BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13373
(525 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The
Moeb-Moad Protein Complex
pdb|1JWA|B Chain B, Structure Of The Atp-Bound Moeb-Moad Protein Complex
pdb|1JW9|B Chain B, Structure Of The Native Moeb-Moad Protein Complex
Length = 249
Score = 185 bits (470), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 144/241 (59%), Gaps = 5/241 (2%)
Query: 132 RYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSN 191
RY+RQI+L GQE L ++ VLIVG GG G QYLA++GVG L L D+D V LSN
Sbjct: 11 RYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSN 70
Query: 192 LHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACD 251
L RQ +H+ T+GQPKV SA+ ++ IN + + LLD + +I +D+V+D D
Sbjct: 71 LQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTD 130
Query: 252 NAPTRYLLNDACLREGRPLVSASALGLEGQLCVYNYKGG-PCYRCIYPVPPPAETVGTCG 310
N R LN C PLVS +A+ +EGQ+ V+ Y+ G PCYRC+ + E TC
Sbjct: 131 NVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGEPCYRCLSRL--FGENALTCV 188
Query: 311 DNGVLGPVPGVMGTLQAVETIKLLIGL--PVMDKLLVYDAELSKFLSVKLRKKKEDCVCA 368
+ GV+ P+ GV+G+LQA+E IK+L G P K+++YDA +F +KL + VC
Sbjct: 189 EAGVMAPLIGVIGSLQAMEAIKMLAGYGKPASGKIVMYDAMTCQFREMKLMRNPGCEVCG 248
Query: 369 H 369
Sbjct: 249 Q 249
>pdb|1ZUD|1 Chain 1, Structure Of This-Thif Protein Complex
pdb|1ZUD|3 Chain 3, Structure Of This-Thif Protein Complex
Length = 251
Score = 162 bits (409), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 108/240 (45%), Positives = 149/240 (62%), Gaps = 6/240 (2%)
Query: 132 RYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSN 191
RYSRQILLD + + GQ+KLL++ VLI+G GG G+P YLA +GVGTL LAD D V LSN
Sbjct: 8 RYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSN 67
Query: 192 LHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACD 251
L RQ++ TT I +PK +++ ++ +N + + A Q L D + R DVV+D D
Sbjct: 68 LQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDCTD 127
Query: 252 NAPTRYLLNDACLREGRPLVSASALGLEGQLCVYN--YKGGPCYRCIYPVPPPAETVGTC 309
N TR +N AC+ PL++ASA+G GQL V ++ G CYRC++P E C
Sbjct: 128 NMATRQEINAACVALNTPLITASAVGFGGQLMVLTPPWEQG-CYRCLWPDNQEPER--NC 184
Query: 310 GDNGVLGPVPGVMGTLQAVETIKLLIGLPV-MDKLLVYDAELSKFLSVKLRKKKEDCVCA 368
GV+GPV GVMGTLQA+E IKLL G+ +L ++D + S++ S+ LR+ VC
Sbjct: 185 RTAGVVGPVVGVMGTLQALEAIKLLSGIETPAGELRLFDGKSSQWRSLALRRASGCPVCG 244
>pdb|1ZFN|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|D Chain D, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|D Chain D, Structural Analysis Of Escherichia Coli Thif
Length = 253
Score = 162 bits (409), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 108/240 (45%), Positives = 149/240 (62%), Gaps = 6/240 (2%)
Query: 132 RYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSN 191
RYSRQILLD + + GQ+KLL++ VLI+G GG G+P YLA +GVGTL LAD D V LSN
Sbjct: 10 RYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSN 69
Query: 192 LHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACD 251
L RQ++ TT I +PK +++ ++ +N + + A Q L D + R DVV+D D
Sbjct: 70 LQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDCTD 129
Query: 252 NAPTRYLLNDACLREGRPLVSASALGLEGQLCVYN--YKGGPCYRCIYPVPPPAETVGTC 309
N TR +N AC+ PL++ASA+G GQL V ++ G CYRC++P E C
Sbjct: 130 NMATRQEINAACVALNTPLITASAVGFGGQLMVLTPPWEQG-CYRCLWPDNQEPER--NC 186
Query: 310 GDNGVLGPVPGVMGTLQAVETIKLLIGLPV-MDKLLVYDAELSKFLSVKLRKKKEDCVCA 368
GV+GPV GVMGTLQA+E IKLL G+ +L ++D + S++ S+ LR+ VC
Sbjct: 187 RTAGVVGPVVGVMGTLQALEAIKLLSGIETPAGELRLFDGKSSQWRSLALRRASGCPVCG 246
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 2/154 (1%)
Query: 148 EKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPK 207
E + VL+VG GG G ++ L +G + L D D +++SNL+RQ + +G+ K
Sbjct: 13 EAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSK 72
Query: 208 VTSAKR-FISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLRE 266
AK + + IV + ++++ + R++ +V++A DN R +N CL
Sbjct: 73 AQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAA 132
Query: 267 GRPLVSASALGLEGQLCVYNYKGGPCYRCIYPVP 300
PL+ + G GQ+ CY C +P P
Sbjct: 133 DVPLIESGTAGYLGQVTTIKKGVTECYEC-HPKP 165
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 660
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 2/154 (1%)
Query: 148 EKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPK 207
E + VL+VG GG G ++ L +G + L D D +++SNL+RQ + +G+ K
Sbjct: 33 EAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSK 92
Query: 208 VTSAKR-FISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLRE 266
AK + + IV + ++++ + R++ +V++A DN R +N CL
Sbjct: 93 AQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAA 152
Query: 267 GRPLVSASALGLEGQLCVYNYKGGPCYRCIYPVP 300
PL+ + G GQ+ CY C +P P
Sbjct: 153 DVPLIESGTAGYLGQVTTIKKGVTECYEC-HPKP 185
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 551
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 2/154 (1%)
Query: 148 EKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPK 207
E + VL+VG GG G ++ L +G + L D D +++SNL+RQ + +G+ K
Sbjct: 15 EAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSK 74
Query: 208 VTSAKR-FISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLRE 266
AK + + IV + ++++ + R++ +V++A DN R +N CL
Sbjct: 75 AQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAA 134
Query: 267 GRPLVSASALGLEGQLCVYNYKGGPCYRCIYPVP 300
PL+ + G GQ+ CY C +P P
Sbjct: 135 DVPLIESGTAGYLGQVTTIKKGVTECYEC-HPKP 167
>pdb|3H5A|A Chain A, Crystal Structure Of E. Coli Mccb
pdb|3H5A|B Chain B, Crystal Structure Of E. Coli Mccb
pdb|3H5A|C Chain C, Crystal Structure Of E. Coli Mccb
pdb|3H5A|D Chain D, Crystal Structure Of E. Coli Mccb
Length = 358
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 108/228 (47%), Gaps = 33/228 (14%)
Query: 132 RYSRQILLDQV----GVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRV 187
RYSR L Q V+ Q+KL NA V+I+GCGG G+ LA SG+G + L D D++
Sbjct: 91 RYSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQI 150
Query: 188 ELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDTSNACDI--IRRYDV 245
E +NL RQV+ + +G+ K KR + RN+ + + L+ ++ D+ + D+
Sbjct: 151 ENTNLTRQVLFSEDDVGKNKTEVIKR--ELLKRNSEISVSEIALNINDYTDLHKVPEADI 208
Query: 246 VVDACDNAPTRYL--LNDACLREGRPLVSA---SALGLEGQLCVYNYKGGPCYRCIYPVP 300
V + D+ P + +N C+R +P ++A + + + G L V G CY C V
Sbjct: 209 WVVSADH-PFNLINWVNKYCVRANQPYINAGYVNDIAVFGPLYVPGKTG--CYECQKVV- 264
Query: 301 PPAETVGTCGDN--------------GVLGPVPGVMGTLQAVETIKLL 334
A+ G+ +N PV V L A + IK +
Sbjct: 265 --ADLYGSEKENIDHKIKLINSRFKPATFAPVNNVAAALCAADVIKFI 310
>pdb|3H5N|A Chain A, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|B Chain B, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|C Chain C, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|D Chain D, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5R|A Chain A, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|B Chain B, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|C Chain C, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|D Chain D, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H9G|A Chain A, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|B Chain B, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|C Chain C, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|D Chain D, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9J|A Chain A, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|B Chain B, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|C Chain C, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|D Chain D, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9Q|A Chain A, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|B Chain B, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|C Chain C, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|D Chain D, Crystal Structure Of E. Coli Mccb + Semet Mcca
Length = 353
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 108/230 (46%), Gaps = 33/230 (14%)
Query: 130 TERYSRQILLDQV----GVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185
RYSR L Q V+ Q+KL NA V+I+GCGG G+ LA SG+G + L D D
Sbjct: 92 NNRYSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDND 151
Query: 186 RVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDTSNACDI--IRRY 243
++E +NL RQV+ + +G+ K KR + RN+ + + L+ ++ D+ +
Sbjct: 152 QIENTNLTRQVLFSEDDVGKNKTEVIKR--ELLKRNSEISVSEIALNINDYTDLHKVPEA 209
Query: 244 DVVVDACDNAPTRYL--LNDACLREGRPLVSA---SALGLEGQLCVYNYKGGPCYRCIYP 298
D+ V + D+ P + +N C+R +P ++A + + + G L V G CY C
Sbjct: 210 DIWVVSADH-PFNLINWVNKYCVRANQPYINAGYVNDIAVFGPLYVPGKTG--CYECQKV 266
Query: 299 VPPPAETVGTCGDN--------------GVLGPVPGVMGTLQAVETIKLL 334
V A+ G+ +N PV V L A + IK +
Sbjct: 267 V---ADLYGSEKENIDHKIKLINSRFKPATFAPVNNVAAALCAADVIKFI 313
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
pdb|4II3|A Chain A, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|C Chain C, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
Length = 1001
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 13/160 (8%)
Query: 132 RYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGT-----LGLADYDR 186
RY QI + G QEK+ + S +VG G G ++ A GV T + + D D
Sbjct: 398 RYDGQIAV--FGSEFQEKIASLSTFLVGAGAIGCEMLKNWAMMGVATGESGHISVTDMDS 455
Query: 187 VELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTI--VHAYQTLLDTSNAC----DII 240
+E SNL+RQ + +G+ K A +S +N + + +YQ + + +
Sbjct: 456 IEKSNLNRQFLFRPRDVGKLKSECASTAVSIMNPSLTGKITSYQERVGPESEGIFGDEFF 515
Query: 241 RRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEG 280
+ +V +A DN R ++ C+ +PL+ + LG +G
Sbjct: 516 EKLSLVTNALDNVEARMYVDRRCVFFEKPLLESGTLGTKG 555
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 67/150 (44%), Gaps = 7/150 (4%)
Query: 133 YSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNL 192
YSRQ+ + +G +++ ++VLI+GC G G + + +GV ++ L D + +L
Sbjct: 9 YSRQLYV--LGHEAMKQMSQSNVLIIGCKGLGVEIAKNVCLAGVKSVTLYDPQPTRIEDL 66
Query: 193 HRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDN 252
Q T IG P+ ++ +N+ V L + + ++ + VV +
Sbjct: 67 SSQYFLTEDDIGVPRAKVTVSKLAELNQYVPVSVVDEL-----STEYLKNFKCVVVTETS 121
Query: 253 APTRYLLNDACLREGRPLVSASALGLEGQL 282
+ +ND + ++A + GL G +
Sbjct: 122 LTKQLEINDFTHKNHIAYIAADSRGLFGSI 151
>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|3CMM|C Chain C, Crystal Structure Of The Uba1-Ubiquitin Complex
Length = 1015
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 13/172 (7%)
Query: 124 KFSKDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGT----- 178
K ++ + RY QI + G+ Q+K+ N+ V +VG G G ++ A G+G+
Sbjct: 399 KTTQPVNSRYDNQIAV--FGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGY 456
Query: 179 LGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINR------NTIVHAYQTLLD 232
+ + D D +E SNL+RQ + +G+ K A + A+N N + +
Sbjct: 457 IVVTDNDSIEKSNLNRQFLFRPKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETE 516
Query: 233 TSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCV 284
D V +A DN R ++ C+ +PL+ + LG +G V
Sbjct: 517 EIFNDSFWESLDFVTNALDNVDARTYVDRRCVFYRKPLLESGTLGTKGNTQV 568
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 19/159 (11%)
Query: 133 YSRQILLDQVGVMGQEKLLN---ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVEL 189
YSRQ+ V+G+E +L ++VLI+G G G + + +GV ++ + D + V+L
Sbjct: 10 YSRQLY-----VLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQL 64
Query: 190 SNLHRQVIHTTHTIGQPK--VTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVV 247
++L Q T IGQ + VT AK ++ +N V+ +L D + + ++ VVV
Sbjct: 65 ADLSTQFFLTEKDIGQKRGDVTRAK--LAELNAYVPVNVLDSLDDVTQ----LSQFQVVV 118
Query: 248 DACDNAPT--RYLLNDACLREGRPLVSASALGLEGQLCV 284
A D + +N+ C G +S+ GL G V
Sbjct: 119 -ATDTVSLEDKVKINEFCHSSGIRFISSETRGLFGNTFV 156
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 805
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 17/169 (10%)
Query: 155 VLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRF 214
VL++G GG G ++ LA SG + + D D +++SNL+RQ + IG+PK A F
Sbjct: 414 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 473
Query: 215 IS--AINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLN----------DA 262
++ N N + H + + D ++ R++ ++V D+ R +N D
Sbjct: 474 LNDRVPNCNVVPH-FNKIQDFNDT--FYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 530
Query: 263 CLREGR--PLVSASALGLEGQLCVYNYKGGPCYRCIYPVPPPAETVGTC 309
L PL+ G +G V C C + PP C
Sbjct: 531 VLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMC 579
>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|D Chain D, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 463
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 17/169 (10%)
Query: 155 VLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRF 214
VL++G GG G ++ LA SG + + D D +++SNL+RQ + IG+PK A F
Sbjct: 72 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 131
Query: 215 IS--AINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLN----------DA 262
++ N N + H + + D ++ R++ ++V D+ R +N D
Sbjct: 132 LNDRVPNCNVVPH-FNKIQDFNDT--FYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 188
Query: 263 CLREGR--PLVSASALGLEGQLCVYNYKGGPCYRCIYPVPPPAETVGTC 309
L PL+ G +G V C C + PP C
Sbjct: 189 VLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMC 237
>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
Length = 434
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 17/162 (10%)
Query: 155 VLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRF 214
VL++G GG G ++ LA SG + + D D +++SNL+RQ + IG+PK A F
Sbjct: 43 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 102
Query: 215 IS--AINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLN----------DA 262
++ N N + H + + D ++ R++ ++V D+ R +N D
Sbjct: 103 LNDRVPNCNVVPH-FNKIQDFNDT--FYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 159
Query: 263 CLREGR--PLVSASALGLEGQLCVYNYKGGPCYRCIYPVPPP 302
L PL+ G +G V C C + PP
Sbjct: 160 VLDPSSIVPLIDGGTEGFKGNAAVILPGMTACIECTLELYPP 201
>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|D Chain D, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
Length = 434
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 17/169 (10%)
Query: 155 VLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRF 214
VL++G GG G ++ LA SG + + D D +++SNL+RQ + IG+PK A F
Sbjct: 43 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 102
Query: 215 IS--AINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLN----------DA 262
++ N N + H + + D ++ R++ ++V D+ R +N D
Sbjct: 103 LNDRVPNCNVVPH-FNKIQDFNDT--FYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 159
Query: 263 CLREGR--PLVSASALGLEGQLCVYNYKGGPCYRCIYPVPPPAETVGTC 309
L PL+ G +G V C C + PP C
Sbjct: 160 VLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMC 208
>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|D Chain D, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 444
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 17/169 (10%)
Query: 155 VLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRF 214
VL++G GG G ++ LA SG + + D D +++SNL+RQ + IG+PK A F
Sbjct: 53 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 112
Query: 215 IS--AINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLN----------DA 262
++ N N + H + + D ++ R++ ++V D+ R +N D
Sbjct: 113 LNDRVPNCNVVPH-FNKIQDFNDT--FYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 169
Query: 263 CLREGR--PLVSASALGLEGQLCVYNYKGGPCYRCIYPVPPPAETVGTC 309
L PL+ G +G V C C + PP C
Sbjct: 170 VLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMC 218
>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 434
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 17/162 (10%)
Query: 155 VLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRF 214
VL++G GG G ++ LA SG + + D D +++SNL+RQ + IG+PK A F
Sbjct: 43 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 102
Query: 215 IS--AINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLN----------DA 262
++ N N + H + + D ++ R++ ++V D+ R +N D
Sbjct: 103 LNDRVPNCNVVPH-FNKIQDFNDT--FYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 159
Query: 263 CLREGR--PLVSASALGLEGQLCVYNYKGGPCYRCIYPVPPP 302
L PL+ G +G V C C + PP
Sbjct: 160 VLDPSSIVPLIDGGTEGFKGNAQVILPGMTACIECTLELYPP 201
>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 434
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 17/162 (10%)
Query: 155 VLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRF 214
VL++G GG G ++ LA SG + + D D +++SNL+RQ + IG+PK A F
Sbjct: 43 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 102
Query: 215 IS--AINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLN----------DA 262
++ N N + H + + D ++ R++ ++V D+ R +N D
Sbjct: 103 LNDRVPNCNVVPH-FNKIQDFNDT--FYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 159
Query: 263 CLREGR--PLVSASALGLEGQLCVYNYKGGPCYRCIYPVPPP 302
L PL+ G +G V C C + PP
Sbjct: 160 VLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPP 201
>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 431
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 17/162 (10%)
Query: 155 VLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRF 214
VL++G GG G ++ LA SG + + D D +++SNL+RQ + IG+PK A F
Sbjct: 40 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 99
Query: 215 IS--AINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLN----------DA 262
++ N N + H + + D ++ R++ ++V D+ R +N D
Sbjct: 100 LNDRVPNCNVVPH-FNKIQDFNDT--FYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 156
Query: 263 CLREGR--PLVSASALGLEGQLCVYNYKGGPCYRCIYPVPPP 302
L PL+ G +G V C C + PP
Sbjct: 157 VLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPP 198
>pdb|3GUC|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp
pdb|3GUC|B Chain B, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp
pdb|3H8V|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Atp
pdb|3H8V|B Chain B, Human Ubiquitin-Activating Enzyme 5 In Complex With Atp
Length = 292
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 109/243 (44%), Gaps = 25/243 (10%)
Query: 139 LDQVGVMGQ-EKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVI 197
L ++G++ EK+ +V IVG GG GS + L G+G L L DYD+VEL+N++R +
Sbjct: 22 LKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNR-LF 80
Query: 198 HTTHTIGQPKVTSAKRFISAINRN----------TIVHAYQTLLD--TSNACDIIRRYDV 245
H G KV +A+ + IN + T V +Q +D ++ + + D+
Sbjct: 81 FQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDL 140
Query: 246 VVDACDNAPTRYLLNDACLREGRPL----VSASALGLEGQLCVYNYKGGPCYRCIYPVPP 301
V+ DN R +N AC G+ VS +A+ QL + C+ C P+
Sbjct: 141 VLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESA--CFACAPPLVV 198
Query: 302 PAET-VGTCGDNGVLGP-VPGVMGTLQAV---ETIKLLIGLPVMDKLLVYDAELSKFLSV 356
A T GV +P MG + + +K L+ + L Y+A F ++
Sbjct: 199 AANIDEKTLKREGVCAASLPTTMGVVAGILVQNVLKFLLNFGTVSFYLGYNAMQDFFPTM 258
Query: 357 KLR 359
++
Sbjct: 259 SMK 261
>pdb|1R4M|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 529
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 8/156 (5%)
Query: 131 ERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELS 190
++Y RQ+ L G GQE L +A V ++ TG+ ++ L G+G+ + D ++V
Sbjct: 11 QKYDRQLRL--WGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGE 68
Query: 191 NLHRQVIHTTHTIGQPKVTSAKRFISAINRNT----IVHAYQTLLDTSNACDIIRRYDVV 246
+ +IG+ + +A F+ +N + + + + LLD N R+ VV
Sbjct: 69 DAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLD--NDPSFFCRFTVV 126
Query: 247 VDACDNAPTRYLLNDACLREGRPLVSASALGLEGQL 282
V T L D PL+ GL G +
Sbjct: 127 VATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYM 162
>pdb|3GZN|A Chain A, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|C Chain C, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 534
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 8/156 (5%)
Query: 131 ERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELS 190
++Y RQ+ L G GQE L +A V ++ TG+ ++ L G+G+ + D ++V
Sbjct: 11 QKYDRQLRL--WGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGE 68
Query: 191 NLHRQVIHTTHTIGQPKVTSAKRFISAINRNT----IVHAYQTLLDTSNACDIIRRYDVV 246
+ +IG+ + +A F+ +N + + + + LLD N R+ VV
Sbjct: 69 DAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLD--NDPSFFCRFTVV 126
Query: 247 VDACDNAPTRYLLNDACLREGRPLVSASALGLEGQL 282
V T L D PL+ GL G +
Sbjct: 127 VATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYM 162
>pdb|2NVU|A Chain A, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 536
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 8/156 (5%)
Query: 131 ERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELS 190
++Y RQ+ L G GQE L +A V ++ TG+ ++ L G+G+ + D ++V
Sbjct: 13 QKYDRQLRL--WGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGE 70
Query: 191 NLHRQVIHTTHTIGQPKVTSAKRFISAINRNT----IVHAYQTLLDTSNACDIIRRYDVV 246
+ +IG+ + +A F+ +N + + + + LLD N R+ VV
Sbjct: 71 DAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLD--NDPSFFCRFTVV 128
Query: 247 VDACDNAPTRYLLNDACLREGRPLVSASALGLEGQL 282
V T L D PL+ GL G +
Sbjct: 129 VATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYM 164
>pdb|1YOV|A Chain A, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|C Chain C, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 537
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 8/156 (5%)
Query: 131 ERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELS 190
++Y RQ+ L G GQE L +A V ++ TG+ ++ L G+G+ + D ++V
Sbjct: 14 QKYDRQLRL--WGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGE 71
Query: 191 NLHRQVIHTTHTIGQPKVTSAKRFISAINRNT----IVHAYQTLLDTSNACDIIRRYDVV 246
+ +IG+ + +A F+ +N + + + + LLD N R+ VV
Sbjct: 72 DAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLD--NDPSFFCRFTVV 129
Query: 247 VDACDNAPTRYLLNDACLREGRPLVSASALGLEGQL 282
V T L D PL+ GL G +
Sbjct: 130 VATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYM 165
>pdb|1TT5|A Chain A, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|C Chain C, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|3DBH|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBL|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBR|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 531
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 8/156 (5%)
Query: 131 ERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELS 190
++Y RQ+ L G GQE L +A V ++ TG+ ++ L G+G+ + D ++V
Sbjct: 13 QKYDRQLRL--WGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGE 70
Query: 191 NLHRQVIHTTHTIGQPKVTSAKRFISAINRNT----IVHAYQTLLDTSNACDIIRRYDVV 246
+ +IG+ + +A F+ +N + + + + LLD N R+ VV
Sbjct: 71 DAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLD--NDPSFFCRFTVV 128
Query: 247 VDACDNAPTRYLLNDACLREGRPLVSASALGLEGQL 282
V T L D PL+ GL G +
Sbjct: 129 VATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYM 164
>pdb|3I2V|A Chain A, Crystal Structure Of Human Mocs3 Rhodanese-Like Domain
Length = 127
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 16/117 (13%)
Query: 418 HTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRH------ 471
H LLDVR E + L A H + ++ AE+ L+ L+E I +
Sbjct: 18 HLLLDVRPQVEVDICRLPHALHIPLKHLERRDAES------LKLLKEAIWEEKQGTQEGA 71
Query: 472 ---VFVICRRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKYVDNRIPTY 525
++VIC+ GNDSQK V++L+ + +R++ G W +D P Y
Sbjct: 72 AVPIYVICKLGNDSQKAVKILQSLSAAQELDPL-TVRDVVGGLXAWAAKIDGTFPQY 127
>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|C Chain C, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|3KYC|A Chain A, Human Sumo E1 Complex With A Sumo1-Amp Mimic
pdb|3KYD|A Chain A, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 346
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 5/156 (3%)
Query: 126 SKDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185
S++ +Y RQI L G+ Q++L + VL+VG G G+ + L +GV L + D++
Sbjct: 12 SEEEAAQYDRQIRL--WGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHE 69
Query: 186 RVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDTSNACD-IIRRYD 244
+V + Q + T ++G+ + ++ A N N +V D + ++D
Sbjct: 70 QVTPEDPGAQFLIRTGSVGRNRAEAS--LERAQNLNPMVDVKVDTEDIEKKPESFFTQFD 127
Query: 245 VVVDACDNAPTRYLLNDACLREGRPLVSASALGLEG 280
V C + ++ C + + G G
Sbjct: 128 AVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHG 163
>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
Length = 474
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 420 LLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRRG 479
LLDVR+VDE+A L A H ++ L + D+ V V CR G
Sbjct: 392 LLDVRNVDEWAGGHLPQAHHIPLSK--------------LAAHIHDVPRDGSVCVYCRTG 437
Query: 480 NDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQ 515
S LL+ + V D+RN GY+ W+
Sbjct: 438 GRSAIAASLLRAH-------GVGDVRNXVGGYEAWR 466
>pdb|2C8S|A Chain A, Cytochrome Cl From Methylobacterium Extorquens
Length = 172
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 57/151 (37%), Gaps = 18/151 (11%)
Query: 218 INRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALG 277
+ RNT+ LD S + R V + Y+ + +CLR G L + S G
Sbjct: 11 VFRNTVTGE---ALDVSQGKEGGRDTPAVKKFLETGENLYIDDKSCLRNGESLFATSCSG 67
Query: 278 LEGQLCVYNYKGGPCYRCIYPVPPPAET-VGTC-----GDNGVLGP-----VPGVMGTLQ 326
G L K GP Y P T VG G NG++GP P M LQ
Sbjct: 68 CHGHLA--EGKLGPGLNDNYWTYPSNTTDVGLFATIFGGANGMMGPHNENLTPDEM--LQ 123
Query: 327 AVETIKLLIGLPVMDKLLVYDAELSKFLSVK 357
+ I+ L P D + + D + + K
Sbjct: 124 TIAWIRHLYTGPKQDAVWLNDEQKKAYTPYK 154
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 27/152 (17%)
Query: 391 PDISILDPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFA 450
PD++ + ++ AL YRD+ + AH L D ++ E + + A AT+ ++ +++
Sbjct: 40 PDVATM---LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG 96
Query: 451 EAGE-------CPAFLESLREDILAHRH---------VFVICRRGNDSQKVVQLLKRYVE 494
+ G+ C LE +RE +L H + ++C+ +++V +R +E
Sbjct: 97 KRGKYKEAEPLCKRALE-IREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE 155
Query: 495 RHR-------PGVVYDIRNIKEGYKGWQKYVD 519
+ P V N+ Y KY D
Sbjct: 156 IYATRLGPDDPNVAKTKNNLASCYLKQGKYQD 187
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 27/152 (17%)
Query: 391 PDISILDPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFA 450
PD++ + ++ AL YRD+ + AH L D ++ E + + A AT+ ++ +++
Sbjct: 40 PDVATM---LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG 96
Query: 451 EAGE-------CPAFLESLREDILAHRH---------VFVICRRGNDSQKVVQLLKRYVE 494
+ G+ C LE +RE +L H + ++C+ +++V +R +E
Sbjct: 97 KRGKYKEAEPLCKRALE-IREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALE 155
Query: 495 RHR-------PGVVYDIRNIKEGYKGWQKYVD 519
+ P V N+ Y KY D
Sbjct: 156 IYATRLGPDDPNVAKTKNNLASCYLKQGKYQD 187
>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|B Chain B, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|C Chain C, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|D Chain D, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
Length = 331
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Query: 147 QEKLLNASVLIVGCGGTGSPCIQYLAASGVG-TLGLADYDRVELSNLHRQVIHTTHTIGQ 205
++KL + +VG G G C + G+ L L D D +L + H + +
Sbjct: 14 EDKLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLST 73
Query: 206 PKVTSAKRF-ISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDA 249
PK+ K + +SA ++ I+ A ++ D+++R ++ A
Sbjct: 74 PKIVFGKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKA 118
>pdb|3QJ4|A Chain A, Crystal Structure Of Human Renalase (Isoform 1)
pdb|3QJ4|B Chain B, Crystal Structure Of Human Renalase (Isoform 1)
Length = 342
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVE 188
A VLIVG G TGS C L G L LA +D+ +
Sbjct: 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD 37
>pdb|4DDL|A Chain A, Pde10a Crystal Structure Complexed With Novel Inhibitor
pdb|4DDL|B Chain B, Pde10a Crystal Structure Complexed With Novel Inhibitor
Length = 338
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 279 EGQLCVYNYKGGPCYRCIYPVPPPAE-TVGTCGDN 312
+GQL YN PCY + + PP E + C DN
Sbjct: 273 QGQLGFYNAVAIPCYTTLTQILPPTEPLLKACRDN 307
>pdb|2WEY|A Chain A, Human Pde-Papaverine Complex Obtained By Ligand Soaking Of
Cross-Linked Protein Crystals
pdb|2WEY|B Chain B, Human Pde-Papaverine Complex Obtained By Ligand Soaking Of
Cross-Linked Protein Crystals
Length = 343
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 279 EGQLCVYNYKGGPCYRCIYPVPPPAE-TVGTCGDN 312
+GQL YN PCY + + PP E + C DN
Sbjct: 278 QGQLGFYNAVAIPCYTTLTQILPPTEPLLKACRDN 312
>pdb|4DFF|A Chain A, The Sar Development Of Dihydroimidazoisoquinoline
Derivatives As Phosphodiesterase 10a Inhibitors For The
Treatment Of Schizophrenia
pdb|4DFF|B Chain B, The Sar Development Of Dihydroimidazoisoquinoline
Derivatives As Phosphodiesterase 10a Inhibitors For The
Treatment Of Schizophrenia
Length = 352
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 279 EGQLCVYNYKGGPCYRCIYPVPPPAE-TVGTCGDN 312
+GQL YN PCY + + PP E + C DN
Sbjct: 287 QGQLGFYNAVAIPCYTTLTQILPPTEPLLKACRDN 321
>pdb|4AEL|A Chain A, Pde10a In Complex With The Inhibitor Az5
pdb|4AEL|B Chain B, Pde10a In Complex With The Inhibitor Az5
Length = 344
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 279 EGQLCVYNYKGGPCYRCIYPVPPPAE-TVGTCGDN 312
+GQL YN PCY + + PP E + C DN
Sbjct: 279 QGQLGFYNAVAIPCYTTLTQILPPTEPLLKACRDN 313
>pdb|3SN7|A Chain A, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SN7|B Chain B, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNI|A Chain A, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNI|B Chain B, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNL|A Chain A, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNL|B Chain B, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|4FCB|A Chain A, Potent And Selective Phosphodiesterase 10a Inhibitors
pdb|4FCB|B Chain B, Potent And Selective Phosphodiesterase 10a Inhibitors
pdb|4FCD|A Chain A, Potent And Selective Phosphodiesterase 10a Inhibitors
pdb|4FCD|B Chain B, Potent And Selective Phosphodiesterase 10a Inhibitors
Length = 345
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 279 EGQLCVYNYKGGPCYRCIYPVPPPAE-TVGTCGDN 312
+GQL YN PCY + + PP E + C DN
Sbjct: 280 QGQLGFYNAVAIPCYTTLTQILPPTEPLLKACRDN 314
>pdb|2OUR|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Camp
pdb|2OUR|B Chain B, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Camp
pdb|2OUS|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a
pdb|2OUS|B Chain B, Crystal Structure Of Pde10a2 Mutant D674a
pdb|2OUU|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Cgmp
pdb|2OUU|B Chain B, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Cgmp
Length = 331
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 279 EGQLCVYNYKGGPCYRCIYPVPPPAE-TVGTCGDN 312
+GQL YN PCY + + PP E + C DN
Sbjct: 279 QGQLGFYNAVAIPCYTTLTQILPPTEPLLKACRDN 313
>pdb|2Y0J|A Chain A, Triazoloquinazolines As A Novel Class Of Phosphodiesterase
10a (Pde10a) Inhibitors, Part 2, Lead-Optimisation.
pdb|2Y0J|B Chain B, Triazoloquinazolines As A Novel Class Of Phosphodiesterase
10a (Pde10a) Inhibitors, Part 2, Lead-Optimisation
Length = 340
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 279 EGQLCVYNYKGGPCYRCIYPVPPPAE-TVGTCGDN 312
+GQL YN PCY + + PP E + C DN
Sbjct: 283 QGQLGFYNAVAIPCYTTLTQILPPTEPLLKACRDN 317
>pdb|2OUN|A Chain A, Crystal Structure Of Pde10a2 In Complex With Amp
pdb|2OUN|B Chain B, Crystal Structure Of Pde10a2 In Complex With Amp
pdb|2OUP|A Chain A, Crystal Structure Of Pde10a
pdb|2OUP|B Chain B, Crystal Structure Of Pde10a
pdb|2OUQ|A Chain A, Crystal Structure Of Pde10a2 In Complex With Gmp
pdb|2OUQ|B Chain B, Crystal Structure Of Pde10a2 In Complex With Gmp
Length = 331
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 279 EGQLCVYNYKGGPCYRCIYPVPPPAE-TVGTCGDN 312
+GQL YN PCY + + PP E + C DN
Sbjct: 279 QGQLGFYNAVAIPCYTTLTQILPPTEPLLKACRDN 313
>pdb|2OUV|A Chain A, Crystal Structure Of Pde10a2 Mutant Of D564n
pdb|2OUV|B Chain B, Crystal Structure Of Pde10a2 Mutant Of D564n
pdb|2OUY|A Chain A, Crystal Structure Of Pde10a2 Mutant D564a In Complex With
Camp.
pdb|2OUY|B Chain B, Crystal Structure Of Pde10a2 Mutant D564a In Complex With
Camp
Length = 331
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 279 EGQLCVYNYKGGPCYRCIYPVPPPAE-TVGTCGDN 312
+GQL YN PCY + + PP E + C DN
Sbjct: 279 QGQLGFYNAVAIPCYTTLTQILPPTEPLLKACRDN 313
>pdb|4HEU|A Chain A, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
((1-(3-(4-
((1h-Benzo[d]imidazol-2-Yl)amino)phenoxy)pyridin-2-
Yl)piperidin-4- Yl)methanol)
pdb|4HEU|B Chain B, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
((1-(3-(4-
((1h-Benzo[d]imidazol-2-Yl)amino)phenoxy)pyridin-2-
Yl)piperidin-4- Yl)methanol)
pdb|4HF4|A Chain A, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
(1-(1-(3-(4-
(Benzo[d]thiazol-2-Ylamino)phenoxy)pyrazin-2-
Yl)piperidin-4-Yl) Ethanol)
pdb|4HF4|B Chain B, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
(1-(1-(3-(4-
(Benzo[d]thiazol-2-Ylamino)phenoxy)pyrazin-2-
Yl)piperidin-4-Yl) Ethanol)
Length = 318
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 279 EGQLCVYNYKGGPCYRCIYPVPPPAE-TVGTCGDN 312
+GQL YN PCY + + PP E + C DN
Sbjct: 273 QGQLGFYNAVAIPCYTTLTQILPPTEPLLKACRDN 307
>pdb|3UI7|A Chain A, Discovery Of Orally Active Pyrazoloquinoline As A Potent
Pde10 Inhibitor For The Management Of Schizophrenia
pdb|3UI7|B Chain B, Discovery Of Orally Active Pyrazoloquinoline As A Potent
Pde10 Inhibitor For The Management Of Schizophrenia
Length = 333
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 279 EGQLCVYNYKGGPCYRCIYPVPPPAE-TVGTCGDN 312
+GQL YN PCY + + PP E + C DN
Sbjct: 287 QGQLGFYNAVAIPCYTTLTQILPPTEPLLKACRDN 321
>pdb|3UUO|A Chain A, The Discovery Of Potent, Selectivity, And Orally
Bioavailable Pyrozoloquinolines As Pde10 Inhibitors For
The Treatment Of Schizophrenia
pdb|3UUO|B Chain B, The Discovery Of Potent, Selectivity, And Orally
Bioavailable Pyrozoloquinolines As Pde10 Inhibitors For
The Treatment Of Schizophrenia
Length = 337
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 279 EGQLCVYNYKGGPCYRCIYPVPPPAE-TVGTCGDN 312
+GQL YN PCY + + PP E + C DN
Sbjct: 291 QGQLGFYNAVAIPCYTTLTQILPPTEPLLKACRDN 325
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 107 GPVKVEDDCVWYGEVYSKFSKDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGG 162
GP+ D C+ + S ++ SR IL D V V+ +E+ +++ C G
Sbjct: 1 GPLGSADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSG 56
>pdb|2O8H|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat
Phosphodiesterase 10a
pdb|2OVV|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat
Phosphodiesterase 10a
pdb|2OVY|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat
Phosphodiesterase 10a
pdb|3QPN|A Chain A, Structure Of Pde10-Inhibitor Complex
pdb|3QPO|A Chain A, Structure Of Pde10-Inhibitor Complex
pdb|3QPP|A Chain A, Structure Of Pde10-Inhibitor Complex
Length = 362
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 279 EGQLCVYNYKGGPCYRCIYPVPPPAE-TVGTCGDN 312
+GQL YN PCY + + PP E + C DN
Sbjct: 292 QGQLGFYNAVAIPCYTTLTQILPPTEPLLKACRDN 326
>pdb|3HQY|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
pdb|3HQZ|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
pdb|3HR1|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
Length = 380
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 279 EGQLCVYNYKGGPCYRCIYPVPPPAE-TVGTCGDN 312
+GQL YN PCY + + PP E + C DN
Sbjct: 310 QGQLGFYNAVAIPCYTTLTQILPPTEPLLKACRDN 344
>pdb|3HQW|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
Length = 376
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 279 EGQLCVYNYKGGPCYRCIYPVPPPAE-TVGTCGDN 312
+GQL YN PCY + + PP E + C DN
Sbjct: 306 QGQLGFYNAVAIPCYTTLTQILPPTEPLLKACRDN 340
>pdb|3LXG|A Chain A, Crystal Structure Of Rat Phosphodiesterase 10a In Complex
Wi Web-3
Length = 308
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 279 EGQLCVYNYKGGPCYRCIYPVPPPAE-TVGTCGDN 312
+GQL YN PCY + + PP E + C DN
Sbjct: 262 QGQLGFYNAVAIPCYTTLTQILPPTEPLLKACRDN 296
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 9 KVAQLKEKIRQLKEDLTNAETELETILEDRAFKSRPTDGASVRDDTIRRDVSNE 62
K+A LKEKI LKE + L+ ++D + + ++++T+RR + NE
Sbjct: 4 KIAALKEKIAALKEKI----AALKEKIKDTELGMKELNEILIKEETVRRTLHNE 53
>pdb|3TUM|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of A Shikimate
Dehydrogenase Family Protein From Pseudomonas Putida
Kt2440 In Complex With Nad+
pdb|3TUM|B Chain B, 2.15 Angstrom Resolution Crystal Structure Of A Shikimate
Dehydrogenase Family Protein From Pseudomonas Putida
Kt2440 In Complex With Nad+
Length = 269
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 156 LIVGCGGTGSPCIQYLAASGVGTLGLAD 183
L++GCGG GS LA +G+ ++ L D
Sbjct: 129 LVIGCGGVGSAIAYALAEAGIASITLCD 156
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 8/116 (6%)
Query: 155 VLIVGCGGTGSPCI----QYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVT- 209
+L++G G +G I + + +G Y V SN + +I +G+ K+
Sbjct: 10 LLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDF 69
Query: 210 -SAKRFISAINRNTIVHAYQTLLDTSNACDIIRRY--DVVVDACDNAPTRYLLNDA 262
+ R A + A + T+ +I+R D V AC N YLLND+
Sbjct: 70 GDSARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYLLNDS 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,834,254
Number of Sequences: 62578
Number of extensions: 683257
Number of successful extensions: 1796
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1745
Number of HSP's gapped (non-prelim): 67
length of query: 525
length of database: 14,973,337
effective HSP length: 103
effective length of query: 422
effective length of database: 8,527,803
effective search space: 3598732866
effective search space used: 3598732866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)