KTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGY 160 (273)
Q Consensus 84 ~~~~~~~~~~i~~a~~lG~~~i~~-~~G--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~ 160 (273)
...++.+.+.|+.|.+.|...|.- |.. ........+ ......+.+.+.++.++...+...-.+++|.++- |..
T Consensus 58 ~~~~~~ld~~v~~a~~~gi~vild~h~~~~w~~~~~~~~-~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NE---P~~ 133 (281)
T PF00150_consen 58 ETYLARLDRIVDAAQAYGIYVILDLHNAPGWANGGDGYG-NNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNE---PNG 133 (281)
T ss_dssp HHHHHHHHHHHHHHHHTT-EEEEEEEESTTCSSSTSTTT-THHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSS---GCS
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccccc-cchhhHHHHHhhhhhhccccCCCCcEEEEEecCC---ccc
Confidence 456889999999999999998644 432 111110000 0222233455567777777766667788887653 222
Q ss_pred ccCC-----------HHHHHHHHHHHhhcCCCceeEeeecccccccCCChHHHHHhc-----CCcceeEEeccCCCC-CC
Q psy13372 161 YLSS-----------FRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGAC-----RDLIGHVQIAQAPDR-QE 223 (273)
Q Consensus 161 ~~~~-----------~~~~~~li~~~~~~~~~~~g~~~D~~h~~~~~~~~~~~i~~~-----~~~i~~vHi~d~~~~-~~ 223 (273)
.... .+-+.+++..+++++ |+.-+.++...+.. +........ ..-+..+|.-+.... ..
T Consensus 134 ~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~-~~~~i~~~~~~~~~---~~~~~~~~~P~~~~~~~~~~~H~Y~~~~~~~~ 209 (281)
T PF00150_consen 134 GNDDANWNAQNPADWQDWYQRAIDAIRAAD-PNHLIIVGGGGWGA---DPDGAAADNPNDADNNDVYSFHFYDPYDFSDQ 209 (281)
T ss_dssp TTSTTTTSHHHTHHHHHHHHHHHHHHHHTT-SSSEEEEEEHHHHT---BHHHHHHHSTTTTTTSEEEEEEEETTTCHHTT
T ss_pred cCCccccccccchhhhhHHHHHHHHHHhcC-CcceeecCCCcccc---ccchhhhcCcccccCceeEEeeEeCCCCcCCc
Confidence 1111 122344443347776 55556666544321 222211112 234667888863110 00
Q ss_pred CC--C-----CCcccHHHHHHHHHHcCCCceEEEeeec
Q psy13372 224 PH--A-----RGEIDYAYVFELLAREGYEGYVGLEYKP 254 (273)
Q Consensus 224 ~g--~-----~G~id~~~i~~~L~~~gy~g~~~lE~~~ 254 (273)
.. . ...-.+......+.+.|. ..++=|+..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~-pv~~gE~G~ 246 (281)
T PF00150_consen 210 WNPGNWGDASALESSFRAALNWAKKNGK-PVVVGEFGW 246 (281)
T ss_dssp TSTCSHHHHHHHHHHHHHHHHHHHHTTS-EEEEEEEES
T ss_pred cccccchhhhHHHHHHHHHHHHHHHcCC-eEEEeCcCC
Confidence 00 0 012235666677777776 356667764
No 491
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=54.95 E-value=43 Score=28.43 Aligned_cols=64 Identities=17% Similarity=0.128 Sum_probs=42.5
Q ss_pred CCCCcccc----ccccccccccc-ccCHHHHHHHHHHcCCCeEEecCCCC---------------CCCHHHHHHHHHHcC
Q psy13372 1 MAAPSFKL----AANLTLLFNDL-AANYLDKYRVAAELGFRYIESWFPPV---------------GVTLEQLVAAQTRHG 60 (273)
Q Consensus 1 ~~~~~~k~----~~~~~~~~~~~-~~~~~~~l~~~~~~G~~~vEl~~~~~---------------~~~~~~~~~~l~~~g 60 (273)
|+.|+... +-|+.....++ +.+-.+....+-..|+++||+..+.+ ....+.+.++++++.
T Consensus 4 m~~PLs~YfI~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wdG~~~eP~V~HG~tlts~i~f~dv~~~I~~~A 83 (254)
T cd08596 4 LQYPLSYYYIESSHNTYLTGHQLKGESSVELYSQVLLTGCRCVELDCWDGDDGMPIIYHGHTLTTKIPFKDVVEAINRSA 83 (254)
T ss_pred cccchhhheeecCccccccCCccCCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCcccCcCHHHHHHHHHHHh
Confidence 67777555 33453343442 45678888889999999999995421 123577888888876
Q ss_pred CeeE
Q psy13372 61 LKQV 64 (273)
Q Consensus 61 L~i~ 64 (273)
...+
T Consensus 84 F~~S 87 (254)
T cd08596 84 FITS 87 (254)
T ss_pred ccCC
Confidence 6644
No 492
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=54.91 E-value=1.3e+02 Score=25.46 Aligned_cols=58 Identities=7% Similarity=0.062 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHH
Q psy13372 89 SLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVA 168 (273)
Q Consensus 89 ~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~ 168 (273)
-+.+.++.+++.|+..+.+|.- + .+...++.+.++++|+.+.+=. + | .++.+.+
T Consensus 103 G~e~f~~~~~~aGvdgviipDl-----------p-------~ee~~~~~~~~~~~gl~~i~lv-~----P---~T~~eri 156 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVADL-----------P-------LEESGDLVEAAKKHGVKPIFLV-A----P---NADDERL 156 (256)
T ss_pred hHHHHHHHHHHcCCCEEEECCC-----------C-------hHHHHHHHHHHHHCCCcEEEEE-C----C---CCCHHHH
Confidence 4567888999999999999721 0 1235567788899998755322 1 1 2345566
Q ss_pred HHHH
Q psy13372 169 ERLI 172 (273)
Q Consensus 169 ~~li 172 (273)
..++
T Consensus 157 ~~i~ 160 (256)
T TIGR00262 157 KQIA 160 (256)
T ss_pred HHHH
Confidence 6666
No 493
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=54.75 E-value=1.6e+02 Score=26.43 Aligned_cols=84 Identities=12% Similarity=0.005 Sum_probs=44.2
Q ss_pred CCeeEEEecCCccccCCCCCchhHHHHHHHHHHHHHHHHHc----C---CCeEEecCCCCCCCCCCCCCCcchHHHHHHH
Q psy13372 60 GLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACAL----N---IPAIHIMSGKTESSRTQPIASEDPYTTLKEN 132 (273)
Q Consensus 60 gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l----G---~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~ 132 (273)
+..+..+++..+.. . .+++.. .+.++++++++..+ | .+.|-+.. +++.... +...+..++.+.+.
T Consensus 165 ~~~l~GlH~H~GS~--~-~~~~~~---~~~~~~~~~l~~~l~~~~g~~~~~~IDiGG-Gf~v~y~-~~~~~~~~~~~~~~ 236 (379)
T cd06836 165 RPWLNGLHVHVGSQ--G-CELSLL---AEGIRRVVDLAEEINRRVGRRQITRIDIGG-GLPVNFE-SEDITPTFADYAAA 236 (379)
T ss_pred CCCeEEEEEecccC--C-CCHHHH---HHHHHHHHHHHHHHHHHhCCCCCcEEEeCC-ccccCCC-CCCCCCCHHHHHHH
Confidence 44566666654311 1 234443 44445555555554 4 45666653 3432211 00122357777777
Q ss_pred HHHHHHHHhhCCcEEEEcc
Q psy13372 133 LIYACAELERHSLTALIEP 151 (273)
Q Consensus 133 l~~l~~~a~~~gv~i~lE~ 151 (273)
+++.++..-..++++.+||
T Consensus 237 i~~~l~~~~~~~~~l~~EP 255 (379)
T cd06836 237 LKAAVPELFDGRYQLVTEF 255 (379)
T ss_pred HHHHHHHHhccCcEEEEec
Confidence 7776654333479999998
No 494
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=54.74 E-value=1.4e+02 Score=25.58 Aligned_cols=75 Identities=15% Similarity=0.172 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHcCCCeEEecC--CCC------CCCHH---HHHHHHHHc-CCeeEEEecCCccccCCCCCchhHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWF--PPV------GVTLE---QLVAAQTRH-GLKQVLINTEVDENFGYAAVKGKESEFRAS 89 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~--~~~------~~~~~---~~~~~l~~~-gL~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (273)
++.+..+.+.+.|+|+||++. |.. ..+.+ ++.+.+++. ++.+.. -.. .+. + .+.
T Consensus 112 ~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~v-Kl~----~~~--~-------~~~ 177 (289)
T cd02810 112 DYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLV-KLS----PYF--D-------LED 177 (289)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEE-EeC----CCC--C-------HHH
Confidence 667778888899999999985 321 11233 333334433 333321 111 001 1 234
Q ss_pred HHHHHHHHHHcCCCeEEecCC
Q psy13372 90 LEKTIQYACALNIPAIHIMSG 110 (273)
Q Consensus 90 ~~~~i~~a~~lG~~~i~~~~G 110 (273)
+.+.++.+.+.|+..++++.+
T Consensus 178 ~~~~a~~l~~~Gad~i~~~~~ 198 (289)
T cd02810 178 IVELAKAAERAGADGLTAINT 198 (289)
T ss_pred HHHHHHHHHHcCCCEEEEEcc
Confidence 667777888899999998744
No 495
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=54.66 E-value=1.3e+02 Score=25.44 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEEEecC
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTE 69 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~~~~~ 69 (273)
..++.++.++++|.++|=+..-.. ....++.+.++++|+....+..|
T Consensus 103 G~e~f~~~~~~aGvdgviipDlp~-ee~~~~~~~~~~~gl~~i~lv~P 149 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVADLPL-EESGDLVEAAKKHGVKPIFLVAP 149 (256)
T ss_pred hHHHHHHHHHHcCCCEEEECCCCh-HHHHHHHHHHHHCCCcEEEEECC
Confidence 568899999999999998873211 34678889999999998765443
No 496
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=54.58 E-value=28 Score=31.15 Aligned_cols=55 Identities=13% Similarity=-0.002 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEcc
Q psy13372 87 RASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEP 151 (273)
Q Consensus 87 ~~~~~~~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 151 (273)
.+..+..|+.|++.|.+.|.+-.-- +++..+...+.+++++.+|+++|+.+.+--
T Consensus 13 ~~~~~~yi~~a~~~Gf~~iFTSL~i----------pe~~~~~~~~~~~~l~~~a~~~~~~v~~Di 67 (357)
T PF05913_consen 13 FEENKAYIEKAAKYGFKRIFTSLHI----------PEDDPEDYLERLKELLKLAKELGMEVIADI 67 (357)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEE-------------------HHHHHHHHHHHHHHCT-EEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEECCCCc----------CCCCHHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 4567788999999999988663221 223345778899999999999999887764
No 497
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=54.57 E-value=20 Score=29.48 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=33.5
Q ss_pred ccccccccCHHHHHHHHHHcCCCeEEecCCCCCCCHHHHHHHHHHcCCeeEE
Q psy13372 14 LLFNDLAANYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVL 65 (273)
Q Consensus 14 ~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gL~i~~ 65 (273)
.+|.+. +.++..+.+++.+++.|+++++.+ .+.+..+.++.++.+.-
T Consensus 57 gVf~n~--~~~~i~~i~~~~~ld~VQlHG~e~---~~~~~~l~~~~~~~v~k 103 (208)
T COG0135 57 GVFVNE--SIEEILEIAEELGLDAVQLHGDED---PEYIDQLKEELGVPVIK 103 (208)
T ss_pred EEECCC--CHHHHHHHHHhcCCCEEEECCCCC---HHHHHHHHhhcCCceEE
Confidence 355555 899999999999999999998743 44444444444677763
No 498
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=54.52 E-value=1.4e+02 Score=25.64 Aligned_cols=132 Identities=11% Similarity=-0.023 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHcCCCeEEecCCCCC---CCHH---HHHH-HHHHcC--CeeEEEecCCccccCCCCCchhHHHHHHHHHH
Q psy13372 22 NYLDKYRVAAELGFRYIESWFPPVG---VTLE---QLVA-AQTRHG--LKQVLINTEVDENFGYAAVKGKESEFRASLEK 92 (273)
Q Consensus 22 ~~~~~l~~~~~~G~~~vEl~~~~~~---~~~~---~~~~-~l~~~g--L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (273)
.+.+.++++.+.|.++|=+.+..++ .+.+ ++.+ ..+..+ +.+.. ++. .. ..+...+
T Consensus 23 ~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~-gv~------~~--------~~~~~i~ 87 (292)
T PRK03170 23 ALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIA-GTG------SN--------STAEAIE 87 (292)
T ss_pred HHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEe-ecC------Cc--------hHHHHHH
Confidence 5677888999999999998865221 1222 2222 222222 33332 111 10 1345666
Q ss_pred HHHHHHHcCCCeEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhCCcEEEEccCCCCCCCCcccCCHHHHHHHH
Q psy13372 93 TIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLI 172 (273)
Q Consensus 93 ~i~~a~~lG~~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~~li 172 (273)
.++.|+.+|+..+.+.+..... ...+.++++++++++. .++.+.+-|.+.. -+ ..-+++...++.
T Consensus 88 ~a~~a~~~G~d~v~~~pP~~~~---------~~~~~i~~~~~~ia~~---~~~pv~lYn~P~~--~g-~~l~~~~~~~L~ 152 (292)
T PRK03170 88 LTKFAEKAGADGALVVTPYYNK---------PTQEGLYQHFKAIAEA---TDLPIILYNVPGR--TG-VDILPETVARLA 152 (292)
T ss_pred HHHHHHHcCCCEEEECCCcCCC---------CCHHHHHHHHHHHHhc---CCCCEEEEECccc--cC-CCCCHHHHHHHH
Confidence 7788899999998885533211 1235677777777664 4677777775421 12 223444444443
Q ss_pred HHHhhcCCCceeEeeec
Q psy13372 173 RELRAHGISNVQLQFDF 189 (273)
Q Consensus 173 ~~~~~~~~~~~g~~~D~ 189 (273)
+ .|++.-.=|.
T Consensus 153 ---~---~p~v~giK~s 163 (292)
T PRK03170 153 ---E---HPNIVGIKEA 163 (292)
T ss_pred ---c---CCCEEEEEEC
Confidence 2 3776555554
No 499
>smart00642 Aamy Alpha-amylase domain.
Probab=54.48 E-value=60 Score=25.49 Aligned_cols=66 Identities=9% Similarity=0.120 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHcCCCeEEecCCCCCCC---CC---CCCC---CcchHHHHHHHHHHHHHHHhhCCcEEEEccCCC
Q psy13372 88 ASLEKTIQYACALNIPAIHIMSGKTESS---RT---QPIA---SEDPYTTLKENLIYACAELERHSLTALIEPVNQ 154 (273)
Q Consensus 88 ~~~~~~i~~a~~lG~~~i~~~~G~~~~~---~~---~~~~---~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 154 (273)
+.+..-++..+.+|+..|-+.|-..... .. .+.+ ....+- ..+.|+++++.|+++||++.+.-+.+
T Consensus 19 ~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~G-t~~d~~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 19 QGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFG-TMEDFKELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccC-CHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4555566788899999998865321110 00 0000 000111 13567888888888888888886543
No 500
>PRK06801 hypothetical protein; Provisional
Probab=54.44 E-value=1.4e+02 Score=25.78 Aligned_cols=70 Identities=9% Similarity=0.007 Sum_probs=52.0
Q ss_pred chHHHHHHHHHHHHHHHhhCCcEEEEcc--CCCCCC-------CCcccCCHHHHHHHHHHHhhcCCCceeEeeecccccc
Q psy13372 124 DPYTTLKENLIYACAELERHSLTALIEP--VNQHSV-------PGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQR 194 (273)
Q Consensus 124 ~~~~~~~~~l~~l~~~a~~~gv~i~lE~--~~~~~~-------~~~~~~~~~~~~~li~~~~~~~~~~~g~~~D~~h~~~ 194 (273)
...+..++..++++++|+++||.+..|. +...+. .....++++++.+++ ++.+-..+++.+=+.|-..
T Consensus 108 l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~---~~tgvD~LAvaiGt~Hg~y 184 (286)
T PRK06801 108 LEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFV---DRTGIDALAVAIGNAHGKY 184 (286)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHH---HHHCcCEEEeccCCCCCCC
Confidence 3467788889999999999999887775 221110 112456889999999 9998888999888888765
Q ss_pred cC
Q psy13372 195 IC 196 (273)
Q Consensus 195 ~~ 196 (273)
.+
T Consensus 185 ~~ 186 (286)
T PRK06801 185 KG 186 (286)
T ss_pred CC
Confidence 44
Done!