RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13372
(273 letters)
>d1k77a_ c.1.15.5 (A:) Hypothetical protein YgbM (EC1530)
{Escherichia coli [TaxId: 562]}
Length = 260
Score = 137 bits (346), Expect = 4e-40
Identities = 83/261 (31%), Positives = 134/261 (51%), Gaps = 15/261 (5%)
Query: 7 KLAANLTLLFNDLAANYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLI 66
+ AANL+++F ++ +++++ A + GF +E FP + Q+ ++ L L
Sbjct: 3 RFAANLSMMFTEVP--FIERFAAARKAGFDAVEFLFPY-NYSTLQIQKQLEQNHLTLALF 59
Query: 67 NTEVDE----NFGYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIAS 122
NT + +G +A+ G+E E A ++ ++YA ALN +H+M+G +
Sbjct: 60 NTAPGDINAGEWGLSALPGREHEAHADIDLALEYALALNCEQVHVMAGV----VPAGEDA 115
Query: 123 EDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGISN 182
E +N+ YA H L+E ++ P Y SS A ++ E+ N
Sbjct: 116 ERYRAVFIDNIRYAADRFAPHGKRILVEALSPGVKPHYLFSSQYQALAIVEEV---ARDN 172
Query: 183 VQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAPDRQEPHARGEIDYAYVFELLARE 242
V +Q D F+AQ++ G+LTH HVQIA PDR EP GEI+Y ++F L
Sbjct: 173 VFIQLDTFHAQKVDGNLTHLIRDYAGKYAHVQIAGLPDRHEPD-DGEINYPWLFRLFDEV 231
Query: 243 GYEGYVGLEYKPQGNTKEGLE 263
GY+G++G EYKP+G T+EGL
Sbjct: 232 GYQGWIGCEYKPRGLTEEGLG 252
>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis
[TaxId: 1423]}
Length = 278
Score = 81.2 bits (199), Expect = 1e-18
Identities = 45/277 (16%), Positives = 81/277 (29%), Gaps = 30/277 (10%)
Query: 7 KLAANLTLLFNDLAANYLDKYRVAAELGFRYIESWFPPV------GVTLEQLVAAQTRHG 60
KL N + N + + G+ YIE +L+ L H
Sbjct: 2 KLCFNEATTLENS--NLKLDLELCEKHGYDYIEIRTMDKLPEYLKDHSLDDLAEYFQTHH 59
Query: 61 LKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPI 120
+K + +N V N +E + ++ L + + + TE +
Sbjct: 60 IKPLALNALVFFNNRDEK---GHNEIITEFKGMMETCKTLGVKYVVAVPLVTEQKIVKE- 115
Query: 121 ASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGI 180
+ + + L E + + +E V +++F A ++
Sbjct: 116 ---EIKKSSVDVLTELSDIAEPYGVKIALEFVGHPQ---CTVNTFEQAYEIVNT---VNR 166
Query: 181 SNVQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAPDRQEPHAR---------GEID 231
NV L D F+ + ++ A I I D G ID
Sbjct: 167 DNVGLVLDSFHFHAMGSNIESLKQADGKKIFIYHIDDTEDFPIGFLTDEDRVWPGQGAID 226
Query: 232 YAYVFELLAREGYEGYVGLEYKPQGNTKEGLEEFLKT 268
L G+ V +E K EE ++T
Sbjct: 227 LDAHLSALKEIGFSDVVSVELFRPEYYKLTAEEAIQT 263
>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435
{Salmonella typhimurium [TaxId: 90371]}
Length = 271
Score = 72.2 bits (176), Expect = 1e-15
Identities = 42/268 (15%), Positives = 73/268 (27%), Gaps = 41/268 (15%)
Query: 1 MAAPSFKLAANLTLLFNDLAANYLDKYRVAAELGFRYIESWFPPV------GVTLEQLVA 54
M + N + L + +R+ L F +E + Q+
Sbjct: 1 MNIEKTRFCIN-RKIAPGL--SIEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRN 57
Query: 55 AQTRHGLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTES 114
++GL+ V IN N E E ++ A + A+ + +
Sbjct: 58 LAEKYGLEIVTINAVYPFN-------QLTEEVVKKTEGLLRDAQGVGARALVLCPLNDGT 110
Query: 115 SRTQPIASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRE 174
P E + R+ + L+EP+ SS R A +
Sbjct: 111 --------IVPPEVTVEAIKRLSDLFARYDIQGLVEPLGFRV------SSLRSAVWAQQL 156
Query: 175 LRAHGISNVQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAPD-----------RQE 223
+R G L F + + IG V ++ D R
Sbjct: 157 IREAGSPFKVLLDTFHHHLYEEAEKEFASRIDISAIGLVHLSGVEDTRPTEALADEQRIM 216
Query: 224 PHARGEIDYAYVFELLAREGYEGYVGLE 251
+ + + L GY G E
Sbjct: 217 LSEKDVMQNYQQVQRLENMGYRGIYAFE 244
>d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 250
Score = 71.0 bits (173), Expect = 3e-15
Identities = 37/231 (16%), Positives = 59/231 (25%), Gaps = 35/231 (15%)
Query: 28 RVAAELGFRYIE--SWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVKGKESE 85
+ A G + +E E L AA GL+ V + +
Sbjct: 26 PLLAMAGAQRVELREELFAGPPDTEALTAAIQLQGLECVFSSPLELWRED--------GQ 77
Query: 86 FRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAELERHSL 145
LE T++ A A + + + +L L RH L
Sbjct: 78 LNPELEPTLRRAEACGAGWLKVSL---------------GLLPEQPDLAALGRRLARHGL 122
Query: 146 TALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGA 205
L+E V ER R ++ + FD N +
Sbjct: 123 QLLVEND-----QTPQGGRIEVLERFFRLAERQQ-LDLAMTFDIGNWRWQEQAADEAALR 176
Query: 206 CRDLIGHVQIAQAPDRQEPH----ARGEIDYAYVFELLAREGYEGYVGLEY 252
+G+V ++ D Y LL +EY
Sbjct: 177 LGRYVGYVHCKAVIRNRDGKLVAVPPSAADLQYWQRLLQHFPEGVARAIEY 227
>d2g0wa1 c.1.15.4 (A:10-284) Hypothetical protein Lmo2234 {Listeria
monocytogenes [TaxId: 1639]}
Length = 275
Score = 68.5 bits (166), Expect = 3e-14
Identities = 41/281 (14%), Positives = 78/281 (27%), Gaps = 46/281 (16%)
Query: 6 FKLAANLTLLFNDLAANYLDKYRVAAELGFRYIESWFPPV------GVTLEQLVAAQTRH 59
+ + L +++ + + +VAAE GF I G+T E ++ H
Sbjct: 2 CPITISSYTLGTEVS--FPKRVKVAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDEH 59
Query: 60 GLKQVLINTEVDENFGYAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQP 119
+K + + + + +E + + T A + I+
Sbjct: 60 NMKVTEVEY----ITQWGTAEDRTAEQQKKEQTTFHMARLFGVKHINCGLL--------- 106
Query: 120 IASEDPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHG 179
+ P + L C E + P ++ + A R+
Sbjct: 107 --EKIPEEQIIVALGELCDRAEELIIGLEFMPY-------SGVADLQAAWRVAEACGRD- 156
Query: 180 ISNVQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAPDRQEPHA------------R 227
N QL D ++ R D I +Q+ +
Sbjct: 157 --NAQLICDTWHWARANQTAESIKNVPADRIVSIQLCDVHETPYKELREESLHDRLAPGE 214
Query: 228 GEIDYAYVFELLAREGYEG-YVGLEYKPQGNTKEGLEEFLK 267
G D ++L G +G+E GLE
Sbjct: 215 GYGDTVGFAKILKEHGVNPRVMGVEVISDSMVATGLEYAAL 255
>d1tz9a_ c.1.15.6 (A:) Mannonate dehydratase UxuA {Enterococcus
faecalis (Streptococcus faecalis) [TaxId: 1351]}
Length = 353
Score = 45.3 bits (107), Expect = 4e-06
Identities = 41/258 (15%), Positives = 67/258 (25%), Gaps = 34/258 (13%)
Query: 16 FNDLAANYLDKYRVAAELGFRYIESWFPPVGVTLEQLVAAQTRHGLKQVLINTEVDENFG 75
+ NY R + G + F P+ + +A + G +L + V EN
Sbjct: 80 RDHYIDNYRQTLRNLGKCGISLVCYSFKPIFGWAKTDLAYENEDGSLSLLFDQAVVENMQ 139
Query: 76 YAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYT-----TLK 130
+ Y + + G E Q + Y L
Sbjct: 140 PEDM----------------YQLIHSQSKGFRLPGWEEERLQQFQELKAMYAGVTEEDLV 183
Query: 131 ENLIY----ACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGISNVQLQ 186
ENL Y E ++ I P + + L R L +
Sbjct: 184 ENLRYFLERVIPVCEEENIKMGIHPDDPPWEIFGLPRITKNLADLKRILSLVDSPANGIT 243
Query: 187 FDFFNAQRICGDLT-HTFGACRDLIGHVQIAQAPDRQE--------PHARGEIDYAYVFE 237
F + + I V E P G +D A + +
Sbjct: 244 FCTGSLGADPTNDLPTMIREIGHRINFVHFRNVKYLGEHRFEETAHPSVAGSLDMAELMQ 303
Query: 238 LLAREGYEGYVGLEYKPQ 255
L GYEG + ++
Sbjct: 304 ALVDVGYEGVIRPDHGRA 321
>d1muwa_ c.1.15.3 (A:) D-xylose isomerase {Streptomyces
olivochromogenes [TaxId: 1963]}
Length = 386
Score = 40.0 bits (93), Expect = 2e-04
Identities = 37/259 (14%), Positives = 71/259 (27%), Gaps = 33/259 (12%)
Query: 24 LDKYRVAAELGFRYIESWFPPVGV------------TLEQLVAAQTRHGLKQVLINTEV- 70
++ + AELG + F + +++ A G+ + T +
Sbjct: 36 VETVQRLAELGAHGVT--FHDDDLIPFGSSDTERESHIKRFRQALDATGMTVPMATTNLF 93
Query: 71 -DENFGYAAVKGKESEFRAS----LEKTIQYACALNIPAIHIMSG--KTESSRTQPIASE 123
F + + R + I A L G ES + +
Sbjct: 94 THPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAKTYVAWGGREGAESGAAKDVRVA 153
Query: 124 DPYTTLKENLIYACAELERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGISNV 183
+L+ + + + IEP L + A I L
Sbjct: 154 LDRMKEAFDLLGEYVTSQGYDIRFAIEPKPNEPRGDILLPTVGHALAFIERLERPE--LY 211
Query: 184 QLQFDFFNAQRICGDLTHTF--GACRDLIGHVQIAQAP------DRQEPHARGEIDYAYV 235
+ + + Q + H + H+ + D + + V
Sbjct: 212 GVNPEVGHEQMAGLNFPHGIAQALWAGKLFHIDLNGQSGIKYDQDLRFGAGDLRAAFWLV 271
Query: 236 FELLAREGYEGYVGLEYKP 254
+LL GYEG ++KP
Sbjct: 272 -DLLESAGYEGPRHFDFKP 289
>d1qtwa_ c.1.15.1 (A:) Endonuclease IV {Escherichia coli [TaxId:
562]}
Length = 285
Score = 30.2 bits (67), Expect = 0.20
Identities = 36/245 (14%), Positives = 67/245 (27%), Gaps = 38/245 (15%)
Query: 30 AAELGFRYIE-------SWF--PPVGVTLEQLVAAQTRHGLKQVLINTEVDENFGYAAVK 80
AAE+ W P T+++ AA ++ I
Sbjct: 21 AAEIDATAFALFTKNQRQWRAAPLTTQTIDEFKAACEKYHYTSAQILPHDSYLINLGHPV 80
Query: 81 GKESEF-RASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASEDPYTTLKENLIYACAE 139
+ E R + +Q L + ++ G I+ ED + E++ A +
Sbjct: 81 TEALEKSRDAFIDEMQRCEQLGLSLLNFHPGS----HLMQISEEDCLARIAESINIALDK 136
Query: 140 LERHSLTALIEPVNQHSVPGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDL 199
+ TA+IE F +I + S V + D +A DL
Sbjct: 137 TQGV--TAVIENTAGQ--GSNLGFKFEHLAAIIDGVEDK--SRVGVCIDTCHAFAAGYDL 190
Query: 200 THTFGACRDLIGHVQIAQAP------------------DRQEPHARGEIDYAYVFELLAR 241
+ + DR G I + ++
Sbjct: 191 RTPAECEKTFADFARTVGFKYLRGMHLNDAKSTFGSRVDRHHSLGEGNIGHDAFRWIMQD 250
Query: 242 EGYEG 246
+ ++G
Sbjct: 251 DRFDG 255
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 27.9 bits (61), Expect = 1.0
Identities = 6/80 (7%), Positives = 13/80 (16%), Gaps = 1/80 (1%)
Query: 169 ERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAPDRQEPHARG 228
E+ + G ++ + + H R
Sbjct: 19 EKWVAAAVREGWRVGTVKHHGHG-GEPARPEGVDSVRHERAGAVATAVEGDGLLQLHLRR 77
Query: 229 EIDYAYVFELLAREGYEGYV 248
+ L V
Sbjct: 78 PLWRLDDVLALYAPLRLDLV 97
>d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase
{Enterobacter cloacae [TaxId: 550]}
Length = 178
Score = 27.2 bits (59), Expect = 1.6
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 163 SSFRVAERLIRELRAHGISNV 183
+ + VA+ L+ L G ++
Sbjct: 1 TPYCVADYLLDRLTDCGADHL 21
>d1x2la1 a.35.1.7 (A:9-95) Homeobox protein Cux-2, CUTL2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 25.9 bits (57), Expect = 1.7
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 9/57 (15%)
Query: 156 SVPGYYLSSFRVAERLIRELRAHGISNVQLQFDFFNAQRICGDLTHTFGACRDLIGH 212
L + +A ++ +L H I Q F + L + G+ +++
Sbjct: 3 GAEEEQLDTAEIAFQVKEQLLKHNIG--QRVF----GHYV---LGLSQGSVSEILAR 50
>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA
polymerases {Escherichia coli [TaxId: 562]}
Length = 388
Score = 27.7 bits (61), Expect = 1.7
Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 5/100 (5%)
Query: 130 KENLIYACAELERHSLTAL-IEPVNQHSVPGYYLSSFRVAERLIRELRAHGI----SNVQ 184
+ + LT L ++ ++ V G Y + R + LR G+ ++V+
Sbjct: 49 VPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVR 108
Query: 185 LQFDFFNAQRICGDLTHTFGACRDLIGHVQIAQAPDRQEP 224
+ + I + I + ++ PD + P
Sbjct: 109 PPERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYRPP 148
>d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas
mobilis [TaxId: 542]}
Length = 186
Score = 27.1 bits (59), Expect = 1.9
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 164 SFRVAERLIRELRAHGISNV 183
S+ V L L G+ +
Sbjct: 1 SYTVGTYLAERLVQIGLKHH 20
>d1bxba_ c.1.15.3 (A:) D-xylose isomerase {Thermus aquaticus, subsp.
Thermophilus [TaxId: 271]}
Length = 387
Score = 25.7 bits (56), Expect = 6.4
Identities = 13/71 (18%), Positives = 17/71 (23%), Gaps = 6/71 (8%)
Query: 194 RICGDLTHTFGACRDLIGHVQIAQAPDRQEPHARGEIDYAY-----VFELLAREGYEGYV 248
DL G + A AR D+ + +GY
Sbjct: 119 LETMDLGAELG-AEIYVVWPGREGAEVEATGKARKVWDWVREALNFMAAYAEDQGYGYRF 177
Query: 249 GLEYKPQGNTK 259
LE KP
Sbjct: 178 ALEPKPNEPRG 188
>d1yqea1 c.56.7.1 (A:1-278) Hypothetical protein AF0625
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 278
Score = 25.6 bits (56), Expect = 6.9
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 76 YAAVKGKESEFRASLEKTIQYACALNIPAIHIMSGKTESSRTQPIASE 123
++ EF ++E T ++ P+ G TE A+E
Sbjct: 120 LRERLDRKPEFEFTMEVTHHGPSEISKPSAFYEIGSTEEEWKDREAAE 167
>d1ylea1 d.108.1.8 (A:1-338) Arginine N-succinyltransferase, alpha
chain, AstA {Pseudomonas aeruginosa [TaxId: 287]}
Length = 338
Score = 25.4 bits (56), Expect = 8.2
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 28/104 (26%)
Query: 166 RVAERLIRELR----AHGIS----NVQLQF---DFFNAQRICGDLTHTFGACRDLIGHVQ 214
R A+ ++ E+ G S V F ++ A+++ G + TF A +L+ H
Sbjct: 155 RFADAVVVEIVGYSDEQGESPFWNAVGRNFFDLNYIEAEKLSGLKSRTFLA--ELMPHYP 212
Query: 215 I--------AQAPDRQEPHARGEIDYAYVFELLAREG--YEGYV 248
I AQ Q H R +I F++L REG + Y+
Sbjct: 213 IYVPLLPDAAQESMGQ-VHPRAQI----TFDILMREGFETDNYI 251
>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl
O-methyltransferase {Thermotoga maritima [TaxId: 2336]}
Length = 213
Score = 24.9 bits (53), Expect = 9.3
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 167 VAERLIRELRAHGISN 182
+ E+L L+ +G+S+
Sbjct: 1 MREKLFWILKKYGVSD 16
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.396
Gapped
Lambda K H
0.267 0.0468 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,001,495
Number of extensions: 45607
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 20
Length of query: 273
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 189
Effective length of database: 1,254,276
Effective search space: 237058164
Effective search space used: 237058164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.4 bits)