Query psy13373
Match_columns 525
No_of_seqs 428 out of 3548
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 17:49:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13373.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13373hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2017|consensus 100.0 5.7E-81 1.2E-85 612.8 24.6 386 123-525 37-427 (427)
2 PRK07411 hypothetical protein; 100.0 7.4E-76 1.6E-80 616.6 39.5 377 124-525 10-390 (390)
3 PRK07878 molybdopterin biosynt 100.0 7.3E-74 1.6E-78 602.6 40.2 374 123-525 13-392 (392)
4 PRK05597 molybdopterin biosynt 100.0 3.3E-69 7.1E-74 560.1 36.8 349 127-516 3-354 (355)
5 PRK05600 thiamine biosynthesis 100.0 4.8E-69 1E-73 560.1 34.4 348 124-512 13-369 (370)
6 PRK07688 thiamine/molybdopteri 100.0 7.1E-55 1.5E-59 449.2 29.0 298 131-437 3-317 (339)
7 PRK05690 molybdopterin biosynt 100.0 1.8E-52 3.8E-57 413.9 26.8 239 124-365 4-245 (245)
8 PRK12475 thiamine/molybdopteri 100.0 4.5E-52 9.7E-57 428.2 27.6 275 131-413 3-289 (338)
9 TIGR02355 moeB molybdopterin s 100.0 3E-51 6.5E-56 403.5 25.1 235 130-367 2-240 (240)
10 PRK08762 molybdopterin biosynt 100.0 7.6E-50 1.7E-54 419.2 28.5 261 123-384 106-374 (376)
11 PRK08223 hypothetical protein; 100.0 9E-50 2E-54 397.2 25.2 227 130-359 7-265 (287)
12 PRK08328 hypothetical protein; 100.0 1.4E-48 3.1E-53 382.9 24.9 228 124-358 1-231 (231)
13 cd00757 ThiF_MoeB_HesA_family 100.0 1.1E-47 2.3E-52 376.6 24.5 226 132-358 1-228 (228)
14 TIGR02356 adenyl_thiF thiazole 100.0 4.7E-46 1E-50 358.1 19.8 201 132-334 1-202 (202)
15 COG0476 ThiF Dinucleotide-util 100.0 5.9E-44 1.3E-48 355.8 24.3 244 124-368 2-253 (254)
16 cd01492 Aos1_SUMO Ubiquitin ac 100.0 1.5E-42 3.3E-47 332.1 20.8 191 131-352 2-193 (197)
17 TIGR03603 cyclo_dehy_ocin bact 100.0 7.9E-42 1.7E-46 348.8 22.9 228 124-368 46-295 (318)
18 cd01485 E1-1_like Ubiquitin ac 100.0 1.3E-41 2.8E-46 326.1 22.0 188 132-351 1-193 (198)
19 cd01491 Ube1_repeat1 Ubiquitin 100.0 5.4E-40 1.2E-44 328.9 20.9 209 132-349 1-279 (286)
20 cd01488 Uba3_RUB Ubiquitin act 100.0 4.8E-39 1.1E-43 322.4 23.7 212 154-367 1-290 (291)
21 PRK14852 hypothetical protein; 100.0 1.2E-36 2.5E-41 340.8 21.1 225 131-358 313-568 (989)
22 PRK08644 thiamine biosynthesis 100.0 2.9E-36 6.3E-41 291.8 20.4 196 133-337 11-209 (212)
23 PRK14851 hypothetical protein; 100.0 2.5E-36 5.4E-41 334.2 22.1 231 126-359 19-280 (679)
24 cd01489 Uba2_SUMO Ubiquitin ac 100.0 2.4E-35 5.2E-40 298.8 19.1 145 154-298 1-146 (312)
25 TIGR01381 E1_like_apg7 E1-like 100.0 4.2E-35 9.2E-40 315.5 21.9 239 124-369 305-611 (664)
26 PRK07877 hypothetical protein; 100.0 5.7E-35 1.2E-39 324.0 21.7 220 117-343 72-331 (722)
27 KOG2015|consensus 100.0 2E-34 4.4E-39 281.6 19.5 226 142-369 30-336 (422)
28 cd01484 E1-2_like Ubiquitin ac 100.0 2.5E-34 5.5E-39 281.1 18.5 144 154-297 1-146 (234)
29 PRK15116 sulfur acceptor prote 100.0 1.1E-33 2.3E-38 281.0 21.7 212 124-337 4-263 (268)
30 KOG2014|consensus 100.0 1.1E-33 2.4E-38 275.2 16.3 232 123-357 4-327 (331)
31 TIGR01408 Ube1 ubiquitin-activ 100.0 3.9E-33 8.4E-38 319.6 20.8 150 129-284 3-154 (1008)
32 TIGR02354 thiF_fam2 thiamine b 100.0 1.6E-32 3.6E-37 263.2 19.4 184 142-334 11-200 (200)
33 TIGR01408 Ube1 ubiquitin-activ 100.0 5.3E-33 1.2E-37 318.5 18.4 177 130-310 399-584 (1008)
34 cd01487 E1_ThiF_like E1_ThiF_l 100.0 2.2E-32 4.7E-37 257.1 18.1 171 154-331 1-174 (174)
35 cd00755 YgdL_like Family of ac 100.0 7E-32 1.5E-36 263.7 19.7 190 142-331 1-231 (231)
36 COG1179 Dinucleotide-utilizing 100.0 6.7E-32 1.4E-36 257.1 17.7 209 127-337 7-258 (263)
37 cd01493 APPBP1_RUB Ubiquitin a 100.0 6.5E-32 1.4E-36 284.8 16.1 156 131-288 1-158 (425)
38 cd01486 Apg7 Apg7 is an E1-lik 100.0 7.1E-31 1.5E-35 261.6 21.8 215 154-369 1-277 (307)
39 KOG2013|consensus 100.0 2.1E-31 4.5E-36 272.1 12.0 153 145-297 5-158 (603)
40 cd01490 Ube1_repeat2 Ubiquitin 100.0 1.4E-30 3E-35 273.4 17.2 155 154-310 1-164 (435)
41 PF00899 ThiF: ThiF family; I 100.0 3.4E-30 7.4E-35 232.4 15.3 134 151-284 1-134 (135)
42 cd01483 E1_enzyme_family Super 100.0 1.4E-28 3E-33 224.1 15.6 133 154-286 1-133 (143)
43 KOG2336|consensus 100.0 5.4E-29 1.2E-33 239.3 12.8 233 131-367 60-317 (422)
44 KOG2012|consensus 100.0 1E-28 2.2E-33 265.5 15.8 149 130-284 17-165 (1013)
45 TIGR03736 PRTRC_ThiF PRTRC sys 100.0 4.8E-28 1E-32 237.3 16.8 204 150-358 9-243 (244)
46 PTZ00245 ubiquitin activating 100.0 4.3E-28 9.4E-33 233.2 12.2 119 125-252 1-119 (287)
47 KOG2018|consensus 99.9 1.2E-26 2.6E-31 226.4 10.9 217 132-350 56-324 (430)
48 PRK06153 hypothetical protein; 99.9 1.5E-25 3.3E-30 230.0 18.7 128 145-275 169-299 (393)
49 KOG2012|consensus 99.9 3.9E-26 8.4E-31 245.8 9.9 176 131-310 411-595 (1013)
50 TIGR03693 ocin_ThiF_like putat 99.9 2.1E-23 4.6E-28 223.1 15.5 226 123-367 96-334 (637)
51 KOG2016|consensus 99.9 3.2E-23 7E-28 210.7 8.7 155 130-286 7-163 (523)
52 cd01526 RHOD_ThiF Member of th 99.8 4.1E-21 8.8E-26 170.2 11.1 113 395-525 3-122 (122)
53 cd01533 4RHOD_Repeat_2 Member 99.8 7.8E-20 1.7E-24 158.6 11.4 102 397-517 7-108 (109)
54 cd01523 RHOD_Lact_B Member of 99.8 6.2E-20 1.3E-24 156.6 8.8 99 402-515 1-99 (100)
55 cd01518 RHOD_YceA Member of th 99.8 7.5E-20 1.6E-24 156.4 9.2 99 400-515 2-100 (101)
56 KOG2337|consensus 99.8 2.7E-19 5.9E-24 184.9 13.3 222 146-368 334-618 (669)
57 cd01528 RHOD_2 Member of the R 99.8 5.8E-19 1.3E-23 150.9 10.9 100 401-519 1-101 (101)
58 cd01534 4RHOD_Repeat_3 Member 99.8 7.9E-19 1.7E-23 148.4 10.2 93 402-515 1-94 (95)
59 PRK00162 glpE thiosulfate sulf 99.8 1.6E-18 3.6E-23 150.0 10.8 100 398-520 3-102 (108)
60 KOG1530|consensus 99.8 2.3E-18 5E-23 149.1 8.6 113 397-520 20-133 (136)
61 cd01527 RHOD_YgaP Member of th 99.8 3.3E-18 7.2E-23 145.5 9.4 94 400-517 2-95 (99)
62 cd01444 GlpE_ST GlpE sulfurtra 99.7 4.9E-18 1.1E-22 143.3 9.9 93 401-515 1-95 (96)
63 cd01524 RHOD_Pyr_redox Member 99.7 1.1E-17 2.4E-22 139.9 10.1 89 402-515 1-89 (90)
64 PLN02160 thiosulfate sulfurtra 99.7 1.2E-17 2.6E-22 150.8 10.1 110 399-520 14-125 (136)
65 cd01530 Cdc25 Cdc25 phosphatas 99.7 1.8E-17 3.9E-22 146.7 10.1 98 400-515 2-120 (121)
66 cd01520 RHOD_YbbB Member of th 99.7 2.3E-17 4.9E-22 147.5 10.7 106 402-518 1-128 (128)
67 cd01519 RHOD_HSP67B2 Member of 99.7 2.4E-17 5.2E-22 141.8 10.4 102 403-515 2-105 (106)
68 cd01522 RHOD_1 Member of the R 99.7 1.1E-17 2.4E-22 147.1 8.3 103 402-516 1-104 (117)
69 cd01525 RHOD_Kc Member of the 99.7 2.1E-17 4.6E-22 141.9 9.3 103 402-515 1-104 (105)
70 PRK01415 hypothetical protein; 99.7 5.8E-17 1.3E-21 159.2 12.0 106 398-520 110-215 (247)
71 cd01529 4RHOD_Repeats Member o 99.7 5.8E-17 1.3E-21 137.2 8.9 89 412-515 6-95 (96)
72 cd01521 RHOD_PspE2 Member of t 99.7 9.6E-17 2.1E-21 139.5 10.3 96 400-517 8-106 (110)
73 PRK05320 rhodanese superfamily 99.7 9.5E-17 2.1E-21 159.7 11.6 108 397-520 107-219 (257)
74 cd01531 Acr2p Eukaryotic arsen 99.7 8.3E-17 1.8E-21 140.5 9.8 99 400-517 2-112 (113)
75 cd01447 Polysulfide_ST Polysul 99.7 5.9E-17 1.3E-21 138.4 8.4 101 402-517 1-102 (103)
76 PF00581 Rhodanese: Rhodanese- 99.7 2E-16 4.3E-21 136.7 10.8 104 403-517 1-113 (113)
77 COG0607 PspE Rhodanese-related 99.7 1.3E-16 2.8E-21 137.7 8.9 94 412-524 15-109 (110)
78 cd01449 TST_Repeat_2 Thiosulfa 99.7 2.2E-16 4.7E-21 138.5 8.9 104 402-515 1-117 (118)
79 cd01532 4RHOD_Repeat_1 Member 99.7 2.4E-16 5.3E-21 132.5 8.7 82 416-516 9-92 (92)
80 TIGR02981 phageshock_pspE phag 99.7 3.3E-16 7.3E-21 134.0 9.5 79 417-515 18-96 (101)
81 cd01448 TST_Repeat_1 Thiosulfa 99.7 4.2E-16 9.2E-21 137.7 9.8 107 402-517 2-121 (122)
82 cd01443 Cdc25_Acr2p Cdc25 enzy 99.6 5.3E-16 1.1E-20 135.5 9.4 97 400-515 2-112 (113)
83 cd01535 4RHOD_Repeat_4 Member 99.6 7E-16 1.5E-20 140.8 10.5 92 407-520 2-93 (145)
84 PRK00142 putative rhodanese-re 99.6 8.4E-16 1.8E-20 157.2 11.6 108 397-521 109-216 (314)
85 smart00450 RHOD Rhodanese Homo 99.6 6.7E-16 1.5E-20 129.6 8.4 96 416-519 3-99 (100)
86 PRK10287 thiosulfate:cyanide s 99.6 1.1E-15 2.3E-20 131.5 9.6 79 417-515 20-98 (104)
87 TIGR03865 PQQ_CXXCW PQQ-depend 99.6 2E-15 4.3E-20 140.4 10.4 111 397-518 33-159 (162)
88 cd00158 RHOD Rhodanese Homolog 99.6 2.1E-15 4.5E-20 124.5 8.7 88 407-515 2-89 (89)
89 PF05237 MoeZ_MoeB: MoeZ/MoeB 99.6 2.5E-15 5.4E-20 124.2 6.1 77 289-368 2-81 (84)
90 PRK08762 molybdopterin biosynt 99.6 1.3E-14 2.8E-19 152.8 10.9 99 399-519 2-100 (376)
91 PLN02723 3-mercaptopyruvate su 99.5 3.4E-14 7.4E-19 146.3 10.3 112 401-524 191-315 (320)
92 cd01445 TST_Repeats Thiosulfat 99.5 1.2E-13 2.7E-18 125.0 10.5 106 402-515 1-137 (138)
93 COG2897 SseA Rhodanese-related 99.5 9.2E-14 2E-18 139.1 10.1 114 399-524 155-280 (285)
94 TIGR03167 tRNA_sel_U_synt tRNA 99.5 7E-14 1.5E-18 142.6 9.4 97 417-521 2-119 (311)
95 PRK11493 sseA 3-mercaptopyruva 99.5 1.4E-13 3.1E-18 139.3 9.1 110 402-524 155-277 (281)
96 PRK11784 tRNA 2-selenouridine 99.4 3.5E-13 7.6E-18 139.4 11.0 106 403-519 4-131 (345)
97 PRK09629 bifunctional thiosulf 99.4 3E-13 6.4E-18 149.8 10.9 112 400-523 147-268 (610)
98 cd01446 DSP_MapKP N-terminal r 99.4 5.5E-13 1.2E-17 119.6 10.6 106 402-517 2-127 (132)
99 PRK11493 sseA 3-mercaptopyruva 99.4 7.5E-13 1.6E-17 134.0 9.7 109 400-517 5-129 (281)
100 PRK09629 bifunctional thiosulf 99.4 1.5E-12 3.2E-17 144.3 9.9 112 400-520 9-126 (610)
101 COG1054 Predicted sulfurtransf 99.3 1.2E-11 2.5E-16 122.2 14.0 194 252-520 19-216 (308)
102 PLN02723 3-mercaptopyruvate su 99.3 5E-12 1.1E-16 130.3 9.9 110 400-518 22-146 (320)
103 PRK01269 tRNA s(4)U8 sulfurtra 99.1 2E-10 4.2E-15 124.8 9.3 72 416-508 406-481 (482)
104 cd01764 Urm1 Urm1-like ubuitin 99.0 1.4E-10 3E-15 97.7 3.4 66 15-98 29-94 (94)
105 KOG3772|consensus 98.8 9.3E-09 2E-13 103.4 7.4 107 397-518 153-277 (325)
106 COG4015 Predicted dinucleotide 98.8 8.4E-08 1.8E-12 86.7 11.9 179 150-336 16-212 (217)
107 COG2897 SseA Rhodanese-related 98.6 1.6E-07 3.4E-12 94.5 10.4 115 398-520 9-135 (285)
108 KOG1529|consensus 98.3 1.3E-06 2.9E-11 86.3 6.9 95 417-521 172-279 (286)
109 TIGR01687 moaD_arch MoaD famil 98.2 1.2E-06 2.5E-11 73.0 3.3 64 15-98 25-88 (88)
110 TIGR03882 cyclo_dehyd_2 bacter 98.1 1.4E-05 3E-10 76.5 9.0 95 143-296 96-193 (193)
111 PRK12549 shikimate 5-dehydroge 97.9 3.7E-05 7.9E-10 78.1 8.7 77 150-251 125-201 (284)
112 PF01488 Shikimate_DH: Shikima 97.9 3.8E-05 8.3E-10 69.2 7.1 78 149-253 9-86 (135)
113 COG1748 LYS9 Saccharopine dehy 97.8 0.00013 2.8E-09 76.7 11.0 99 153-277 2-102 (389)
114 PRK06718 precorrin-2 dehydroge 97.6 0.00053 1.1E-08 66.2 11.4 92 150-272 8-99 (202)
115 TIGR01470 cysG_Nterm siroheme 97.4 0.0014 3E-08 63.4 11.6 96 150-275 7-102 (205)
116 COG5105 MIH1 Mitotic inducer, 97.4 0.0005 1.1E-08 68.8 7.6 106 397-515 239-356 (427)
117 PF13241 NAD_binding_7: Putati 97.3 0.0003 6.5E-09 60.3 5.1 89 149-274 4-92 (103)
118 KOG1529|consensus 97.3 0.00073 1.6E-08 67.2 7.4 110 402-520 7-133 (286)
119 PRK14027 quinate/shikimate deh 97.2 0.0011 2.3E-08 67.4 8.4 79 150-251 125-203 (283)
120 PF03435 Saccharop_dh: Sacchar 97.2 0.0013 2.8E-08 69.6 8.8 95 155-273 1-97 (386)
121 PRK06719 precorrin-2 dehydroge 97.1 0.004 8.8E-08 57.6 10.6 85 149-266 10-94 (157)
122 PRK12548 shikimate 5-dehydroge 97.0 0.0023 4.9E-08 65.2 8.8 84 150-251 124-208 (289)
123 PRK05562 precorrin-2 dehydroge 96.9 0.0083 1.8E-07 58.6 11.2 97 149-275 22-118 (223)
124 TIGR01809 Shik-DH-AROM shikima 96.9 0.0021 4.6E-08 65.2 7.3 78 150-252 123-200 (282)
125 PRK12749 quinate/shikimate deh 96.7 0.0053 1.2E-07 62.5 8.3 83 150-251 122-205 (288)
126 COG0169 AroE Shikimate 5-dehyd 96.7 0.0044 9.5E-08 62.8 7.4 175 29-251 22-199 (283)
127 PRK00258 aroE shikimate 5-dehy 96.7 0.0039 8.4E-08 63.1 6.8 75 150-252 121-195 (278)
128 COG0373 HemA Glutamyl-tRNA red 96.6 0.0033 7.2E-08 66.6 6.2 76 149-254 175-250 (414)
129 cd00754 MoaD Ubiquitin domain 96.6 0.0011 2.3E-08 53.8 1.6 55 15-98 26-80 (80)
130 PRK13940 glutamyl-tRNA reducta 96.5 0.0043 9.2E-08 66.4 6.4 77 149-254 178-254 (414)
131 cd01065 NAD_bind_Shikimate_DH 96.5 0.0058 1.3E-07 55.7 6.0 36 150-185 17-52 (155)
132 cd01080 NAD_bind_m-THF_DH_Cycl 96.4 0.0069 1.5E-07 56.7 6.3 58 149-254 41-99 (168)
133 COG2603 Predicted ATPase [Gene 96.4 0.0038 8.3E-08 62.1 4.7 92 417-516 15-128 (334)
134 COG0569 TrkA K+ transport syst 96.3 0.03 6.5E-07 55.0 10.6 97 153-275 1-100 (225)
135 cd05213 NAD_bind_Glutamyl_tRNA 96.3 0.013 2.8E-07 60.3 8.4 83 150-262 176-258 (311)
136 PF02597 ThiS: ThiS family; I 96.3 0.0014 3.1E-08 52.5 0.9 55 16-98 23-77 (77)
137 PRK14106 murD UDP-N-acetylmura 96.3 0.015 3.2E-07 62.8 8.9 95 150-272 3-97 (450)
138 TIGR01035 hemA glutamyl-tRNA r 96.2 0.014 3E-07 62.7 8.1 75 150-254 178-252 (417)
139 PF03807 F420_oxidored: NADP o 96.1 0.024 5.1E-07 47.3 7.6 89 154-273 1-93 (96)
140 PRK04148 hypothetical protein; 96.1 0.086 1.9E-06 47.4 11.2 97 151-277 16-112 (134)
141 PF01113 DapB_N: Dihydrodipico 96.1 0.042 9E-07 48.7 9.1 96 154-275 2-99 (124)
142 cd05291 HicDH_like L-2-hydroxy 96.0 0.021 4.7E-07 58.6 8.1 76 153-253 1-79 (306)
143 cd05311 NAD_bind_2_malic_enz N 96.0 0.011 2.3E-07 58.2 5.5 38 149-186 22-61 (226)
144 PF01210 NAD_Gly3P_dh_N: NAD-d 95.9 0.016 3.4E-07 53.5 6.0 100 154-273 1-102 (157)
145 cd01078 NAD_bind_H4MPT_DH NADP 95.9 0.035 7.6E-07 52.8 8.5 84 149-254 25-109 (194)
146 PRK10637 cysG siroheme synthas 95.9 0.06 1.3E-06 58.5 11.1 95 149-273 9-103 (457)
147 COG1086 Predicted nucleoside-d 95.8 0.043 9.3E-07 59.9 9.7 85 146-249 244-332 (588)
148 PRK11130 moaD molybdopterin sy 95.8 0.0062 1.4E-07 49.8 2.5 56 15-98 26-81 (81)
149 PF00056 Ldh_1_N: lactate/mala 95.8 0.024 5.2E-07 51.5 6.4 76 154-252 2-79 (141)
150 cd01075 NAD_bind_Leu_Phe_Val_D 95.7 0.043 9.2E-07 52.9 8.2 36 149-185 25-60 (200)
151 PLN02819 lysine-ketoglutarate 95.7 0.072 1.6E-06 62.9 11.3 98 151-274 568-679 (1042)
152 TIGR01682 moaD molybdopterin c 95.6 0.0079 1.7E-07 48.9 2.4 54 15-98 27-80 (80)
153 COG1648 CysG Siroheme synthase 95.5 0.041 8.8E-07 53.4 7.1 96 149-274 9-104 (210)
154 COG1977 MoaD Molybdopterin con 95.4 0.019 4.1E-07 47.4 4.0 60 12-98 25-84 (84)
155 PF04273 DUF442: Putative phos 95.4 0.037 7.9E-07 48.1 5.8 79 400-490 13-107 (110)
156 PRK15469 ghrA bifunctional gly 95.4 0.051 1.1E-06 56.0 7.8 91 148-274 132-226 (312)
157 PTZ00082 L-lactate dehydrogena 95.3 0.022 4.8E-07 58.9 5.1 37 150-186 4-40 (321)
158 PLN00203 glutamyl-tRNA reducta 95.3 0.046 1E-06 60.1 7.8 78 150-254 264-341 (519)
159 PRK05476 S-adenosyl-L-homocyst 95.3 0.039 8.5E-07 59.1 6.9 36 150-186 210-245 (425)
160 PRK14619 NAD(P)H-dependent gly 95.3 0.077 1.7E-06 54.5 8.8 33 152-185 4-36 (308)
161 PF01118 Semialdhyde_dh: Semia 95.3 0.098 2.1E-06 45.9 8.3 94 154-274 1-97 (121)
162 PRK08618 ornithine cyclodeamin 95.2 0.086 1.9E-06 54.6 9.1 96 151-275 126-222 (325)
163 TIGR01244 conserved hypothetic 95.1 0.045 9.8E-07 49.2 5.8 82 400-489 13-106 (135)
164 PRK00045 hemA glutamyl-tRNA re 95.1 0.038 8.3E-07 59.4 6.2 75 150-254 180-254 (423)
165 PTZ00117 malate dehydrogenase; 95.1 0.033 7.1E-07 57.6 5.5 36 150-185 3-38 (319)
166 PRK00066 ldh L-lactate dehydro 95.0 0.087 1.9E-06 54.4 8.5 77 151-252 5-83 (315)
167 PRK13403 ketol-acid reductoiso 95.0 0.11 2.3E-06 53.5 8.7 80 147-261 11-90 (335)
168 cd05211 NAD_bind_Glu_Leu_Phe_V 94.9 0.12 2.6E-06 50.5 8.7 38 149-186 20-57 (217)
169 cd00401 AdoHcyase S-adenosyl-L 94.9 0.14 3E-06 54.7 9.8 36 150-186 200-235 (413)
170 PRK07574 formate dehydrogenase 94.9 0.18 4E-06 53.4 10.5 93 148-274 188-284 (385)
171 PF02254 TrkA_N: TrkA-N domain 94.9 0.42 9.2E-06 41.0 11.2 91 155-273 1-94 (116)
172 PF03949 Malic_M: Malic enzyme 94.9 0.08 1.7E-06 52.7 7.2 104 148-273 21-139 (255)
173 PLN02799 Molybdopterin synthas 94.8 0.017 3.6E-07 47.3 1.9 53 16-98 30-82 (82)
174 cd05290 LDH_3 A subgroup of L- 94.8 0.13 2.9E-06 52.8 8.9 74 154-252 1-78 (307)
175 cd05312 NAD_bind_1_malic_enz N 94.8 0.17 3.8E-06 51.0 9.4 104 148-273 21-138 (279)
176 TIGR02992 ectoine_eutC ectoine 94.7 0.13 2.9E-06 53.3 8.9 75 152-252 129-204 (326)
177 PRK06141 ornithine cyclodeamin 94.7 0.12 2.6E-06 53.3 8.5 78 149-253 122-200 (314)
178 PRK00048 dihydrodipicolinate r 94.7 0.26 5.5E-06 49.4 10.5 91 153-278 2-94 (257)
179 PRK14192 bifunctional 5,10-met 94.6 0.074 1.6E-06 54.0 6.4 34 149-183 156-190 (283)
180 PF02719 Polysacc_synt_2: Poly 94.6 0.073 1.6E-06 54.1 6.3 78 155-251 1-86 (293)
181 PRK07634 pyrroline-5-carboxyla 94.5 0.33 7.1E-06 47.8 10.8 82 151-263 3-87 (245)
182 PRK00676 hemA glutamyl-tRNA re 94.5 0.071 1.5E-06 55.3 6.2 36 149-184 171-206 (338)
183 KOG4169|consensus 94.5 0.093 2E-06 51.1 6.5 79 150-249 3-90 (261)
184 cd00300 LDH_like L-lactate deh 94.5 0.13 2.9E-06 52.6 8.2 72 155-252 1-76 (300)
185 PRK05808 3-hydroxybutyryl-CoA 94.5 0.047 1E-06 55.2 4.7 33 153-186 4-36 (282)
186 TIGR00872 gnd_rel 6-phosphoglu 94.5 0.076 1.6E-06 54.3 6.3 115 154-277 2-121 (298)
187 PF10727 Rossmann-like: Rossma 94.4 0.14 3.1E-06 45.6 7.0 83 151-265 9-91 (127)
188 PRK00094 gpsA NAD(P)H-dependen 94.3 0.15 3.1E-06 52.4 8.1 100 154-273 3-104 (325)
189 PRK05479 ketol-acid reductoiso 94.3 0.21 4.6E-06 51.8 9.1 78 148-259 13-90 (330)
190 cd05191 NAD_bind_amino_acid_DH 94.3 0.057 1.2E-06 44.5 4.1 36 149-184 20-55 (86)
191 cd05293 LDH_1 A subgroup of L- 94.3 0.11 2.3E-06 53.7 6.8 75 152-252 3-81 (312)
192 PRK08293 3-hydroxybutyryl-CoA 94.3 0.14 3.1E-06 51.9 7.7 33 153-186 4-36 (287)
193 PRK06130 3-hydroxybutyryl-CoA 94.2 0.18 4E-06 51.6 8.6 33 153-186 5-37 (311)
194 PRK07340 ornithine cyclodeamin 94.2 0.15 3.3E-06 52.3 7.9 76 150-253 123-199 (304)
195 PRK09496 trkA potassium transp 94.2 0.3 6.4E-06 52.7 10.6 96 150-271 229-326 (453)
196 TIGR00518 alaDH alanine dehydr 94.2 0.097 2.1E-06 55.3 6.5 35 150-185 165-199 (370)
197 TIGR02853 spore_dpaA dipicolin 94.2 0.062 1.4E-06 54.7 4.9 35 149-184 148-182 (287)
198 PRK06522 2-dehydropantoate 2-r 94.2 0.36 7.8E-06 48.9 10.5 31 154-185 2-32 (304)
199 PRK06932 glycerate dehydrogena 94.1 0.1 2.2E-06 53.9 6.4 87 148-274 143-233 (314)
200 PRK07066 3-hydroxybutyryl-CoA 94.1 0.14 3.1E-06 52.9 7.4 33 153-186 8-40 (321)
201 TIGR01915 npdG NADPH-dependent 94.1 0.31 6.8E-06 47.4 9.5 85 154-263 2-89 (219)
202 TIGR00936 ahcY adenosylhomocys 94.1 0.29 6.3E-06 52.2 9.9 36 150-186 193-228 (406)
203 PRK11880 pyrroline-5-carboxyla 94.1 0.28 6E-06 49.1 9.4 89 153-273 3-93 (267)
204 PRK07679 pyrroline-5-carboxyla 94.1 0.26 5.6E-06 49.8 9.2 92 151-273 2-98 (279)
205 PRK06035 3-hydroxyacyl-CoA deh 94.1 0.15 3.3E-06 51.8 7.5 33 153-186 4-36 (291)
206 PLN02350 phosphogluconate dehy 94.0 0.32 6.9E-06 53.3 10.2 121 153-278 7-136 (493)
207 TIGR00507 aroE shikimate 5-deh 94.0 0.21 4.6E-06 50.2 8.3 34 150-184 115-148 (270)
208 PRK06223 malate dehydrogenase; 93.9 0.093 2E-06 53.8 5.7 32 153-184 3-34 (307)
209 PRK06197 short chain dehydroge 93.8 0.2 4.4E-06 50.9 8.0 42 142-184 6-48 (306)
210 PRK01438 murD UDP-N-acetylmura 93.8 0.21 4.6E-06 54.4 8.6 35 150-185 14-48 (480)
211 PRK09599 6-phosphogluconate de 93.8 0.16 3.5E-06 51.9 7.2 116 154-278 2-123 (301)
212 cd00762 NAD_bind_malic_enz NAD 93.8 0.26 5.5E-06 49.1 8.2 105 148-273 21-139 (254)
213 PRK12480 D-lactate dehydrogena 93.8 0.36 7.8E-06 50.2 9.7 89 148-274 142-234 (330)
214 PF02826 2-Hacid_dh_C: D-isome 93.7 0.039 8.5E-07 52.0 2.3 40 146-186 30-69 (178)
215 PRK08306 dipicolinate synthase 93.7 0.18 3.9E-06 51.6 7.2 35 150-185 150-184 (296)
216 TIGR00873 gnd 6-phosphoglucona 93.7 0.17 3.6E-06 55.2 7.3 119 154-278 1-127 (467)
217 PRK09260 3-hydroxybutyryl-CoA 93.7 0.23 5E-06 50.4 8.0 33 153-186 2-34 (288)
218 PF13460 NAD_binding_10: NADH( 93.7 0.77 1.7E-05 42.6 11.0 93 155-277 1-100 (183)
219 PRK12490 6-phosphogluconate de 93.6 0.19 4.1E-06 51.4 7.3 116 154-278 2-123 (299)
220 PRK08291 ectoine utilization p 93.6 0.3 6.5E-06 50.7 8.9 75 152-252 132-207 (330)
221 PRK07502 cyclohexadienyl dehyd 93.6 0.49 1.1E-05 48.5 10.3 34 152-185 6-40 (307)
222 PRK07530 3-hydroxybutyryl-CoA 93.6 0.18 3.8E-06 51.3 7.0 33 152-185 4-36 (292)
223 PLN02494 adenosylhomocysteinas 93.6 0.12 2.6E-06 55.8 6.0 36 150-186 252-287 (477)
224 PRK09242 tropinone reductase; 93.6 0.42 9.1E-06 47.0 9.5 64 150-233 7-71 (257)
225 PTZ00142 6-phosphogluconate de 93.6 0.16 3.4E-06 55.4 6.9 121 153-278 2-130 (470)
226 PLN02602 lactate dehydrogenase 93.5 0.27 6E-06 51.4 8.3 74 153-252 38-115 (350)
227 PRK07062 short chain dehydroge 93.5 0.47 1E-05 46.9 9.7 64 150-233 6-70 (265)
228 PRK07819 3-hydroxybutyryl-CoA 93.5 0.043 9.3E-07 55.8 2.2 33 153-186 6-38 (286)
229 PRK09496 trkA potassium transp 93.4 0.5 1.1E-05 50.9 10.5 93 154-273 2-97 (453)
230 PRK05854 short chain dehydroge 93.4 0.41 8.8E-06 49.1 9.3 64 150-233 12-76 (313)
231 PRK07680 late competence prote 93.4 0.58 1.3E-05 47.1 10.2 79 154-263 2-83 (273)
232 PRK13304 L-aspartate dehydroge 93.4 0.56 1.2E-05 47.1 10.0 88 154-274 3-92 (265)
233 PRK14618 NAD(P)H-dependent gly 93.3 0.27 5.8E-06 50.9 7.9 32 153-185 5-36 (328)
234 PRK08410 2-hydroxyacid dehydro 93.3 0.11 2.5E-06 53.4 5.1 36 148-184 141-176 (311)
235 KOG0069|consensus 93.3 0.22 4.9E-06 51.5 7.1 93 147-274 157-253 (336)
236 COG1893 ApbA Ketopantoate redu 93.3 0.44 9.5E-06 49.0 9.2 86 153-265 1-90 (307)
237 PLN02427 UDP-apiose/xylose syn 93.2 0.47 1E-05 50.0 9.8 113 148-280 10-141 (386)
238 PRK13302 putative L-aspartate 93.2 0.69 1.5E-05 46.7 10.5 91 150-272 4-96 (271)
239 PF00070 Pyr_redox: Pyridine n 93.2 0.13 2.7E-06 41.6 4.2 58 154-225 1-58 (80)
240 COG0240 GpsA Glycerol-3-phosph 93.2 0.36 7.7E-06 49.8 8.4 99 153-273 2-104 (329)
241 PRK02705 murD UDP-N-acetylmura 93.2 0.45 9.7E-06 51.5 9.8 97 153-272 1-97 (459)
242 PRK11908 NAD-dependent epimera 93.2 0.86 1.9E-05 47.2 11.5 102 153-280 2-123 (347)
243 PRK07063 short chain dehydroge 93.2 0.48 1E-05 46.7 9.2 65 149-233 4-69 (260)
244 PRK11199 tyrA bifunctional cho 93.1 0.42 9.1E-06 50.6 9.1 32 153-185 99-131 (374)
245 PRK06476 pyrroline-5-carboxyla 93.1 0.56 1.2E-05 46.7 9.6 88 154-272 2-91 (258)
246 PTZ00345 glycerol-3-phosphate 93.1 0.31 6.6E-06 51.4 8.0 105 151-273 10-128 (365)
247 PRK12826 3-ketoacyl-(acyl-carr 93.1 0.32 7E-06 47.3 7.8 36 149-185 3-39 (251)
248 PTZ00075 Adenosylhomocysteinas 93.0 0.14 3E-06 55.5 5.3 37 149-186 251-287 (476)
249 PLN02240 UDP-glucose 4-epimera 93.0 1 2.2E-05 46.6 11.7 33 150-183 3-36 (352)
250 PF02558 ApbA: Ketopantoate re 93.0 0.13 2.9E-06 46.5 4.5 88 155-263 1-88 (151)
251 PLN03209 translocon at the inn 93.0 0.87 1.9E-05 50.6 11.5 84 148-251 76-168 (576)
252 PLN03139 formate dehydrogenase 93.0 0.33 7.1E-06 51.5 8.0 93 148-274 195-291 (386)
253 PRK08229 2-dehydropantoate 2-r 92.9 0.35 7.5E-06 50.2 8.1 32 153-185 3-34 (341)
254 PRK06928 pyrroline-5-carboxyla 92.9 0.87 1.9E-05 46.0 10.7 90 154-273 3-97 (277)
255 PF03446 NAD_binding_2: NAD bi 92.9 0.06 1.3E-06 49.9 2.1 115 153-278 2-123 (163)
256 PRK05875 short chain dehydroge 92.9 0.45 9.7E-06 47.4 8.5 35 149-184 4-39 (276)
257 PRK15181 Vi polysaccharide bio 92.8 0.63 1.4E-05 48.4 9.9 36 149-185 12-48 (348)
258 TIGR00465 ilvC ketol-acid redu 92.8 0.97 2.1E-05 46.7 11.0 31 150-181 1-31 (314)
259 TIGR03589 PseB UDP-N-acetylglu 92.8 1.2 2.6E-05 45.8 11.8 36 150-185 2-39 (324)
260 PRK07831 short chain dehydroge 92.7 0.66 1.4E-05 45.8 9.5 34 150-184 15-50 (262)
261 PRK07417 arogenate dehydrogena 92.7 0.54 1.2E-05 47.5 8.9 31 154-185 2-32 (279)
262 COG0111 SerA Phosphoglycerate 92.7 0.16 3.6E-06 52.5 5.2 91 149-274 139-233 (324)
263 COG1052 LdhA Lactate dehydroge 92.7 0.28 6E-06 50.9 6.8 104 133-273 121-235 (324)
264 PRK01710 murD UDP-N-acetylmura 92.7 0.3 6.5E-06 53.0 7.4 36 150-186 12-47 (458)
265 PRK07531 bifunctional 3-hydrox 92.6 0.71 1.5E-05 50.7 10.3 33 153-186 5-37 (495)
266 PTZ00431 pyrroline carboxylate 92.5 0.55 1.2E-05 47.0 8.6 74 151-263 2-78 (260)
267 TIGR03026 NDP-sugDHase nucleot 92.5 0.68 1.5E-05 49.5 9.8 40 154-194 2-41 (411)
268 PTZ00325 malate dehydrogenase; 92.4 0.32 6.8E-06 50.4 6.8 35 150-184 6-42 (321)
269 PRK07576 short chain dehydroge 92.3 0.33 7.1E-06 48.2 6.7 39 146-185 3-42 (264)
270 PRK12491 pyrroline-5-carboxyla 92.3 1 2.2E-05 45.5 10.2 90 152-273 2-96 (272)
271 PLN02688 pyrroline-5-carboxyla 92.3 0.91 2E-05 45.3 9.9 77 154-263 2-82 (266)
272 PRK14175 bifunctional 5,10-met 92.3 0.37 8E-06 49.0 7.0 77 149-276 155-232 (286)
273 COG1712 Predicted dinucleotide 92.3 0.67 1.4E-05 45.1 8.3 90 154-276 2-93 (255)
274 PRK07231 fabG 3-ketoacyl-(acyl 92.3 0.66 1.4E-05 45.1 8.7 35 150-185 3-38 (251)
275 PRK06270 homoserine dehydrogen 92.3 0.78 1.7E-05 47.9 9.7 22 153-174 3-24 (341)
276 TIGR00036 dapB dihydrodipicoli 92.3 0.86 1.9E-05 45.8 9.7 95 154-275 3-100 (266)
277 PF00106 adh_short: short chai 92.3 0.72 1.6E-05 41.9 8.5 82 153-253 1-91 (167)
278 PRK12769 putative oxidoreducta 92.3 0.7 1.5E-05 52.6 10.0 96 151-253 326-423 (654)
279 PRK03562 glutathione-regulated 92.2 0.55 1.2E-05 53.1 9.0 87 152-266 400-488 (621)
280 cd01076 NAD_bind_1_Glu_DH NAD( 92.2 0.64 1.4E-05 45.7 8.4 38 148-185 27-64 (227)
281 PRK13301 putative L-aspartate 92.2 0.36 7.7E-06 48.4 6.6 109 152-270 2-117 (267)
282 PRK12550 shikimate 5-dehydroge 92.2 0.17 3.7E-06 51.1 4.4 34 152-185 122-155 (272)
283 PLN00106 malate dehydrogenase 92.1 0.63 1.4E-05 48.2 8.6 36 151-186 17-54 (323)
284 PRK08374 homoserine dehydrogen 92.1 0.94 2E-05 47.2 10.0 107 153-275 3-123 (336)
285 TIGR01505 tartro_sem_red 2-hyd 91.8 0.62 1.3E-05 47.3 8.2 31 154-185 1-31 (291)
286 TIGR01763 MalateDH_bact malate 91.8 0.29 6.3E-06 50.3 5.7 32 153-184 2-33 (305)
287 TIGR03376 glycerol3P_DH glycer 91.8 0.67 1.5E-05 48.4 8.4 102 154-273 1-115 (342)
288 cd01339 LDH-like_MDH L-lactate 91.8 0.2 4.4E-06 51.2 4.6 31 155-185 1-31 (300)
289 TIGR01181 dTDP_gluc_dehyt dTDP 91.8 1.4 3.1E-05 44.2 10.8 31 154-184 1-33 (317)
290 TIGR02622 CDP_4_6_dhtase CDP-g 91.7 1.3 2.9E-05 45.9 10.6 35 150-185 2-37 (349)
291 PRK06545 prephenate dehydrogen 91.7 0.74 1.6E-05 48.4 8.7 33 153-186 1-33 (359)
292 PRK08125 bifunctional UDP-gluc 91.7 1.4 3.1E-05 50.1 11.7 109 146-280 309-437 (660)
293 PRK03659 glutathione-regulated 91.6 0.71 1.5E-05 52.0 9.0 88 152-267 400-489 (601)
294 PRK07523 gluconate 5-dehydroge 91.4 1 2.2E-05 44.3 8.9 35 149-184 7-42 (255)
295 PRK05225 ketol-acid reductoiso 91.4 0.85 1.8E-05 49.1 8.7 42 136-179 18-63 (487)
296 PRK02006 murD UDP-N-acetylmura 91.3 0.74 1.6E-05 50.5 8.6 35 150-185 5-39 (498)
297 TIGR01202 bchC 2-desacetyl-2-h 91.3 0.59 1.3E-05 47.7 7.4 34 151-184 144-177 (308)
298 PLN02306 hydroxypyruvate reduc 91.3 0.79 1.7E-05 48.7 8.5 106 148-274 161-272 (386)
299 PRK04308 murD UDP-N-acetylmura 91.3 0.9 2E-05 49.0 9.2 36 150-186 3-38 (445)
300 PLN02206 UDP-glucuronate decar 91.3 0.81 1.8E-05 49.5 8.8 34 150-184 117-151 (442)
301 cd00650 LDH_MDH_like NAD-depen 91.3 0.43 9.4E-06 47.8 6.2 72 155-251 1-79 (263)
302 COG0300 DltE Short-chain dehyd 91.2 1.1 2.5E-05 44.9 9.0 80 150-250 4-92 (265)
303 PRK08251 short chain dehydroge 91.2 1.3 2.8E-05 43.2 9.4 79 152-250 2-89 (248)
304 PRK12439 NAD(P)H-dependent gly 91.2 0.72 1.6E-05 48.1 8.0 101 153-273 8-110 (341)
305 COG0281 SfcA Malic enzyme [Ene 91.1 0.56 1.2E-05 49.6 7.0 99 148-273 195-298 (432)
306 PRK14620 NAD(P)H-dependent gly 91.1 0.98 2.1E-05 46.6 8.9 32 154-186 2-33 (326)
307 PRK08818 prephenate dehydrogen 91.1 0.92 2E-05 47.9 8.6 35 150-184 2-37 (370)
308 PRK11064 wecC UDP-N-acetyl-D-m 91.0 1.1 2.4E-05 48.1 9.3 42 152-194 3-44 (415)
309 PF00670 AdoHcyase_NAD: S-aden 90.9 0.86 1.9E-05 42.3 7.2 38 148-186 19-56 (162)
310 COG0771 MurD UDP-N-acetylmuram 90.9 0.5 1.1E-05 51.0 6.5 38 150-188 5-42 (448)
311 PRK05866 short chain dehydroge 90.9 1.1 2.4E-05 45.4 8.8 35 149-184 37-72 (293)
312 PRK08217 fabG 3-ketoacyl-(acyl 90.8 0.91 2E-05 44.1 8.0 34 150-184 3-37 (253)
313 PRK05867 short chain dehydroge 90.8 1.2 2.7E-05 43.6 8.9 33 150-183 7-40 (253)
314 COG1063 Tdh Threonine dehydrog 90.7 1.5 3.2E-05 46.0 9.8 95 152-270 169-266 (350)
315 PRK02472 murD UDP-N-acetylmura 90.7 0.66 1.4E-05 50.0 7.4 35 150-185 3-37 (447)
316 PRK09186 flagellin modificatio 90.7 1.3 2.8E-05 43.3 8.9 33 150-183 2-35 (256)
317 PRK07478 short chain dehydroge 90.7 1.1 2.4E-05 43.8 8.5 35 149-184 3-38 (254)
318 PRK12779 putative bifunctional 90.6 1.3 2.9E-05 52.4 10.4 96 151-252 305-402 (944)
319 cd05296 GH4_P_beta_glucosidase 90.6 0.6 1.3E-05 50.2 6.8 107 154-282 2-115 (419)
320 PRK06194 hypothetical protein; 90.6 0.97 2.1E-05 45.2 8.1 35 149-184 3-38 (287)
321 PF01408 GFO_IDH_MocA: Oxidore 90.5 1.4 3E-05 38.0 8.0 86 154-272 2-91 (120)
322 cd01493 APPBP1_RUB Ubiquitin a 90.5 0.29 6.4E-06 52.6 4.4 40 316-355 384-424 (425)
323 PRK06125 short chain dehydroge 90.5 1.4 3.1E-05 43.3 9.0 35 150-185 5-40 (259)
324 PRK08339 short chain dehydroge 90.4 1.4 3.1E-05 43.7 9.0 34 150-184 6-40 (263)
325 PRK06949 short chain dehydroge 90.3 1.4 3.1E-05 43.1 8.9 34 150-184 7-41 (258)
326 PRK06046 alanine dehydrogenase 90.3 1.3 2.8E-05 46.0 8.8 75 151-252 128-203 (326)
327 PRK05872 short chain dehydroge 90.2 1.8 3.8E-05 43.9 9.7 34 150-184 7-41 (296)
328 PRK15059 tartronate semialdehy 90.2 1.3 2.8E-05 45.2 8.6 109 154-277 2-121 (292)
329 PRK00142 putative rhodanese-re 90.2 0.16 3.4E-06 52.5 1.9 79 403-495 17-101 (314)
330 PRK09880 L-idonate 5-dehydroge 90.2 1.5 3.2E-05 45.4 9.3 34 151-184 169-202 (343)
331 TIGR03466 HpnA hopanoid-associ 90.1 2 4.4E-05 43.5 10.1 31 154-185 2-33 (328)
332 PRK11730 fadB multifunctional 90.1 0.46 1E-05 54.6 5.8 33 153-186 314-346 (715)
333 PRK12809 putative oxidoreducta 90.1 1.7 3.7E-05 49.3 10.3 95 151-253 309-406 (639)
334 PF10087 DUF2325: Uncharacteri 90.1 1.5 3.2E-05 36.9 7.5 71 206-278 10-86 (97)
335 PLN02928 oxidoreductase family 90.0 0.22 4.7E-06 52.2 2.8 104 148-274 155-262 (347)
336 COG1064 AdhP Zn-dependent alco 90.0 1.6 3.4E-05 45.5 9.0 72 152-251 167-238 (339)
337 PRK06436 glycerate dehydrogena 90.0 0.2 4.3E-06 51.5 2.4 43 142-185 112-154 (303)
338 TIGR01832 kduD 2-deoxy-D-gluco 90.0 1.2 2.7E-05 43.3 8.1 34 150-184 3-37 (248)
339 PRK14194 bifunctional 5,10-met 90.0 1 2.2E-05 46.1 7.5 77 149-276 156-233 (301)
340 PRK06138 short chain dehydroge 90.0 1.7 3.6E-05 42.3 9.0 34 150-184 3-37 (252)
341 PF05368 NmrA: NmrA-like famil 90.0 4.5 9.7E-05 39.2 12.0 94 155-274 1-101 (233)
342 PLN02166 dTDP-glucose 4,6-dehy 89.9 1.9 4E-05 46.7 10.0 34 151-185 119-153 (436)
343 TIGR01759 MalateDH-SF1 malate 89.9 0.83 1.8E-05 47.3 7.0 78 153-252 4-89 (323)
344 PRK12771 putative glutamate sy 89.8 1.9 4E-05 48.2 10.2 35 151-186 136-170 (564)
345 PF02629 CoA_binding: CoA bind 89.8 1.8 3.9E-05 36.3 7.8 90 151-273 2-92 (96)
346 PRK07666 fabG 3-ketoacyl-(acyl 89.8 1.2 2.5E-05 43.2 7.7 36 149-185 4-40 (239)
347 PRK06181 short chain dehydroge 89.8 1.6 3.4E-05 43.0 8.7 31 153-184 2-33 (263)
348 COG1250 FadB 3-hydroxyacyl-CoA 89.8 0.74 1.6E-05 47.2 6.4 32 153-185 4-35 (307)
349 PRK15409 bifunctional glyoxyla 89.8 0.67 1.4E-05 48.0 6.2 90 149-274 142-236 (323)
350 TIGR00065 ftsZ cell division p 89.7 1.5 3.3E-05 45.9 8.8 113 146-273 11-137 (349)
351 PLN02253 xanthoxin dehydrogena 89.7 1.8 3.8E-05 43.2 9.1 35 149-184 15-50 (280)
352 PRK12939 short chain dehydroge 89.7 1.7 3.6E-05 42.2 8.7 33 150-183 5-38 (250)
353 PLN02852 ferredoxin-NADP+ redu 89.7 1.6 3.4E-05 47.9 9.2 96 151-253 25-125 (491)
354 PRK12862 malic enzyme; Reviewe 89.7 0.88 1.9E-05 52.4 7.6 39 148-186 189-229 (763)
355 PRK13394 3-hydroxybutyrate deh 89.6 1.7 3.7E-05 42.5 8.8 35 149-184 4-39 (262)
356 PRK03803 murD UDP-N-acetylmura 89.6 1.2 2.6E-05 48.1 8.3 34 151-185 5-38 (448)
357 PRK12921 2-dehydropantoate 2-r 89.6 1.2 2.6E-05 45.2 7.9 30 154-184 2-31 (305)
358 cd08230 glucose_DH Glucose deh 89.6 1.5 3.2E-05 45.6 8.7 33 151-184 172-204 (355)
359 PRK07814 short chain dehydroge 89.6 1.8 3.8E-05 42.9 8.9 35 150-185 8-43 (263)
360 PRK09330 cell division protein 89.6 2.7 5.9E-05 44.5 10.6 111 150-275 11-135 (384)
361 PF02737 3HCDH_N: 3-hydroxyacy 89.5 0.36 7.9E-06 45.6 3.7 33 154-187 1-33 (180)
362 TIGR01318 gltD_gamma_fam gluta 89.5 1.9 4.2E-05 46.9 9.9 96 151-254 140-238 (467)
363 PRK08277 D-mannonate oxidoredu 89.4 2.2 4.7E-05 42.5 9.5 35 149-184 7-42 (278)
364 PF02056 Glyco_hydro_4: Family 89.4 0.75 1.6E-05 43.6 5.7 106 154-280 1-113 (183)
365 TIGR01316 gltA glutamate synth 89.4 2.2 4.7E-05 46.3 10.1 35 150-185 131-165 (449)
366 PRK10669 putative cation:proto 89.4 1.5 3.2E-05 48.9 9.0 76 152-255 417-494 (558)
367 PRK08213 gluconate 5-dehydroge 89.4 1.9 4.1E-05 42.4 8.9 35 149-184 9-44 (259)
368 PRK11559 garR tartronate semia 89.3 1.1 2.3E-05 45.6 7.2 32 153-185 3-34 (296)
369 cd05313 NAD_bind_2_Glu_DH NAD( 89.3 1.6 3.5E-05 43.6 8.3 37 148-184 34-70 (254)
370 TIGR01850 argC N-acetyl-gamma- 89.3 1.2 2.6E-05 46.6 7.8 97 154-275 2-100 (346)
371 PF04321 RmlD_sub_bind: RmlD s 89.3 0.89 1.9E-05 46.1 6.6 101 154-277 2-103 (286)
372 PLN00141 Tic62-NAD(P)-related 89.2 3.1 6.6E-05 40.9 10.3 32 149-181 14-46 (251)
373 PRK06199 ornithine cyclodeamin 89.2 1.7 3.7E-05 46.0 8.9 76 152-252 155-233 (379)
374 PRK12367 short chain dehydroge 89.2 0.55 1.2E-05 46.5 4.9 40 145-185 7-47 (245)
375 COG2085 Predicted dinucleotide 89.2 2.6 5.6E-05 40.8 9.2 89 153-273 2-92 (211)
376 KOG1205|consensus 89.2 1.9 4.1E-05 43.8 8.7 84 145-248 5-97 (282)
377 PRK06139 short chain dehydroge 89.1 1.3 2.8E-05 46.0 7.7 35 149-184 4-39 (330)
378 PRK05708 2-dehydropantoate 2-r 89.1 0.4 8.7E-06 49.2 3.9 32 153-185 3-34 (305)
379 PRK14982 acyl-ACP reductase; P 89.1 0.4 8.6E-06 50.0 3.9 37 149-185 152-190 (340)
380 PLN02214 cinnamoyl-CoA reducta 89.1 4.4 9.5E-05 42.0 11.8 106 150-276 8-128 (342)
381 PLN02780 ketoreductase/ oxidor 89.0 2.2 4.7E-05 44.0 9.4 62 151-232 52-114 (320)
382 PRK06567 putative bifunctional 89.0 2 4.4E-05 50.5 9.9 41 150-191 381-421 (1028)
383 PLN02657 3,8-divinyl protochlo 89.0 3.3 7E-05 44.0 10.9 33 151-184 59-92 (390)
384 PRK13529 malate dehydrogenase; 88.9 1.7 3.7E-05 48.0 8.7 111 148-273 291-415 (563)
385 PLN03129 NADP-dependent malic 88.9 1.8 3.9E-05 47.9 8.9 103 148-273 317-434 (581)
386 PF03721 UDPG_MGDP_dh_N: UDP-g 88.9 0.6 1.3E-05 44.3 4.7 86 153-253 1-87 (185)
387 PRK12384 sorbitol-6-phosphate 88.8 2.9 6.4E-05 40.9 9.9 33 152-185 2-35 (259)
388 TIGR01757 Malate-DH_plant mala 88.8 1.5 3.4E-05 46.4 8.1 77 153-252 45-130 (387)
389 TIGR01214 rmlD dTDP-4-dehydror 88.8 2.3 5E-05 42.4 9.2 30 154-184 1-31 (287)
390 PRK12829 short chain dehydroge 88.8 1.9 4.1E-05 42.3 8.4 37 147-184 6-43 (264)
391 PRK05876 short chain dehydroge 88.7 1.7 3.7E-05 43.5 8.2 34 150-184 4-38 (275)
392 TIGR03206 benzo_BadH 2-hydroxy 88.7 2 4.4E-05 41.7 8.5 34 150-184 1-35 (250)
393 KOG1093|consensus 88.7 0.14 3.1E-06 55.5 0.4 41 398-443 620-660 (725)
394 KOG0024|consensus 88.7 3.4 7.5E-05 42.5 10.1 35 151-185 169-203 (354)
395 COG1091 RfbD dTDP-4-dehydrorha 88.7 2.1 4.6E-05 43.3 8.7 97 154-276 2-101 (281)
396 PRK07326 short chain dehydroge 88.6 2.3 5E-05 41.0 8.8 34 150-184 4-38 (237)
397 PRK08655 prephenate dehydrogen 88.6 2.4 5.2E-05 45.9 9.6 31 154-185 2-33 (437)
398 PRK13303 L-aspartate dehydroge 88.6 2.6 5.6E-05 42.4 9.3 22 153-174 2-23 (265)
399 PLN02520 bifunctional 3-dehydr 88.5 0.45 9.8E-06 52.7 4.1 34 150-184 377-410 (529)
400 TIGR02371 ala_DH_arch alanine 88.5 1.9 4E-05 44.8 8.4 74 152-252 128-202 (325)
401 PRK07035 short chain dehydroge 88.5 1.9 4.2E-05 42.1 8.2 35 149-184 5-40 (252)
402 PRK05565 fabG 3-ketoacyl-(acyl 88.4 1.7 3.7E-05 42.0 7.8 32 150-181 3-35 (247)
403 cd02201 FtsZ_type1 FtsZ is a G 88.4 5.2 0.00011 41.0 11.6 35 154-188 2-38 (304)
404 PLN00016 RNA-binding protein; 88.4 3.1 6.7E-05 43.8 10.3 114 148-280 48-170 (378)
405 PRK12429 3-hydroxybutyrate deh 88.4 2 4.4E-05 41.8 8.4 34 150-184 2-36 (258)
406 PRK06523 short chain dehydroge 88.4 1.3 2.9E-05 43.4 7.1 37 149-186 6-43 (260)
407 PRK07774 short chain dehydroge 88.3 1.8 3.9E-05 42.1 7.9 35 149-184 3-38 (250)
408 cd08239 THR_DH_like L-threonin 88.3 3.3 7.2E-05 42.5 10.2 34 151-184 163-196 (339)
409 PRK13243 glyoxylate reductase; 88.3 0.52 1.1E-05 49.1 4.1 92 148-275 146-241 (333)
410 COG0039 Mdh Malate/lactate deh 88.2 0.52 1.1E-05 48.4 4.0 33 153-185 1-34 (313)
411 TIGR01373 soxB sarcosine oxida 88.1 0.63 1.4E-05 49.3 4.8 44 151-194 29-73 (407)
412 cd05292 LDH_2 A subgroup of L- 88.0 0.59 1.3E-05 48.0 4.3 32 154-185 2-34 (308)
413 CHL00194 ycf39 Ycf39; Provisio 88.0 3.2 7E-05 42.4 9.8 95 154-276 2-111 (317)
414 PRK14031 glutamate dehydrogena 87.9 1.5 3.2E-05 47.4 7.3 37 149-185 225-261 (444)
415 PRK07792 fabG 3-ketoacyl-(acyl 87.8 3 6.6E-05 42.4 9.5 82 148-250 8-97 (306)
416 PRK12810 gltD glutamate syntha 87.8 3.5 7.5E-05 44.9 10.4 34 151-185 142-175 (471)
417 PF12847 Methyltransf_18: Meth 87.8 2.5 5.5E-05 35.6 7.6 78 151-250 1-78 (112)
418 PRK08945 putative oxoacyl-(acy 87.8 3 6.5E-05 40.6 9.1 37 148-185 8-45 (247)
419 PRK14188 bifunctional 5,10-met 87.7 1.7 3.7E-05 44.4 7.4 77 149-276 155-232 (296)
420 PLN02896 cinnamyl-alcohol dehy 87.7 7.3 0.00016 40.4 12.4 33 151-184 9-42 (353)
421 PRK07109 short chain dehydroge 87.7 2 4.4E-05 44.4 8.2 35 149-184 5-40 (334)
422 PRK07232 bifunctional malic en 87.6 1.3 2.9E-05 50.7 7.2 39 148-186 181-221 (752)
423 PLN02653 GDP-mannose 4,6-dehyd 87.6 4.1 8.8E-05 42.0 10.4 34 150-184 4-38 (340)
424 PRK09072 short chain dehydroge 87.5 2.8 6E-05 41.4 8.7 35 150-185 3-38 (263)
425 PRK06487 glycerate dehydrogena 87.5 0.43 9.4E-06 49.3 3.0 86 148-274 144-233 (317)
426 TIGR00715 precor6x_red precorr 87.5 2.7 5.8E-05 42.1 8.5 94 153-273 1-98 (256)
427 PRK06940 short chain dehydroge 87.5 3.3 7.2E-05 41.4 9.4 31 152-184 2-32 (275)
428 PRK06172 short chain dehydroge 87.5 2.1 4.6E-05 41.8 7.8 34 150-184 5-39 (253)
429 cd05294 LDH-like_MDH_nadp A la 87.4 0.6 1.3E-05 48.0 4.0 33 153-185 1-35 (309)
430 PRK12861 malic enzyme; Reviewe 87.4 1.5 3.2E-05 50.5 7.3 39 148-186 185-225 (764)
431 TIGR01296 asd_B aspartate-semi 87.4 2.2 4.8E-05 44.5 8.2 91 154-274 1-92 (339)
432 PRK07589 ornithine cyclodeamin 87.4 2 4.3E-05 45.0 7.8 75 152-253 129-204 (346)
433 PF03447 NAD_binding_3: Homose 87.4 2.2 4.7E-05 36.9 7.0 85 159-275 1-91 (117)
434 PRK10217 dTDP-glucose 4,6-dehy 87.3 3.8 8.2E-05 42.4 10.0 32 153-184 2-34 (355)
435 TIGR01472 gmd GDP-mannose 4,6- 87.3 4.9 0.00011 41.5 10.8 31 153-184 1-32 (343)
436 PLN02695 GDP-D-mannose-3',5'-e 87.2 3.3 7.2E-05 43.5 9.6 33 151-184 20-53 (370)
437 TIGR01771 L-LDH-NAD L-lactate 87.2 1.3 2.8E-05 45.4 6.3 71 157-252 1-74 (299)
438 PRK11259 solA N-methyltryptoph 87.2 0.62 1.3E-05 48.6 4.0 35 152-187 3-37 (376)
439 PRK06914 short chain dehydroge 87.1 2.3 4.9E-05 42.3 7.9 34 151-185 2-36 (280)
440 PRK08324 short chain dehydroge 87.1 4.6 9.9E-05 46.2 11.2 34 151-185 421-455 (681)
441 PRK12814 putative NADPH-depend 87.1 3.4 7.4E-05 47.0 10.2 35 151-186 192-226 (652)
442 PRK06392 homoserine dehydrogen 87.1 2.6 5.7E-05 43.7 8.5 20 154-173 2-21 (326)
443 PRK10537 voltage-gated potassi 86.9 3 6.4E-05 44.5 8.9 90 148-267 236-327 (393)
444 PRK08594 enoyl-(acyl carrier p 86.9 3.1 6.6E-05 41.2 8.6 33 150-183 5-40 (257)
445 PRK09987 dTDP-4-dehydrorhamnos 86.9 2.5 5.4E-05 43.0 8.1 30 154-185 2-32 (299)
446 PRK07453 protochlorophyllide o 86.8 2.6 5.7E-05 43.1 8.4 34 150-184 4-38 (322)
447 PRK15461 NADH-dependent gamma- 86.8 1.9 4.2E-05 43.9 7.2 33 153-186 2-34 (296)
448 PLN02545 3-hydroxybutyryl-CoA 86.8 0.76 1.6E-05 46.7 4.3 33 153-186 5-37 (295)
449 cd05297 GH4_alpha_glucosidase_ 86.8 1.4 3.1E-05 47.4 6.5 94 154-268 2-102 (423)
450 PRK12746 short chain dehydroge 86.7 2 4.4E-05 41.9 7.2 30 148-177 2-32 (254)
451 PRK05653 fabG 3-ketoacyl-(acyl 86.7 2.6 5.5E-05 40.6 7.8 35 150-185 3-38 (246)
452 PRK00811 spermidine synthase; 86.7 3.5 7.6E-05 41.8 9.0 35 151-186 76-110 (283)
453 PRK11154 fadJ multifunctional 86.7 0.95 2.1E-05 52.0 5.4 33 153-186 310-343 (708)
454 PRK05671 aspartate-semialdehyd 86.6 2.7 5.8E-05 43.8 8.3 92 153-274 5-97 (336)
455 PRK15438 erythronate-4-phospha 86.6 0.7 1.5E-05 48.9 4.0 35 149-184 113-147 (378)
456 COG0665 DadA Glycine/D-amino a 86.5 0.84 1.8E-05 47.7 4.6 41 151-192 3-43 (387)
457 TIGR02437 FadB fatty oxidation 86.5 0.99 2.2E-05 51.9 5.4 33 153-186 314-346 (714)
458 PRK03369 murD UDP-N-acetylmura 86.4 2 4.4E-05 47.0 7.7 90 150-272 10-99 (488)
459 PLN02503 fatty acyl-CoA reduct 86.4 5.2 0.00011 45.1 10.9 130 144-280 111-273 (605)
460 KOG2016|consensus 86.4 0.7 1.5E-05 48.9 3.8 45 314-358 478-523 (523)
461 cd05298 GH4_GlvA_pagL_like Gly 86.3 3.9 8.4E-05 44.2 9.5 106 154-282 2-114 (437)
462 PRK06249 2-dehydropantoate 2-r 86.3 0.75 1.6E-05 47.3 3.9 34 152-186 5-38 (313)
463 PRK10675 UDP-galactose-4-epime 86.3 7.5 0.00016 39.7 11.5 29 154-183 2-31 (338)
464 PRK08063 enoyl-(acyl carrier p 86.3 2.8 6.1E-05 40.7 7.9 30 150-179 2-32 (250)
465 KOG0409|consensus 86.3 2 4.4E-05 43.6 6.8 59 124-183 6-65 (327)
466 PRK08226 short chain dehydroge 86.2 2.9 6.2E-05 41.1 8.0 35 149-184 3-38 (263)
467 PRK06124 gluconate 5-dehydroge 86.2 3.1 6.7E-05 40.7 8.2 35 150-185 9-44 (256)
468 PF02423 OCD_Mu_crystall: Orni 86.1 2.3 4.9E-05 43.9 7.4 75 152-253 128-203 (313)
469 PRK08589 short chain dehydroge 86.1 2.3 5E-05 42.4 7.3 34 149-183 3-37 (272)
470 cd08281 liver_ADH_like1 Zinc-d 86.1 3.4 7.5E-05 43.2 8.9 33 152-184 192-224 (371)
471 PRK00257 erythronate-4-phospha 86.1 0.78 1.7E-05 48.6 4.0 35 149-184 113-147 (381)
472 PRK08264 short chain dehydroge 86.0 0.81 1.8E-05 44.3 3.9 36 150-185 4-40 (238)
473 PTZ00188 adrenodoxin reductase 86.0 3.9 8.5E-05 44.8 9.3 96 151-253 38-137 (506)
474 PRK06129 3-hydroxyacyl-CoA deh 86.0 0.81 1.8E-05 46.9 4.0 33 153-186 3-35 (308)
475 PRK06196 oxidoreductase; Provi 85.9 2.8 6E-05 42.8 7.9 35 150-185 24-59 (315)
476 PRK12409 D-amino acid dehydrog 85.9 0.83 1.8E-05 48.5 4.2 33 153-186 2-34 (410)
477 PRK13018 cell division protein 85.9 4.7 0.0001 42.7 9.6 37 150-186 26-64 (378)
478 COG0287 TyrA Prephenate dehydr 85.9 1.9 4.2E-05 43.7 6.6 27 152-178 3-29 (279)
479 PF01266 DAO: FAD dependent ox 85.8 0.92 2E-05 46.3 4.4 35 154-189 1-35 (358)
480 PRK08265 short chain dehydroge 85.8 0.96 2.1E-05 44.7 4.4 36 149-185 3-39 (261)
481 PRK12744 short chain dehydroge 85.8 4.5 9.7E-05 39.7 9.1 33 149-181 5-38 (257)
482 PF01370 Epimerase: NAD depend 85.7 3.1 6.8E-05 39.8 7.9 26 155-180 1-27 (236)
483 PRK12831 putative oxidoreducta 85.7 4.1 9E-05 44.3 9.6 34 151-185 139-172 (464)
484 PRK06823 ornithine cyclodeamin 85.7 3.6 7.7E-05 42.5 8.6 75 152-253 128-203 (315)
485 PLN02572 UDP-sulfoquinovose sy 85.7 2.6 5.7E-05 45.5 8.0 35 150-185 45-80 (442)
486 PRK07067 sorbitol dehydrogenas 85.7 1.6 3.4E-05 42.9 5.8 37 149-186 3-40 (257)
487 COG3453 Uncharacterized protei 85.7 2.2 4.9E-05 37.4 5.9 80 400-491 14-109 (130)
488 smart00846 Gp_dh_N Glyceraldeh 85.7 0.8 1.7E-05 42.0 3.4 104 154-263 2-108 (149)
489 COG1023 Gnd Predicted 6-phosph 85.6 3.7 8E-05 40.5 7.9 115 154-277 2-122 (300)
490 COG0686 Ald Alanine dehydrogen 85.6 1.5 3.2E-05 44.8 5.4 76 150-252 166-241 (371)
491 PRK12937 short chain dehydroge 85.6 3.4 7.5E-05 39.9 8.1 30 150-179 3-33 (245)
492 TIGR02441 fa_ox_alpha_mit fatt 85.6 1 2.2E-05 52.0 4.9 33 153-186 336-368 (737)
493 COG1062 AdhC Zn-dependent alco 85.6 6.6 0.00014 40.8 10.1 97 151-271 185-283 (366)
494 PRK05855 short chain dehydroge 85.4 2.7 5.9E-05 46.3 8.2 38 146-184 309-347 (582)
495 TIGR01746 Thioester-redct thio 85.4 8.7 0.00019 39.3 11.5 30 154-183 1-32 (367)
496 PRK11150 rfaD ADP-L-glycero-D- 85.4 3.4 7.5E-05 41.8 8.3 31 155-185 2-33 (308)
497 PLN02650 dihydroflavonol-4-red 85.4 9.3 0.0002 39.5 11.7 32 152-184 5-37 (351)
498 cd05197 GH4_glycoside_hydrolas 85.4 5.4 0.00012 43.0 10.0 106 154-282 2-114 (425)
499 PRK04207 glyceraldehyde-3-phos 85.3 6.5 0.00014 41.1 10.4 38 237-275 73-110 (341)
500 PRK06198 short chain dehydroge 85.3 1.6 3.4E-05 42.9 5.6 37 149-185 3-40 (260)
No 1
>KOG2017|consensus
Probab=100.00 E-value=5.7e-81 Score=612.84 Aligned_cols=386 Identities=47% Similarity=0.866 Sum_probs=364.4
Q ss_pred CCCCHHHHhhhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCC
Q psy13373 123 SKFSKDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHT 202 (525)
Q Consensus 123 ~~l~~~~~~rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~d 202 (525)
+.||.+|+.||+||+.+|++|..||.+|++++|+|||||||||.++.+|+.+|||+|.|||.|.|+.+||+||++++++.
T Consensus 37 ~~Ls~dei~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~ 116 (427)
T KOG2017|consen 37 AGLSLDEILRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEAR 116 (427)
T ss_pred cCCCHHHHHhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceE
Q psy13373 203 IGQPKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQL 282 (525)
Q Consensus 203 iG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v 282 (525)
+|+.|+++++..++++||.++|..|...++.+|..+++++||+|+|||||..+|++|++.|+..|+|+|+++..++.||+
T Consensus 117 vg~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSaLr~EGQL 196 (427)
T KOG2017|consen 117 VGMHKAESAAAFLRRLNSHVEVQTYNEFLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSALRWEGQL 196 (427)
T ss_pred hhhHHHHHHHHHHHhcCCCceeeechhhccchhHHHHhhccceEEEcCCCccchhhhhhHHHHcCCccccccccccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCceeecCCCCCCCCCCCCcCCCCcccchhHHHHHHHHHHHHHHHhCC-CCC-CeEEEEEcCCCeeEEeeecC
Q psy13373 283 CVYNYKGGPCYRCIYPVPPPAETVGTCGDNGVLGPVPGVMGTLQAVETIKLLIGL-PVM-DKLLVYDAELSKFLSVKLRK 360 (525)
Q Consensus 283 ~v~~~~~~~c~~c~~~~~~~~~~~~~c~~~~~~~~~~~ivg~~~a~e~lk~l~g~-~~l-~~~~~~d~~~~~~~~~~l~~ 360 (525)
.++++..+|||+|+||.+|+++.+.+|++.|++||+++++|+|+|.|+||.++|. +.+ +++++||+.++.|++++++.
T Consensus 197 tvYny~~GPCYRClFP~Ppp~~~vt~C~dgGVlGpv~GviG~mQALE~iKli~~~~~~~s~~lllfdg~~~~~r~irlR~ 276 (427)
T KOG2017|consen 197 TVYNYNNGPCYRCLFPNPPPPEAVTNCADGGVLGPVTGVIGCMQALETIKLIAGIGESLSGRLLLFDGLSGHFRTIRLRS 276 (427)
T ss_pred EEeecCCCceeeecCCCCcChHHhcccccCceeecchhhhhHHHHHHHHHHHHccCccCCcceEEEecccceeEEEEecc
Confidence 9999999999999999999999999999999999999999999999999999999 888 99999999999999999999
Q ss_pred CCCCC-cc-CCCCccccccchhhccccCCCCCCCccCCCCCcccChhhhHHHHHhcCCCcEEEecCChhhhhcCCCCCeE
Q psy13373 361 KKEDC-VC-AHPADTQLVDYEVFCSSRANDKTPDISILDPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIAS 438 (525)
Q Consensus 361 r~p~C-~C-~~~~~~~l~~y~~~cg~~~~~~~~~~~~~~~~~~is~~el~~~~l~~~~~~~lIDVR~~~E~~~ghIpGAi 438 (525)
|++.| +| .+|.++.+.+|+.|||..+.+.. .++++.+..+|+..++++. +++++.+++||||++.||+..|+|+|+
T Consensus 277 r~~~C~~Cg~n~tit~~~dYe~fCg~~~~~~~-~l~lL~~~~Rvsv~d~k~i-l~~~~~h~llDvRp~~~~eI~~lP~av 354 (427)
T KOG2017|consen 277 RRPKCAVCGKNPTITSLIDYELFCGSSATDKC-PLKLLEPDERVSVTDYKRI-LDSGAKHLLLDVRPSHEYEICRLPEAV 354 (427)
T ss_pred CCCCCcccCCCCccCcccchhcccCCcccccc-chhcCChhhcccHHHHHHH-HhcCCCeEEEeccCcceEEEEeccccc
Confidence 99999 99 88999999999999999999988 6788999999999999999 998778999999999999999999999
Q ss_pred EeChhhHHHHHhhcCCchHHHHhhhhhc-CCCCeEEEEcCcChHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHhc
Q psy13373 439 HATMADVQLMFAEAGECPAFLESLREDI-LAHRHVFVICRRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKY 517 (525)
Q Consensus 439 nip~~~l~~~~~~~~~~~~~l~~l~~~~-~~~~~Ivv~C~~G~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~ 517 (525)
|||+.++...-+ +++...+ ....+|+|+|+.|+.|+.|++.|++.+.... ++-+.||+.+|..+
T Consensus 355 NIPL~~l~~~~~---------~~~~~~~~~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~------vrDvigGl~~w~~~ 419 (427)
T KOG2017|consen 355 NIPLKELRSRSG---------KKLQGDLNTESKDIFVICRRGNDSQRAVRILREKFPDSS------VRDVIGGLKAWAAK 419 (427)
T ss_pred ccchhhhhhhhh---------hhhcccccccCCCEEEEeCCCCchHHHHHHHHhhCCchh------hhhhhhHHHHHHHh
Confidence 999999987610 1221111 2467799999999999999999998876542 77889999999999
Q ss_pred ccCCCCCC
Q psy13373 518 VDNRIPTY 525 (525)
Q Consensus 518 ~~p~~p~~ 525 (525)
++|++|.|
T Consensus 420 vd~~fP~Y 427 (427)
T KOG2017|consen 420 VDPNFPLY 427 (427)
T ss_pred cCcCCCCC
Confidence 99999998
No 2
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=7.4e-76 Score=616.55 Aligned_cols=377 Identities=40% Similarity=0.676 Sum_probs=338.7
Q ss_pred CCCHHHHhhhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCC
Q psy13373 124 KFSKDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTI 203 (525)
Q Consensus 124 ~l~~~~~~rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~di 203 (525)
.||+.+.+||+||+++++||.++|+||++++|+||||||||++++++|+++|||+|+|+|+|.|+.+||+||+||+.+||
T Consensus 10 ~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dv 89 (390)
T PRK07411 10 QLSKDEYERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWV 89 (390)
T ss_pred cCCHHHHHHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceEE
Q psy13373 204 GQPKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLC 283 (525)
Q Consensus 204 G~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~ 283 (525)
|++||++++++|+++||+++|+++...++.++..++++++|+||+|+|++++|.+||++|++.++|+|++++.|+.|++.
T Consensus 90 G~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~g~~~ 169 (390)
T PRK07411 90 GKPKIESAKNRILEINPYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEGQAT 169 (390)
T ss_pred CCcHHHHHHHHHHHHCCCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccCEEEEE
Confidence 99999999999999999999999999999888889999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCceeecCCCCCCCCCCCCcCCCCcccchhHHHHHHHHHHHHHHHhCC-CCC-CeEEEEEcCCCeeEEeeecCC
Q psy13373 284 VYNYKGGPCYRCIYPVPPPAETVGTCGDNGVLGPVPGVMGTLQAVETIKLLIGL-PVM-DKLLVYDAELSKFLSVKLRKK 361 (525)
Q Consensus 284 v~~~~~~~c~~c~~~~~~~~~~~~~c~~~~~~~~~~~ivg~~~a~e~lk~l~g~-~~l-~~~~~~d~~~~~~~~~~l~~r 361 (525)
++.++.+|||+|+|+..++......|...|++||+++++|+++|.|+||+|+|. +++ +++++||+.+++|+.+++. |
T Consensus 170 v~~~~~~~c~~c~~~~~~~~~~~~~c~~~gvlg~~~~~~g~~~a~eaik~l~g~~~~l~~~l~~~d~~~~~~~~~~~~-~ 248 (390)
T PRK07411 170 VFNYEGGPNYRDLYPEPPPPGMVPSCAEGGVLGILPGIIGVIQATETIKIILGAGNTLSGRLLLYNALDMKFRELKLR-P 248 (390)
T ss_pred EECCCCCCChHHhcCCCCCcccCCCCccCCcCcchHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEECCCCceeEEecc-C
Confidence 998777899999999866656667899999999999999999999999999999 777 9999999999999999996 8
Q ss_pred CCCC-ccCCCCccccccchhhccccCCCCCCCccCCCCCcccChhhhHHHHHhcCC-CcEEEecCChhhhhcCCCCCeEE
Q psy13373 362 KEDC-VCAHPADTQLVDYEVFCSSRANDKTPDISILDPTEHLTALDYRDEFLARRV-AHTLLDVRSVDEFAMMSLNIASH 439 (525)
Q Consensus 362 ~p~C-~C~~~~~~~l~~y~~~cg~~~~~~~~~~~~~~~~~~is~~el~~~~l~~~~-~~~lIDVR~~~E~~~ghIpGAin 439 (525)
+|+| +|. .+.+|..|||....+..... .......|+++++.++ ++++. +.+|||||+++||..||||||+|
T Consensus 249 ~~~c~~i~-----~~~~~~~~~G~~~~~~~~~~-~~~~~~~Is~~el~~~-l~~~~~~~vlIDVR~~~E~~~ghIpGAin 321 (390)
T PRK07411 249 NPERPVIE-----KLIDYEQFCGIPQAKAAEAA-QKAEIPEMTVTELKAL-LDSGADDFVLIDVRNPNEYEIARIPGSVL 321 (390)
T ss_pred CCCCCccc-----cccchhhhcccccccccccc-cccccCccCHHHHHHH-HhCCCCCeEEEECCCHHHhccCcCCCCEE
Confidence 8999 773 24478889987554322111 1245678999999999 87653 57899999999999999999999
Q ss_pred eChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEcCcChHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHhccc
Q psy13373 440 ATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKYVD 519 (525)
Q Consensus 440 ip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C~~G~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~~~ 519 (525)
+|+.++... ...+.+.++. ++++||+||++|.||..++..|++.||+ +++|.||+.+|+++++
T Consensus 322 iP~~~l~~~-----~~~~~l~~l~----~d~~IVvyC~~G~RS~~aa~~L~~~G~~--------~~~l~GG~~~W~~~~~ 384 (390)
T PRK07411 322 VPLPDIENG-----PGVEKVKELL----NGHRLIAHCKMGGRSAKALGILKEAGIE--------GTNVKGGITAWSREVD 384 (390)
T ss_pred ccHHHhhcc-----cchHHHhhcC----CCCeEEEECCCCHHHHHHHHHHHHcCCC--------eEEecchHHHHHHhcC
Confidence 999887542 0112244443 7899999999999999999999999997 4579999999999999
Q ss_pred CCCCCC
Q psy13373 520 NRIPTY 525 (525)
Q Consensus 520 p~~p~~ 525 (525)
|.+|.|
T Consensus 385 p~~p~y 390 (390)
T PRK07411 385 PSVPQY 390 (390)
T ss_pred CCCCCC
Confidence 999998
No 3
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=7.3e-74 Score=602.65 Aligned_cols=374 Identities=36% Similarity=0.604 Sum_probs=339.4
Q ss_pred CCCCHHHHhhhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCC
Q psy13373 123 SKFSKDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHT 202 (525)
Q Consensus 123 ~~l~~~~~~rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~d 202 (525)
..||+++.+||+||+++++||.++|+||++++|+|||+||+|+++|++|+++|||+|+|+|+|.|+.+||+||++|+.+|
T Consensus 13 ~~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~d 92 (392)
T PRK07878 13 AELTRDEVARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSD 92 (392)
T ss_pred cCCCHHHHHHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceE
Q psy13373 203 IGQPKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQL 282 (525)
Q Consensus 203 iG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v 282 (525)
||++|+++++++|+++||+++|+++...++.++..++++++|+||+|+|++..|.++|++|+++++|+|++++.|+.|++
T Consensus 93 iG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~G~v 172 (392)
T PRK07878 93 VGRSKAQSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRFEGQA 172 (392)
T ss_pred CCChHHHHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEE
Confidence 99999999999999999999999999999888888899999999999999999999999999999999999999999999
Q ss_pred EEEec----CCCCceeecCCCCCCCCCCCCcCCCCcccchhHHHHHHHHHHHHHHHhCC-CCC-CeEEEEEcCCCeeEEe
Q psy13373 283 CVYNY----KGGPCYRCIYPVPPPAETVGTCGDNGVLGPVPGVMGTLQAVETIKLLIGL-PVM-DKLLVYDAELSKFLSV 356 (525)
Q Consensus 283 ~v~~~----~~~~c~~c~~~~~~~~~~~~~c~~~~~~~~~~~ivg~~~a~e~lk~l~g~-~~l-~~~~~~d~~~~~~~~~ 356 (525)
+++.+ +.++||+|+++..+.......|.+.|+++|+++++|+++|+|+||+|+|. +++ ++++.||+.+++|+.+
T Consensus 173 ~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~gv~g~~~~~~g~~~a~e~ik~l~g~~~~~~~~l~~~d~~~~~~~~~ 252 (392)
T PRK07878 173 SVFWEDAPDGLGLNYRDLYPEPPPPGMVPSCAEGGVLGVLCASIGSIMGTEAIKLITGIGEPLLGRLMVYDALEMTYRTI 252 (392)
T ss_pred EEEecCCCCCCCCeeeeecCCCCCccCCCCCccCCccchHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCceeeE
Confidence 98864 36899999998766666677999999999999999999999999999999 777 9999999999999999
Q ss_pred eecCCCCCCccCCCCccccccchhhccccCCCCCCCccCCCCCcccChhhhHHHHHhcCCCcEEEecCChhhhhcCCCCC
Q psy13373 357 KLRKKKEDCVCAHPADTQLVDYEVFCSSRANDKTPDISILDPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNI 436 (525)
Q Consensus 357 ~l~~r~p~C~C~~~~~~~l~~y~~~cg~~~~~~~~~~~~~~~~~~is~~el~~~~l~~~~~~~lIDVR~~~E~~~ghIpG 436 (525)
++. ++|+| +.+..+.+|..+|+....+ .........|+++++.++ ++++.+.+|||||+++||..+||||
T Consensus 253 ~~~-~~~~C----~~~~~~~~~~~~c~~~~~~----~~~~~~~~~Is~~el~~~-l~~~~~~~lIDvR~~~ef~~ghIpG 322 (392)
T PRK07878 253 KIR-KDPST----PKITELIDYEAFCGVVSDE----AQQAAAGSTITPRELKEW-LDSGKKIALIDVREPVEWDIVHIPG 322 (392)
T ss_pred eec-cCCCC----Ccccccccchhhccccccc----ccccCCCCccCHHHHHHH-HhCCCCeEEEECCCHHHHhcCCCCC
Confidence 996 88999 3455666899999874321 112355678999999999 8876567899999999999999999
Q ss_pred eEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEcCcChHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHh
Q psy13373 437 ASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQK 516 (525)
Q Consensus 437 Ainip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C~~G~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~ 516 (525)
|+|+|+..+... ..+.++ +++++||+||++|.||..++..|++.||++ |++|+||+.+|++
T Consensus 323 Ainip~~~l~~~--------~~~~~l----~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~-------V~~L~GG~~~W~~ 383 (392)
T PRK07878 323 AQLIPKSEILSG--------EALAKL----PQDRTIVLYCKTGVRSAEALAALKKAGFSD-------AVHLQGGVVAWAK 383 (392)
T ss_pred CEEcChHHhcch--------hHHhhC----CCCCcEEEEcCCChHHHHHHHHHHHcCCCc-------EEEecCcHHHHHH
Confidence 999999887542 114444 488999999999999999999999999988 9999999999999
Q ss_pred cccCCCCCC
Q psy13373 517 YVDNRIPTY 525 (525)
Q Consensus 517 ~~~p~~p~~ 525 (525)
.+++.+|.|
T Consensus 384 ~~~~~~p~~ 392 (392)
T PRK07878 384 QVDPSLPMY 392 (392)
T ss_pred hcCCCCCCC
Confidence 999999998
No 4
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=3.3e-69 Score=560.10 Aligned_cols=349 Identities=36% Similarity=0.521 Sum_probs=311.9
Q ss_pred HHHHhhhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCc
Q psy13373 127 KDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQP 206 (525)
Q Consensus 127 ~~~~~rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~ 206 (525)
..+.+||+||+++++||.++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+.+||+||++|+++|+|++
T Consensus 3 ~~~~~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~ 82 (355)
T PRK05597 3 NLDIARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQP 82 (355)
T ss_pred hHHHhHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCCh
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceEEEEe
Q psy13373 207 KVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCVYN 286 (525)
Q Consensus 207 Ka~~~~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~v~~ 286 (525)
|+++++++|+++||+++|+++...++.++..++++++|+||+|+|++..|.++|++|+++++|+|++++.|+.|++.++.
T Consensus 83 Ka~~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~~g~v~~~~ 162 (355)
T PRK05597 83 KAESAREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGFDAQLSVFH 162 (355)
T ss_pred HHHHHHHHHHHHCCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCeEEEEEEc
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999999999998
Q ss_pred cCCCCceeecCCCCCCCCCCCCcCCCCcccchhHHHHHHHHHHHHHHHhCC-CCC-CeEEEEEcCCCeeEEeeecCCCCC
Q psy13373 287 YKGGPCYRCIYPVPPPAETVGTCGDNGVLGPVPGVMGTLQAVETIKLLIGL-PVM-DKLLVYDAELSKFLSVKLRKKKED 364 (525)
Q Consensus 287 ~~~~~c~~c~~~~~~~~~~~~~c~~~~~~~~~~~ivg~~~a~e~lk~l~g~-~~l-~~~~~~d~~~~~~~~~~l~~r~p~ 364 (525)
|+.+|||+|+++..++......|...|+++|+++++|+++|.|+||+|+|. +++ ++++.||+++++|+.+++. ++|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~c~~~gv~g~~~~~~g~~~a~e~ik~l~g~~~~l~~~l~~~d~~~~~~~~~~~~-~~~~ 241 (355)
T PRK05597 163 AGHGPIYEDLFPTPPPPGSVPSCSQAGVLGPVVGVVGSAMAMEALKLITGVGTPLIGKLGYYDSLDGTWEYIPVV-GNPA 241 (355)
T ss_pred CCCCCCHHHhCCCCCCccCCCCccccCcchhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCCCeEEEEecc-CCCC
Confidence 888899999998876656667899999999999999999999999999999 778 9999999999999999996 8899
Q ss_pred C-ccCCCCccccccchhhccccCCCCCCCccCCCCCcccChhhhHHHHHhcCCCcEEEecCChhhhhcCCCCCeEEeChh
Q psy13373 365 C-VCAHPADTQLVDYEVFCSSRANDKTPDISILDPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMA 443 (525)
Q Consensus 365 C-~C~~~~~~~l~~y~~~cg~~~~~~~~~~~~~~~~~~is~~el~~~~l~~~~~~~lIDVR~~~E~~~ghIpGAinip~~ 443 (525)
| .+-. . +..+|+.. .++...++++++.++ . .+.+|||||+++||..+|||||+|+|+.
T Consensus 242 ~~~~~~----~---~~~~~~~~----------~~~~~~i~~~~~~~~-~---~~~~IIDVR~~~ef~~ghIpgAinip~~ 300 (355)
T PRK05597 242 VLERVR----G---STPVHGIS----------GGFGEVLDVPRVSAL-P---DGVTLIDVREPSEFAAYSIPGAHNVPLS 300 (355)
T ss_pred Cccccc----c---cccccccc----------CCcccccCHHHHHhc-c---CCCEEEECCCHHHHccCcCCCCEEeCHH
Confidence 8 3321 1 11133221 133457889988865 2 2478999999999999999999999998
Q ss_pred hHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEcCcChHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHh
Q psy13373 444 DVQLMFAEAGECPAFLESLREDILAHRHVFVICRRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQK 516 (525)
Q Consensus 444 ~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C~~G~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~ 516 (525)
++... .... .++++++||+||++|.||..++..|++.||++ |++|+||+.+|.+
T Consensus 301 ~l~~~----------~~~~--~~~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~n-------V~~L~GGi~~W~~ 354 (355)
T PRK05597 301 AIREG----------ANPP--SVSAGDEVVVYCAAGVRSAQAVAILERAGYTG-------MSSLDGGIEGWLD 354 (355)
T ss_pred Hhhhc----------cccc--cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCC-------EEEecCcHHHHhh
Confidence 87654 1111 12478899999999999999999999999998 9999999999974
No 5
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=4.8e-69 Score=560.08 Aligned_cols=348 Identities=30% Similarity=0.489 Sum_probs=311.3
Q ss_pred CCCHHHHhhhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCC
Q psy13373 124 KFSKDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTI 203 (525)
Q Consensus 124 ~l~~~~~~rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~di 203 (525)
.|++.|.+||+||+++++||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+||++|+.+||
T Consensus 13 ~~~~~e~~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~di 92 (370)
T PRK05600 13 QLPTSELRRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDV 92 (370)
T ss_pred CCCHHHHHHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHC
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceEE
Q psy13373 204 GQPKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLC 283 (525)
Q Consensus 204 G~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~ 283 (525)
|++|+++++++|+++||+++|+++...++.++..++++++|+||+|+|++.+|.++|++|+++++|+|++++.|+.|++.
T Consensus 93 G~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~g~~G~v~ 172 (370)
T PRK05600 93 GRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLRFHGELA 172 (370)
T ss_pred CCHHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCEEEEE
Confidence 99999999999999999999999999999888889999999999999999999999999999999999999999999999
Q ss_pred EEecC---CCCceeecCCCCCCCCCCCCcCCCCcccchhHHHHHHHHHHHHHHHhCC-CCC-CeEEEEEcCCCeeEEeee
Q psy13373 284 VYNYK---GGPCYRCIYPVPPPAETVGTCGDNGVLGPVPGVMGTLQAVETIKLLIGL-PVM-DKLLVYDAELSKFLSVKL 358 (525)
Q Consensus 284 v~~~~---~~~c~~c~~~~~~~~~~~~~c~~~~~~~~~~~ivg~~~a~e~lk~l~g~-~~l-~~~~~~d~~~~~~~~~~l 358 (525)
++.+. .++||+|+|++.+..+...+|...|+++|+++++|+++|.|++|+|+|. +++ ++++.||+.+++|+.+++
T Consensus 173 v~~~~~~~~~~~~~~l~~~~~~~~~~~~c~~~gvlg~~~~~ig~~~a~eaik~l~g~g~~l~g~ll~~d~~~~~~~~~~~ 252 (370)
T PRK05600 173 VFNSGPDHRGVGLRDLFPEQPSGDSIPDCATAGVLGATTAVIGALMATEAIKFLTGIGDVQPGTVLSYDALTATTRSFRV 252 (370)
T ss_pred EEecCCCCCCCCcHhhCCCCCccccCCCCccCCcchhHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCEEEEEEe
Confidence 88765 3799999999866555667899999999999999999999999999999 777 999999999999999999
Q ss_pred cCCCCCC-ccCCCCccccccchhhccccCCCCCCCccCCCCCcccChhhhHHHHHhcCCCcEEEecCChhhhhcCCCC--
Q psy13373 359 RKKKEDC-VCAHPADTQLVDYEVFCSSRANDKTPDISILDPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLN-- 435 (525)
Q Consensus 359 ~~r~p~C-~C~~~~~~~l~~y~~~cg~~~~~~~~~~~~~~~~~~is~~el~~~~l~~~~~~~lIDVR~~~E~~~ghIp-- 435 (525)
. ++|.| +|.... ++|..+ .++++|+.++ ++++ +.+|||||+++||+.+|||
T Consensus 253 ~-~~~~c~~~~~~~----~~~~~~-------------------~~~~~el~~~-l~~~-~~~lIDVR~~~E~~~ghI~~~ 306 (370)
T PRK05600 253 G-ADPARPLVTRLR----PSYEAA-------------------RTDTTSLIDA-TLNG-SATLLDVREPHEVLLKDLPEG 306 (370)
T ss_pred c-CCCCCCcccccc----Ccchhc-------------------ccCHHHHHHH-HhcC-CeEEEECCCHHHhhhccCCCC
Confidence 5 88999 884321 445422 6799999999 8875 5789999999999999998
Q ss_pred -CeEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEcCcChHHHHHHHHHHHccCCCCCCCcccEEEecccHH
Q psy13373 436 -IASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYK 512 (525)
Q Consensus 436 -GAinip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C~~G~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~ 512 (525)
||+|+|+.++.... ..+..+.. .+++ +|||||++|.||..|+..|++.||+++ |++|+||+.
T Consensus 307 ~gAinIPl~~l~~~~-------~~~~~l~~-~~~~-~Ivv~C~sG~RS~~Aa~~L~~~G~~~~------v~~l~GG~~ 369 (370)
T PRK05600 307 GASLKLPLSAITDDA-------DILHALSP-IDGD-NVVVYCASGIRSADFIEKYSHLGHELT------LHNLPGGVN 369 (370)
T ss_pred CccEeCcHHHhhcch-------hhhhhccc-cCCC-cEEEECCCChhHHHHHHHHHHcCCCCc------eEEeccccC
Confidence 69999999886420 00122211 1244 999999999999999999999999732 899999985
No 6
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=100.00 E-value=7.1e-55 Score=449.18 Aligned_cols=298 Identities=29% Similarity=0.488 Sum_probs=265.8
Q ss_pred hhhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCC--CCcHH
Q psy13373 131 ERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTI--GQPKV 208 (525)
Q Consensus 131 ~rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~di--G~~Ka 208 (525)
+||+||++++.||.++|++|++++|+|||+||+|+++|++|+++|||+|+|+|.|.|+.+||+||++|.++|+ |++|+
T Consensus 3 ~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka 82 (339)
T PRK07688 3 ERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKA 82 (339)
T ss_pred chhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHH
Confidence 4999999999999999999999999999999999999999999999999999999999999999999999999 56999
Q ss_pred HHHHHHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceEEEEecC
Q psy13373 209 TSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCVYNYK 288 (525)
Q Consensus 209 ~~~~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~v~~~~ 288 (525)
++++++|+++||+++++++...++.++..++++++|+||+|+|++..+.++|++|++.++|+|++++.|+.|++.++.|+
T Consensus 83 ~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g~~G~~~~~~p~ 162 (339)
T PRK07688 83 VAAKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVGSYGLSYTIIPG 162 (339)
T ss_pred HHHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeeeeeeEEEEECCC
Confidence 99999999999999999999999888888899999999999999999999999999999999999999999999888888
Q ss_pred CCCceeecCCCCCCCCCCCCcCCCCcccchhHHHHHHHHHHHHHHHhCC-CCC-CeEEEEEcCCCeeEEeeec-CCCCCC
Q psy13373 289 GGPCYRCIYPVPPPAETVGTCGDNGVLGPVPGVMGTLQAVETIKLLIGL-PVM-DKLLVYDAELSKFLSVKLR-KKKEDC 365 (525)
Q Consensus 289 ~~~c~~c~~~~~~~~~~~~~c~~~~~~~~~~~ivg~~~a~e~lk~l~g~-~~l-~~~~~~d~~~~~~~~~~l~-~r~p~C 365 (525)
.++||+|+++..+... ..|...|+++|+++++|+++|.|+||+|+|. +.+ ++++.||.++++|+.+++. .|+|+|
T Consensus 163 ~~pC~~Cl~~~~~~~~--~~c~~~gv~~p~~~~i~~~~a~ealk~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~~~~~~C 240 (339)
T PRK07688 163 KTPCLRCLLQSIPLGG--ATCDTAGIISPAVQIVASYQVTEALKLLVGDYEALRDGLVSFDVWKNEYSCMNVQKLKKDNC 240 (339)
T ss_pred CCCCeEeecCCCCCCC--CCCccCCcccHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEEEEecCCCCCCC
Confidence 8999999998765543 5799999999999999999999999999999 777 9999999999999999875 467999
Q ss_pred -ccC-CCCcccc-----ccchhhccccCCCCCCCccCCCCCcccChhhhHHHHHh-c----CCCcEEEecCChhhhhcCC
Q psy13373 366 -VCA-HPADTQL-----VDYEVFCSSRANDKTPDISILDPTEHLTALDYRDEFLA-R----RVAHTLLDVRSVDEFAMMS 433 (525)
Q Consensus 366 -~C~-~~~~~~l-----~~y~~~cg~~~~~~~~~~~~~~~~~~is~~el~~~~l~-~----~~~~~lIDVR~~~E~~~gh 433 (525)
+|+ ++.++.+ +.+..+||+.+.+... .....++++++.++ +. . +.+.++||||++. |...+
T Consensus 241 p~Cg~~~~~~~~~~~~~~~~~~lcg~~~~~~~~-----~~~~~i~~~~~~~~-l~~~~~~~~~~~~ll~vr~~~-~~~~~ 313 (339)
T PRK07688 241 PSCGEKALYPYLNYENTTKTAVLCGRNTVQIRP-----PHKEEYDLEELAEL-LRDRGLDVNVNPYLLSFSLEE-KRLVL 313 (339)
T ss_pred CCCCCCCCccccchhhccchhhhcCcccccccc-----CCcCccCHHHHHHH-HHhcccccCCCcEEEEEecCC-eEEEE
Confidence 994 4444443 3455899986543322 34568999999998 73 2 3468999999988 99999
Q ss_pred CCCe
Q psy13373 434 LNIA 437 (525)
Q Consensus 434 IpGA 437 (525)
+|+-
T Consensus 314 ~~~g 317 (339)
T PRK07688 314 FKDG 317 (339)
T ss_pred EcCC
Confidence 9843
No 7
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=1.8e-52 Score=413.87 Aligned_cols=239 Identities=45% Similarity=0.748 Sum_probs=226.2
Q ss_pred CCCHHHHhhhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCC
Q psy13373 124 KFSKDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTI 203 (525)
Q Consensus 124 ~l~~~~~~rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~di 203 (525)
.||+++++||+||++++.||.++|++|++++|+|||+||+|++++++|+++|||+|+|+|+|.|+.+||+||+||+++||
T Consensus 4 ~l~~~~~~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dv 83 (245)
T PRK05690 4 ELSDEEMLRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATI 83 (245)
T ss_pred CCCHHHHHHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceEE
Q psy13373 204 GQPKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLC 283 (525)
Q Consensus 204 G~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~ 283 (525)
|++|+++++++|+++||+++|+++...+++++..++++++|+||+|+|++..|.+++++|+++++|+|++++.|+.|++.
T Consensus 84 G~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~ 163 (245)
T PRK05690 84 GQPKVESARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIRMEGQVT 163 (245)
T ss_pred CChHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeeccCCceEE
Confidence 99999999999999999999999999998877788999999999999999999999999999999999999999999999
Q ss_pred EEecCC-CCceeecCCCCCCCCCCCCcCCCCcccchhHHHHHHHHHHHHHHHhCC-CCC-CeEEEEEcCCCeeEEeeecC
Q psy13373 284 VYNYKG-GPCYRCIYPVPPPAETVGTCGDNGVLGPVPGVMGTLQAVETIKLLIGL-PVM-DKLLVYDAELSKFLSVKLRK 360 (525)
Q Consensus 284 v~~~~~-~~c~~c~~~~~~~~~~~~~c~~~~~~~~~~~ivg~~~a~e~lk~l~g~-~~l-~~~~~~d~~~~~~~~~~l~~ 360 (525)
++.|+. ++||+|+++..+... ..|.+.|+++|+++++|+++|+|++|+|+|. +++ ++++.||+.+++|+.+++.
T Consensus 164 ~~~~~~~~~c~~c~~~~~~~~~--~~~~~~gv~~~~~~~~~~~~a~e~ik~l~g~~~~l~g~l~~~d~~~~~~~~~~~~- 240 (245)
T PRK05690 164 VFTYQDDEPCYRCLSRLFGENA--LTCVEAGVMAPLVGVIGSLQAMEAIKLLTGYGEPLSGRLLLYDAMTMQFREMKLK- 240 (245)
T ss_pred EEecCCCCceeeeccCCCCCCC--CCcccCCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEEEEEEcC-
Confidence 998764 799999998754422 3799999999999999999999999999999 777 9999999999999999995
Q ss_pred CCCCC
Q psy13373 361 KKEDC 365 (525)
Q Consensus 361 r~p~C 365 (525)
|+|+|
T Consensus 241 ~~~~C 245 (245)
T PRK05690 241 RDPGC 245 (245)
T ss_pred CCcCC
Confidence 89999
No 8
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=4.5e-52 Score=428.24 Aligned_cols=275 Identities=30% Similarity=0.502 Sum_probs=249.4
Q ss_pred hhhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCC--CcHH
Q psy13373 131 ERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIG--QPKV 208 (525)
Q Consensus 131 ~rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG--~~Ka 208 (525)
+||+||++++.||.++|++|++++|+|||+||+|+++|++|+++|||+|+|+|+|.|+.+||+||+||+++|+| ++||
T Consensus 3 ~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka 82 (338)
T PRK12475 3 ERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKA 82 (338)
T ss_pred chhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHH
Confidence 49999999988999999999999999999999999999999999999999999999999999999999999985 8999
Q ss_pred HHHHHHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceEEEEecC
Q psy13373 209 TSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCVYNYK 288 (525)
Q Consensus 209 ~~~~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~v~~~~ 288 (525)
++++++|+++||+++|+++...++.++..++++++|+||+|+|+++.+.++|++|+++++|+|++++.|+.|++.++.|+
T Consensus 83 ~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~~G~~~~~~P~ 162 (338)
T PRK12475 83 IAAKEHLRKINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGSYGVTYTIIPG 162 (338)
T ss_pred HHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEEEEEEECCC
Confidence 99999999999999999999888877888899999999999999999999999999999999999999999999999999
Q ss_pred CCCceeecCCCCCCCCCCCCcCCCCcccchhHHHHHHHHHHHHHHHhCC-CCC-CeEEEEEcCCCeeEEeeecC-CCCCC
Q psy13373 289 GGPCYRCIYPVPPPAETVGTCGDNGVLGPVPGVMGTLQAVETIKLLIGL-PVM-DKLLVYDAELSKFLSVKLRK-KKEDC 365 (525)
Q Consensus 289 ~~~c~~c~~~~~~~~~~~~~c~~~~~~~~~~~ivg~~~a~e~lk~l~g~-~~l-~~~~~~d~~~~~~~~~~l~~-r~p~C 365 (525)
.+|||+|+++..+... ..|...|+++|+++++|+++|.|+||+|+|. +.+ ++++.||.++++++.+++.. |+|+|
T Consensus 163 ~tpC~~Cl~~~~p~~~--~~c~~~Gvl~p~v~~iaslqa~EalK~L~g~~~~l~~~Ll~~D~~~~~~~~~~~~~~k~p~C 240 (338)
T PRK12475 163 KTPCLRCLMEHVPVGG--ATCDTAGIIQPAVQIVVAYQVTEALKILVEDFEALRETFLSFDIWNNQNMSIKVNKQKKDTC 240 (338)
T ss_pred CCCCHHHhcCCCCCCC--CCCccCCcCchHHHHHHHHHHHHHHHHHhCCCCCCcCeEEEEECCCCeEEEEEeccCCCCCC
Confidence 9999999998754432 4699999999999999999999999999998 777 99999999999999999952 59999
Q ss_pred -ccC-CCCcccc-----ccchhhccccCCCCCCCccCCCCCcccChhhhHHHHHh
Q psy13373 366 -VCA-HPADTQL-----VDYEVFCSSRANDKTPDISILDPTEHLTALDYRDEFLA 413 (525)
Q Consensus 366 -~C~-~~~~~~l-----~~y~~~cg~~~~~~~~~~~~~~~~~~is~~el~~~~l~ 413 (525)
+|+ ++.++.+ +.+..+||+.+....+ .....++++++.++ +.
T Consensus 241 p~Cg~~~~~~~l~~~~~~~~~~LCgr~~vq~~~-----~~~~~~~~~~~~~~-~~ 289 (338)
T PRK12475 241 PSCGLTRTYPSLTFENQTKTEVLCGRNTVQIRP-----GVRRRLNLEEIKKR-LQ 289 (338)
T ss_pred CcCCCCCcccccccccCCCeeeccCCceeeeec-----CccCccCHHHHHHH-Hh
Confidence 994 4454443 5788999988755443 33468899999888 64
No 9
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=3e-51 Score=403.51 Aligned_cols=235 Identities=45% Similarity=0.747 Sum_probs=219.1
Q ss_pred HhhhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHH
Q psy13373 130 TERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVT 209 (525)
Q Consensus 130 ~~rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~ 209 (525)
++||+||++++++|.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+||+++..+|||++|++
T Consensus 2 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~ 81 (240)
T TIGR02355 2 MLRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVE 81 (240)
T ss_pred ccceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHH
Confidence 46999999997788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceEEEEec-C
Q psy13373 210 SAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCVYNY-K 288 (525)
Q Consensus 210 ~~~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~v~~~-~ 288 (525)
+++++|+++||+++|++++..++.++..++++++|+||+|+|++.+|.++|++|+++++|+|+++..|+.|++.++.+ +
T Consensus 82 ~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~~~~~ 161 (240)
T TIGR02355 82 SAKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEGQVSVFTYQD 161 (240)
T ss_pred HHHHHHHHHCCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEeEEEEEecCC
Confidence 999999999999999999999988888889999999999999999999999999999999999999999999987763 3
Q ss_pred CCCceeecCCCCCCCCCCCCcCCCCcccchhHHHHHHHHHHHHHHHhCC-CCC-CeEEEEEcCCCeeEEeeecCCCCCC-
Q psy13373 289 GGPCYRCIYPVPPPAETVGTCGDNGVLGPVPGVMGTLQAVETIKLLIGL-PVM-DKLLVYDAELSKFLSVKLRKKKEDC- 365 (525)
Q Consensus 289 ~~~c~~c~~~~~~~~~~~~~c~~~~~~~~~~~ivg~~~a~e~lk~l~g~-~~l-~~~~~~d~~~~~~~~~~l~~r~p~C- 365 (525)
.++||+|+++..+. ....|...|+++|+++++|+++|+|++|+|+|. +++ ++++.||+.+++|+.+++. |+|+|
T Consensus 162 ~~~c~~C~~~~~~~--~~~~~~~~gv~~p~~~~~~~~~a~e~ik~l~g~~~~l~g~ll~~d~~~~~~~~~~~~-~~~~C~ 238 (240)
T TIGR02355 162 GEPCYRCLSRLFGE--NALSCVEAGVMAPVVGVVGSLQAMEAIKVLAGIGKPLSGKILMIDAMTMSFREMKLP-KNPTCP 238 (240)
T ss_pred CCCccccccccCCC--CCCCccccCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEEEEEecc-CCccCC
Confidence 57999999754432 223688899999999999999999999999999 778 9999999999999999995 89999
Q ss_pred cc
Q psy13373 366 VC 367 (525)
Q Consensus 366 ~C 367 (525)
+|
T Consensus 239 ~C 240 (240)
T TIGR02355 239 VC 240 (240)
T ss_pred CC
Confidence 98
No 10
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=7.6e-50 Score=419.19 Aligned_cols=261 Identities=46% Similarity=0.842 Sum_probs=242.9
Q ss_pred CCCCHHHHhhhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCC
Q psy13373 123 SKFSKDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHT 202 (525)
Q Consensus 123 ~~l~~~~~~rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~d 202 (525)
..++.++.+||+||+.++.||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+++||+||++++++|
T Consensus 106 ~~~s~~~~~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~d 185 (376)
T PRK08762 106 RLLTDEQDERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDR 185 (376)
T ss_pred cCCCHHHHHHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhh
Confidence 46888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceE
Q psy13373 203 IGQPKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQL 282 (525)
Q Consensus 203 iG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v 282 (525)
||++|+++++++|+++||++++..+...++.++..++++++|+||+|+|++..|.++|++|+++++|+|++++.|+.|++
T Consensus 186 iG~~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g~~g~v 265 (376)
T PRK08762 186 VGQPKVDSAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFRFEGQV 265 (376)
T ss_pred CCCcHHHHHHHHHHHHCCCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEE
Confidence 99999999999999999999999999888887778889999999999999999999999999999999999999999999
Q ss_pred EEEecCC----CCceeecCCCCCCCCCCCCcCCCCcccchhHHHHHHHHHHHHHHHhCC-CCC-CeEEEEEcCCCeeEEe
Q psy13373 283 CVYNYKG----GPCYRCIYPVPPPAETVGTCGDNGVLGPVPGVMGTLQAVETIKLLIGL-PVM-DKLLVYDAELSKFLSV 356 (525)
Q Consensus 283 ~v~~~~~----~~c~~c~~~~~~~~~~~~~c~~~~~~~~~~~ivg~~~a~e~lk~l~g~-~~l-~~~~~~d~~~~~~~~~ 356 (525)
.++.|+. ++||+|+++..+.......|...|+++|+++++|+++|+|++|+|+|. +++ ++++.||+.+++|+.+
T Consensus 266 ~~~~p~~~~~~~~c~~c~~~~~~~~~~~~~~~~~gv~g~~~~~~~~~~a~e~~k~l~g~~~~~~~~~~~~d~~~~~~~~~ 345 (376)
T PRK08762 266 SVFDAGRQRGQAPCYRCLFPEPPPPELAPSCAEAGVLGVLPGVIGLLQATEAIKLLLGIGDPLTGRLLTFDALAMRFREL 345 (376)
T ss_pred EEEeCCCCCCCCCCHhhcCCCCCCcccCCCCccCCcchhhHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEEE
Confidence 9988765 899999998766555567899999999999999999999999999999 777 9999999999999999
Q ss_pred eecCCCCCC-cc-CCCCccccccchhhccc
Q psy13373 357 KLRKKKEDC-VC-AHPADTQLVDYEVFCSS 384 (525)
Q Consensus 357 ~l~~r~p~C-~C-~~~~~~~l~~y~~~cg~ 384 (525)
++. |+|.| +| .++.++...+|..||+.
T Consensus 346 ~~~-~~~~C~~C~~~~~~~~~~~~~~~~~~ 374 (376)
T PRK08762 346 RLP-PDPHCPVCAPGRPFPGYIDYAAFCAG 374 (376)
T ss_pred ecc-CCCCCCCCCCCCCcCcccchhhhhCC
Confidence 995 99999 99 43456666677788854
No 11
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=9e-50 Score=397.24 Aligned_cols=227 Identities=27% Similarity=0.394 Sum_probs=214.1
Q ss_pred HhhhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHH
Q psy13373 130 TERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVT 209 (525)
Q Consensus 130 ~~rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~ 209 (525)
.+||+||+.+ +|.++|+||++++|+||||||+||+++++|+++|||+|+|+|+|.|+.+||+||++++.+|||++|++
T Consensus 7 ~~~ysRq~~~--iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve 84 (287)
T PRK08223 7 DEAFCRNLGW--ITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAE 84 (287)
T ss_pred HHHHhhhhhh--cCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHH
Confidence 3589999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEeecCCCH--HHHHHHHHHhHhcCCcEEEecccCccceEEEEec
Q psy13373 210 SAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNA--PTRYLLNDACLREGRPLVSASALGLEGQLCVYNY 287 (525)
Q Consensus 210 ~~~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~--~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~v~~~ 287 (525)
+++++|+++||+++|++++..+++++..++++++|+||||+|++ .+|+++|+.|+++++|+|++++.|+.|++.++.|
T Consensus 85 ~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~gqv~v~~p 164 (287)
T PRK08223 85 VLAEMVRDINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGMGTALLVFDP 164 (287)
T ss_pred HHHHHHHHHCCCCEEEEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCCeEEEEEEcC
Confidence 99999999999999999999999999999999999999999986 8999999999999999999999999999999987
Q ss_pred CCCCceeecCCC---CCC--------CCCCCCcCCCCcc----------------cchhHHHHHHHHHHHHHHHhCC-CC
Q psy13373 288 KGGPCYRCIYPV---PPP--------AETVGTCGDNGVL----------------GPVPGVMGTLQAVETIKLLIGL-PV 339 (525)
Q Consensus 288 ~~~~c~~c~~~~---~~~--------~~~~~~c~~~~~~----------------~~~~~ivg~~~a~e~lk~l~g~-~~ 339 (525)
+ ++||+|+|+. +++ ++..++|.+.|++ +++++++|+++|.|+||+|+|. +.
T Consensus 165 ~-~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~gvl~~~~~~~~~~~~~p~~g~~~g~~g~~~a~E~ik~l~g~g~~ 243 (287)
T PRK08223 165 G-GMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRGYLADPSRVDLENRTGPSTGLACQLCAGVVATEVLKILLGRGRV 243 (287)
T ss_pred C-CCchhhhcCCCCCCCchhhhcccCCcCCCccccCCccccccccccccccCCCccchHHHHHHHHHHHHHHHHhCCCCc
Confidence 5 8999999988 443 2456799999999 9999999999999999999999 66
Q ss_pred -C-CeEEEEEcCCCeeEEeeec
Q psy13373 340 -M-DKLLVYDAELSKFLSVKLR 359 (525)
Q Consensus 340 -l-~~~~~~d~~~~~~~~~~l~ 359 (525)
+ +++++||+.+++|.+..++
T Consensus 244 ~~~~~~~~~d~~~~~~~~~~~~ 265 (287)
T PRK08223 244 YAAPWFHQFDAYRSRYVRTWRP 265 (287)
T ss_pred CCCCeEEEEEcCCceEEEEEec
Confidence 3 8999999999999998875
No 12
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-48 Score=382.90 Aligned_cols=228 Identities=40% Similarity=0.590 Sum_probs=214.4
Q ss_pred CCCHHHHhhhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCC
Q psy13373 124 KFSKDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTI 203 (525)
Q Consensus 124 ~l~~~~~~rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~di 203 (525)
+||+.|.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+||+++..+|+
T Consensus 1 ~l~~~~~~ry~Rq~~~--~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dv 78 (231)
T PRK08328 1 MLSERELERYDRQIMI--FGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDL 78 (231)
T ss_pred CCCHHHHHHHhhHHHh--cCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhc
Confidence 3688899999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-cHHHHHHHHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceE
Q psy13373 204 GQ-PKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQL 282 (525)
Q Consensus 204 G~-~Ka~~~~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v 282 (525)
|+ +|+++++++|+++||+++|+++...+++++..++++++|+||+|+|++.+|.+++++|+++++|+|++++.|+.|++
T Consensus 79 G~~~k~~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~v 158 (231)
T PRK08328 79 GKNPKPLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQV 158 (231)
T ss_pred CchHHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEEE
Confidence 99 59999999999999999999999888887778899999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCceeecCCCCCCCCCCCCcCCCCcccchhHHHHHHHHHHHHHHHhCC-CCC-CeEEEEEcCCCeeEEeee
Q psy13373 283 CVYNYKGGPCYRCIYPVPPPAETVGTCGDNGVLGPVPGVMGTLQAVETIKLLIGL-PVM-DKLLVYDAELSKFLSVKL 358 (525)
Q Consensus 283 ~v~~~~~~~c~~c~~~~~~~~~~~~~c~~~~~~~~~~~ivg~~~a~e~lk~l~g~-~~l-~~~~~~d~~~~~~~~~~l 358 (525)
.++.|+.++||+|+++..+. .|...|+++|+++++|+++|+|++|+|+|. +++ ++++.||+.+++|+.+++
T Consensus 159 ~~~~p~~~~c~~~~~~~~~~-----~~~~~~~~~~~~~ii~~~~a~e~~k~l~g~~~~~~~~l~~~d~~~~~~~~~~~ 231 (231)
T PRK08328 159 TTIVPGKTKRLREIFPKVKK-----KKGKFPILGATAGVIGSIQAMEVIKLITGYGEPLLNKLLIVDLANNVFEVVEL 231 (231)
T ss_pred EEECCCCCCCHHHhCCCCCC-----ccccCCcCchHHHHHHHHHHHHHHHHHhCCCCcccCeEEEEECCCCEEEEeeC
Confidence 99999989999999986432 355678999999999999999999999999 777 999999999999988753
No 13
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=1.1e-47 Score=376.63 Aligned_cols=226 Identities=54% Similarity=0.942 Sum_probs=213.4
Q ss_pred hhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHH
Q psy13373 132 RYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSA 211 (525)
Q Consensus 132 rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~ 211 (525)
|||||++++.||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+++||+||+|+..+|+|++|++++
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAA 80 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceEEEEecCCCC
Q psy13373 212 KRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCVYNYKGGP 291 (525)
Q Consensus 212 ~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~v~~~~~~~ 291 (525)
+++|+++||+++|+.++..++.++..++++++|+||+|+|++..+.+++++|+++++|+|++++.|+.|++.++.|+.++
T Consensus 81 ~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~~g~v~~~~p~~~~ 160 (228)
T cd00757 81 AERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQVTVFIPGEGP 160 (228)
T ss_pred HHHHHHhCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEECCCCCC
Confidence 99999999999999999988877778899999999999999999999999999999999999999999999988888899
Q ss_pred ceeecCCCCCCCCCCCCcCCCCcccchhHHHHHHHHHHHHHHHhCC-CCC-CeEEEEEcCCCeeEEeee
Q psy13373 292 CYRCIYPVPPPAETVGTCGDNGVLGPVPGVMGTLQAVETIKLLIGL-PVM-DKLLVYDAELSKFLSVKL 358 (525)
Q Consensus 292 c~~c~~~~~~~~~~~~~c~~~~~~~~~~~ivg~~~a~e~lk~l~g~-~~l-~~~~~~d~~~~~~~~~~l 358 (525)
||.|++...+..+ ...|...++++|+++++|++++.|++|+|+|. +++ ++++.||..+++|+++++
T Consensus 161 c~~c~~~~~~~~~-~~~~~~~~~~~~~~~~~a~l~a~e~i~~l~g~~~~~~~~~~~~d~~~~~~~~~~~ 228 (228)
T cd00757 161 CYRCLFPEPPPPG-VPSCAEAGVLGPLVGVIGSLQALEALKILLGIGEPLAGRLLLFDALSMSFRTLKL 228 (228)
T ss_pred CccccCCCCCCCC-CCccccCCcchhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCCCEEEEEeC
Confidence 9999997754432 35688899999999999999999999999999 667 999999999999998864
No 14
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=4.7e-46 Score=358.14 Aligned_cols=201 Identities=47% Similarity=0.833 Sum_probs=191.5
Q ss_pred hhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHH
Q psy13373 132 RYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSA 211 (525)
Q Consensus 132 rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~ 211 (525)
|||||++++.||.++|+||++++|+|+|+||+|++++++|+++||++|+|+|+|.|+++||+||+||+++|+|++|++++
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVA 80 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceEEEEecC-CC
Q psy13373 212 KRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCVYNYK-GG 290 (525)
Q Consensus 212 ~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~v~~~~-~~ 290 (525)
+++|+++||+++++.++..++.++..++++++|+||+|+|+++.+.+++++|+++++|+|++++.|+.|++.++.|+ .+
T Consensus 81 ~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g~~G~~~~~~p~~~~ 160 (202)
T TIGR02356 81 AQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVGFGGQLMVFDPGGEG 160 (202)
T ss_pred HHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCeEEEEEEeCCCCC
Confidence 99999999999999999988887778899999999999999999999999999999999999999999999999887 69
Q ss_pred CceeecCCCCCCCCCCCCcCCCCcccchhHHHHHHHHHHHHHHH
Q psy13373 291 PCYRCIYPVPPPAETVGTCGDNGVLGPVPGVMGTLQAVETIKLL 334 (525)
Q Consensus 291 ~c~~c~~~~~~~~~~~~~c~~~~~~~~~~~ivg~~~a~e~lk~l 334 (525)
+||+|+++.. ++....|...|+++|+++++|+++|+|++|+|
T Consensus 161 ~c~~c~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~e~~k~l 202 (202)
T TIGR02356 161 PCLRCLFPDI--ADTGPSCATAGVIGPVVGVIGSLQALEALKLL 202 (202)
T ss_pred CChhhcCCCC--cccCCCCccCCccchHHHHHHHHHHHHHHHhC
Confidence 9999999873 23356799999999999999999999999985
No 15
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=100.00 E-value=5.9e-44 Score=355.81 Aligned_cols=244 Identities=48% Similarity=0.837 Sum_probs=229.0
Q ss_pred CCCHHHHhhhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCC
Q psy13373 124 KFSKDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTI 203 (525)
Q Consensus 124 ~l~~~~~~rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~di 203 (525)
.++..++.||+||+.++++|.++|++|++++|+|+|+||+|++++++|+++|||+++|+|+|+|+.+||+||++|+.+|+
T Consensus 2 ~~~~~~~~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~di 81 (254)
T COG0476 2 MLSDEEIERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADV 81 (254)
T ss_pred CccHHHHHhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeeccccc
Confidence 46788999999999998888888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceEE
Q psy13373 204 GQPKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLC 283 (525)
Q Consensus 204 G~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~ 283 (525)
|++|++++++.++++||.+.+.++...++.++..+++..+|+|++|+|++..|+++|++|++.++|++++++.|+.|+++
T Consensus 82 g~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~~~~~g~~~ 161 (254)
T COG0476 82 GKPKAEVAAKALRKLNPLVEVVAYLERLDEENAEELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEGQVT 161 (254)
T ss_pred CCcHHHHHHHHHHHhCCCCeEEEeecccChhhHHHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeeeccceEEEE
Confidence 99999999999999999999999999999888889999999999999999999999999999999999999999999999
Q ss_pred EEecC-CCCceeecCCCCCCCCCCC-CcCCCCcccchhHHHHHHHHHHHHHHHhCCC--CC-CeEEEEEcCCC-eeEEee
Q psy13373 284 VYNYK-GGPCYRCIYPVPPPAETVG-TCGDNGVLGPVPGVMGTLQAVETIKLLIGLP--VM-DKLLVYDAELS-KFLSVK 357 (525)
Q Consensus 284 v~~~~-~~~c~~c~~~~~~~~~~~~-~c~~~~~~~~~~~ivg~~~a~e~lk~l~g~~--~l-~~~~~~d~~~~-~~~~~~ 357 (525)
++.|. .++||+|+++..+..+... .|.+.+++++.+++++++++.+++|+++|.+ ++ ++++.+|.... .|++.+
T Consensus 162 ~~~~~~~~~c~~~~~~~~~~~~~~~~~c~~~gv~~~~~~~~~~~~~~~~~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (254)
T COG0476 162 VIIPGDKTPCYRCLFPEKPPPGLVPTSCDEAGVLGPLVGVVGSLQALEAIKLLTGIGLEPLIGRLLLYDALDMERFRTLK 241 (254)
T ss_pred EEecCCCCCcccccCCCCCCccccccccccCCccccccchhhhHHHHHHHHHhcCCCccccccceeeeechhcccchhhh
Confidence 99998 5999999999988755554 4999999999999999999999999999983 66 99999999988 899998
Q ss_pred ecCCCCC-C-ccC
Q psy13373 358 LRKKKED-C-VCA 368 (525)
Q Consensus 358 l~~r~p~-C-~C~ 368 (525)
.. +++. | +|+
T Consensus 242 ~~-~~~~~~~~c~ 253 (254)
T COG0476 242 LR-RRPISCPVCG 253 (254)
T ss_pred cc-cCCCCCCcCC
Confidence 87 5555 9 884
No 16
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=1.5e-42 Score=332.12 Aligned_cols=191 Identities=26% Similarity=0.392 Sum_probs=179.4
Q ss_pred hhhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHH
Q psy13373 131 ERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTS 210 (525)
Q Consensus 131 ~rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~ 210 (525)
.|||||+++ ||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+||+||||++.+|+|++|+++
T Consensus 2 ~~Y~Rqi~l--~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a 79 (197)
T cd01492 2 ALYDRQIRL--WGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEA 79 (197)
T ss_pred chhhHHHHH--hCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHH
Confidence 589999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceEEEEecCCC
Q psy13373 211 AKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCVYNYKGG 290 (525)
Q Consensus 211 ~~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~v~~~~~~ 290 (525)
++++|+++||+++|+.+...+++ +..++++++|+||+|+|+...+..++++|+++++|+|++++.|+.|++++..
T Consensus 80 ~~~~L~~lNp~v~i~~~~~~~~~-~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~d~---- 154 (197)
T cd01492 80 SLERLRALNPRVKVSVDTDDISE-KPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFVFADL---- 154 (197)
T ss_pred HHHHHHHHCCCCEEEEEecCccc-cHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEEEEec----
Confidence 99999999999999999887763 4578899999999999999999999999999999999999999999986421
Q ss_pred CceeecCCCCCCCCCCCCcCCCCcccchhHHHHHHHHHHHHHHHhCC-CCCCeEEEEEcCCCe
Q psy13373 291 PCYRCIYPVPPPAETVGTCGDNGVLGPVPGVMGTLQAVETIKLLIGL-PVMDKLLVYDAELSK 352 (525)
Q Consensus 291 ~c~~c~~~~~~~~~~~~~c~~~~~~~~~~~ivg~~~a~e~lk~l~g~-~~l~~~~~~d~~~~~ 352 (525)
++|+++++|+++|+|++|+++|. +++++++.||..++.
T Consensus 155 ------------------------~~p~~~~~~~~~~~e~~k~~~~~~~~l~~~~~~d~~~~~ 193 (197)
T cd01492 155 ------------------------LAPVAAVVGGILAQDVINALSKRESPLNNFFVFDGETSE 193 (197)
T ss_pred ------------------------cccHHHHHHHHHHHHHHHHHhCCCCccCcEEEEECCCCc
Confidence 78999999999999999999999 667669999998764
No 17
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=100.00 E-value=7.9e-42 Score=348.85 Aligned_cols=228 Identities=15% Similarity=0.164 Sum_probs=206.2
Q ss_pred CCCHHHHhhhhhcccccc-cC-HHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCC
Q psy13373 124 KFSKDITERYSRQILLDQ-VG-VMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTH 201 (525)
Q Consensus 124 ~l~~~~~~rysRq~~l~~-~G-~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~ 201 (525)
.|+..+.+||+||+.+++ || .++|++|++++|+ +||+|+.++.+|++ |||+|+|+|+|.|+.|||+ ++|+.+
T Consensus 46 ~l~~~~~~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~ 119 (318)
T TIGR03603 46 TLTKFNLITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSKE 119 (318)
T ss_pred ccCHHHHHHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhChh
Confidence 478889999999999966 57 5589999999999 99999999999999 9999999999999999999 999999
Q ss_pred CCCCcHHHHHHHHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEeecCCCHHHHHH--HHHHhHhcCCcEEEecccCcc
Q psy13373 202 TIGQPKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYL--LNDACLREGRPLVSASALGLE 279 (525)
Q Consensus 202 diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~--l~~~~~~~~~p~i~~~~~g~~ 279 (525)
|||++|+++++++|.++||.++++. ..++++++|+||+|+|++..|.+ +|++|.+.++|+|+++..|+.
T Consensus 120 diG~~K~~~a~~~L~~lnp~v~i~~---------~~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav~g~~ 190 (318)
T TIGR03603 120 FILKKDIRDLTSNLDALELTKNVDE---------LKDLLKDYNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFIDGPF 190 (318)
T ss_pred hcCcHHHHHHHHHHHHhCCCCEEee---------HHHHhCCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEEccCE
Confidence 9999999999999999999999875 34688999999999999999976 999999999999999999999
Q ss_pred ceEEEEecCCCCceeecCCCC------------CC--CCCCCCcCCCCcccchhHHHHHHHHHHHHHHHhCC-C-CC-Ce
Q psy13373 280 GQLCVYNYKGGPCYRCIYPVP------------PP--AETVGTCGDNGVLGPVPGVMGTLQAVETIKLLIGL-P-VM-DK 342 (525)
Q Consensus 280 G~v~v~~~~~~~c~~c~~~~~------------~~--~~~~~~c~~~~~~~~~~~ivg~~~a~e~lk~l~g~-~-~l-~~ 342 (525)
|++.++.|+.++||+|+++.. +. ......|...|+++|+++++|+++|.|++ +++|. + .+ ++
T Consensus 191 Gqv~~~~P~~t~C~~Cl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~gp~~giigsl~a~Eai-~i~g~g~~~l~g~ 269 (318)
T TIGR03603 191 VFITCTLPPETGCFECLERRLLSRLDWRLYGVFTEYLVKAENNVSTAELIFPLLNIKKNLVVSEIF-AIGSLGTSKFEGR 269 (318)
T ss_pred EEEEEEeCCCCCcHHHccchhhcccccccccccccccCCCCCCCccCCeehhHHHHHHHHHHHHHH-HHhCCCCcccCCe
Confidence 999887787899999998721 00 11234788899999999999999999999 99987 4 45 99
Q ss_pred EEEEEcCCCeeEEeeecCCCCCC-ccC
Q psy13373 343 LLVYDAELSKFLSVKLRKKKEDC-VCA 368 (525)
Q Consensus 343 ~~~~d~~~~~~~~~~l~~r~p~C-~C~ 368 (525)
++.||+.+++++.+++. |+|.| +|+
T Consensus 270 ll~id~~t~~~~~~~l~-k~p~Cp~CG 295 (318)
T TIGR03603 270 LLSINLPTLEIQFQDIL-KQSCCSTCG 295 (318)
T ss_pred EEEEECCCCeEEEEecC-CCCCCcccC
Confidence 99999999999999995 89999 993
No 18
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=1.3e-41 Score=326.15 Aligned_cols=188 Identities=26% Similarity=0.399 Sum_probs=176.6
Q ss_pred hhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCC--CCCCCcHHH
Q psy13373 132 RYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTT--HTIGQPKVT 209 (525)
Q Consensus 132 rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~--~diG~~Ka~ 209 (525)
+||||+++ ||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+|++||+|++. +|+|++|++
T Consensus 1 ~y~Rqi~l--~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~ 78 (198)
T cd01485 1 LYDRQIRL--WGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAA 78 (198)
T ss_pred Cccceeec--cCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHH
Confidence 69999999 99999999999999999999999999999999999999999999999999999999998 899999999
Q ss_pred HHHHHHHhhCCCcEEEEeeecCC--cchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceEEEEec
Q psy13373 210 SAKRFISAINRNTIVHAYQTLLD--TSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCVYNY 287 (525)
Q Consensus 210 ~~~~~l~~lnp~v~v~~~~~~i~--~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~v~~~ 287 (525)
+++++|+++||+++|+++...++ .++..++++++|+||+|.|+...+..++++|+++++|+|++++.|+.|++++..
T Consensus 79 ~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~~~- 157 (198)
T cd01485 79 ASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIGYAFFDF- 157 (198)
T ss_pred HHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEEch-
Confidence 99999999999999999988775 455678899999999999999999999999999999999999999999986421
Q ss_pred CCCCceeecCCCCCCCCCCCCcCCCCcccchhHHHHHHHHHHHHHHHhCC-CCCCeEEEEEcCCC
Q psy13373 288 KGGPCYRCIYPVPPPAETVGTCGDNGVLGPVPGVMGTLQAVETIKLLIGL-PVMDKLLVYDAELS 351 (525)
Q Consensus 288 ~~~~c~~c~~~~~~~~~~~~~c~~~~~~~~~~~ivg~~~a~e~lk~l~g~-~~l~~~~~~d~~~~ 351 (525)
|+++++|+++|+|++|+++|. +++++++.||++++
T Consensus 158 -----------------------------p~~~~~~~~~~~e~~k~l~~~~~~~~~~~~~d~~~~ 193 (198)
T cd01485 158 -----------------------------PIAAFLGGVVAQEAIKSISGKFTPLNNLYIYDGFES 193 (198)
T ss_pred -----------------------------hHHHHHHHHHHHHHHHHHhCCCCccCcEEEEECccc
Confidence 699999999999999999999 66688999999865
No 19
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=5.4e-40 Score=328.88 Aligned_cols=209 Identities=26% Similarity=0.386 Sum_probs=184.8
Q ss_pred hhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHH
Q psy13373 132 RYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSA 211 (525)
Q Consensus 132 rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~ 211 (525)
.||||+++ ||.++|+||++++|+|+|+||||+++||||+++||++|+|+|+|.|+.+||+|||+++++|||++|++++
T Consensus 1 lYsRQl~~--~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~ 78 (286)
T cd01491 1 LYSRQLYV--LGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEAS 78 (286)
T ss_pred Ccccceec--cCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHH
Confidence 49999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceEEEEecCCCC
Q psy13373 212 KRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCVYNYKGGP 291 (525)
Q Consensus 212 ~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~v~~~~~~~ 291 (525)
+++|+++||+++|+++...++ .+++.++|+||+|.++...+..+|++|+++++|+|.+++.|++|++++ +.++
T Consensus 79 ~~~L~eLNp~V~V~~~~~~~~----~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~~G~vf~---dfg~ 151 (286)
T cd01491 79 QARLAELNPYVPVTVSTGPLT----TDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGLFGSIFC---DFGD 151 (286)
T ss_pred HHHHHHHCCCCEEEEEeccCC----HHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccccEEEEEe---cCCC
Confidence 999999999999999987643 467899999999999999999999999999999999999999999977 5679
Q ss_pred ceeecCCCCCCCCCC----------------------------------------CCcCC--------------------
Q psy13373 292 CYRCIYPVPPPAETV----------------------------------------GTCGD-------------------- 311 (525)
Q Consensus 292 c~~c~~~~~~~~~~~----------------------------------------~~c~~-------------------- 311 (525)
||.|+.++...+... ..+..
T Consensus 152 ~f~~~d~~ge~p~~~~i~~I~~~~~g~V~~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~v~~~~~~~f~i~d~~~~~ 231 (286)
T cd01491 152 EFTVYDPNGEEPKSGMISSISKDNPGVVTCLDETRHGFEDGDYVTFSEVEGMTELNGCEPRKIKVKGPYTFSIGDTSSFS 231 (286)
T ss_pred eEEEeCCCCCcCCccceeeeecCCceEEEEECCcccCCcCCCEEEEeccCcchhhCCCccEEEEECCCCeEEECcCcCcC
Confidence 999986442211100 00000
Q ss_pred ----CCc-----ccchhHHHHHHHHHHHHHHHhCC-CCCCeEEEEEcC
Q psy13373 312 ----NGV-----LGPVPGVMGTLQAVETIKLLIGL-PVMDKLLVYDAE 349 (525)
Q Consensus 312 ----~~~-----~~~~~~ivg~~~a~e~lk~l~g~-~~l~~~~~~d~~ 349 (525)
.|. ++|+.+++|+++|+|+||.++++ .|+.+.+.||..
T Consensus 232 ~y~~gG~~~qvK~~~~~~~~g~~~~q~~~~~~~~~~~p~~q~~~~~~~ 279 (286)
T cd01491 232 EYIRGGIVTQVKLSPMAAFFGGLAAQEVLKACSGKFTPLKQWLYFDAL 279 (286)
T ss_pred ccccCcEEEEEecccHHHHhhhHHHHHHHHHcCCCCCceeeEEEecHH
Confidence 011 78999999999999999999999 888889999976
No 20
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=4.8e-39 Score=322.44 Aligned_cols=212 Identities=23% Similarity=0.440 Sum_probs=187.4
Q ss_pred cEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecCCc
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDT 233 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~ 233 (525)
+|+|||+||+|++++|+|+++|||+|+|+|.|.|+.+||+|||||+.+|||++||++++++|+++||+++|+++...+.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred chHhHhhccCCeEeecCCCHHHHHHHHHHhHhc--------CCcEEEecccCccceEEEEecCCCCceeecCCCCCCCCC
Q psy13373 234 SNACDIIRRYDVVVDACDNAPTRYLLNDACLRE--------GRPLVSASALGLEGQLCVYNYKGGPCYRCIYPVPPPAET 305 (525)
Q Consensus 234 ~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~--------~~p~i~~~~~g~~G~v~v~~~~~~~c~~c~~~~~~~~~~ 305 (525)
. ..++++++|+||+|+|+.++|.++|+.|.+. ++|+|++++.|+.|+++++.|+.++||+|.+...|+...
T Consensus 81 ~-~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p~~~~ 159 (291)
T cd01488 81 K-DEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQVT 159 (291)
T ss_pred h-hHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccCCCCCCCCCC
Confidence 4 4689999999999999999999999987654 599999999999999999999999999998754332222
Q ss_pred CCCcC------------C-------------------------------------------------------CCcccch
Q psy13373 306 VGTCG------------D-------------------------------------------------------NGVLGPV 318 (525)
Q Consensus 306 ~~~c~------------~-------------------------------------------------------~~~~~~~ 318 (525)
.+.|. + -++++++
T Consensus 160 ~p~Cti~~~P~~~~hci~~a~~~~~~~~~~~~~~~~d~~~~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~st 239 (291)
T cd01488 160 FPLCTIANTPRLPEHCIEYASLIQWPKEFPFVPLDGDDPEHIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVAST 239 (291)
T ss_pred CCcccccCCCCCcchheeeeeeeecccccCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCccCch
Confidence 22120 0 1458899
Q ss_pred hHHHHHHHHHHHHHHHhCC-CCCCeEEEEEcCCCeeE-EeeecCCCCCC-cc
Q psy13373 319 PGVMGTLQAVETIKLLIGL-PVMDKLLVYDAELSKFL-SVKLRKKKEDC-VC 367 (525)
Q Consensus 319 ~~ivg~~~a~e~lk~l~g~-~~l~~~~~~d~~~~~~~-~~~l~~r~p~C-~C 367 (525)
++++|+..+.|++|++++. +.++++++|.+.++-+. ++++ .|+|+| +|
T Consensus 240 naiia~~~~~~~~k~~~~~~~~~~n~~~~~g~~g~~~~~~~~-~~~~~c~~c 290 (291)
T cd01488 240 NAIIAAACCLEALKIATDCYENLNNYLMYNGVDGCYTYTFEH-ERKEDCPVC 290 (291)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCceEEEecCCceEEEEEEE-eeCCCCCCC
Confidence 9999999999999999998 76699999999988875 5555 699999 99
No 21
>PRK14852 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=340.80 Aligned_cols=225 Identities=22% Similarity=0.314 Sum_probs=200.1
Q ss_pred hhhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHH
Q psy13373 131 ERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTS 210 (525)
Q Consensus 131 ~rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~ 210 (525)
.||+||+.+ ||.++|+||++++|+||||||+|++++++|+++|||+|+|+|+|.|+.+|||||++++.+|||++|+++
T Consensus 313 ~ry~Rqi~l--ig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaev 390 (989)
T PRK14852 313 IAFSRNLGL--VDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDV 390 (989)
T ss_pred HHhhchHhh--cCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHH
Confidence 479999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEeecCCCH--HHHHHHHHHhHhcCCcEEEecccCccceEEEEecC
Q psy13373 211 AKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNA--PTRYLLNDACLREGRPLVSASALGLEGQLCVYNYK 288 (525)
Q Consensus 211 ~~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~--~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~v~~~~ 288 (525)
++++|+++||+++|++++..++.++..++++++|+||+|+|++ ..+..+++.|+++++|+|++++.|+.|++.++.|+
T Consensus 391 aa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~g~v~v~~p~ 470 (989)
T PRK14852 391 MTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYSCALLVFMPG 470 (989)
T ss_pred HHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccCeeEEEEcCC
Confidence 9999999999999999999999999999999999999999985 45778888899999999999999999999999875
Q ss_pred CCCceeecCCCCCCCCC-------------------CCC-------cCCCCcccchhHHHHHHHHHHHHHHHhCC-CCC-
Q psy13373 289 GGPCYRCIYPVPPPAET-------------------VGT-------CGDNGVLGPVPGVMGTLQAVETIKLLIGL-PVM- 340 (525)
Q Consensus 289 ~~~c~~c~~~~~~~~~~-------------------~~~-------c~~~~~~~~~~~ivg~~~a~e~lk~l~g~-~~l- 340 (525)
++||.|+|+-.+.... ... -...+.++..+.+.|++.|.+++|+++|. +..
T Consensus 471 -~~~~~~~f~~~~~~p~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~~~~~ 549 (989)
T PRK14852 471 -GMNFDSYFGIDDDTPPMEGYLRFGMGLAPRPAHLGYMDRRFVSLHDRRGPSLDIACHLCAGMAATEAVRILLHRRGIRP 549 (989)
T ss_pred -CCCHHHhCCCCCCCchHhhhhhhhccCCcchhhhcccCcccccccccCCCchHHHHHHhHHHHHHHHHHHHhCCCcccc
Confidence 6999999966432110 001 12346688888999999999999999999 444
Q ss_pred -CeEEEEEcCCCeeEEeee
Q psy13373 341 -DKLLVYDAELSKFLSVKL 358 (525)
Q Consensus 341 -~~~~~~d~~~~~~~~~~l 358 (525)
...+.||..++.+.+-.+
T Consensus 550 ~p~~~qfd~~~~~~~~~~~ 568 (989)
T PRK14852 550 VPYFRQFDPLTGRHVRGRL 568 (989)
T ss_pred Ccchhccchhhcccceeee
Confidence 889999999888765544
No 22
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=100.00 E-value=2.9e-36 Score=291.84 Aligned_cols=196 Identities=32% Similarity=0.357 Sum_probs=171.5
Q ss_pred hhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHH
Q psy13373 133 YSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAK 212 (525)
Q Consensus 133 ysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~ 212 (525)
+.++... ||.++|++|++++|+|||+||+|++++++|+++||++|+|+|.|.|+.+||+||+++ .+|+|++|+++++
T Consensus 11 ~~~~~~~--~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a~ 87 (212)
T PRK08644 11 EAMLASR--HTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEALK 87 (212)
T ss_pred HHHHHhh--cCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHHH
Confidence 3344434 999999999999999999999999999999999999999999999999999999876 7899999999999
Q ss_pred HHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhc-CCcEEEecccCccceEEEEecCC--
Q psy13373 213 RFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLRE-GRPLVSASALGLEGQLCVYNYKG-- 289 (525)
Q Consensus 213 ~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~-~~p~i~~~~~g~~G~v~v~~~~~-- 289 (525)
++|+++||+++++.++..++.++..++++++|+||+|+|++..|..+++.|+++ ++|+|.++..+..|++..+.+..
T Consensus 88 ~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~~~~~~~~~~~ 167 (212)
T PRK08644 88 ENLLEINPFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYGDSNSIKTRRIG 167 (212)
T ss_pred HHHHHHCCCCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccCCceEEEecCCC
Confidence 999999999999999999988877789999999999999999999999999998 99999997777777766554432
Q ss_pred CCceeecCCCCCCCCCCCCcCCCCcccchhHHHHHHHHHHHHHHHhCC
Q psy13373 290 GPCYRCIYPVPPPAETVGTCGDNGVLGPVPGVMGTLQAVETIKLLIGL 337 (525)
Q Consensus 290 ~~c~~c~~~~~~~~~~~~~c~~~~~~~~~~~ivg~~~a~e~lk~l~g~ 337 (525)
..||.| +..+ ...|...|+++|+++++|+++|.|+||+|+|.
T Consensus 168 ~~~~~~--~~~~----~~~~~~~gv~~~~~~~i~~~~a~ealk~l~~~ 209 (212)
T PRK08644 168 KNFYIV--GDFV----TEAKPGNPLMAPRVNIAAAHQANLVLRLILGE 209 (212)
T ss_pred CCeeEC--CCCC----cccCCCCCccchHHHHHHHHHHHHHHHHHhCC
Confidence 334422 2211 23578889999999999999999999999986
No 23
>PRK14851 hypothetical protein; Provisional
Probab=100.00 E-value=2.5e-36 Score=334.17 Aligned_cols=231 Identities=23% Similarity=0.340 Sum_probs=204.4
Q ss_pred CHHHHhhhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCC
Q psy13373 126 SKDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQ 205 (525)
Q Consensus 126 ~~~~~~rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~ 205 (525)
.+.+.+||+||+.+ ||.++|++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|+++|||||++++.+|||+
T Consensus 19 ~~~~~~ry~R~~~l--~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~ 96 (679)
T PRK14851 19 AEYREAAFSRNIGL--FTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGR 96 (679)
T ss_pred HHHHHHHhhhhHHh--cCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCC
Confidence 44566799999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEeecCCC--HHHHHHHHHHhHhcCCcEEEecccCccceEE
Q psy13373 206 PKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDN--APTRYLLNDACLREGRPLVSASALGLEGQLC 283 (525)
Q Consensus 206 ~Ka~~~~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~--~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~ 283 (525)
+|+++++++|+++||+++|++++..++.++..++++++|+||+|+|+ +..+.+|++.|+++++|+|++++.|+.|++.
T Consensus 97 ~Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~ 176 (679)
T PRK14851 97 PKLAVMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSAML 176 (679)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccceEE
Confidence 99999999999999999999999999988888999999999999997 4678899999999999999999999999999
Q ss_pred EEecCCCCceeecCCCCCCCC-------------------------CC-CCcCCCCcccchhHHHHHHHHHHHHHHHhCC
Q psy13373 284 VYNYKGGPCYRCIYPVPPPAE-------------------------TV-GTCGDNGVLGPVPGVMGTLQAVETIKLLIGL 337 (525)
Q Consensus 284 v~~~~~~~c~~c~~~~~~~~~-------------------------~~-~~c~~~~~~~~~~~ivg~~~a~e~lk~l~g~ 337 (525)
++.|+ ++||.|+|...+... .+ .+-...+.+...+..++++.+.|++|+|.+.
T Consensus 177 ~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (679)
T PRK14851 177 VFTPQ-GMGFDDYFNIGGKMPEEQKYLRFAMGLAPRPTHIKYMDLSKVDLKGGKGPSLNIACQLCSGMAGTEAVRIILGK 255 (679)
T ss_pred EEcCC-CCCHhHhccCCCCCChHHHHHHHHhcCCCcchhhccCcHhhcCCccCcCCCccHHHHhhhhhHHHHHHHHhhcC
Confidence 99886 899999986533300 00 0112345577778889999999999999998
Q ss_pred -CCC--CeEEEEEcCCCeeEEeeec
Q psy13373 338 -PVM--DKLLVYDAELSKFLSVKLR 359 (525)
Q Consensus 338 -~~l--~~~~~~d~~~~~~~~~~l~ 359 (525)
+.. ..++.||..++++...++.
T Consensus 256 ~~~~~~p~~~~~d~~~~~~~~~~~~ 280 (679)
T PRK14851 256 GGLRPVPCYLQFDPFLQKLRKGRLS 280 (679)
T ss_pred CeeeccchhhhcchhhcceeEEEee
Confidence 332 8889999999988766654
No 24
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=2.4e-35 Score=298.82 Aligned_cols=145 Identities=30% Similarity=0.568 Sum_probs=138.5
Q ss_pred cEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecCCc
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDT 233 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~ 233 (525)
+|+|||+||+|+|++|+|+++|||+|+|+|.|.|+.+||+|||||+++|||++|+++++++|+++||+++|+++...+++
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred c-hHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceEEEEecCCCCceeecCC
Q psy13373 234 S-NACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCVYNYKGGPCYRCIYP 298 (525)
Q Consensus 234 ~-~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~v~~~~~~~c~~c~~~ 298 (525)
. ...++++++|+||+|.|+.+.|..+|++|+.+++|+|.+++.|+.|+++++.|+.++||.|...
T Consensus 81 ~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~ 146 (312)
T cd01489 81 PDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIKKGKTECYECQPK 146 (312)
T ss_pred ccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEcCCCCCccCCCCC
Confidence 3 3468899999999999999999999999999999999999999999999999999999999764
No 25
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=100.00 E-value=4.2e-35 Score=315.46 Aligned_cols=239 Identities=23% Similarity=0.353 Sum_probs=194.1
Q ss_pred CCCHHHHhh--------hhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcc
Q psy13373 124 KFSKDITER--------YSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQ 195 (525)
Q Consensus 124 ~l~~~~~~r--------ysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq 195 (525)
.|++..+.. +-|-..+|++|. ++|++++|+|+|+|||||++|++|+++|||+|+|||+|.|+.|||+||
T Consensus 305 ~mdP~~la~~avdlnlkLmkWRllP~l~~---ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ 381 (664)
T TIGR01381 305 EFDPKRLAERSVDLNLKLMKWRLHPDLQL---ERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQ 381 (664)
T ss_pred hcCHHHHHHHHHHHHHHHHhhhcCChhhH---HHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccc
Confidence 566654432 444445566655 899999999999999999999999999999999999999999999999
Q ss_pred cccCCCCC---CCcHHHHHHHHHHhhCCCcEEEEeeecC-------Cc----------chHhHhhccCCeEeecCCCHHH
Q psy13373 196 VIHTTHTI---GQPKVTSAKRFISAINRNTIVHAYQTLL-------DT----------SNACDIIRRYDVVVDACDNAPT 255 (525)
Q Consensus 196 ~l~~~~di---G~~Ka~~~~~~l~~lnp~v~v~~~~~~i-------~~----------~~~~~~~~~~dvVi~~~d~~~~ 255 (525)
++|+.+|+ |++||++++++|+++||+++++.+...+ ++ ++..++++++|+|++|+|++++
T Consensus 382 ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~es 461 (664)
T TIGR01381 382 SLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREA 461 (664)
T ss_pred cccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHH
Confidence 99999999 9999999999999999999999988774 33 2466789999999999999999
Q ss_pred HHHHHHHhHhcCCcEEEecccCccceEEEEe------------------cCCCCceeec---CCCCCCCCC--CCCcCCC
Q psy13373 256 RYLLNDACLREGRPLVSASALGLEGQLCVYN------------------YKGGPCYRCI---YPVPPPAET--VGTCGDN 312 (525)
Q Consensus 256 r~~l~~~~~~~~~p~i~~~~~g~~G~v~v~~------------------~~~~~c~~c~---~~~~~~~~~--~~~c~~~ 312 (525)
|++++.+|..+++|+|+++ .|+.|++.++. ....+||.|. +|..+.... -..|.
T Consensus 462 R~L~n~~c~~~~kplI~aA-lGfdg~lvmrhG~~~~~~~~~~~~~~~~~~~~~gCYfC~Dv~aP~~s~~~rtlDqqCt-- 538 (664)
T TIGR01381 462 RWLPTVLCSRHKKIAISAA-LGFDSYVVMRHGIGRSESVSDVSSSDSVPYSRLGCYFCNDVTAPGDSTTDRTLDQQCT-- 538 (664)
T ss_pred HHHHHHHHHHhCCCEEEEE-eccceEEEEEecccccccccccccccccCCCCCCccccCCCCCCCcccccccccccce--
Confidence 9999999999999999995 89999998761 1247899999 444333221 13575
Q ss_pred CcccchhHHHHHHHHHHHHHHHhCCC--------------CCC-eEEEEEcCCCeeEEeeec-CCCCCC-ccCC
Q psy13373 313 GVLGPVPGVMGTLQAVETIKLLIGLP--------------VMD-KLLVYDAELSKFLSVKLR-KKKEDC-VCAH 369 (525)
Q Consensus 313 ~~~~~~~~ivg~~~a~e~lk~l~g~~--------------~l~-~~~~~d~~~~~~~~~~l~-~r~p~C-~C~~ 369 (525)
|++|..+++|+++|.|+++.|+..| +++ --..+.+.-..|+.+.+. ++.+.| +|+.
T Consensus 539 -VtrPgv~~ias~~AvEll~~llqhp~~~~ap~~~~~~~~~lG~~Phqirg~l~~f~~~~~~~~~~~~C~aCs~ 611 (664)
T TIGR01381 539 -VTRPGTAMIASGLAVELLVSVLQHPLPSKTPASHDDNTTVLGALPHQIRGFLGRFQQILLSVKRFDQCVACSD 611 (664)
T ss_pred -EecchHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCCCccccCCceeeeehhhCeeeeecccCCCcccCCCH
Confidence 9999999999999999999999862 011 123444555556666555 678889 8954
No 26
>PRK07877 hypothetical protein; Provisional
Probab=100.00 E-value=5.7e-35 Score=323.97 Aligned_cols=220 Identities=24% Similarity=0.283 Sum_probs=190.1
Q ss_pred ccccccCCCCHHHH--hhhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCC-ceEEEEeCCcccccCCC
Q psy13373 117 WYGEVYSKFSKDIT--ERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGV-GTLGLADYDRVELSNLH 193 (525)
Q Consensus 117 ~~~~~~~~l~~~~~--~rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GV-g~i~lvD~d~V~~sNL~ 193 (525)
|...+++.+++++. .||+||+.+ ||.++|+||++++|+|||+| +||.+|.+|+++|| |+|+|+|+|.|+.||||
T Consensus 72 w~~~~v~~~~~~~~~~~r~~Rn~~~--ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLn 148 (722)
T PRK07877 72 WRRTVVHLLGPREFRAVRLDRNRNK--ITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLN 148 (722)
T ss_pred chhheeecCCHHHhhHHHhhchhhh--CCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccc
Confidence 56778899999998 799999999 99999999999999999997 99999999999996 99999999999999999
Q ss_pred cccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEe
Q psy13373 194 RQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSA 273 (525)
Q Consensus 194 Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~ 273 (525)
|| +++.+|+|++|+++++++|+++||+++|++++..++.++..++++++|+||||+|++.+|.++|+.|++++||+|++
T Consensus 149 Rq-~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~ 227 (722)
T PRK07877 149 RV-PAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMA 227 (722)
T ss_pred cc-cCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 98 57999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccceEE--E--EecCCCCceeecCCCCCCCCCC--------C------Cc------------------CCCCcccc
Q psy13373 274 SALGLEGQLC--V--YNYKGGPCYRCIYPVPPPAETV--------G------TC------------------GDNGVLGP 317 (525)
Q Consensus 274 ~~~g~~G~v~--v--~~~~~~~c~~c~~~~~~~~~~~--------~------~c------------------~~~~~~~~ 317 (525)
+..+ |++. . +.| .+|||+|+++..+..... + .+ ...+.++.
T Consensus 228 ~~~~--g~~~~e~~~~~p-~~pc~~cl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~s~~~~~~~~~~~pql~~ 304 (722)
T PRK07877 228 TSDR--GLLDVERFDLEP-DRPILHGLLGDIDAAKLAGLSTKDKVPHVLRILDAEALSARMAASLVEVDQTLSTWPQLAS 304 (722)
T ss_pred cCCC--CCcCcceeeeCC-CCceeeccCCCCChhhhccCChhccCcceeeeccccccCHHHHHHHHhccCccccCCchHH
Confidence 8655 7663 2 334 689999999874322100 0 00 12345777
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCC-CeE
Q psy13373 318 VPGVMGTLQAVETIKLLIGLPVM-DKL 343 (525)
Q Consensus 318 ~~~ivg~~~a~e~lk~l~g~~~l-~~~ 343 (525)
.+.+.|++.+..+.|+++|.+.. +++
T Consensus 305 ~~~~~~~~~~~~~~~i~l~~~~~sgr~ 331 (722)
T PRK07877 305 DVVLGAAAVAEAVRRIGLGEPLESGRV 331 (722)
T ss_pred HHHhhHHHHHHHHHHHHcCCcCCCCCE
Confidence 78888999999999999997322 444
No 27
>KOG2015|consensus
Probab=100.00 E-value=2e-34 Score=281.60 Aligned_cols=226 Identities=26% Similarity=0.482 Sum_probs=192.0
Q ss_pred cCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCC
Q psy13373 142 VGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRN 221 (525)
Q Consensus 142 ~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~ 221 (525)
-+.|..+-|.+.+|+|||+||||||++|||+++|++.+++||-|+++.+||||||+|++.|||++||+++++.+.+..|.
T Consensus 30 ~~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~ 109 (422)
T KOG2015|consen 30 PSEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPG 109 (422)
T ss_pred CCHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCC
Confidence 36678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeeecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHh---cC-------CcEEEecccCccceEEEEecCCCC
Q psy13373 222 TIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLR---EG-------RPLVSASALGLEGQLCVYNYKGGP 291 (525)
Q Consensus 222 v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~---~~-------~p~i~~~~~g~~G~v~v~~~~~~~ 291 (525)
+.|..+..++.+.. .++.++|++||++.|+++.|++||....+ .| +|+|++++.|+.|+++++.|+.++
T Consensus 110 ~~v~~h~~kIqd~~-~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~arvI~Pg~Ta 188 (422)
T KOG2015|consen 110 CVVVPHRQKIQDKP-ISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHARVIYPGITA 188 (422)
T ss_pred cEEeeeecchhcCC-HHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeEEEecCccH
Confidence 99999999887654 78999999999999999999999987533 23 699999999999999999999999
Q ss_pred ceeecCCCCCCCCCCCCcC--------------------------------------------------C----------
Q psy13373 292 CYRCIYPVPPPAETVGTCG--------------------------------------------------D---------- 311 (525)
Q Consensus 292 c~~c~~~~~~~~~~~~~c~--------------------------------------------------~---------- 311 (525)
|+.|...--++....+.|. +
T Consensus 189 CieCtldlyppqvs~P~CTiAntPRlpEHciEyv~liqwpe~~~~g~~~~gdd~~hI~wi~er~~eRA~ef~I~gv~~~l 268 (422)
T KOG2015|consen 189 CIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKLIQWPELNPFGVPLDGDDPEHIEWIVERSNERANEFNITGVTRRL 268 (422)
T ss_pred HHHhHHhhcCcccCcccceecCCCCCchHhhhhhhhhcchhhCccCCCCCCCCHHHHHHHHHHHHHHhhhcccccchHHh
Confidence 9999642111110000010 0
Q ss_pred --------CCcccchhHHHHHHHHHHHHHHHhCC-CCCCeEEEEEcCCCeeE-EeeecCCCCCC-ccCC
Q psy13373 312 --------NGVLGPVPGVMGTLQAVETIKLLIGL-PVMDKLLVYDAELSKFL-SVKLRKKKEDC-VCAH 369 (525)
Q Consensus 312 --------~~~~~~~~~ivg~~~a~e~lk~l~g~-~~l~~~~~~d~~~~~~~-~~~l~~r~p~C-~C~~ 369 (525)
.+.++.+.+++++..|.|++|+++.. .++++++.|+...+-+. ++.+ .|.++| +|++
T Consensus 269 vtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~~~~~Nym~~n~~eG~ytytf~~-er~~nC~vCS~ 336 (422)
T KOG2015|consen 269 VTGVVKRIIPAVASTNAVIAAVCATEALKLLTATDDPLDNYMNYNAEEGIYTYTFLL-ERDKNCPVCSN 336 (422)
T ss_pred hhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcchhhhhheeeecccceeEEEeee-ccCCCCccccC
Confidence 02355666799999999999999998 66699999999999885 5555 699999 9943
No 28
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=2.5e-34 Score=281.14 Aligned_cols=144 Identities=28% Similarity=0.464 Sum_probs=137.9
Q ss_pred cEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecCCc
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDT 233 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~ 233 (525)
||+|||+||+|++++++|+++|||+|+|+|.|.|+.+||+|||||+.+|+|++|+++++++|+++||+++|+++..++.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999988864
Q ss_pred ch--HhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceEEEEecCCCCceeecC
Q psy13373 234 SN--ACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCVYNYKGGPCYRCIY 297 (525)
Q Consensus 234 ~~--~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~v~~~~~~~c~~c~~ 297 (525)
++ ..++++++|+||+|+|+.+.|.++|++|+..++|+|++++.|+.|+++++.|+.++||.|.+
T Consensus 81 ~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~ 146 (234)
T cd01484 81 EQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVILPGMTECIECTL 146 (234)
T ss_pred hhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEcCCCCCCcccCC
Confidence 32 35789999999999999999999999999999999999999999999999999999999987
No 29
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=100.00 E-value=1.1e-33 Score=281.02 Aligned_cols=212 Identities=23% Similarity=0.358 Sum_probs=176.9
Q ss_pred CCCHHHHhhhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCC
Q psy13373 124 KFSKDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTI 203 (525)
Q Consensus 124 ~l~~~~~~rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~di 203 (525)
.||+.+..||+||.++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|.|.|+.+|+|||+++..+||
T Consensus 4 ~~~~~~~~rf~R~~~L--~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~v 81 (268)
T PRK15116 4 VISDAWRQRFGGTARL--YGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNV 81 (268)
T ss_pred CCCHHHHHHHhhHHHH--hCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhc
Confidence 4788888999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhhCCCcEEEEeeecCCcchHhHhhc-cCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccc--
Q psy13373 204 GQPKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIR-RYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEG-- 280 (525)
Q Consensus 204 G~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~-~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G-- 280 (525)
|++|++++++++.++||+++|+.++..++.++..+++. ++|+||+|.|++..+..|+++|+++++|+|+++..|..-
T Consensus 82 G~~Kve~~~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k~dp 161 (268)
T PRK15116 82 GLAKAEVMAERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDP 161 (268)
T ss_pred ChHHHHHHHHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccCCCC
Confidence 99999999999999999999999988888777777774 799999999999999999999999999999875443211
Q ss_pred -eEEEEecC----------------C--C--------CceeecCCCCCCCC-----------------CCCCcC-CCCcc
Q psy13373 281 -QLCVYNYK----------------G--G--------PCYRCIYPVPPPAE-----------------TVGTCG-DNGVL 315 (525)
Q Consensus 281 -~v~v~~~~----------------~--~--------~c~~c~~~~~~~~~-----------------~~~~c~-~~~~~ 315 (525)
.+.+-... + + .-+.|.|...++.. ...+|. ..|..
T Consensus 162 ~~~~~~di~~t~~~pla~~~R~~lr~~~~~~~~~~~~~~~~~v~S~E~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~gs~ 241 (268)
T PRK15116 162 TQIQVVDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQADGSVCAMKSTAEGPKRMDCASGFGAA 241 (268)
T ss_pred CeEEEEeeecccCChHHHHHHHHHHHhhCCCcccCccCCeEEEeCCCcCCCCCcccccccccccccccccccCCCCCCcc
Confidence 12221100 0 0 12667775432211 012453 46899
Q ss_pred cchhHHHHHHHHHHHHHHHhCC
Q psy13373 316 GPVPGVMGTLQAVETIKLLIGL 337 (525)
Q Consensus 316 ~~~~~ivg~~~a~e~lk~l~g~ 337 (525)
+.+++++|.++|.++|+.|.+.
T Consensus 242 ~~v~~~~G~~~a~~vi~~l~~~ 263 (268)
T PRK15116 242 TMVTATFGFVAVSHALKKMMAK 263 (268)
T ss_pred eehhHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998764
No 30
>KOG2014|consensus
Probab=100.00 E-value=1.1e-33 Score=275.24 Aligned_cols=232 Identities=22% Similarity=0.297 Sum_probs=193.7
Q ss_pred CCCCHHHHhhhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCC
Q psy13373 123 SKFSKDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHT 202 (525)
Q Consensus 123 ~~l~~~~~~rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~d 202 (525)
.++|++|...|||||++ ||.++|++|+++||+|+|.+|+|+|++|||+++||+++++.|.-.|++.+++-|||+..++
T Consensus 4 ~else~E~alYDRQIRL--WG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~ 81 (331)
T KOG2014|consen 4 EELSEQEIALYDRQIRL--WGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASS 81 (331)
T ss_pred hhhhHHHHHHHHHHHHH--ccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhh
Confidence 35899999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceE
Q psy13373 203 IGQPKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQL 282 (525)
Q Consensus 203 iG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v 282 (525)
+|+.|+++..++++.+||.+.|.+....+.+.. .++|.+||+||..-.+.+.+..+|..|++.+++|+.++++|+.|++
T Consensus 82 vg~~raeas~erl~~LNPmV~v~~d~edl~ek~-eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a~d~~g~~Gy~ 160 (331)
T KOG2014|consen 82 VGQTRAEASLERLQDLNPMVDVSVDKEDLSEKD-EEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFYAGDCFGLCGYA 160 (331)
T ss_pred hchHHHHHHHHHHHhcCCceEEEechhhhhhcc-hhhhhceeEEEEeccchhhhhhHHHHHHhcCceEEeccccceeeee
Confidence 999999999999999999999999888776554 7899999999987778888899999999999999999999999998
Q ss_pred EEEecC-----C----------------------CCceeecCCC-------C----------------------------
Q psy13373 283 CVYNYK-----G----------------------GPCYRCIYPV-------P---------------------------- 300 (525)
Q Consensus 283 ~v~~~~-----~----------------------~~c~~c~~~~-------~---------------------------- 300 (525)
++-.-. . ..|.-|..+- .
T Consensus 161 F~dL~~h~y~~~~~~~~~~~~~k~~k~~~~~~~~vk~~~~~~~~~Eal~~~~~~k~k~~~rr~~~~~~ll~v~l~f~~s~ 240 (331)
T KOG2014|consen 161 FADLQEHKYLEEKTKVAKVSQTKRAKVDETETEWVKRKVVFPSVKEALSVDWTKKEKRKPRRTKKLYFLLPVLLKFRTSE 240 (331)
T ss_pred eeehhhhhhhhhcccccccccccceeeeeccceehhhhhcccCHHHHHhcccchhhhhhhhccCcceehHHHHHHHHHhc
Confidence 762211 0 0111111100 0
Q ss_pred --CCCCC------------CCCcCC---------------CCcccchhHHHHHHHHHHHHHHHhCC-CCCCeEEEEEcCC
Q psy13373 301 --PPAET------------VGTCGD---------------NGVLGPVPGVMGTLQAVETIKLLIGL-PVMDKLLVYDAEL 350 (525)
Q Consensus 301 --~~~~~------------~~~c~~---------------~~~~~~~~~ivg~~~a~e~lk~l~g~-~~l~~~~~~d~~~ 350 (525)
.+.+. ...|++ +..++|+++++|++.|+|+||.+++. +|++|+++||+.+
T Consensus 241 ~r~pg~~~~~d~erl~~I~~ell~s~~i~pd~~~~f~~~~~~ef~Pv~AvVGGivaQevIk~isk~~~Pl~Nff~fdg~~ 320 (331)
T KOG2014|consen 241 GRDPGETSEEDLERLLQIRNELLESETIIPDELLEFLSLIFTEFAPVCAVVGGILAQEVIKAISKKGPPLNNFFIFDGET 320 (331)
T ss_pred CCCCccccHHHHHHHHHHHHhhccccccCCchHHHHHHhcccccCchhhhhhhHhHHHHHHHhhcCCCcccceEEeeccc
Confidence 00000 001111 24589999999999999999999999 8889999999998
Q ss_pred CeeEEee
Q psy13373 351 SKFLSVK 357 (525)
Q Consensus 351 ~~~~~~~ 357 (525)
+..-...
T Consensus 321 g~g~ie~ 327 (331)
T KOG2014|consen 321 GKGPIED 327 (331)
T ss_pred Cceehhh
Confidence 7654433
No 31
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=3.9e-33 Score=319.59 Aligned_cols=150 Identities=23% Similarity=0.367 Sum_probs=143.7
Q ss_pred HHhhhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHH
Q psy13373 129 ITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKV 208 (525)
Q Consensus 129 ~~~rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka 208 (525)
+.++||||+++ ||.++|+||++++|+|+|+||||+++||||+++|||+|+|+|+|.|+.+||+||||++++|||++||
T Consensus 3 d~~lYsRQi~l--~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Ka 80 (1008)
T TIGR01408 3 DEALYSRQLYV--LGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRA 80 (1008)
T ss_pred hHhhhhhHHHh--cCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHH
Confidence 34689999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcC--CcEEEecccCccceEEE
Q psy13373 209 TSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREG--RPLVSASALGLEGQLCV 284 (525)
Q Consensus 209 ~~~~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~--~p~i~~~~~g~~G~v~v 284 (525)
++++++|+++||+++|+++...++ .+++++||+||+|.++...+..+|++|++++ +|+|++++.|++|++++
T Consensus 81 ea~~~~L~eLNp~V~V~~~~~~l~----~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G~vf~ 154 (1008)
T TIGR01408 81 EAVVKKLAELNPYVHVSSSSVPFN----EEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRGLFGSLFC 154 (1008)
T ss_pred HHHHHHHHHHCCCceEEEecccCC----HHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecceEEEEEe
Confidence 999999999999999999987775 3589999999999999999999999999999 99999999999999876
No 32
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=100.00 E-value=1.6e-32 Score=263.22 Aligned_cols=184 Identities=31% Similarity=0.387 Sum_probs=156.2
Q ss_pred cCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCC
Q psy13373 142 VGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRN 221 (525)
Q Consensus 142 ~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~ 221 (525)
+|.++|++|++++|+|+|+||+|+++|++|+++||++|+|+|+|.|+++||+||++ ..+|+|++|+++++++|+++||+
T Consensus 11 ~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~-~~~~iG~~Ka~~~~~~l~~inp~ 89 (200)
T TIGR02354 11 HTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQY-KASQVGEPKTEALKENISEINPY 89 (200)
T ss_pred cCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccC-ChhhCCCHHHHHHHHHHHHHCCC
Confidence 78999999999999999999999999999999999999999999999999999974 67899999999999999999999
Q ss_pred cEEEEeeecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHh-HhcC-CcEEEecccCccceE--EEEecC--CCCceee
Q psy13373 222 TIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDAC-LREG-RPLVSASALGLEGQL--CVYNYK--GGPCYRC 295 (525)
Q Consensus 222 v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~-~~~~-~p~i~~~~~g~~G~v--~v~~~~--~~~c~~c 295 (525)
++++++...++.++..++++++|+||+|+|++..|..+++.| +..+ .+++.+ .|+.|+. ..+.+. ...||.|
T Consensus 90 ~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~--~g~~g~~~~~~~~~~~~~~~~~~~ 167 (200)
T TIGR02354 90 TEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAA--SGLAGYDDANSIKTRKISKHFYLC 167 (200)
T ss_pred CEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEE--eccccCCCCceEEecccCCCEEEc
Confidence 999999999998888889999999999999999998866554 4444 445554 4555544 334232 3568888
Q ss_pred cCCCCCCCCCCCCcCCCCcccchhHHHHHHHHHHHHHHH
Q psy13373 296 IYPVPPPAETVGTCGDNGVLGPVPGVMGTLQAVETIKLL 334 (525)
Q Consensus 296 ~~~~~~~~~~~~~c~~~~~~~~~~~ivg~~~a~e~lk~l 334 (525)
-. .+ ...|...|+++|.++++|+++|.++||++
T Consensus 168 ~~--~~----~~~~~~~g~~~p~v~~~a~~qa~~~l~~~ 200 (200)
T TIGR02354 168 GD--GK----SDAKQGLGLMAPRVQICAAHQANLVLELI 200 (200)
T ss_pred CC--CC----CcccCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 22 11 12678899999999999999999999974
No 33
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=5.3e-33 Score=318.46 Aligned_cols=177 Identities=31% Similarity=0.485 Sum_probs=163.0
Q ss_pred HhhhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCC-----ceEEEEeCCcccccCCCcccccCCCCCC
Q psy13373 130 TERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGV-----GTLGLADYDRVELSNLHRQVIHTTHTIG 204 (525)
Q Consensus 130 ~~rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GV-----g~i~lvD~d~V~~sNL~Rq~l~~~~diG 204 (525)
..||+||+++ ||.++|++|++++|+|||+|||||+++++|+++|| |+|+|+|.|.|+.|||+|||||+.+|||
T Consensus 399 ~~RYdrqi~l--~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIG 476 (1008)
T TIGR01408 399 GDRYDAQIAV--FGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIG 476 (1008)
T ss_pred hhhhHHHHHH--cCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcC
Confidence 3699999999 99999999999999999999999999999999999 8999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhhCCCcEEEEeeecCCcch--H--hHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccc
Q psy13373 205 QPKVTSAKRFISAINRNTIVHAYQTLLDTSN--A--CDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEG 280 (525)
Q Consensus 205 ~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~~~--~--~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G 280 (525)
++|+++++++++++||+++|+++...+..++ . .++++++|+||+|.|+..+|.++++.|+.+++|+|.+++.|+.|
T Consensus 477 k~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G 556 (1008)
T TIGR01408 477 KPKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKG 556 (1008)
T ss_pred cHHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCcee
Confidence 9999999999999999999999999886542 1 47889999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCceeecCCCCCCCCCCCCcC
Q psy13373 281 QLCVYNYKGGPCYRCIYPVPPPAETVGTCG 310 (525)
Q Consensus 281 ~v~v~~~~~~~c~~c~~~~~~~~~~~~~c~ 310 (525)
+++++.|..+.||.|.. . +.....+.|.
T Consensus 557 ~v~v~ip~~te~y~~~~-d-~~~~~~P~Ct 584 (1008)
T TIGR01408 557 NTQVVVPHLTESYGSSR-D-PPEKEIPFCT 584 (1008)
T ss_pred eEEEEeCCCcCCCCCCC-C-CCCCCCCccc
Confidence 99999999999999974 3 2233445564
No 34
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=100.00 E-value=2.2e-32 Score=257.09 Aligned_cols=171 Identities=34% Similarity=0.425 Sum_probs=154.4
Q ss_pred cEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecCCc
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDT 233 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~ 233 (525)
+|+|+|+||+|++++++|+++||++|+|+|.|.|+.+||+||++ ..+|+|++|+++++++|+++||++++++++..++.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-FLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-cHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 69999999999999999999999999999999999999999995 47899999999999999999999999999999988
Q ss_pred chHhHhhccCCeEeecCCCHHHHHHHHHHhHhc-CCcEEEecccCccceEEEEecCC--CCceeecCCCCCCCCCCCCcC
Q psy13373 234 SNACDIIRRYDVVVDACDNAPTRYLLNDACLRE-GRPLVSASALGLEGQLCVYNYKG--GPCYRCIYPVPPPAETVGTCG 310 (525)
Q Consensus 234 ~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~-~~p~i~~~~~g~~G~v~v~~~~~--~~c~~c~~~~~~~~~~~~~c~ 310 (525)
++..++++++|+||+|+|++..|..+++.|.+. ++|+|+++..+..|++..+.+.. .+||+|.... + ..|.
T Consensus 80 ~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~ 153 (174)
T cd01487 80 NNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIKTKKISDNFYICGDLV-N-----EAKE 153 (174)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEEecCCCCCeEEeecCC-C-----CCCC
Confidence 888889999999999999999999888887776 99999999999999988777654 5799997211 1 2478
Q ss_pred CCCcccchhHHHHHHHHHHHH
Q psy13373 311 DNGVLGPVPGVMGTLQAVETI 331 (525)
Q Consensus 311 ~~~~~~~~~~ivg~~~a~e~l 331 (525)
..|+++|+++++|+++|.|+|
T Consensus 154 ~~g~~~~~~~~~~~~~~~e~~ 174 (174)
T cd01487 154 GLGLMAPRVNICAAHQANLVL 174 (174)
T ss_pred CcCccccHHHHHHHHHHHhhC
Confidence 899999999999999999985
No 35
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=100.00 E-value=7e-32 Score=263.67 Aligned_cols=190 Identities=35% Similarity=0.434 Sum_probs=159.8
Q ss_pred cCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCC
Q psy13373 142 VGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRN 221 (525)
Q Consensus 142 ~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~ 221 (525)
+|.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++|||||+++..+|||++|+++++++|+++||+
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~ 80 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE 80 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeeecCCcchHhHhhc-cCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCcc---ceEEEEecCC--------
Q psy13373 222 TIVHAYQTLLDTSNACDIIR-RYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLE---GQLCVYNYKG-------- 289 (525)
Q Consensus 222 v~v~~~~~~i~~~~~~~~~~-~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~---G~v~v~~~~~-------- 289 (525)
++|+.++..++.++..+++. ++|+||+|.|+...+..++++|+++++|+|++...|.. ..+.+-....
T Consensus 81 ~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~dp~~i~i~di~~t~~~pla~ 160 (231)
T cd00755 81 CEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGKLDPTRIRVADISKTSGDPLAR 160 (231)
T ss_pred cEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCCeEEEccEeccccCcHHH
Confidence 99999999998887777774 69999999999999999999999999999998665543 2343321110
Q ss_pred -----------CCceeecCCCCCCCC------------------CCCCcCCCCcccchhHHHHHHHHHHHH
Q psy13373 290 -----------GPCYRCIYPVPPPAE------------------TVGTCGDNGVLGPVPGVMGTLQAVETI 331 (525)
Q Consensus 290 -----------~~c~~c~~~~~~~~~------------------~~~~c~~~~~~~~~~~ivg~~~a~e~l 331 (525)
..-+.|.|.+..+.. ....|...|+++++++++|.++|.++|
T Consensus 161 ~~R~~Lrk~~~~~~~~~v~S~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~vp~~~G~~~a~~vi 231 (231)
T cd00755 161 KVRKRLRKRGIFFGVPVVYSTEPPDPPKADELVCGDEVGADAALQGLRRAGLGSASTVPAVFGLAIASEVI 231 (231)
T ss_pred HHHHHHHHcCCCCCeEEEeCCCCCCCCccccccccccccccccccCCCCCCCCcceechHHHHHHHHHhhC
Confidence 012667775532211 112345668999999999999999874
No 36
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.98 E-value=6.7e-32 Score=257.07 Aligned_cols=209 Identities=30% Similarity=0.400 Sum_probs=175.3
Q ss_pred HHHHhhhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCc
Q psy13373 127 KDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQP 206 (525)
Q Consensus 127 ~~~~~rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~ 206 (525)
+.-.+||+|..+| +|.++.+||++++|+|+|+||+||+++..|+|+|+|+|+|||.|.|+.+|+|||.-....+||++
T Consensus 7 ~~~~~rf~~~~~l--~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~ 84 (263)
T COG1179 7 DAYRQRFGGIARL--YGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKP 84 (263)
T ss_pred HHHHHHhhhHHHH--cChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccH
Confidence 3455689999999 99999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHHHHHHHHhhCCCcEEEEeeecCCcchHhHhhc-cCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccc---eE
Q psy13373 207 KVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIR-RYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEG---QL 282 (525)
Q Consensus 207 Ka~~~~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~-~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G---~v 282 (525)
|+++++++++++||.++|.+++..+++++..+++. ++|+||||.|+...+..|-.+|+++++|+|+++..|..- ++
T Consensus 85 Kv~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~k~DPTri 164 (263)
T COG1179 85 KVEVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGGKLDPTRI 164 (263)
T ss_pred HHHHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccCCCCCceE
Confidence 99999999999999999999999999999888875 599999999999999999999999999999975443211 22
Q ss_pred EEEe---------------------cCCCCceeecCCCCCC--CC--C-------------CCCcCC-CCcccchhHHHH
Q psy13373 283 CVYN---------------------YKGGPCYRCIYPVPPP--AE--T-------------VGTCGD-NGVLGPVPGVMG 323 (525)
Q Consensus 283 ~v~~---------------------~~~~~c~~c~~~~~~~--~~--~-------------~~~c~~-~~~~~~~~~ivg 323 (525)
.+-. |+...-..|.|...+. +. . ...|.. .|+++++++++|
T Consensus 165 ~v~DiskT~~DPLa~~vR~~LRk~~~~~~~gi~vVfS~E~~~~P~~d~~~~~~~~~~~~~~~~~c~~~~gs~~~Vta~fG 244 (263)
T COG1179 165 QVADISKTIQDPLAAKVRRKLRKRFPKIKFGVPVVFSTENPVYPQADGSVCAIDATAESAKRLDCARGLGSATFVTAVFG 244 (263)
T ss_pred EeeechhhccCcHHHHHHHHHHHhccCCccCCceEecCCCCCCCcccccccccchhhccchhhhhhcCCCcccccchHHH
Confidence 2211 1111224566654322 11 0 023655 789999999999
Q ss_pred HHHHHHHHHHHhCC
Q psy13373 324 TLQAVETIKLLIGL 337 (525)
Q Consensus 324 ~~~a~e~lk~l~g~ 337 (525)
..+|.++++-++..
T Consensus 245 l~~as~vv~~i~~~ 258 (263)
T COG1179 245 LVAASEVVKKILDK 258 (263)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998875
No 37
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=99.97 E-value=6.5e-32 Score=284.76 Aligned_cols=156 Identities=21% Similarity=0.338 Sum_probs=146.7
Q ss_pred hhhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHH
Q psy13373 131 ERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTS 210 (525)
Q Consensus 131 ~rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~ 210 (525)
.|||||+++ ||.++|++|.+++|+|||+||+|+|++|||+++|||+|+|+|+|.|+.+||+||||++.+|||++||++
T Consensus 1 ~rYDRQlrL--wG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~ 78 (425)
T cd01493 1 QKYDRQLRL--WGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEA 78 (425)
T ss_pred CcchHHHHH--hHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHH
Confidence 389999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCcEEEEeeecCCc--chHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceEEEEecC
Q psy13373 211 AKRFISAINRNTIVHAYQTLLDT--SNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCVYNYK 288 (525)
Q Consensus 211 ~~~~l~~lnp~v~v~~~~~~i~~--~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~v~~~~ 288 (525)
++++|+++||+++++.+...+.. .+..++++++|+||+|.++......++++|++.++|+|.+++.|++|++++..+.
T Consensus 79 ~~~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~v~v~~~~ 158 (425)
T cd01493 79 TCELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYGYIRIQLKE 158 (425)
T ss_pred HHHHHHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCEEEEEEEECC
Confidence 99999999999999998876643 2346889999999999999888888999999999999999999999999987763
No 38
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.97 E-value=7.1e-31 Score=261.63 Aligned_cols=215 Identities=23% Similarity=0.309 Sum_probs=170.9
Q ss_pred cEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCC--CCCcHHHHHHHHHHhhCCCcEEEEeeecC
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHT--IGQPKVTSAKRFISAINRNTIVHAYQTLL 231 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~d--iG~~Ka~~~~~~l~~lnp~v~v~~~~~~i 231 (525)
||+|+|+||||+++|++|+++|||+|+|+|+|.|+.+||+||+||+.+| +|++|+++++++|+++||+++++.+...+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 6999999999999999999999999999999999999999999999999 99999999999999999999999887654
Q ss_pred -----------------CcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceEEEEecC------
Q psy13373 232 -----------------DTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCVYNYK------ 288 (525)
Q Consensus 232 -----------------~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~v~~~~------ 288 (525)
+.++..++++++|+||+|+|+++.|++++.+|..+++|+|++ ..|+.|++.+...-
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~a-alGfdg~lvmrhg~~~~~~~ 159 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVINA-ALGFDSYLVMRHGAGPQSQS 159 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEEE-EeccceEEEEEeCCCccccc
Confidence 233567889999999999999999999999999999999984 78999998775421
Q ss_pred -------------CCCceeecCCCCCCCCC--CCCcCCCCcccchhHHHHHHHHHHHHHHHhCCC---------------
Q psy13373 289 -------------GGPCYRCIYPVPPPAET--VGTCGDNGVLGPVPGVMGTLQAVETIKLLIGLP--------------- 338 (525)
Q Consensus 289 -------------~~~c~~c~~~~~~~~~~--~~~c~~~~~~~~~~~ivg~~~a~e~lk~l~g~~--------------- 338 (525)
.-.||.|..-..|.... ...-..-.+..|-.+.+++-+|.|.+-.++..|
T Consensus 160 ~~~~~~~~~~~~~~lgCYfCnDv~ap~~s~~drtlDqqctvtrpG~a~ias~~avEl~~s~lqhp~~~~a~~~~~~~~~~ 239 (307)
T cd01486 160 GSGDSSSDSIPGSRLGCYFCNDVVAPGDSLKDRTLDQQCTVTRPGLSMIASSIAVELLVSLLQHPLGGHAPAESSSNEGD 239 (307)
T ss_pred ccccccccccCCCCcceeeeCCEecCCCCCCCcccCcccceecCchHHHHHHHHHHHHHHHHcCCCccCCCCccccccCC
Confidence 35799997644333211 111122356778888888899999888888751
Q ss_pred ----CCC-eEEEEEcCCCeeEEeeec-CCCCCC-ccCC
Q psy13373 339 ----VMD-KLLVYDAELSKFLSVKLR-KKKEDC-VCAH 369 (525)
Q Consensus 339 ----~l~-~~~~~d~~~~~~~~~~l~-~r~p~C-~C~~ 369 (525)
+++ --..+.+.-..|+.+.+. ++.+.| +|+.
T Consensus 240 ~~~~~lg~~Phqirg~l~~~~~~~~~~~~~~~C~aCs~ 277 (307)
T cd01486 240 EPTTVLGILPHQIRGFLSNFSNLTLSGQAYDQCTACSD 277 (307)
T ss_pred CCCCcCccCCeeeeeehhhCeeeeecccCCCccccCCH
Confidence 011 113444545556666655 678888 8844
No 39
>KOG2013|consensus
Probab=99.97 E-value=2.1e-31 Score=272.10 Aligned_cols=153 Identities=30% Similarity=0.545 Sum_probs=146.9
Q ss_pred HHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEE
Q psy13373 145 MGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIV 224 (525)
Q Consensus 145 ~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v 224 (525)
+-++.++++|||||||||+|||++|+|++.|+++|+|||-|+|+.|||||||||+.+|||++||.++++.+++.||.+++
T Consensus 5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l 84 (603)
T KOG2013|consen 5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKL 84 (603)
T ss_pred HHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCce
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecCCcc-hHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceEEEEecCCCCceeecC
Q psy13373 225 HAYQTLLDTS-NACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCVYNYKGGPCYRCIY 297 (525)
Q Consensus 225 ~~~~~~i~~~-~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~v~~~~~~~c~~c~~ 297 (525)
.++...+.+. ...+++++||+|++|.||.++|..+|+.|....+|+|.+|+.|+.||+.++.++++.||.|.-
T Consensus 85 ~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC~p 158 (603)
T KOG2013|consen 85 VPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVIIKGKTECYECIP 158 (603)
T ss_pred EeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEecCCcceecccC
Confidence 9999998765 467889999999999999999999999999999999999999999999999999999999974
No 40
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=99.97 E-value=1.4e-30 Score=273.44 Aligned_cols=155 Identities=28% Similarity=0.482 Sum_probs=142.7
Q ss_pred cEEEEcCCcchHHHHHHhHHcCC-----ceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEee
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGV-----GTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQ 228 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GV-----g~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 228 (525)
+|+|||+||+||+++|+|+++|| |+|+|+|.|.|+.+||+|||||+.+|||++|+++++++++++||+++|+++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcchH----hHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceEEEEecCCCCceeecCCCCCCCC
Q psy13373 229 TLLDTSNA----CDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCVYNYKGGPCYRCIYPVPPPAE 304 (525)
Q Consensus 229 ~~i~~~~~----~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~v~~~~~~~c~~c~~~~~~~~~ 304 (525)
..+.+++. .++++++|+||+|.|+.++|..+++.|+..++|+|.+++.|+.|+++++.|..++||.|... +...
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~iP~~te~y~~~~~--p~~~ 158 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRD--PPEK 158 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEeCCCCCCccCCCC--CCCC
Confidence 88875433 47889999999999999999999999999999999999999999999999999999999843 2333
Q ss_pred CCCCcC
Q psy13373 305 TVGTCG 310 (525)
Q Consensus 305 ~~~~c~ 310 (525)
..+.|.
T Consensus 159 ~~P~Ct 164 (435)
T cd01490 159 SIPLCT 164 (435)
T ss_pred CCCCcc
Confidence 455664
No 41
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.97 E-value=3.4e-30 Score=232.43 Aligned_cols=134 Identities=39% Similarity=0.615 Sum_probs=125.8
Q ss_pred hcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeec
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTL 230 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 230 (525)
++++|+|+|+|++|++++++|+++||++|+|+|+|.|+++|++||++++.+|+|++|+++++++|+++||++++++++..
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceEEE
Q psy13373 231 LDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCV 284 (525)
Q Consensus 231 i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~v 284 (525)
++.++..++++++|+||+|+|+.+.+..++++|+++++|+|++++.|+.|++++
T Consensus 81 ~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 81 IDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp CSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEE
T ss_pred cccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEE
Confidence 988888899999999999999999999999999999999999999999999854
No 42
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.96 E-value=1.4e-28 Score=224.07 Aligned_cols=133 Identities=41% Similarity=0.608 Sum_probs=127.7
Q ss_pred cEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecCCc
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDT 233 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~ 233 (525)
+|+|+|+||+|++++++|+++|+++|+|+|+|.|+++||+||++++.+|+|++|+++++++++++||+++++.++..+..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred chHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceEEEEe
Q psy13373 234 SNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCVYN 286 (525)
Q Consensus 234 ~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~v~~ 286 (525)
.+..++++++|+||+|+|+.+.+..++++|+++++|+|++++.|+.|+++++.
T Consensus 81 ~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 81 DNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence 66678899999999999999999999999999999999999999999998765
No 43
>KOG2336|consensus
Probab=99.96 E-value=5.4e-29 Score=239.31 Aligned_cols=233 Identities=26% Similarity=0.462 Sum_probs=199.9
Q ss_pred hhhhhcccccccCH-HHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHH
Q psy13373 131 ERYSRQILLDQVGV-MGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVT 209 (525)
Q Consensus 131 ~rysRq~~l~~~G~-~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~ 209 (525)
+-|||-+.|..+|. +..+||+...|.|||.||+||-.|..|.|+|+|++.|+|.|.|+..|.||-| |.++..|.+|++
T Consensus 60 NPYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLF-f~P~QaGlsKv~ 138 (422)
T KOG2336|consen 60 NPYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPDQAGLSKVD 138 (422)
T ss_pred ChHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccc-cCcccccchHHH
Confidence 35999999888887 5789999999999999999999999999999999999999999999999965 689999999999
Q ss_pred HHHHHHHhhCCCcEEEEeeecCCcc-hHhHhh-----------ccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecc--
Q psy13373 210 SAKRFISAINRNTIVHAYQTLLDTS-NACDII-----------RRYDVVVDACDNAPTRYLLNDACLREGRPLVSASA-- 275 (525)
Q Consensus 210 ~~~~~l~~lnp~v~v~~~~~~i~~~-~~~~~~-----------~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~-- 275 (525)
++.+.|..+||++.+++|+.+++.- +...|. +..|+|+.|.||++.|..+|..|.+.+.-|+..++
T Consensus 139 AA~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q~WmESGVSE 218 (422)
T KOG2336|consen 139 AAVQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQTWMESGVSE 218 (422)
T ss_pred HHHHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhhHHHHccCcc
Confidence 9999999999999999999988763 333332 34899999999999999999999999999988765
Q ss_pred cCccceEEEEecCCCCceeecCCCCCC--C-----CCCCCcCCCCcccchhHHHHHHHHHHHHHHHhCCCCCCeEEEEEc
Q psy13373 276 LGLEGQLCVYNYKGGPCYRCIYPVPPP--A-----ETVGTCGDNGVLGPVPGVMGTLQAVETIKLLIGLPVMDKLLVYDA 348 (525)
Q Consensus 276 ~g~~G~v~v~~~~~~~c~~c~~~~~~~--~-----~~~~~c~~~~~~~~~~~ivg~~~a~e~lk~l~g~~~l~~~~~~d~ 348 (525)
....|+|..+.|+.++||.|.-|-.-. . .....|. ..++++.+++++++.+..||+|+.......++-|+.
T Consensus 219 nAVSGHIQ~i~PGetACFACaPPlVVAs~IDErTLKReGVCA--ASLPTTMgvvAG~LVqN~LK~LLNFGeVS~YlGYNa 296 (422)
T KOG2336|consen 219 NAVSGHIQLIVPGETACFACAPPLVVASGIDERTLKREGVCA--ASLPTTMGVVAGFLVQNSLKFLLNFGEVSPYLGYNA 296 (422)
T ss_pred ccccceeEEecCCccceecccCceeeecCcchhhhhhcceee--ecCcchHHHHHHHHHHHHHHHHhhccccchhhcchh
Confidence 457999999999999999997543111 1 1123453 568899999999999999999998844466788888
Q ss_pred CCCeeEEeeecCCCCCC---cc
Q psy13373 349 ELSKFLSVKLRKKKEDC---VC 367 (525)
Q Consensus 349 ~~~~~~~~~l~~r~p~C---~C 367 (525)
...=|.++.+. +||.| .|
T Consensus 297 l~DFFP~msmk-PNPqCdd~~C 317 (422)
T KOG2336|consen 297 LSDFFPTMSMK-PNPQCDDRNC 317 (422)
T ss_pred HHhhCccccCC-CCCCCCcHHH
Confidence 88888888886 89999 78
No 44
>KOG2012|consensus
Probab=99.96 E-value=1e-28 Score=265.53 Aligned_cols=149 Identities=26% Similarity=0.385 Sum_probs=142.5
Q ss_pred HhhhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHH
Q psy13373 130 TERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVT 209 (525)
Q Consensus 130 ~~rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~ 209 (525)
...||||+++ +|+++|+||.+++|+|.|++|||.||||||+++||+++||.|+..+..+||+.||+++++|||++|++
T Consensus 17 E~LYSRQLYV--lG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~DigknRA~ 94 (1013)
T KOG2012|consen 17 ESLYSRQLYV--LGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDIGKNRAE 94 (1013)
T ss_pred hhhhhhhhhh--ccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhcCCchHH
Confidence 3579999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceEEE
Q psy13373 210 SAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCV 284 (525)
Q Consensus 210 ~~~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~v 284 (525)
+..++|.++|++|.|.+++..++ .+++++|++||.+..+.+....|+++|++++|.+|.+.+.|++|++++
T Consensus 95 as~~~LaeLN~yV~V~v~t~~~~----~e~L~~FqvVVlt~~~le~q~~i~~fch~~~i~fi~ad~RGLfg~lFC 165 (1013)
T KOG2012|consen 95 ASVEKLAELNNYVPVVVLTGPLT----EEFLSDFQVVVLTDASLEEQLKINDFCHSHGIAFIAADTRGLFGQLFC 165 (1013)
T ss_pred HHHHHHHHhhcceeeEEecCccc----HHHHhCCcEEEEecCchHHHHHHHHHHHhcCeEEEEeccchhhhhhhc
Confidence 99999999999999999887665 678999999999888888889999999999999999999999999976
No 45
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.96 E-value=4.8e-28 Score=237.32 Aligned_cols=204 Identities=21% Similarity=0.195 Sum_probs=170.9
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCC-----c-----eEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhC
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGV-----G-----TLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAIN 219 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GV-----g-----~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~ln 219 (525)
-+..+|+|||+||+||+++++|+++|+ | +|+|+|+|.|+++||+||+ |..+|||++|++++++++..++
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQl-f~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQA-FYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhccc-CChhHCCcHHHHHHHHHHHhcc
Confidence 367899999999999999999999973 4 9999999999999999995 6789999999999999999988
Q ss_pred CCcEEEEeeecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHh--c-CCcEEEecccCccceEEE------------
Q psy13373 220 RNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLR--E-GRPLVSASALGLEGQLCV------------ 284 (525)
Q Consensus 220 p~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~--~-~~p~i~~~~~g~~G~v~v------------ 284 (525)
.+++++++..+..+ +++.++|+||+|+|+.++|..|++.|.+ . .+|||+++..+..|++.+
T Consensus 88 -~~~i~a~~~~~~~~---~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~i~~~~k~~~~ 163 (244)
T TIGR03736 88 -GTDWTAHPERVERS---STLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQVPSRAKGENR 163 (244)
T ss_pred -CceEEEEEeeeCch---hhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEecccccccCCc
Confidence 89999999888763 3467899999999999999999999987 2 489999998776666644
Q ss_pred -EecCCCCceeecCCCCC-CCCCCCCcCCCCcccchhHHHHHHHHHHHHHHHhCC---CCC-CeEEEEEcCCCeeEEeee
Q psy13373 285 -YNYKGGPCYRCIYPVPP-PAETVGTCGDNGVLGPVPGVMGTLQAVETIKLLIGL---PVM-DKLLVYDAELSKFLSVKL 358 (525)
Q Consensus 285 -~~~~~~~c~~c~~~~~~-~~~~~~~c~~~~~~~~~~~ivg~~~a~e~lk~l~g~---~~l-~~~~~~d~~~~~~~~~~l 358 (525)
..|..+.||.|.....+ +.+..++|+....+.+..-++..++|+.+..+|-.. ..+ ++..+||+.++..+.+++
T Consensus 164 ~~lP~vte~y~~~~d~~~~~~~~~PsCsla~al~~Q~l~iN~~~a~~~~~~L~~lf~~g~~~~~g~~~nl~~~~~~p~~v 243 (244)
T TIGR03736 164 LRLPHVGELFPELIDPSVDPDDDRPSCSLAEALAKQSLFINQAIAVFAMNLLWKLFRKGRLEFHGVFVNLATGRTNPLPV 243 (244)
T ss_pred eecCCchhhCcccccCccCCCCCCCCchHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCceeeeEEEEECCCCccccccC
Confidence 34555677877665422 334567999989999999999999999998888776 556 889999999887766543
No 46
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.95 E-value=4.3e-28 Score=233.19 Aligned_cols=119 Identities=24% Similarity=0.280 Sum_probs=110.7
Q ss_pred CCHHHHhhhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCC
Q psy13373 125 FSKDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIG 204 (525)
Q Consensus 125 l~~~~~~rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG 204 (525)
|++.|.+|||||+++ ||.++|+||++++|+|+|+||+|++++|||+++|||+|+|+|+|.|+.+||+|||+++. ++|
T Consensus 1 ms~~E~~RYsRQIrL--wG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvG 77 (287)
T PTZ00245 1 MRDAEAVRYDRQIRL--WGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAG 77 (287)
T ss_pred CCHHHHHHHhHHHHH--hCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-ccC
Confidence 577888999999999 99999999999999999999999999999999999999999999999999999999987 689
Q ss_pred CcHHHHHHHHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEeecCCC
Q psy13373 205 QPKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDN 252 (525)
Q Consensus 205 ~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~ 252 (525)
++|+++++++|+++||+++|+.+...++..+ .|++||.+.-+
T Consensus 78 k~KAeaAa~~L~eLNP~V~V~~i~~rld~~n------~fqvvV~~~~~ 119 (287)
T PTZ00245 78 GTRGARALGALQRLNPHVSVYDAVTKLDGSS------GTRVTMAAVIT 119 (287)
T ss_pred CcHHHHHHHHHHHHCCCcEEEEcccccCCcC------CceEEEEEccc
Confidence 9999999999999999999999988876543 78999886443
No 47
>KOG2018|consensus
Probab=99.94 E-value=1.2e-26 Score=226.42 Aligned_cols=217 Identities=29% Similarity=0.436 Sum_probs=172.9
Q ss_pred hhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHH
Q psy13373 132 RYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSA 211 (525)
Q Consensus 132 rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~ 211 (525)
...|++.+ ||.++|+||+++-|+||||||+||+++-.|+|+||++|.|||+|.|+.+-||||......|||.||+.++
T Consensus 56 qLarN~aF--fGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~cl 133 (430)
T KOG2018|consen 56 QLARNYAF--FGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCL 133 (430)
T ss_pred HHHhHHhh--hhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHH
Confidence 47889999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcEEEEeeecCCcchHhHhh-ccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccce---EEEEe-
Q psy13373 212 KRFISAINRNTIVHAYQTLLDTSNACDII-RRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQ---LCVYN- 286 (525)
Q Consensus 212 ~~~l~~lnp~v~v~~~~~~i~~~~~~~~~-~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~---v~v~~- 286 (525)
+++++++.|.+.|.+...-++.++.++++ .+.|+||||.||+.++.-+-++|+.+++++|++-..+...- +.+-.
T Consensus 134 kkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~GaaaksDPTrv~v~Di 213 (430)
T KOG2018|consen 134 KKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAAAKSDPTRVNVADI 213 (430)
T ss_pred HHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCccccCCCceeehhhc
Confidence 99999999999999999888888777765 57999999999999999999999999999998643332221 11100
Q ss_pred --cCCCCceeec----------------C----CCCCCCCC--CCCcC------------------CCCcccchhHHHHH
Q psy13373 287 --YKGGPCYRCI----------------Y----PVPPPAET--VGTCG------------------DNGVLGPVPGVMGT 324 (525)
Q Consensus 287 --~~~~~c~~c~----------------~----~~~~~~~~--~~~c~------------------~~~~~~~~~~ivg~ 324 (525)
....|-.+|. | |.+..... ...|+ -.+++|+|++++|.
T Consensus 214 s~t~~DPlsR~vRrrLrk~GI~~GIpVVFS~Ekpdprka~lLp~~d~e~erg~~delsav~dfrvRilPvlGtmP~iFGl 293 (430)
T KOG2018|consen 214 SETEEDPLSRSVRRRLRKRGIEGGIPVVFSLEKPDPRKAKLLPLEDEEGERGNVDELSAVPDFRVRILPVLGTMPGIFGL 293 (430)
T ss_pred cccccCcHHHHHHHHHHHhccccCCceEEecCCCCccccccCCCCccccccCChhhhhhccchhhhhcccccCcchHHHH
Confidence 0112333332 1 11100000 11111 13789999999999
Q ss_pred HHHHHHHHHHhCC--CCC---CeEEEEEcCC
Q psy13373 325 LQAVETIKLLIGL--PVM---DKLLVYDAEL 350 (525)
Q Consensus 325 ~~a~e~lk~l~g~--~~l---~~~~~~d~~~ 350 (525)
.+|..+|.-+.++ ++. +++-+||+..
T Consensus 294 tiat~vlt~ia~~pmepi~~~nrlk~Yd~i~ 324 (430)
T KOG2018|consen 294 TIATYVLTQIAQYPMEPIENKNRLKHYDLIH 324 (430)
T ss_pred HHHHHHHHHHhcCCCCcccccchhHHHHHHH
Confidence 9999999999998 443 6677777653
No 48
>PRK06153 hypothetical protein; Provisional
Probab=99.93 E-value=1.5e-25 Score=230.00 Aligned_cols=128 Identities=24% Similarity=0.286 Sum_probs=118.7
Q ss_pred HHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCccc-ccCCCCCCC--cHHHHHHHHHHhhCCC
Q psy13373 145 MGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQV-IHTTHTIGQ--PKVTSAKRFISAINRN 221 (525)
Q Consensus 145 ~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~-l~~~~diG~--~Ka~~~~~~l~~lnp~ 221 (525)
+.|+||++++|+||||||+||.++.+|+++||++|+|||+|.|+.+||+||+ +|+.+|+|+ +|++++++++.++++
T Consensus 169 ~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~- 247 (393)
T PRK06153 169 ALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR- 247 (393)
T ss_pred HHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC-
Confidence 4699999999999999999999999999999999999999999999999998 568999999 999999999999997
Q ss_pred cEEEEeeecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecc
Q psy13373 222 TIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASA 275 (525)
Q Consensus 222 v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~ 275 (525)
.|.++...++.++. +.+.++|+||+|+|+.+.|.+|+++|.++++|+|+++.
T Consensus 248 -~I~~~~~~I~~~n~-~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~ 299 (393)
T PRK06153 248 -GIVPHPEYIDEDNV-DELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGM 299 (393)
T ss_pred -eEEEEeecCCHHHH-HHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeee
Confidence 56777788876654 46799999999999999999999999999999999865
No 49
>KOG2012|consensus
Probab=99.93 E-value=3.9e-26 Score=245.77 Aligned_cols=176 Identities=28% Similarity=0.459 Sum_probs=159.4
Q ss_pred hhhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCC-----ceEEEEeCCcccccCCCcccccCCCCCCC
Q psy13373 131 ERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGV-----GTLGLADYDRVELSNLHRQVIHTTHTIGQ 205 (525)
Q Consensus 131 ~rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GV-----g~i~lvD~d~V~~sNL~Rq~l~~~~diG~ 205 (525)
.|||-|+.. ||..-|+||.+.++++||+|++|||++||++++|| |.|++.|.|.+|.|||||||||++.|||+
T Consensus 411 sRYD~qiav--fG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk 488 (1013)
T KOG2012|consen 411 SRYDGQIAV--FGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDVGK 488 (1013)
T ss_pred Cccccchhh--hchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceeeccccccCc
Confidence 489999999 99999999999999999999999999999999999 47999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhCCCcEEEEeeecCCcch----HhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccce
Q psy13373 206 PKVTSAKRFISAINRNTIVHAYQTLLDTSN----ACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQ 281 (525)
Q Consensus 206 ~Ka~~~~~~l~~lnp~v~v~~~~~~i~~~~----~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~ 281 (525)
+|+++++.....+||+++|+++..++..+. .++|+.+.|+|+++.||..+|.++..-|.-+.+|++.+++.|..|.
T Consensus 489 ~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPLLESGTlGTKGn 568 (1013)
T KOG2012|consen 489 PKSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPLLESGTLGTKGN 568 (1013)
T ss_pred hHHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccchhhccCcCCccc
Confidence 999999999999999999999998876542 4689999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCceeecCCCCCCCCCCCCcC
Q psy13373 282 LCVYNYKGGPCYRCIYPVPPPAETVGTCG 310 (525)
Q Consensus 282 v~v~~~~~~~c~~c~~~~~~~~~~~~~c~ 310 (525)
..++.|..|.-|.-- ..|+.+..+-|.
T Consensus 569 tQVvvPhlTEsY~SS--~DPPEksiP~CT 595 (1013)
T KOG2012|consen 569 TQVVVPHLTESYGSS--RDPPEKSIPVCT 595 (1013)
T ss_pred eeEEecccccccccc--CCCcccCCceee
Confidence 999999888777432 223334455564
No 50
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.90 E-value=2.1e-23 Score=223.11 Aligned_cols=226 Identities=18% Similarity=0.231 Sum_probs=177.1
Q ss_pred CCCCHHHHhhhhhcccc----cccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCccccc
Q psy13373 123 SKFSKDITERYSRQILL----DQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIH 198 (525)
Q Consensus 123 ~~l~~~~~~rysRq~~l----~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~ 198 (525)
+.++++..+||..||.+ ...|.+..++.++++|+|+|+||+|+.++.+|+.+|+++|..+|+|.+ .+|++|
T Consensus 96 ~~L~~a~lERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR---- 170 (637)
T TIGR03693 96 HELESALLDRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR---- 170 (637)
T ss_pred CCCCHHHHHHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH----
Confidence 35889999999999987 222445567779999999999999999999999999999999999999 999999
Q ss_pred CCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEeecCCCH--HHHHHHHHHhHhcC---CcEEEe
Q psy13373 199 TTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNA--PTRYLLNDACLREG---RPLVSA 273 (525)
Q Consensus 199 ~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~--~~r~~l~~~~~~~~---~p~i~~ 273 (525)
||+. ++.+++ .||+++|..++.. ..+...+.++++|+||..+|++ ..-.++|+.|.+.| +|++.+
T Consensus 171 ----IgEl-~e~A~~----~n~~v~v~~i~~~-~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~ 240 (637)
T TIGR03693 171 ----IHEL-AEIAEE----TDDALLVQEIDFA-EDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICL 240 (637)
T ss_pred ----HHHH-HHHHHH----hCCCCceEeccCC-cchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEc
Confidence 6666 555554 8999999988762 3445788899999999999955 44567999999999 555566
Q ss_pred cccCccceEEEEecCCCCceeecCCCCCCCCCCCCcCCCCcccc-hhHHHHHHHHHHHHHHHhCC--CCC-CeEEEEEcC
Q psy13373 274 SALGLEGQLCVYNYKGGPCYRCIYPVPPPAETVGTCGDNGVLGP-VPGVMGTLQAVETIKLLIGL--PVM-DKLLVYDAE 349 (525)
Q Consensus 274 ~~~g~~G~v~v~~~~~~~c~~c~~~~~~~~~~~~~c~~~~~~~~-~~~ivg~~~a~e~lk~l~g~--~~l-~~~~~~d~~ 349 (525)
+..++.|.+ +.|+.++|+.|++.+.......... ....++| +.++++++++.|++|++++. ... ++++.+|..
T Consensus 241 G~~~liGPl--ftPgkTGCWeCa~~RL~e~~L~~~~-~s~a~sPat~AmlAnviv~ElfK~ITg~~~~es~gqlv~lDle 317 (637)
T TIGR03693 241 KQVGLAGPV--FQQHGDECFEAAWHRLHESALHEEN-SLAAFPLAGKAMLANIIVFELFKAAADDEHLEKKNQFFLLDLA 317 (637)
T ss_pred ccceeecce--ECCCCCcHHHHHHHHHHHHhcCCCC-cccccCHHHHHHHHHHHHHHHHHHHhccCccccCCcEEEEEcc
Confidence 666677765 5589999999955211000000011 2234444 48999999999999999987 334 899999999
Q ss_pred CCeeEEeeecCCCCCCcc
Q psy13373 350 LSKFLSVKLRKKKEDCVC 367 (525)
Q Consensus 350 ~~~~~~~~l~~r~p~C~C 367 (525)
+.....+++. |+|.|.|
T Consensus 318 TLE~~WH~vv-krPqC~~ 334 (637)
T TIGR03693 318 TLEGGWHAFI-KHPDASC 334 (637)
T ss_pred ccccccccCC-CCCCCCC
Confidence 9999888885 8999977
No 51
>KOG2016|consensus
Probab=99.88 E-value=3.2e-23 Score=210.65 Aligned_cols=155 Identities=23% Similarity=0.357 Sum_probs=141.5
Q ss_pred HhhhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHH
Q psy13373 130 TERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVT 209 (525)
Q Consensus 130 ~~rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~ 209 (525)
..+||||+|+ ||.+||..|..++|+++|||++|++++|||++.|||.|+++|...|+.+|++.+||...+++|++||+
T Consensus 7 ~~kYDRQlRl--wge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~GksrA~ 84 (523)
T KOG2016|consen 7 KTKYDRQLRL--WGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSRAE 84 (523)
T ss_pred hhHHHHHHHH--HHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhHHH
Confidence 4589999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEeeecCC--cchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceEEEEe
Q psy13373 210 SAKRFISAINRNTIVHAYQTLLD--TSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCVYN 286 (525)
Q Consensus 210 ~~~~~l~~lnp~v~v~~~~~~i~--~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~v~~ 286 (525)
++.+.|+++||+|.-.......+ -.+..++++.|++||.+.-+......+.++|+..++|++++.++|+.|++++..
T Consensus 85 a~~e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl~G~iRI~i 163 (523)
T KOG2016|consen 85 ATLEFLQELNPSVSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGLAGTIRISI 163 (523)
T ss_pred HHHHHHHHhChhhhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecceEEEEEEe
Confidence 99999999999997766554422 234568899999999987777777789999999999999999999999998754
No 52
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.85 E-value=4.1e-21 Score=170.18 Aligned_cols=113 Identities=35% Similarity=0.555 Sum_probs=97.5
Q ss_pred CCCCCcccChhhhHHHHHhcCCCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhh------hhhcCC
Q psy13373 395 ILDPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESL------REDILA 468 (525)
Q Consensus 395 ~~~~~~~is~~el~~~~l~~~~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l------~~~~~~ 468 (525)
++++...|+++++.++ ++++.+++|||||+++||..||||||+|+|+..+... ..++ ...+++
T Consensus 3 ~~~~~~~is~~el~~~-~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~----------~~~~~~~~~~~~~~~~ 71 (122)
T cd01526 3 LLSPEERVSVKDYKNI-LQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSK----------AAELKSLQELPLDNDK 71 (122)
T ss_pred CCCcccccCHHHHHHH-HhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhh----------hhhhhhhhhcccccCC
Confidence 4567789999999999 8775578899999999999999999999999887654 1111 112357
Q ss_pred CCeEEEEcCcChHHHHHHHHHHHccC-CCCCCCcccEEEecccHHHHHhcccCCCCCC
Q psy13373 469 HRHVFVICRRGNDSQKVVQLLKRYVE-RHRPGVVYDIRNIKEGYKGWQKYVDNRIPTY 525 (525)
Q Consensus 469 ~~~Ivv~C~~G~rS~~aa~~L~~~G~-~~~~~~~~~v~~l~GG~~aW~~~~~p~~p~~ 525 (525)
+++||+||++|.||..++..|++.|| ++ +++|+||+.+|..++++.+|.|
T Consensus 72 ~~~ivv~C~~G~rs~~aa~~L~~~G~~~~-------v~~l~GG~~~W~~~~~~~~~~~ 122 (122)
T cd01526 72 DSPIYVVCRRGNDSQTAVRKLKELGLERF-------VRDIIGGLKAWADKVDPTFPLY 122 (122)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHcCCccc-------eeeecchHHHHHHHhCccCCCC
Confidence 89999999999999999999999999 56 9999999999999999999998
No 53
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.82 E-value=7.8e-20 Score=158.57 Aligned_cols=102 Identities=21% Similarity=0.224 Sum_probs=88.0
Q ss_pred CCCcccChhhhHHHHHhcCCCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEc
Q psy13373 397 DPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVIC 476 (525)
Q Consensus 397 ~~~~~is~~el~~~~l~~~~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C 476 (525)
...+.++++++.++ ++++.+.+|||||++.||..||||||+|+|+.++... +.++.. +++++||+||
T Consensus 7 ~~~~~i~~~~l~~~-~~~~~~~~liDvR~~~e~~~ghIpgainip~~~l~~~----------~~~l~~--~~~~~ivv~C 73 (109)
T cd01533 7 RHTPSVSADELAAL-QARGAPLVVLDGRRFDEYRKMTIPGSVSCPGAELVLR----------VGELAP--DPRTPIVVNC 73 (109)
T ss_pred ccCCcCCHHHHHHH-HhcCCCcEEEeCCCHHHHhcCcCCCceeCCHHHHHHH----------HHhcCC--CCCCeEEEEC
Confidence 44568999999999 8765567899999999999999999999999888665 556532 3678999999
Q ss_pred CcChHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHhc
Q psy13373 477 RRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKY 517 (525)
Q Consensus 477 ~~G~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~ 517 (525)
++|.||..++..|+..||++. +++|.||+.+|...
T Consensus 74 ~~G~rs~~a~~~L~~~G~~~~------v~~l~gG~~~W~~~ 108 (109)
T cd01533 74 AGRTRSIIGAQSLINAGLPNP------VAALRNGTQGWTLA 108 (109)
T ss_pred CCCchHHHHHHHHHHCCCCcc------eeEecCCHHHHHhc
Confidence 999999999999999999753 89999999999864
No 54
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.81 E-value=6.2e-20 Score=156.58 Aligned_cols=99 Identities=22% Similarity=0.324 Sum_probs=81.5
Q ss_pred cChhhhHHHHHhcCCCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEcCcChH
Q psy13373 402 LTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRRGND 481 (525)
Q Consensus 402 is~~el~~~~l~~~~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C~~G~r 481 (525)
|+++++.++ ++++.+.+|||||+++||..||||||+|+|+..+...+ +....+....++++++||+||++|.|
T Consensus 1 is~~el~~~-l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~------~~~~~~~~~~~~~~~~ivv~C~~G~r 73 (100)
T cd01523 1 LDPEDLYAR-LLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFDF------LEIEEDILDQLPDDQEVTVICAKEGS 73 (100)
T ss_pred CCHHHHHHH-HHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHHH------HHhhHHHHhhCCCCCeEEEEcCCCCc
Confidence 578999999 88766789999999999999999999999998875441 00001111223488999999999999
Q ss_pred HHHHHHHHHHccCCCCCCCcccEEEecccHHHHH
Q psy13373 482 SQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQ 515 (525)
Q Consensus 482 S~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~ 515 (525)
|..++..|++.||+ +++|+||+.+|+
T Consensus 74 s~~aa~~L~~~G~~--------~~~l~GG~~~W~ 99 (100)
T cd01523 74 SQFVAELLAERGYD--------VDYLAGGMKAWS 99 (100)
T ss_pred HHHHHHHHHHcCce--------eEEeCCcHHhhc
Confidence 99999999999996 899999999996
No 55
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.81 E-value=7.5e-20 Score=156.40 Aligned_cols=99 Identities=21% Similarity=0.331 Sum_probs=82.5
Q ss_pred cccChhhhHHHHHhcCCCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEcCcC
Q psy13373 400 EHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRRG 479 (525)
Q Consensus 400 ~~is~~el~~~~l~~~~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C~~G 479 (525)
..|+++++.++ +++ .+.+|||||+++||..||||||+|+|+..+... ...+.++. ..+++++|||||++|
T Consensus 2 ~~is~~~l~~~-~~~-~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~~-------~~~~~~~~-~~~~~~~ivvyC~~G 71 (101)
T cd01518 2 TYLSPAEWNEL-LED-PEVVLLDVRNDYEYDIGHFKGAVNPDVDTFREF-------PFWLDENL-DLLKGKKVLMYCTGG 71 (101)
T ss_pred CcCCHHHHHHH-HcC-CCEEEEEcCChhhhhcCEeccccCCCcccHhHh-------HHHHHhhh-hhcCCCEEEEECCCc
Confidence 46899999998 875 368999999999999999999999999876542 01122221 124889999999999
Q ss_pred hHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHH
Q psy13373 480 NDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQ 515 (525)
Q Consensus 480 ~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~ 515 (525)
.||..++..|+..||++ |++|.||+.+|.
T Consensus 72 ~rs~~a~~~L~~~G~~~-------v~~l~GG~~~W~ 100 (101)
T cd01518 72 IRCEKASAYLKERGFKN-------VYQLKGGILKYL 100 (101)
T ss_pred hhHHHHHHHHHHhCCcc-------eeeechhHHHHh
Confidence 99999999999999987 999999999996
No 56
>KOG2337|consensus
Probab=99.80 E-value=2.7e-19 Score=184.94 Aligned_cols=222 Identities=22% Similarity=0.294 Sum_probs=166.7
Q ss_pred HHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCC---CCcHHHHHHHHHHhhCCCc
Q psy13373 146 GQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTI---GQPKVTSAKRFISAINRNT 222 (525)
Q Consensus 146 ~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~di---G~~Ka~~~~~~l~~lnp~v 222 (525)
.-+++++.|+++.|+|.|||.||.+|...||+|||++|+.+|..+|-.||.||+.+|. |++||++++++|++++|.+
T Consensus 334 nLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~m 413 (669)
T KOG2337|consen 334 NLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPSM 413 (669)
T ss_pred chhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhCccc
Confidence 4578999999999999999999999999999999999999999999999999999997 5999999999999999988
Q ss_pred EEEEeeecCC-------c----------chHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCccceEEEE
Q psy13373 223 IVHAYQTLLD-------T----------SNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCVY 285 (525)
Q Consensus 223 ~v~~~~~~i~-------~----------~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~v~ 285 (525)
.-..+...+. + +..+.+++++|+|+..+|+.++|++-.-.|...++-+|++ ..|+..++.+.
T Consensus 414 ~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~KivINa-ALGFDsylVMR 492 (669)
T KOG2337|consen 414 EATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVINA-ALGFDSYLVMR 492 (669)
T ss_pred cccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhcceEeee-ecccceeEEEe
Confidence 7776654432 1 1245678999999999999999999888888888878887 56777777442
Q ss_pred ec--------------------CCCCceeecCCCCCCCCCC--CCcCCCCcccchhHHHHHHHHHHHHHHHhCCC-----
Q psy13373 286 NY--------------------KGGPCYRCIYPVPPPAETV--GTCGDNGVLGPVPGVMGTLQAVETIKLLIGLP----- 338 (525)
Q Consensus 286 ~~--------------------~~~~c~~c~~~~~~~~~~~--~~c~~~~~~~~~~~ivg~~~a~e~lk~l~g~~----- 338 (525)
.. ..-.||.|-.-..|..... ..-..-.|..|-.+.+|+-.|.|.+-.+++.|
T Consensus 493 HG~~~~~~~~d~q~s~~~~i~~~qLGCYFCnDV~AP~nSl~DRTLDQqCTVtRPG~a~IA~alAVELlvslLQhP~~~a~ 572 (669)
T KOG2337|consen 493 HGTGRKEASDDGQSSDLKCINGDQLGCYFCNDVVAPGNSLTDRTLDQQCTVTRPGVANIASALAVELLVSLLQHPLGYAQ 572 (669)
T ss_pred cCCCCcccccccccccccccCcccceeEeEcceecCCCcccccchhheeeccCCchhHHHHHHHHHHHHHHHhCcccccc
Confidence 21 1236888876544432211 11112256778888899999999888777653
Q ss_pred -------------CCC-eEEEEEcCCCeeEEeeec-CCCCCC-ccC
Q psy13373 339 -------------VMD-KLLVYDAELSKFLSVKLR-KKKEDC-VCA 368 (525)
Q Consensus 339 -------------~l~-~~~~~d~~~~~~~~~~l~-~r~p~C-~C~ 368 (525)
+++ --..+.+.-..|+.+.+. .+.+.| +|+
T Consensus 573 ~~s~~~~~n~~~tvLG~lPHQIRGfL~nFs~i~~~~~af~qC~ACS 618 (669)
T KOG2337|consen 573 NSSEETEENEPTTVLGILPHQIRGFLHNFSNILPSTQAFDQCTACS 618 (669)
T ss_pred CCCcccccCCCCcccccccHHHHHhhhhhhhhccccccccccchhh
Confidence 011 112333444555555443 567889 883
No 57
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.79 E-value=5.8e-19 Score=150.89 Aligned_cols=100 Identities=25% Similarity=0.393 Sum_probs=85.9
Q ss_pred ccChhhhHHHHHhcC-CCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEcCcC
Q psy13373 401 HLTALDYRDEFLARR-VAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRRG 479 (525)
Q Consensus 401 ~is~~el~~~~l~~~-~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C~~G 479 (525)
+|+++++.++ +.++ .+.+|||||+++||..+|||||+|+|+..+... +..+... +++++||+||++|
T Consensus 1 ~i~~~~l~~~-~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~~----------~~~~~~~-~~~~~vv~~c~~g 68 (101)
T cd01528 1 QISVAELAEW-LADEREEPVLIDVREPEELEIAFLPGFLHLPMSEIPER----------SKELDSD-NPDKDIVVLCHHG 68 (101)
T ss_pred CCCHHHHHHH-HhcCCCCCEEEECCCHHHHhcCcCCCCEecCHHHHHHH----------HHHhccc-CCCCeEEEEeCCC
Confidence 4789999999 8764 357899999999999999999999999887655 4444311 3689999999999
Q ss_pred hHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHhccc
Q psy13373 480 NDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKYVD 519 (525)
Q Consensus 480 ~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~~~ 519 (525)
.||..++..|.+.||++ +++|.||+.+|...++
T Consensus 69 ~rs~~~~~~l~~~G~~~-------v~~l~GG~~~w~~~~~ 101 (101)
T cd01528 69 GRSMQVAQWLLRQGFEN-------VYNLQGGIDAWSLEVD 101 (101)
T ss_pred chHHHHHHHHHHcCCcc-------EEEecCCHHHHhhhcC
Confidence 99999999999999987 9999999999987754
No 58
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.78 E-value=7.9e-19 Score=148.42 Aligned_cols=93 Identities=12% Similarity=0.076 Sum_probs=79.5
Q ss_pred cChhhhHHHHHhcC-CCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEcCcCh
Q psy13373 402 LTALDYRDEFLARR-VAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRRGN 480 (525)
Q Consensus 402 is~~el~~~~l~~~-~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C~~G~ 480 (525)
|+++|+.++ ++++ ...+|||||+++||..||||||+|+|+..+... ..++.. .++++||+||++|.
T Consensus 1 is~~~l~~~-~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~~l~~~----------~~~~~~--~~~~~iv~~c~~G~ 67 (95)
T cd01534 1 IGAAELARW-AAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQE----------TDHFAP--VRGARIVLADDDGV 67 (95)
T ss_pred CCHHHHHHH-HHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHHHHHHH----------HHHhcc--cCCCeEEEECCCCC
Confidence 578999999 8765 357899999999999999999999999877554 333321 25789999999999
Q ss_pred HHHHHHHHHHHccCCCCCCCcccEEEecccHHHHH
Q psy13373 481 DSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQ 515 (525)
Q Consensus 481 rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~ 515 (525)
||..++..|+..||+ |++|.||+.+|.
T Consensus 68 rs~~aa~~L~~~G~~--------v~~l~GG~~~W~ 94 (95)
T cd01534 68 RADMTASWLAQMGWE--------VYVLEGGLAAAL 94 (95)
T ss_pred hHHHHHHHHHHcCCE--------EEEecCcHHHhc
Confidence 999999999999996 899999999996
No 59
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.77 E-value=1.6e-18 Score=149.99 Aligned_cols=100 Identities=23% Similarity=0.325 Sum_probs=87.9
Q ss_pred CCcccChhhhHHHHHhcCCCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEcC
Q psy13373 398 PTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICR 477 (525)
Q Consensus 398 ~~~~is~~el~~~~l~~~~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C~ 477 (525)
..+.++++++.++ ++++ +.+|||||++.||..||||||+|+|+..+... +.++. ++++++|||.
T Consensus 3 ~~~~is~~el~~~-l~~~-~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~~~----------~~~~~----~~~~ivv~c~ 66 (108)
T PRK00162 3 QFECINVEQAHQK-LQEG-GAVLVDIRDPQSFAMGHAPGAFHLTNDSLGAF----------MRQAD----FDTPVMVMCY 66 (108)
T ss_pred CccccCHHHHHHH-HHcC-CCEEEEcCCHHHHhcCCCCCCeECCHHHHHHH----------HHhcC----CCCCEEEEeC
Confidence 4568899999999 8754 57899999999999999999999999887665 55553 7899999999
Q ss_pred cChHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHhcccC
Q psy13373 478 RGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKYVDN 520 (525)
Q Consensus 478 ~G~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~~~p 520 (525)
+|.+|..++..|++.||++ ++++.||+.+|++...|
T Consensus 67 ~g~~s~~a~~~L~~~G~~~-------v~~l~GG~~~w~~~~~~ 102 (108)
T PRK00162 67 HGNSSQGAAQYLLQQGFDV-------VYSIDGGFEAWRRTFPA 102 (108)
T ss_pred CCCCHHHHHHHHHHCCchh-------eEEecCCHHHHHhcCCC
Confidence 9999999999999999997 99999999999887544
No 60
>KOG1530|consensus
Probab=99.75 E-value=2.3e-18 Score=149.15 Aligned_cols=113 Identities=18% Similarity=0.237 Sum_probs=91.6
Q ss_pred CCCcccChhhhHHHHHhcCCCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhhc-CCCCeEEEE
Q psy13373 397 DPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDI-LAHRHVFVI 475 (525)
Q Consensus 397 ~~~~~is~~el~~~~l~~~~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~~-~~~~~Ivv~ 475 (525)
+.+..++.+|++.+ +..+ +.++||||+|+||..||+|.+||||+...... ......++++..-... +.+++|||+
T Consensus 20 ~~~~sv~~~qvk~L-~~~~-~~~llDVRepeEfk~gh~~~siNiPy~~~~~~--~~l~~~eF~kqvg~~kp~~d~eiIf~ 95 (136)
T KOG1530|consen 20 SNPQSVSVEQVKNL-LQHP-DVVLLDVREPEEFKQGHIPASINIPYMSRPGA--GALKNPEFLKQVGSSKPPHDKEIIFG 95 (136)
T ss_pred CCcEEEEHHHHHHH-hcCC-CEEEEeecCHHHhhccCCcceEeccccccccc--cccCCHHHHHHhcccCCCCCCcEEEE
Confidence 45667899999999 8875 68999999999999999999999999654433 2233444555542222 256699999
Q ss_pred cCcChHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHhcccC
Q psy13373 476 CRRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKYVDN 520 (525)
Q Consensus 476 C~~G~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~~~p 520 (525)
|++|.||..|...|...||++ |.++.|||.+|.++..|
T Consensus 96 C~SG~Rs~~A~~~l~s~Gykn-------v~ny~Gs~~~W~~k~~~ 133 (136)
T KOG1530|consen 96 CASGVRSLKATKILVSAGYKN-------VGNYPGSYLAWVDKGGP 133 (136)
T ss_pred eccCcchhHHHHHHHHcCccc-------ccccCccHHHHHHccCC
Confidence 999999999999999999998 99999999999887655
No 61
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.75 E-value=3.3e-18 Score=145.51 Aligned_cols=94 Identities=18% Similarity=0.278 Sum_probs=82.3
Q ss_pred cccChhhhHHHHHhcCCCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEcCcC
Q psy13373 400 EHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRRG 479 (525)
Q Consensus 400 ~~is~~el~~~~l~~~~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C~~G 479 (525)
..|+++++.++ ++.+ .+|||||+++||..+|||||+|+|+..+... ...+ +++++||+||++|
T Consensus 2 ~~i~~~el~~~-~~~~--~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~----------~~~~----~~~~~iv~~c~~g 64 (99)
T cd01527 2 TTISPNDACEL-LAQG--AVLVDIREPDEYLRERIPGARLVPLSQLESE----------GLPL----VGANAIIFHCRSG 64 (99)
T ss_pred CccCHHHHHHH-HHCC--CEEEECCCHHHHHhCcCCCCEECChhHhccc----------ccCC----CCCCcEEEEeCCC
Confidence 46899999998 8764 7899999999999999999999999876543 2223 4789999999999
Q ss_pred hHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHhc
Q psy13373 480 NDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKY 517 (525)
Q Consensus 480 ~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~ 517 (525)
.||..++..|++.||.+ +++|.||+.+|...
T Consensus 65 ~~s~~~~~~L~~~g~~~-------v~~l~gG~~~W~~~ 95 (99)
T cd01527 65 MRTQQNAERLAAISAGE-------AYVLEGGLDAWKAA 95 (99)
T ss_pred chHHHHHHHHHHcCCcc-------EEEeeCCHHHHHHC
Confidence 99999999999999987 99999999999875
No 62
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.75 E-value=4.9e-18 Score=143.28 Aligned_cols=93 Identities=27% Similarity=0.387 Sum_probs=82.8
Q ss_pred ccChhhhHHHHHhcCCCcEEEecCChhhhhc--CCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEcCc
Q psy13373 401 HLTALDYRDEFLARRVAHTLLDVRSVDEFAM--MSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRR 478 (525)
Q Consensus 401 ~is~~el~~~~l~~~~~~~lIDVR~~~E~~~--ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C~~ 478 (525)
.|+++++.++ ++++.+.+|||||++.||.. ||||||+|+|+..+... +..+ +++++|||||++
T Consensus 1 ~i~~~~~~~~-~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~~----------~~~~----~~~~~ivv~c~~ 65 (96)
T cd01444 1 RISVDELAEL-LAAGEAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDDW----------LGDL----DRDRPVVVYCYH 65 (96)
T ss_pred CcCHHHHHHH-HhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHHH----------Hhhc----CCCCCEEEEeCC
Confidence 3688999998 87655689999999999999 99999999999987655 4444 389999999999
Q ss_pred ChHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHH
Q psy13373 479 GNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQ 515 (525)
Q Consensus 479 G~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~ 515 (525)
|.+|..++..|++.||++ +++|+||+.+|.
T Consensus 66 g~~s~~a~~~l~~~G~~~-------v~~l~gG~~~w~ 95 (96)
T cd01444 66 GNSSAQLAQALREAGFTD-------VRSLAGGFEAWR 95 (96)
T ss_pred CChHHHHHHHHHHcCCce-------EEEcCCCHHHhc
Confidence 999999999999999998 999999999996
No 63
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.74 E-value=1.1e-17 Score=139.93 Aligned_cols=89 Identities=21% Similarity=0.322 Sum_probs=78.6
Q ss_pred cChhhhHHHHHhcCCCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEcCcChH
Q psy13373 402 LTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRRGND 481 (525)
Q Consensus 402 is~~el~~~~l~~~~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C~~G~r 481 (525)
++++++.++ +. ++.++||+|++++|..||||||+|+|+.++... +..+ +++++||+||.+|.+
T Consensus 1 ~~~~e~~~~-~~--~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~~~----------~~~~----~~~~~vvl~c~~g~~ 63 (90)
T cd01524 1 VQWHELDNY-RA--DGVTLIDVRTPQEFEKGHIKGAINIPLDELRDR----------LNEL----PKDKEIIVYCAVGLR 63 (90)
T ss_pred CCHHHHHHH-hc--CCCEEEECCCHHHHhcCCCCCCEeCCHHHHHHH----------HHhc----CCCCcEEEEcCCChh
Confidence 478899998 74 367899999999999999999999999887655 4444 378899999999999
Q ss_pred HHHHHHHHHHccCCCCCCCcccEEEecccHHHHH
Q psy13373 482 SQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQ 515 (525)
Q Consensus 482 S~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~ 515 (525)
|..++..|++.|| + +++|+||+.+|+
T Consensus 64 a~~~a~~L~~~G~-~-------v~~l~GG~~~w~ 89 (90)
T cd01524 64 GYIAARILTQNGF-K-------VKNLDGGYKTYS 89 (90)
T ss_pred HHHHHHHHHHCCC-C-------EEEecCCHHHhc
Confidence 9999999999999 6 999999999996
No 64
>PLN02160 thiosulfate sulfurtransferase
Probab=99.73 E-value=1.2e-17 Score=150.84 Aligned_cols=110 Identities=22% Similarity=0.224 Sum_probs=84.3
Q ss_pred CcccChhhhHHHHHhcCCCcEEEecCChhhhhcCCCCCe--EEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEc
Q psy13373 399 TEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIA--SHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVIC 476 (525)
Q Consensus 399 ~~~is~~el~~~~l~~~~~~~lIDVR~~~E~~~ghIpGA--inip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C 476 (525)
...++++++.++ ++++ .+|||||++.||..|||||| +|+|+..+... ......+.+..+...++++++||+||
T Consensus 14 ~~~i~~~e~~~~-~~~~--~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~--~~l~~~~~~~~~~~~~~~~~~IivyC 88 (136)
T PLN02160 14 VVSVDVSQAKTL-LQSG--HQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQ--GRVKNQEFLEQVSSLLNPADDILVGC 88 (136)
T ss_pred eeEeCHHHHHHH-HhCC--CEEEECCCHHHHhcCCCCCcceecccchhcCcc--cccCCHHHHHHHHhccCCCCcEEEEC
Confidence 567899999998 8753 58999999999999999999 89998443211 00000111222222235789999999
Q ss_pred CcChHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHhcccC
Q psy13373 477 RRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKYVDN 520 (525)
Q Consensus 477 ~~G~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~~~p 520 (525)
++|.||..++..|...||++ |++|.|||.+|++...|
T Consensus 89 ~sG~RS~~Aa~~L~~~G~~~-------v~~l~GG~~~W~~~g~p 125 (136)
T PLN02160 89 QSGARSLKATTELVAAGYKK-------VRNKGGGYLAWVDHSFP 125 (136)
T ss_pred CCcHHHHHHHHHHHHcCCCC-------eeecCCcHHHHhhCCCC
Confidence 99999999999999999998 99999999999887444
No 65
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.72 E-value=1.8e-17 Score=146.69 Aligned_cols=98 Identities=12% Similarity=0.178 Sum_probs=81.0
Q ss_pred cccChhhhHHHHHhcC-----CCcEEEecCChhhhhcCCCCCeEEeChh-hHHHHHhhcCCchHHHHhhh--hhcCCCCe
Q psy13373 400 EHLTALDYRDEFLARR-----VAHTLLDVRSVDEFAMMSLNIASHATMA-DVQLMFAEAGECPAFLESLR--EDILAHRH 471 (525)
Q Consensus 400 ~~is~~el~~~~l~~~-----~~~~lIDVR~~~E~~~ghIpGAinip~~-~l~~~~~~~~~~~~~l~~l~--~~~~~~~~ 471 (525)
..|+++++.++ ++++ .+++|||||+++||..||||||+|+|+. .+... +.... ..++++++
T Consensus 2 ~~Is~~el~~~-l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~~----------~~~~~~~~~~~~~~~ 70 (121)
T cd01530 2 KRISPETLARL-LQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEEF----------FLDKPGVASKKKRRV 70 (121)
T ss_pred CccCHHHHHHH-HhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHHH----------HHHhhcccccCCCCE
Confidence 36899999999 8763 4688999999999999999999999997 45544 22110 11358999
Q ss_pred EEEEcC-cChHHHHHHHHHHHc------------cCCCCCCCcccEEEecccHHHHH
Q psy13373 472 VFVICR-RGNDSQKVVQLLKRY------------VERHRPGVVYDIRNIKEGYKGWQ 515 (525)
Q Consensus 472 Ivv~C~-~G~rS~~aa~~L~~~------------G~~~~~~~~~~v~~l~GG~~aW~ 515 (525)
||+||. +|.||..++..|++. ||.+ |++|+|||.+|.
T Consensus 71 vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~-------v~~L~GG~~~f~ 120 (121)
T cd01530 71 LIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPE-------IYILEGGYKNFF 120 (121)
T ss_pred EEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCe-------EEEEcChhHhhc
Confidence 999997 999999999999985 8887 999999999994
No 66
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.72 E-value=2.3e-17 Score=147.48 Aligned_cols=106 Identities=24% Similarity=0.279 Sum_probs=80.3
Q ss_pred cChhhhHHHHHhcCCCcEEEecCChhhhhcCCCCCeEEeChhhHHHH-Hh-----hc-------------CCch-HHHHh
Q psy13373 402 LTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLM-FA-----EA-------------GECP-AFLES 461 (525)
Q Consensus 402 is~~el~~~~l~~~~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~-~~-----~~-------------~~~~-~~l~~ 461 (525)
||++++.++ +++ +.+|||||+++||..||||||+|+|+..+... +. .. ...+ +.+.+
T Consensus 1 ~s~~el~~~-l~~--~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (128)
T cd01520 1 ITAEDLLAL-RKA--DGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRILNE 77 (128)
T ss_pred CCHHHHHHH-Hhc--CCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHHHH
Confidence 688999998 873 57999999999999999999999999654321 00 00 0001 11122
Q ss_pred hh-hhcCCCCeEEEEcC-cChHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHhcc
Q psy13373 462 LR-EDILAHRHVFVICR-RGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKYV 518 (525)
Q Consensus 462 l~-~~~~~~~~Ivv~C~-~G~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~~ 518 (525)
+. .+++++++||+||. +|.||..++..|+.+|| + |++|.||+.+|+..+
T Consensus 78 ~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~-------v~~L~GG~~aw~~~~ 128 (128)
T cd01520 78 AWEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-D-------VPLLEGGYKAYRKFV 128 (128)
T ss_pred HHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-c-------eeEeCCcHHHHHhhC
Confidence 21 24568999999997 68999999999999999 5 999999999998753
No 67
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.72 E-value=2.4e-17 Score=141.75 Aligned_cols=102 Identities=13% Similarity=0.195 Sum_probs=80.5
Q ss_pred ChhhhHHHHHhcCCCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhh--hcCCCCeEEEEcCcCh
Q psy13373 403 TALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLRE--DILAHRHVFVICRRGN 480 (525)
Q Consensus 403 s~~el~~~~l~~~~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~--~~~~~~~Ivv~C~~G~ 480 (525)
|++++.++ ++.+++.+|||||++.||..||||||+|+|+..+.... ....+.+.++.. ..+++++||+||++|.
T Consensus 2 ~~~~~~~~-l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~ 77 (106)
T cd01519 2 SFEEVKNL-PNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDAL---ALSEEEFEKKYGFPKPSKDKELIFYCKAGV 77 (106)
T ss_pred cHHHHHHh-cCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhhh---CCCHHHHHHHhcccCCCCCCeEEEECCCcH
Confidence 67888888 87234689999999999999999999999998865430 111111222211 2347899999999999
Q ss_pred HHHHHHHHHHHccCCCCCCCcccEEEecccHHHHH
Q psy13373 481 DSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQ 515 (525)
Q Consensus 481 rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~ 515 (525)
+|..++..|+.+||++ |++|.||+.+|.
T Consensus 78 ~s~~~~~~l~~~G~~~-------v~~~~Gg~~~W~ 105 (106)
T cd01519 78 RSKAAAELARSLGYEN-------VGNYPGSWLDWA 105 (106)
T ss_pred HHHHHHHHHHHcCCcc-------ceecCCcHHHHc
Confidence 9999999999999998 999999999996
No 68
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.72 E-value=1.1e-17 Score=147.12 Aligned_cols=103 Identities=26% Similarity=0.325 Sum_probs=83.1
Q ss_pred cChhhhHHHHHhcCCCcEEEecCChhhhh-cCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEcCcCh
Q psy13373 402 LTALDYRDEFLARRVAHTLLDVRSVDEFA-MMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRRGN 480 (525)
Q Consensus 402 is~~el~~~~l~~~~~~~lIDVR~~~E~~-~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C~~G~ 480 (525)
||++|+.++ ++++++.+|||||++.||+ .||||||+|+|+.++... ........++....+++++||+||++|.
T Consensus 1 is~~el~~~-l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~----~~~~~~~~~l~~~~~~~~~ivv~C~~G~ 75 (117)
T cd01522 1 LTPAEAWAL-LQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDM----EINPNFLAELEEKVGKDRPVLLLCRSGN 75 (117)
T ss_pred CCHHHHHHH-HHhCCCeEEEECCCHHHHhcccCCCCceecchhhcccc----ccCHHHHHHHHhhCCCCCeEEEEcCCCc
Confidence 588999999 9875578999999999999 999999999999876432 0000112233222257899999999999
Q ss_pred HHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHh
Q psy13373 481 DSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQK 516 (525)
Q Consensus 481 rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~ 516 (525)
+|..++..|++.||.+ ++.+.|||.+|+.
T Consensus 76 rs~~aa~~L~~~G~~~-------v~~l~gG~~~~~~ 104 (117)
T cd01522 76 RSIAAAEAAAQAGFTN-------VYNVLEGFEGDLD 104 (117)
T ss_pred cHHHHHHHHHHCCCCe-------EEECcCceecCCC
Confidence 9999999999999998 9999999999954
No 69
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.72 E-value=2.1e-17 Score=141.93 Aligned_cols=103 Identities=12% Similarity=0.127 Sum_probs=79.9
Q ss_pred cChhhhHHHHHhcC-CCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEcCcCh
Q psy13373 402 LTALDYRDEFLARR-VAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRRGN 480 (525)
Q Consensus 402 is~~el~~~~l~~~-~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C~~G~ 480 (525)
||++++.++ ++++ .+.+|||||++.||..||||||+|+|+..+.... .....+...+++.. .++++||+||++|.
T Consensus 1 is~~~l~~~-l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~-~~~~~~~~~~~~~~--~~~~~vv~~c~~g~ 76 (105)
T cd01525 1 ISVYDVIRL-LDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKE-GELEQLPTVPRLEN--YKGKIIVIVSHSHK 76 (105)
T ss_pred CCHHHHHHH-HhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhcccc-cccccccchHHHHh--hcCCeEEEEeCCCc
Confidence 588999999 8763 3578999999999999999999999998764210 00000111122221 24789999999999
Q ss_pred HHHHHHHHHHHccCCCCCCCcccEEEecccHHHHH
Q psy13373 481 DSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQ 515 (525)
Q Consensus 481 rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~ 515 (525)
+|..++..|+..||++ |++|.||+.+|+
T Consensus 77 ~s~~~a~~L~~~G~~~-------v~~l~GG~~a~~ 104 (105)
T cd01525 77 HAALFAAFLVKCGVPR-------VCILDGGINALK 104 (105)
T ss_pred cHHHHHHHHHHcCCCC-------EEEEeCcHHHhc
Confidence 9999999999999998 999999999995
No 70
>PRK01415 hypothetical protein; Validated
Probab=99.71 E-value=5.8e-17 Score=159.21 Aligned_cols=106 Identities=17% Similarity=0.317 Sum_probs=88.0
Q ss_pred CCcccChhhhHHHHHhcCCCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEcC
Q psy13373 398 PTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICR 477 (525)
Q Consensus 398 ~~~~is~~el~~~~l~~~~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C~ 477 (525)
....|+|+++.++ ++++ +++|||||++.||..||||||+|+|+..+.+. ...+... ...+++++|++||.
T Consensus 110 ~g~~i~p~e~~~l-l~~~-~~vvIDVRn~~E~~~Ghi~gAinip~~~f~e~-------~~~~~~~-~~~~k~k~Iv~yCt 179 (247)
T PRK01415 110 KGEYIEPKDWDEF-ITKQ-DVIVIDTRNDYEVEVGTFKSAINPNTKTFKQF-------PAWVQQN-QELLKGKKIAMVCT 179 (247)
T ss_pred CccccCHHHHHHH-HhCC-CcEEEECCCHHHHhcCCcCCCCCCChHHHhhh-------HHHHhhh-hhhcCCCeEEEECC
Confidence 3578999999999 9864 78999999999999999999999998876542 0001111 11248999999999
Q ss_pred cChHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHhcccC
Q psy13373 478 RGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKYVDN 520 (525)
Q Consensus 478 ~G~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~~~p 520 (525)
+|.||..|+..|++.||++ |++|+||+.+|.+.+.+
T Consensus 180 gGiRs~kAa~~L~~~Gf~~-------Vy~L~GGi~~w~~~~~~ 215 (247)
T PRK01415 180 GGIRCEKSTSLLKSIGYDE-------VYHLKGGILQYLEDTQN 215 (247)
T ss_pred CChHHHHHHHHHHHcCCCc-------EEEechHHHHHHHhccc
Confidence 9999999999999999998 99999999999987654
No 71
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.69 E-value=5.8e-17 Score=137.20 Aligned_cols=89 Identities=21% Similarity=0.209 Sum_probs=71.5
Q ss_pred Hhc-CCCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEcCcChHHHHHHHHHH
Q psy13373 412 LAR-RVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRRGNDSQKVVQLLK 490 (525)
Q Consensus 412 l~~-~~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C~~G~rS~~aa~~L~ 490 (525)
+++ +++.+|||||++.||..||||||+|+|+..+... .+.++.+. ..+++++||+||.+|.+|..++..|+
T Consensus 6 l~~~~~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~~-------~~~~~~~~-~~~~~~~ivv~c~~g~~s~~~~~~l~ 77 (96)
T cd01529 6 LGEHEPGTALLDVRAEDEYAAGHLPGKRSIPGAALVLR-------SQELQALE-APGRATRYVLTCDGSLLARFAAQELL 77 (96)
T ss_pred HhcCCCCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcCC-------HHHHHHhh-cCCCCCCEEEEeCChHHHHHHHHHHH
Confidence 443 3467899999999999999999999998765432 01122111 12478999999999999999999999
Q ss_pred HccCCCCCCCcccEEEecccHHHHH
Q psy13373 491 RYVERHRPGVVYDIRNIKEGYKGWQ 515 (525)
Q Consensus 491 ~~G~~~~~~~~~~v~~l~GG~~aW~ 515 (525)
..||++ |++|.||+.+|.
T Consensus 78 ~~G~~~-------v~~l~GG~~~W~ 95 (96)
T cd01529 78 ALGGKP-------VALLDGGTSAWV 95 (96)
T ss_pred HcCCCC-------EEEeCCCHHHhc
Confidence 999987 999999999996
No 72
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.69 E-value=9.6e-17 Score=139.47 Aligned_cols=96 Identities=18% Similarity=0.171 Sum_probs=81.6
Q ss_pred cccChhhhHHHHHhcC-CCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEcCc
Q psy13373 400 EHLTALDYRDEFLARR-VAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRR 478 (525)
Q Consensus 400 ~~is~~el~~~~l~~~-~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C~~ 478 (525)
..++++++.++ +..+ ++.+|||||++.+|..||||||+|+|+..+... ....+ +++++||+||.+
T Consensus 8 ~~~s~~el~~~-l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~---------~~~~i----~~~~~vvvyc~~ 73 (110)
T cd01521 8 FETDCWDVAIA-LKNGKPDFVLVDVRSAEAYARGHVPGAINLPHREICEN---------ATAKL----DKEKLFVVYCDG 73 (110)
T ss_pred eecCHHHHHHH-HHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHHHhhhH---------hhhcC----CCCCeEEEEECC
Confidence 47899999999 8764 468999999999999999999999999886532 02233 488999999998
Q ss_pred C--hHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHhc
Q psy13373 479 G--NDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKY 517 (525)
Q Consensus 479 G--~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~ 517 (525)
| .+|..++..|++.||+ +++|.||+.+|+..
T Consensus 74 g~~~~s~~~a~~l~~~G~~--------v~~l~GG~~~W~~~ 106 (110)
T cd01521 74 PGCNGATKAALKLAELGFP--------VKEMIGGLDWWKRE 106 (110)
T ss_pred CCCchHHHHHHHHHHcCCe--------EEEecCCHHHHHHC
Confidence 7 4899999999999994 89999999999876
No 73
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.69 E-value=9.5e-17 Score=159.73 Aligned_cols=108 Identities=18% Similarity=0.219 Sum_probs=87.8
Q ss_pred CCCcccChhhhHHHHHhcC-----CCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCe
Q psy13373 397 DPTEHLTALDYRDEFLARR-----VAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRH 471 (525)
Q Consensus 397 ~~~~~is~~el~~~~l~~~-----~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~ 471 (525)
.....++++++.++ ++++ ++.+|||||++.||+.||||||+|+|+.++.+. ...+...... .++++
T Consensus 107 ~~~~~is~~el~~~-l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~~-------~~~l~~~~~~-~kdk~ 177 (257)
T PRK05320 107 GRAPSVDAATLKRW-LDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTEF-------PEALAAHRAD-LAGKT 177 (257)
T ss_pred CcCceeCHHHHHHH-HhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhhh-------HHHHHhhhhh-cCCCe
Confidence 34568999999998 8763 247899999999999999999999999877543 0112222111 16899
Q ss_pred EEEEcCcChHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHhcccC
Q psy13373 472 VFVICRRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKYVDN 520 (525)
Q Consensus 472 Ivv~C~~G~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~~~p 520 (525)
|++||++|.||..|+..|++.||++ |++|+|||.+|.+++..
T Consensus 178 IvvyC~~G~Rs~~Aa~~L~~~Gf~~-------V~~L~GGi~~w~~~~~~ 219 (257)
T PRK05320 178 VVSFCTGGIRCEKAAIHMQEVGIDN-------VYQLEGGILKYFEEVGG 219 (257)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCcc-------eEEeccCHHHHHHhCCC
Confidence 9999999999999999999999988 99999999999987643
No 74
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.69 E-value=8.3e-17 Score=140.51 Aligned_cols=99 Identities=12% Similarity=0.205 Sum_probs=80.9
Q ss_pred cccChhhhHHHHHhcC-CCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhhc--CCCCeEEEEc
Q psy13373 400 EHLTALDYRDEFLARR-VAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDI--LAHRHVFVIC 476 (525)
Q Consensus 400 ~~is~~el~~~~l~~~-~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~~--~~~~~Ivv~C 476 (525)
+.|+++++.++ +..+ .+.+|||||++ ||..||||||+|+|+..+... +.++.... +++++||+||
T Consensus 2 ~~is~~~l~~~-~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~~----------~~~~~~~~~~~~~~~iv~yC 69 (113)
T cd01531 2 SYISPAQLKGW-IRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKAQ----------LNQLVQLLSGSKKDTVVFHC 69 (113)
T ss_pred CcCCHHHHHHH-HHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHhhC----------HHHHHHHHhcCCCCeEEEEe
Confidence 46899999999 8764 45789999999 999999999999999987654 44443222 4678999999
Q ss_pred C-cChHHHHHHHHHHH--------ccCCCCCCCcccEEEecccHHHHHhc
Q psy13373 477 R-RGNDSQKVVQLLKR--------YVERHRPGVVYDIRNIKEGYKGWQKY 517 (525)
Q Consensus 477 ~-~G~rS~~aa~~L~~--------~G~~~~~~~~~~v~~l~GG~~aW~~~ 517 (525)
. +|.||..++..|.+ .||.+ |++|.||+.+|++.
T Consensus 70 ~~~~~r~~~aa~~l~~~~~~~~~~~G~~~-------v~~l~gG~~~w~~~ 112 (113)
T cd01531 70 ALSQVRGPSAARKFLRYLDEEDLETSKFE-------VYVLHGGFNAWESS 112 (113)
T ss_pred ecCCcchHHHHHHHHHHHHHhccccCCCe-------EEEEcChHHHHHhh
Confidence 8 67899988888754 38987 99999999999864
No 75
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.69 E-value=5.9e-17 Score=138.37 Aligned_cols=101 Identities=21% Similarity=0.261 Sum_probs=79.8
Q ss_pred cChhhhHHHHHhcCCCcEEEecCChhhh-hcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEcCcCh
Q psy13373 402 LTALDYRDEFLARRVAHTLLDVRSVDEF-AMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRRGN 480 (525)
Q Consensus 402 is~~el~~~~l~~~~~~~lIDVR~~~E~-~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C~~G~ 480 (525)
|+++++.++ ++++ +.+|||||++.+| ..||||||+|+|+..+........ . + ....++++++|||||.+|.
T Consensus 1 is~~el~~~-~~~~-~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~~~~~~---~-~--~~~~~~~~~~ivv~c~~g~ 72 (103)
T cd01447 1 LSPEDARAL-LGSP-GVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWADPDS---P-Y--HKPAFAEDKPFVFYCASGW 72 (103)
T ss_pred CCHHHHHHH-HhCC-CeEEEECCCHHHHHhcCCCCCcEEcccchhhhhcCccc---c-c--cccCCCCCCeEEEEcCCCC
Confidence 578999998 8763 6789999999998 579999999999877653310000 0 0 0112358899999999999
Q ss_pred HHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHhc
Q psy13373 481 DSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKY 517 (525)
Q Consensus 481 rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~ 517 (525)
+|..++..|+..||++ |++|.||+.+|...
T Consensus 73 ~s~~~~~~l~~~G~~~-------v~~l~Gg~~~w~~~ 102 (103)
T cd01447 73 RSALAGKTLQDMGLKP-------VYNIEGGFKDWKEA 102 (103)
T ss_pred cHHHHHHHHHHcChHH-------hEeecCcHHHHhhc
Confidence 9999999999999997 89999999999753
No 76
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.68 E-value=2e-16 Score=136.65 Aligned_cols=104 Identities=19% Similarity=0.329 Sum_probs=78.6
Q ss_pred ChhhhHHHHHhcCCCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCch----HHHHhhhhhcCCCCeEEEEcCc
Q psy13373 403 TALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECP----AFLESLREDILAHRHVFVICRR 478 (525)
Q Consensus 403 s~~el~~~~l~~~~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~----~~l~~l~~~~~~~~~Ivv~C~~ 478 (525)
||+|+.++ + ++.+++|||||++.+|..||||||+|+|+..+... ...... ..........+++++||+||.+
T Consensus 1 s~~el~~~-l-~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~ 76 (113)
T PF00581_consen 1 SPEELKEM-L-ENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPD--EPSLSEDKLDEFLKELGKKIDKDKDIVFYCSS 76 (113)
T ss_dssp -HHHHHHH-H-TTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSS--SSBCHHHHHHHHHHHHTHGSTTTSEEEEEESS
T ss_pred CHHHHHhh-h-hCCCeEEEEeCCHHHHHcCCCCCCccccccccccc--cccccccccccccccccccccccccceeeeec
Confidence 68999999 8 44589999999999999999999999999554100 000000 1122222234688899999999
Q ss_pred ChHHHHHHHH-----HHHccCCCCCCCcccEEEecccHHHHHhc
Q psy13373 479 GNDSQKVVQL-----LKRYVERHRPGVVYDIRNIKEGYKGWQKY 517 (525)
Q Consensus 479 G~rS~~aa~~-----L~~~G~~~~~~~~~~v~~l~GG~~aW~~~ 517 (525)
|.++..++.. |...||++ |+.|+|||.+|.++
T Consensus 77 ~~~~~~~~~~~~~~~l~~~g~~~-------v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 77 GWRSGSAAAARVAWILKKLGFKN-------VYILDGGFEAWKAE 113 (113)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTSS-------EEEETTHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHcCCCC-------EEEecChHHHHhcC
Confidence 9988887777 88899987 99999999999863
No 77
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.68 E-value=1.3e-16 Score=137.72 Aligned_cols=94 Identities=19% Similarity=0.232 Sum_probs=80.2
Q ss_pred HhcCCCcEEEecCChhhhhcCCCCC-eEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEcCcChHHHHHHHHHH
Q psy13373 412 LARRVAHTLLDVRSVDEFAMMSLNI-ASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRRGNDSQKVVQLLK 490 (525)
Q Consensus 412 l~~~~~~~lIDVR~~~E~~~ghIpG-Ainip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C~~G~rS~~aa~~L~ 490 (525)
+....+.+|||||++.||..+|||| ++|+|+.++... ...+. .+++++|+|||++|.||..|+..|+
T Consensus 15 ~~~~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~----------~~~~~--~~~~~~ivv~C~~G~rS~~aa~~L~ 82 (110)
T COG0607 15 LLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAA----------ENLLE--LPDDDPIVVYCASGVRSAAAAAALK 82 (110)
T ss_pred hhccCCCEEEeccChhHhhhcCCCcceeeeecccchhh----------hcccc--cCCCCeEEEEeCCCCChHHHHHHHH
Confidence 3344578999999999999999999 999999998775 11111 2489999999999999999999999
Q ss_pred HccCCCCCCCcccEEEecccHHHHHhcccCCCCC
Q psy13373 491 RYVERHRPGVVYDIRNIKEGYKGWQKYVDNRIPT 524 (525)
Q Consensus 491 ~~G~~~~~~~~~~v~~l~GG~~aW~~~~~p~~p~ 524 (525)
+.||++ ++++.||+.+|.....|..+.
T Consensus 83 ~~G~~~-------~~~l~gG~~~w~~~~~~~~~~ 109 (110)
T COG0607 83 LAGFTN-------VYNLDGGIDAWKGAGLPLVRG 109 (110)
T ss_pred HcCCcc-------ccccCCcHHHHHhcCCCcccC
Confidence 999986 689999999999998877654
No 78
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.66 E-value=2.2e-16 Score=138.54 Aligned_cols=104 Identities=19% Similarity=0.211 Sum_probs=81.4
Q ss_pred cChhhhHHHHHhcCCCcEEEecCChhhhhc-----------CCCCCeEEeChhhHHHHHhhcCCchHHHHhhhh--hcCC
Q psy13373 402 LTALDYRDEFLARRVAHTLLDVRSVDEFAM-----------MSLNIASHATMADVQLMFAEAGECPAFLESLRE--DILA 468 (525)
Q Consensus 402 is~~el~~~~l~~~~~~~lIDVR~~~E~~~-----------ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~--~~~~ 468 (525)
++++++.++ +++ .+.+|||||++.||.. ||||||+|+|+..+... .......+.+.++.. ++++
T Consensus 1 ~s~~~l~~~-l~~-~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 77 (118)
T cd01449 1 VTAEEVLAN-LDS-GDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDE-DGTFKSPEELRALFAALGITP 77 (118)
T ss_pred CCHHHHHHh-cCC-CCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCC-CCCcCCHHHHHHHHHHcCCCC
Confidence 478899998 865 3689999999999987 99999999999876532 001111222333322 2457
Q ss_pred CCeEEEEcCcChHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHH
Q psy13373 469 HRHVFVICRRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQ 515 (525)
Q Consensus 469 ~~~Ivv~C~~G~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~ 515 (525)
+++||+||++|.+|..++..|+.+||++ +++|+||+.+|.
T Consensus 78 ~~~iv~yc~~g~~s~~~~~~l~~~G~~~-------v~~l~GG~~~W~ 117 (118)
T cd01449 78 DKPVIVYCGSGVTACVLLLALELLGYKN-------VRLYDGSWSEWG 117 (118)
T ss_pred CCCEEEECCcHHHHHHHHHHHHHcCCCC-------eeeeCChHHHhc
Confidence 8999999999999999999999999987 999999999996
No 79
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.66 E-value=2.4e-16 Score=132.50 Aligned_cols=82 Identities=18% Similarity=0.289 Sum_probs=68.6
Q ss_pred CCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEcCcChH--HHHHHHHHHHcc
Q psy13373 416 VAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRRGND--SQKVVQLLKRYV 493 (525)
Q Consensus 416 ~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C~~G~r--S~~aa~~L~~~G 493 (525)
.+.+|||||+++||..+|||||+|+|+..+.... ...+. +++++|||||++|.+ |..++..|++.|
T Consensus 9 ~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~---------~~~~~---~~~~~ivl~c~~G~~~~s~~aa~~L~~~G 76 (92)
T cd01532 9 EEIALIDVREEDPFAQSHPLWAANLPLSRLELDA---------WVRIP---RRDTPIVVYGEGGGEDLAPRAARRLSELG 76 (92)
T ss_pred CCeEEEECCCHHHHhhCCcccCeeCCHHHHHhhh---------HhhCC---CCCCeEEEEeCCCCchHHHHHHHHHHHcC
Confidence 3689999999999999999999999998764320 22222 258899999999987 688999999999
Q ss_pred CCCCCCCcccEEEecccHHHHHh
Q psy13373 494 ERHRPGVVYDIRNIKEGYKGWQK 516 (525)
Q Consensus 494 ~~~~~~~~~~v~~l~GG~~aW~~ 516 (525)
|++ |++|+||+.+|++
T Consensus 77 ~~~-------v~~l~GG~~~W~~ 92 (92)
T cd01532 77 YTD-------VALLEGGLQGWRA 92 (92)
T ss_pred ccC-------EEEccCCHHHHcC
Confidence 998 9999999999963
No 80
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.66 E-value=3.3e-16 Score=133.99 Aligned_cols=79 Identities=18% Similarity=0.233 Sum_probs=69.4
Q ss_pred CcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEcCcChHHHHHHHHHHHccCCC
Q psy13373 417 AHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRRGNDSQKVVQLLKRYVERH 496 (525)
Q Consensus 417 ~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C~~G~rS~~aa~~L~~~G~~~ 496 (525)
...+||||+++||..||||||+|+|+.++... +.++.. +++++||+||++|.||..++..|++.||++
T Consensus 18 ~~~lIDvR~~~ef~~ghIpgAinip~~~l~~~----------l~~~~~--~~~~~vvlyC~~G~rS~~aa~~L~~~G~~~ 85 (101)
T TIGR02981 18 AEHWIDVRIPEQYQQEHIQGAINIPLKEIKEH----------IATAVP--DKNDTVKLYCNAGRQSGMAKDILLDMGYTH 85 (101)
T ss_pred CCEEEECCCHHHHhcCCCCCCEECCHHHHHHH----------HHHhCC--CCCCeEEEEeCCCHHHHHHHHHHHHcCCCe
Confidence 56799999999999999999999999888765 555431 467899999999999999999999999997
Q ss_pred CCCCcccEEEecccHHHHH
Q psy13373 497 RPGVVYDIRNIKEGYKGWQ 515 (525)
Q Consensus 497 ~~~~~~~v~~l~GG~~aW~ 515 (525)
++++ ||+.+|.
T Consensus 86 -------v~~~-GG~~~~~ 96 (101)
T TIGR02981 86 -------AENA-GGIKDIA 96 (101)
T ss_pred -------EEec-CCHHHhh
Confidence 7775 9999996
No 81
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.65 E-value=4.2e-16 Score=137.68 Aligned_cols=107 Identities=15% Similarity=0.110 Sum_probs=83.5
Q ss_pred cChhhhHHHHHhcCCCcEEEecCCh-------hhhhcCCCCCeEEeChhhHHHH---HhhcCCchHHHHhhhh--hcCCC
Q psy13373 402 LTALDYRDEFLARRVAHTLLDVRSV-------DEFAMMSLNIASHATMADVQLM---FAEAGECPAFLESLRE--DILAH 469 (525)
Q Consensus 402 is~~el~~~~l~~~~~~~lIDVR~~-------~E~~~ghIpGAinip~~~l~~~---~~~~~~~~~~l~~l~~--~~~~~ 469 (525)
++++++.++ +.+ ++.+|||+|++ ++|..||||||+|+|+.++... +.....+.+.+.+... +++++
T Consensus 2 i~~~~l~~~-l~~-~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (122)
T cd01448 2 VSPDWLAEH-LDD-PDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISND 79 (122)
T ss_pred cCHHHHHHH-hCC-CCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCC
Confidence 688999998 876 36789999999 9999999999999999876542 1111111222222221 34689
Q ss_pred CeEEEEcCc-ChHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHhc
Q psy13373 470 RHVFVICRR-GNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKY 517 (525)
Q Consensus 470 ~~Ivv~C~~-G~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~ 517 (525)
++||+||++ |.+|..++..|+.+||++ |++|.||+.+|...
T Consensus 80 ~~vv~~c~~g~~~a~~~~~~l~~~G~~~-------v~~l~GG~~~W~~~ 121 (122)
T cd01448 80 DTVVVYDDGGGFFAARAWWTLRYFGHEN-------VRVLDGGLQAWKAE 121 (122)
T ss_pred CEEEEECCCCCccHHHHHHHHHHcCCCC-------EEEecCCHHHHHhC
Confidence 999999999 589999999999999998 99999999999864
No 82
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.65 E-value=5.3e-16 Score=135.47 Aligned_cols=97 Identities=9% Similarity=0.137 Sum_probs=75.9
Q ss_pred cccChhhhHHHHHhcC-----CCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhh--cCCCCeE
Q psy13373 400 EHLTALDYRDEFLARR-----VAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLRED--ILAHRHV 472 (525)
Q Consensus 400 ~~is~~el~~~~l~~~-----~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~--~~~~~~I 472 (525)
..|+++++.++ ++++ .+.+|||||++ ||..||||||+|+|+..+... +.++... .++.++|
T Consensus 2 ~~is~~el~~~-l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~~----------~~~~~~~~~~~~~~~i 69 (113)
T cd01443 2 KYISPEELVAL-LENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQT----------LPQVYALFSLAGVKLA 69 (113)
T ss_pred cccCHHHHHHH-HhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHHH----------HHHHHHHhhhcCCCEE
Confidence 46899999999 8875 46789999999 999999999999999887654 2222210 1356799
Q ss_pred EEEcCc-ChHHHHHHHHHHH----ccC--CCCCCCcccEEEecccHHHHH
Q psy13373 473 FVICRR-GNDSQKVVQLLKR----YVE--RHRPGVVYDIRNIKEGYKGWQ 515 (525)
Q Consensus 473 vv~C~~-G~rS~~aa~~L~~----~G~--~~~~~~~~~v~~l~GG~~aW~ 515 (525)
|+||.+ |.||..++..|.. .|| .+ +++|.||+.+|.
T Consensus 70 v~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~-------v~~l~GG~~~w~ 112 (113)
T cd01443 70 IFYCGSSQGRGPRAARWFADYLRKVGESLPK-------SYILTGGIKAWY 112 (113)
T ss_pred EEECCCCCcccHHHHHHHHHHHhccCCCCCe-------EEEECChhhhhc
Confidence 999997 6888887776554 476 44 999999999995
No 83
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.65 E-value=7e-16 Score=140.83 Aligned_cols=92 Identities=14% Similarity=0.102 Sum_probs=80.3
Q ss_pred hHHHHHhcCCCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEcCcChHHHHHH
Q psy13373 407 YRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRRGNDSQKVV 486 (525)
Q Consensus 407 l~~~~l~~~~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C~~G~rS~~aa 486 (525)
+.++ ++++.+.+|||||++.+|..||||||+|+|...+... +.++. ++++|||||.+|.+|..++
T Consensus 2 l~~~-l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~~~----------l~~l~----~~~~vVv~c~~g~~a~~aa 66 (145)
T cd01535 2 LAAW-LGEGGQTAVVDVTASANYVKRHIPGAWWVLRAQLAQA----------LEKLP----AAERYVLTCGSSLLARFAA 66 (145)
T ss_pred hHHH-HhCCCCeEEEECCCHHHHHcCCCCCceeCCHHHHHHH----------HHhcC----CCCCEEEEeCCChHHHHHH
Confidence 5566 7666568999999999999999999999999887766 66664 6789999999999999999
Q ss_pred HHHHHccCCCCCCCcccEEEecccHHHHHhcccC
Q psy13373 487 QLLKRYVERHRPGVVYDIRNIKEGYKGWQKYVDN 520 (525)
Q Consensus 487 ~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~~~p 520 (525)
..|+..||.+ |++|.||+.+|+....|
T Consensus 67 ~~L~~~G~~~-------v~~L~GG~~aW~~~g~p 93 (145)
T cd01535 67 ADLAALTVKP-------VFVLEGGTAAWIAAGLP 93 (145)
T ss_pred HHHHHcCCcC-------eEEecCcHHHHHHCCCC
Confidence 9999999987 99999999999987444
No 84
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.64 E-value=8.4e-16 Score=157.23 Aligned_cols=108 Identities=15% Similarity=0.245 Sum_probs=89.2
Q ss_pred CCCcccChhhhHHHHHhcCCCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEc
Q psy13373 397 DPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVIC 476 (525)
Q Consensus 397 ~~~~~is~~el~~~~l~~~~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C 476 (525)
.....++++++.++ ++++ +.+|||||++.||..||||||+|+|+..+.+. ...+.+.. ...++++||+||
T Consensus 109 ~~~~~is~~el~~~-l~~~-~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~~-------~~~l~~~~-~~~kdk~IvvyC 178 (314)
T PRK00142 109 NVGTYLKPKEVNEL-LDDP-DVVFIDMRNDYEYEIGHFENAIEPDIETFREF-------PPWVEENL-DPLKDKKVVMYC 178 (314)
T ss_pred cCCcccCHHHHHHH-hcCC-CeEEEECCCHHHHhcCcCCCCEeCCHHHhhhh-------HHHHHHhc-CCCCcCeEEEEC
Confidence 44568999999999 8764 78999999999999999999999999887643 01122111 123789999999
Q ss_pred CcChHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHhcccCC
Q psy13373 477 RRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKYVDNR 521 (525)
Q Consensus 477 ~~G~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~~~p~ 521 (525)
.+|.||..++.+|++.||++ |++|.|||.+|.+.+.+.
T Consensus 179 ~~G~Rs~~aa~~L~~~Gf~~-------V~~L~GGi~~w~~~~~~~ 216 (314)
T PRK00142 179 TGGIRCEKASAWMKHEGFKE-------VYQLEGGIITYGEDPETQ 216 (314)
T ss_pred CCCcHHHHHHHHHHHcCCCc-------EEEecchHHHHHHhhccc
Confidence 99999999999999999987 999999999999876543
No 85
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.63 E-value=6.7e-16 Score=129.59 Aligned_cols=96 Identities=27% Similarity=0.323 Sum_probs=73.8
Q ss_pred CCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhh-hhhcCCCCeEEEEcCcChHHHHHHHHHHHccC
Q psy13373 416 VAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESL-REDILAHRHVFVICRRGNDSQKVVQLLKRYVE 494 (525)
Q Consensus 416 ~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l-~~~~~~~~~Ivv~C~~G~rS~~aa~~L~~~G~ 494 (525)
++.+|||||++.||..+|||||+|+|+..+.... ...........+ ....+++++||+||.+|.++..++..|++.||
T Consensus 3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~ 81 (100)
T smart00450 3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRR-GELDILEFEELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGF 81 (100)
T ss_pred CCEEEEECCCHHHhccCCCCCceeCCHHHhccCC-CCcCHHHHHHHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCC
Confidence 4689999999999999999999999998775440 000000000001 11235789999999999999999999999999
Q ss_pred CCCCCCcccEEEecccHHHHHhccc
Q psy13373 495 RHRPGVVYDIRNIKEGYKGWQKYVD 519 (525)
Q Consensus 495 ~~~~~~~~~v~~l~GG~~aW~~~~~ 519 (525)
++ |++|.||+.+|.+...
T Consensus 82 ~~-------v~~l~GG~~~w~~~~~ 99 (100)
T smart00450 82 KN-------VYLLDGGYKEWSAAGP 99 (100)
T ss_pred Cc-------eEEecCCHHHHHhcCC
Confidence 98 9999999999987643
No 86
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.63 E-value=1.1e-15 Score=131.51 Aligned_cols=79 Identities=19% Similarity=0.264 Sum_probs=69.1
Q ss_pred CcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEcCcChHHHHHHHHHHHccCCC
Q psy13373 417 AHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRRGNDSQKVVQLLKRYVERH 496 (525)
Q Consensus 417 ~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C~~G~rS~~aa~~L~~~G~~~ 496 (525)
+-+|||+|+++||..+|||||+|+|+.++... +.++.. +++++||+||++|.||..++..|.+.||++
T Consensus 20 ~~~lIDvR~~~ef~~ghIpGAiniP~~~l~~~----------l~~l~~--~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~ 87 (104)
T PRK10287 20 AEHWIDVRVPEQYQQEHVQGAINIPLKEVKER----------IATAVP--DKNDTVKLYCNAGRQSGQAKEILSEMGYTH 87 (104)
T ss_pred CCEEEECCCHHHHhcCCCCccEECCHHHHHHH----------HHhcCC--CCCCeEEEEeCCChHHHHHHHHHHHcCCCe
Confidence 45799999999999999999999999887665 555531 367899999999999999999999999987
Q ss_pred CCCCcccEEEecccHHHHH
Q psy13373 497 RPGVVYDIRNIKEGYKGWQ 515 (525)
Q Consensus 497 ~~~~~~~v~~l~GG~~aW~ 515 (525)
+++ .||+.+|.
T Consensus 88 -------v~~-~GG~~~~~ 98 (104)
T PRK10287 88 -------AEN-AGGLKDIA 98 (104)
T ss_pred -------EEe-cCCHHHHh
Confidence 776 69999996
No 87
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.62 E-value=2e-15 Score=140.38 Aligned_cols=111 Identities=16% Similarity=0.088 Sum_probs=81.2
Q ss_pred CCCcccChhhhHHHHHhcCCCcEEEecCChh----hhhcC---------CCCCeEEeChhhHHHHHhhcCCchHHHHhhh
Q psy13373 397 DPTEHLTALDYRDEFLARRVAHTLLDVRSVD----EFAMM---------SLNIASHATMADVQLMFAEAGECPAFLESLR 463 (525)
Q Consensus 397 ~~~~~is~~el~~~~l~~~~~~~lIDVR~~~----E~~~g---------hIpGAinip~~~l~~~~~~~~~~~~~l~~l~ 463 (525)
.....|+++++.++ ++++ +.+|||||+++ ||..| |||||+|+|+...... .. .........+.
T Consensus 33 ~~~~~vs~~el~~~-l~~~-~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l-~~-~~~~~~~~~l~ 108 (162)
T TIGR03865 33 KGARVLDTEAAQAL-LARG-PVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNL-AP-AWQAYFRRGLE 108 (162)
T ss_pred CCccccCHHHHHHH-HhCC-CcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCCC-CC-chhHHHHHHHH
Confidence 44678999999999 9875 68899999876 46544 9999999996322111 00 00000112221
Q ss_pred h--hcCCCCeEEEEcCcCh-HHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHhcc
Q psy13373 464 E--DILAHRHVFVICRRGN-DSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKYV 518 (525)
Q Consensus 464 ~--~~~~~~~Ivv~C~~G~-rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~~ 518 (525)
. ..+++++||+||++|. +|..++..|+..||++ |++|+|||.+|+...
T Consensus 109 ~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~-------V~~l~GG~~aW~~aG 159 (162)
T TIGR03865 109 RATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSN-------VYWYPDGTDGWQAAG 159 (162)
T ss_pred HhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcc-------eEEecCCHHHHHHcC
Confidence 1 1258999999999996 8999999999999998 999999999998773
No 88
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.61 E-value=2.1e-15 Score=124.54 Aligned_cols=88 Identities=23% Similarity=0.405 Sum_probs=74.0
Q ss_pred hHHHHHhcCCCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEcCcChHHHHHH
Q psy13373 407 YRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRRGNDSQKVV 486 (525)
Q Consensus 407 l~~~~l~~~~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C~~G~rS~~aa 486 (525)
+.++ ++ +++..|||+|++.||..+|||||+|+|+..+... . .....+++++||+||.+|.+|..++
T Consensus 2 ~~~~-~~-~~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~----------~--~~~~~~~~~~vv~~c~~~~~a~~~~ 67 (89)
T cd00158 2 LKEL-LD-DEDAVLLDVREPEEYAAGHIPGAINIPLSELEER----------A--ALLELDKDKPIVVYCRSGNRSARAA 67 (89)
T ss_pred hHHH-hc-CCCeEEEECCCHHHHhccccCCCEecchHHHhhH----------H--HhhccCCCCeEEEEeCCCchHHHHH
Confidence 4455 55 3478999999999999999999999999887654 1 1111248899999999999999999
Q ss_pred HHHHHccCCCCCCCcccEEEecccHHHHH
Q psy13373 487 QLLKRYVERHRPGVVYDIRNIKEGYKGWQ 515 (525)
Q Consensus 487 ~~L~~~G~~~~~~~~~~v~~l~GG~~aW~ 515 (525)
..|++.||.+ +++|.||+.+|.
T Consensus 68 ~~l~~~G~~~-------v~~l~gG~~~w~ 89 (89)
T cd00158 68 KLLRKAGGTN-------VYNLEGGMLAWK 89 (89)
T ss_pred HHHHHhCccc-------EEEecCChhhcC
Confidence 9999999998 999999999994
No 89
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=99.58 E-value=2.5e-15 Score=124.24 Aligned_cols=77 Identities=49% Similarity=1.005 Sum_probs=57.5
Q ss_pred CCCceeecCCCCCCCCCCCCcCCCCcccchhHHHHHHHHHHHHHHHhCC-CCC-CeEEEEEcCCCeeEEeeecCCCCCC-
Q psy13373 289 GGPCYRCIYPVPPPAETVGTCGDNGVLGPVPGVMGTLQAVETIKLLIGL-PVM-DKLLVYDAELSKFLSVKLRKKKEDC- 365 (525)
Q Consensus 289 ~~~c~~c~~~~~~~~~~~~~c~~~~~~~~~~~ivg~~~a~e~lk~l~g~-~~l-~~~~~~d~~~~~~~~~~l~~r~p~C- 365 (525)
.+|||+|+|+.. ++...+|++.|+++|+++++|+++|+|+||+|+|. +++ +++++||+++++|+++++. |+|+|
T Consensus 2 ~~pC~rCl~p~~--~~~~~~C~~~GVlg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~~~~~~i~~~-k~~~C~ 78 (84)
T PF05237_consen 2 KTPCYRCLFPEP--PESAPTCAEAGVLGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLNMSFRSIRIK-KNPDCP 78 (84)
T ss_dssp T---HHHHHTTS--S--TTSSSTS-B-HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTTTEEEEEE-----TT-T
T ss_pred CCceehhcCCCC--CccCCCccccccccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCCCeEEEEecC-CCccCc
Confidence 589999999987 55667999999999999999999999999999998 777 9999999999999999996 99999
Q ss_pred ccC
Q psy13373 366 VCA 368 (525)
Q Consensus 366 ~C~ 368 (525)
+|+
T Consensus 79 ~C~ 81 (84)
T PF05237_consen 79 VCG 81 (84)
T ss_dssp TT-
T ss_pred CcC
Confidence 993
No 90
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.56 E-value=1.3e-14 Score=152.76 Aligned_cols=99 Identities=19% Similarity=0.274 Sum_probs=85.1
Q ss_pred CcccChhhhHHHHHhcCCCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEcCc
Q psy13373 399 TEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRR 478 (525)
Q Consensus 399 ~~~is~~el~~~~l~~~~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C~~ 478 (525)
.+.|+++++.++ +++ +.+|||||+++||..||||||+|+|+..+... +.++. .+++++||+||++
T Consensus 2 v~~is~~el~~~-l~~--~~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~~----------~~~~~--~~~~~~IvvyC~~ 66 (376)
T PRK08762 2 IREISPAEARAR-AAQ--GAVLIDVREAHERASGQAEGALRIPRGFLELR----------IETHL--PDRDREIVLICAS 66 (376)
T ss_pred CceeCHHHHHHH-HhC--CCEEEECCCHHHHhCCcCCCCEECCHHHHHHH----------Hhhhc--CCCCCeEEEEcCC
Confidence 356899999998 865 47899999999999999999999999877654 44431 1478999999999
Q ss_pred ChHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHhccc
Q psy13373 479 GNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKYVD 519 (525)
Q Consensus 479 G~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~~~ 519 (525)
|.||..++..|++.||++ |++|+||+.+|++...
T Consensus 67 G~rs~~aa~~L~~~G~~~-------v~~l~GG~~~W~~~g~ 100 (376)
T PRK08762 67 GTRSAHAAATLRELGYTR-------VASVAGGFSAWKDAGL 100 (376)
T ss_pred CcHHHHHHHHHHHcCCCc-------eEeecCcHHHHHhcCC
Confidence 999999999999999998 9999999999987643
No 91
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.52 E-value=3.4e-14 Score=146.32 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=88.2
Q ss_pred ccChhhhHHHHHhcCCCcEEEecCChhhh-----------hcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhh--hcC
Q psy13373 401 HLTALDYRDEFLARRVAHTLLDVRSVDEF-----------AMMSLNIASHATMADVQLMFAEAGECPAFLESLRE--DIL 467 (525)
Q Consensus 401 ~is~~el~~~~l~~~~~~~lIDVR~~~E~-----------~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~--~~~ 467 (525)
.++.+++.+. ++.+ +..|||+|++.|| ..||||||+|+|+..+.+. .......+.++++.. +++
T Consensus 191 ~~~~~~v~~~-~~~~-~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~-~~~~~~~~el~~~~~~~gi~ 267 (320)
T PLN02723 191 VWTLEQVKKN-IEDK-TYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDS-SQTLLPAEELKKRFEQEGIS 267 (320)
T ss_pred eecHHHHHHh-hcCC-CeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCC-CCCCCCHHHHHHHHHhcCCC
Confidence 4688999888 7654 6789999999998 5699999999999876543 112233344544432 457
Q ss_pred CCCeEEEEcCcChHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHhcccCCCCC
Q psy13373 468 AHRHVFVICRRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKYVDNRIPT 524 (525)
Q Consensus 468 ~~~~Ivv~C~~G~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~~~p~~p~ 524 (525)
++++||+||.+|.||..++..|+.+||++ |++|.|||.+|... +.+|+
T Consensus 268 ~~~~iv~yC~sG~~A~~~~~~L~~~G~~~-------v~~YdGs~~eW~~~--~~~Pv 315 (320)
T PLN02723 268 LDSPIVASCGTGVTACILALGLHRLGKTD-------VPVYDGSWTEWGAL--PDTPV 315 (320)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCC-------eeEeCCCHHHHhcC--CCCCc
Confidence 89999999999999999999999999987 99999999999854 55664
No 92
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.49 E-value=1.2e-13 Score=125.00 Aligned_cols=106 Identities=14% Similarity=0.134 Sum_probs=80.8
Q ss_pred cChhhhHHHHHhc---CCCcEEEecCCh--------hhhhc------------CCCCCeEEeChhhHHHH---HhhcCCc
Q psy13373 402 LTALDYRDEFLAR---RVAHTLLDVRSV--------DEFAM------------MSLNIASHATMADVQLM---FAEAGEC 455 (525)
Q Consensus 402 is~~el~~~~l~~---~~~~~lIDVR~~--------~E~~~------------ghIpGAinip~~~l~~~---~~~~~~~ 455 (525)
+|++++.+. +++ +++..|||+|.+ ++|.. ||||||+|+|+..+... +......
T Consensus 1 vs~e~l~~~-l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~ 79 (138)
T cd01445 1 KSTEQLAEN-LEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPS 79 (138)
T ss_pred CCHHHHHHH-hhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCC
Confidence 478899988 873 246899999987 89988 99999999999766432 0001111
Q ss_pred hHHHHhhhh--hcCCCCeEEEEcCc---ChHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHH
Q psy13373 456 PAFLESLRE--DILAHRHVFVICRR---GNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQ 515 (525)
Q Consensus 456 ~~~l~~l~~--~~~~~~~Ivv~C~~---G~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~ 515 (525)
.+.+.++.. +++++++||+||.+ |.++..++..|+.+|+++ |+.|.||+.+|.
T Consensus 80 ~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~-------v~ildGG~~~W~ 137 (138)
T cd01445 80 EAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPD-------VAILDGGFFEWF 137 (138)
T ss_pred HHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCC-------eEEeCCCHHHhh
Confidence 123333322 46789999999986 788888999999999998 999999999995
No 93
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.49 E-value=9.2e-14 Score=139.13 Aligned_cols=114 Identities=20% Similarity=0.173 Sum_probs=90.0
Q ss_pred CcccChhhhHHHHHhcCCCcEEEecCChhhhhc----------CCCCCeEEeChhhHHHHHhhcCCchHHHHhhh--hhc
Q psy13373 399 TEHLTALDYRDEFLARRVAHTLLDVRSVDEFAM----------MSLNIASHATMADVQLMFAEAGECPAFLESLR--EDI 466 (525)
Q Consensus 399 ~~~is~~el~~~~l~~~~~~~lIDVR~~~E~~~----------ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~--~~~ 466 (525)
....+.+++... ++.+ ..+|||+|++++|.. ||||||+|+|+..+.+. ....+..+.++.+. .++
T Consensus 155 ~~~~~~~~~~~~-~~~~-~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~-~~~~~~~~~~~~l~~~~gi 231 (285)
T COG2897 155 KAVVDATLVADA-LEVP-AVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDD-GGLFKSPEEIARLYADAGI 231 (285)
T ss_pred cccCCHHHHHHH-hcCC-CeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcC-CCccCcHHHHHHHHHhcCC
Confidence 345566777777 7664 678999999999988 99999999999998763 12222333345544 357
Q ss_pred CCCCeEEEEcCcChHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHhcccCCCCC
Q psy13373 467 LAHRHVFVICRRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKYVDNRIPT 524 (525)
Q Consensus 467 ~~~~~Ivv~C~~G~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~~~p~~p~ 524 (525)
+++++||+||++|.+|......|+.+|+.+ +.+|+|++.+|.+..+ .|+
T Consensus 232 ~~~~~vI~yCgsG~~As~~~~al~~lg~~~-------~~lYdGSWsEWg~~~~--~PV 280 (285)
T COG2897 232 DPDKEVIVYCGSGVRASVTWLALAELGGPN-------NRLYDGSWSEWGSDPD--RPV 280 (285)
T ss_pred CCCCCEEEEcCCchHHHHHHHHHHHhCCCC-------cccccChHHHhhcCCC--Ccc
Confidence 899999999999999999999999999987 7899999999986644 553
No 94
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.49 E-value=7e-14 Score=142.64 Aligned_cols=97 Identities=23% Similarity=0.299 Sum_probs=70.9
Q ss_pred CcEEEecCChhhhhcCCCCCeEEeChhhHHHH------Hhhc--------------CCchHHHHhhhhhcCCCCeEEEEc
Q psy13373 417 AHTLLDVRSVDEFAMMSLNIASHATMADVQLM------FAEA--------------GECPAFLESLREDILAHRHVFVIC 476 (525)
Q Consensus 417 ~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~------~~~~--------------~~~~~~l~~l~~~~~~~~~Ivv~C 476 (525)
...|||||+|.||..||||||+|+|+....++ +... ....+.+.++....++++.||+||
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvyC 81 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLYC 81 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEEE
Confidence 35899999999999999999999999653322 0000 001112333322223555699999
Q ss_pred C-cChHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHhcccCC
Q psy13373 477 R-RGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKYVDNR 521 (525)
Q Consensus 477 ~-~G~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~~~p~ 521 (525)
. +|.||..++.+|+..|| + +++|.||+.+|+..+.+.
T Consensus 82 ~~gG~RS~~aa~~L~~~G~-~-------v~~L~GG~~aw~~~~~~~ 119 (311)
T TIGR03167 82 WRGGMRSGSLAWLLAQIGF-R-------VPRLEGGYKAYRRFVIDQ 119 (311)
T ss_pred CCCChHHHHHHHHHHHcCC-C-------EEEecChHHHHHHhhhhh
Confidence 5 79999999999999999 4 899999999999877544
No 95
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.46 E-value=1.4e-13 Score=139.32 Aligned_cols=110 Identities=13% Similarity=0.177 Sum_probs=83.5
Q ss_pred cChhhhHHHHHhcCCCcEEEecCChhhhh-----------cCCCCCeEEeChhhHHHHHhhcCCchHHHHhhh--hhcCC
Q psy13373 402 LTALDYRDEFLARRVAHTLLDVRSVDEFA-----------MMSLNIASHATMADVQLMFAEAGECPAFLESLR--EDILA 468 (525)
Q Consensus 402 is~~el~~~~l~~~~~~~lIDVR~~~E~~-----------~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~--~~~~~ 468 (525)
.+.+++... ++.+ +.+|||+|+++||. .||||||+|+|+..+.+. ......+.++.+. .++++
T Consensus 155 ~~~~~v~~~-~~~~-~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 230 (281)
T PRK11493 155 VRLTDVLLA-SHEK-TAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVRE--GELKTTDELDAIFFGRGVSF 230 (281)
T ss_pred ecHHHHHHh-hcCC-CcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCC--CCcCCHHHHHHHHHhcCCCC
Confidence 455666655 5543 57899999999995 699999999999887532 1222233344432 23568
Q ss_pred CCeEEEEcCcChHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHhcccCCCCC
Q psy13373 469 HRHVFVICRRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKYVDNRIPT 524 (525)
Q Consensus 469 ~~~Ivv~C~~G~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~~~p~~p~ 524 (525)
+++||+||++|.||..++..|+.+||++ +++|.|||.+|... +.+|+
T Consensus 231 ~~~ii~yC~~G~~A~~~~~~l~~~G~~~-------v~~y~Gs~~eW~~~--~~~P~ 277 (281)
T PRK11493 231 DRPIIASCGSGVTAAVVVLALATLDVPN-------VKLYDGAWSEWGAR--ADLPV 277 (281)
T ss_pred CCCEEEECCcHHHHHHHHHHHHHcCCCC-------ceeeCCCHHHHccC--CCCCc
Confidence 8999999999999999999999999998 99999999999842 34553
No 96
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.45 E-value=3.5e-13 Score=139.41 Aligned_cols=106 Identities=27% Similarity=0.358 Sum_probs=76.6
Q ss_pred ChhhhHHHHHhcCCCcEEEecCChhhhhcCCCCCeEEeChhhHHHH------HhhcC--------------CchHHHHhh
Q psy13373 403 TALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLM------FAEAG--------------ECPAFLESL 462 (525)
Q Consensus 403 s~~el~~~~l~~~~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~------~~~~~--------------~~~~~l~~l 462 (525)
...++.++ +.+ +..|||||+|.||..||||||+|+|+....++ |...+ ...+.+.+.
T Consensus 4 ~~~~~~~~-~~~--~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~ 80 (345)
T PRK11784 4 DAQDFRAL-FLN--DTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEA 80 (345)
T ss_pred cHHHHHHH-HhC--CCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHH
Confidence 45677776 543 57999999999999999999999999654332 00000 001111211
Q ss_pred hhhc-CCCCeEEEEc-CcChHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHhccc
Q psy13373 463 REDI-LAHRHVFVIC-RRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKYVD 519 (525)
Q Consensus 463 ~~~~-~~~~~Ivv~C-~~G~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~~~ 519 (525)
.... +++++||+|| ++|.||..++..|+..|| + ++.|.||+.+|++.+.
T Consensus 81 ~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~-------v~~L~GG~~awr~~~~ 131 (345)
T PRK11784 81 WADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-D-------VPRLEGGYKAYRRFVI 131 (345)
T ss_pred HHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-C-------cEEEcCCHHHHHHhhH
Confidence 1111 2688999999 578999999999999999 4 8999999999998654
No 97
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.44 E-value=3e-13 Score=149.84 Aligned_cols=112 Identities=13% Similarity=0.096 Sum_probs=88.2
Q ss_pred cccChhhhHHHHHhcCCCcEEEecCChhhhh--------cCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhh--hcCCC
Q psy13373 400 EHLTALDYRDEFLARRVAHTLLDVRSVDEFA--------MMSLNIASHATMADVQLMFAEAGECPAFLESLRE--DILAH 469 (525)
Q Consensus 400 ~~is~~el~~~~l~~~~~~~lIDVR~~~E~~--------~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~--~~~~~ 469 (525)
..++.+++.+. ++++ +..|||+|+++||. .||||||+|+|+..+... .......+.+.++.. +++++
T Consensus 147 ~~v~~e~v~~~-l~~~-~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~-~~~lk~~~el~~~~~~~Gi~~~ 223 (610)
T PRK09629 147 PTATREYLQSR-LGAA-DLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDK-ARNLRIRQDMPEILRDLGITPD 223 (610)
T ss_pred ccccHHHHHHh-hCCC-CcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCC-CCCCCCHHHHHHHHHHcCCCCC
Confidence 46789999988 8654 67899999999994 799999999999765432 112233344554433 45789
Q ss_pred CeEEEEcCcChHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHhcccCCCC
Q psy13373 470 RHVFVICRRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKYVDNRIP 523 (525)
Q Consensus 470 ~~Ivv~C~~G~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~~~p~~p 523 (525)
++||+||.+|.||..++..|+.+||++ |++|+|||.+|... +.+|
T Consensus 224 ~~VVvYC~sG~rAa~~~~~L~~lG~~~-------V~~YdGsw~eW~~~--~~lP 268 (610)
T PRK09629 224 KEVITHCQTHHRSGFTYLVAKALGYPR-------VKAYAGSWGEWGNH--PDTP 268 (610)
T ss_pred CCEEEECCCChHHHHHHHHHHHcCCCC-------cEEeCCCHHHHhCC--CCCc
Confidence 999999999999999999999999998 99999999999854 4444
No 98
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.44 E-value=5.5e-13 Score=119.60 Aligned_cols=106 Identities=19% Similarity=0.195 Sum_probs=77.0
Q ss_pred cChhhhHHHHHhcC-CCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCC--------chHHHHhhhhhcCCCCeE
Q psy13373 402 LTALDYRDEFLARR-VAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGE--------CPAFLESLREDILAHRHV 472 (525)
Q Consensus 402 is~~el~~~~l~~~-~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~--------~~~~l~~l~~~~~~~~~I 472 (525)
|+++++.++ ++++ ++.+|||||++.+|..+|||||+|+|+..+......... ..+....+.. .++++|
T Consensus 2 is~~~l~~~-l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~V 78 (132)
T cd01446 2 IDCAWLAAL-LREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRR--GESLAV 78 (132)
T ss_pred cCHHHHHHH-HhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHHHhc--CCCCeE
Confidence 789999999 8864 468999999999999999999999999875432000000 0011122221 157899
Q ss_pred EEEcCcChH---------HHHHHHHHHH--ccCCCCCCCcccEEEecccHHHHHhc
Q psy13373 473 FVICRRGND---------SQKVVQLLKR--YVERHRPGVVYDIRNIKEGYKGWQKY 517 (525)
Q Consensus 473 vv~C~~G~r---------S~~aa~~L~~--~G~~~~~~~~~~v~~l~GG~~aW~~~ 517 (525)
||||.+|.+ +..++..|.. .++.+ |+.|+||+.+|+..
T Consensus 79 VvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------v~~L~GG~~~w~~~ 127 (132)
T cd01446 79 VVYDESSSDRERLREDSTAESVLGKLLRKLQEGCS-------VYLLKGGFEQFSSE 127 (132)
T ss_pred EEEeCCCcchhhccccchHHHHHHHHHHhcCCCce-------EEEEcchHHHHHhh
Confidence 999998865 6667777776 35565 99999999999875
No 99
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.40 E-value=7.5e-13 Score=134.04 Aligned_cols=109 Identities=12% Similarity=0.135 Sum_probs=82.5
Q ss_pred cccChhhhHHHHHhcCCCcEEEecCC----------hhhhhcCCCCCeEEeChhhHHHHHhh---cCCchHHHHhhhh--
Q psy13373 400 EHLTALDYRDEFLARRVAHTLLDVRS----------VDEFAMMSLNIASHATMADVQLMFAE---AGECPAFLESLRE-- 464 (525)
Q Consensus 400 ~~is~~el~~~~l~~~~~~~lIDVR~----------~~E~~~ghIpGAinip~~~l~~~~~~---~~~~~~~l~~l~~-- 464 (525)
..++++++.+. ++++ +.+|||+|+ +.+|..||||||+|+|+..+...... .....+.+.++..
T Consensus 5 ~lvs~~~l~~~-l~~~-~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (281)
T PRK11493 5 WFVAADWLAEH-IDDP-EIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMREL 82 (281)
T ss_pred cccCHHHHHHh-cCCC-CeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHc
Confidence 35899999999 8764 689999997 78999999999999998765432000 0011222333322
Q ss_pred hcCCCCeEEEEcCcChH-HHHHHHHHHHccCCCCCCCcccEEEecccHHHHHhc
Q psy13373 465 DILAHRHVFVICRRGND-SQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKY 517 (525)
Q Consensus 465 ~~~~~~~Ivv~C~~G~r-S~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~ 517 (525)
+++++++||+||.+|.+ +..++..|+..||++ |++|.||+.+|.+.
T Consensus 83 Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~-------v~~l~GG~~~W~~~ 129 (281)
T PRK11493 83 GVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEK-------VSILAGGLAGWQRD 129 (281)
T ss_pred CCCCCCEEEEECCCCCchHHHHHHHHHHhcCCc-------EEEcCCCHHHHHHc
Confidence 35789999999998764 667888999999998 99999999999875
No 100
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.36 E-value=1.5e-12 Score=144.28 Aligned_cols=112 Identities=16% Similarity=0.062 Sum_probs=85.5
Q ss_pred cccChhhhHHHHHhcCCCcEEEecCChhhhhcCCCCCeEEeChhhHHHHH---hhcCCchHHHHhhhh--hcCCCCeEEE
Q psy13373 400 EHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMF---AEAGECPAFLESLRE--DILAHRHVFV 474 (525)
Q Consensus 400 ~~is~~el~~~~l~~~~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~---~~~~~~~~~l~~l~~--~~~~~~~Ivv 474 (525)
..|++++|.++ ++++ +.+|||||++++|..||||||+|+|+..+...- .......+.++++.. +++++++|||
T Consensus 9 ~lIs~~eL~~~-l~~~-~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VVv 86 (610)
T PRK09629 9 LVIEPNDLLER-LDAP-ELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYVV 86 (610)
T ss_pred ceecHHHHHHH-hcCC-CEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Confidence 46899999999 9874 689999999999999999999999986542210 000011122333322 3578999999
Q ss_pred EcCcC-hHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHhcccC
Q psy13373 475 ICRRG-NDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKYVDN 520 (525)
Q Consensus 475 ~C~~G-~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~~~p 520 (525)
||++| .++..++..|+.+|+++ |++|.||+.+|.....|
T Consensus 87 Yd~~g~~~A~R~~w~L~~~G~~~-------V~iLdGG~~aW~~ag~p 126 (610)
T PRK09629 87 YDDEGGGWAGRFIWLLDVIGHSG-------YHYLDGGVLAWEAQALP 126 (610)
T ss_pred ECCCCCchHHHHHHHHHHcCCCC-------EEEcCCCHHHHHHcCCc
Confidence 99977 57888999999999987 99999999999886543
No 101
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.35 E-value=1.2e-11 Score=122.17 Aligned_cols=194 Identities=17% Similarity=0.209 Sum_probs=131.5
Q ss_pred CHHHHHHHHHHhHhcCCc-EEEecccCccceEEEEecCCCCceeecCCCCCCCCCCCCcCCCCcccchhHHHHHHHHHHH
Q psy13373 252 NAPTRYLLNDACLREGRP-LVSASALGLEGQLCVYNYKGGPCYRCIYPVPPPAETVGTCGDNGVLGPVPGVMGTLQAVET 330 (525)
Q Consensus 252 ~~~~r~~l~~~~~~~~~p-~i~~~~~g~~G~v~v~~~~~~~c~~c~~~~~~~~~~~~~c~~~~~~~~~~~ivg~~~a~e~ 330 (525)
..+.+..+-..|.+.++. -|..+..|..|+|.. +.. .....
T Consensus 19 p~~~~~~l~~~~~~~~vkGrillA~EGINgtvsG--------------------------------~~e------~~~~~ 60 (308)
T COG1054 19 PEALRDPLLALCKALGVKGRILLAHEGINGTVSG--------------------------------SAE------AIEAY 60 (308)
T ss_pred HHHHHHHHHHHHHHcCceeEEEEccCCcceeEec--------------------------------CHH------HHHHH
Confidence 344567788888887764 455556666665422 011 12234
Q ss_pred HHHHhCCCCC--CeEEEEEcCCCeeEEeeecCCCCCCccCCCCccccccchhhccccC-CCCCCCccCCCCCcccChhhh
Q psy13373 331 IKLLIGLPVM--DKLLVYDAELSKFLSVKLRKKKEDCVCAHPADTQLVDYEVFCSSRA-NDKTPDISILDPTEHLTALDY 407 (525)
Q Consensus 331 lk~l~g~~~l--~~~~~~d~~~~~~~~~~l~~r~p~C~C~~~~~~~l~~y~~~cg~~~-~~~~~~~~~~~~~~~is~~el 407 (525)
+++|...+.+ -++-+--.....|..+++..| ++|.++ |... .+.. -.-...|+|+|+
T Consensus 61 ~~~l~a~~~f~~l~~K~s~~~~~pF~r~kVk~k--------kEIV~l-------g~~ddv~p~-----~~vG~yl~p~~w 120 (308)
T COG1054 61 MAWLRADPGFADLRFKISEADEKPFWRLKVKLK--------KEIVAL-------GVEDDVDPL-----ENVGTYLSPKDW 120 (308)
T ss_pred HHHHHhCcccccceeeeccccCCCcceEEEeeh--------hhheec-------CCCCCcCcc-----ccccCccCHHHH
Confidence 4445444333 122222223577888877633 367775 3332 1111 122568999999
Q ss_pred HHHHHhcCCCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEcCcChHHHHHHH
Q psy13373 408 RDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRRGNDSQKVVQ 487 (525)
Q Consensus 408 ~~~~l~~~~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C~~G~rS~~aa~ 487 (525)
.++ +.++ +.++||+|+..||+.||..||++.+...+.+. ++.+...... .++++|+.||.+|.|-.++..
T Consensus 121 n~~-l~D~-~~vviDtRN~YE~~iG~F~gAv~p~~~tFref-------P~~v~~~~~~-~~~KkVvmyCTGGIRCEKas~ 190 (308)
T COG1054 121 NEL-LSDP-DVVVIDTRNDYEVAIGHFEGAVEPDIETFREF-------PAWVEENLDL-LKDKKVVMYCTGGIRCEKASA 190 (308)
T ss_pred HHH-hcCC-CeEEEEcCcceeEeeeeecCccCCChhhhhhh-------HHHHHHHHHh-ccCCcEEEEcCCceeehhhHH
Confidence 999 8875 79999999999999999999999999887654 1223322221 267899999999999999999
Q ss_pred HHHHccCCCCCCCcccEEEecccHHHHHhcccC
Q psy13373 488 LLKRYVERHRPGVVYDIRNIKEGYKGWQKYVDN 520 (525)
Q Consensus 488 ~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~~~p 520 (525)
+|+..||++ ||.|+|||..+.+.+..
T Consensus 191 ~m~~~GF~e-------VyhL~GGIl~Y~e~~~~ 216 (308)
T COG1054 191 WMKENGFKE-------VYHLEGGILKYLEDVGT 216 (308)
T ss_pred HHHHhcchh-------hhcccchHHHHhhhcCc
Confidence 999999998 99999999999877654
No 102
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.32 E-value=5e-12 Score=130.30 Aligned_cols=110 Identities=11% Similarity=0.112 Sum_probs=82.4
Q ss_pred cccChhhhHHHHHhcCCCcEEEecC--------C-hhhhhcCCCCCeEEeChhhHHHHHhhc---CCchHHHHhhhh--h
Q psy13373 400 EHLTALDYRDEFLARRVAHTLLDVR--------S-VDEFAMMSLNIASHATMADVQLMFAEA---GECPAFLESLRE--D 465 (525)
Q Consensus 400 ~~is~~el~~~~l~~~~~~~lIDVR--------~-~~E~~~ghIpGAinip~~~l~~~~~~~---~~~~~~l~~l~~--~ 465 (525)
..|++++|.++ +++ ++.+|||+| + ..+|..||||||+|+|+..+....... ....+.+.++.. +
T Consensus 22 ~lvs~~~L~~~-l~~-~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~G 99 (320)
T PLN02723 22 PVVSVDWLHAN-LRE-PDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSALG 99 (320)
T ss_pred ceecHHHHHHH-hcC-CCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHHcC
Confidence 57899999999 876 468899996 3 378999999999999987765431000 111122333322 3
Q ss_pred cCCCCeEEEEcCcChH-HHHHHHHHHHccCCCCCCCcccEEEecccHHHHHhcc
Q psy13373 466 ILAHRHVFVICRRGND-SQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKYV 518 (525)
Q Consensus 466 ~~~~~~Ivv~C~~G~r-S~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~~ 518 (525)
++++++|||||.+|.. +..++..|+.+||++ |++|.||+.+|..+.
T Consensus 100 i~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~-------V~~LdGG~~~W~~~G 146 (320)
T PLN02723 100 IENKDGVVVYDGKGIFSAARVWWMFRVFGHEK-------VWVLDGGLPKWRASG 146 (320)
T ss_pred CCCCCEEEEEcCCCcchHHHHHHHHHHcCCCc-------eEEcCCCHHHHHHcC
Confidence 5678999999998854 567788999999998 999999999998764
No 103
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.10 E-value=2e-10 Score=124.77 Aligned_cols=72 Identities=17% Similarity=0.255 Sum_probs=64.1
Q ss_pred CCcEEEecCChhhhhcCCCCC----eEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEcCcChHHHHHHHHHHH
Q psy13373 416 VAHTLLDVRSVDEFAMMSLNI----ASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRRGNDSQKVVQLLKR 491 (525)
Q Consensus 416 ~~~~lIDVR~~~E~~~ghIpG----Ainip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C~~G~rS~~aa~~L~~ 491 (525)
++.++||||+++||..+|||| |+|+|+.++... +..+. +++++++||++|.||..++..|++
T Consensus 406 ~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~~----------~~~l~----~~~~iivyC~~G~rS~~aa~~L~~ 471 (482)
T PRK01269 406 PDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLSTQ----------FGDLD----QSKTYLLYCDRGVMSRLQALYLRE 471 (482)
T ss_pred CCCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHHH----------HhhcC----CCCeEEEECCCCHHHHHHHHHHHH
Confidence 368999999999999999999 999999988765 45553 788999999999999999999999
Q ss_pred ccCCCCCCCcccEEEec
Q psy13373 492 YVERHRPGVVYDIRNIK 508 (525)
Q Consensus 492 ~G~~~~~~~~~~v~~l~ 508 (525)
.||++ |++|.
T Consensus 472 ~G~~n-------v~~y~ 481 (482)
T PRK01269 472 QGFSN-------VKVYR 481 (482)
T ss_pred cCCcc-------EEecC
Confidence 99998 87765
No 104
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=99.03 E-value=1.4e-10 Score=97.74 Aligned_cols=66 Identities=15% Similarity=-0.033 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhhHHHHhHhhccccCCCCCCCCcccchhhhhcccccccccccccccCccCCCCCCCCCCCccccccCCC
Q psy13373 15 EKIRQLKEDLTNAETELETILEDRAFKSRPTDGASVRDDTIRRDVSNERDTNGAGQRGAHSTDSQVGDPASPEEIHREPN 94 (525)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (525)
.+|+++++.|++.||.+++.|++++|++|++++++|||+|||.+ ++++|++ ..+| ++.++|+
T Consensus 29 ~tV~dll~~L~~~~~~~~~~lf~~~g~lr~~i~VlvN~~di~~l--~g~~t~L-----------~dgD-----~v~i~P~ 90 (94)
T cd01764 29 VTVGDLLDYVASNLLEERPDLFIEGGSVRPGIIVLINDTDWELL--GEEDYIL-----------EDGD-----HVVFIST 90 (94)
T ss_pred CcHHHHHHHHHHhCchhhhhhEecCCcccCCEEEEECCcccccc--CCcccCC-----------CCcC-----EEEEECC
Confidence 38999999999999999999999999999999999999999999 9999999 9999 9999999
Q ss_pred cccC
Q psy13373 95 NVNQ 98 (525)
Q Consensus 95 ~~~~ 98 (525)
++||
T Consensus 91 v~GG 94 (94)
T cd01764 91 LHGG 94 (94)
T ss_pred CCCC
Confidence 9998
No 105
>KOG3772|consensus
Probab=98.80 E-value=9.3e-09 Score=103.42 Aligned_cols=107 Identities=12% Similarity=0.116 Sum_probs=77.3
Q ss_pred CCCcccChhhhHHHHHhcC-----CCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCe
Q psy13373 397 DPTEHLTALDYRDEFLARR-----VAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRH 471 (525)
Q Consensus 397 ~~~~~is~~el~~~~l~~~-----~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~ 471 (525)
.....||+++|..+ +... ..++|||+|-|.||..|||+||+|++..+....+- ..........+..-
T Consensus 153 ~~~k~Is~etl~~l-l~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~~~f-------~~~~~~~~~~~~~i 224 (325)
T KOG3772|consen 153 QDLKYISPETLKGL-LQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQDFF-------LLKDGVPSGSKRVI 224 (325)
T ss_pred ccccccCHHHHHHH-HHhccccceeeEEEEEeCCcccccCcccccceecccHhhhhhhh-------ccccccccccCcee
Confidence 55689999999999 7642 13669999999999999999999999876554410 01111100014567
Q ss_pred EEEEcC-cChHHHHHHHHHHHc------------cCCCCCCCcccEEEecccHHHHHhcc
Q psy13373 472 VFVICR-RGNDSQKVVQLLKRY------------VERHRPGVVYDIRNIKEGYKGWQKYV 518 (525)
Q Consensus 472 Ivv~C~-~G~rS~~aa~~L~~~------------G~~~~~~~~~~v~~l~GG~~aW~~~~ 518 (525)
+||||. +..|.-.+|..|+.. -|.+ +|+|+||+.+|....
T Consensus 225 ~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE-------~yiL~gGYk~ff~~~ 277 (325)
T KOG3772|consen 225 LIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPE-------LYILDGGYKEFFSNY 277 (325)
T ss_pred EEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccch-------heeecccHHHHHHhc
Confidence 999997 668888999999841 2233 899999999997543
No 106
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=98.78 E-value=8.4e-08 Score=86.67 Aligned_cols=179 Identities=20% Similarity=0.239 Sum_probs=123.5
Q ss_pred hhcCcEEEEcCCcchHHHHHHhH---HcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEE
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLA---ASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHA 226 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La---~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~ 226 (525)
--...|.++|||.||..++.+|. +-|..+|.++|+..|++.|+--- .-...+|.+|++.++ +|..-.+.-+|++
T Consensus 16 ~PrGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihr--r~Ga~~GEyKv~Fi~-rl~~~~f~r~V~a 92 (217)
T COG4015 16 KPRGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHR--RLGAKVGEYKVDFIK-RLGRVHFGRRVEA 92 (217)
T ss_pred CCCceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHH--HhCCCcchhHHHHHH-HhCcCCCCceeec
Confidence 34568999999999999999998 67999999999999999998532 235789999999876 4555667889999
Q ss_pred eeecCCcchHhHhhccCCeEe---ecCCCHHHHHHHHHHhHhcCCcEEEecccCccce----EEEEecC--CCCceeecC
Q psy13373 227 YQTLLDTSNACDIIRRYDVVV---DACDNAPTRYLLNDACLREGRPLVSASALGLEGQ----LCVYNYK--GGPCYRCIY 297 (525)
Q Consensus 227 ~~~~i~~~~~~~~~~~~dvVi---~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~----v~v~~~~--~~~c~~c~~ 297 (525)
+++.++.+|...+ .+ |+|+ ...|+.+....|..+|++.|+..|+. .|.+|+ +.+.... .+|--+-+.
T Consensus 93 ~pE~it~dNlhll-~g-DVvvi~IAGGdT~PvTaaii~ya~~rG~~TisT--~GVFGigeEev~v~~~eeA~gP~~~~ll 168 (217)
T COG4015 93 FPENITKDNLHLL-KG-DVVVICIAGGDTIPVTAAIINYAKERGIKTIST--NGVFGIGEEEVKVCDAEEAKGPAKFLLL 168 (217)
T ss_pred ccccccccchhhh-cC-CEEEEEecCCCcchhHHHHHHHHHHcCceEeec--CceeecchhheEEeehhhcCccHHHHHH
Confidence 9999999886544 44 6665 45677888899999999999988874 444443 4443221 223222222
Q ss_pred CCCCCCCCC-----CC-cCCCCcccchhHHHHHHHHHHHHHHHhC
Q psy13373 298 PVPPPAETV-----GT-CGDNGVLGPVPGVMGTLQAVETIKLLIG 336 (525)
Q Consensus 298 ~~~~~~~~~-----~~-c~~~~~~~~~~~ivg~~~a~e~lk~l~g 336 (525)
.+..+ +.. .. .+..++.+.+--=++--+..|+|++|..
T Consensus 169 deg~~-dHilVgTgk~IRD~ePitPyvLdrva~~mt~e~Lr~L~~ 212 (217)
T COG4015 169 DEGGP-DHILVGTGKFIRDFEPITPYVLDRVAKRMTIECLRILWS 212 (217)
T ss_pred hcCCC-ceEEEecCccccCCCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 11110 100 00 1112344445556788888899998876
No 107
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=98.63 E-value=1.6e-07 Score=94.54 Aligned_cols=115 Identities=13% Similarity=0.031 Sum_probs=85.6
Q ss_pred CCcccChhhhHHHHHhcC----CCcEEEecCCh--hhhhcCCCCCeEEeChhhHHHHHh---hcCCchHHHHhhhh--hc
Q psy13373 398 PTEHLTALDYRDEFLARR----VAHTLLDVRSV--DEFAMMSLNIASHATMADVQLMFA---EAGECPAFLESLRE--DI 466 (525)
Q Consensus 398 ~~~~is~~el~~~~l~~~----~~~~lIDVR~~--~E~~~ghIpGAinip~~~l~~~~~---~~~~~~~~l~~l~~--~~ 466 (525)
...-++++-|.+. |..+ .+..+++++.. ++|..+|||||+++++......-. ......+.+.++.. ++
T Consensus 9 ~~~lVs~~wl~~~-l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI 87 (285)
T COG2897 9 SEFLVSPDWLAEN-LDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGI 87 (285)
T ss_pred cceEEcHHHHHhh-ccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 3456788888888 7642 25667777665 899999999999999988765411 11223344554433 56
Q ss_pred CCCCeEEEEcCcC-hHHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHhcccC
Q psy13373 467 LAHRHVFVICRRG-NDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKYVDN 520 (525)
Q Consensus 467 ~~~~~Ivv~C~~G-~rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~~~p 520 (525)
..+.+||+|-..+ ..|..++-.|+-+|-++ |++|.||+.+|+++..|
T Consensus 88 ~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~-------V~iLdGG~~~W~~~g~p 135 (285)
T COG2897 88 RNDDTVVVYDDGGGFFAARAWWLLRYLGHEN-------VRILDGGLPAWKAAGLP 135 (285)
T ss_pred CCCCEEEEECCCCCeehHHHHHHHHHcCCCc-------eEEecCCHHHHHHcCCC
Confidence 7899999999765 46788999999999988 99999999999987544
No 108
>KOG1529|consensus
Probab=98.29 E-value=1.3e-06 Score=86.32 Aligned_cols=95 Identities=17% Similarity=0.139 Sum_probs=72.3
Q ss_pred CcEEEecCChhhh-----------hcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhh--hcCCCCeEEEEcCcChHHH
Q psy13373 417 AHTLLDVRSVDEF-----------AMMSLNIASHATMADVQLMFAEAGECPAFLESLRE--DILAHRHVFVICRRGNDSQ 483 (525)
Q Consensus 417 ~~~lIDVR~~~E~-----------~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~--~~~~~~~Ivv~C~~G~rS~ 483 (525)
++..+|.|+..+| ..||||||+|+|+.++... .......+.+..+.. ++..++|+++-|..|..+.
T Consensus 172 ~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~-~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa~ 250 (286)
T KOG1529|consen 172 NFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDP-DGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISAS 250 (286)
T ss_pred cceeeeccccccccccCCCCcccCcCccCCCcccCChHHhccc-ccccCCHHHHHHHHHhcCcccCCCEEEeeccchhHH
Confidence 5889999999999 4689999999999988654 111111233433322 3446899999999999999
Q ss_pred HHHHHHHHccCCCCCCCcccEEEecccHHHHHhcccCC
Q psy13373 484 KVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKYVDNR 521 (525)
Q Consensus 484 ~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~~~p~ 521 (525)
..+..|.+.| .+ +..|.|++.+|.. ..|.
T Consensus 251 ~i~~al~r~g-~~-------~~lYdGS~~Ew~~-~~Pe 279 (286)
T KOG1529|consen 251 IIALALERSG-PD-------AKLYDGSWTEWAL-RAPE 279 (286)
T ss_pred HHHHHHHhcC-CC-------cceecccHHHHhh-cCch
Confidence 9999999999 44 8999999999985 4443
No 109
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=98.18 E-value=1.2e-06 Score=72.99 Aligned_cols=64 Identities=14% Similarity=0.036 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhhHHHHhHhhccccCCCCCCCCcccchhhhhcccccccccccccccCccCCCCCCCCCCCccccccCCC
Q psy13373 15 EKIRQLKEDLTNAETELETILEDRAFKSRPTDGASVRDDTIRRDVSNERDTNGAGQRGAHSTDSQVGDPASPEEIHREPN 94 (525)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (525)
.+|+++++.|.+.||++...+++++|++|+++.++||++.++.+ .+ |+. .++| ++.++|+
T Consensus 25 ~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~--~~--~~l-----------~dgd-----ev~i~Pp 84 (88)
T TIGR01687 25 KTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWG--LG--TEL-----------KDGD-----VVAIFPP 84 (88)
T ss_pred CCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCcc--CC--CCC-----------CCCC-----EEEEeCC
Confidence 47899999999999999999999999999999999999988866 33 677 9999 9999999
Q ss_pred cccC
Q psy13373 95 NVNQ 98 (525)
Q Consensus 95 ~~~~ 98 (525)
++||
T Consensus 85 vsGG 88 (88)
T TIGR01687 85 VSGG 88 (88)
T ss_pred CcCC
Confidence 9998
No 110
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=98.09 E-value=1.4e-05 Score=76.52 Aligned_cols=95 Identities=21% Similarity=0.341 Sum_probs=71.9
Q ss_pred CHHHHHHhhcCcEEEEcCCcchHH-HHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCC
Q psy13373 143 GVMGQEKLLNASVLIVGCGGTGSP-CIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRN 221 (525)
Q Consensus 143 G~~~q~kL~~~~VlViG~GglGs~-ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~ 221 (525)
..+.|++|++++|.|+|.|+.|++ ++..|+.+|++.+.
T Consensus 96 ~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~----------------------------------------- 134 (193)
T TIGR03882 96 PAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAP----------------------------------------- 134 (193)
T ss_pred HHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccC-----------------------------------------
Confidence 346799999999999999999999 99999999999665
Q ss_pred cEEEEeeecCCcchHhHhhccCCeEeecCCCHH-HHHHHHHHhHhcCCcEEEecccCccceE-EEEecCCCCceeec
Q psy13373 222 TIVHAYQTLLDTSNACDIIRRYDVVVDACDNAP-TRYLLNDACLREGRPLVSASALGLEGQL-CVYNYKGGPCYRCI 296 (525)
Q Consensus 222 v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~~-~r~~l~~~~~~~~~p~i~~~~~g~~G~v-~v~~~~~~~c~~c~ 296 (525)
.. .+.++|+. .|... .-..+|+.+.+.++||+-+...|..+-+ -++.|+.++|+.|+
T Consensus 135 ----------~~-------a~l~vVl~-~Dyl~p~L~~~n~~~l~~~~~~l~v~~~~~~~~~gp~~~p~~~~c~~c~ 193 (193)
T TIGR03882 135 ----------SE-------ADLTVVLT-DDYLDPELAAINQRALAAGRPWLLVKPGGVQPWIGPLFKPGKTGCWHCL 193 (193)
T ss_pred ----------CC-------CCEEEEEe-CCCCChHHHHHHHHHHHcCCceEEEEeCCceEEECCeecCCCCcccccC
Confidence 00 01233433 33323 3345899999999999998877766666 34779999999995
No 111
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.90 E-value=3.7e-05 Score=78.14 Aligned_cols=77 Identities=22% Similarity=0.226 Sum_probs=61.0
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeee
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQT 229 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~ 229 (525)
++.++|+|+|+||.|..++..|+..|+++|+|+|.+. .|++.+++.+.+.++.+.+...
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~-------------------~ka~~la~~l~~~~~~~~~~~~-- 183 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP-------------------ARAAALADELNARFPAARATAG-- 183 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH-------------------HHHHHHHHHHHhhCCCeEEEec--
Confidence 5678999999999999999999999999999997652 6888898888877766544322
Q ss_pred cCCcchHhHhhccCCeEeecCC
Q psy13373 230 LLDTSNACDIIRRYDVVVDACD 251 (525)
Q Consensus 230 ~i~~~~~~~~~~~~dvVi~~~d 251 (525)
++..+.+.++|+||+||.
T Consensus 184 ----~~~~~~~~~aDiVInaTp 201 (284)
T PRK12549 184 ----SDLAAALAAADGLVHATP 201 (284)
T ss_pred ----cchHhhhCCCCEEEECCc
Confidence 122345678999999864
No 112
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.86 E-value=3.8e-05 Score=69.17 Aligned_cols=78 Identities=19% Similarity=0.331 Sum_probs=57.6
Q ss_pred HhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEee
Q psy13373 149 KLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQ 228 (525)
Q Consensus 149 kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 228 (525)
.+++++|+|+|+||.|..++++|...|+++|+|++ |.. .|++.+++.+ +...+....
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~n----------Rt~---------~ra~~l~~~~----~~~~~~~~~ 65 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVN----------RTP---------ERAEALAEEF----GGVNIEAIP 65 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEE----------SSH---------HHHHHHHHHH----TGCSEEEEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEE----------CCH---------HHHHHHHHHc----Cccccceee
Confidence 58999999999999999999999999999999975 321 3566666555 344444433
Q ss_pred ecCCcchHhHhhccCCeEeecCCCH
Q psy13373 229 TLLDTSNACDIIRRYDVVVDACDNA 253 (525)
Q Consensus 229 ~~i~~~~~~~~~~~~dvVi~~~d~~ 253 (525)
. +...+.+.++|+||.|+...
T Consensus 66 ~----~~~~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 66 L----EDLEEALQEADIVINATPSG 86 (135)
T ss_dssp G----GGHCHHHHTESEEEE-SSTT
T ss_pred H----HHHHHHHhhCCeEEEecCCC
Confidence 2 12346788999999998765
No 113
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.81 E-value=0.00013 Score=76.65 Aligned_cols=99 Identities=25% Similarity=0.395 Sum_probs=73.1
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhh-CCCcEEEEeeecC
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAI-NRNTIVHAYQTLL 231 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~l-np~v~v~~~~~~i 231 (525)
.+|+|+|+|++|+.+|.+|++.|.++|++.|... ..++++... -+ ++++....+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~-----------------------~~~~~i~~~~~~--~v~~~~vD~ 56 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK-----------------------EKCARIAELIGG--KVEALQVDA 56 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH-----------------------HHHHHHHhhccc--cceeEEecc
Confidence 5899999999999999999999999999976532 112222222 22 555555555
Q ss_pred Ccc-hHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccC
Q psy13373 232 DTS-NACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALG 277 (525)
Q Consensus 232 ~~~-~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g 277 (525)
.+. ...++++++|+||+|...+... .+.+.|.+.|+++++.+...
T Consensus 57 ~d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts~~~ 102 (389)
T COG1748 57 ADVDALVALIKDFDLVINAAPPFVDL-TILKACIKTGVDYVDTSYYE 102 (389)
T ss_pred cChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEcccCC
Confidence 443 4568899999999988765444 78889999999999986543
No 114
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.63 E-value=0.00053 Score=66.16 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=64.3
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeee
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQT 229 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~ 229 (525)
|++++|+|||.|.+|...++.|...| .+|++++++. . ..+.+.. +.-.+.....
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~------~---------------~~l~~l~----~~~~i~~~~~ 61 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPEL------T---------------ENLVKLV----EEGKIRWKQK 61 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC------C---------------HHHHHHH----hCCCEEEEec
Confidence 78999999999999999999999999 6899986531 1 1111111 1112333222
Q ss_pred cCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEE
Q psy13373 230 LLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVS 272 (525)
Q Consensus 230 ~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~ 272 (525)
.+. ...+.++|+||.||++.+....|.+.| +.++++-.
T Consensus 62 ~~~----~~~l~~adlViaaT~d~elN~~i~~~a-~~~~lvn~ 99 (202)
T PRK06718 62 EFE----PSDIVDAFLVIAATNDPRVNEQVKEDL-PENALFNV 99 (202)
T ss_pred CCC----hhhcCCceEEEEcCCCHHHHHHHHHHH-HhCCcEEE
Confidence 222 345788999999999999998999999 45665433
No 115
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.45 E-value=0.0014 Score=63.42 Aligned_cols=96 Identities=19% Similarity=0.222 Sum_probs=71.0
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeee
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQT 229 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~ 229 (525)
|++++|+|||.|.+|..-++.|...|. ++++++++.- ..+.+ +.+ .-++..+..
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~---------------------~~l~~-l~~---~~~i~~~~~ 60 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE---------------------SELTL-LAE---QGGITWLAR 60 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC---------------------HHHHH-HHH---cCCEEEEeC
Confidence 788999999999999999999999996 7999987531 11111 111 124555444
Q ss_pred cCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecc
Q psy13373 230 LLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASA 275 (525)
Q Consensus 230 ~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~ 275 (525)
... .+.+.++++||.|+++.+....+...|++.++++-.++-
T Consensus 61 ~~~----~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~ 102 (205)
T TIGR01470 61 CFD----ADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVVDD 102 (205)
T ss_pred CCC----HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECCC
Confidence 443 245788999999999988888899999999998755543
No 116
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=97.37 E-value=0.0005 Score=68.76 Aligned_cols=106 Identities=15% Similarity=0.245 Sum_probs=73.4
Q ss_pred CCCcccChhhhHHHHHhcC-----CCcEEEecCChhhhhcCCCCCeEEeChhh-HHHHHhhcCCchHHHHhhhhhcCCCC
Q psy13373 397 DPTEHLTALDYRDEFLARR-----VAHTLLDVRSVDEFAMMSLNIASHATMAD-VQLMFAEAGECPAFLESLREDILAHR 470 (525)
Q Consensus 397 ~~~~~is~~el~~~~l~~~-----~~~~lIDVR~~~E~~~ghIpGAinip~~~-l~~~~~~~~~~~~~l~~l~~~~~~~~ 470 (525)
...++|+++.+... |+.. .+.+|||+|=+.||..|||-.|+||.-.+ +...| +.+. +...+
T Consensus 239 Ds~~RIs~etlk~v-l~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~~l~~~F---------~hkp---lThp~ 305 (427)
T COG5105 239 DSIQRISVETLKQV-LEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTKKLGLLF---------RHKP---LTHPR 305 (427)
T ss_pred cchhhcCHHHHHHH-HhchhhhhhhceeEEeecceeeecCceeeeeeecchHHHHHHHH---------Hhcc---ccCce
Confidence 44578999999998 7642 13569999999999999999999997654 33221 2221 12355
Q ss_pred eEEEEcC-cChHHHHHHHHHHHccCCCCC--CC---cccEEEecccHHHHH
Q psy13373 471 HVFVICR-RGNDSQKVVQLLKRYVERHRP--GV---VYDIRNIKEGYKGWQ 515 (525)
Q Consensus 471 ~Ivv~C~-~G~rS~~aa~~L~~~G~~~~~--~~---~~~v~~l~GG~~aW~ 515 (525)
-+|+.|. +.+|+-..|..|+..--..++ ++ --.||.|+||+.++-
T Consensus 306 aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy 356 (427)
T COG5105 306 ALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFY 356 (427)
T ss_pred eEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHh
Confidence 6899997 568998899998765321100 00 012999999998764
No 117
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.35 E-value=0.0003 Score=60.30 Aligned_cols=89 Identities=16% Similarity=0.176 Sum_probs=64.1
Q ss_pred HhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEee
Q psy13373 149 KLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQ 228 (525)
Q Consensus 149 kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 228 (525)
.|++.+|+|||.|.+|..-++.|..+| .+++++.++. +. +. ..++. ..
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~~---------------------~~-------~~i~~--~~ 51 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-EF---------------------SE-------GLIQL--IR 51 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-HH---------------------HH-------TSCEE--EE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-hh---------------------hh-------hHHHH--Hh
Confidence 478999999999999999999999999 6899987765 00 00 12222 22
Q ss_pred ecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEec
Q psy13373 229 TLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSAS 274 (525)
Q Consensus 229 ~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~ 274 (525)
..+ .+.+.++++|+.|+++......+.+.|++.++|+-.+.
T Consensus 52 ~~~-----~~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 52 REF-----EEDLDGADLVFAATDDPELNEAIYADARARGILVNVVD 92 (103)
T ss_dssp SS------GGGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEETT
T ss_pred hhH-----HHHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEECC
Confidence 222 23478899999999999999999999999999876654
No 118
>KOG1529|consensus
Probab=97.26 E-value=0.00073 Score=67.19 Aligned_cols=110 Identities=14% Similarity=0.167 Sum_probs=75.5
Q ss_pred cChhhhHHHHHhcCCCcEEEecC---------ChhhhhcCCCCCeEEeChhhHHHHHhhc---CCchHHHHhhhh--hcC
Q psy13373 402 LTALDYRDEFLARRVAHTLLDVR---------SVDEFAMMSLNIASHATMADVQLMFAEA---GECPAFLESLRE--DIL 467 (525)
Q Consensus 402 is~~el~~~~l~~~~~~~lIDVR---------~~~E~~~ghIpGAinip~~~l~~~~~~~---~~~~~~l~~l~~--~~~ 467 (525)
+++.-+.+. +.+ +...|||.- ...||..-|||||.++.++.+.+.-... ....+..++... +++
T Consensus 7 v~~~~v~~~-~~~-~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~ 84 (286)
T KOG1529|consen 7 VSVKWVMEN-LGN-HGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLGVD 84 (286)
T ss_pred cChHHHHHh-CcC-CCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcCCC
Confidence 455556666 655 467888862 2346788899999999998775440000 001111122211 456
Q ss_pred CCCeEEEEcC--cCh-HHHHHHHHHHHccCCCCCCCcccEEEecccHHHHHhcccC
Q psy13373 468 AHRHVFVICR--RGN-DSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKYVDN 520 (525)
Q Consensus 468 ~~~~Ivv~C~--~G~-rS~~aa~~L~~~G~~~~~~~~~~v~~l~GG~~aW~~~~~p 520 (525)
.+..+|||-+ .|+ .|..++-.++-+|+.+ |+.|.||+..|+....|
T Consensus 85 n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~-------VslL~GG~~~Wk~~g~~ 133 (286)
T KOG1529|consen 85 NGDHVVIYDRGDGGMFSASRVWWTFRVFGHTK-------VSLLNGGFRAWKAAGGP 133 (286)
T ss_pred CCCeEEEEcCCCcceeehhhHHHHHHHhCccE-------EEEecCcHHHHHHcCCc
Confidence 8889999999 675 5777888999999988 99999999999987554
No 119
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.22 E-value=0.0011 Score=67.36 Aligned_cols=79 Identities=29% Similarity=0.342 Sum_probs=55.8
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeee
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQT 229 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~ 229 (525)
+++++|+|+|+||.|..++..|+..|+.+|+|+|.+. .|++.+++.+....+...+...
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~-------------------~ka~~La~~~~~~~~~~~~~~~-- 183 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT-------------------SRAQALADVINNAVGREAVVGV-- 183 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH-------------------HHHHHHHHHHhhccCcceEEec--
Confidence 4568999999999999999999999999999986542 3777777776544433222221
Q ss_pred cCCcchHhHhhccCCeEeecCC
Q psy13373 230 LLDTSNACDIIRRYDVVVDACD 251 (525)
Q Consensus 230 ~i~~~~~~~~~~~~dvVi~~~d 251 (525)
......+.+..+|+||+|+-
T Consensus 184 --~~~~~~~~~~~~divINaTp 203 (283)
T PRK14027 184 --DARGIEDVIAAADGVVNATP 203 (283)
T ss_pred --CHhHHHHHHhhcCEEEEcCC
Confidence 11111234567999999874
No 120
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.18 E-value=0.0013 Score=69.62 Aligned_cols=95 Identities=23% Similarity=0.341 Sum_probs=65.1
Q ss_pred EEEEcCCcchHHHHHHhHHcCCc-eEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecCCc
Q psy13373 155 VLIVGCGGTGSPCIQYLAASGVG-TLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDT 233 (525)
Q Consensus 155 VlViG~GglGs~ia~~La~~GVg-~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~ 233 (525)
|+|+|+|.+|+.+++.|++.+-- ++++.|.+. .|++.+++.+ ...++......+.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~-------------------~~~~~~~~~~----~~~~~~~~~~d~~~ 57 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP-------------------EKAERLAEKL----LGDRVEAVQVDVND 57 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH-------------------HHHHHHHT------TTTTEEEEE--TTT
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH-------------------HHHHHHHhhc----cccceeEEEEecCC
Confidence 79999999999999999999754 999987644 2333333322 23355555555554
Q ss_pred c-hHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEe
Q psy13373 234 S-NACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSA 273 (525)
Q Consensus 234 ~-~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~ 273 (525)
. ...++++++|+||+|...+ ....+.+.|.+.|+++|+.
T Consensus 58 ~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 58 PESLAELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp HHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEES
T ss_pred HHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeecc
Confidence 3 3677899999999998776 5667899999999999994
No 121
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.14 E-value=0.004 Score=57.59 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=61.3
Q ss_pred HhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEee
Q psy13373 149 KLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQ 228 (525)
Q Consensus 149 kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 228 (525)
.|++.+|+|||.|.+|...++.|...|. ++++|+++..+ .+.++ +. +....
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~~-------------------------~l~~l-~~--i~~~~ 60 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEICK-------------------------EMKEL-PY--ITWKQ 60 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccCH-------------------------HHHhc-cC--cEEEe
Confidence 4789999999999999999999999997 68888765311 01111 11 22222
Q ss_pred ecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhc
Q psy13373 229 TLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLRE 266 (525)
Q Consensus 229 ~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~ 266 (525)
..+. .+.+.++|+||.+|++.+....+...|++.
T Consensus 61 ~~~~----~~dl~~a~lViaaT~d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 61 KTFS----NDDIKDAHLIYAATNQHAVNMMVKQAAHDF 94 (157)
T ss_pred cccC----hhcCCCceEEEECCCCHHHHHHHHHHHHHC
Confidence 2232 234688999999999999998898888774
No 122
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.05 E-value=0.0023 Score=65.24 Aligned_cols=84 Identities=17% Similarity=0.227 Sum_probs=57.7
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeee
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQT 229 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~ 229 (525)
+++++|+|+|+||+|..++..|+..|+++|+|++.+. + ...|++.+++.+.+..+.+.+...+
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~--------------~--~~~~a~~l~~~l~~~~~~~~~~~~d- 186 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD--------------D--FYERAEQTAEKIKQEVPECIVNVYD- 186 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc--------------h--HHHHHHHHHHHHhhcCCCceeEEec-
Confidence 5678999999999999999999999999999986521 0 0135666666666555544443332
Q ss_pred cCCc-chHhHhhccCCeEeecCC
Q psy13373 230 LLDT-SNACDIIRRYDVVVDACD 251 (525)
Q Consensus 230 ~i~~-~~~~~~~~~~dvVi~~~d 251 (525)
+.+ +...+.+..+|+||+||-
T Consensus 187 -~~~~~~~~~~~~~~DilINaTp 208 (289)
T PRK12548 187 -LNDTEKLKAEIASSDILVNATL 208 (289)
T ss_pred -hhhhhHHHhhhccCCEEEEeCC
Confidence 222 123445677899998864
No 123
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.94 E-value=0.0083 Score=58.63 Aligned_cols=97 Identities=14% Similarity=0.120 Sum_probs=70.1
Q ss_pred HhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEee
Q psy13373 149 KLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQ 228 (525)
Q Consensus 149 kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 228 (525)
++++.+|+|||.|.++..=+..|..+|. +|++|-++.- +.+.++...-.++.+.
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~-------------------------~el~~l~~~~~i~~~~ 75 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFS-------------------------KEFLDLKKYGNLKLIK 75 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCC-------------------------HHHHHHHhCCCEEEEe
Confidence 3678899999999999999999999994 5999866531 0111111112344444
Q ss_pred ecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecc
Q psy13373 229 TLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASA 275 (525)
Q Consensus 229 ~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~ 275 (525)
..+. .+.+.++++||.|||+......|...|+..++++..+.-
T Consensus 76 r~~~----~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 76 GNYD----KEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred CCCC----hHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCC
Confidence 4443 244688999999999999999999999999988776543
No 124
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.93 E-value=0.0021 Score=65.25 Aligned_cols=78 Identities=19% Similarity=0.314 Sum_probs=54.1
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeee
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQT 229 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~ 229 (525)
+++++|+|+|+||.|..++..|+..|+++|+|++.+ ..|++.+++.+.... .+....
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt-------------------~~ka~~La~~~~~~~---~~~~~~- 179 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN-------------------PDKLSRLVDLGVQVG---VITRLE- 179 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhhhcC---cceecc-
Confidence 567899999999999999999999999999998542 146766666654321 111111
Q ss_pred cCCcchHhHhhccCCeEeecCCC
Q psy13373 230 LLDTSNACDIIRRYDVVVDACDN 252 (525)
Q Consensus 230 ~i~~~~~~~~~~~~dvVi~~~d~ 252 (525)
..++....+.++|+||+|+--
T Consensus 180 --~~~~~~~~~~~~DiVInaTp~ 200 (282)
T TIGR01809 180 --GDSGGLAIEKAAEVLVSTVPA 200 (282)
T ss_pred --chhhhhhcccCCCEEEECCCC
Confidence 001123445789999998764
No 125
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.72 E-value=0.0053 Score=62.50 Aligned_cols=83 Identities=12% Similarity=0.187 Sum_probs=55.6
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeee
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQT 229 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~ 229 (525)
+++++|+|+|+||.+..|+..|+..|+++|+|++.+. + ...|++.+++.+....+ ..+....
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~--------------~--~~~ka~~la~~~~~~~~-~~~~~~~- 183 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD--------------E--FFDKALAFAQRVNENTD-CVVTVTD- 183 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc--------------c--HHHHHHHHHHHhhhccC-ceEEEec-
Confidence 5678999999999999999999999999999986421 0 13577777777654322 2222221
Q ss_pred cCCc-chHhHhhccCCeEeecCC
Q psy13373 230 LLDT-SNACDIIRRYDVVVDACD 251 (525)
Q Consensus 230 ~i~~-~~~~~~~~~~dvVi~~~d 251 (525)
+.. ....+.+.++|+||+||-
T Consensus 184 -~~~~~~l~~~~~~aDivINaTp 205 (288)
T PRK12749 184 -LADQQAFAEALASADILTNGTK 205 (288)
T ss_pred -hhhhhhhhhhcccCCEEEECCC
Confidence 111 112234567999999864
No 126
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.70 E-value=0.0044 Score=62.78 Aligned_cols=175 Identities=16% Similarity=0.162 Sum_probs=94.2
Q ss_pred HHHhHhhccccCCCCCCCCcccchhhhhcccccccccccccccCccCCCCCCC---CCCCccccccCCCcccCCCCCCCC
Q psy13373 29 TELETILEDRAFKSRPTDGASVRDDTIRRDVSNERDTNGAGQRGAHSTDSQVG---DPASPEEIHREPNNVNQTTESDNP 105 (525)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 105 (525)
|.+-..++..-|--.....+.+..++....+++-.+-...|.+.-.+++..+- |..+++.. .+|.+|-
T Consensus 22 P~~Hn~~~~~lGl~~~Y~a~~v~~~~l~~~v~~~~~~g~~G~NVTiP~Ke~~~~~lD~l~~~A~-----~iGAVNT---- 92 (283)
T COG0169 22 PRMHNAAFRALGLDYVYLAFEVPPEDLPEAVSGIRALGFRGLNVTIPFKEAALPLLDELSPRAR-----LIGAVNT---- 92 (283)
T ss_pred HHHHHHHHHHcCCCceEEEeecCHHHHHHHHHHHHhcCCCeeEECCccHHHHHHHHhcCCHHHH-----HhCCceE----
Confidence 55556666666666667777777777777664433344445444444443332 63333332 3333331
Q ss_pred CCCccccccccccccccCCCCHHHHhhhhhcccccccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 106 NGPVKVEDDCVWYGEVYSKFSKDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~~~rysRq~~l~~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
+..+++..|... -|+-. =+-+-+.- .+. ...+++++|+|+|+||.+..++..|+..|+.+|+|++..
T Consensus 93 ---l~~~~~g~l~G~----NTD~~--G~~~~L~~--~~~--~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt 159 (283)
T COG0169 93 ---LVREDDGKLRGY----NTDGI--GFLRALKE--FGL--PVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRT 159 (283)
T ss_pred ---EEEccCCEEEEE----cCCHH--HHHHHHHh--cCC--CcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 111111222110 01100 01111100 000 012356899999999999999999999999999997432
Q ss_pred cccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEeecCC
Q psy13373 186 RVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACD 251 (525)
Q Consensus 186 ~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d 251 (525)
. .|++.+++.+.+..+.+....... .+....+|+||+||.
T Consensus 160 ~-------------------~ra~~La~~~~~~~~~~~~~~~~~-------~~~~~~~dliINaTp 199 (283)
T COG0169 160 R-------------------ERAEELADLFGELGAAVEAAALAD-------LEGLEEADLLINATP 199 (283)
T ss_pred H-------------------HHHHHHHHHhhhcccccccccccc-------cccccccCEEEECCC
Confidence 2 577888888887765222221111 111116899999865
No 127
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.66 E-value=0.0039 Score=63.15 Aligned_cols=75 Identities=19% Similarity=0.403 Sum_probs=53.0
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeee
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQT 229 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~ 229 (525)
+++++|+|+|+||+|..+++.|...|+.+|++++.+. .|++.+++.+....+ +.+ .
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~-------------------~~a~~l~~~~~~~~~-~~~---~- 176 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTV-------------------ERAEELAKLFGALGK-AEL---D- 176 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH-------------------HHHHHHHHHhhhccc-eee---c-
Confidence 6778999999999999999999999999999986531 355556555543221 111 1
Q ss_pred cCCcchHhHhhccCCeEeecCCC
Q psy13373 230 LLDTSNACDIIRRYDVVVDACDN 252 (525)
Q Consensus 230 ~i~~~~~~~~~~~~dvVi~~~d~ 252 (525)
. ...+.+.++|+||+|+-.
T Consensus 177 -~---~~~~~~~~~DivInaTp~ 195 (278)
T PRK00258 177 -L---ELQEELADFDLIINATSA 195 (278)
T ss_pred -c---cchhccccCCEEEECCcC
Confidence 1 123456789999998753
No 128
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.63 E-value=0.0033 Score=66.56 Aligned_cols=76 Identities=20% Similarity=0.354 Sum_probs=58.8
Q ss_pred HhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEee
Q psy13373 149 KLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQ 228 (525)
Q Consensus 149 kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 228 (525)
.|++++|+|||+|-+|.-+|++|...|+.+|++. ||+. -||+.+++++. ..+
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~Ia----------NRT~---------erA~~La~~~~-----~~~---- 226 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIA----------NRTL---------ERAEELAKKLG-----AEA---- 226 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEE----------cCCH---------HHHHHHHHHhC-----Cee----
Confidence 3788999999999999999999999999999995 6654 35666666655 222
Q ss_pred ecCCcchHhHhhccCCeEeecCCCHH
Q psy13373 229 TLLDTSNACDIIRRYDVVVDACDNAP 254 (525)
Q Consensus 229 ~~i~~~~~~~~~~~~dvVi~~~d~~~ 254 (525)
+.-++..+.+.++|+||.||..+.
T Consensus 227 --~~l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 227 --VALEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred --ecHHHHHHhhhhCCEEEEecCCCc
Confidence 222335678899999999988754
No 129
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=96.57 E-value=0.0011 Score=53.81 Aligned_cols=55 Identities=20% Similarity=0.158 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhhHHHHhHhhccccCCCCCCCCcccchhhhhcccccccccccccccCccCCCCCCCCCCCccccccCCC
Q psy13373 15 EKIRQLKEDLTNAETELETILEDRAFKSRPTDGASVRDDTIRRDVSNERDTNGAGQRGAHSTDSQVGDPASPEEIHREPN 94 (525)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (525)
.+|+++++.|.+.||++ .++.++.+.++||++.++ ++++. ..+| ++.++|+
T Consensus 26 ~tv~~ll~~l~~~~~~~-------~~~~~~~~~v~vNg~~v~------~~~~l-----------~~gD-----~v~i~pp 76 (80)
T cd00754 26 ATVGELLDALEARYPGL-------LEELLARVRIAVNGEYVR------LDTPL-----------KDGD-----EVAIIPP 76 (80)
T ss_pred CcHHHHHHHHHHHCchH-------HHhhhhcEEEEECCeEcC------CCccc-----------CCCC-----EEEEeCC
Confidence 37899999999999987 568889999999997776 45778 8999 9999999
Q ss_pred cccC
Q psy13373 95 NVNQ 98 (525)
Q Consensus 95 ~~~~ 98 (525)
++||
T Consensus 77 v~GG 80 (80)
T cd00754 77 VSGG 80 (80)
T ss_pred CCCC
Confidence 9998
No 130
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.54 E-value=0.0043 Score=66.38 Aligned_cols=77 Identities=23% Similarity=0.331 Sum_probs=54.9
Q ss_pred HhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEee
Q psy13373 149 KLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQ 228 (525)
Q Consensus 149 kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 228 (525)
.+.+++|+|||+|+.|..++++|+..|+.+|+++. |. ..|++.+++.+. ...+.
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~n----------Rt---------~~ra~~La~~~~----~~~~~--- 231 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLAN----------RT---------IEKAQKITSAFR----NASAH--- 231 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEC----------CC---------HHHHHHHHHHhc----CCeEe---
Confidence 36789999999999999999999999999999963 32 124555544432 12111
Q ss_pred ecCCcchHhHhhccCCeEeecCCCHH
Q psy13373 229 TLLDTSNACDIIRRYDVVVDACDNAP 254 (525)
Q Consensus 229 ~~i~~~~~~~~~~~~dvVi~~~d~~~ 254 (525)
..++..+.+.++|+||+||..+.
T Consensus 232 ---~~~~l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 232 ---YLSELPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred ---cHHHHHHHhccCCEEEECcCCCC
Confidence 11234577899999999987753
No 131
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.46 E-value=0.0058 Score=55.68 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=31.7
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
+++++|+|+|+|++|..+++.|...|..+++++|.+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~ 52 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 567899999999999999999999987788888653
No 132
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.42 E-value=0.0069 Score=56.71 Aligned_cols=58 Identities=21% Similarity=0.311 Sum_probs=47.2
Q ss_pred HhhcCcEEEEcCCcc-hHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEe
Q psy13373 149 KLLNASVLIVGCGGT-GSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAY 227 (525)
Q Consensus 149 kL~~~~VlViG~Ggl-Gs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~ 227 (525)
.|.+++|+|||.|.. |..++++|...|+ ++++++...
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~----------------------------------------- 78 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKT----------------------------------------- 78 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCc-----------------------------------------
Confidence 378999999999985 8889999999999 688876420
Q ss_pred eecCCcchHhHhhccCCeEeecCCCHH
Q psy13373 228 QTLLDTSNACDIIRRYDVVVDACDNAP 254 (525)
Q Consensus 228 ~~~i~~~~~~~~~~~~dvVi~~~d~~~ 254 (525)
++..+.+.++|+||.|+....
T Consensus 79 ------~~l~~~l~~aDiVIsat~~~~ 99 (168)
T cd01080 79 ------KNLKEHTKQADIVIVAVGKPG 99 (168)
T ss_pred ------hhHHHHHhhCCEEEEcCCCCc
Confidence 234567899999999988754
No 133
>COG2603 Predicted ATPase [General function prediction only]
Probab=96.41 E-value=0.0038 Score=62.13 Aligned_cols=92 Identities=18% Similarity=0.181 Sum_probs=59.2
Q ss_pred CcEEEecCChhhhhcCCCCCeEEeChhhHHHH------Hhh-cCC-------------chHHHHhhhhhcCCCCeEEEEc
Q psy13373 417 AHTLLDVRSVDEFAMMSLNIASHATMADVQLM------FAE-AGE-------------CPAFLESLREDILAHRHVFVIC 476 (525)
Q Consensus 417 ~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~------~~~-~~~-------------~~~~l~~l~~~~~~~~~Ivv~C 476 (525)
+..|||||.|-||..|+.|+++|+|.-.-... +.. ... ..+..-++....-.+.|+-++|
T Consensus 15 ~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f~e~~~~Gi~c 94 (334)
T COG2603 15 DTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAFQEENPVGILC 94 (334)
T ss_pred CCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCcceee
Confidence 56799999999999999999999997322111 111 000 0000000000112456777778
Q ss_pred Cc-ChHHHHHHHHH-HHccCCCCCCCcccEEEecccHHHHHh
Q psy13373 477 RR-GNDSQKVVQLL-KRYVERHRPGVVYDIRNIKEGYKGWQK 516 (525)
Q Consensus 477 ~~-G~rS~~aa~~L-~~~G~~~~~~~~~~v~~l~GG~~aW~~ 516 (525)
.. |.||...+.+| ...|++ ..-+.||+.+.+.
T Consensus 95 ~rgg~rsk~v~~~l~~~~g~~--------~~r~iGGeKalrt 128 (334)
T COG2603 95 ARGGLRSKIVQKWLGYAAGID--------YPRVIGGEKALRT 128 (334)
T ss_pred ccccchhHHHHHHHHHHHHhh--------hhhhhchHHHHHH
Confidence 75 68999999999 777876 4456799988764
No 134
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.34 E-value=0.03 Score=54.96 Aligned_cols=97 Identities=25% Similarity=0.316 Sum_probs=66.0
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecCC
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLD 232 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~ 232 (525)
++++|+|+|-+|..+|+.|+..|-. +++||.|. +.+.+.+.+ .....++....+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~-Vv~Id~d~----------------------~~~~~~~~~---~~~~~~v~gd~t 54 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHN-VVLIDRDE----------------------ERVEEFLAD---ELDTHVVIGDAT 54 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCc-eEEEEcCH----------------------HHHHHHhhh---hcceEEEEecCC
Confidence 4799999999999999999999865 66666654 122222221 223344444444
Q ss_pred cchH-hHh-hccCCeEeecCCCHHHHHHHHHHhHh-cCCcEEEecc
Q psy13373 233 TSNA-CDI-IRRYDVVVDACDNAPTRYLLNDACLR-EGRPLVSASA 275 (525)
Q Consensus 233 ~~~~-~~~-~~~~dvVi~~~d~~~~r~~l~~~~~~-~~~p~i~~~~ 275 (525)
+... .+. +.++|++|.++++-.....+...+.+ +|+|-+.+-+
T Consensus 55 ~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~ 100 (225)
T COG0569 55 DEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARA 100 (225)
T ss_pred CHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEe
Confidence 4332 222 67999999999987777777776655 8999888744
No 135
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.33 E-value=0.013 Score=60.32 Aligned_cols=83 Identities=20% Similarity=0.314 Sum_probs=57.5
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeee
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQT 229 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~ 229 (525)
+.+.+|+|+|+|.+|..++++|...|+.+|+++|.+. .|+..+++.+ . . .+. .
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~-------------------~ra~~la~~~---g-~-~~~--~- 228 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY-------------------ERAEELAKEL---G-G-NAV--P- 228 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH-------------------HHHHHHHHHc---C-C-eEE--e-
Confidence 5789999999999999999999999999999986542 2343333332 1 1 111 1
Q ss_pred cCCcchHhHhhccCCeEeecCCCHHHHHHHHHH
Q psy13373 230 LLDTSNACDIIRRYDVVVDACDNAPTRYLLNDA 262 (525)
Q Consensus 230 ~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~ 262 (525)
.++..+.+.++|+||.|+........+...
T Consensus 229 ---~~~~~~~l~~aDvVi~at~~~~~~~~~~~~ 258 (311)
T cd05213 229 ---LDELLELLNEADVVISATGAPHYAKIVERA 258 (311)
T ss_pred ---HHHHHHHHhcCCEEEECCCCCchHHHHHHH
Confidence 123456678899999999887663334433
No 136
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=96.29 E-value=0.0014 Score=52.55 Aligned_cols=55 Identities=25% Similarity=0.285 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhHHHHhHhhccccCCCCCCCCcccchhhhhcccccccccccccccCccCCCCCCCCCCCccccccCCCc
Q psy13373 16 KIRQLKEDLTNAETELETILEDRAFKSRPTDGASVRDDTIRRDVSNERDTNGAGQRGAHSTDSQVGDPASPEEIHREPNN 95 (525)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (525)
+|+++++.|.+.||.+. .++.+.+.||++.++. +..+++. ..+| ++.++|++
T Consensus 23 tv~~ll~~l~~~~p~~~---------~~~~~~v~vN~~~v~~---~~~~~~l-----------~~gD-----~V~i~ppv 74 (77)
T PF02597_consen 23 TVRDLLEALAERYPELA---------LRDRVAVAVNGEIVPD---DGLDTPL-----------KDGD-----EVAILPPV 74 (77)
T ss_dssp BHHHHHHHHCHHTGGGH---------TTTTEEEEETTEEEGG---GTTTSBE-----------ETTE-----EEEEEEST
T ss_pred cHHHHHHHHHhhccccc---------cCccEEEEECCEEcCC---ccCCcCc-----------CCCC-----EEEEECCC
Confidence 68899999999999998 7788999999988875 4677888 8999 99999999
Q ss_pred ccC
Q psy13373 96 VNQ 98 (525)
Q Consensus 96 ~~~ 98 (525)
+||
T Consensus 75 sGG 77 (77)
T PF02597_consen 75 SGG 77 (77)
T ss_dssp STS
T ss_pred CCC
Confidence 998
No 137
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.29 E-value=0.015 Score=62.80 Aligned_cols=95 Identities=17% Similarity=0.173 Sum_probs=60.6
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeee
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQT 229 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~ 229 (525)
|++++|+|+|.|++|.++|+.|+..|. +++++|.+.- ...+...+.|.+.+ ++ .+..
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~------------------~~~~~~~~~l~~~~--~~--~~~~ 59 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEE------------------DQLKEALEELGELG--IE--LVLG 59 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch------------------HHHHHHHHHHHhcC--CE--EEeC
Confidence 678999999999999999999999997 6999877541 01111223333322 22 3222
Q ss_pred cCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEE
Q psy13373 230 LLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVS 272 (525)
Q Consensus 230 ~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~ 272 (525)
... .+...++|+||.++....... +...|++.|+|++.
T Consensus 60 ~~~----~~~~~~~d~vv~~~g~~~~~~-~~~~a~~~~i~~~~ 97 (450)
T PRK14106 60 EYP----EEFLEGVDLVVVSPGVPLDSP-PVVQAHKKGIEVIG 97 (450)
T ss_pred Ccc----hhHhhcCCEEEECCCCCCCCH-HHHHHHHCCCcEEe
Confidence 222 245678999998776543332 44556777777665
No 138
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.22 E-value=0.014 Score=62.70 Aligned_cols=75 Identities=17% Similarity=0.286 Sum_probs=52.7
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeee
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQT 229 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~ 229 (525)
+.+.+|+|+|+|.+|..++++|...|+.+++++|.+. .|+..+++.+ . . . .+
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~-------------------~ra~~la~~~---g-~-~--~i-- 229 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTY-------------------ERAEDLAKEL---G-G-E--AV-- 229 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCH-------------------HHHHHHHHHc---C-C-e--Ee--
Confidence 6789999999999999999999999999999986532 2333233222 1 1 1 11
Q ss_pred cCCcchHhHhhccCCeEeecCCCHH
Q psy13373 230 LLDTSNACDIIRRYDVVVDACDNAP 254 (525)
Q Consensus 230 ~i~~~~~~~~~~~~dvVi~~~d~~~ 254 (525)
..++..+.+.++|+||+|+....
T Consensus 230 --~~~~l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 230 --KFEDLEEYLAEADIVISSTGAPH 252 (417)
T ss_pred --eHHHHHHHHhhCCEEEECCCCCC
Confidence 11234567789999999987654
No 139
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.14 E-value=0.024 Score=47.33 Aligned_cols=89 Identities=21% Similarity=0.252 Sum_probs=56.2
Q ss_pred cEEEEcCCcchHHHHHHhHHcCC--ceEEEE-eCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeec
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGV--GTLGLA-DYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTL 230 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GV--g~i~lv-D~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 230 (525)
||.|||+|.+|+.++..|+..|+ .+|.++ +.+. .| + +++.+..+ +.+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~-------------------~~---~-~~~~~~~~-~~~------ 50 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP-------------------EK---A-AELAKEYG-VQA------ 50 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH-------------------HH---H-HHHHHHCT-TEE------
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH-------------------HH---H-HHHHHhhc-ccc------
Confidence 68999999999999999999994 445543 2211 12 2 22223332 111
Q ss_pred CCcchHhHhhccCCeEeecCCCHHHHHHHHHH-hHhcCCcEEEe
Q psy13373 231 LDTSNACDIIRRYDVVVDACDNAPTRYLLNDA-CLREGRPLVSA 273 (525)
Q Consensus 231 i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~-~~~~~~p~i~~ 273 (525)
...+..+.++.+|+||.|.........+.+. ....+.-+|+.
T Consensus 51 -~~~~~~~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis~ 93 (96)
T PF03807_consen 51 -TADDNEEAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVISI 93 (96)
T ss_dssp -ESEEHHHHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEEE
T ss_pred -ccCChHHhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEEe
Confidence 1112467788999999999988777777666 34566666664
No 140
>PRK04148 hypothetical protein; Provisional
Probab=96.10 E-value=0.086 Score=47.38 Aligned_cols=97 Identities=16% Similarity=0.199 Sum_probs=70.4
Q ss_pred hcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeec
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTL 230 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 230 (525)
++.+|++||+| .|..+|..|+..|. +++.+|-+. ..++.++ +. . +.+....
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~-------------------~aV~~a~----~~--~--~~~v~dD 66 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINE-------------------KAVEKAK----KL--G--LNAFVDD 66 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHH----Hh--C--CeEEECc
Confidence 34689999999 99999999999996 688877644 1233332 22 1 2333344
Q ss_pred CCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccC
Q psy13373 231 LDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALG 277 (525)
Q Consensus 231 i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g 277 (525)
+.+. ..++.+++|+|-..--..+....+-+.+++.+.+++..-..|
T Consensus 67 lf~p-~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 67 LFNP-NLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred CCCC-CHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 4333 357789999999998888888899999999999988764433
No 141
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.05 E-value=0.042 Score=48.68 Aligned_cols=96 Identities=26% Similarity=0.328 Sum_probs=60.0
Q ss_pred cEEEEcC-CcchHHHHHHhHH-cCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecC
Q psy13373 154 SVLIVGC-GGTGSPCIQYLAA-SGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLL 231 (525)
Q Consensus 154 ~VlViG~-GglGs~ia~~La~-~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i 231 (525)
||+|+|+ |-+|..+++.+.. .|+.=...+|... +.. ...|+| +.+ ..-...+.+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~---~~~------~g~d~g----~~~----~~~~~~~~v------- 57 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP---SAK------VGKDVG----ELA----GIGPLGVPV------- 57 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT---STT------TTSBCH----HHC----TSST-SSBE-------
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC---ccc------ccchhh----hhh----CcCCccccc-------
Confidence 7999999 9999999999999 6777667766644 000 112232 000 000111211
Q ss_pred CcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecc
Q psy13373 232 DTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASA 275 (525)
Q Consensus 232 ~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~ 275 (525)
.++..+++..+|+|||.+ +++.-....++|.++++|+|.+-+
T Consensus 58 -~~~l~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViGTT 99 (124)
T PF01113_consen 58 -TDDLEELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLVIGTT 99 (124)
T ss_dssp -BS-HHHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEEEE-S
T ss_pred -chhHHHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEEEECC
Confidence 133567777899999998 566666788889999999998744
No 142
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.02 E-value=0.021 Score=58.57 Aligned_cols=76 Identities=21% Similarity=0.212 Sum_probs=52.1
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCc-eEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCc--EEEEeee
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVG-TLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNT--IVHAYQT 229 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg-~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v--~v~~~~~ 229 (525)
++|.|||+|++|+.+|..|+..|+. +|.|+|.+. .|++..+..|....+.. .+....
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~-------------------~~~~~~a~dL~~~~~~~~~~~~i~~- 60 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE-------------------EKAEGEALDLEDALAFLPSPVKIKA- 60 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc-------------------chhhHhHhhHHHHhhccCCCeEEEc-
Confidence 3799999999999999999999985 899997643 34555555555543211 111111
Q ss_pred cCCcchHhHhhccCCeEeecCCCH
Q psy13373 230 LLDTSNACDIIRRYDVVVDACDNA 253 (525)
Q Consensus 230 ~i~~~~~~~~~~~~dvVi~~~d~~ 253 (525)
. ..+.+.++|+||.|+...
T Consensus 61 --~---~~~~l~~aDIVIitag~~ 79 (306)
T cd05291 61 --G---DYSDCKDADIVVITAGAP 79 (306)
T ss_pred --C---CHHHhCCCCEEEEccCCC
Confidence 1 123468999999988764
No 143
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.99 E-value=0.011 Score=58.16 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=35.5
Q ss_pred HhhcCcEEEEcCCcchHHHHHHhHHcCCc--eEEEEeCCc
Q psy13373 149 KLLNASVLIVGCGGTGSPCIQYLAASGVG--TLGLADYDR 186 (525)
Q Consensus 149 kL~~~~VlViG~GglGs~ia~~La~~GVg--~i~lvD~d~ 186 (525)
.+++.+|+|+|+|+.|..+++.|+..|++ +|+|+|.+-
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 57889999999999999999999999999 999999873
No 144
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.93 E-value=0.016 Score=53.50 Aligned_cols=100 Identities=15% Similarity=0.250 Sum_probs=59.1
Q ss_pred cEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecCCc
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDT 233 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~ 233 (525)
||.|+|+|..|+.+|..|+..| .+++|...+.=....++.+.. -....|+.+... ...++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~~~~~i~~~~~-----------------n~~~~~~~~l~~-~i~~t- 60 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEEQIEEINETRQ-----------------NPKYLPGIKLPE-NIKAT- 60 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHHHHHHHHHHTS-----------------ETTTSTTSBEET-TEEEE-
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHHHHHHHHHhCC-----------------CCCCCCCcccCc-ccccc-
Confidence 6999999999999999999999 778887665411111111000 001122222221 11122
Q ss_pred chHhHhhccCCeEeecCCCHHHHHHHHHHhH--hcCCcEEEe
Q psy13373 234 SNACDIIRRYDVVVDACDNAPTRYLLNDACL--REGRPLVSA 273 (525)
Q Consensus 234 ~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~--~~~~p~i~~ 273 (525)
.+..+.++++|+||.++-+...+..+.++.. +.+.++|.+
T Consensus 61 ~dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 61 TDLEEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp SSHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEET
T ss_pred cCHHHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEEEe
Confidence 2345778999999999999888877777753 456666654
No 145
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.90 E-value=0.035 Score=52.85 Aligned_cols=84 Identities=24% Similarity=0.242 Sum_probs=56.6
Q ss_pred HhhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEe
Q psy13373 149 KLLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAY 227 (525)
Q Consensus 149 kL~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~ 227 (525)
.+++++|+|+|. |++|..+++.|+..|. ++++++.+ ..|++.+++.+.+.. ...+...
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~~~~~~ 83 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRD-------------------LERAQKAADSLRARF-GEGVGAV 83 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCC-------------------HHHHHHHHHHHHhhc-CCcEEEe
Confidence 367899999996 9999999999999884 88887543 235555666554332 3333332
Q ss_pred eecCCcchHhHhhccCCeEeecCCCHH
Q psy13373 228 QTLLDTSNACDIIRRYDVVVDACDNAP 254 (525)
Q Consensus 228 ~~~i~~~~~~~~~~~~dvVi~~~d~~~ 254 (525)
+. .+.++..+.+.++|+||.++....
T Consensus 84 ~~-~~~~~~~~~~~~~diVi~at~~g~ 109 (194)
T cd01078 84 ET-SDDAARAAAIKGADVVFAAGAAGV 109 (194)
T ss_pred eC-CCHHHHHHHHhcCCEEEECCCCCc
Confidence 21 223334577889999999876543
No 146
>PRK10637 cysG siroheme synthase; Provisional
Probab=95.85 E-value=0.06 Score=58.46 Aligned_cols=95 Identities=14% Similarity=0.140 Sum_probs=69.7
Q ss_pred HhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEee
Q psy13373 149 KLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQ 228 (525)
Q Consensus 149 kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 228 (525)
.|++++|+|||.|.++..=++.|..+|. +|++|-++. . +.+.++...-+++.+.
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~------------~-------------~~~~~l~~~~~i~~~~ 62 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAF------------I-------------PQFTAWADAGMLTLVE 62 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCC------------C-------------HHHHHHHhCCCEEEEe
Confidence 4789999999999999999999999996 688875432 0 1112221122344444
Q ss_pred ecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEe
Q psy13373 229 TLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSA 273 (525)
Q Consensus 229 ~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~ 273 (525)
.... .+.+.++++||.|||+......|.+.|+..++++-.+
T Consensus 63 ~~~~----~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 63 GPFD----ESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred CCCC----hHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEEEC
Confidence 4443 3457889999999999999999999999999875544
No 147
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.85 E-value=0.043 Score=59.86 Aligned_cols=85 Identities=18% Similarity=0.125 Sum_probs=68.2
Q ss_pred HHHHhhcCcEEEEcCCc-chHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEE
Q psy13373 146 GQEKLLNASVLIVGCGG-TGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIV 224 (525)
Q Consensus 146 ~q~kL~~~~VlViG~Gg-lGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v 224 (525)
-++-+.+++|+|-|.|| +|+++++.++..+.++|.++|.|. +|-..+...+++..|..++
T Consensus 244 i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E-------------------~~~~~i~~el~~~~~~~~~ 304 (588)
T COG1086 244 IGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDE-------------------YKLYLIDMELREKFPELKL 304 (588)
T ss_pred HHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCch-------------------HHHHHHHHHHHhhCCCcce
Confidence 46779999999999877 999999999999999999987765 4556677788888888888
Q ss_pred EEeeecCCcch-HhHhhcc--CCeEeec
Q psy13373 225 HAYQTLLDTSN-ACDIIRR--YDVVVDA 249 (525)
Q Consensus 225 ~~~~~~i~~~~-~~~~~~~--~dvVi~~ 249 (525)
..+-.++.+.. ....+.+ .|+|+-+
T Consensus 305 ~~~igdVrD~~~~~~~~~~~kvd~VfHA 332 (588)
T COG1086 305 RFYIGDVRDRDRVERAMEGHKVDIVFHA 332 (588)
T ss_pred EEEecccccHHHHHHHHhcCCCceEEEh
Confidence 88777765543 4566666 8888854
No 148
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=95.81 E-value=0.0062 Score=49.78 Aligned_cols=56 Identities=21% Similarity=0.141 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhHHHHhHhhccccCCCCCCCCcccchhhhhcccccccccccccccCccCCCCCCCCCCCccccccCCC
Q psy13373 15 EKIRQLKEDLTNAETELETILEDRAFKSRPTDGASVRDDTIRRDVSNERDTNGAGQRGAHSTDSQVGDPASPEEIHREPN 94 (525)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (525)
.+|+++++.|.+.||.+...+. .++++ ++||. +. .+++|+. .++| ||.++|+
T Consensus 26 ~tv~~l~~~L~~~~~~~~~~~~--~~~~~----~aVN~----~~--~~~~~~l-----------~dgD-----eVai~PP 77 (81)
T PRK11130 26 PTVEALRQHLAQKGDRWALALE--DGKLL----AAVNQ----TL--VSFDHPL-----------TDGD-----EVAFFPP 77 (81)
T ss_pred CCHHHHHHHHHHhCccHHhhhc--CCCEE----EEECC----EE--cCCCCCC-----------CCCC-----EEEEeCC
Confidence 4789999999999999864443 45655 44554 23 3567888 9999 9999999
Q ss_pred cccC
Q psy13373 95 NVNQ 98 (525)
Q Consensus 95 ~~~~ 98 (525)
++||
T Consensus 78 VsGG 81 (81)
T PRK11130 78 VTGG 81 (81)
T ss_pred CCCC
Confidence 9998
No 149
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.77 E-value=0.024 Score=51.46 Aligned_cols=76 Identities=22% Similarity=0.250 Sum_probs=53.6
Q ss_pred cEEEEcC-CcchHHHHHHhHHcCCc-eEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecC
Q psy13373 154 SVLIVGC-GGTGSPCIQYLAASGVG-TLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLL 231 (525)
Q Consensus 154 ~VlViG~-GglGs~ia~~La~~GVg-~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i 231 (525)
||.|||+ |.+|+.+|..|+..|+. +|.|+|.+. .|++..+.-|....+..........
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~-------------------~~~~g~a~Dl~~~~~~~~~~~~i~~- 61 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE-------------------DKAEGEALDLSHASAPLPSPVRITS- 61 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH-------------------HHHHHHHHHHHHHHHGSTEEEEEEE-
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc-------------------ccceeeehhhhhhhhhccccccccc-
Confidence 7999999 99999999999999984 599987643 2566666666665444422221111
Q ss_pred CcchHhHhhccCCeEeecCCC
Q psy13373 232 DTSNACDIIRRYDVVVDACDN 252 (525)
Q Consensus 232 ~~~~~~~~~~~~dvVi~~~d~ 252 (525)
...+.++++|+||.+...
T Consensus 62 ---~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 62 ---GDYEALKDADIVVITAGV 79 (141)
T ss_dssp ---SSGGGGTTESEEEETTST
T ss_pred ---ccccccccccEEEEeccc
Confidence 134568899999977655
No 150
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.71 E-value=0.043 Score=52.85 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=31.9
Q ss_pred HhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 149 KLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 149 kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
.|++++|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 3788999999999999999999999997 57788755
No 151
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.66 E-value=0.072 Score=62.90 Aligned_cols=98 Identities=20% Similarity=0.263 Sum_probs=63.5
Q ss_pred hcCcEEEEcCCcchHHHHHHhHHcC-Cc------------eEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHh
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAASG-VG------------TLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISA 217 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~~G-Vg------------~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~ 217 (525)
+.++|+|+|+|.+|..++.+|++.+ +. .+++.|. ...+++.+++.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~-------------------~~~~a~~la~~--- 625 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL-------------------YLKDAKETVEG--- 625 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC-------------------CHHHHHHHHHh---
Confidence 4679999999999999999999863 22 2344333 22334333332
Q ss_pred hCCCcEEEEeeecCCc-chHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEec
Q psy13373 218 INRNTIVHAYQTLLDT-SNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSAS 274 (525)
Q Consensus 218 lnp~v~v~~~~~~i~~-~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~ 274 (525)
.|.+.... ..+.+ +...++++++|+||.|+-. .....+...|.+.|+.++...
T Consensus 626 -~~~~~~v~--lDv~D~e~L~~~v~~~DaVIsalP~-~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 626 -IENAEAVQ--LDVSDSESLLKYVSQVDVVISLLPA-SCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred -cCCCceEE--eecCCHHHHHHhhcCCCEEEECCCc-hhhHHHHHHHHHcCCCEEECc
Confidence 24433222 22222 3455666889999998776 455678888999999888753
No 152
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=95.63 E-value=0.0079 Score=48.94 Aligned_cols=54 Identities=26% Similarity=0.297 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhHHHHhHhhccccCCCCCCCCcccchhhhhcccccccccccccccCccCCCCCCCCCCCccccccCCC
Q psy13373 15 EKIRQLKEDLTNAETELETILEDRAFKSRPTDGASVRDDTIRRDVSNERDTNGAGQRGAHSTDSQVGDPASPEEIHREPN 94 (525)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (525)
.+|+++++.|.+.||+|. + .++.+.+.||++.++ .+++. ..+| ++.++|.
T Consensus 27 ~tv~~L~~~L~~~~p~l~----~----~~~~~~v~vn~~~v~------~~~~l-----------~dgD-----evai~Pp 76 (80)
T TIGR01682 27 TTVGELKEHLAKEGPELA----A----SRGQVMVAVNEEYVT------DDALL-----------NEGD-----EVAFIPP 76 (80)
T ss_pred cCHHHHHHHHHHhCchhh----h----hccceEEEECCEEcC------CCcCc-----------CCCC-----EEEEeCC
Confidence 478899999999999642 1 356788999997665 25777 9999 9999999
Q ss_pred cccC
Q psy13373 95 NVNQ 98 (525)
Q Consensus 95 ~~~~ 98 (525)
++||
T Consensus 77 vsGG 80 (80)
T TIGR01682 77 VSGG 80 (80)
T ss_pred CCCC
Confidence 9998
No 153
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.47 E-value=0.041 Score=53.41 Aligned_cols=96 Identities=17% Similarity=0.196 Sum_probs=66.8
Q ss_pred HhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEee
Q psy13373 149 KLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQ 228 (525)
Q Consensus 149 kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 228 (525)
.|++++|+|||.|.+|..=++.|..+|.. ++++-++. .+ .++..+.+ + ++..+.
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~-v~Vvs~~~------------------~~---el~~~~~~-~---~i~~~~ 62 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGAD-VTVVSPEF------------------EP---ELKALIEE-G---KIKWIE 62 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCCE-EEEEcCCc------------------cH---HHHHHHHh-c---Ccchhh
Confidence 37889999999999999999999999975 66654332 11 11111111 1 133322
Q ss_pred ecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEec
Q psy13373 229 TLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSAS 274 (525)
Q Consensus 229 ~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~ 274 (525)
..+. .+.+.++++||.|||+......+.+.|.+.++|+-.+.
T Consensus 63 ~~~~----~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D 104 (210)
T COG1648 63 REFD----AEDLDDAFLVIAATDDEELNERIAKAARERRILVNVVD 104 (210)
T ss_pred cccC----hhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceeccC
Confidence 2222 34455699999999999999999999999999765553
No 154
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=95.42 E-value=0.019 Score=47.37 Aligned_cols=60 Identities=22% Similarity=0.121 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHhHhhccccCCCCCCCCcccchhhhhcccccccccccccccCccCCCCCCCCCCCcccccc
Q psy13373 12 QLKEKIRQLKEDLTNAETELETILEDRAFKSRPTDGASVRDDTIRRDVSNERDTNGAGQRGAHSTDSQVGDPASPEEIHR 91 (525)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (525)
+..+.|+++.+.|.+.++.....+++ +.+++..+++.. .+++|+. ++|| ++.+
T Consensus 25 ~~~~tv~~L~~~l~~~~~~~~~~~~~---------~~~v~~~~~~~~--~~~~t~L-----------~dGD-----eVa~ 77 (84)
T COG1977 25 TVGATVGELEELLPKEGERWLLALED---------NIVVNAANNEFL--VGLDTPL-----------KDGD-----EVAF 77 (84)
T ss_pred cHHHHHHHHHHHHHhhhhhHHhccCc---------cceEEeeeceee--ccccccC-----------CCCC-----EEEE
Confidence 33444455555554444444444443 677777777888 8999999 9999 9999
Q ss_pred CCCcccC
Q psy13373 92 EPNNVNQ 98 (525)
Q Consensus 92 ~~~~~~~ 98 (525)
+|+++||
T Consensus 78 ~PPVsGG 84 (84)
T COG1977 78 FPPVSGG 84 (84)
T ss_pred eCCCCCC
Confidence 9999998
No 155
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=95.38 E-value=0.037 Score=48.09 Aligned_cols=79 Identities=15% Similarity=0.143 Sum_probs=39.3
Q ss_pred cccChhhhHHHHHhcCCCcEEEecCChhhhhcCCCC--------------CeEEeChhh--HHHHHhhcCCchHHHHhhh
Q psy13373 400 EHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLN--------------IASHATMAD--VQLMFAEAGECPAFLESLR 463 (525)
Q Consensus 400 ~~is~~el~~~~l~~~~~~~lIDVR~~~E~~~ghIp--------------GAinip~~~--l~~~~~~~~~~~~~l~~l~ 463 (525)
.+++++++.++ -+.| =-.||+.|+..|=. +-| .-+|+|+.. +... .++.+.++.
T Consensus 13 ~Q~~~~d~~~l-a~~G-fktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~------~v~~f~~~l 82 (110)
T PF04273_consen 13 GQPSPEDLAQL-AAQG-FKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVDGGAITEE------DVEAFADAL 82 (110)
T ss_dssp CS--HHHHHHH-HHCT---EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE----TTT--HH------HHHHHHHHH
T ss_pred CCCCHHHHHHH-HHCC-CcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecCCCCCCHH------HHHHHHHHH
Confidence 46899999987 6665 23799999876521 111 236777643 2111 111222222
Q ss_pred hhcCCCCeEEEEcCcChHHHHHHHHHH
Q psy13373 464 EDILAHRHVFVICRRGNDSQKVVQLLK 490 (525)
Q Consensus 464 ~~~~~~~~Ivv~C~~G~rS~~aa~~L~ 490 (525)
. ...+||++||++|.||...+..-+
T Consensus 83 ~--~~~~Pvl~hC~sG~Ra~~l~~l~~ 107 (110)
T PF04273_consen 83 E--SLPKPVLAHCRSGTRASALWALAQ 107 (110)
T ss_dssp H--TTTTSEEEE-SCSHHHHHHHHHHH
T ss_pred H--hCCCCEEEECCCChhHHHHHHHHh
Confidence 1 135799999999999986665443
No 156
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=95.35 E-value=0.051 Score=56.04 Aligned_cols=91 Identities=18% Similarity=0.217 Sum_probs=59.1
Q ss_pred HHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEe
Q psy13373 148 EKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAY 227 (525)
Q Consensus 148 ~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~ 227 (525)
..+++++|.|||+|.+|.++|+.|...|+ ++..+|... .. .+.+ ...
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~--------~~----------------------~~~~--~~~ 178 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSR--------KS----------------------WPGV--QSF 178 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC--------CC----------------------CCCc--eee
Confidence 45889999999999999999999999998 466666421 00 0011 011
Q ss_pred eecCCcchHhHhhccCCeEeecCC-CHHHHHHHHHHh---HhcCCcEEEec
Q psy13373 228 QTLLDTSNACDIIRRYDVVVDACD-NAPTRYLLNDAC---LREGRPLVSAS 274 (525)
Q Consensus 228 ~~~i~~~~~~~~~~~~dvVi~~~d-~~~~r~~l~~~~---~~~~~p~i~~~ 274 (525)
....+..++++++|+|+.+.. +.+++.++++-. .+.+.-+|+.+
T Consensus 179 ---~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 179 ---AGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred ---cccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence 112346788999999886655 455677777532 23445566653
No 157
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.34 E-value=0.022 Score=58.93 Aligned_cols=37 Identities=16% Similarity=0.334 Sum_probs=32.7
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
++..||.|||+|.+|+.+|..|+..|..+|.|+|-+.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~ 40 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVK 40 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 4568999999999999999999999986799998644
No 158
>PLN00203 glutamyl-tRNA reductase
Probab=95.33 E-value=0.046 Score=60.10 Aligned_cols=78 Identities=15% Similarity=0.225 Sum_probs=53.7
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeee
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQT 229 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~ 229 (525)
|.+++|+|||+|.+|..++++|...|+.+|++++... .|++.+++.+ +.+.+...
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~-------------------era~~La~~~----~g~~i~~~-- 318 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSE-------------------ERVAALREEF----PDVEIIYK-- 318 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCH-------------------HHHHHHHHHh----CCCceEee--
Confidence 5579999999999999999999999999999975431 2344443332 23333221
Q ss_pred cCCcchHhHhhccCCeEeecCCCHH
Q psy13373 230 LLDTSNACDIIRRYDVVVDACDNAP 254 (525)
Q Consensus 230 ~i~~~~~~~~~~~~dvVi~~~d~~~ 254 (525)
..++..+.+.++|+||.||....
T Consensus 319 --~~~dl~~al~~aDVVIsAT~s~~ 341 (519)
T PLN00203 319 --PLDEMLACAAEADVVFTSTSSET 341 (519)
T ss_pred --cHhhHHHHHhcCCEEEEccCCCC
Confidence 11234567889999999976543
No 159
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.27 E-value=0.039 Score=59.08 Aligned_cols=36 Identities=25% Similarity=0.481 Sum_probs=32.5
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
+.+++|+|+|+|.+|..+++.|...|+ +++++|.|.
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp 245 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP 245 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence 588999999999999999999999999 688887654
No 160
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.26 E-value=0.077 Score=54.48 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=29.2
Q ss_pred cCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 152 NASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 152 ~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
..+|.|||+|.+|+.+|++|+..|. +++++|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 3579999999999999999999996 68888765
No 161
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=95.26 E-value=0.098 Score=45.93 Aligned_cols=94 Identities=20% Similarity=0.225 Sum_probs=56.4
Q ss_pred cEEEEc-CCcchHHHHHHhHHc-CCceEEEEeCCcccccCCCcccccCCCC-CCCcHHHHHHHHHHhhCCCcEEEEeeec
Q psy13373 154 SVLIVG-CGGTGSPCIQYLAAS-GVGTLGLADYDRVELSNLHRQVIHTTHT-IGQPKVTSAKRFISAINRNTIVHAYQTL 230 (525)
Q Consensus 154 ~VlViG-~GglGs~ia~~La~~-GVg~i~lvD~d~V~~sNL~Rq~l~~~~d-iG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 230 (525)
||.||| .|-+|.++++.|... .+..+.++ ..+. .|++=.+... .......+....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~----------------~~~~~~g~~~~~~~~----~~~~~~~~~~~~-- 58 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALV----------------SSSRSAGKPLSEVFP----HPKGFEDLSVED-- 58 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEE----------------ESTTTTTSBHHHTTG----GGTTTEEEBEEE--
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEee----------------eeccccCCeeehhcc----ccccccceeEee--
Confidence 699999 777999999999984 23333332 2222 5554222222 111111222221
Q ss_pred CCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEec
Q psy13373 231 LDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSAS 274 (525)
Q Consensus 231 i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~ 274 (525)
. ..+.+.++|+||.|+++...+.+...+ .+.|+++|+.+
T Consensus 59 ~----~~~~~~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s 97 (121)
T PF01118_consen 59 A----DPEELSDVDVVFLALPHGASKELAPKL-LKAGIKVIDLS 97 (121)
T ss_dssp T----SGHHHTTESEEEE-SCHHHHHHHHHHH-HHTTSEEEESS
T ss_pred c----chhHhhcCCEEEecCchhHHHHHHHHH-hhCCcEEEeCC
Confidence 1 234458999999999987776655555 78899999864
No 162
>PRK08618 ornithine cyclodeaminase; Validated
Probab=95.23 E-value=0.086 Score=54.64 Aligned_cols=96 Identities=14% Similarity=0.194 Sum_probs=64.8
Q ss_pred hcCcEEEEcCCcchHHHHHHhH-HcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeee
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLA-ASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQT 229 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La-~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~ 229 (525)
..++|+|||+|+.|...+..|. ..|++++.++|.+ ..|++.+++.+.+.. .+++..+
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~~~~~~~~~-~~~~~~~-- 183 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT-------------------FEKAYAFAQEIQSKF-NTEIYVV-- 183 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhc-CCcEEEe--
Confidence 4678999999999998888875 5699999998654 246666677666533 2333322
Q ss_pred cCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecc
Q psy13373 230 LLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASA 275 (525)
Q Consensus 230 ~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~ 275 (525)
++..+.+.++|+||.||.+.. ..+. .+.+.|.-++..+.
T Consensus 184 ----~~~~~~~~~aDiVi~aT~s~~--p~i~-~~l~~G~hV~~iGs 222 (325)
T PRK08618 184 ----NSADEAIEEADIIVTVTNAKT--PVFS-EKLKKGVHINAVGS 222 (325)
T ss_pred ----CCHHHHHhcCCEEEEccCCCC--cchH-HhcCCCcEEEecCC
Confidence 124567789999999987653 3445 55566665554443
No 163
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=95.10 E-value=0.045 Score=49.23 Aligned_cols=82 Identities=16% Similarity=0.124 Sum_probs=47.4
Q ss_pred cccChhhhHHHHHhcCCCcEEEecCChhhhhcCC----------CCCe--EEeChhhHHHHHhhcCCchHHHHhhhhhcC
Q psy13373 400 EHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMS----------LNIA--SHATMADVQLMFAEAGECPAFLESLREDIL 467 (525)
Q Consensus 400 ~~is~~el~~~~l~~~~~~~lIDVR~~~E~~~gh----------IpGA--inip~~~l~~~~~~~~~~~~~l~~l~~~~~ 467 (525)
.+++++++..+ -+.+ =-.|||.|+..|-.... -+|. +|+|+..-.. .......+.++.. .
T Consensus 13 ~qlt~~d~~~L-~~~G-iktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~----~~~~v~~f~~~~~--~ 84 (135)
T TIGR01244 13 PQLTKADAAQA-AQLG-FKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDI----TPDDVETFRAAIG--A 84 (135)
T ss_pred CCCCHHHHHHH-HHCC-CcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCC----CHHHHHHHHHHHH--h
Confidence 57788998876 5544 34799999987743211 0222 5676542100 0011122223222 2
Q ss_pred CCCeEEEEcCcChHHHHHHHHH
Q psy13373 468 AHRHVFVICRRGNDSQKVVQLL 489 (525)
Q Consensus 468 ~~~~Ivv~C~~G~rS~~aa~~L 489 (525)
.++||++||++|.|+..++..+
T Consensus 85 ~~~pvL~HC~sG~Rt~~l~al~ 106 (135)
T TIGR01244 85 AEGPVLAYCRSGTRSSLLWGFR 106 (135)
T ss_pred CCCCEEEEcCCChHHHHHHHHH
Confidence 4689999999999988766543
No 164
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.09 E-value=0.038 Score=59.39 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=52.4
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeee
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQT 229 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~ 229 (525)
+.+.+|+|+|+|.+|..++++|...|+.+++++|.+. .|+..+++.+ . ..+.
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~-------------------~ra~~la~~~---g--~~~~---- 231 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL-------------------ERAEELAEEF---G--GEAI---- 231 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH-------------------HHHHHHHHHc---C--CcEe----
Confidence 6789999999999999999999999999999976532 2333333322 1 1111
Q ss_pred cCCcchHhHhhccCCeEeecCCCHH
Q psy13373 230 LLDTSNACDIIRRYDVVVDACDNAP 254 (525)
Q Consensus 230 ~i~~~~~~~~~~~~dvVi~~~d~~~ 254 (525)
..++..+.+.++|+||.|+....
T Consensus 232 --~~~~~~~~l~~aDvVI~aT~s~~ 254 (423)
T PRK00045 232 --PLDELPEALAEADIVISSTGAPH 254 (423)
T ss_pred --eHHHHHHHhccCCEEEECCCCCC
Confidence 11233456788999999987654
No 165
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.08 E-value=0.033 Score=57.61 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=32.6
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
.++.||.|||+|.+|+.++..|+..|+.+|.|+|.+
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~ 38 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI 38 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence 356799999999999999999999998889999875
No 166
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.04 E-value=0.087 Score=54.37 Aligned_cols=77 Identities=22% Similarity=0.245 Sum_probs=53.1
Q ss_pred hcCcEEEEcCCcchHHHHHHhHHcCCc-eEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCc-EEEEee
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAASGVG-TLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNT-IVHAYQ 228 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~~GVg-~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v-~v~~~~ 228 (525)
+..||.|||+|.+|+.+|..|+..|+- +|.|+|.+ +.|++..+.-|....|.. ++....
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~-------------------~~~~~g~~~Dl~~~~~~~~~~~i~~ 65 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN-------------------KEKAEGDAMDLSHAVPFTSPTKIYA 65 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------CchhHHHHHHHHhhccccCCeEEEe
Confidence 346999999999999999999999985 79998652 344555666666665432 222211
Q ss_pred ecCCcchHhHhhccCCeEeecCCC
Q psy13373 229 TLLDTSNACDIIRRYDVVVDACDN 252 (525)
Q Consensus 229 ~~i~~~~~~~~~~~~dvVi~~~d~ 252 (525)
. ..+-++++|+||.+...
T Consensus 66 -----~-~~~~~~~adivIitag~ 83 (315)
T PRK00066 66 -----G-DYSDCKDADLVVITAGA 83 (315)
T ss_pred -----C-CHHHhCCCCEEEEecCC
Confidence 1 13457999999876554
No 167
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=94.95 E-value=0.11 Score=53.54 Aligned_cols=80 Identities=21% Similarity=0.188 Sum_probs=53.6
Q ss_pred HHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEE
Q psy13373 147 QEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHA 226 (525)
Q Consensus 147 q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~ 226 (525)
...|++++|.|||+|.+|..+|++|..+|+. +.+.|... ++. +..... ...+
T Consensus 11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~~-ViV~~r~~--------------------~s~---~~A~~~--G~~v-- 62 (335)
T PRK13403 11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGVE-VVVGVRPG--------------------KSF---EVAKAD--GFEV-- 62 (335)
T ss_pred hhhhCcCEEEEEeEcHHHHHHHHHHHHCcCE-EEEEECcc--------------------hhh---HHHHHc--CCEE--
Confidence 3569999999999999999999999999994 55554210 000 001111 2211
Q ss_pred eeecCCcchHhHhhccCCeEeecCCCHHHHHHHHH
Q psy13373 227 YQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLND 261 (525)
Q Consensus 227 ~~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~ 261 (525)
.+..++++.+|+|+.+.-+...+..+++
T Consensus 63 -------~sl~Eaak~ADVV~llLPd~~t~~V~~~ 90 (335)
T PRK13403 63 -------MSVSEAVRTAQVVQMLLPDEQQAHVYKA 90 (335)
T ss_pred -------CCHHHHHhcCCEEEEeCCChHHHHHHHH
Confidence 1356888999999887776666666654
No 168
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=94.95 E-value=0.12 Score=50.46 Aligned_cols=38 Identities=29% Similarity=0.336 Sum_probs=35.0
Q ss_pred HhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 149 KLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 149 kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
.|+.++|+|.|.|.+|+.+|+.|...|.+.+.+.|.+-
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 47889999999999999999999999999999998654
No 169
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.92 E-value=0.14 Score=54.75 Aligned_cols=36 Identities=22% Similarity=0.471 Sum_probs=31.9
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
+.+.+|+|+|+|.+|..+++.+...|+ +++++|.|.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~ 235 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDP 235 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence 578899999999999999999999999 688887654
No 170
>PRK07574 formate dehydrogenase; Provisional
Probab=94.88 E-value=0.18 Score=53.41 Aligned_cols=93 Identities=23% Similarity=0.299 Sum_probs=58.8
Q ss_pred HHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEe
Q psy13373 148 EKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAY 227 (525)
Q Consensus 148 ~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~ 227 (525)
..|.+++|.|||+|.+|..+|+.|...|+ ++..+|.... . .+.. .+. . +..
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~-----~--------------~~~~----~~~--g--~~~- 238 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRL-----P--------------EEVE----QEL--G--LTY- 238 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCC-----c--------------hhhH----hhc--C--cee-
Confidence 45899999999999999999999999998 4666654220 0 0000 011 1 111
Q ss_pred eecCCcchHhHhhccCCeEeecC-CCHHHHHHHHHHh---HhcCCcEEEec
Q psy13373 228 QTLLDTSNACDIIRRYDVVVDAC-DNAPTRYLLNDAC---LREGRPLVSAS 274 (525)
Q Consensus 228 ~~~i~~~~~~~~~~~~dvVi~~~-d~~~~r~~l~~~~---~~~~~p~i~~~ 274 (525)
.....++++.+|+|+.+. .+.+++.++++.. .+.+.-+|+.+
T Consensus 239 -----~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 284 (385)
T PRK07574 239 -----HVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTA 284 (385)
T ss_pred -----cCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECC
Confidence 112567889999987554 4556777776532 33455567654
No 171
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.86 E-value=0.42 Score=41.05 Aligned_cols=91 Identities=18% Similarity=0.127 Sum_probs=59.4
Q ss_pred EEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecCCcc
Q psy13373 155 VLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDTS 234 (525)
Q Consensus 155 VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~~ 234 (525)
|+|+|.|.+|..+++.|... --.++++|.|.= + .+.+++.. +.++....++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~d~~-------------------~----~~~~~~~~----~~~i~gd~~~~ 52 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDRDPE-------------------R----VEELREEG----VEVIYGDATDP 52 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEEESSHH-------------------H----HHHHHHTT----SEEEES-TTSH
T ss_pred eEEEcCCHHHHHHHHHHHhC-CCEEEEEECCcH-------------------H----HHHHHhcc----cccccccchhh
Confidence 78999999999999999994 467999988751 1 22233322 23444555544
Q ss_pred hHhH--hhccCCeEeecCCCHHHHHHHHHHhHh-cCCcEEEe
Q psy13373 235 NACD--IIRRYDVVVDACDNAPTRYLLNDACLR-EGRPLVSA 273 (525)
Q Consensus 235 ~~~~--~~~~~dvVi~~~d~~~~r~~l~~~~~~-~~~p~i~~ 273 (525)
...+ -+.+++.||.++++......+...+++ ++.+.|.+
T Consensus 53 ~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 53 EVLERAGIEKADAVVILTDDDEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEEE
T ss_pred hHHhhcCccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEEE
Confidence 3322 357899999999988877777777776 44344443
No 172
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=94.86 E-value=0.08 Score=52.70 Aligned_cols=104 Identities=16% Similarity=0.262 Sum_probs=67.5
Q ss_pred HHhhcCcEEEEcCCcchHHHHHHhHHc----CC------ceEEEEeCCcc-cccCCCcccccCCCCCCCcHHHHHHHHHH
Q psy13373 148 EKLLNASVLIVGCGGTGSPCIQYLAAS----GV------GTLGLADYDRV-ELSNLHRQVIHTTHTIGQPKVTSAKRFIS 216 (525)
Q Consensus 148 ~kL~~~~VlViG~GglGs~ia~~La~~----GV------g~i~lvD~d~V-~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~ 216 (525)
++|++.||+++|+|..|..|++.|+.+ |+ ++|.++|.+=+ ..+. .++ ...-+...+
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r---------~~l----~~~~~~~a~ 87 (255)
T PF03949_consen 21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR---------EDL----NPHKKPFAR 87 (255)
T ss_dssp S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT---------SSH----SHHHHHHHB
T ss_pred CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC---------ccC----Chhhhhhhc
Confidence 569999999999999999999999999 99 89999997632 2111 112 122233333
Q ss_pred hhCCCcEEEEeeecCCcchHhHhhccC--CeEeecCCCH--HHHHHHHHHhHhcCCcEEEe
Q psy13373 217 AINRNTIVHAYQTLLDTSNACDIIRRY--DVVVDACDNA--PTRYLLNDACLREGRPLVSA 273 (525)
Q Consensus 217 ~lnp~v~v~~~~~~i~~~~~~~~~~~~--dvVi~~~d~~--~~r~~l~~~~~~~~~p~i~~ 273 (525)
+.++.... .+..+.++.. |++|-++.-. -.+..|..++.....|+|..
T Consensus 88 ~~~~~~~~---------~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~ 139 (255)
T PF03949_consen 88 KTNPEKDW---------GSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFP 139 (255)
T ss_dssp SSSTTT-----------SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE
T ss_pred cCcccccc---------cCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEE
Confidence 44432211 2466777776 9999765322 25667778888788898876
No 173
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=94.80 E-value=0.017 Score=47.26 Aligned_cols=53 Identities=13% Similarity=0.095 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhHHHHhHhhccccCCCCCCCCcccchhhhhcccccccccccccccCccCCCCCCCCCCCccccccCCCc
Q psy13373 16 KIRQLKEDLTNAETELETILEDRAFKSRPTDGASVRDDTIRRDVSNERDTNGAGQRGAHSTDSQVGDPASPEEIHREPNN 95 (525)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (525)
+|+++++.|.+.||.|.+.+ +.+.+.||++.+ ..+++. .++| ++..+|++
T Consensus 30 tv~~L~~~l~~~~p~l~~~~--------~~~~vavN~~~v------~~~~~l-----------~dgD-----eVai~Ppv 79 (82)
T PLN02799 30 TTADCLAELVAKFPSLEEVR--------SCCVLALNEEYT------TESAAL-----------KDGD-----ELAIIPPI 79 (82)
T ss_pred cHHHHHHHHHHHChhHHHHh--------hCcEEEECCEEc------CCCcCc-----------CCCC-----EEEEeCCC
Confidence 58899999999999998543 356788888543 256777 9999 99999999
Q ss_pred ccC
Q psy13373 96 VNQ 98 (525)
Q Consensus 96 ~~~ 98 (525)
+||
T Consensus 80 sGG 82 (82)
T PLN02799 80 SGG 82 (82)
T ss_pred CCC
Confidence 998
No 174
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.77 E-value=0.13 Score=52.85 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=51.4
Q ss_pred cEEEEcCCcchHHHHHHhHHcCC-ceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCc---EEEEeee
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGV-GTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNT---IVHAYQT 229 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GV-g~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v---~v~~~~~ 229 (525)
||.|||+|.+|+.+|..|+..|+ ++|.|+|- -+.|++..+--|....+.. .+..+..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di-------------------~~~~a~g~a~DL~~~~~~~~~~~~~i~~~ 61 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV-------------------NEGVAEGEALDFHHATALTYSTNTKIRAG 61 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CcchhhHHHHHHHhhhccCCCCCEEEEEC
Confidence 68999999999999999999887 68999874 2345555555566544322 2222221
Q ss_pred cCCcchHhHhhccCCeEeecCCC
Q psy13373 230 LLDTSNACDIIRRYDVVVDACDN 252 (525)
Q Consensus 230 ~i~~~~~~~~~~~~dvVi~~~d~ 252 (525)
..+.++++|+||.+...
T Consensus 62 ------~y~~~~~aDivvitaG~ 78 (307)
T cd05290 62 ------DYDDCADADIIVITAGP 78 (307)
T ss_pred ------CHHHhCCCCEEEECCCC
Confidence 24678999999876554
No 175
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=94.75 E-value=0.17 Score=51.01 Aligned_cols=104 Identities=16% Similarity=0.284 Sum_probs=70.2
Q ss_pred HHhhcCcEEEEcCCcchHHHHHHhHHc----CC------ceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHh
Q psy13373 148 EKLLNASVLIVGCGGTGSPCIQYLAAS----GV------GTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISA 217 (525)
Q Consensus 148 ~kL~~~~VlViG~GglGs~ia~~La~~----GV------g~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~ 217 (525)
++|++.+|+++|+|+.|..|++.|..+ |+ ++|.++|.+=+=..+ | .|+-..|...+ ++
T Consensus 21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~--r------~~l~~~~~~~a----~~ 88 (279)
T cd05312 21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKD--R------KDLTPFKKPFA----RK 88 (279)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCC--C------CcchHHHHHHH----hh
Confidence 578899999999999999999999988 99 799999976522211 1 12222333322 22
Q ss_pred hCCCcEEEEeeecCCcchHhHhhc--cCCeEeecCC--CHHHHHHHHHHhHhcCCcEEEe
Q psy13373 218 INRNTIVHAYQTLLDTSNACDIIR--RYDVVVDACD--NAPTRYLLNDACLREGRPLVSA 273 (525)
Q Consensus 218 lnp~v~v~~~~~~i~~~~~~~~~~--~~dvVi~~~d--~~~~r~~l~~~~~~~~~p~i~~ 273 (525)
.++ . ...+..+.++ +.|++|-++. ..-.+..|..++.....|+|..
T Consensus 89 ~~~-------~---~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFa 138 (279)
T cd05312 89 DEE-------K---EGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFA 138 (279)
T ss_pred cCc-------c---cCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 232 0 1123677788 8899997664 2335567777877778888876
No 176
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=94.73 E-value=0.13 Score=53.29 Aligned_cols=75 Identities=16% Similarity=0.177 Sum_probs=55.1
Q ss_pred cCcEEEEcCCcchHHHHHHhH-HcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeec
Q psy13373 152 NASVLIVGCGGTGSPCIQYLA-ASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTL 230 (525)
Q Consensus 152 ~~~VlViG~GglGs~ia~~La-~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 230 (525)
.++|+|||+|+.|...++.|. ..++.++++++.+. .|++.+++++.+..+ +++...
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~-------------------~~a~~~a~~~~~~~g-~~v~~~--- 185 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDS-------------------AKAEALALQLSSLLG-IDVTAA--- 185 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCH-------------------HHHHHHHHHHHhhcC-ceEEEe---
Confidence 468999999999999999997 47899999974422 467777777765332 333321
Q ss_pred CCcchHhHhhccCCeEeecCCC
Q psy13373 231 LDTSNACDIIRRYDVVVDACDN 252 (525)
Q Consensus 231 i~~~~~~~~~~~~dvVi~~~d~ 252 (525)
++..+.+.++|+||.||..
T Consensus 186 ---~~~~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 186 ---TDPRAAMSGADIIVTTTPS 204 (326)
T ss_pred ---CCHHHHhccCCEEEEecCC
Confidence 2345677899999999865
No 177
>PRK06141 ornithine cyclodeaminase; Validated
Probab=94.73 E-value=0.12 Score=53.35 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=55.7
Q ss_pred HhhcCcEEEEcCCcchHHHHHHhHH-cCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEe
Q psy13373 149 KLLNASVLIVGCGGTGSPCIQYLAA-SGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAY 227 (525)
Q Consensus 149 kL~~~~VlViG~GglGs~ia~~La~-~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~ 227 (525)
+...++|+|||+|+.|..+++.+.. .++.+|++++.. ..|++.+++.+.+.. ..+...
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs-------------------~~~a~~~a~~~~~~g--~~~~~~ 180 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD-------------------PAKAEALAAELRAQG--FDAEVV 180 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcC--CceEEe
Confidence 3456899999999999999987765 688999987442 356777777776542 222221
Q ss_pred eecCCcchHhHhhccCCeEeecCCCH
Q psy13373 228 QTLLDTSNACDIIRRYDVVVDACDNA 253 (525)
Q Consensus 228 ~~~i~~~~~~~~~~~~dvVi~~~d~~ 253 (525)
++..+.+.++|+|+.|+.+.
T Consensus 181 ------~~~~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 181 ------TDLEAAVRQADIISCATLST 200 (314)
T ss_pred ------CCHHHHHhcCCEEEEeeCCC
Confidence 22456778999999988753
No 178
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=94.68 E-value=0.26 Score=49.37 Aligned_cols=91 Identities=21% Similarity=0.262 Sum_probs=59.4
Q ss_pred CcEEEEcC-CcchHHHHHHhHHc-CCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeec
Q psy13373 153 ASVLIVGC-GGTGSPCIQYLAAS-GVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTL 230 (525)
Q Consensus 153 ~~VlViG~-GglGs~ia~~La~~-GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 230 (525)
.+|+|+|+ |.+|..++..+... ++.-..++|.+.- .... . ....+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~---~~~~---~---------------------~~~~i~----- 49 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGS---PLVG---Q---------------------GALGVA----- 49 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc---cccc---c---------------------CCCCcc-----
Confidence 37999999 99999999988864 6666666766531 1100 0 001111
Q ss_pred CCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccCc
Q psy13373 231 LDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGL 278 (525)
Q Consensus 231 i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~ 278 (525)
...+..+++.++|+||+++ ++.....+...|.++|+|++.+ +.|+
T Consensus 50 -~~~dl~~ll~~~DvVid~t-~p~~~~~~~~~al~~G~~vvig-ttG~ 94 (257)
T PRK00048 50 -ITDDLEAVLADADVLIDFT-TPEATLENLEFALEHGKPLVIG-TTGF 94 (257)
T ss_pred -ccCCHHHhccCCCEEEECC-CHHHHHHHHHHHHHcCCCEEEE-CCCC
Confidence 1122455667899999987 4455567888999999999965 4443
No 179
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.56 E-value=0.074 Score=54.02 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=31.2
Q ss_pred HhhcCcEEEEcCCc-chHHHHHHhHHcCCceEEEEe
Q psy13373 149 KLLNASVLIVGCGG-TGSPCIQYLAASGVGTLGLAD 183 (525)
Q Consensus 149 kL~~~~VlViG~Gg-lGs~ia~~La~~GVg~i~lvD 183 (525)
.+++++|+|+|.|+ +|..++..|...|. .+++++
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~ 190 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICH 190 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEe
Confidence 36889999999999 99999999999999 899875
No 180
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=94.56 E-value=0.073 Score=54.07 Aligned_cols=78 Identities=24% Similarity=0.266 Sum_probs=45.9
Q ss_pred EEEEcCCc-chHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCC--cEE--EEeee
Q psy13373 155 VLIVGCGG-TGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRN--TIV--HAYQT 229 (525)
Q Consensus 155 VlViG~Gg-lGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~--v~v--~~~~~ 229 (525)
|+|.|+|| +|+++++.|++.|..+|.++|.|.-...+ +.+.+++..++ ++. ..+..
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~-------------------l~~~l~~~~~~~~v~~~~~~vig 61 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYE-------------------LERELRSRFPDPKVRFEIVPVIG 61 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHH-------------------HHHHCHHHC--TTCEEEEE--CT
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHH-------------------HHHHHhhcccccCcccccCceee
Confidence 78888665 99999999999999999999987744333 44444444333 432 23344
Q ss_pred cCCcch-HhHhhc--cCCeEeecCC
Q psy13373 230 LLDTSN-ACDIIR--RYDVVVDACD 251 (525)
Q Consensus 230 ~i~~~~-~~~~~~--~~dvVi~~~d 251 (525)
++.+.. ....++ +.|+|+-+..
T Consensus 62 Dvrd~~~l~~~~~~~~pdiVfHaAA 86 (293)
T PF02719_consen 62 DVRDKERLNRIFEEYKPDIVFHAAA 86 (293)
T ss_dssp SCCHHHHHHHHTT--T-SEEEE---
T ss_pred cccCHHHHHHHHhhcCCCEEEEChh
Confidence 454432 345566 7888886543
No 181
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.53 E-value=0.33 Score=47.76 Aligned_cols=82 Identities=13% Similarity=0.161 Sum_probs=50.3
Q ss_pred hcCcEEEEcCCcchHHHHHHhHHcCC---ceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEe
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAASGV---GTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAY 227 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~~GV---g~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~ 227 (525)
+..+|.|||+|.+|..++..|...|. ..+.+++.. ...|++.++ .+. .+. ..
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~------------------~~~~~~~~~---~~~--~~~--~~ 57 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS------------------NVEKLDQLQ---ARY--NVS--TT 57 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC------------------CHHHHHHHH---HHc--CcE--Ee
Confidence 46789999999999999999998873 234333221 011222222 122 122 11
Q ss_pred eecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHh
Q psy13373 228 QTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDAC 263 (525)
Q Consensus 228 ~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~ 263 (525)
.+..+.++++|+||.|+-+...+..+.++.
T Consensus 58 ------~~~~~~~~~~DiViiavp~~~~~~v~~~l~ 87 (245)
T PRK07634 58 ------TDWKQHVTSVDTIVLAMPPSAHEELLAELS 87 (245)
T ss_pred ------CChHHHHhcCCEEEEecCHHHHHHHHHHHH
Confidence 123456788999999988876666666554
No 182
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=94.53 E-value=0.071 Score=55.31 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=32.9
Q ss_pred HhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeC
Q psy13373 149 KLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 149 kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
.|.+++|+|||+|-+|.-++++|...|+++|++...
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nR 206 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSR 206 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcC
Confidence 378899999999999999999999999999999743
No 183
>KOG4169|consensus
Probab=94.52 E-value=0.093 Score=51.07 Aligned_cols=79 Identities=22% Similarity=0.311 Sum_probs=59.3
Q ss_pred hhcCcEEEE-cCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEee
Q psy13373 150 LLNASVLIV-GCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQ 228 (525)
Q Consensus 150 L~~~~VlVi-G~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 228 (525)
+.+++++++ |+||+|-++++.|...|++.+.+.|.-. | -.+..+|+++||.+++..+.
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~E----n-----------------~~a~akL~ai~p~~~v~F~~ 61 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEE----N-----------------PEAIAKLQAINPSVSVIFIK 61 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhh----C-----------------HHHHHHHhccCCCceEEEEE
Confidence 457788888 5999999999999999999988865422 1 24566899999999999888
Q ss_pred ecCCcch-H-------hHhhccCCeEeec
Q psy13373 229 TLLDTSN-A-------CDIIRRYDVVVDA 249 (525)
Q Consensus 229 ~~i~~~~-~-------~~~~~~~dvVi~~ 249 (525)
-+++... . ..-+...|++|+.
T Consensus 62 ~DVt~~~~~~~~f~ki~~~fg~iDIlINg 90 (261)
T KOG4169|consen 62 CDVTNRGDLEAAFDKILATFGTIDILING 90 (261)
T ss_pred eccccHHHHHHHHHHHHHHhCceEEEEcc
Confidence 7776532 1 2234567888853
No 184
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=94.51 E-value=0.13 Score=52.62 Aligned_cols=72 Identities=21% Similarity=0.227 Sum_probs=51.7
Q ss_pred EEEEcCCcchHHHHHHhHHcCC-ceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCc---EEEEeeec
Q psy13373 155 VLIVGCGGTGSPCIQYLAASGV-GTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNT---IVHAYQTL 230 (525)
Q Consensus 155 VlViG~GglGs~ia~~La~~GV-g~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v---~v~~~~~~ 230 (525)
|.|||+|.+|+.+|..|+..|+ .+|+|+|.+. .|++..+..|....+.. ++..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~-------------------~~~~g~~~DL~~~~~~~~~~~i~~---- 57 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNE-------------------EKAKGDALDLSHASAFLATGTIVR---- 57 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc-------------------cHHHHHHHhHHHhccccCCCeEEE----
Confidence 5799999999999999999997 6799987632 45666666777765542 2221
Q ss_pred CCcchHhHhhccCCeEeecCCC
Q psy13373 231 LDTSNACDIIRRYDVVVDACDN 252 (525)
Q Consensus 231 i~~~~~~~~~~~~dvVi~~~d~ 252 (525)
..+ .+.++++|+||.|...
T Consensus 58 -~~~--~~~l~~aDiVIitag~ 76 (300)
T cd00300 58 -GGD--YADAADADIVVITAGA 76 (300)
T ss_pred -CCC--HHHhCCCCEEEEcCCC
Confidence 111 3578999999987765
No 185
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.46 E-value=0.047 Score=55.21 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=29.5
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
.+|.|||+|-+|+.+|..|+..|. +++++|.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCH
Confidence 479999999999999999999997 788888653
No 186
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=94.46 E-value=0.076 Score=54.30 Aligned_cols=115 Identities=13% Similarity=0.161 Sum_probs=60.8
Q ss_pred cEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhh-CCCcEEEEeeecCC
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAI-NRNTIVHAYQTLLD 232 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~l-np~v~v~~~~~~i~ 232 (525)
+|.|||+|.+|+.++.+|+..|. ++.++|.+.-....+... |...+....+..... .+++-+...+....
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~ 72 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKED--------RTTGVANLRELSQRLSAPRVVWVMVPHGIV 72 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc--------CCcccCCHHHHHhhcCCCCEEEEEcCchHH
Confidence 69999999999999999999995 577777654221111111 111111111111111 23444444433311
Q ss_pred cchH---hHhhccCCeEeecCCCH-HHHHHHHHHhHhcCCcEEEecccC
Q psy13373 233 TSNA---CDIIRRYDVVVDACDNA-PTRYLLNDACLREGRPLVSASALG 277 (525)
Q Consensus 233 ~~~~---~~~~~~~dvVi~~~d~~-~~r~~l~~~~~~~~~p~i~~~~~g 277 (525)
.+-. ...+..-++||+++... .....+.+.+...++.++.+.+.|
T Consensus 73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsG 121 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSG 121 (298)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCC
Confidence 1111 12233446777775553 233344555667778888877655
No 187
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=94.37 E-value=0.14 Score=45.55 Aligned_cols=83 Identities=16% Similarity=0.163 Sum_probs=48.3
Q ss_pred hcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeec
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTL 230 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 230 (525)
...+|.|||+|-+|..+++.|...|.. |.-+ ++ +....++++...-+...+.
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~-v~~v---------------~s-------rs~~sa~~a~~~~~~~~~~----- 60 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHE-VVGV---------------YS-------RSPASAERAAAFIGAGAIL----- 60 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSE-EEEE---------------SS-------CHH-HHHHHHC--TT---------
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCe-EEEE---------------Ee-------CCccccccccccccccccc-----
Confidence 346899999999999999999999964 4322 11 1233445555544443222
Q ss_pred CCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHh
Q psy13373 231 LDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLR 265 (525)
Q Consensus 231 i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~ 265 (525)
+..+.+.++|+||.|+-+-.......+++..
T Consensus 61 ----~~~~~~~~aDlv~iavpDdaI~~va~~La~~ 91 (127)
T PF10727_consen 61 ----DLEEILRDADLVFIAVPDDAIAEVAEQLAQY 91 (127)
T ss_dssp -----TTGGGCC-SEEEE-S-CCHHHHHHHHHHCC
T ss_pred ----ccccccccCCEEEEEechHHHHHHHHHHHHh
Confidence 1245678899999888776776666666543
No 188
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.35 E-value=0.15 Score=52.43 Aligned_cols=100 Identities=16% Similarity=0.214 Sum_probs=55.9
Q ss_pred cEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecCCc
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDT 233 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~ 233 (525)
+|.|||+|.+|+.++..|+..|.. ++++|.+.-....+..+.. .....+.. ...+ .+.. .
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~-V~~~~r~~~~~~~~~~~~~-~~~~~~~~----------~~~~--~~~~-----~- 62 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHD-VTLWARDPEQAAEINADRE-NPRYLPGI----------KLPD--NLRA-----T- 62 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCE-EEEEECCHHHHHHHHHcCc-ccccCCCC----------cCCC--CeEE-----e-
Confidence 799999999999999999999874 7888765321111111100 00000000 0000 1111 1
Q ss_pred chHhHhhccCCeEeecCCCHHHHHHHHHHhH--hcCCcEEEe
Q psy13373 234 SNACDIIRRYDVVVDACDNAPTRYLLNDACL--REGRPLVSA 273 (525)
Q Consensus 234 ~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~--~~~~p~i~~ 273 (525)
.+..+.+.++|+||.|+-+...+..+..+.. ..+..+|+.
T Consensus 63 ~~~~~~~~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~ 104 (325)
T PRK00094 63 TDLAEALADADLILVAVPSQALREVLKQLKPLLPPDAPIVWA 104 (325)
T ss_pred CCHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 1234567889999999888766666555432 234445554
No 189
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=94.31 E-value=0.21 Score=51.76 Aligned_cols=78 Identities=18% Similarity=0.139 Sum_probs=51.6
Q ss_pred HHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEe
Q psy13373 148 EKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAY 227 (525)
Q Consensus 148 ~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~ 227 (525)
..|++++|.|||+|.+|..+|++|..+|+ ++.+.+... .|. .+...+. .+.+
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~r~~-------------------~~s---~~~A~~~--G~~~--- 64 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGLREG-------------------SKS---WKKAEAD--GFEV--- 64 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEECCc-------------------hhh---HHHHHHC--CCee---
Confidence 34889999999999999999999999998 455543211 011 1111111 2211
Q ss_pred eecCCcchHhHhhccCCeEeecCCCHHHHHHH
Q psy13373 228 QTLLDTSNACDIIRRYDVVVDACDNAPTRYLL 259 (525)
Q Consensus 228 ~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l 259 (525)
. +..+.++.+|+|+.++-+...+..+
T Consensus 65 ----~--s~~eaa~~ADVVvLaVPd~~~~~V~ 90 (330)
T PRK05479 65 ----L--TVAEAAKWADVIMILLPDEVQAEVY 90 (330)
T ss_pred ----C--CHHHHHhcCCEEEEcCCHHHHHHHH
Confidence 1 2457788999999988776666555
No 190
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=94.31 E-value=0.057 Score=44.46 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=33.5
Q ss_pred HhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeC
Q psy13373 149 KLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 149 kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
.+..++++|+|+|..|..++..|...|..++.++|.
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 377899999999999999999999998889999988
No 191
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.27 E-value=0.11 Score=53.70 Aligned_cols=75 Identities=20% Similarity=0.241 Sum_probs=51.5
Q ss_pred cCcEEEEcCCcchHHHHHHhHHcCCc-eEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCc---EEEEe
Q psy13373 152 NASVLIVGCGGTGSPCIQYLAASGVG-TLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNT---IVHAY 227 (525)
Q Consensus 152 ~~~VlViG~GglGs~ia~~La~~GVg-~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v---~v~~~ 227 (525)
..||.|||+|.+|+.+|..|+..|.. +|.|+|... .|++..+.-|....|.. +|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~-------------------~~~~g~a~Dl~~~~~~~~~~~v~~~ 63 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE-------------------DKLKGEAMDLQHGSAFLKNPKIEAD 63 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc-------------------cHHHHHHHHHHHhhccCCCCEEEEC
Confidence 46999999999999999999999874 799987532 34555555566555433 22211
Q ss_pred eecCCcchHhHhhccCCeEeecCCC
Q psy13373 228 QTLLDTSNACDIIRRYDVVVDACDN 252 (525)
Q Consensus 228 ~~~i~~~~~~~~~~~~dvVi~~~d~ 252 (525)
. ..+.++++|+||.+...
T Consensus 64 ----~---dy~~~~~adivvitaG~ 81 (312)
T cd05293 64 ----K---DYSVTANSKVVIVTAGA 81 (312)
T ss_pred ----C---CHHHhCCCCEEEECCCC
Confidence 1 12348999999876553
No 192
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.26 E-value=0.14 Score=51.91 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=29.3
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
.+|.|||+|.+|+.+|..|+..|. +++++|.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 589999999999999999999996 599998653
No 193
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.25 E-value=0.18 Score=51.60 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=28.9
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
++|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence 479999999999999999999996 688887643
No 194
>PRK07340 ornithine cyclodeaminase; Validated
Probab=94.24 E-value=0.15 Score=52.30 Aligned_cols=76 Identities=16% Similarity=0.159 Sum_probs=56.3
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHH-cCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEee
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAA-SGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQ 228 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~-~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 228 (525)
...++|+|+|+|+.|...++.|.. .|+.++.++|.+ ..|++.+++.+.+.. ..+.
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~a~~~~~~~--~~~~--- 178 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT-------------------AASAAAFCAHARALG--PTAE--- 178 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcC--CeeE---
Confidence 456899999999999999999975 688899987553 356777777776542 2222
Q ss_pred ecCCcchHhHhhccCCeEeecCCCH
Q psy13373 229 TLLDTSNACDIIRRYDVVVDACDNA 253 (525)
Q Consensus 229 ~~i~~~~~~~~~~~~dvVi~~~d~~ 253 (525)
..+..+.+.++|+||.||.+.
T Consensus 179 ----~~~~~~av~~aDiVitaT~s~ 199 (304)
T PRK07340 179 ----PLDGEAIPEAVDLVVTATTSR 199 (304)
T ss_pred ----ECCHHHHhhcCCEEEEccCCC
Confidence 123456788999999998764
No 195
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.24 E-value=0.3 Score=52.66 Aligned_cols=96 Identities=20% Similarity=0.173 Sum_probs=61.8
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeee
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQT 229 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~ 229 (525)
+...+|+|+|+|.+|..+++.|...|.. ++++|.|. .+.+ .+++..+++.+ +..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~-v~vid~~~-------------------~~~~----~~~~~~~~~~~--i~g 282 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYS-VKLIERDP-------------------ERAE----ELAEELPNTLV--LHG 282 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCe-EEEEECCH-------------------HHHH----HHHHHCCCCeE--EEC
Confidence 4568999999999999999999998874 78887654 1111 22222233332 333
Q ss_pred cCCcchHh--HhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEE
Q psy13373 230 LLDTSNAC--DIIRRYDVVVDACDNAPTRYLLNDACLREGRPLV 271 (525)
Q Consensus 230 ~i~~~~~~--~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i 271 (525)
..+..... ..+.++|.||.++++......+...|++.+.+.+
T Consensus 283 d~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~i 326 (453)
T PRK09496 283 DGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAKKV 326 (453)
T ss_pred CCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCCeE
Confidence 33332222 2357899999988877666666666777665433
No 196
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.19 E-value=0.097 Score=55.28 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=31.7
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
+..++|+|+|+|.+|..+++.|.+.|+ +++++|.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 567889999999999999999999999 59998874
No 197
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=94.17 E-value=0.062 Score=54.70 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=31.7
Q ss_pred HhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeC
Q psy13373 149 KLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 149 kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
.|.+++|+|+|+|++|..+|+.|...|. +++++|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R 182 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR 182 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence 4678999999999999999999999997 7888765
No 198
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.17 E-value=0.36 Score=48.93 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=28.0
Q ss_pred cEEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
+|+|+|+|++|+.++..|+.+|. +++++|.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 69999999999999999999994 69998864
No 199
>PRK06932 glycerate dehydrogenase; Provisional
Probab=94.13 E-value=0.1 Score=53.85 Aligned_cols=87 Identities=16% Similarity=0.249 Sum_probs=57.4
Q ss_pred HHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEe
Q psy13373 148 EKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAY 227 (525)
Q Consensus 148 ~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~ 227 (525)
..|++++|.|||+|.+|.++|+.|...|+. +..+|... ..+. ..
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~-V~~~~~~~-------------~~~~-----------------~~----- 186 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMK-VLYAEHKG-------------ASVC-----------------RE----- 186 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECCCc-------------cccc-----------------cc-----
Confidence 469999999999999999999999988885 55554310 0000 00
Q ss_pred eecCCcchHhHhhccCCeEeecCC-CHHHHHHHHHHhH---hcCCcEEEec
Q psy13373 228 QTLLDTSNACDIIRRYDVVVDACD-NAPTRYLLNDACL---REGRPLVSAS 274 (525)
Q Consensus 228 ~~~i~~~~~~~~~~~~dvVi~~~d-~~~~r~~l~~~~~---~~~~p~i~~~ 274 (525)
......++++.+|+|+.+.- +.+++.++++... +.+.-+|+.+
T Consensus 187 ----~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~a 233 (314)
T PRK06932 187 ----GYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTG 233 (314)
T ss_pred ----ccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECC
Confidence 01135788899999876554 5667777776543 3344466653
No 200
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.12 E-value=0.14 Score=52.91 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=29.4
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
++|.|||+|.+|+.+|..++.+|.. ++++|.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~-V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLD-VVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCH
Confidence 5799999999999999999999965 88888754
No 201
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=94.11 E-value=0.31 Score=47.38 Aligned_cols=85 Identities=18% Similarity=0.159 Sum_probs=51.2
Q ss_pred cEEEEc-CCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCC--CcEEEEeeec
Q psy13373 154 SVLIVG-CGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINR--NTIVHAYQTL 230 (525)
Q Consensus 154 ~VlViG-~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp--~v~v~~~~~~ 230 (525)
+|.||| +|.+|+.++..|+..| .++++++.+. .|++.+++....... ...+...
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~~-------------------~~~~~l~~~~~~~~~~~g~~~~~~--- 58 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRDL-------------------EKAEEAAAKALEELGHGGSDIKVT--- 58 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcCH-------------------HHHHHHHHHHHhhccccCCCceEE---
Confidence 699997 8999999999999999 5677764421 223333332211111 1111111
Q ss_pred CCcchHhHhhccCCeEeecCCCHHHHHHHHHHh
Q psy13373 231 LDTSNACDIIRRYDVVVDACDNAPTRYLLNDAC 263 (525)
Q Consensus 231 i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~ 263 (525)
..+..+.+..+|+||.|+-.......+.++.
T Consensus 59 --~~~~~ea~~~aDvVilavp~~~~~~~l~~l~ 89 (219)
T TIGR01915 59 --GADNAEAAKRADVVILAVPWDHVLKTLESLR 89 (219)
T ss_pred --EeChHHHHhcCCEEEEECCHHHHHHHHHHHH
Confidence 0112456788999999988776666665553
No 202
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=94.11 E-value=0.29 Score=52.20 Aligned_cols=36 Identities=17% Similarity=0.263 Sum_probs=32.1
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
+.+++|+|+|+|.+|..+|+.+...|.. ++++|.|.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~-ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGAR-VIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCE-EEEEeCCh
Confidence 6789999999999999999999999985 88887654
No 203
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.10 E-value=0.28 Score=49.06 Aligned_cols=89 Identities=22% Similarity=0.179 Sum_probs=53.9
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCC--ceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeec
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGV--GTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTL 230 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GV--g~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 230 (525)
.+|.|||+|.+|+.++..|...|. ..+.++|.+. .+++ .+.+.. .+.+
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~-------------------~~~~----~~~~~~-g~~~------ 52 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP-------------------EKRA----ALAEEY-GVRA------ 52 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH-------------------HHHH----HHHHhc-CCee------
Confidence 479999999999999999999984 3566654321 1122 222211 1211
Q ss_pred CCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEe
Q psy13373 231 LDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSA 273 (525)
Q Consensus 231 i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~ 273 (525)
.. +..+.+.++|+||.|+-....+..+.++....+..+|+.
T Consensus 53 -~~-~~~~~~~~advVil~v~~~~~~~v~~~l~~~~~~~vvs~ 93 (267)
T PRK11880 53 -AT-DNQEAAQEADVVVLAVKPQVMEEVLSELKGQLDKLVVSI 93 (267)
T ss_pred -cC-ChHHHHhcCCEEEEEcCHHHHHHHHHHHHhhcCCEEEEe
Confidence 11 234556789999999877666666666543224434443
No 204
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.10 E-value=0.26 Score=49.82 Aligned_cols=92 Identities=10% Similarity=0.101 Sum_probs=55.0
Q ss_pred hcCcEEEEcCCcchHHHHHHhHHcCC---ceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEe
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAASGV---GTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAY 227 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~~GV---g~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~ 227 (525)
+..+|.+||+|.+|..+++.|...|+ .+++++|. .. ..|++.++. +. .+++.
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r----------~~--------~~~~~~l~~---~~--g~~~~-- 56 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNR----------SN--------ETRLQELHQ---KY--GVKGT-- 56 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECC----------CC--------HHHHHHHHH---hc--CceEe--
Confidence 44689999999999999999999983 23443321 10 011222211 11 22211
Q ss_pred eecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhH--hcCCcEEEe
Q psy13373 228 QTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACL--REGRPLVSA 273 (525)
Q Consensus 228 ~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~--~~~~p~i~~ 273 (525)
. +..+..+++|+||.|+-+......+..+.. ..+..+|+.
T Consensus 57 -----~-~~~e~~~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs~ 98 (279)
T PRK07679 57 -----H-NKKELLTDANILFLAMKPKDVAEALIPFKEYIHNNQLIISL 98 (279)
T ss_pred -----C-CHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 1 124556789999999988877777766542 234445553
No 205
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.06 E-value=0.15 Score=51.81 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=29.9
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
++|.|||+|.+|+.+|..|+..|. +++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999998 699998754
No 206
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=94.02 E-value=0.32 Score=53.27 Aligned_cols=121 Identities=9% Similarity=0.138 Sum_probs=71.4
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCc---HHHHHHHHHHhh-CCCcEEEEee
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQP---KVTSAKRFISAI-NRNTIVHAYQ 228 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~---Ka~~~~~~l~~l-np~v~v~~~~ 228 (525)
++|.+||+|..|+.+|.||+..|. +++++|.+.=....+... ...-|.. -+...++.++.+ .|++-+..++
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~ 81 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER----AKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVK 81 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHh----hhhcCCcccccCCCHHHHHhcCCCCCEEEEECC
Confidence 479999999999999999999997 588887643211111110 0000211 122233333332 2555444433
Q ss_pred ecCCcch----HhHhhccCCeEeecCCC-HHHHHHHHHHhHhcCCcEEEecccCc
Q psy13373 229 TLLDTSN----ACDIIRRYDVVVDACDN-APTRYLLNDACLREGRPLVSASALGL 278 (525)
Q Consensus 229 ~~i~~~~----~~~~~~~~dvVi~~~d~-~~~r~~l~~~~~~~~~p~i~~~~~g~ 278 (525)
..-.-+. ....+..=|+|||++.. +.....+.+.+.+.|+.+|.+.+.|.
T Consensus 82 ~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG 136 (493)
T PLN02350 82 AGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGG 136 (493)
T ss_pred CcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCC
Confidence 2211111 12334566899998776 34555678888899999999987764
No 207
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=93.97 E-value=0.21 Score=50.21 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=29.9
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeC
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
.++++|+|+|+||+|..++..|+..|. +++++|.
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R 148 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADC-NVIIANR 148 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 346789999999999999999999996 8888764
No 208
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.93 E-value=0.093 Score=53.76 Aligned_cols=32 Identities=28% Similarity=0.477 Sum_probs=29.6
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeC
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
.||.|||+|.+|+.+|..|+..|.+++.|+|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 58999999999999999999998669999987
No 209
>PRK06197 short chain dehydrogenase; Provisional
Probab=93.85 E-value=0.2 Score=50.92 Aligned_cols=42 Identities=21% Similarity=0.171 Sum_probs=32.2
Q ss_pred cCHHHHHHhhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 142 VGVMGQEKLLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 142 ~G~~~q~kL~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
|+......+++++|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 6 ~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r 48 (306)
T PRK06197 6 WTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR 48 (306)
T ss_pred CCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 3333345578889999985 7899999999999997 5666654
No 210
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.84 E-value=0.21 Score=54.44 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=31.1
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
+.+++|+|+|+|++|.++|..|...|. +++++|..
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~ 48 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDG 48 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 567799999999999999999999997 49998854
No 211
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=93.82 E-value=0.16 Score=51.89 Aligned_cols=116 Identities=13% Similarity=0.163 Sum_probs=67.6
Q ss_pred cEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhh-CCCcEEEEeeec-C
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAI-NRNTIVHAYQTL-L 231 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~l-np~v~v~~~~~~-i 231 (525)
+|.|||+|.+|+.++.+|+..|. +++++|.+.-....+. +.|-.-+....+.+... ++++-+...+.. .
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~--------~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~ 72 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALA--------EEGATGADSLEELVAKLPAPRVVWLMVPAGEI 72 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHH--------HCCCeecCCHHHHHhhcCCCCEEEEEecCCcH
Confidence 69999999999999999999996 5888887642111110 11221122222333332 345555554432 1
Q ss_pred Ccc---hHhHhhccCCeEeecCCC-HHHHHHHHHHhHhcCCcEEEecccCc
Q psy13373 232 DTS---NACDIIRRYDVVVDACDN-APTRYLLNDACLREGRPLVSASALGL 278 (525)
Q Consensus 232 ~~~---~~~~~~~~~dvVi~~~d~-~~~r~~l~~~~~~~~~p~i~~~~~g~ 278 (525)
..+ .....++.-++||+++.. +.....+.+.+.+.|+-++++.+.|.
T Consensus 73 ~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~ 123 (301)
T PRK09599 73 TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGG 123 (301)
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcC
Confidence 111 112223445788887544 33444567788888999998876654
No 212
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=93.80 E-value=0.26 Score=49.10 Aligned_cols=105 Identities=16% Similarity=0.191 Sum_probs=68.1
Q ss_pred HHhhcCcEEEEcCCcchHHHHHHhHHcCCc----------eEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHh
Q psy13373 148 EKLLNASVLIVGCGGTGSPCIQYLAASGVG----------TLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISA 217 (525)
Q Consensus 148 ~kL~~~~VlViG~GglGs~ia~~La~~GVg----------~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~ 217 (525)
++|++.||+++|+|+.|..+++.|..+|++ +|.++|.+=+=..+- .+.-..|... ++ -
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r--------~~l~~~~~~~-~~---~ 88 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNR--------KETCPNEYHL-AR---F 88 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCC--------CccCHHHHHH-HH---H
Confidence 578999999999999999999999999997 999999764222111 1121222221 11 1
Q ss_pred hCCCcEEEEeeecCCcchHhHhhc--cCCeEeecCC--CHHHHHHHHHHhHhcCCcEEEe
Q psy13373 218 INRNTIVHAYQTLLDTSNACDIIR--RYDVVVDACD--NAPTRYLLNDACLREGRPLVSA 273 (525)
Q Consensus 218 lnp~v~v~~~~~~i~~~~~~~~~~--~~dvVi~~~d--~~~~r~~l~~~~~~~~~p~i~~ 273 (525)
.++.- ...+..+.++ +.|++|-.+. ..-++..|..++.....|+|..
T Consensus 89 ~~~~~---------~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFa 139 (254)
T cd00762 89 ANPER---------ESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFA 139 (254)
T ss_pred cCccc---------ccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEE
Confidence 12110 1124667777 8899986544 2234566777777777888876
No 213
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=93.79 E-value=0.36 Score=50.18 Aligned_cols=89 Identities=21% Similarity=0.253 Sum_probs=58.8
Q ss_pred HHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEe
Q psy13373 148 EKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAY 227 (525)
Q Consensus 148 ~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~ 227 (525)
..|++++|.|||+|.+|..+|+.|...|. ++..+|...- +. .. ...
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~-------------------~~---~~-------~~~---- 187 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPN-------------------KD---LD-------FLT---- 187 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChh-------------------Hh---hh-------hhh----
Confidence 46899999999999999999999999987 5778775420 00 00 000
Q ss_pred eecCCcchHhHhhccCCeEeecCCCHH-HHHHHHHHhH---hcCCcEEEec
Q psy13373 228 QTLLDTSNACDIIRRYDVVVDACDNAP-TRYLLNDACL---REGRPLVSAS 274 (525)
Q Consensus 228 ~~~i~~~~~~~~~~~~dvVi~~~d~~~-~r~~l~~~~~---~~~~p~i~~~ 274 (525)
.. .+..++++++|+|+.+....+ ++..+++... +.+..+|+++
T Consensus 188 ---~~-~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~a 234 (330)
T PRK12480 188 ---YK-DSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAA 234 (330)
T ss_pred ---cc-CCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcC
Confidence 01 135678899999987776544 5556654432 3355566653
No 214
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=93.73 E-value=0.039 Score=51.98 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=33.3
Q ss_pred HHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 146 GQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 146 ~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
....|.+++|.|+|+|.+|.++|+.|...|. ++..+|+..
T Consensus 30 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~ 69 (178)
T PF02826_consen 30 PGRELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSP 69 (178)
T ss_dssp TBS-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSC
T ss_pred CccccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccC
Confidence 3467999999999999999999999999999 688877644
No 215
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=93.69 E-value=0.18 Score=51.60 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=31.9
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
+.+++|+|+|.|++|..++..|.+.|. +++++|..
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~ 184 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK 184 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 578999999999999999999999998 89988764
No 216
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=93.69 E-value=0.17 Score=55.18 Aligned_cols=119 Identities=13% Similarity=0.171 Sum_probs=69.3
Q ss_pred cEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCC--CcHHHHHHHHHHhh-CCCcEEEEeeec
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIG--QPKVTSAKRFISAI-NRNTIVHAYQTL 230 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG--~~Ka~~~~~~l~~l-np~v~v~~~~~~ 230 (525)
.|.|||+|..|..+|.+|+..|. +++++|.+.-....+.... ..| -.-+...++....+ .|++-+...+..
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~-----~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~ 74 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEH-----AKGKKIVGAYSIEEFVQSLERPRKIMLMVKAG 74 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhc-----cCCCCceecCCHHHHHhhcCCCCEEEEECCCc
Confidence 48899999999999999999997 6888887553333222110 001 00111223333333 345444443331
Q ss_pred -CCcc---hHhHhhccCCeEeecCCC-HHHHHHHHHHhHhcCCcEEEecccCc
Q psy13373 231 -LDTS---NACDIIRRYDVVVDACDN-APTRYLLNDACLREGRPLVSASALGL 278 (525)
Q Consensus 231 -i~~~---~~~~~~~~~dvVi~~~d~-~~~r~~l~~~~~~~~~p~i~~~~~g~ 278 (525)
...+ .....+..=|+|||++.. +.......+.+.+.++.+|.+.+.|.
T Consensus 75 ~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG 127 (467)
T TIGR00873 75 APVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGG 127 (467)
T ss_pred HHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCC
Confidence 1111 122334556899998764 34433445667888999999988764
No 217
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.68 E-value=0.23 Score=50.36 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=29.3
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
++|.|||+|.+|+.+|.+|+..|. +++++|.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence 479999999999999999999996 588888764
No 218
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=93.67 E-value=0.77 Score=42.56 Aligned_cols=93 Identities=19% Similarity=0.202 Sum_probs=58.2
Q ss_pred EEEEcC-CcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecCCc
Q psy13373 155 VLIVGC-GGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDT 233 (525)
Q Consensus 155 VlViG~-GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~ 233 (525)
|+|+|+ |.+|..+++.|...| -+++.+ .|. ..|.+. .+.+++. ...+.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~----------~R~---------~~~~~~--------~~~~~~~--~~d~~d 50 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTAL----------VRS---------PSKAED--------SPGVEII--QGDLFD 50 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEE----------ESS---------GGGHHH--------CTTEEEE--ESCTTC
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEE----------ecC---------chhccc--------ccccccc--eeeehh
Confidence 789997 779999999999999 556653 121 112222 4555544 433333
Q ss_pred -chHhHhhccCCeEeecCCC----HHHHHHHHHHhHhcCCcE-EEecccC
Q psy13373 234 -SNACDIIRRYDVVVDACDN----APTRYLLNDACLREGRPL-VSASALG 277 (525)
Q Consensus 234 -~~~~~~~~~~dvVi~~~d~----~~~r~~l~~~~~~~~~p~-i~~~~~g 277 (525)
+...+.++++|.||.+... ...-..+-+.|.+.+++- |..+..+
T Consensus 51 ~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~ 100 (183)
T PF13460_consen 51 PDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSAG 100 (183)
T ss_dssp HHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred hhhhhhhhhhcchhhhhhhhhcccccccccccccccccccccceeeeccc
Confidence 3456778899999988753 222334666777777764 3334433
No 219
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=93.64 E-value=0.19 Score=51.39 Aligned_cols=116 Identities=17% Similarity=0.172 Sum_probs=61.0
Q ss_pred cEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhh-CCCcEEEEeeec-C
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAI-NRNTIVHAYQTL-L 231 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~l-np~v~v~~~~~~-i 231 (525)
+|.+||+|.+|..++++|+..|. +++++|.+.-...-+ .+.|-..+....+.+++. ++++-+...+.. .
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~~~~~~~--------~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~ 72 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQEAVDVA--------GKLGITARHSLEELVSKLEAPRTIWVMVPAGEV 72 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHH--------HHCCCeecCCHHHHHHhCCCCCEEEEEecCchH
Confidence 69999999999999999999996 577887653111111 011222222222222221 134444443322 1
Q ss_pred CcchHhHh---hccCCeEeecCCC-HHHHHHHHHHhHhcCCcEEEecccCc
Q psy13373 232 DTSNACDI---IRRYDVVVDACDN-APTRYLLNDACLREGRPLVSASALGL 278 (525)
Q Consensus 232 ~~~~~~~~---~~~~dvVi~~~d~-~~~r~~l~~~~~~~~~p~i~~~~~g~ 278 (525)
..+-...+ ++.=.+||+++.. +.....+.+.+...++.++++.+.|.
T Consensus 73 ~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~ 123 (299)
T PRK12490 73 TESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGG 123 (299)
T ss_pred HHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCC
Confidence 11111122 2233577776433 33444456666677787887766553
No 220
>PRK08291 ectoine utilization protein EutC; Validated
Probab=93.64 E-value=0.3 Score=50.71 Aligned_cols=75 Identities=12% Similarity=0.145 Sum_probs=53.6
Q ss_pred cCcEEEEcCCcchHHHHHHhHH-cCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeec
Q psy13373 152 NASVLIVGCGGTGSPCIQYLAA-SGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTL 230 (525)
Q Consensus 152 ~~~VlViG~GglGs~ia~~La~-~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 230 (525)
.++|+|+|+|+.|...+..|.. .|+.++++++.+. .|++.+++.+++.. .+++...
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~-------------------~~a~~l~~~~~~~~-g~~v~~~--- 188 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDA-------------------AKAEAYAADLRAEL-GIPVTVA--- 188 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCH-------------------HHHHHHHHHHhhcc-CceEEEe---
Confidence 4689999999999999999985 5889999974422 36677777665432 2333322
Q ss_pred CCcchHhHhhccCCeEeecCCC
Q psy13373 231 LDTSNACDIIRRYDVVVDACDN 252 (525)
Q Consensus 231 i~~~~~~~~~~~~dvVi~~~d~ 252 (525)
++..+.+.++|+||.|+..
T Consensus 189 ---~d~~~al~~aDiVi~aT~s 207 (330)
T PRK08291 189 ---RDVHEAVAGADIIVTTTPS 207 (330)
T ss_pred ---CCHHHHHccCCEEEEeeCC
Confidence 1245677889999998765
No 221
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=93.63 E-value=0.49 Score=48.47 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=29.5
Q ss_pred cCcEEEEcCCcchHHHHHHhHHcCC-ceEEEEeCC
Q psy13373 152 NASVLIVGCGGTGSPCIQYLAASGV-GTLGLADYD 185 (525)
Q Consensus 152 ~~~VlViG~GglGs~ia~~La~~GV-g~i~lvD~d 185 (525)
..+|+|||+|.+|..++..|...|. .+++++|.+
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~ 40 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS 40 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 3689999999999999999999997 478888764
No 222
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.62 E-value=0.18 Score=51.33 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=29.4
Q ss_pred cCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 152 NASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 152 ~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
-++|.|||+|..|+.+|.+|+..|. +++++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 4689999999999999999999997 68888864
No 223
>PLN02494 adenosylhomocysteinase
Probab=93.62 E-value=0.12 Score=55.80 Aligned_cols=36 Identities=22% Similarity=0.470 Sum_probs=32.2
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
+.+++|+|+|+|.+|..+|+.+...|+ ++.++|.|.
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp 287 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDP 287 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 688999999999999999999999999 588887654
No 224
>PRK09242 tropinone reductase; Provisional
Probab=93.61 E-value=0.42 Score=47.02 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=45.5
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEee
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQ 228 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 228 (525)
|++++++|.|+ |++|.++++.|+..|. ++.+++.+. .+.+.+.+.+...+|..++..+.
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~~ 66 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDA-------------------DALAQARDELAEEFPEREVHGLA 66 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCCCCeEEEEE
Confidence 67889999985 6899999999999997 477765421 23445566666666666666666
Q ss_pred ecCCc
Q psy13373 229 TLLDT 233 (525)
Q Consensus 229 ~~i~~ 233 (525)
.++.+
T Consensus 67 ~Dl~~ 71 (257)
T PRK09242 67 ADVSD 71 (257)
T ss_pred CCCCC
Confidence 55544
No 225
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=93.57 E-value=0.16 Score=55.39 Aligned_cols=121 Identities=8% Similarity=0.141 Sum_probs=70.8
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCc--HHHHHHHHHHhh-CCCcEEEEeee
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQP--KVTSAKRFISAI-NRNTIVHAYQT 229 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~--Ka~~~~~~l~~l-np~v~v~~~~~ 229 (525)
++|.|||+|..|+.+|.+|+..|. +++++|.+.=....+..... .-|.. -+...++.+..+ .|++-+.....
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~~~----~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~ 76 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKKAK----EGNTRVKGYHTLEELVNSLKKPRKVILLIKA 76 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhhh----hcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence 579999999999999999999998 69998875433222211000 00100 122233444433 34443333221
Q ss_pred -cCCcc---hHhHhhccCCeEeecCCCH-HHHHHHHHHhHhcCCcEEEecccCc
Q psy13373 230 -LLDTS---NACDIIRRYDVVVDACDNA-PTRYLLNDACLREGRPLVSASALGL 278 (525)
Q Consensus 230 -~i~~~---~~~~~~~~~dvVi~~~d~~-~~r~~l~~~~~~~~~p~i~~~~~g~ 278 (525)
....+ .....+..-|+|||++... .......+.+.++|+-++.+.+.|.
T Consensus 77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG 130 (470)
T PTZ00142 77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGG 130 (470)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCC
Confidence 11111 1223445668999987764 3334455777888999999988764
No 226
>PLN02602 lactate dehydrogenase
Probab=93.48 E-value=0.27 Score=51.45 Aligned_cols=74 Identities=18% Similarity=0.211 Sum_probs=50.9
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCC-ceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCC---cEEEEee
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGV-GTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRN---TIVHAYQ 228 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GV-g~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~---v~v~~~~ 228 (525)
.||.|||+|.+|+.+|..|+..|+ .+|.|+|-+ +.|++..+--|....+. ++|...
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~-------------------~~~~~g~a~DL~~~~~~~~~~~i~~~- 97 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVN-------------------PDKLRGEMLDLQHAAAFLPRTKILAS- 97 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC-------------------CchhhHHHHHHHhhhhcCCCCEEEeC-
Confidence 699999999999999999999988 579998752 23444455555554432 223221
Q ss_pred ecCCcchHhHhhccCCeEeecCCC
Q psy13373 229 TLLDTSNACDIIRRYDVVVDACDN 252 (525)
Q Consensus 229 ~~i~~~~~~~~~~~~dvVi~~~d~ 252 (525)
. ..+.++++|+||.+...
T Consensus 98 ---~---dy~~~~daDiVVitAG~ 115 (350)
T PLN02602 98 ---T---DYAVTAGSDLCIVTAGA 115 (350)
T ss_pred ---C---CHHHhCCCCEEEECCCC
Confidence 1 13458999999987554
No 227
>PRK07062 short chain dehydrogenase; Provisional
Probab=93.48 E-value=0.47 Score=46.92 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=43.6
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEee
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQ 228 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 228 (525)
|+++.++|.|+ ||+|.++++.|+..|.. +.+++.+. .|.+.+.+.+.+..+..++..+.
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 65 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGRDE-------------------ERLASAEARLREKFPGARLLAAR 65 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEE
Confidence 67789999986 57999999999999985 66765432 23444555666655555555555
Q ss_pred ecCCc
Q psy13373 229 TLLDT 233 (525)
Q Consensus 229 ~~i~~ 233 (525)
.++++
T Consensus 66 ~D~~~ 70 (265)
T PRK07062 66 CDVLD 70 (265)
T ss_pred ecCCC
Confidence 44443
No 228
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.47 E-value=0.043 Score=55.85 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=29.7
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
++|.|||+|..|+.+|.+|+++|. .++++|.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 489999999999999999999997 599998654
No 229
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.43 E-value=0.5 Score=50.91 Aligned_cols=93 Identities=16% Similarity=0.228 Sum_probs=59.2
Q ss_pred cEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecCCc
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDT 233 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~ 233 (525)
+|+|+|+|.+|..+++.|...|. .++++|.+. .+++. +++ . ..+..+....+.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~-------------------~~~~~----~~~-~--~~~~~~~gd~~~ 54 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTDE-------------------ERLRR----LQD-R--LDVRTVVGNGSS 54 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-cEEEEECCH-------------------HHHHH----HHh-h--cCEEEEEeCCCC
Confidence 79999999999999999999887 477876643 11222 222 1 123333333333
Q ss_pred ch-HhHh-hccCCeEeecCCCHHHHHHHHHHhHhc-CCcEEEe
Q psy13373 234 SN-ACDI-IRRYDVVVDACDNAPTRYLLNDACLRE-GRPLVSA 273 (525)
Q Consensus 234 ~~-~~~~-~~~~dvVi~~~d~~~~r~~l~~~~~~~-~~p~i~~ 273 (525)
.. ..+. +.++|.||.++++......+...++.. +.+.+.+
T Consensus 55 ~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 55 PDVLREAGAEDADLLIAVTDSDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred HHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHHhcCCCeEEE
Confidence 32 2333 678999999988877766666677665 5544443
No 230
>PRK05854 short chain dehydrogenase; Provisional
Probab=93.38 E-value=0.41 Score=49.11 Aligned_cols=64 Identities=22% Similarity=0.203 Sum_probs=42.7
Q ss_pred hhcCcEEEEc-CCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEee
Q psy13373 150 LLNASVLIVG-CGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQ 228 (525)
Q Consensus 150 L~~~~VlViG-~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 228 (525)
|++++++|.| .+|+|.++++.|++.|. ++.+++.+. .|.+.+.+.|.+.++..++..+.
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~v~~~~ 71 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNR-------------------AKGEAAVAAIRTAVPDAKLSLRA 71 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHHhCCCCceEEEE
Confidence 6778899998 56699999999999996 566654321 34455555565555555555555
Q ss_pred ecCCc
Q psy13373 229 TLLDT 233 (525)
Q Consensus 229 ~~i~~ 233 (525)
.++.+
T Consensus 72 ~Dl~d 76 (313)
T PRK05854 72 LDLSS 76 (313)
T ss_pred ecCCC
Confidence 44443
No 231
>PRK07680 late competence protein ComER; Validated
Probab=93.38 E-value=0.58 Score=47.07 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=49.9
Q ss_pred cEEEEcCCcchHHHHHHhHHcCC---ceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeec
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGV---GTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTL 230 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GV---g~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 230 (525)
+|.|||+|.+|+.++..|...|. ..++++|.+. .++ +.+.+..+.+.+.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~-------------------~~~----~~~~~~~~g~~~~----- 53 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTP-------------------AKA----YHIKERYPGIHVA----- 53 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCH-------------------HHH----HHHHHHcCCeEEE-----
Confidence 59999999999999999999985 4567664432 111 1222222222211
Q ss_pred CCcchHhHhhccCCeEeecCCCHHHHHHHHHHh
Q psy13373 231 LDTSNACDIIRRYDVVVDACDNAPTRYLLNDAC 263 (525)
Q Consensus 231 i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~ 263 (525)
. +..+.+.++|+||.|+-.......+.++.
T Consensus 54 --~-~~~~~~~~aDiVilav~p~~~~~vl~~l~ 83 (273)
T PRK07680 54 --K-TIEEVISQSDLIFICVKPLDIYPLLQKLA 83 (273)
T ss_pred --C-CHHHHHHhCCEEEEecCHHHHHHHHHHHH
Confidence 1 23455788999999986655555565543
No 232
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=93.35 E-value=0.56 Score=47.13 Aligned_cols=88 Identities=17% Similarity=0.243 Sum_probs=52.3
Q ss_pred cEEEEcCCcchHHHHHHhHHcC--CceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecC
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASG--VGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLL 231 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~G--Vg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i 231 (525)
+|.|||+|.+|..+++.|...+ +.-+.++|.+. .|++.+++ +.. + ..+
T Consensus 3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~-------------------~~a~~~a~---~~~--~--~~~---- 52 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRNL-------------------EKAENLAS---KTG--A--KAC---- 52 (265)
T ss_pred EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCH-------------------HHHHHHHH---hcC--C--eeE----
Confidence 7999999999999999998764 33344554431 22332222 111 1 111
Q ss_pred CcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEec
Q psy13373 232 DTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSAS 274 (525)
Q Consensus 232 ~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~ 274 (525)
.+..+++.++|+|+.|+.... ...+...+.+.|+.++..+
T Consensus 53 --~~~~ell~~~DvVvi~a~~~~-~~~~~~~al~~Gk~Vvv~s 92 (265)
T PRK13304 53 --LSIDELVEDVDLVVECASVNA-VEEVVPKSLENGKDVIIMS 92 (265)
T ss_pred --CCHHHHhcCCCEEEEcCChHH-HHHHHHHHHHcCCCEEEEc
Confidence 123455678999998875433 3334444556777776643
No 233
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.34 E-value=0.27 Score=50.88 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=28.0
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
.+|.|||+|.+|+.++..|++.|. +++++|.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 479999999999999999999985 48887764
No 234
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=93.31 E-value=0.11 Score=53.41 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=31.4
Q ss_pred HHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeC
Q psy13373 148 EKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 148 ~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
..|.+++|.|||+|.+|.++|+.+...|. ++..+|+
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~ 176 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYST 176 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECC
Confidence 46999999999999999999999988787 4666665
No 235
>KOG0069|consensus
Probab=93.29 E-value=0.22 Score=51.45 Aligned_cols=93 Identities=22% Similarity=0.260 Sum_probs=58.5
Q ss_pred HHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEE
Q psy13373 147 QEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHA 226 (525)
Q Consensus 147 q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~ 226 (525)
-..+.+++|+|+|+|.+|.++|+.|.-.| ..|.-. . |+.. . -+...+ .+..
T Consensus 157 g~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~-~---------r~~~-------~--~~~~~~----~~~~----- 207 (336)
T KOG0069|consen 157 GYDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILYH-S---------RTQL-------P--PEEAYE----YYAE----- 207 (336)
T ss_pred cccccCCEEEEecCcHHHHHHHHhhhhcc-ceeeee-c---------ccCC-------c--hhhHHH----hccc-----
Confidence 35789999999999999999999999966 434331 1 1110 0 011111 1111
Q ss_pred eeecCCcchHhHhhccCCeEe-ecCCCHHHHHHHHHHhH---hcCCcEEEec
Q psy13373 227 YQTLLDTSNACDIIRRYDVVV-DACDNAPTRYLLNDACL---REGRPLVSAS 274 (525)
Q Consensus 227 ~~~~i~~~~~~~~~~~~dvVi-~~~d~~~~r~~l~~~~~---~~~~p~i~~~ 274 (525)
.....+++.++|+|| +|-.+..++.++|.... +.+.-+|+.+
T Consensus 208 ------~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~a 253 (336)
T KOG0069|consen 208 ------FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTA 253 (336)
T ss_pred ------ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEecc
Confidence 223567889999765 77778888988887642 2344455553
No 236
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=93.27 E-value=0.44 Score=49.04 Aligned_cols=86 Identities=16% Similarity=0.144 Sum_probs=53.3
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeee---
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQT--- 229 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~--- 229 (525)
.||+|+|+|++|+.++..|+++| ..++++-.+. + .+++++- ...+.....
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~--------------------~----~~~l~~~--GL~i~~~~~~~~ 53 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSR--------------------R----LEALKKK--GLRIEDEGGNFT 53 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHH--------------------H----HHHHHhC--CeEEecCCCccc
Confidence 47999999999999999999999 7777642211 1 2222222 233332222
Q ss_pred -cCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHh
Q psy13373 230 -LLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLR 265 (525)
Q Consensus 230 -~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~ 265 (525)
........+....+|+||.++-+......+..+...
T Consensus 54 ~~~~~~~~~~~~~~~Dlviv~vKa~q~~~al~~l~~~ 90 (307)
T COG1893 54 TPVVAATDAEALGPADLVIVTVKAYQLEEALPSLAPL 90 (307)
T ss_pred cccccccChhhcCCCCEEEEEeccccHHHHHHHhhhc
Confidence 011111234456899999988888777776666543
No 237
>PLN02427 UDP-apiose/xylose synthase
Probab=93.24 E-value=0.47 Score=50.03 Aligned_cols=113 Identities=11% Similarity=0.130 Sum_probs=63.5
Q ss_pred HHhhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEE
Q psy13373 148 EKLLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHA 226 (525)
Q Consensus 148 ~kL~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~ 226 (525)
++++..+|+|.|+ |-+|+.+++.|+..|--++..+|... +.+. + +.. .+. ....+ .++.
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~---~~~~-~-l~~---~~~----------~~~~~--~~~~ 69 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYN---DKIK-H-LLE---PDT----------VPWSG--RIQF 69 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCc---hhhh-h-hhc---ccc----------ccCCC--CeEE
Confidence 4567789999995 66999999999998533677776431 0000 0 000 000 00011 2444
Q ss_pred eeecCCcc-hHhHhhccCCeEeecCCC--H-------HH--------HHHHHHHhHhcCCcEEEecccCccc
Q psy13373 227 YQTLLDTS-NACDIIRRYDVVVDACDN--A-------PT--------RYLLNDACLREGRPLVSASALGLEG 280 (525)
Q Consensus 227 ~~~~i~~~-~~~~~~~~~dvVi~~~d~--~-------~~--------r~~l~~~~~~~~~p~i~~~~~g~~G 280 (525)
+..++.+. ...+.++++|+||.+... . .. ...+.+.|++.+..+|+.++...+|
T Consensus 70 ~~~Dl~d~~~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~SS~~vYg 141 (386)
T PLN02427 70 HRINIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 141 (386)
T ss_pred EEcCCCChHHHHHHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeeC
Confidence 44455433 344567788988865531 0 00 1123456777778888887765555
No 238
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=93.23 E-value=0.69 Score=46.68 Aligned_cols=91 Identities=18% Similarity=0.187 Sum_probs=53.5
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHc--CCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEe
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAAS--GVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAY 227 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~--GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~ 227 (525)
++..+|.|||+|.+|..++++|... |+.-..++|.+. .|++..+ .+.+ ....
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~-------------------~~a~~~a---~~~g-~~~~--- 57 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDP-------------------QRHADFI---WGLR-RPPP--- 57 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCH-------------------HHHHHHH---HhcC-CCcc---
Confidence 4457899999999999999999874 443223444321 1222222 2221 0000
Q ss_pred eecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEE
Q psy13373 228 QTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVS 272 (525)
Q Consensus 228 ~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~ 272 (525)
. .+..+++.+.|+|+.|+-+... ..+...+.+.|++++.
T Consensus 58 ---~--~~~eell~~~D~Vvi~tp~~~h-~e~~~~aL~aGk~Vi~ 96 (271)
T PRK13302 58 ---V--VPLDQLATHADIVVEAAPASVL-RAIVEPVLAAGKKAIV 96 (271)
T ss_pred ---c--CCHHHHhcCCCEEEECCCcHHH-HHHHHHHHHcCCcEEE
Confidence 1 1244566778999888766443 4444556677887765
No 239
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.22 E-value=0.13 Score=41.56 Aligned_cols=58 Identities=17% Similarity=0.250 Sum_probs=40.1
Q ss_pred cEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEE
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVH 225 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~ 225 (525)
||+|||.|-+|.++|..|+..|. +++|++...- ++ ...+..=.+.+.+.+++. ++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~--------~~---~~~~~~~~~~~~~~l~~~--gV~v~ 58 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR--------LL---PGFDPDAAKILEEYLRKR--GVEVH 58 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS--------SS---TTSSHHHHHHHHHHHHHT--TEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch--------hh---hhcCHHHHHHHHHHHHHC--CCEEE
Confidence 68999999999999999999995 6888765441 11 222333355666777776 34443
No 240
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.22 E-value=0.36 Score=49.78 Aligned_cols=99 Identities=20% Similarity=0.235 Sum_probs=60.7
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCC-CcEEEEeeecC
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINR-NTIVHAYQTLL 231 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp-~v~v~~~~~~i 231 (525)
.+|.|+|+|+.|+.+|+.|++.| ..+++...|.-...+++.. +.|+ +..-...+..+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~---------------------~~N~~yLp~i~lp~~l 59 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINET---------------------RENPKYLPGILLPPNL 59 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhc---------------------CcCccccCCccCCccc
Confidence 58999999999999999999999 6666654432211111110 0122 22111222222
Q ss_pred C-cchHhHhhccCCeEeecCCCHHHHHHHHHH--hHhcCCcEEEe
Q psy13373 232 D-TSNACDIIRRYDVVVDACDNAPTRYLLNDA--CLREGRPLVSA 273 (525)
Q Consensus 232 ~-~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~--~~~~~~p~i~~ 273 (525)
. ..+..+.++++|+|+.++.+...|..+..+ ....+.+++++
T Consensus 60 ~at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~ 104 (329)
T COG0240 60 KATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLKDAIIVSA 104 (329)
T ss_pred ccccCHHHHHhcCCEEEEECChHHHHHHHHHHhhhccCCCeEEEE
Confidence 1 223567788899999998888888776665 23455566665
No 241
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.22 E-value=0.45 Score=51.50 Aligned_cols=97 Identities=14% Similarity=0.116 Sum_probs=57.4
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecCC
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLD 232 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~ 232 (525)
++|+|||+|+.|..+|..|.+.|. +++++|..... +...+...|.+. .+++..- ....
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~~~------------------~~~~~~~~l~~~--gi~~~~g-~~~~ 58 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRNDSP------------------ELLERQQELEQE--GITVKLG-KPLE 58 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCch------------------hhHHHHHHHHHc--CCEEEEC-Cccc
Confidence 479999999999999999999997 68888765421 122223344443 3444321 1111
Q ss_pred cchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEE
Q psy13373 233 TSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVS 272 (525)
Q Consensus 233 ~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~ 272 (525)
.+.....+.++|+||-+..-.... -+-..+++.++|++.
T Consensus 59 ~~~~~~~~~~~d~vv~s~gi~~~~-~~~~~a~~~~i~v~~ 97 (459)
T PRK02705 59 LESFQPWLDQPDLVVVSPGIPWDH-PTLVELRERGIEVIG 97 (459)
T ss_pred hhhhhHHhhcCCEEEECCCCCCCC-HHHHHHHHcCCcEEE
Confidence 112224567889888643332222 233445677777765
No 242
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=93.20 E-value=0.86 Score=47.21 Aligned_cols=102 Identities=15% Similarity=0.167 Sum_probs=58.0
Q ss_pred CcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecC
Q psy13373 153 ASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLL 231 (525)
Q Consensus 153 ~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i 231 (525)
++|+|.|+ |-+|+++++.|...|=-+++.+|...- + +..+.+.-.++.+...+
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~---~-----------------------~~~~~~~~~~~~~~~Dl 55 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTD---R-----------------------LGDLVNHPRMHFFEGDI 55 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHH---H-----------------------HHHhccCCCeEEEeCCC
Confidence 36999997 669999999999763236777764221 0 00111111234444444
Q ss_pred C-c-chHhHhhccCCeEeecCC--C---------------HHHHHHHHHHhHhcCCcEEEecccCccc
Q psy13373 232 D-T-SNACDIIRRYDVVVDACD--N---------------APTRYLLNDACLREGRPLVSASALGLEG 280 (525)
Q Consensus 232 ~-~-~~~~~~~~~~dvVi~~~d--~---------------~~~r~~l~~~~~~~~~p~i~~~~~g~~G 280 (525)
. + +...+.++++|+||.+.. . ......+-+.|++.+..+|+.++...+|
T Consensus 56 ~~~~~~~~~~~~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~~vyg 123 (347)
T PRK11908 56 TINKEWIEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYG 123 (347)
T ss_pred CCCHHHHHHHHcCCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecceeec
Confidence 3 2 223355677888885421 1 0111234567777788899887765444
No 243
>PRK07063 short chain dehydrogenase; Provisional
Probab=93.18 E-value=0.48 Score=46.69 Aligned_cols=65 Identities=23% Similarity=0.273 Sum_probs=43.7
Q ss_pred HhhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEe
Q psy13373 149 KLLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAY 227 (525)
Q Consensus 149 kL~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~ 227 (525)
+|++++|+|.|+ ||+|.++++.|+..|.. +.++|.+ ..+.+.+++.+.+.++..++..+
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~-vv~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 63 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAA-VALADLD-------------------AALAERAAAAIARDVAGARVLAV 63 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCC-------------------HHHHHHHHHHHHhccCCceEEEE
Confidence 477889999985 67999999999999975 6666532 23445555556554444555555
Q ss_pred eecCCc
Q psy13373 228 QTLLDT 233 (525)
Q Consensus 228 ~~~i~~ 233 (525)
..++++
T Consensus 64 ~~Dl~~ 69 (260)
T PRK07063 64 PADVTD 69 (260)
T ss_pred EccCCC
Confidence 555543
No 244
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=93.15 E-value=0.42 Score=50.57 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=28.7
Q ss_pred CcEEEEc-CCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 153 ASVLIVG-CGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 153 ~~VlViG-~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
.+|+||| +|.+|..+++.|...|. .++++|.+
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCC
Confidence 6899998 99999999999999994 58888864
No 245
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.13 E-value=0.56 Score=46.71 Aligned_cols=88 Identities=15% Similarity=0.177 Sum_probs=51.6
Q ss_pred cEEEEcCCcchHHHHHHhHHcCCc--eEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecC
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGVG--TLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLL 231 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GVg--~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i 231 (525)
+|.|||+|.+|..+++.|...|.. .+.+.|.+ ..|++ .+.+..+.+.+ .
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~-------------------~~~~~----~l~~~~~~~~~--~---- 52 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRN-------------------AQIAA----RLAERFPKVRI--A---- 52 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCC-------------------HHHHH----HHHHHcCCceE--e----
Confidence 699999999999999999998853 23333211 12222 22232222222 1
Q ss_pred CcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEE
Q psy13373 232 DTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVS 272 (525)
Q Consensus 232 ~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~ 272 (525)
.+..+.++++|+||.|+-.......+.+.....+.-+|+
T Consensus 53 --~~~~~~~~~aDvVilav~p~~~~~vl~~l~~~~~~~vis 91 (258)
T PRK06476 53 --KDNQAVVDRSDVVFLAVRPQIAEEVLRALRFRPGQTVIS 91 (258)
T ss_pred --CCHHHHHHhCCEEEEEeCHHHHHHHHHHhccCCCCEEEE
Confidence 123455678999999988655555555543233444555
No 246
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.13 E-value=0.31 Score=51.38 Aligned_cols=105 Identities=10% Similarity=0.052 Sum_probs=60.2
Q ss_pred hcCcEEEEcCCcchHHHHHHhHHcCC------ceEEEEeCCcccccCCCcccccCCCCC-CCcHHHHHHHHH--HhhCCC
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAASGV------GTLGLADYDRVELSNLHRQVIHTTHTI-GQPKVTSAKRFI--SAINRN 221 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~~GV------g~i~lvD~d~V~~sNL~Rq~l~~~~di-G~~Ka~~~~~~l--~~lnp~ 221 (525)
...+|.|+|+|+.|+++|..|+..|. .+++|...|. ++ ++.-++...+.= .+.-|+
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~---------------~~~~~~~~~~in~~~~N~~ylp~ 74 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEE---------------IVEGEKLSDIINTKHENVKYLPG 74 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecc---------------cccchHHHHHHHhcCCCcccCCC
Confidence 34589999999999999999999874 3666653332 11 111111111100 011122
Q ss_pred cEEEEeeecCCc-chHhHhhccCCeEeecCCCHHHHHHHHHHhH----hcCCcEEEe
Q psy13373 222 TIVHAYQTLLDT-SNACDIIRRYDVVVDACDNAPTRYLLNDACL----REGRPLVSA 273 (525)
Q Consensus 222 v~v~~~~~~i~~-~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~----~~~~p~i~~ 273 (525)
++ .+..+.. .+..+.++++|+||.++-+...+..+.++.. ..+.++|++
T Consensus 75 ~~---Lp~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~ 128 (365)
T PTZ00345 75 IK---LPDNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISL 128 (365)
T ss_pred Cc---CCCceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEE
Confidence 22 1222211 1244678899999999998888877776642 223355554
No 247
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=93.13 E-value=0.32 Score=47.26 Aligned_cols=36 Identities=28% Similarity=0.346 Sum_probs=29.4
Q ss_pred HhhcCcEEEEc-CCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 149 KLLNASVLIVG-CGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 149 kL~~~~VlViG-~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
.+++++|+|.| .|++|..+++.|+..|. ++.+++.+
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~ 39 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDIC 39 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 36678999998 57799999999999997 57776554
No 248
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=93.04 E-value=0.14 Score=55.46 Aligned_cols=37 Identities=24% Similarity=0.482 Sum_probs=32.7
Q ss_pred HhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 149 KLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 149 kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
.|.+++|+|+|+|.+|..+|+.|...|. +++++|.|.
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp 287 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDP 287 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 4789999999999999999999999999 588876654
No 249
>PLN02240 UDP-glucose 4-epimerase
Probab=93.02 E-value=1 Score=46.56 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=28.2
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEe
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLAD 183 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD 183 (525)
|++++|+|.|+ |.+|+.+++.|+..|. +++++|
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~ 36 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVID 36 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence 56789999985 7799999999999995 677776
No 250
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.00 E-value=0.13 Score=46.49 Aligned_cols=88 Identities=19% Similarity=0.231 Sum_probs=49.9
Q ss_pred EEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecCCcc
Q psy13373 155 VLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDTS 234 (525)
Q Consensus 155 VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~~ 234 (525)
|+|+|+|++|+.+|..|...|.. +++++... ....+.++-+ .-..+.-+..........
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~~r~~-~~~~~~~~g~------------------~~~~~~~~~~~~~~~~~~- 59 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHD-VTLVSRSP-RLEAIKEQGL------------------TITGPDGDETVQPPIVIS- 59 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCE-EEEEESHH-HHHHHHHHCE------------------EEEETTEEEEEEEEEEES-
T ss_pred CEEECcCHHHHHHHHHHHHCCCc-eEEEEccc-cHHhhhheeE------------------EEEecccceecccccccC-
Confidence 78999999999999999997776 77764433 1111111111 000111001111111010
Q ss_pred hHhHhhccCCeEeecCCCHHHHHHHHHHh
Q psy13373 235 NACDIIRRYDVVVDACDNAPTRYLLNDAC 263 (525)
Q Consensus 235 ~~~~~~~~~dvVi~~~d~~~~r~~l~~~~ 263 (525)
........+|+||.|+=.......+..+.
T Consensus 60 ~~~~~~~~~D~viv~vKa~~~~~~l~~l~ 88 (151)
T PF02558_consen 60 APSADAGPYDLVIVAVKAYQLEQALQSLK 88 (151)
T ss_dssp SHGHHHSTESEEEE-SSGGGHHHHHHHHC
T ss_pred cchhccCCCcEEEEEecccchHHHHHHHh
Confidence 11245678999999998888888777764
No 251
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=92.98 E-value=0.87 Score=50.61 Aligned_cols=84 Identities=12% Similarity=0.136 Sum_probs=50.8
Q ss_pred HHhhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhC-------
Q psy13373 148 EKLLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAIN------- 219 (525)
Q Consensus 148 ~kL~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~ln------- 219 (525)
+...++.|+|.|+ |++|..+++.|+..|. ++++++.+. .|.+.+.+.+.++.
T Consensus 76 ~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~-------------------ekl~~l~~~l~~~~L~~~Ga~ 135 (576)
T PLN03209 76 DTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSA-------------------QRAESLVQSVKQMKLDVEGTQ 135 (576)
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHhhhhcccccccc
Confidence 3345678889985 7899999999999997 455543321 12333333332211
Q ss_pred CCcEEEEeeecCCcc-hHhHhhccCCeEeecCC
Q psy13373 220 RNTIVHAYQTLLDTS-NACDIIRRYDVVVDACD 251 (525)
Q Consensus 220 p~v~v~~~~~~i~~~-~~~~~~~~~dvVi~~~d 251 (525)
+..++..+...+.+. ...+.+.++|+||.+..
T Consensus 136 ~~~~v~iV~gDLtD~esI~~aLggiDiVVn~AG 168 (576)
T PLN03209 136 PVEKLEIVECDLEKPDQIGPALGNASVVICCIG 168 (576)
T ss_pred ccCceEEEEecCCCHHHHHHHhcCCCEEEEccc
Confidence 112345555555543 34556789999998754
No 252
>PLN03139 formate dehydrogenase; Provisional
Probab=92.97 E-value=0.33 Score=51.52 Aligned_cols=93 Identities=20% Similarity=0.213 Sum_probs=58.6
Q ss_pred HHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEe
Q psy13373 148 EKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAY 227 (525)
Q Consensus 148 ~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~ 227 (525)
..|.+++|.|||+|.+|..+|+.|...|+. +..+|..... .+.. .+. . +..
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~~~~~-------------------~~~~----~~~--g--~~~- 245 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDRLKMD-------------------PELE----KET--G--AKF- 245 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECCCCcc-------------------hhhH----hhc--C--cee-
Confidence 469999999999999999999999999985 5666642210 0000 011 1 111
Q ss_pred eecCCcchHhHhhccCCeEeecC-CCHHHHHHHHHHhH---hcCCcEEEec
Q psy13373 228 QTLLDTSNACDIIRRYDVVVDAC-DNAPTRYLLNDACL---REGRPLVSAS 274 (525)
Q Consensus 228 ~~~i~~~~~~~~~~~~dvVi~~~-d~~~~r~~l~~~~~---~~~~p~i~~~ 274 (525)
.++..++++.+|+|+.+. .+.+++.++++-.. +.+.-+|+.+
T Consensus 246 -----~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 291 (386)
T PLN03139 246 -----EEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNA 291 (386)
T ss_pred -----cCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECC
Confidence 113567888999887544 45567777765432 3344466654
No 253
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=92.93 E-value=0.35 Score=50.16 Aligned_cols=32 Identities=28% Similarity=0.371 Sum_probs=28.4
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
.+|+|||+|.+|+.+|..|+..|. +++++|.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence 479999999999999999999995 58888764
No 254
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.89 E-value=0.87 Score=46.00 Aligned_cols=90 Identities=17% Similarity=0.158 Sum_probs=55.4
Q ss_pred cEEEEcCCcchHHHHHHhHHcCC---ceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeec
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGV---GTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTL 230 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GV---g~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 230 (525)
+|.|||+|.+|..++..|...|. .++.+++.+.- .|.+ .+....+.+.+
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~------------------~~~~----~l~~~~~~~~~------ 54 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKN------------------EHFN----QLYDKYPTVEL------ 54 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcH------------------HHHH----HHHHHcCCeEE------
Confidence 69999999999999999999983 46776654320 1111 12222222211
Q ss_pred CCcchHhHhhccCCeEeecCCCHHHHHHHHHHh--HhcCCcEEEe
Q psy13373 231 LDTSNACDIIRRYDVVVDACDNAPTRYLLNDAC--LREGRPLVSA 273 (525)
Q Consensus 231 i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~--~~~~~p~i~~ 273 (525)
.. +..+.+.++|+||.|+-....+..+.++. ...+..+|+.
T Consensus 55 -~~-~~~e~~~~aDvVilavpp~~~~~vl~~l~~~l~~~~~ivS~ 97 (277)
T PRK06928 55 -AD-NEAEIFTKCDHSFICVPPLAVLPLLKDCAPVLTPDRHVVSI 97 (277)
T ss_pred -eC-CHHHHHhhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 11 23456778999999988766666666553 2345555654
No 255
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=92.89 E-value=0.06 Score=49.87 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=61.3
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecCC
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLD 232 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~ 232 (525)
.+|.+||+|..|+.+|++|+..|.. ++++|.+.=....+.. .|-..++..++.+++. ++-+...+..-.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~-v~~~d~~~~~~~~~~~--------~g~~~~~s~~e~~~~~--dvvi~~v~~~~~ 70 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYE-VTVYDRSPEKAEALAE--------AGAEVADSPAEAAEQA--DVVILCVPDDDA 70 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTE-EEEEESSHHHHHHHHH--------TTEEEESSHHHHHHHB--SEEEE-SSSHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCe-EEeeccchhhhhhhHH--------hhhhhhhhhhhHhhcc--cceEeecccchh
Confidence 4899999999999999999999975 7788754311111111 0111122223333332 333333222100
Q ss_pred cch------HhHhhccCCeEeecCCC-HHHHHHHHHHhHhcCCcEEEecccCc
Q psy13373 233 TSN------ACDIIRRYDVVVDACDN-APTRYLLNDACLREGRPLVSASALGL 278 (525)
Q Consensus 233 ~~~------~~~~~~~~dvVi~~~d~-~~~r~~l~~~~~~~~~p~i~~~~~g~ 278 (525)
-++ ....+..-++|||++.. ++....+.+.+...|+.+|++.+.|.
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg 123 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGG 123 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESH
T ss_pred hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecc
Confidence 000 11222345577766554 44566788888888999999877663
No 256
>PRK05875 short chain dehydrogenase; Provisional
Probab=92.88 E-value=0.45 Score=47.37 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=29.7
Q ss_pred HhhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 149 KLLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 149 kL~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
.|++++|+|.|+ |++|.++++.|+..|. ++.+++.
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r 39 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGR 39 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeC
Confidence 367899999996 7899999999999998 5777654
No 257
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=92.84 E-value=0.63 Score=48.38 Aligned_cols=36 Identities=28% Similarity=0.097 Sum_probs=29.9
Q ss_pred HhhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 149 KLLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 149 kL~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
++++++|+|.|+ |=+|+.+++.|...|. +++.+|..
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~ 48 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNF 48 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 467799999996 6699999999999985 67777754
No 258
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=92.80 E-value=0.97 Score=46.67 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=27.3
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEE
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGL 181 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~l 181 (525)
|++++|.|||+|.+|..++++|..+|+. +.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~-Viv 31 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLN-VIV 31 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCe-EEE
Confidence 5789999999999999999999999984 444
No 259
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=92.77 E-value=1.2 Score=45.84 Aligned_cols=36 Identities=28% Similarity=0.306 Sum_probs=29.3
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcC-CceEEEEeCC
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASG-VGTLGLADYD 185 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~G-Vg~i~lvD~d 185 (525)
|++++|+|.|+ |++|+.+++.|+..| ..+++++|.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~ 39 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRD 39 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 45788999985 779999999999987 4578887654
No 260
>PRK07831 short chain dehydrogenase; Provisional
Probab=92.75 E-value=0.66 Score=45.78 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=28.3
Q ss_pred hhcCcEEEEcC-C-cchHHHHHHhHHcCCceEEEEeC
Q psy13373 150 LLNASVLIVGC-G-GTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 150 L~~~~VlViG~-G-glGs~ia~~La~~GVg~i~lvD~ 184 (525)
+++++++|.|. | |+|..+++.|+..|.. +.++|.
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~ 50 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDI 50 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeC
Confidence 56789999997 5 7999999999999986 666553
No 261
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.74 E-value=0.54 Score=47.52 Aligned_cols=31 Identities=26% Similarity=0.124 Sum_probs=27.7
Q ss_pred cEEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
+|.|||+|.+|..++..|...|. +++++|.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence 69999999999999999999986 68888764
No 262
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=92.74 E-value=0.16 Score=52.53 Aligned_cols=91 Identities=20% Similarity=0.235 Sum_probs=57.4
Q ss_pred HhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEee
Q psy13373 149 KLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQ 228 (525)
Q Consensus 149 kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 228 (525)
.|.+++|.|||+|.+|+.+|+.|...|++ +..+|+-.-.. + ....
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d~~~~~~-----------------~-----------------~~~~ 183 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYDPYSPRE-----------------R-----------------AGVD 183 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCCe-EEEECCCCchh-----------------h-----------------hccc
Confidence 67899999999999999999999999997 44444411000 0 0000
Q ss_pred ecCCcchHhHhhccCCeEeecCC-CHHHHHHHHHHh---HhcCCcEEEec
Q psy13373 229 TLLDTSNACDIIRRYDVVVDACD-NAPTRYLLNDAC---LREGRPLVSAS 274 (525)
Q Consensus 229 ~~i~~~~~~~~~~~~dvVi~~~d-~~~~r~~l~~~~---~~~~~p~i~~~ 274 (525)
......+.++++..+|+|+..+- +.+++-+|+..- .+.|.-+|+++
T Consensus 184 ~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~a 233 (324)
T COG0111 184 GVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAA 233 (324)
T ss_pred cceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECC
Confidence 00112336788899998875544 445677776543 22345567653
No 263
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=92.68 E-value=0.28 Score=50.88 Aligned_cols=104 Identities=21% Similarity=0.292 Sum_probs=63.2
Q ss_pred hhhcccccccCHHH------HHHhhcCcEEEEcCCcchHHHHHHhHHcCCc-eEEEEeCCcccccCCCcccccCCCCCCC
Q psy13373 133 YSRQILLDQVGVMG------QEKLLNASVLIVGCGGTGSPCIQYLAASGVG-TLGLADYDRVELSNLHRQVIHTTHTIGQ 205 (525)
Q Consensus 133 ysRq~~l~~~G~~~------q~kL~~~~VlViG~GglGs~ia~~La~~GVg-~i~lvD~d~V~~sNL~Rq~l~~~~diG~ 205 (525)
++|+.+--+|...+ -..+.+++|.|+|+|.+|.++|+.+. |+| +|...|....
T Consensus 121 ~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~--~Fgm~v~y~~~~~~------------------ 180 (324)
T COG1052 121 GDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLK--GFGMKVLYYDRSPN------------------ 180 (324)
T ss_pred HHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHh--cCCCEEEEECCCCC------------------
Confidence 44444443444432 24688999999999999999999999 554 3444433221
Q ss_pred cHHHHHHHHHHhhCCCcEEEEeeecCCcchHhHhhccCCeEe-ecCCCHHHHHHHHHHhHhc---CCcEEEe
Q psy13373 206 PKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVV-DACDNAPTRYLLNDACLRE---GRPLVSA 273 (525)
Q Consensus 206 ~Ka~~~~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi-~~~d~~~~r~~l~~~~~~~---~~p~i~~ 273 (525)
++.+ ++.+ ... +. ..++++++|+|+ .|-.+.+++.+||..-.+. +.-+|+.
T Consensus 181 ~~~~------~~~~----~~y----~~---l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNt 235 (324)
T COG1052 181 PEAE------KELG----ARY----VD---LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNT 235 (324)
T ss_pred hHHH------hhcC----cee----cc---HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEEC
Confidence 0000 0000 111 11 568899999875 6667778888888765443 3446665
No 264
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.66 E-value=0.3 Score=53.02 Aligned_cols=36 Identities=28% Similarity=0.436 Sum_probs=31.5
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
+.+++|+|+|.|..|..+|+.|...|. .+++.|...
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~ 47 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKS 47 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 567899999999999999999999997 688888543
No 265
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.60 E-value=0.71 Score=50.73 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=29.5
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
.+|.|||+|.+|+.+|.+|++.|. +++++|.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 479999999999999999999998 688988754
No 266
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=92.53 E-value=0.55 Score=46.98 Aligned_cols=74 Identities=15% Similarity=0.104 Sum_probs=50.2
Q ss_pred hcCcEEEEcCCcchHHHHHHhHHcCC---ceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEe
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAASGV---GTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAY 227 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~~GV---g~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~ 227 (525)
.+.+|.|||+|-+|+.+++.|...|+ .++.++|.+.-. .+ +..
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~--------------~~-------------------~~~- 47 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN--------------TP-------------------FVY- 47 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc--------------CC-------------------eEE-
Confidence 45689999999999999999999874 236666543200 00 011
Q ss_pred eecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHh
Q psy13373 228 QTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDAC 263 (525)
Q Consensus 228 ~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~ 263 (525)
.. +..+.++++|+||.|+-....+..+.+..
T Consensus 48 ----~~-~~~~~~~~~D~Vilavkp~~~~~vl~~i~ 78 (260)
T PTZ00431 48 ----LQ-SNEELAKTCDIIVLAVKPDLAGKVLLEIK 78 (260)
T ss_pred ----eC-ChHHHHHhCCEEEEEeCHHHHHHHHHHHH
Confidence 11 12345678999999988877777777664
No 267
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=92.48 E-value=0.68 Score=49.52 Aligned_cols=40 Identities=25% Similarity=0.425 Sum_probs=33.6
Q ss_pred cEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCc
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHR 194 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~R 194 (525)
+|.|||+|-+|..+|..|+..|. +++++|.+.-....++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~~ 41 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLNK 41 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhhc
Confidence 69999999999999999999997 58999987655555554
No 268
>PTZ00325 malate dehydrogenase; Provisional
Probab=92.39 E-value=0.32 Score=50.38 Aligned_cols=35 Identities=31% Similarity=0.430 Sum_probs=30.3
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCC-ceEEEEeC
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGV-GTLGLADY 184 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GV-g~i~lvD~ 184 (525)
++-.||+|+|+ |.+|+.++..|+..|. .+|.|+|-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 45569999999 9999999999997776 57999987
No 269
>PRK07576 short chain dehydrogenase; Provisional
Probab=92.35 E-value=0.33 Score=48.23 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=32.0
Q ss_pred HHHHhhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 146 GQEKLLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 146 ~q~kL~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
++.+|++++|+|.|+ |++|.++++.|+..|.. +.++|.+
T Consensus 3 ~~~~~~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r~ 42 (264)
T PRK07576 3 TMFDFAGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASRS 42 (264)
T ss_pred ccccCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence 345688899999986 78999999999999975 7776654
No 270
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.34 E-value=1 Score=45.51 Aligned_cols=90 Identities=14% Similarity=0.194 Sum_probs=55.0
Q ss_pred cCcEEEEcCCcchHHHHHHhHHcCC---ceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEee
Q psy13373 152 NASVLIVGCGGTGSPCIQYLAASGV---GTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQ 228 (525)
Q Consensus 152 ~~~VlViG~GglGs~ia~~La~~GV---g~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 228 (525)
+.+|.+||+|-+|..+++.|...|. .+|.++|.+. .|++ .+.+.. .+. ..
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~-------------------~~~~----~l~~~~-g~~--~~- 54 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNV-------------------SNLK----NASDKY-GIT--IT- 54 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCH-------------------HHHH----HHHHhc-CcE--Ee-
Confidence 4579999999999999999999985 3466554321 1222 222211 222 11
Q ss_pred ecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhH--hcCCcEEEe
Q psy13373 229 TLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACL--REGRPLVSA 273 (525)
Q Consensus 229 ~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~--~~~~p~i~~ 273 (525)
. +..+.+.++|+||.|+-.......+.++.- +.+.-+|+.
T Consensus 55 ----~-~~~e~~~~aDiIiLavkP~~~~~vl~~l~~~~~~~~lvISi 96 (272)
T PRK12491 55 ----T-NNNEVANSADILILSIKPDLYSSVINQIKDQIKNDVIVVTI 96 (272)
T ss_pred ----C-CcHHHHhhCCEEEEEeChHHHHHHHHHHHHhhcCCcEEEEe
Confidence 1 123567789999999887666766666542 233334554
No 271
>PLN02688 pyrroline-5-carboxylate reductase
Probab=92.34 E-value=0.91 Score=45.28 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=48.6
Q ss_pred cEEEEcCCcchHHHHHHhHHcCC---ceEEEE-eCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeee
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGV---GTLGLA-DYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQT 229 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GV---g~i~lv-D~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~ 229 (525)
+|.+||+|.+|+.+++.|...|. .+|+++ |. ...|++ .+.+. .+.+.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r-------------------~~~~~~----~~~~~--g~~~~---- 52 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS-------------------NPARRD----VFQSL--GVKTA---- 52 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC-------------------CHHHHH----HHHHc--CCEEe----
Confidence 69999999999999999999985 245543 21 112222 22232 23221
Q ss_pred cCCcchHhHhhccCCeEeecCCCHHHHHHHHHHh
Q psy13373 230 LLDTSNACDIIRRYDVVVDACDNAPTRYLLNDAC 263 (525)
Q Consensus 230 ~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~ 263 (525)
.+..+..+++|+||.|+.....+..+.+..
T Consensus 53 ----~~~~e~~~~aDvVil~v~~~~~~~vl~~l~ 82 (266)
T PLN02688 53 ----ASNTEVVKSSDVIILAVKPQVVKDVLTELR 82 (266)
T ss_pred ----CChHHHHhcCCEEEEEECcHHHHHHHHHHH
Confidence 112355678999999997666666665553
No 272
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.32 E-value=0.37 Score=48.96 Aligned_cols=77 Identities=14% Similarity=0.322 Sum_probs=55.5
Q ss_pred HhhcCcEEEEcCCc-chHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEe
Q psy13373 149 KLLNASVLIVGCGG-TGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAY 227 (525)
Q Consensus 149 kL~~~~VlViG~Gg-lGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~ 227 (525)
.|++++|+|||.|. +|..+++.|...|. .+++++..+
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t----------------------------------------- 192 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRS----------------------------------------- 192 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCc-----------------------------------------
Confidence 47899999999999 99999999999885 566654210
Q ss_pred eecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEeccc
Q psy13373 228 QTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASAL 276 (525)
Q Consensus 228 ~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~ 276 (525)
.+..+.++++|+||.++..... +..--.+.+.-+|+.+..
T Consensus 193 ------~~l~~~~~~ADIVIsAvg~p~~---i~~~~vk~gavVIDvGi~ 232 (286)
T PRK14175 193 ------KDMASYLKDADVIVSAVGKPGL---VTKDVVKEGAVIIDVGNT 232 (286)
T ss_pred ------hhHHHHHhhCCEEEECCCCCcc---cCHHHcCCCcEEEEcCCC
Confidence 1345678899999999876532 322234556667777654
No 273
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=92.32 E-value=0.67 Score=45.14 Aligned_cols=90 Identities=23% Similarity=0.322 Sum_probs=53.8
Q ss_pred cEEEEcCCcchHHHHHHhHHc--CCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecC
Q psy13373 154 SVLIVGCGGTGSPCIQYLAAS--GVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLL 231 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~--GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i 231 (525)
+|.|||||++|..+++.+-.- .+.-+.++|.+ ..|+..+... .+...+
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~-------------------~ek~~~~~~~----~~~~~~------- 51 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRD-------------------EEKAKELEAS----VGRRCV------- 51 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCC-------------------HHHHHHHHhh----cCCCcc-------
Confidence 699999999999999876542 24444444443 3343333322 221111
Q ss_pred CcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEeccc
Q psy13373 232 DTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASAL 276 (525)
Q Consensus 232 ~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~ 276 (525)
...++++...|+||.|....+.+.+.- ...+.|+.+|..++.
T Consensus 52 --s~ide~~~~~DlvVEaAS~~Av~e~~~-~~L~~g~d~iV~SVG 93 (255)
T COG1712 52 --SDIDELIAEVDLVVEAASPEAVREYVP-KILKAGIDVIVMSVG 93 (255)
T ss_pred --ccHHHHhhccceeeeeCCHHHHHHHhH-HHHhcCCCEEEEech
Confidence 124566788899998866555554433 346778887766553
No 274
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.31 E-value=0.66 Score=45.11 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=29.8
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
+++++|+|+|+ |++|.++++.|+..|.. +++++..
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~ 38 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRN 38 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence 67789999995 67999999999999986 8877654
No 275
>PRK06270 homoserine dehydrogenase; Provisional
Probab=92.30 E-value=0.78 Score=47.89 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.8
Q ss_pred CcEEEEcCCcchHHHHHHhHHc
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAAS 174 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~ 174 (525)
-+|+|+|+|.+|+.+++.|...
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 4899999999999999999765
No 276
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=92.30 E-value=0.86 Score=45.84 Aligned_cols=95 Identities=19% Similarity=0.197 Sum_probs=58.7
Q ss_pred cEEEEc-CCcchHHHHHHhHH-cCCceEEEEe-CCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeec
Q psy13373 154 SVLIVG-CGGTGSPCIQYLAA-SGVGTLGLAD-YDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTL 230 (525)
Q Consensus 154 ~VlViG-~GglGs~ia~~La~-~GVg~i~lvD-~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 230 (525)
+|+|+| +|.+|..+++.+.. .++.-+.++| .+.-. +|+. +.+ +....+ ..+..+
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~--------------~~~~----~~~-~~~~~~-~gv~~~--- 59 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSL--------------QGTD----AGE-LAGIGK-VGVPVT--- 59 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc--------------cCCC----HHH-hcCcCc-CCceee---
Confidence 799999 59999999999986 4777777776 22100 0110 000 111111 011111
Q ss_pred CCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecc
Q psy13373 231 LDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASA 275 (525)
Q Consensus 231 i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~ 275 (525)
.+..++...+|+||+++ .+.....+...|.++|+|++.+.+
T Consensus 60 ---~d~~~l~~~~DvVIdfT-~p~~~~~~~~~al~~g~~vVigtt 100 (266)
T TIGR00036 60 ---DDLEAVETDPDVLIDFT-TPEGVLNHLKFALEHGVRLVVGTT 100 (266)
T ss_pred ---CCHHHhcCCCCEEEECC-ChHHHHHHHHHHHHCCCCEEEECC
Confidence 11223335689999998 556666788889999999998765
No 277
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=92.29 E-value=0.72 Score=41.88 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=53.2
Q ss_pred CcEEEEc-CCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecC
Q psy13373 153 ASVLIVG-CGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLL 231 (525)
Q Consensus 153 ~~VlViG-~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i 231 (525)
++|+|+| .+|+|.++++.|+..|-.++.++... .-..+.+.+...+...+ .++..+..++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~-----------------~~~~~~~~l~~~l~~~~--~~~~~~~~D~ 61 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS-----------------EDSEGAQELIQELKAPG--AKITFIECDL 61 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS-----------------CHHHHHHHHHHHHHHTT--SEEEEEESET
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec-----------------ccccccccccccccccc--cccccccccc
Confidence 3688888 67799999999999999999987654 11133445555566443 6666666555
Q ss_pred Ccch-H-------hHhhccCCeEeecCCCH
Q psy13373 232 DTSN-A-------CDIIRRYDVVVDACDNA 253 (525)
Q Consensus 232 ~~~~-~-------~~~~~~~dvVi~~~d~~ 253 (525)
.... . .+.+...|++|.+....
T Consensus 62 ~~~~~~~~~~~~~~~~~~~ld~li~~ag~~ 91 (167)
T PF00106_consen 62 SDPESIRALIEEVIKRFGPLDILINNAGIF 91 (167)
T ss_dssp TSHHHHHHHHHHHHHHHSSESEEEEECSCT
T ss_pred cccccccccccccccccccccccccccccc
Confidence 5431 1 12234788888665543
No 278
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.27 E-value=0.7 Score=52.58 Aligned_cols=96 Identities=17% Similarity=0.269 Sum_probs=54.3
Q ss_pred hcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccC--CCCCCCcHHHHHHHHHHhhCCCcEEEEee
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHT--THTIGQPKVTSAKRFISAINRNTIVHAYQ 228 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~--~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 228 (525)
.+.+|+|||+|..|-..|..|++.|.. ++++|.+. .++.+..+. ...+.+...+...+.++++ .+++....
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~~----~~GG~l~~gip~~~l~~~~~~~~~~~~~~~--Gv~~~~~~ 398 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRHP----EIGGLLTFGIPAFKLDKSLLARRREIFSAM--GIEFELNC 398 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecCC----CCCceeeecCCCccCCHHHHHHHHHHHHHC--CeEEECCC
Confidence 578999999999999999999999985 99998642 233222221 1111221122223334443 23333211
Q ss_pred ecCCcchHhHhhccCCeEeecCCCH
Q psy13373 229 TLLDTSNACDIIRRYDVVVDACDNA 253 (525)
Q Consensus 229 ~~i~~~~~~~~~~~~dvVi~~~d~~ 253 (525)
.--.+-...++...||.||.++...
T Consensus 399 ~v~~~i~~~~~~~~~DavilAtGa~ 423 (654)
T PRK12769 399 EVGKDISLESLLEDYDAVFVGVGTY 423 (654)
T ss_pred EeCCcCCHHHHHhcCCEEEEeCCCC
Confidence 1001112234456899999888764
No 279
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=92.24 E-value=0.55 Score=53.11 Aligned_cols=87 Identities=18% Similarity=0.253 Sum_probs=62.0
Q ss_pred cCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecC
Q psy13373 152 NASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLL 231 (525)
Q Consensus 152 ~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i 231 (525)
+.+|+|+|+|.+|..+++.|...|+. ++++|.|. .+++.++ +. +. .++..+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~-------------------~~v~~~~----~~--g~--~v~~GDa 451 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVK-MTVLDHDP-------------------DHIETLR----KF--GM--KVFYGDA 451 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCC-EEEEECCH-------------------HHHHHHH----hc--CC--eEEEEeC
Confidence 47999999999999999999999984 88888876 1233222 21 22 2344444
Q ss_pred CcchHh--HhhccCCeEeecCCCHHHHHHHHHHhHhc
Q psy13373 232 DTSNAC--DIIRRYDVVVDACDNAPTRYLLNDACLRE 266 (525)
Q Consensus 232 ~~~~~~--~~~~~~dvVi~~~d~~~~r~~l~~~~~~~ 266 (525)
+..+.. .-++++++||.++|+.+....+...+++.
T Consensus 452 t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~ 488 (621)
T PRK03562 452 TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEH 488 (621)
T ss_pred CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 544332 23568999999999988887777777765
No 280
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=92.18 E-value=0.64 Score=45.66 Aligned_cols=38 Identities=32% Similarity=0.490 Sum_probs=33.9
Q ss_pred HHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 148 EKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 148 ~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
..|+..+|+|.|.|.+|..+++.|...|.+-+.+.|.+
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~ 64 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD 64 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 45889999999999999999999999998877787764
No 281
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=92.18 E-value=0.36 Score=48.38 Aligned_cols=109 Identities=16% Similarity=0.107 Sum_probs=58.5
Q ss_pred cCcEEEEcCCcchHHHHHHhHHcCCceE---EEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEee
Q psy13373 152 NASVLIVGCGGTGSPCIQYLAASGVGTL---GLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQ 228 (525)
Q Consensus 152 ~~~VlViG~GglGs~ia~~La~~GVg~i---~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 228 (525)
..||.|||||.+|..|++.|..-+...+ .+.|.+.-...++. +..++-.--+.|....|++-|++-.
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~----------~~~~~~~~l~~ll~~~~DlVVE~A~ 71 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALA----------GRVALLDGLPGLLAWRPDLVVEAAG 71 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhh----------ccCcccCCHHHHhhcCCCEEEECCC
Confidence 3589999999999999999876433223 33333220010110 1111111122333445666666543
Q ss_pred ecCCcchHhHhhc-cCCeEeecCCCH---HHHHHHHHHhHhcCCcE
Q psy13373 229 TLLDTSNACDIIR-RYDVVVDACDNA---PTRYLLNDACLREGRPL 270 (525)
Q Consensus 229 ~~i~~~~~~~~~~-~~dvVi~~~d~~---~~r~~l~~~~~~~~~p~ 270 (525)
.....+....+++ +.|+|+....-+ .....+.+.|++.+..+
T Consensus 72 ~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i 117 (267)
T PRK13301 72 QQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARI 117 (267)
T ss_pred HHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEE
Confidence 3333333455565 788887654433 35556777777766544
No 282
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=92.16 E-value=0.17 Score=51.09 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=30.9
Q ss_pred cCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 152 NASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 152 ~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
+++|+|+|+||.+..++..|+..|+++|+|++.+
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 155 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARN 155 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3589999999999999999999999999998653
No 283
>PLN00106 malate dehydrogenase
Probab=92.11 E-value=0.63 Score=48.23 Aligned_cols=36 Identities=25% Similarity=0.406 Sum_probs=31.7
Q ss_pred hcCcEEEEcC-CcchHHHHHHhHHcCC-ceEEEEeCCc
Q psy13373 151 LNASVLIVGC-GGTGSPCIQYLAASGV-GTLGLADYDR 186 (525)
Q Consensus 151 ~~~~VlViG~-GglGs~ia~~La~~GV-g~i~lvD~d~ 186 (525)
...||+|+|+ |.+|+.++..|+..|. .+|.|+|-+.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 4569999999 9999999999998877 6899998765
No 284
>PRK08374 homoserine dehydrogenase; Provisional
Probab=92.11 E-value=0.94 Score=47.22 Aligned_cols=107 Identities=21% Similarity=0.335 Sum_probs=57.6
Q ss_pred CcEEEEcCCcchHHHHHHhHH--------cCC--ceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCc
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAA--------SGV--GTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNT 222 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~--------~GV--g~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v 222 (525)
-+|+|+|+|.+|+.+++.|.. .|+ .=+.+.|.+. .++.+..+...+ +.+..++...
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~---------~~~~~~Gid~~~---l~~~~~~~~~-- 68 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSG---------TIWLPEDIDLRE---AKEVKENFGK-- 68 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCc---------cccCCCCCChHH---HHHhhhccCc--
Confidence 589999999999999999876 673 3344444321 122333232222 2222222111
Q ss_pred EEEEeee--cCCcchHhHhh--ccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecc
Q psy13373 223 IVHAYQT--LLDTSNACDII--RRYDVVVDACDNAPTRYLLNDACLREGRPLVSASA 275 (525)
Q Consensus 223 ~v~~~~~--~i~~~~~~~~~--~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~ 275 (525)
+..+.. .....+..+++ .++|+||+++...... .+-..+.+.|+++|.+..
T Consensus 69 -~~~~~~~~~~~~~~~~ell~~~~~DVvVd~t~~~~a~-~~~~~al~~G~~VVtanK 123 (336)
T PRK08374 69 -LSNWGNDYEVYNFSPEEIVEEIDADIVVDVTNDKNAH-EWHLEALKEGKSVVTSNK 123 (336)
T ss_pred -hhhccccccccCCCHHHHHhcCCCCEEEECCCcHHHH-HHHHHHHhhCCcEEECCH
Confidence 111110 00011234555 4789999998654443 445556778888887643
No 285
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=91.85 E-value=0.62 Score=47.25 Aligned_cols=31 Identities=32% Similarity=0.401 Sum_probs=27.2
Q ss_pred cEEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
+|.|||+|.+|+.++.+|+..|. +++++|.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 58999999999999999999996 57777654
No 286
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=91.83 E-value=0.29 Score=50.29 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=29.7
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeC
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
.+|.|||+|-+|+.+|..|+..|..++.++|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 48999999999999999999999878999987
No 287
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=91.81 E-value=0.67 Score=48.42 Aligned_cols=102 Identities=13% Similarity=0.163 Sum_probs=58.7
Q ss_pred cEEEEcCCcchHHHHHHhHHcCC-------ceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEE--
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGV-------GTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIV-- 224 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GV-------g~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v-- 224 (525)
+|.|||+|..|+.+|..|+..|. .+++|...+. ++-.. ...+.+.+...+.+.
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~---------------~~~~~---~~~~~in~~~~n~~ylp 62 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEE---------------EIEGR---NLTEIINTTHENVKYLP 62 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecc---------------ccCCH---HHHHHHHhcCCCccccC
Confidence 68999999999999999999883 4677764421 11000 112222221111100
Q ss_pred -EEeeecCCc-chHhHhhccCCeEeecCCCHHHHHHHHHHh--HhcCCcEEEe
Q psy13373 225 -HAYQTLLDT-SNACDIIRRYDVVVDACDNAPTRYLLNDAC--LREGRPLVSA 273 (525)
Q Consensus 225 -~~~~~~i~~-~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~--~~~~~p~i~~ 273 (525)
...+..+.. .+..+.++++|+||.++-+...+..+.++. .+.+.++|++
T Consensus 63 gi~Lp~~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~ 115 (342)
T TIGR03376 63 GIKLPANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISC 115 (342)
T ss_pred CCcCCCCeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEE
Confidence 001111111 134567899999999998888887766653 2345566664
No 288
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=91.79 E-value=0.2 Score=51.16 Aligned_cols=31 Identities=32% Similarity=0.492 Sum_probs=28.4
Q ss_pred EEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 155 VLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 155 VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
|.|||+|.+|+.+|..|+..|..+++|+|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 6899999999999999999886699999987
No 289
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=91.76 E-value=1.4 Score=44.22 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=24.9
Q ss_pred cEEEEcC-CcchHHHHHHhHHcCC-ceEEEEeC
Q psy13373 154 SVLIVGC-GGTGSPCIQYLAASGV-GTLGLADY 184 (525)
Q Consensus 154 ~VlViG~-GglGs~ia~~La~~GV-g~i~lvD~ 184 (525)
+|+|.|. |.+|.++++.|...|- -+++++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 5899985 7899999999999873 46777654
No 290
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=91.71 E-value=1.3 Score=45.89 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=28.8
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
+++++|+|.|+ |.+|+++++.|+..|. +++++|.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~ 37 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLD 37 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCC
Confidence 46789999996 6699999999999995 46766654
No 291
>PRK06545 prephenate dehydrogenase; Validated
Probab=91.69 E-value=0.74 Score=48.38 Aligned_cols=33 Identities=33% Similarity=0.452 Sum_probs=27.8
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
.+|+|||+|.+|..+++.|...|. .+.++|.|.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~~ 33 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGYDP 33 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeCC
Confidence 479999999999999999999997 566776543
No 292
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=91.68 E-value=1.4 Score=50.09 Aligned_cols=109 Identities=16% Similarity=0.125 Sum_probs=62.1
Q ss_pred HHHHhhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEE
Q psy13373 146 GQEKLLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIV 224 (525)
Q Consensus 146 ~q~kL~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v 224 (525)
+-.--++++|+|.|+ |-+|+++++.|...|=-+++.+|...- +..+ ..+.-.+
T Consensus 309 ~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~---~~~~-----------------------~~~~~~~ 362 (660)
T PRK08125 309 ACSAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSD---AISR-----------------------FLGHPRF 362 (660)
T ss_pred hhhhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCch---hhhh-----------------------hcCCCce
Confidence 344556778999995 669999999999864236777765321 0000 0011123
Q ss_pred EEeeecCCcch--HhHhhccCCeEeecCCC-----------------HHHHHHHHHHhHhcCCcEEEecccCccc
Q psy13373 225 HAYQTLLDTSN--ACDIIRRYDVVVDACDN-----------------APTRYLLNDACLREGRPLVSASALGLEG 280 (525)
Q Consensus 225 ~~~~~~i~~~~--~~~~~~~~dvVi~~~d~-----------------~~~r~~l~~~~~~~~~p~i~~~~~g~~G 280 (525)
+.+..++.+.. ..+.++++|+||.+... ......+-+.|++.+..+|+.++...+|
T Consensus 363 ~~~~gDl~d~~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~~~V~~SS~~vyg 437 (660)
T PRK08125 363 HFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIFPSTSEVYG 437 (660)
T ss_pred EEEeccccCcHHHHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCCeEEEEcchhhcC
Confidence 33444454321 23456678888753321 1111235567788888888887765554
No 293
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=91.58 E-value=0.71 Score=52.00 Aligned_cols=88 Identities=16% Similarity=0.217 Sum_probs=61.8
Q ss_pred cCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecC
Q psy13373 152 NASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLL 231 (525)
Q Consensus 152 ~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i 231 (525)
+.+|+|+|.|.+|..+++.|...|+. ++++|.|. .+++. +++. +. .++..+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~-------------------~~v~~----~~~~--g~--~v~~GDa 451 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMR-ITVLERDI-------------------SAVNL----MRKY--GY--KVYYGDA 451 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCC-EEEEECCH-------------------HHHHH----HHhC--CC--eEEEeeC
Confidence 56999999999999999999999985 88888875 12222 2222 22 3444445
Q ss_pred CcchHh--HhhccCCeEeecCCCHHHHHHHHHHhHhcC
Q psy13373 232 DTSNAC--DIIRRYDVVVDACDNAPTRYLLNDACLREG 267 (525)
Q Consensus 232 ~~~~~~--~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~ 267 (525)
++.+.. .-+++++.||.++++.+....+-..+++.+
T Consensus 452 t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~ 489 (601)
T PRK03659 452 TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHF 489 (601)
T ss_pred CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHC
Confidence 544332 235789999999999888777777777653
No 294
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=91.42 E-value=1 Score=44.25 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=29.3
Q ss_pred HhhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 149 KLLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 149 kL~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
.|++++|+|.|+ |++|.++++.|+..|. ++.++|.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r 42 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGR 42 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeC
Confidence 367899999985 7899999999999998 5777654
No 295
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=91.41 E-value=0.85 Score=49.07 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=34.3
Q ss_pred cccccccCHHH----HHHhhcCcEEEEcCCcchHHHHHHhHHcCCceE
Q psy13373 136 QILLDQVGVMG----QEKLLNASVLIVGCGGTGSPCIQYLAASGVGTL 179 (525)
Q Consensus 136 q~~l~~~G~~~----q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i 179 (525)
|-++ |+.+. ...|++++|+|||+|.+|..-|.||--+|+..+
T Consensus 18 ~~r~--~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv 63 (487)
T PRK05225 18 KCRF--MDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDIS 63 (487)
T ss_pred ccee--cchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence 3445 55543 478999999999999999999999999999543
No 296
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.34 E-value=0.74 Score=50.54 Aligned_cols=35 Identities=31% Similarity=0.490 Sum_probs=30.6
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
+++++|+|+|+|+.|..+|+.|...|. +++..|..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~ 39 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADTR 39 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCC
Confidence 457789999999999999999999997 58887754
No 297
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.33 E-value=0.59 Score=47.70 Aligned_cols=34 Identities=24% Similarity=0.188 Sum_probs=29.4
Q ss_pred hcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeC
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
+..+|+|+|+|++|...+..+...|+..+.++|.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~ 177 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET 177 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 5668999999999999998888889998887754
No 298
>PLN02306 hydroxypyruvate reductase
Probab=91.33 E-value=0.79 Score=48.71 Aligned_cols=106 Identities=23% Similarity=0.307 Sum_probs=61.1
Q ss_pred HHhhcCcEEEEcCCcchHHHHHHhH-HcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCC-CcEEE
Q psy13373 148 EKLLNASVLIVGCGGTGSPCIQYLA-ASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINR-NTIVH 225 (525)
Q Consensus 148 ~kL~~~~VlViG~GglGs~ia~~La-~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp-~v~v~ 225 (525)
..|.+++|.|||+|.+|.++|+.|. ..|+ ++..+|+..- ..+.+ +. ...| ..+..... .+.+.
T Consensus 161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm-~V~~~d~~~~--~~~~~-~~---~~~~--------~~l~~~~~~~~~~~ 225 (386)
T PLN02306 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQS--TRLEK-FV---TAYG--------QFLKANGEQPVTWK 225 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECCCCc--hhhhh-hh---hhhc--------cccccccccccccc
Confidence 3589999999999999999999986 6677 4777775321 01100 00 0000 00000000 00010
Q ss_pred EeeecCCcchHhHhhccCCeEee-cCCCHHHHHHHHHHhH---hcCCcEEEec
Q psy13373 226 AYQTLLDTSNACDIIRRYDVVVD-ACDNAPTRYLLNDACL---REGRPLVSAS 274 (525)
Q Consensus 226 ~~~~~i~~~~~~~~~~~~dvVi~-~~d~~~~r~~l~~~~~---~~~~p~i~~~ 274 (525)
...+..++++.+|+|+. +--+.+++.+|++... +.+.-+|+.+
T Consensus 226 ------~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~a 272 (386)
T PLN02306 226 ------RASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNAS 272 (386)
T ss_pred ------ccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECC
Confidence 01246788999999886 4446677888876543 3345577764
No 299
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.32 E-value=0.9 Score=49.02 Aligned_cols=36 Identities=33% Similarity=0.587 Sum_probs=31.0
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
+.+++|+|+|.|+.|..+|+.|+..|. +++++|...
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~~ 38 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAEL 38 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 457899999999999999999999997 588887543
No 300
>PLN02206 UDP-glucuronate decarboxylase
Probab=91.30 E-value=0.81 Score=49.51 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=27.4
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
-++++|+|.|. |-+|+.+++.|...|.. +..+|.
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~~-V~~ld~ 151 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARGDS-VIVVDN 151 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCcCE-EEEEeC
Confidence 35678999995 66999999999999964 666654
No 301
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=91.25 E-value=0.43 Score=47.76 Aligned_cols=72 Identities=19% Similarity=0.254 Sum_probs=46.6
Q ss_pred EEEEcC-CcchHHHHHHhHHcC--C-ceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCC---CcEEEEe
Q psy13373 155 VLIVGC-GGTGSPCIQYLAASG--V-GTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINR---NTIVHAY 227 (525)
Q Consensus 155 VlViG~-GglGs~ia~~La~~G--V-g~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp---~v~v~~~ 227 (525)
|.|||+ |.+|+.++..|+..| . .+|.|+|.+. . |.+..+..|++... ..+++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~---~----------------~l~~~~~dl~~~~~~~~~~~i~~- 60 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE---E----------------KLKGVAMDLQDAVEPLADIKVSI- 60 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc---c----------------cchHHHHHHHHhhhhccCcEEEE-
Confidence 689999 889999999999998 4 6899998644 1 12223333433322 234432
Q ss_pred eecCCcchHhHhhccCCeEeecCC
Q psy13373 228 QTLLDTSNACDIIRRYDVVVDACD 251 (525)
Q Consensus 228 ~~~i~~~~~~~~~~~~dvVi~~~d 251 (525)
+. +..+.++++|+||.+..
T Consensus 61 ----~~-d~~~~~~~aDiVv~t~~ 79 (263)
T cd00650 61 ----TD-DPYEAFKDADVVIITAG 79 (263)
T ss_pred ----CC-chHHHhCCCCEEEECCC
Confidence 11 12456789999998653
No 302
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=91.23 E-value=1.1 Score=44.91 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=56.9
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEee
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQ 228 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 228 (525)
++.++++|-|+ +|+|-++|+.|++-|.. +.|+- | -+.|-+.+++.|+... .++++.++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~-liLva----------R---------~~~kL~~la~~l~~~~-~v~v~vi~ 62 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYN-LILVA----------R---------REDKLEALAKELEDKT-GVEVEVIP 62 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEe----------C---------cHHHHHHHHHHHHHhh-CceEEEEE
Confidence 56789999995 67999999999999976 44432 2 1246778888888877 78888888
Q ss_pred ecCCcchHhHhh--------ccCCeEeecC
Q psy13373 229 TLLDTSNACDII--------RRYDVVVDAC 250 (525)
Q Consensus 229 ~~i~~~~~~~~~--------~~~dvVi~~~ 250 (525)
.++++.+..+.+ ...|++|++.
T Consensus 63 ~DLs~~~~~~~l~~~l~~~~~~IdvLVNNA 92 (265)
T COG0300 63 ADLSDPEALERLEDELKERGGPIDVLVNNA 92 (265)
T ss_pred CcCCChhHHHHHHHHHHhcCCcccEEEECC
Confidence 777765432221 1477777654
No 303
>PRK08251 short chain dehydrogenase; Provisional
Probab=91.22 E-value=1.3 Score=43.18 Aligned_cols=79 Identities=19% Similarity=0.237 Sum_probs=50.8
Q ss_pred cCcEEEEc-CCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeec
Q psy13373 152 NASVLIVG-CGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTL 230 (525)
Q Consensus 152 ~~~VlViG-~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 230 (525)
+++|+|.| .||+|..+++.|+..|. ++.+++.+. .+.+.+...+.+.+|..++..+..+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D 61 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT-------------------DRLEELKAELLARYPGIKVAVAALD 61 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEEcC
Confidence 46789998 67799999999999995 677765531 2334455555666666677766666
Q ss_pred CCcch-HhHh-------hccCCeEeecC
Q psy13373 231 LDTSN-ACDI-------IRRYDVVVDAC 250 (525)
Q Consensus 231 i~~~~-~~~~-------~~~~dvVi~~~ 250 (525)
+++.. .... +...|+||.+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~id~vi~~a 89 (248)
T PRK08251 62 VNDHDQVFEVFAEFRDELGGLDRVIVNA 89 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 55432 1111 23567777544
No 304
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.20 E-value=0.72 Score=48.08 Aligned_cols=101 Identities=18% Similarity=0.191 Sum_probs=56.1
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecCC
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLD 232 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~ 232 (525)
.+|+|+|+|.+|+.++..|+..| +++++..+.-....++..-. .....+.. .++.+. +. .+
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~~~-~~~~l~~~---------~~l~~~--i~-----~t 68 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG--PTLQWVRSAETADDINDNHR-NSRYLGND---------VVLSDT--LR-----AT 68 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhcCC-CcccCCCC---------cccCCC--eE-----EE
Confidence 57999999999999999999998 45555433211111111100 00001000 000111 11 11
Q ss_pred cchHhHhhccCCeEeecCCCHHHHHHHHHHhH--hcCCcEEEe
Q psy13373 233 TSNACDIIRRYDVVVDACDNAPTRYLLNDACL--REGRPLVSA 273 (525)
Q Consensus 233 ~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~--~~~~p~i~~ 273 (525)
. +..+.+.++|+||.|+-+...+..+.++.. ..+.++|+.
T Consensus 69 ~-d~~~a~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl 110 (341)
T PRK12439 69 T-DFAEAANCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSL 110 (341)
T ss_pred C-CHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 1 233557889999999988888777776643 234456654
No 305
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=91.14 E-value=0.56 Score=49.60 Aligned_cols=99 Identities=19% Similarity=0.272 Sum_probs=65.3
Q ss_pred HHhhcCcEEEEcCCcchHHHHHHhHHcCCc--eEEEEeCCcccccCCCcccccCCCC--CCCcHHHHHHHHHHhhCCCcE
Q psy13373 148 EKLLNASVLIVGCGGTGSPCIQYLAASGVG--TLGLADYDRVELSNLHRQVIHTTHT--IGQPKVTSAKRFISAINRNTI 223 (525)
Q Consensus 148 ~kL~~~~VlViG~GglGs~ia~~La~~GVg--~i~lvD~d~V~~sNL~Rq~l~~~~d--iG~~Ka~~~~~~l~~lnp~v~ 223 (525)
++|++.+|++.|+|+-|..++..|..+|+. +|.++|.-=+=..+ .+| .++.|...+.+...+.. .
T Consensus 195 k~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~--------r~~~~~~~~k~~~a~~~~~~~~---~ 263 (432)
T COG0281 195 KKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDG--------REDLTMNQKKYAKAIEDTGERT---L 263 (432)
T ss_pred CCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCC--------CcccccchHHHHHHHhhhcccc---c
Confidence 588999999999999999999999999998 99999975321111 112 45566655543322221 0
Q ss_pred EEEeeecCCcchHhHhhccCCeEeecCCCHH-HHHHHHHHhHhcCCcEEEe
Q psy13373 224 VHAYQTLLDTSNACDIIRRYDVVVDACDNAP-TRYLLNDACLREGRPLVSA 273 (525)
Q Consensus 224 v~~~~~~i~~~~~~~~~~~~dvVi~~~d~~~-~r~~l~~~~~~~~~p~i~~ 273 (525)
.+.+.+.|++|-++..-. ...++.+++.. |+|..
T Consensus 264 -------------~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~---PiIfa 298 (432)
T COG0281 264 -------------DLALAGADVLIGVSGVGAFTEEMVKEMAKH---PIIFA 298 (432)
T ss_pred -------------cccccCCCEEEEcCCCCCcCHHHHHHhccC---CEEee
Confidence 114677899987766522 23455555433 77765
No 306
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.14 E-value=0.98 Score=46.58 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=27.6
Q ss_pred cEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
+|.|+|+|++|+.++..|+..| .++++++.+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g-~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK-ISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CeEEEEecCH
Confidence 6999999999999999999998 4578876643
No 307
>PRK08818 prephenate dehydrogenase; Provisional
Probab=91.11 E-value=0.92 Score=47.90 Aligned_cols=35 Identities=23% Similarity=0.132 Sum_probs=28.7
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
+...+|+|||+ |.+|..+++.|-...-.+|+.+|.
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~ 37 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP 37 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 45679999999 999999999999654446777876
No 308
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=90.97 E-value=1.1 Score=48.12 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=33.3
Q ss_pred cCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCc
Q psy13373 152 NASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHR 194 (525)
Q Consensus 152 ~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~R 194 (525)
-.+|.|||+|-+|..+|..|+..|. +++.+|.+.-....+++
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l~~ 44 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTINR 44 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHHHC
Confidence 3689999999999999999999994 68888876544333433
No 309
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=90.93 E-value=0.86 Score=42.31 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=28.7
Q ss_pred HHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 148 EKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 148 ~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
..|..++|+|+|.|-+|.-+|+.|...|. +++++|.|.
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DP 56 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDP 56 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSH
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECCh
Confidence 34788999999999999999999999995 478887776
No 310
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=90.90 E-value=0.5 Score=50.96 Aligned_cols=38 Identities=21% Similarity=0.415 Sum_probs=33.3
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCccc
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVE 188 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~ 188 (525)
+.+++|+|+|+|..|..+++.|.+.| -.+++.|.....
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~ 42 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAP 42 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCc
Confidence 44899999999999999999999999 668888876654
No 311
>PRK05866 short chain dehydrogenase; Provisional
Probab=90.89 E-value=1.1 Score=45.45 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=28.8
Q ss_pred HhhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 149 KLLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 149 kL~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
.+.+++|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 37 ~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R 72 (293)
T PRK05866 37 DLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVAR 72 (293)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence 366789999985 7899999999999997 5666654
No 312
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.84 E-value=0.91 Score=44.12 Aligned_cols=34 Identities=35% Similarity=0.594 Sum_probs=29.4
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
|++++++|+|+ |++|..+++.|+..|. ++.++|.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r 37 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDL 37 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 67889999997 8999999999999997 4777764
No 313
>PRK05867 short chain dehydrogenase; Provisional
Probab=90.81 E-value=1.2 Score=43.58 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=27.9
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEe
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLAD 183 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD 183 (525)
|++++|+|.|+ ||+|.++++.|+..|.. +.+++
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~-V~~~~ 40 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQ-VAIAA 40 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEc
Confidence 67889999996 78999999999999984 66654
No 314
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=90.73 E-value=1.5 Score=45.98 Aligned_cols=95 Identities=20% Similarity=0.218 Sum_probs=58.3
Q ss_pred cCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeec-
Q psy13373 152 NASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTL- 230 (525)
Q Consensus 152 ~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~- 230 (525)
..+|+|+|+|.+|--.+..+...|...|.++|.+. .|.+.+++. .. ..+......
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~-------------------~Rl~~A~~~----~g-~~~~~~~~~~ 224 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP-------------------ERLELAKEA----GG-ADVVVNPSED 224 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH-------------------HHHHHHHHh----CC-CeEeecCccc
Confidence 33899999999999999999999999999987644 233333321 11 111111100
Q ss_pred CCcchHhHhh--ccCCeEeecCCCHHHHHHHHHHhHhcCCcE
Q psy13373 231 LDTSNACDII--RRYDVVVDACDNAPTRYLLNDACLREGRPL 270 (525)
Q Consensus 231 i~~~~~~~~~--~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~ 270 (525)
.......+.- ..+|++|+|+.+........++++..|.-.
T Consensus 225 ~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~ 266 (350)
T COG1063 225 DAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVV 266 (350)
T ss_pred cHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 0001112222 359999999997776666666766666533
No 315
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.69 E-value=0.66 Score=49.97 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=30.5
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
+++++|+|+|.|++|..+|+.|+..|. ++.+.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 567899999999999999999999997 57877754
No 316
>PRK09186 flagellin modification protein A; Provisional
Probab=90.67 E-value=1.3 Score=43.35 Aligned_cols=33 Identities=30% Similarity=0.384 Sum_probs=27.0
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEe
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLAD 183 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD 183 (525)
|++++|+|.|+ |++|.++++.|+..|.. +.+++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~-v~~~~ 35 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGI-VIAAD 35 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEe
Confidence 46789999986 67999999999999975 55543
No 317
>PRK07478 short chain dehydrogenase; Provisional
Probab=90.66 E-value=1.1 Score=43.84 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=28.4
Q ss_pred HhhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 149 KLLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 149 kL~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
++++++++|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r 38 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGAR 38 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 356789999985 6799999999999998 4666544
No 318
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=90.63 E-value=1.3 Score=52.39 Aligned_cols=96 Identities=13% Similarity=0.105 Sum_probs=56.2
Q ss_pred hcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhC-CCcEEEEeee
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAIN-RNTIVHAYQT 229 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~ln-p~v~v~~~~~ 229 (525)
.+++|+|||+|.-|...|..|++.|. +++++|... .++-..-|.--+.-.+| +++.+.+..+. -.+++..-..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~----~~GG~l~yGIP~~rlp~-~vi~~~i~~l~~~Gv~f~~n~~ 378 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFH----DLGGVLRYGIPEFRLPN-QLIDDVVEKIKLLGGRFVKNFV 378 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCC----CCCceEEccCCCCcChH-HHHHHHHHHHHhhcCeEEEeEE
Confidence 47999999999999999999999997 599998642 23333223322233344 33333333321 1344433221
Q ss_pred cCCcchHhHhhc-cCCeEeecCCC
Q psy13373 230 LLDTSNACDIIR-RYDVVVDACDN 252 (525)
Q Consensus 230 ~i~~~~~~~~~~-~~dvVi~~~d~ 252 (525)
--..-...++.+ +||.||.|+..
T Consensus 379 vG~dit~~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 379 VGKTATLEDLKAAGFWKIFVGTGA 402 (944)
T ss_pred eccEEeHHHhccccCCEEEEeCCC
Confidence 101112344544 69999888776
No 319
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=90.57 E-value=0.6 Score=50.18 Aligned_cols=107 Identities=23% Similarity=0.226 Sum_probs=71.1
Q ss_pred cEEEEcCCcchH-HHHHHhHH----cCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEee
Q psy13373 154 SVLIVGCGGTGS-PCIQYLAA----SGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQ 228 (525)
Q Consensus 154 ~VlViG~GglGs-~ia~~La~----~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 228 (525)
||+|||+|+.-+ .+.+.|+. .++++|.|+|-|. +..|.. . ...+++.+++.++..+|+...
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~-v-----------~~~~~~~~~~~~~~~~v~~t~ 67 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEI-V-----------GALAKRMVKKAGLPIKVHLTT 67 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHH-H-----------HHHHHHHHHhhCCCeEEEEeC
Confidence 799999999765 56667665 5789999999885 333332 1 345666677777777776543
Q ss_pred ecCCcchHhHhhccCCeEeecCCCH--HHHHHHHHHhHhcCCcEEEecccCccceE
Q psy13373 229 TLLDTSNACDIIRRYDVVVDACDNA--PTRYLLNDACLREGRPLVSASALGLEGQL 282 (525)
Q Consensus 229 ~~i~~~~~~~~~~~~dvVi~~~d~~--~~r~~l~~~~~~~~~p~i~~~~~g~~G~v 282 (525)
. ..+.+.++|+||.+.--. +.|..-.++..++|+ +-..+.|..|..
T Consensus 68 d------~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi--~gqET~G~GG~~ 115 (419)
T cd05296 68 D------RREALEGADFVFTQIRVGGLEARALDERIPLKHGV--IGQETTGAGGFA 115 (419)
T ss_pred C------HHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCC--ccccCCCcchHH
Confidence 2 467889999999765432 344444556677775 335666666643
No 320
>PRK06194 hypothetical protein; Provisional
Probab=90.57 E-value=0.97 Score=45.20 Aligned_cols=35 Identities=31% Similarity=0.376 Sum_probs=28.9
Q ss_pred HhhcCcEEEEc-CCcchHHHHHHhHHcCCceEEEEeC
Q psy13373 149 KLLNASVLIVG-CGGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 149 kL~~~~VlViG-~GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
.+++++|+|.| .|++|.++++.|+..|. +++++|.
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r 38 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGM-KLVLADV 38 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence 35678899998 47799999999999997 5777765
No 321
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=90.51 E-value=1.4 Score=37.97 Aligned_cols=86 Identities=17% Similarity=0.277 Sum_probs=53.7
Q ss_pred cEEEEcCCcchHHHHHHhHHc--CCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecC
Q psy13373 154 SVLIVGCGGTGSPCIQYLAAS--GVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLL 231 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~--GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i 231 (525)
||+|||+|..|...+..+... ++.-..++|.+. .+++.+ .+.+ .+. .+.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~-------------------~~~~~~----~~~~-~~~--~~~--- 52 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDP-------------------ERAEAF----AEKY-GIP--VYT--- 52 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSH-------------------HHHHHH----HHHT-TSE--EES---
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCH-------------------HHHHHH----HHHh-ccc--chh---
Confidence 799999999999999999887 343334555542 222222 2222 222 211
Q ss_pred CcchHhHhhc--cCCeEeecCCCHHHHHHHHHHhHhcCCcEEE
Q psy13373 232 DTSNACDIIR--RYDVVVDACDNAPTRYLLNDACLREGRPLVS 272 (525)
Q Consensus 232 ~~~~~~~~~~--~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~ 272 (525)
+..++++ +.|+|+.++.+ .....+...|.+.|++++.
T Consensus 53 ---~~~~ll~~~~~D~V~I~tp~-~~h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 53 ---DLEELLADEDVDAVIIATPP-SSHAEIAKKALEAGKHVLV 91 (120)
T ss_dssp ---SHHHHHHHTTESEEEEESSG-GGHHHHHHHHHHTTSEEEE
T ss_pred ---HHHHHHHhhcCCEEEEecCC-cchHHHHHHHHHcCCEEEE
Confidence 1345555 68888887765 4566677777888886654
No 322
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=90.51 E-value=0.29 Score=52.55 Aligned_cols=40 Identities=28% Similarity=0.384 Sum_probs=35.8
Q ss_pred cchhHHHHHHHHHHHHHHHhCC-CCCCeEEEEEcCCCeeEE
Q psy13373 316 GPVPGVMGTLQAVETIKLLIGL-PVMDKLLVYDAELSKFLS 355 (525)
Q Consensus 316 ~~~~~ivg~~~a~e~lk~l~g~-~~l~~~~~~d~~~~~~~~ 355 (525)
.++++++|+++|+|+||+++.. -|+++.++||+.+.+..+
T Consensus 384 ~~~~~~~gg~~aqE~iK~~t~q~vp~~n~~i~dg~~~~s~~ 424 (425)
T cd01493 384 HNISAFMGGIAAQEVIKLITKQYVPIDNTFIFDGIRSKSAT 424 (425)
T ss_pred chHHHHHhHHHHHHHHHHHhccccccCCceEEeccccceec
Confidence 6888999999999999999998 777999999999876654
No 323
>PRK06125 short chain dehydrogenase; Provisional
Probab=90.46 E-value=1.4 Score=43.30 Aligned_cols=35 Identities=37% Similarity=0.532 Sum_probs=29.8
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
|++++|+|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~ 40 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARD 40 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 67789999997 6799999999999998 78876553
No 324
>PRK08339 short chain dehydrogenase; Provisional
Probab=90.37 E-value=1.4 Score=43.71 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=28.4
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
|++++++|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r 40 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSR 40 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 67788999986 6799999999999997 4777654
No 325
>PRK06949 short chain dehydrogenase; Provisional
Probab=90.32 E-value=1.4 Score=43.07 Aligned_cols=34 Identities=32% Similarity=0.439 Sum_probs=28.4
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
+.+++|+|.|. |++|..+++.|+..|. ++++++.
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r 41 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASR 41 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 56789999985 7899999999999998 4666543
No 326
>PRK06046 alanine dehydrogenase; Validated
Probab=90.25 E-value=1.3 Score=45.98 Aligned_cols=75 Identities=13% Similarity=0.149 Sum_probs=52.0
Q ss_pred hcCcEEEEcCCcchHHHHHHhHH-cCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeee
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAA-SGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQT 229 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~-~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~ 229 (525)
...+|.|||+|+.|...+.+|.. .++..+.++|.+. .|++.+++.+.+.. .+.+..+.
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~-------------------~~~~~~~~~~~~~~-~~~v~~~~- 186 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTK-------------------SSAEKFVERMSSVV-GCDVTVAE- 186 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCH-------------------HHHHHHHHHHHhhc-CceEEEeC-
Confidence 35789999999999999999984 4888898876543 45556666665432 23343322
Q ss_pred cCCcchHhHhhccCCeEeecCCC
Q psy13373 230 LLDTSNACDIIRRYDVVVDACDN 252 (525)
Q Consensus 230 ~i~~~~~~~~~~~~dvVi~~~d~ 252 (525)
+..+.+. +|+|+.||-+
T Consensus 187 -----~~~~~l~-aDiVv~aTps 203 (326)
T PRK06046 187 -----DIEEACD-CDILVTTTPS 203 (326)
T ss_pred -----CHHHHhh-CCEEEEecCC
Confidence 2345565 9999999876
No 327
>PRK05872 short chain dehydrogenase; Provisional
Probab=90.24 E-value=1.8 Score=43.91 Aligned_cols=34 Identities=32% Similarity=0.514 Sum_probs=28.9
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
|++++|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r 41 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGA-KLALVDL 41 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 67889999985 7799999999999998 5777654
No 328
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=90.24 E-value=1.3 Score=45.21 Aligned_cols=109 Identities=16% Similarity=0.189 Sum_probs=61.7
Q ss_pred cEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecCCc
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDT 233 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~ 233 (525)
+|.+||+|-+|..++.+|+..|. +++++|.+. +. ..+ .+.|-..+....+.++ ..++-+...+..
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~----~~--~~~---~~~g~~~~~s~~~~~~--~advVi~~v~~~--- 66 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGP----VA--DEL---LSLGAVSVETARQVTE--ASDIIFIMVPDT--- 66 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCH----hH--HHH---HHcCCeecCCHHHHHh--cCCEEEEeCCCh---
Confidence 69999999999999999999996 677887643 11 111 1123222222222221 234444443322
Q ss_pred chHhHh----------hccCCeEeecCCC-HHHHHHHHHHhHhcCCcEEEecccC
Q psy13373 234 SNACDI----------IRRYDVVVDACDN-APTRYLLNDACLREGRPLVSASALG 277 (525)
Q Consensus 234 ~~~~~~----------~~~~dvVi~~~d~-~~~r~~l~~~~~~~~~p~i~~~~~g 277 (525)
....+. +..-.+||+++.. +.....+.+.+..+|..++++-+.|
T Consensus 67 ~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsG 121 (292)
T PRK15059 67 PQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSG 121 (292)
T ss_pred HHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 111111 1223567765543 4445567777888888888875444
No 329
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=90.22 E-value=0.16 Score=52.49 Aligned_cols=79 Identities=16% Similarity=0.103 Sum_probs=53.7
Q ss_pred ChhhhHHHHHhcCCCcEEEecCChhhhhcCCCCCeEEeChhhHHHHHhhcCCchHHHHhhhhhcCCCCeEEEEcCc--Ch
Q psy13373 403 TALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRR--GN 480 (525)
Q Consensus 403 s~~el~~~~l~~~~~~~lIDVR~~~E~~~ghIpGAinip~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~Ivv~C~~--G~ 480 (525)
+++++.+. +... ..++|+|....|+.+||||++|+|...+... +.++... ...+++++.-.. +.
T Consensus 17 ~~~~~~~~-l~~~--~~~~d~rg~i~~a~egIngtis~~~~~~~~~----------~~~l~~~-~~~~~i~l~~~~~~~~ 82 (314)
T PRK00142 17 DPEAFRDE-HLAL--CKSLGLKGRILVAEEGINGTVSGTIEQTEAY----------MAWLKAD-PRFADIRFKISEDDGH 82 (314)
T ss_pred CHHHHHHH-HHHH--HHHcCCeeEEEEcCCCceEEEEecHHHHHHH----------HHHHhhC-cCCCCceEEeccccCC
Confidence 46788877 7653 5689999999999999999999999766665 5555421 124555555433 12
Q ss_pred H----HHHHHHHHHHccCC
Q psy13373 481 D----SQKVVQLLKRYVER 495 (525)
Q Consensus 481 r----S~~aa~~L~~~G~~ 495 (525)
. +..+...|..+|++
T Consensus 83 ~f~~l~~~~~~eLv~~G~d 101 (314)
T PRK00142 83 AFPRLSVKVRKEIVALGLD 101 (314)
T ss_pred CcccceeeeeeeeeecCCC
Confidence 2 24566666677774
No 330
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=90.21 E-value=1.5 Score=45.41 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=29.9
Q ss_pred hcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeC
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
.+.+|+|+|+|++|...+..+...|++++.++|.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~ 202 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV 202 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence 5789999999999999999888899988887754
No 331
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=90.14 E-value=2 Score=43.50 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=26.3
Q ss_pred cEEEEcC-CcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 154 SVLIVGC-GGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 154 ~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
+|+|.|. |.+|+.+++.|+..|. +++.+|..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~ 33 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRP 33 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC-EEEEEEec
Confidence 6899985 7899999999999995 68877754
No 332
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.12 E-value=0.46 Score=54.60 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=29.6
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
++|.|||+|..|+.||..++.+|. .++|+|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCH
Confidence 579999999999999999999997 689998653
No 333
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.10 E-value=1.7 Score=49.31 Aligned_cols=95 Identities=18% Similarity=0.277 Sum_probs=54.6
Q ss_pred hcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHH--HHHHHHHHhhCCCcEEEEee
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKV--TSAKRFISAINRNTIVHAYQ 228 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka--~~~~~~l~~lnp~v~v~~~~ 228 (525)
.+++|+|||.|..|...|..|++.|. +++++|.... +....-+.-...-.+|. +...+.++++ .+++....
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~----~GG~l~~gip~~~l~~~~~~~~~~~~~~~--Gv~~~~~~ 381 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPE----IGGMLTFGIPPFKLDKTVLSQRREIFTAM--GIDFHLNC 381 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCC----CCCeeeccCCcccCCHHHHHHHHHHHHHC--CeEEEcCC
Confidence 47899999999999999999999998 5999886541 12111111111112222 2223344443 34433222
Q ss_pred ecCC-cchHhHhhccCCeEeecCCCH
Q psy13373 229 TLLD-TSNACDIIRRYDVVVDACDNA 253 (525)
Q Consensus 229 ~~i~-~~~~~~~~~~~dvVi~~~d~~ 253 (525)
. +. +....++...||.||.++...
T Consensus 382 ~-v~~~~~~~~l~~~~DaV~latGa~ 406 (639)
T PRK12809 382 E-IGRDITFSDLTSEYDAVFIGVGTY 406 (639)
T ss_pred c-cCCcCCHHHHHhcCCEEEEeCCCC
Confidence 1 11 112334556899999888764
No 334
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.06 E-value=1.5 Score=36.94 Aligned_cols=71 Identities=14% Similarity=0.171 Sum_probs=50.8
Q ss_pred cHHHHHHHHHHhhCCCcEEEEe--eecCCcch--HhHhhccCCeEeecCCCH--HHHHHHHHHhHhcCCcEEEecccCc
Q psy13373 206 PKVTSAKRFISAINRNTIVHAY--QTLLDTSN--ACDIIRRYDVVVDACDNA--PTRYLLNDACLREGRPLVSASALGL 278 (525)
Q Consensus 206 ~Ka~~~~~~l~~lnp~v~v~~~--~~~i~~~~--~~~~~~~~dvVi~~~d~~--~~r~~l~~~~~~~~~p~i~~~~~g~ 278 (525)
......++.+++.+ .+...+ +....... ....++++|+||..+|.. .....+-+.|.+.++|++.+...|.
T Consensus 10 ~~~~~~~~~~~~~G--~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~ 86 (97)
T PF10087_consen 10 DRERRYKRILEKYG--GKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGV 86 (97)
T ss_pred ccHHHHHHHHHHcC--CEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 44566677777754 555566 33333333 667889999999888865 4677799999999999999876554
No 335
>PLN02928 oxidoreductase family protein
Probab=90.03 E-value=0.22 Score=52.18 Aligned_cols=104 Identities=21% Similarity=0.286 Sum_probs=61.0
Q ss_pred HHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEe
Q psy13373 148 EKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAY 227 (525)
Q Consensus 148 ~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~ 227 (525)
..|.+++|+|||+|.+|.++|+.|...|. ++..+|+.. . +.. ....|.+ .+.+....
T Consensus 155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~-~-----~~~---~~~~~~~------------~~~~~~~~- 211 (347)
T PLN02928 155 DTLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSW-T-----SEP---EDGLLIP------------NGDVDDLV- 211 (347)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC-C-----hhh---hhhhccc------------cccccccc-
Confidence 45899999999999999999999999998 677776521 0 000 0000000 00000000
Q ss_pred eecCCcchHhHhhccCCeEeecCC-CHHHHHHHHHHh---HhcCCcEEEec
Q psy13373 228 QTLLDTSNACDIIRRYDVVVDACD-NAPTRYLLNDAC---LREGRPLVSAS 274 (525)
Q Consensus 228 ~~~i~~~~~~~~~~~~dvVi~~~d-~~~~r~~l~~~~---~~~~~p~i~~~ 274 (525)
.......+..++++.+|+|+.++- +.+++.++++.. .+.+.-+|+.+
T Consensus 212 ~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINva 262 (347)
T PLN02928 212 DEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIA 262 (347)
T ss_pred cccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECC
Confidence 000122346789999999987654 455677776543 23344466654
No 336
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=90.01 E-value=1.6 Score=45.47 Aligned_cols=72 Identities=22% Similarity=0.360 Sum_probs=46.5
Q ss_pred cCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecC
Q psy13373 152 NASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLL 231 (525)
Q Consensus 152 ~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i 231 (525)
..+|+|+|+||||.-.++....+| -+++.+| ++..|.+.++ ++--+.-+.. .
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~-------------------~~~~K~e~a~----~lGAd~~i~~---~- 218 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAIT-------------------RSEEKLELAK----KLGADHVINS---S- 218 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEe-------------------CChHHHHHHH----HhCCcEEEEc---C-
Confidence 579999999999999999988899 6677654 3445655555 3333333322 2
Q ss_pred CcchHhHhhccCCeEeecCC
Q psy13373 232 DTSNACDIIRRYDVVVDACD 251 (525)
Q Consensus 232 ~~~~~~~~~~~~dvVi~~~d 251 (525)
+++.....-+.+|+||++..
T Consensus 219 ~~~~~~~~~~~~d~ii~tv~ 238 (339)
T COG1064 219 DSDALEAVKEIADAIIDTVG 238 (339)
T ss_pred CchhhHHhHhhCcEEEECCC
Confidence 22222222233999999877
No 337
>PRK06436 glycerate dehydrogenase; Provisional
Probab=89.99 E-value=0.2 Score=51.49 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=34.1
Q ss_pred cCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 142 VGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 142 ~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
|.......|.+++|.|+|+|.+|.++|+.|...|+ ++..+|..
T Consensus 112 w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~ 154 (303)
T PRK06436 112 FKQSPTKLLYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRS 154 (303)
T ss_pred CCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 44333357999999999999999999998887788 57777653
No 338
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=89.98 E-value=1.2 Score=43.27 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=28.6
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
|++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r 37 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGR 37 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence 67889999997 6799999999999998 5666543
No 339
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.98 E-value=1 Score=46.11 Aligned_cols=77 Identities=18% Similarity=0.319 Sum_probs=56.3
Q ss_pred HhhcCcEEEEcCC-cchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEe
Q psy13373 149 KLLNASVLIVGCG-GTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAY 227 (525)
Q Consensus 149 kL~~~~VlViG~G-glGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~ 227 (525)
.+++++|+|||.| -+|..++.+|...|. .+++++..+
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~~t----------------------------------------- 193 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHSRS----------------------------------------- 193 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECCCC-----------------------------------------
Confidence 5789999999997 799999999999996 577764321
Q ss_pred eecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEeccc
Q psy13373 228 QTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASAL 276 (525)
Q Consensus 228 ~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~ 276 (525)
.+..+..+.+|+||.++.... .+.....+.|.-+|+.++.
T Consensus 194 ------~~l~e~~~~ADIVIsavg~~~---~v~~~~ik~GaiVIDvgin 233 (301)
T PRK14194 194 ------TDAKALCRQADIVVAAVGRPR---LIDADWLKPGAVVIDVGIN 233 (301)
T ss_pred ------CCHHHHHhcCCEEEEecCChh---cccHhhccCCcEEEEeccc
Confidence 024567788999999887753 2333335666777887654
No 340
>PRK06138 short chain dehydrogenase; Provisional
Probab=89.97 E-value=1.7 Score=42.35 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=27.9
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
|++++++|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r 37 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADR 37 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecC
Confidence 57889999986 6799999999999996 4666543
No 341
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=89.96 E-value=4.5 Score=39.19 Aligned_cols=94 Identities=17% Similarity=0.237 Sum_probs=59.1
Q ss_pred EEEEcC-CcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecC-C
Q psy13373 155 VLIVGC-GGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLL-D 232 (525)
Q Consensus 155 VlViG~-GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i-~ 232 (525)
|+|+|+ |.+|..++..|...|.. ++++ .+.. .....+.++.. .+.+. .... +
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~-V~~l---------------~R~~------~~~~~~~l~~~--g~~vv--~~d~~~ 54 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFS-VRAL---------------VRDP------SSDRAQQLQAL--GAEVV--EADYDD 54 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGC-EEEE---------------ESSS------HHHHHHHHHHT--TTEEE--ES-TT-
T ss_pred CEEECCccHHHHHHHHHHHhCCCC-cEEE---------------Eecc------chhhhhhhhcc--cceEe--ecccCC
Confidence 789996 77999999999996654 5442 1111 22233344443 45544 3333 3
Q ss_pred cchHhHhhccCCeEeecCCCH-----HHHHHHHHHhHhcCCcEEEec
Q psy13373 233 TSNACDIIRRYDVVVDACDNA-----PTRYLLNDACLREGRPLVSAS 274 (525)
Q Consensus 233 ~~~~~~~~~~~dvVi~~~d~~-----~~r~~l~~~~~~~~~p~i~~~ 274 (525)
.+...+.++++|.|+.++... .....+-+.|.+.|++.+.-+
T Consensus 55 ~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~s 101 (233)
T PF05368_consen 55 PESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPS 101 (233)
T ss_dssp HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEES
T ss_pred HHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEE
Confidence 445677899999999888832 234457788889888876543
No 342
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=89.93 E-value=1.9 Score=46.67 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=27.3
Q ss_pred hcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 151 LNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 151 ~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
+..+|+|.|. |-+|+++++.|...|. +++.+|..
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~ 153 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNF 153 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 3458999996 5599999999999986 57777754
No 343
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=89.85 E-value=0.83 Score=47.33 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=49.7
Q ss_pred CcEEEEcC-CcchHHHHHHhHHcCC-c-----eEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhC-CCcEE
Q psy13373 153 ASVLIVGC-GGTGSPCIQYLAASGV-G-----TLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAIN-RNTIV 224 (525)
Q Consensus 153 ~~VlViG~-GglGs~ia~~La~~GV-g-----~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~ln-p~v~v 224 (525)
.||.|||+ |.+|+.+|..|+..|+ + +|.|+|-.. .+.|++..+.-|.... |...
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~-----------------~~~~a~g~a~Dl~~~~~~~~~- 65 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPP-----------------AMKALEGVAMELEDCAFPLLA- 65 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCC-----------------cccccchHHHHHhhccccccC-
Confidence 48999998 9999999999999886 4 688876521 1123444444444444 3322
Q ss_pred EEeeecCCcchHhHhhccCCeEeecCCC
Q psy13373 225 HAYQTLLDTSNACDIIRRYDVVVDACDN 252 (525)
Q Consensus 225 ~~~~~~i~~~~~~~~~~~~dvVi~~~d~ 252 (525)
.. .+.. ...+.++++|+||.+...
T Consensus 66 ~~---~i~~-~~~~~~~daDvVVitAG~ 89 (323)
T TIGR01759 66 GV---VATT-DPEEAFKDVDAALLVGAF 89 (323)
T ss_pred Cc---EEec-ChHHHhCCCCEEEEeCCC
Confidence 00 1221 235678999999876554
No 344
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=89.83 E-value=1.9 Score=48.21 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=31.1
Q ss_pred hcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
.+.+|+|||+|..|-..|..|++.|. +++++|...
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~ 170 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGP 170 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 56899999999999999999999998 599998643
No 345
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=89.83 E-value=1.8 Score=36.31 Aligned_cols=90 Identities=16% Similarity=0.250 Sum_probs=52.6
Q ss_pred hcCcEEEEcCCcchHHHHHHhH-HcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeee
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLA-ASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQT 229 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La-~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~ 229 (525)
+..+|+|+|+|++|..++.++- ..|.+-..++|.|. ..+.+.+. .+.|. .
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~---~~~G~~i~-----------------------gipV~--~- 52 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDP---EKIGKEIG-----------------------GIPVY--G- 52 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECT---TTTTSEET-----------------------TEEEE--S-
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCC---CccCcEEC-----------------------CEEee--c-
Confidence 3568999999999998885444 55888888887654 22222211 22222 1
Q ss_pred cCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEe
Q psy13373 230 LLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSA 273 (525)
Q Consensus 230 ~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~ 273 (525)
.-+...+.+ +.|+.|.|......+..+.++ .+.++..|..
T Consensus 53 --~~~~l~~~~-~i~iaii~VP~~~a~~~~~~~-~~~gIk~i~n 92 (96)
T PF02629_consen 53 --SMDELEEFI-EIDIAIITVPAEAAQEVADEL-VEAGIKGIVN 92 (96)
T ss_dssp --SHHHHHHHC-TTSEEEEES-HHHHHHHHHHH-HHTT-SEEEE
T ss_pred --cHHHhhhhh-CCCEEEEEcCHHHHHHHHHHH-HHcCCCEEEE
Confidence 111233334 489888887554455444444 4578876654
No 346
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.82 E-value=1.2 Score=43.23 Aligned_cols=36 Identities=33% Similarity=0.452 Sum_probs=29.9
Q ss_pred HhhcCcEEEEc-CCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 149 KLLNASVLIVG-CGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 149 kL~~~~VlViG-~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
.+++++|+|.| .|++|..+++.|+..|. ++.+++.+
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~ 40 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLART 40 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 45678899998 55799999999999998 78887654
No 347
>PRK06181 short chain dehydrogenase; Provisional
Probab=89.80 E-value=1.6 Score=43.03 Aligned_cols=31 Identities=35% Similarity=0.440 Sum_probs=26.2
Q ss_pred CcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 153 ASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 153 ~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
++|+|.|+ |++|.++++.|+..|. +++++|.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r 33 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-QLVLAAR 33 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 57899987 7799999999999996 6777664
No 348
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=89.76 E-value=0.74 Score=47.23 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=28.2
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
++|.|||+|-.|+-||..++.+|. .++++|..
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGY-DVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCC-ceEEEeCC
Confidence 689999999999999999999664 58888876
No 349
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=89.76 E-value=0.67 Score=48.05 Aligned_cols=90 Identities=13% Similarity=0.115 Sum_probs=55.3
Q ss_pred HhhcCcEEEEcCCcchHHHHHHhH-HcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEe
Q psy13373 149 KLLNASVLIVGCGGTGSPCIQYLA-ASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAY 227 (525)
Q Consensus 149 kL~~~~VlViG~GglGs~ia~~La-~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~ 227 (525)
.|.+++|.|||+|.+|.++|+.|. ..|+. +..+|+-. +.+.. .+. ++.
T Consensus 142 ~L~gktvGIiG~G~IG~~va~~l~~~fgm~-V~~~~~~~--------------------~~~~~----~~~--~~~---- 190 (323)
T PRK15409 142 DVHHKTLGIVGMGRIGMALAQRAHFGFNMP-ILYNARRH--------------------HKEAE----ERF--NAR---- 190 (323)
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHhcCCCE-EEEECCCC--------------------chhhH----Hhc--CcE----
Confidence 689999999999999999999987 55663 54544310 00000 011 111
Q ss_pred eecCCcchHhHhhccCCeEeec-CCCHHHHHHHHHHhH---hcCCcEEEec
Q psy13373 228 QTLLDTSNACDIIRRYDVVVDA-CDNAPTRYLLNDACL---REGRPLVSAS 274 (525)
Q Consensus 228 ~~~i~~~~~~~~~~~~dvVi~~-~d~~~~r~~l~~~~~---~~~~p~i~~~ 274 (525)
.....++++.+|+|+.+ -.+.+++.++++.-. +.+.-+|+.+
T Consensus 191 -----~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~a 236 (323)
T PRK15409 191 -----YCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAG 236 (323)
T ss_pred -----ecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECC
Confidence 11256788999988754 445667777766532 3344466653
No 350
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=89.75 E-value=1.5 Score=45.92 Aligned_cols=113 Identities=12% Similarity=0.179 Sum_probs=62.9
Q ss_pred HHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceE--EEEeCCc--ccccCCCcccccCCCCC---CC-cHHHHHHHHHHh
Q psy13373 146 GQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTL--GLADYDR--VELSNLHRQVIHTTHTI---GQ-PKVTSAKRFISA 217 (525)
Q Consensus 146 ~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i--~lvD~d~--V~~sNL~Rq~l~~~~di---G~-~Ka~~~~~~l~~ 217 (525)
.|+--.+.+|.|||+||-|+.++..|.+.|+..+ ..+|.|. ++.+...+.+++..+.. |. ..-+..++...+
T Consensus 11 ~~~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~L~~~~a~~ki~iG~~~t~G~GaG~~~~~G~~~aee 90 (349)
T TIGR00065 11 LIQPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQHLKTTKADKKILIGKKLTRGLGAGGNPEIGRKAAEE 90 (349)
T ss_pred hcCcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCeEEEcCCCCCCCCCCCCCHHHHHHHHHH
Confidence 3433455789999999999999999999998644 5578876 33333333344433211 10 001111111111
Q ss_pred hCCCcEEEEeeecCCcchHhHhhccCCeEeec------CCCHHHHHHHHHHhHhcCCcEEEe
Q psy13373 218 INRNTIVHAYQTLLDTSNACDIIRRYDVVVDA------CDNAPTRYLLNDACLREGRPLVSA 273 (525)
Q Consensus 218 lnp~v~v~~~~~~i~~~~~~~~~~~~dvVi~~------~d~~~~r~~l~~~~~~~~~p~i~~ 273 (525)
. .+...+.++++|.|+.+ |.+- .-..+.+++++.+++.+..
T Consensus 91 ~--------------~d~Ir~~le~~D~vfI~aglGGGTGSG-~apvia~~ake~~~l~vai 137 (349)
T TIGR00065 91 S--------------RDEIRKLLEGADMVFITAGMGGGTGTG-AAPVVAKIAKELGALTVAV 137 (349)
T ss_pred H--------------HHHHHHHHhCCCEEEEEEeccCccchh-HHHHHHHHHHHcCCCEEEE
Confidence 0 01133456678877632 2222 2447888888887766554
No 351
>PLN02253 xanthoxin dehydrogenase
Probab=89.71 E-value=1.8 Score=43.17 Aligned_cols=35 Identities=23% Similarity=0.519 Sum_probs=28.5
Q ss_pred HhhcCcEEEEc-CCcchHHHHHHhHHcCCceEEEEeC
Q psy13373 149 KLLNASVLIVG-CGGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 149 kL~~~~VlViG-~GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
+|++++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~ 50 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDL 50 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 46788999998 56799999999999997 4666653
No 352
>PRK12939 short chain dehydrogenase; Provisional
Probab=89.67 E-value=1.7 Score=42.19 Aligned_cols=33 Identities=27% Similarity=0.495 Sum_probs=27.3
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEe
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLAD 183 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD 183 (525)
+++++|+|.|+ |++|.++++.|+..|.. +.+++
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~ 38 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGAT-VAFND 38 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEe
Confidence 66789999985 78999999999999975 55543
No 353
>PLN02852 ferredoxin-NADP+ reductase
Probab=89.67 E-value=1.6 Score=47.93 Aligned_cols=96 Identities=18% Similarity=0.175 Sum_probs=54.1
Q ss_pred hcCcEEEEcCCcchHHHHHHhHH--cCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhh--CCCcEEEE
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAA--SGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAI--NRNTIVHA 226 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~--~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~l--np~v~v~~ 226 (525)
...+|+|||.|.-|.+.|..|++ .|. +++|+|... .+--+.|.-.. + +--..| .+.+.+.++ .+.+++..
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p-~pgGlvr~gva-P-~~~~~k--~v~~~~~~~~~~~~v~~~~ 98 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLP-TPFGLVRSGVA-P-DHPETK--NVTNQFSRVATDDRVSFFG 98 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCC-CCcceEeeccC-C-CcchhH--HHHHHHHHHHHHCCeEEEc
Confidence 35689999999999999999997 464 699999776 23444442211 1 111222 222222221 13343321
Q ss_pred eeecCC-cchHhHhhccCCeEeecCCCH
Q psy13373 227 YQTLLD-TSNACDIIRRYDVVVDACDNA 253 (525)
Q Consensus 227 ~~~~i~-~~~~~~~~~~~dvVi~~~d~~ 253 (525)
+..+. +-...++...||.||.++...
T Consensus 99 -nv~vg~dvtl~~L~~~yDaVIlAtGa~ 125 (491)
T PLN02852 99 -NVTLGRDVSLSELRDLYHVVVLAYGAE 125 (491)
T ss_pred -CEEECccccHHHHhhhCCEEEEecCCC
Confidence 11111 112445566899998877754
No 354
>PRK12862 malic enzyme; Reviewed
Probab=89.67 E-value=0.88 Score=52.43 Aligned_cols=39 Identities=18% Similarity=0.444 Sum_probs=35.7
Q ss_pred HHhhcCcEEEEcCCcchHHHHHHhHHcCCc--eEEEEeCCc
Q psy13373 148 EKLLNASVLIVGCGGTGSPCIQYLAASGVG--TLGLADYDR 186 (525)
Q Consensus 148 ~kL~~~~VlViG~GglGs~ia~~La~~GVg--~i~lvD~d~ 186 (525)
++|++.||++.|+|+.|..+++.|...|+. +|.++|..=
T Consensus 189 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G 229 (763)
T PRK12862 189 KDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKG 229 (763)
T ss_pred CChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCC
Confidence 688999999999999999999999999995 999999654
No 355
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=89.65 E-value=1.7 Score=42.53 Aligned_cols=35 Identities=26% Similarity=0.460 Sum_probs=28.9
Q ss_pred HhhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 149 KLLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 149 kL~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
++++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r 39 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGA-AVAIADL 39 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeC
Confidence 366789999987 7899999999999998 4666654
No 356
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.63 E-value=1.2 Score=48.12 Aligned_cols=34 Identities=26% Similarity=0.544 Sum_probs=29.3
Q ss_pred hcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
++..|+|+|+|+.|..+|+.|...|. +++..|..
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~ 38 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDSR 38 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeCC
Confidence 45689999999999999999999997 58887743
No 357
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=89.62 E-value=1.2 Score=45.21 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=26.6
Q ss_pred cEEEEcCCcchHHHHHHhHHcCCceEEEEeC
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
+|+|+|+|++|+.++..|+..|. ++++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 69999999999999999999985 5787764
No 358
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=89.58 E-value=1.5 Score=45.60 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=28.6
Q ss_pred hcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeC
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
.+.+|+|+|+|++|..++..+...|+ ++.+++.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence 57899999999999999998888999 5777665
No 359
>PRK07814 short chain dehydrogenase; Provisional
Probab=89.58 E-value=1.8 Score=42.85 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=29.5
Q ss_pred hhcCcEEEEcCC-cchHHHHHHhHHcCCceEEEEeCC
Q psy13373 150 LLNASVLIVGCG-GTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 150 L~~~~VlViG~G-glGs~ia~~La~~GVg~i~lvD~d 185 (525)
+++++|+|.|.+ ++|.++++.|+..|. ++.+++.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~ 43 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAART 43 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 677899999865 699999999999998 78777654
No 360
>PRK09330 cell division protein FtsZ; Validated
Probab=89.58 E-value=2.7 Score=44.55 Aligned_cols=111 Identities=13% Similarity=0.171 Sum_probs=65.1
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCc--eEEEEeCCc--ccccCCCcccccCCCCC---CC-cHHHHHHHHHHhhCCC
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVG--TLGLADYDR--VELSNLHRQVIHTTHTI---GQ-PKVTSAKRFISAINRN 221 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg--~i~lvD~d~--V~~sNL~Rq~l~~~~di---G~-~Ka~~~~~~l~~lnp~ 221 (525)
....+|.|||+||-|+.++.+|...|+. ++..++.|. +..+...+-+++...-. |- ..-++.++...+.
T Consensus 11 ~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~q~L~~~~a~~ki~lG~~~t~GlGaG~~pe~G~~aaee~--- 87 (384)
T PRK09330 11 NQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSKAPVKIQLGEKLTRGLGAGANPEVGRKAAEES--- 87 (384)
T ss_pred ccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcHHHHhcCCCCeEEEcCCcccccCCCCCCHHHHHHHHHHH---
Confidence 4467899999999999999999999876 566677766 33344333343332111 00 1111222221110
Q ss_pred cEEEEeeecCCcchHhHhhccCCeEeecCC------CHHHHHHHHHHhHhcCCcEEEecc
Q psy13373 222 TIVHAYQTLLDTSNACDIIRRYDVVVDACD------NAPTRYLLNDACLREGRPLVSASA 275 (525)
Q Consensus 222 v~v~~~~~~i~~~~~~~~~~~~dvVi~~~d------~~~~r~~l~~~~~~~~~p~i~~~~ 275 (525)
.+...+.++++|+|+.+.. +- .-..+.+.+++.+++.+..-+
T Consensus 88 -----------~e~I~~~l~~~D~vfI~AGmGGGTGTG-aapvIA~iake~g~ltvaVvt 135 (384)
T PRK09330 88 -----------REEIREALEGADMVFITAGMGGGTGTG-AAPVVAEIAKELGILTVAVVT 135 (384)
T ss_pred -----------HHHHHHHHcCCCEEEEEecCCCcccHH-HHHHHHHHHHHcCCcEEEEEe
Confidence 0123456678898774322 22 234789999999887666543
No 361
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=89.54 E-value=0.36 Score=45.57 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=27.4
Q ss_pred cEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcc
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRV 187 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V 187 (525)
+|.|||+|.+|..+|..++++|. +++++|.+.-
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChH
Confidence 69999999999999999999996 5999988653
No 362
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=89.53 E-value=1.9 Score=46.92 Aligned_cols=96 Identities=18% Similarity=0.275 Sum_probs=54.0
Q ss_pred hcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHH--HHHHHHHHhhCCCcEEEEee
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKV--TSAKRFISAINRNTIVHAYQ 228 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka--~~~~~~l~~lnp~v~v~~~~ 228 (525)
.+.+|+|||.|..|...|..|++.|.. ++++|... .++.+..+.-.....++. ....+.++++ .+++....
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~~----~~gG~l~~gip~~~~~~~~~~~~~~~~~~~--Gv~~~~~~ 212 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRHP----EIGGLLTFGIPSFKLDKAVLSRRREIFTAM--GIEFHLNC 212 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecCC----CCCceeeecCccccCCHHHHHHHHHHHHHC--CCEEECCC
Confidence 567999999999999999999999985 88887653 222222221111112222 1222334443 23332111
Q ss_pred ecCCcc-hHhHhhccCCeEeecCCCHH
Q psy13373 229 TLLDTS-NACDIIRRYDVVVDACDNAP 254 (525)
Q Consensus 229 ~~i~~~-~~~~~~~~~dvVi~~~d~~~ 254 (525)
.+..+ ...+....+|.||.|+....
T Consensus 213 -~v~~~~~~~~~~~~~D~vilAtGa~~ 238 (467)
T TIGR01318 213 -EVGRDISLDDLLEDYDAVFLGVGTYR 238 (467)
T ss_pred -EeCCccCHHHHHhcCCEEEEEeCCCC
Confidence 11111 12233457999998888754
No 363
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=89.44 E-value=2.2 Score=42.50 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=29.3
Q ss_pred HhhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 149 KLLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 149 kL~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
.|++++++|.|+ |++|.++++.|+..|. ++.++|.
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r 42 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDR 42 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 367889999985 7899999999999998 5777654
No 364
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=89.41 E-value=0.75 Score=43.64 Aligned_cols=106 Identities=20% Similarity=0.196 Sum_probs=61.3
Q ss_pred cEEEEcCCcchHH-HHHHhH----HcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEee
Q psy13373 154 SVLIVGCGGTGSP-CIQYLA----ASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQ 228 (525)
Q Consensus 154 ~VlViG~GglGs~-ia~~La----~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 228 (525)
||.|||+|+.-.. .+..++ .....+|.|+|-|. .|.-.. ...+++.+++.++.++|+...
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~------~RL~~~---------~~~~~~~~~~~~~~~~v~~tt 65 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDE------ERLEIV---------ERLARRMVEEAGADLKVEATT 65 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCH------HHHHHH---------HHHHHHHHHHCTTSSEEEEES
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCH------HHHHHH---------HHHHHHHHHhcCCCeEEEEeC
Confidence 6899999997654 333333 23557999998876 221110 234555566778888876643
Q ss_pred ecCCcchHhHhhccCCeEeecCCCHH--HHHHHHHHhHhcCCcEEEecccCccc
Q psy13373 229 TLLDTSNACDIIRRYDVVVDACDNAP--TRYLLNDACLREGRPLVSASALGLEG 280 (525)
Q Consensus 229 ~~i~~~~~~~~~~~~dvVi~~~d~~~--~r~~l~~~~~~~~~p~i~~~~~g~~G 280 (525)
. ..+.++++|+||.+.---. .|..=.+++.++|+.-....+.|..|
T Consensus 66 d------~~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG 113 (183)
T PF02056_consen 66 D------RREALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGG 113 (183)
T ss_dssp S------HHHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHH
T ss_pred C------HHHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccH
Confidence 2 4677899999998655432 33333345677776544455555444
No 365
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=89.38 E-value=2.2 Score=46.27 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=31.1
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
....+|+|||.|..|.+.|..|++.|. +++|+|..
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~ 165 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGH-SVTVFEAL 165 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 356799999999999999999999997 59999874
No 366
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=89.38 E-value=1.5 Score=48.93 Aligned_cols=76 Identities=18% Similarity=0.180 Sum_probs=50.1
Q ss_pred cCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecC
Q psy13373 152 NASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLL 231 (525)
Q Consensus 152 ~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i 231 (525)
+.+|+|+|+|.+|..+++.|...|. +++++|.|. .|++. +++. + ..++..+.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~-------------------~~~~~----~~~~--g--~~~i~GD~ 468 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSR-------------------TRVDE----LRER--G--IRAVLGNA 468 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECCH-------------------HHHHH----HHHC--C--CeEEEcCC
Confidence 4799999999999999999999996 488888765 12222 2222 2 33444455
Q ss_pred CcchHh--HhhccCCeEeecCCCHHH
Q psy13373 232 DTSNAC--DIIRRYDVVVDACDNAPT 255 (525)
Q Consensus 232 ~~~~~~--~~~~~~dvVi~~~d~~~~ 255 (525)
++.+.. .-++++|.|+.++++...
T Consensus 469 ~~~~~L~~a~i~~a~~viv~~~~~~~ 494 (558)
T PRK10669 469 ANEEIMQLAHLDCARWLLLTIPNGYE 494 (558)
T ss_pred CCHHHHHhcCccccCEEEEEcCChHH
Confidence 544333 235689988766655443
No 367
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=89.38 E-value=1.9 Score=42.35 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=29.2
Q ss_pred HhhcCcEEEEc-CCcchHHHHHHhHHcCCceEEEEeC
Q psy13373 149 KLLNASVLIVG-CGGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 149 kL~~~~VlViG-~GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
++++++|+|.| .|++|..+++.|+..|. ++.+++.
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r 44 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSAR 44 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 46789999998 57799999999999998 5776654
No 368
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=89.34 E-value=1.1 Score=45.59 Aligned_cols=32 Identities=28% Similarity=0.383 Sum_probs=27.5
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
.+|.|||+|.+|..++.+|++.|. ++.++|.+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 479999999999999999999996 46777654
No 369
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=89.33 E-value=1.6 Score=43.58 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=32.8
Q ss_pred HHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeC
Q psy13373 148 EKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 148 ~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
..|++++|+|.|.|.+|+.+|+.|...|.+-+.+.|.
T Consensus 34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~ 70 (254)
T cd05313 34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDS 70 (254)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 3478899999999999999999999999887777774
No 370
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=89.32 E-value=1.2 Score=46.56 Aligned_cols=97 Identities=24% Similarity=0.272 Sum_probs=56.1
Q ss_pred cEEEEcC-CcchHHHHHHhHHcCCceEE-EEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecC
Q psy13373 154 SVLIVGC-GGTGSPCIQYLAASGVGTLG-LADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLL 231 (525)
Q Consensus 154 ~VlViG~-GglGs~ia~~La~~GVg~i~-lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i 231 (525)
+|+|+|+ |.+|.++++.|...-.-++. +++.+. ..|+. +.+..|.+.... ...+
T Consensus 2 kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~---------------sagk~--------~~~~~~~l~~~~-~~~~ 57 (346)
T TIGR01850 2 KVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE---------------SAGKP--------VSEVHPHLRGLV-DLNL 57 (346)
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch---------------hcCCC--------hHHhCccccccC-Ccee
Confidence 7999998 77999999999976333344 544431 12221 111222221100 0011
Q ss_pred CcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecc
Q psy13373 232 DTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASA 275 (525)
Q Consensus 232 ~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~ 275 (525)
...+..++..++|+|+.|+.+...+.++..+ .+.|+.+|+.+.
T Consensus 58 ~~~~~~~~~~~~DvVf~alP~~~s~~~~~~~-~~~G~~VIDlS~ 100 (346)
T TIGR01850 58 EPIDEEEIAEDADVVFLALPHGVSAELAPEL-LAAGVKVIDLSA 100 (346)
T ss_pred ecCCHHHhhcCCCEEEECCCchHHHHHHHHH-HhCCCEEEeCCh
Confidence 1112234446899999999887666665554 557888998643
No 371
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=89.32 E-value=0.89 Score=46.09 Aligned_cols=101 Identities=18% Similarity=0.294 Sum_probs=54.6
Q ss_pred cEEEEcC-CcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecCC
Q psy13373 154 SVLIVGC-GGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLD 232 (525)
Q Consensus 154 ~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~ 232 (525)
||+|+|+ |-||+.+++.|...|..-+.+ +.. ++.....+.+.+.+.+..|++-|..-- ++
T Consensus 2 riLI~GasG~lG~~l~~~l~~~~~~v~~~-~r~----------------~~dl~d~~~~~~~~~~~~pd~Vin~aa--~~ 62 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKERGYEVIAT-SRS----------------DLDLTDPEAVAKLLEAFKPDVVINCAA--YT 62 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTTTSEEEEEE-STT----------------CS-TTSHHHHHHHHHHH--SEEEE-------
T ss_pred EEEEECCCCHHHHHHHHHHhhCCCEEEEe-Cch----------------hcCCCCHHHHHHHHHHhCCCeEeccce--ee
Confidence 7999996 559999999999977653333 333 222233567777777777776555421 11
Q ss_pred cchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecccC
Q psy13373 233 TSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALG 277 (525)
Q Consensus 233 ~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g 277 (525)
.-..-+.-.....-+ |...-..|.+.|...++++|+.++..
T Consensus 63 ~~~~ce~~p~~a~~i----N~~~~~~la~~~~~~~~~li~~STd~ 103 (286)
T PF04321_consen 63 NVDACEKNPEEAYAI----NVDATKNLAEACKERGARLIHISTDY 103 (286)
T ss_dssp -HHHHHHSHHHHHHH----HTHHHHHHHHHHHHCT-EEEEEEEGG
T ss_pred cHHhhhhChhhhHHH----hhHHHHHHHHHHHHcCCcEEEeeccE
Confidence 100000000000000 11233467889999999999987754
No 372
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=89.24 E-value=3.1 Score=40.95 Aligned_cols=32 Identities=25% Similarity=0.477 Sum_probs=26.0
Q ss_pred HhhcCcEEEEcC-CcchHHHHHHhHHcCCceEEE
Q psy13373 149 KLLNASVLIVGC-GGTGSPCIQYLAASGVGTLGL 181 (525)
Q Consensus 149 kL~~~~VlViG~-GglGs~ia~~La~~GVg~i~l 181 (525)
....++|+|+|+ |++|..+++.|+..|.. ++.
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~-V~~ 46 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFA-VKA 46 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCE-EEE
Confidence 355679999995 77999999999998864 444
No 373
>PRK06199 ornithine cyclodeaminase; Validated
Probab=89.23 E-value=1.7 Score=46.03 Aligned_cols=76 Identities=16% Similarity=0.249 Sum_probs=57.4
Q ss_pred cCcEEEEcCCcchHHHHHHhHHc--CCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCc-EEEEee
Q psy13373 152 NASVLIVGCGGTGSPCIQYLAAS--GVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNT-IVHAYQ 228 (525)
Q Consensus 152 ~~~VlViG~GglGs~ia~~La~~--GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v-~v~~~~ 228 (525)
.++++|+|+|.-+..-++.++.. .+.+|.++|.+. .|++..++++.+..+.+ ++...
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~-------------------~~a~~f~~~~~~~~~~~~~v~~~- 214 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQ-------------------KSLDSFATWVAETYPQITNVEVV- 214 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCH-------------------HHHHHHHHHHHHhcCCCceEEEe-
Confidence 47999999999999999988763 589999875533 57778888888766544 35442
Q ss_pred ecCCcchHhHhhccCCeEeecCCC
Q psy13373 229 TLLDTSNACDIIRRYDVVVDACDN 252 (525)
Q Consensus 229 ~~i~~~~~~~~~~~~dvVi~~~d~ 252 (525)
++..+.+.++|+|+.||.+
T Consensus 215 -----~s~~eav~~ADIVvtaT~s 233 (379)
T PRK06199 215 -----DSIEEVVRGSDIVTYCNSG 233 (379)
T ss_pred -----CCHHHHHcCCCEEEEccCC
Confidence 2256778999999998764
No 374
>PRK12367 short chain dehydrogenase; Provisional
Probab=89.22 E-value=0.55 Score=46.47 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=34.0
Q ss_pred HHHHHhhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 145 MGQEKLLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 145 ~~q~kL~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
-.|.+|++++++|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus 7 ~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~ 47 (245)
T PRK12367 7 MAQSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHS 47 (245)
T ss_pred hhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 3799999999999986 6799999999999997 56666654
No 375
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=89.21 E-value=2.6 Score=40.78 Aligned_cols=89 Identities=24% Similarity=0.238 Sum_probs=57.1
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHH-HHHHHHHHhhCCCcEEEEeeecC
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKV-TSAKRFISAINRNTIVHAYQTLL 231 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka-~~~~~~l~~lnp~v~v~~~~~~i 231 (525)
.++.|+|.|-+|+.++..|+.+|. ++++- +| ..+|+ +++++ .+.|. +
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~-eV~ig----------s~---------r~~~~~~a~a~---~l~~~---------i 49 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGH-EVIIG----------SS---------RGPKALAAAAA---ALGPL---------I 49 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCC-eEEEe----------cC---------CChhHHHHHHH---hhccc---------c
Confidence 478999999999999999999993 34431 00 11232 33333 33332 2
Q ss_pred CcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhc-CCcEEEe
Q psy13373 232 DTSNACDIIRRYDVVVDACDNAPTRYLLNDACLRE-GRPLVSA 273 (525)
Q Consensus 232 ~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~-~~p~i~~ 273 (525)
+.....+-.+.+|+||.+.-.......+.++.-.. ++-+|+.
T Consensus 50 ~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~~KIvID~ 92 (211)
T COG2085 50 TGGSNEDAAALADVVVLAVPFEAIPDVLAELRDALGGKIVIDA 92 (211)
T ss_pred ccCChHHHHhcCCEEEEeccHHHHHhHHHHHHHHhCCeEEEec
Confidence 33334667788999999887766666666665444 5766765
No 376
>KOG1205|consensus
Probab=89.16 E-value=1.9 Score=43.76 Aligned_cols=84 Identities=21% Similarity=0.224 Sum_probs=57.5
Q ss_pred HHHHHhhcCcEEEEcCC-cchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcE
Q psy13373 145 MGQEKLLNASVLIVGCG-GTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTI 223 (525)
Q Consensus 145 ~~q~kL~~~~VlViG~G-glGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~ 223 (525)
...+++.++.|+|-|+. |+|-++|+.|+..|.+-+.++= -..+-+.+++.+++..+.-+
T Consensus 5 ~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar--------------------~~rrl~~v~~~l~~~~~~~~ 64 (282)
T KOG1205|consen 5 LFMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVAR--------------------RARRLERVAEELRKLGSLEK 64 (282)
T ss_pred ccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeeh--------------------hhhhHHHHHHHHHHhCCcCc
Confidence 45788999999999965 6999999999999998666530 11345666666666655446
Q ss_pred EEEeeecCCcch-Hh-------HhhccCCeEee
Q psy13373 224 VHAYQTLLDTSN-AC-------DIIRRYDVVVD 248 (525)
Q Consensus 224 v~~~~~~i~~~~-~~-------~~~~~~dvVi~ 248 (525)
+.++..++++.. .. ..+.+.|++|+
T Consensus 65 v~~~~~Dvs~~~~~~~~~~~~~~~fg~vDvLVN 97 (282)
T KOG1205|consen 65 VLVLQLDVSDEESVKKFVEWAIRHFGRVDVLVN 97 (282)
T ss_pred cEEEeCccCCHHHHHHHHHHHHHhcCCCCEEEe
Confidence 677766666542 11 23456676664
No 377
>PRK06139 short chain dehydrogenase; Provisional
Probab=89.08 E-value=1.3 Score=45.98 Aligned_cols=35 Identities=34% Similarity=0.435 Sum_probs=29.3
Q ss_pred HhhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 149 KLLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 149 kL~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
.+++++|+|.|+ ||+|.++++.|+..|.. +.+++.
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~-Vvl~~R 39 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGAR-LVLAAR 39 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence 467889999997 68999999999999985 666654
No 378
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=89.07 E-value=0.4 Score=49.17 Aligned_cols=32 Identities=31% Similarity=0.352 Sum_probs=28.8
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
.+|+|+|+|++|+.++-.|+++|. .+++++..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 479999999999999999999995 68888774
No 379
>PRK14982 acyl-ACP reductase; Provisional
Probab=89.06 E-value=0.4 Score=49.97 Aligned_cols=37 Identities=38% Similarity=0.569 Sum_probs=32.0
Q ss_pred HhhcCcEEEEcC-CcchHHHHHHhHH-cCCceEEEEeCC
Q psy13373 149 KLLNASVLIVGC-GGTGSPCIQYLAA-SGVGTLGLADYD 185 (525)
Q Consensus 149 kL~~~~VlViG~-GglGs~ia~~La~-~GVg~i~lvD~d 185 (525)
.|++++|+|+|+ |.+|+.++++|+. .|+.++++++.+
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~ 190 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQ 190 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCC
Confidence 478899999999 7899999999985 589999997653
No 380
>PLN02214 cinnamoyl-CoA reductase
Probab=89.06 E-value=4.4 Score=42.02 Aligned_cols=106 Identities=15% Similarity=0.071 Sum_probs=59.3
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEee
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQ 228 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 228 (525)
+++++|+|.|+ |.+|+.+++.|+..|.. ++.++.+. ++. +... ...+.... -+++.+.
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~-V~~~~r~~---~~~--------------~~~~-~~~~~~~~--~~~~~~~ 66 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYT-VKGTVRNP---DDP--------------KNTH-LRELEGGK--ERLILCK 66 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeCCc---hhh--------------hHHH-HHHhhCCC--CcEEEEe
Confidence 45778999997 77999999999999964 55544321 000 0000 11111111 1344444
Q ss_pred ecCCcc-hHhHhhccCCeEeecCCC----HH--------HHHHHHHHhHhcCC-cEEEeccc
Q psy13373 229 TLLDTS-NACDIIRRYDVVVDACDN----AP--------TRYLLNDACLREGR-PLVSASAL 276 (525)
Q Consensus 229 ~~i~~~-~~~~~~~~~dvVi~~~d~----~~--------~r~~l~~~~~~~~~-p~i~~~~~ 276 (525)
..+.+. ...+.++++|+||.+... .. .-..+-+.|++.++ .+|+.++.
T Consensus 67 ~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~ 128 (342)
T PLN02214 67 ADLQDYEALKAAIDGCDGVFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSI 128 (342)
T ss_pred cCcCChHHHHHHHhcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 455443 345667889999866532 11 11235566777775 46666553
No 381
>PLN02780 ketoreductase/ oxidoreductase
Probab=89.02 E-value=2.2 Score=44.01 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=43.4
Q ss_pred hcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeee
Q psy13373 151 LNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQT 229 (525)
Q Consensus 151 ~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~ 229 (525)
.++.++|.|+ ||+|.++|+.|+..|. ++.+++.+. .|.+.+++.+++..+..++..+..
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~~~~~ 111 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNP-------------------DKLKDVSDSIQSKYSKTQIKTVVV 111 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCH-------------------HHHHHHHHHHHHHCCCcEEEEEEE
Confidence 4688999985 6799999999999998 577765432 345556666766655556655554
Q ss_pred cCC
Q psy13373 230 LLD 232 (525)
Q Consensus 230 ~i~ 232 (525)
++.
T Consensus 112 Dl~ 114 (320)
T PLN02780 112 DFS 114 (320)
T ss_pred ECC
Confidence 444
No 382
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=89.01 E-value=2 Score=50.55 Aligned_cols=41 Identities=27% Similarity=0.313 Sum_probs=34.7
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccC
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSN 191 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sN 191 (525)
-.+++|+|||+|.-|-+.|..|++.|.. ++++|...++.-+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~-Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHN-VTAIDGLKITLLP 421 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCe-EEEEccccccccc
Confidence 3678999999999999999999999965 9999987654443
No 383
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=89.00 E-value=3.3 Score=44.02 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=26.4
Q ss_pred hcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 151 LNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 151 ~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
+..+|+|+|. |.+|+.+++.|...|. ++++++.
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R 92 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAR 92 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEe
Confidence 3458999986 6799999999999996 4666554
No 384
>PRK13529 malate dehydrogenase; Provisional
Probab=88.94 E-value=1.7 Score=47.97 Aligned_cols=111 Identities=15% Similarity=0.255 Sum_probs=69.3
Q ss_pred HHhhcCcEEEEcCCcchHHHHHHhHH----cCC------ceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHh
Q psy13373 148 EKLLNASVLIVGCGGTGSPCIQYLAA----SGV------GTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISA 217 (525)
Q Consensus 148 ~kL~~~~VlViG~GglGs~ia~~La~----~GV------g~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~ 217 (525)
++|++.+|+++|+|+.|..||+.|+. .|+ ++|.++|.+=+=..+ ..|+...|...+++
T Consensus 291 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~--------r~~l~~~k~~fa~~---- 358 (563)
T PRK13529 291 EPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDD--------MPDLLDFQKPYARK---- 358 (563)
T ss_pred CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCC--------CCcchHHHHHHhhh----
Confidence 57889999999999999999999997 699 699999976422111 11233334333332
Q ss_pred hCCCcEEEEeeecCCcchHhHhhccC--CeEeecCC--CHHHHHHHHHHhHhcCCcEEEe
Q psy13373 218 INRNTIVHAYQTLLDTSNACDIIRRY--DVVVDACD--NAPTRYLLNDACLREGRPLVSA 273 (525)
Q Consensus 218 lnp~v~v~~~~~~i~~~~~~~~~~~~--dvVi~~~d--~~~~r~~l~~~~~~~~~p~i~~ 273 (525)
.++ . ......-...+..+.++.. |++|-++. ..-....|..++.....|+|.+
T Consensus 359 ~~~-~--~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 415 (563)
T PRK13529 359 REE-L--ADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFP 415 (563)
T ss_pred ccc-c--cccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 121 1 0000000112356777766 99986654 2334567777877777898876
No 385
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=88.90 E-value=1.8 Score=47.93 Aligned_cols=103 Identities=17% Similarity=0.260 Sum_probs=69.1
Q ss_pred HHhhcCcEEEEcCCcchHHHHHHhHH-----cCC------ceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHH
Q psy13373 148 EKLLNASVLIVGCGGTGSPCIQYLAA-----SGV------GTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFIS 216 (525)
Q Consensus 148 ~kL~~~~VlViG~GglGs~ia~~La~-----~GV------g~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~ 216 (525)
++|++.+|+++|+|+.|..||+.|+. .|+ ++|.++|.+=+=..+- .+++-..|...++.
T Consensus 317 ~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r-------~~~l~~~k~~fa~~--- 386 (581)
T PLN03129 317 GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSR-------KDSLQPFKKPFAHD--- 386 (581)
T ss_pred CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCC-------CccChHHHHHHHhh---
Confidence 58899999999999999999999998 487 7999999874221111 01133344444432
Q ss_pred hhCCCcEEEEeeecCCcchHhHhhcc--CCeEeecCC--CHHHHHHHHHHhHhcCCcEEEe
Q psy13373 217 AINRNTIVHAYQTLLDTSNACDIIRR--YDVVVDACD--NAPTRYLLNDACLREGRPLVSA 273 (525)
Q Consensus 217 ~lnp~v~v~~~~~~i~~~~~~~~~~~--~dvVi~~~d--~~~~r~~l~~~~~~~~~p~i~~ 273 (525)
.+. ..+..+.++. .|++|-++. ..-....|..++.....|+|.+
T Consensus 387 --~~~-----------~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFa 434 (581)
T PLN03129 387 --HEP-----------GASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFA 434 (581)
T ss_pred --ccc-----------CCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 111 1235677777 899987653 2334567788887778898886
No 386
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=88.85 E-value=0.6 Score=44.34 Aligned_cols=86 Identities=23% Similarity=0.277 Sum_probs=47.0
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHH-HHHHHHHhhCCCcEEEEeeecC
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVT-SAKRFISAINRNTIVHAYQTLL 231 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~-~~~~~l~~lnp~v~v~~~~~~i 231 (525)
.+|.|+|+|=+|...|-.|+..|. +++-+|.|.-....+++-.. .+..+-.+ .+++.++. -+....
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~----p~~E~~l~~ll~~~~~~----~~l~~t---- 67 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGEL----PIYEPGLDELLKENVSA----GRLRAT---- 67 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSS----SS-CTTHHHHHHHHHHT----TSEEEE----
T ss_pred CEEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccc----cccccchhhhhcccccc----ccchhh----
Confidence 479999999999999999999995 58888988876666665433 12222222 23333321 122221
Q ss_pred CcchHhHhhccCCeEeecCCCH
Q psy13373 232 DTSNACDIIRRYDVVVDACDNA 253 (525)
Q Consensus 232 ~~~~~~~~~~~~dvVi~~~d~~ 253 (525)
.+..+.++++|++|.|..++
T Consensus 68 --~~~~~ai~~adv~~I~VpTP 87 (185)
T PF03721_consen 68 --TDIEEAIKDADVVFICVPTP 87 (185)
T ss_dssp --SEHHHHHHH-SEEEE----E
T ss_pred --hhhhhhhhccceEEEecCCC
Confidence 11344578899998887654
No 387
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=88.85 E-value=2.9 Score=40.93 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=26.6
Q ss_pred cCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 152 NASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 152 ~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
+++|+|.|. |++|.++++.|+..|. ++.++|.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~ 35 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADIN 35 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 467999986 5699999999999997 57777643
No 388
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=88.78 E-value=1.5 Score=46.44 Aligned_cols=77 Identities=13% Similarity=0.057 Sum_probs=52.3
Q ss_pred CcEEEEcC-CcchHHHHHHhHHcCCce------EEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhC-CCc-E
Q psy13373 153 ASVLIVGC-GGTGSPCIQYLAASGVGT------LGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAIN-RNT-I 223 (525)
Q Consensus 153 ~~VlViG~-GglGs~ia~~La~~GVg~------i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~ln-p~v-~ 223 (525)
.||.|||+ |.+|+.+|..|+..|+-. |+|+|- |+.+.|++..+--|.... |.. .
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~di-----------------D~~~~~a~g~a~DL~d~a~~~~~~ 107 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGS-----------------ERSKEALEGVAMELEDSLYPLLRE 107 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEecc-----------------CccchhhhHHHHHHHHhhhhhcCc
Confidence 49999999 999999999999998843 455433 445566666666666654 433 2
Q ss_pred EEEeeecCCcchHhHhhccCCeEeecCCC
Q psy13373 224 VHAYQTLLDTSNACDIIRRYDVVVDACDN 252 (525)
Q Consensus 224 v~~~~~~i~~~~~~~~~~~~dvVi~~~d~ 252 (525)
+.. .. ...+.++++|+||.+...
T Consensus 108 v~i-----~~-~~y~~~kdaDIVVitAG~ 130 (387)
T TIGR01757 108 VSI-----GI-DPYEVFEDADWALLIGAK 130 (387)
T ss_pred eEE-----ec-CCHHHhCCCCEEEECCCC
Confidence 221 11 124678999999976554
No 389
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=88.77 E-value=2.3 Score=42.40 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=25.2
Q ss_pred cEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 154 SVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 154 ~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
+|+|+|. |.+|+.+++.|...|. ++++++.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~-~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR-VVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-EEEEeCC
Confidence 5899995 8899999999999885 5777665
No 390
>PRK12829 short chain dehydrogenase; Provisional
Probab=88.77 E-value=1.9 Score=42.26 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=30.7
Q ss_pred HHHhhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 147 QEKLLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 147 q~kL~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
...+++++|+|.|+ |++|..+++.|+..|.. +.+++.
T Consensus 6 ~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~r 43 (264)
T PRK12829 6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCDV 43 (264)
T ss_pred hhccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeC
Confidence 34478899999985 66999999999999985 777663
No 391
>PRK05876 short chain dehydrogenase; Provisional
Probab=88.75 E-value=1.7 Score=43.52 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=28.3
Q ss_pred hhcCcEEEEc-CCcchHHHHHHhHHcCCceEEEEeC
Q psy13373 150 LLNASVLIVG-CGGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 150 L~~~~VlViG-~GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
|++++|+|.| .||+|.++++.|+..|.. +.++|.
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~-Vv~~~r 38 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGAR-VVLGDV 38 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence 6778899998 667999999999999985 676654
No 392
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=88.75 E-value=2 Score=41.69 Aligned_cols=34 Identities=24% Similarity=0.508 Sum_probs=27.7
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
|++++|+|.|+ |++|+.+++.|+..|. ++.++|.
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r 35 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDL 35 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecC
Confidence 46789999984 6799999999999987 4666544
No 393
>KOG1093|consensus
Probab=88.75 E-value=0.14 Score=55.48 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=36.2
Q ss_pred CCcccChhhhHHHHHhcCCCcEEEecCChhhhhcCCCCCeEEeChh
Q psy13373 398 PTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMA 443 (525)
Q Consensus 398 ~~~~is~~el~~~~l~~~~~~~lIDVR~~~E~~~ghIpGAinip~~ 443 (525)
..++|++++++.+ ....++|.|...||..+|+++++|+|+.
T Consensus 620 ~~prmsAedl~~~-----~~l~v~d~r~~~ef~r~~~s~s~nip~~ 660 (725)
T KOG1093|consen 620 HCPRISAEDLIWL-----KMLYVLDTRQESEFQREHFSDSINIPFN 660 (725)
T ss_pred cCccccHHHHHHH-----HHHHHHhHHHHHHHHHhhccccccCCcc
Confidence 3578999998876 3578999999999999999999999998
No 394
>KOG0024|consensus
Probab=88.71 E-value=3.4 Score=42.46 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=30.9
Q ss_pred hcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
..++|+|+|+|.+|-....-+-.+|..+|.++|-.
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~ 203 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLV 203 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecC
Confidence 56899999999999988888888999999997654
No 395
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=88.66 E-value=2.1 Score=43.31 Aligned_cols=97 Identities=21% Similarity=0.248 Sum_probs=60.6
Q ss_pred cEEEEcCCc-chHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeec-C
Q psy13373 154 SVLIVGCGG-TGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTL-L 231 (525)
Q Consensus 154 ~VlViG~Gg-lGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~-i 231 (525)
+|+|.|.+| ||.++++.|. +-.++.-.|...++..| .+.+.+.+++..|++-|++-.-. +
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~Ditd----------------~~~v~~~i~~~~PDvVIn~AAyt~v 63 (281)
T COG1091 2 KILITGANGQLGTELRRALP--GEFEVIATDRAELDITD----------------PDAVLEVIRETRPDVVINAAAYTAV 63 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC--CCceEEeccCccccccC----------------hHHHHHHHHhhCCCEEEECcccccc
Confidence 499999887 9999999998 54556655554433333 45678888899999877643211 1
Q ss_pred Cc-chHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEeccc
Q psy13373 232 DT-SNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASAL 276 (525)
Q Consensus 232 ~~-~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~ 276 (525)
+. ++..+ ...-| |...-..+.+.|.+.|.++|+.++.
T Consensus 64 D~aE~~~e----~A~~v----Na~~~~~lA~aa~~~ga~lVhiSTD 101 (281)
T COG1091 64 DKAESEPE----LAFAV----NATGAENLARAAAEVGARLVHISTD 101 (281)
T ss_pred ccccCCHH----HHHHh----HHHHHHHHHHHHHHhCCeEEEeecc
Confidence 10 00000 00111 1122345778899999999998774
No 396
>PRK07326 short chain dehydrogenase; Provisional
Probab=88.64 E-value=2.3 Score=40.99 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=27.7
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
+.+.+|+|+|+ |++|..+++.|+..|.. +.+++.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~r 38 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYK-VAITAR 38 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEeeC
Confidence 45688999985 77999999999999985 776544
No 397
>PRK08655 prephenate dehydrogenase; Provisional
Probab=88.59 E-value=2.4 Score=45.87 Aligned_cols=31 Identities=26% Similarity=0.494 Sum_probs=27.2
Q ss_pred cEEEEc-CCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 154 SVLIVG-CGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 154 ~VlViG-~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
+|+||| +|++|..+++.|...|. +++++|.+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~ 33 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRD 33 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 699997 89999999999999996 68888764
No 398
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=88.57 E-value=2.6 Score=42.36 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=20.1
Q ss_pred CcEEEEcCCcchHHHHHHhHHc
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAAS 174 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~ 174 (525)
.||.|||||.+|..+++.|...
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~ 23 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHD 23 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhC
Confidence 3899999999999999999876
No 399
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=88.54 E-value=0.45 Score=52.69 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=30.7
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeC
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
+++++|+|+|+||+|..+++.|+..|+ +|++++.
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR 410 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANR 410 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence 567899999999999999999999999 8998754
No 400
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=88.51 E-value=1.9 Score=44.77 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=51.3
Q ss_pred cCcEEEEcCCcchHHHHHHhHH-cCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeec
Q psy13373 152 NASVLIVGCGGTGSPCIQYLAA-SGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTL 230 (525)
Q Consensus 152 ~~~VlViG~GglGs~ia~~La~-~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 230 (525)
..++.|||+|..|...++.|.. ..+.++.++|. ...|++..++++++.. +++...
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r-------------------~~~~~~~~~~~~~~~g--~~v~~~--- 183 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCR-------------------TPSTREKFALRASDYE--VPVRAA--- 183 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECC-------------------CHHHHHHHHHHHHhhC--CcEEEe---
Confidence 5799999999999987777754 35667777544 3356677777776543 333332
Q ss_pred CCcchHhHhhccCCeEeecCCC
Q psy13373 231 LDTSNACDIIRRYDVVVDACDN 252 (525)
Q Consensus 231 i~~~~~~~~~~~~dvVi~~~d~ 252 (525)
.+..+.++++|+|+.||.+
T Consensus 184 ---~~~~eav~~aDiVitaT~s 202 (325)
T TIGR02371 184 ---TDPREAVEGCDILVTTTPS 202 (325)
T ss_pred ---CCHHHHhccCCEEEEecCC
Confidence 2345778999999999865
No 401
>PRK07035 short chain dehydrogenase; Provisional
Probab=88.51 E-value=1.9 Score=42.08 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=29.2
Q ss_pred HhhcCcEEEEc-CCcchHHHHHHhHHcCCceEEEEeC
Q psy13373 149 KLLNASVLIVG-CGGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 149 kL~~~~VlViG-~GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
.|++++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r 40 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSR 40 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 36788999998 55699999999999997 6777765
No 402
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.45 E-value=1.7 Score=41.99 Aligned_cols=32 Identities=25% Similarity=0.479 Sum_probs=26.5
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEE
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGL 181 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~l 181 (525)
|.+++|+|+|+ |++|.++++.|+..|..-+.+
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~ 35 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIA 35 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 66789999985 789999999999999864433
No 403
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=88.45 E-value=5.2 Score=41.02 Aligned_cols=35 Identities=23% Similarity=0.457 Sum_probs=29.8
Q ss_pred cEEEEcCCcchHHHHHHhHHcCCc--eEEEEeCCccc
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGVG--TLGLADYDRVE 188 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GVg--~i~lvD~d~V~ 188 (525)
+|.|||+||-|+.++..|.+.|+. ++..+|.|.-.
T Consensus 2 ~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~~ 38 (304)
T cd02201 2 KIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQA 38 (304)
T ss_pred eEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHH
Confidence 699999999999999999999986 45677877633
No 404
>PLN00016 RNA-binding protein; Provisional
Probab=88.44 E-value=3.1 Score=43.77 Aligned_cols=114 Identities=16% Similarity=0.105 Sum_probs=63.1
Q ss_pred HHhhcCcEEEE----cC-CcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCc
Q psy13373 148 EKLLNASVLIV----GC-GGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNT 222 (525)
Q Consensus 148 ~kL~~~~VlVi----G~-GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v 222 (525)
......+|+|+ |+ |-+|+.+++.|...|. ++++++.+.-....+.. ...... ..+.. ..+
T Consensus 48 ~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~~-----------~~~~~~-~~l~~--~~v 112 (378)
T PLN00016 48 AAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMKK-----------EPFSRF-SELSS--AGV 112 (378)
T ss_pred cccccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhcc-----------Cchhhh-hHhhh--cCc
Confidence 34555789999 75 6699999999999995 67877765321110100 000000 01111 123
Q ss_pred EEEEeeecCCcchHhHhh--ccCCeEeecCCC-HHHHHHHHHHhHhcCC-cEEEecccCccc
Q psy13373 223 IVHAYQTLLDTSNACDII--RRYDVVVDACDN-APTRYLLNDACLREGR-PLVSASALGLEG 280 (525)
Q Consensus 223 ~v~~~~~~i~~~~~~~~~--~~~dvVi~~~d~-~~~r~~l~~~~~~~~~-p~i~~~~~g~~G 280 (525)
+.+...+.+ ..+.+ .++|+||.+... ......+-+.|.+.++ .+|..++.+.+|
T Consensus 113 --~~v~~D~~d--~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg 170 (378)
T PLN00016 113 --KTVWGDPAD--VKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSAGVYK 170 (378)
T ss_pred --eEEEecHHH--HHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccHhhcC
Confidence 333333322 23333 468999987543 2233446677888887 477777665544
No 405
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=88.44 E-value=2 Score=41.83 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=27.5
Q ss_pred hhcCcEEEEc-CCcchHHHHHHhHHcCCceEEEEeC
Q psy13373 150 LLNASVLIVG-CGGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 150 L~~~~VlViG-~GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
+++++|+|.| .|++|.++++.|+..|. ++.+++.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r 36 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA-KVVIADL 36 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence 5678999998 57899999999999987 4665543
No 406
>PRK06523 short chain dehydrogenase; Provisional
Probab=88.43 E-value=1.3 Score=43.40 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=31.2
Q ss_pred HhhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 149 KLLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 149 kL~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
+|++++|+|.|+ ||+|.++++.|+..|.. +.+++.+.
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~r~~ 43 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGAR-VVTTARSR 43 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCCE-EEEEeCCh
Confidence 477899999985 78999999999999984 88887653
No 407
>PRK07774 short chain dehydrogenase; Provisional
Probab=88.33 E-value=1.8 Score=42.11 Aligned_cols=35 Identities=26% Similarity=0.509 Sum_probs=28.9
Q ss_pred HhhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 149 KLLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 149 kL~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
.+++++|+|.|. |++|..+++.|+..|. ++.++|.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r 38 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADI 38 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 366789999996 8899999999999996 4666654
No 408
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=88.30 E-value=3.3 Score=42.46 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=29.4
Q ss_pred hcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeC
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
.+.+|+|.|+|++|..++..+...|.+++..+|.
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~ 196 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDP 196 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 3679999999999999999999999987777654
No 409
>PRK13243 glyoxylate reductase; Reviewed
Probab=88.26 E-value=0.52 Score=49.08 Aligned_cols=92 Identities=15% Similarity=0.191 Sum_probs=58.3
Q ss_pred HHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEe
Q psy13373 148 EKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAY 227 (525)
Q Consensus 148 ~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~ 227 (525)
..|.+++|+|||+|.+|..+|+.|...|. ++..+|...- + ... .+. .+ .
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~-------------------~-~~~----~~~--~~--~-- 194 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRK-------------------P-EAE----KEL--GA--E-- 194 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCC-------------------h-hhH----HHc--CC--E--
Confidence 35899999999999999999999999997 5777765310 0 000 011 11 0
Q ss_pred eecCCcchHhHhhccCCeEeecCCC-HHHHHHHHHHhH---hcCCcEEEecc
Q psy13373 228 QTLLDTSNACDIIRRYDVVVDACDN-APTRYLLNDACL---REGRPLVSASA 275 (525)
Q Consensus 228 ~~~i~~~~~~~~~~~~dvVi~~~d~-~~~r~~l~~~~~---~~~~p~i~~~~ 275 (525)
..+..++++.+|+|+.++-. .+++.++++... +.+.-+|+.+.
T Consensus 195 -----~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aR 241 (333)
T PRK13243 195 -----YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTAR 241 (333)
T ss_pred -----ecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcC
Confidence 11256788899998876653 456666654322 33444666543
No 410
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=88.22 E-value=0.52 Score=48.42 Aligned_cols=33 Identities=33% Similarity=0.536 Sum_probs=30.3
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCc-eEEEEeCC
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVG-TLGLADYD 185 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg-~i~lvD~d 185 (525)
.||.|||+|.+|+.+|..|+.-+++ ++.|+|-.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~ 34 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN 34 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcc
Confidence 4799999999999999999999999 99999754
No 411
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=88.06 E-value=0.63 Score=49.34 Aligned_cols=44 Identities=30% Similarity=0.435 Sum_probs=36.1
Q ss_pred hcCcEEEEcCCcchHHHHHHhHHc-CCceEEEEeCCcccccCCCc
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAAS-GVGTLGLADYDRVELSNLHR 194 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~~-GVg~i~lvD~d~V~~sNL~R 194 (525)
+...|+|||.|-+|+.+|..|++. |..+++|+|.+.+....-.+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~ 73 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGR 73 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCccccc
Confidence 346899999999999999999985 88789999998765443333
No 412
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.00 E-value=0.59 Score=48.04 Aligned_cols=32 Identities=34% Similarity=0.436 Sum_probs=29.3
Q ss_pred cEEEEcCCcchHHHHHHhHHcCC-ceEEEEeCC
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGV-GTLGLADYD 185 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GV-g~i~lvD~d 185 (525)
+|.|||+|.+|+.+|..|+..|+ .++.++|.+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~ 34 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDIN 34 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 69999999999999999999996 789999864
No 413
>CHL00194 ycf39 Ycf39; Provisional
Probab=87.96 E-value=3.2 Score=42.43 Aligned_cols=95 Identities=16% Similarity=0.177 Sum_probs=56.7
Q ss_pred cEEEEcC-CcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecCC
Q psy13373 154 SVLIVGC-GGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLD 232 (525)
Q Consensus 154 ~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~ 232 (525)
+|+|.|+ |-+|+.+++.|...|. +++.++.+. .++ ..+.. +. ++.+..++.
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~-------------------~~~----~~l~~--~~--v~~v~~Dl~ 53 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNL-------------------RKA----SFLKE--WG--AELVYGDLS 53 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcCh-------------------HHh----hhHhh--cC--CEEEECCCC
Confidence 7999996 6699999999999996 466654321 011 11111 12 334444444
Q ss_pred c-chHhHhhccCCeEeecCCCH------------HHHHHHHHHhHhcCCc-EEEeccc
Q psy13373 233 T-SNACDIIRRYDVVVDACDNA------------PTRYLLNDACLREGRP-LVSASAL 276 (525)
Q Consensus 233 ~-~~~~~~~~~~dvVi~~~d~~------------~~r~~l~~~~~~~~~p-~i~~~~~ 276 (525)
+ +...+.+.++|+||.+.... .....+-+.|++.++. +|..++.
T Consensus 54 d~~~l~~al~g~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~ 111 (317)
T CHL00194 54 LPETLPPSFKGVTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSIL 111 (317)
T ss_pred CHHHHHHHHCCCCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 3 33556788999999764321 1113355778887764 6665543
No 414
>PRK14031 glutamate dehydrogenase; Provisional
Probab=87.91 E-value=1.5 Score=47.40 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=33.5
Q ss_pred HhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 149 KLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 149 kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
.|++++|+|.|.|-+|+..|+.|...|.+=+.+-|.+
T Consensus 225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~ 261 (444)
T PRK14031 225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSD 261 (444)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3789999999999999999999999999988888743
No 415
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.83 E-value=3 Score=42.45 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=50.1
Q ss_pred HHhhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEE
Q psy13373 148 EKLLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHA 226 (525)
Q Consensus 148 ~kL~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~ 226 (525)
-.|++++++|.|+ ||+|.++++.|+..|.. +.++|... ..+++.+.+.++... .++..
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~-Vv~~~~~~------------------~~~~~~~~~~i~~~g--~~~~~ 66 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGAT-VVVNDVAS------------------ALDASDVLDEIRAAG--AKAVA 66 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEecCCc------------------hhHHHHHHHHHHhcC--CeEEE
Confidence 3477889999985 56999999999999984 66655421 123444555555433 34555
Q ss_pred eeecCCcch-HhHh------hccCCeEeecC
Q psy13373 227 YQTLLDTSN-ACDI------IRRYDVVVDAC 250 (525)
Q Consensus 227 ~~~~i~~~~-~~~~------~~~~dvVi~~~ 250 (525)
+..++.+.. ...+ +...|+||.+.
T Consensus 67 ~~~Dv~d~~~~~~~~~~~~~~g~iD~li~nA 97 (306)
T PRK07792 67 VAGDISQRATADELVATAVGLGGLDIVVNNA 97 (306)
T ss_pred EeCCCCCHHHHHHHHHHHHHhCCCCEEEECC
Confidence 555554421 1122 34678887654
No 416
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=87.81 E-value=3.5 Score=44.93 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=30.3
Q ss_pred hcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
...+|+|||.|..|...|..|++.|. +++++|..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecC
Confidence 45799999999999999999999998 49998864
No 417
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=87.80 E-value=2.5 Score=35.59 Aligned_cols=78 Identities=18% Similarity=0.141 Sum_probs=51.4
Q ss_pred hcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeec
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTL 230 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 230 (525)
++.+|+-+||| .|......+.+..-.+++-+|.+. .-.+.+++++.+....-+|..+...
T Consensus 1 p~~~vLDlGcG-~G~~~~~l~~~~~~~~v~gvD~s~-------------------~~~~~a~~~~~~~~~~~~i~~~~~d 60 (112)
T PF12847_consen 1 PGGRVLDLGCG-TGRLSIALARLFPGARVVGVDISP-------------------EMLEIARERAAEEGLSDRITFVQGD 60 (112)
T ss_dssp TTCEEEEETTT-TSHHHHHHHHHHTTSEEEEEESSH-------------------HHHHHHHHHHHHTTTTTTEEEEESC
T ss_pred CCCEEEEEcCc-CCHHHHHHHhcCCCCEEEEEeCCH-------------------HHHHHHHHHHHhcCCCCCeEEEECc
Confidence 46899999999 566555555544555688887744 1245666777555555677777666
Q ss_pred CCcchHhHhhccCCeEeecC
Q psy13373 231 LDTSNACDIIRRYDVVVDAC 250 (525)
Q Consensus 231 i~~~~~~~~~~~~dvVi~~~ 250 (525)
+ ....+....||+|+...
T Consensus 61 ~--~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 61 A--EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp C--HGGTTTSSCEEEEEECS
T ss_pred c--ccCcccCCCCCEEEECC
Confidence 6 22345567799999865
No 418
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=87.76 E-value=3 Score=40.61 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=30.6
Q ss_pred HHhhcCcEEEEc-CCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 148 EKLLNASVLIVG-CGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 148 ~kL~~~~VlViG-~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
..+++++|+|.| .|++|..+++.|+..|. ++.++|.+
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~ 45 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRT 45 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCC
Confidence 357889999997 55699999999999997 67777664
No 419
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.70 E-value=1.7 Score=44.41 Aligned_cols=77 Identities=19% Similarity=0.345 Sum_probs=55.7
Q ss_pred HhhcCcEEEEc-CCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEe
Q psy13373 149 KLLNASVLIVG-CGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAY 227 (525)
Q Consensus 149 kL~~~~VlViG-~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~ 227 (525)
.+++++|+||| .|-+|..+|.+|...|. .+++.+..+-
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~~rT~---------------------------------------- 193 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAHSRTR---------------------------------------- 193 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCC-EEEEECCCCC----------------------------------------
Confidence 47899999999 88899999999999986 5666532110
Q ss_pred eecCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEeccc
Q psy13373 228 QTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASAL 276 (525)
Q Consensus 228 ~~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~ 276 (525)
+..+..+.+|+||.|+.... .+.....+.|.-+|+.++.
T Consensus 194 -------~l~e~~~~ADIVIsavg~~~---~v~~~~lk~GavVIDvGin 232 (296)
T PRK14188 194 -------DLPAVCRRADILVAAVGRPE---MVKGDWIKPGATVIDVGIN 232 (296)
T ss_pred -------CHHHHHhcCCEEEEecCChh---hcchheecCCCEEEEcCCc
Confidence 12456778999999988764 3444445666767777654
No 420
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=87.69 E-value=7.3 Score=40.36 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=25.9
Q ss_pred hcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 151 LNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 151 ~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
.+++|+|.|. |.+|+.+++.|+..|.. +.+++.
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~~-V~~~~r 42 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGYT-VHATLR 42 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence 3568999994 77999999999999874 555443
No 421
>PRK07109 short chain dehydrogenase; Provisional
Probab=87.66 E-value=2 Score=44.44 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=28.9
Q ss_pred HhhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 149 KLLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 149 kL~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
.|++++|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R 40 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGA-KVVLLAR 40 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 467788999985 7799999999999997 4777653
No 422
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=87.63 E-value=1.3 Score=50.75 Aligned_cols=39 Identities=21% Similarity=0.480 Sum_probs=35.7
Q ss_pred HHhhcCcEEEEcCCcchHHHHHHhHHcCCc--eEEEEeCCc
Q psy13373 148 EKLLNASVLIVGCGGTGSPCIQYLAASGVG--TLGLADYDR 186 (525)
Q Consensus 148 ~kL~~~~VlViG~GglGs~ia~~La~~GVg--~i~lvD~d~ 186 (525)
++|.+.||++.|+|+.|..+++.|...|+. +|.++|..=
T Consensus 181 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G 221 (752)
T PRK07232 181 KKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKG 221 (752)
T ss_pred CChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCC
Confidence 588999999999999999999999999995 999999654
No 423
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=87.60 E-value=4.1 Score=41.97 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=27.9
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
+++++|+|.|+ |.+|+++++.|+..|.. +.++|.
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~~-V~~~~r 38 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGYE-VHGIIR 38 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEEec
Confidence 45688999995 77999999999999974 666654
No 424
>PRK09072 short chain dehydrogenase; Provisional
Probab=87.54 E-value=2.8 Score=41.36 Aligned_cols=35 Identities=37% Similarity=0.552 Sum_probs=29.2
Q ss_pred hhcCcEEEEc-CCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 150 LLNASVLIVG-CGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 150 L~~~~VlViG-~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
|++++|+|.| .|++|.++++.|+..|. ++.+++.+
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~ 38 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRN 38 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECC
Confidence 5678899998 57899999999999996 47777653
No 425
>PRK06487 glycerate dehydrogenase; Provisional
Probab=87.53 E-value=0.43 Score=49.29 Aligned_cols=86 Identities=17% Similarity=0.277 Sum_probs=57.4
Q ss_pred HHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEe
Q psy13373 148 EKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAY 227 (525)
Q Consensus 148 ~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~ 227 (525)
..|.+++|.|||+|.+|.++|+.|...|.. +..+|... .... .
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm~-V~~~~~~~------------~~~~-------------------~----- 186 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEAFGMR-VLIGQLPG------------RPAR-------------------P----- 186 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhCCCE-EEEECCCC------------Cccc-------------------c-----
Confidence 469999999999999999999999988884 65555421 0000 0
Q ss_pred eecCCcchHhHhhccCCeEeecCC-CHHHHHHHHHHhH---hcCCcEEEec
Q psy13373 228 QTLLDTSNACDIIRRYDVVVDACD-NAPTRYLLNDACL---REGRPLVSAS 274 (525)
Q Consensus 228 ~~~i~~~~~~~~~~~~dvVi~~~d-~~~~r~~l~~~~~---~~~~p~i~~~ 274 (525)
......++++.+|+|+.+.- +.+++.++++... +.+.-+|+.+
T Consensus 187 ----~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~a 233 (317)
T PRK06487 187 ----DRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTA 233 (317)
T ss_pred ----cccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECC
Confidence 00135678899998875544 5567777776543 3344466653
No 426
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=87.51 E-value=2.7 Score=42.12 Aligned_cols=94 Identities=20% Similarity=0.255 Sum_probs=60.7
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecCC
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLD 232 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~ 232 (525)
.+|+|+|.-+-|..++..|...|..-+..+ ..+.|... +.+ .+... ++...++
T Consensus 1 m~ILvlGGT~egr~la~~L~~~g~~v~~s~-----------------~t~~~~~~-------~~~-~g~~~--v~~g~l~ 53 (256)
T TIGR00715 1 MTVLLMGGTVDSRAIAKGLIAQGIEILVTV-----------------TTSEGKHL-------YPI-HQALT--VHTGALD 53 (256)
T ss_pred CeEEEEechHHHHHHHHHHHhCCCeEEEEE-----------------ccCCcccc-------ccc-cCCce--EEECCCC
Confidence 379999997779999999999986433322 11112111 111 11122 3334455
Q ss_pred cchHhHhhc--cCCeEeecCCCHHHH--HHHHHHhHhcCCcEEEe
Q psy13373 233 TSNACDIIR--RYDVVVDACDNAPTR--YLLNDACLREGRPLVSA 273 (525)
Q Consensus 233 ~~~~~~~~~--~~dvVi~~~d~~~~r--~~l~~~~~~~~~p~i~~ 273 (525)
.+...+++. +.|+|||++-.++.. ..+.+.|.+.++|++-.
T Consensus 54 ~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 54 PQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred HHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 555556665 489999999988754 45788999999998864
No 427
>PRK06940 short chain dehydrogenase; Provisional
Probab=87.49 E-value=3.3 Score=41.38 Aligned_cols=31 Identities=32% Similarity=0.651 Sum_probs=25.4
Q ss_pred cCcEEEEcCCcchHHHHHHhHHcCCceEEEEeC
Q psy13373 152 NASVLIVGCGGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 152 ~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
++.++|.|+||+|.++++.|+ .|. ++.++|.
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r 32 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADY 32 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeC
Confidence 457888899999999999996 684 6777654
No 428
>PRK06172 short chain dehydrogenase; Provisional
Probab=87.48 E-value=2.1 Score=41.78 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=28.3
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
|++++|+|.|+ |++|.++++.|+..|. ++.+++.
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r 39 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADR 39 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 56789999985 6799999999999996 4777654
No 429
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=87.40 E-value=0.6 Score=48.04 Aligned_cols=33 Identities=30% Similarity=0.379 Sum_probs=29.5
Q ss_pred CcEEEEcC-CcchHHHHHHhHHcCCc-eEEEEeCC
Q psy13373 153 ASVLIVGC-GGTGSPCIQYLAASGVG-TLGLADYD 185 (525)
Q Consensus 153 ~~VlViG~-GglGs~ia~~La~~GVg-~i~lvD~d 185 (525)
.+|.|+|+ |.+|+.++..|+..|+. +|+++|.+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~ 35 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRP 35 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECc
Confidence 47999998 99999999999999974 79999984
No 430
>PRK12861 malic enzyme; Reviewed
Probab=87.40 E-value=1.5 Score=50.48 Aligned_cols=39 Identities=18% Similarity=0.440 Sum_probs=35.8
Q ss_pred HHhhcCcEEEEcCCcchHHHHHHhHHcCCc--eEEEEeCCc
Q psy13373 148 EKLLNASVLIVGCGGTGSPCIQYLAASGVG--TLGLADYDR 186 (525)
Q Consensus 148 ~kL~~~~VlViG~GglGs~ia~~La~~GVg--~i~lvD~d~ 186 (525)
++|++.||++.|+|+-|..+++.|...|+. +|.++|..=
T Consensus 185 k~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~G 225 (764)
T PRK12861 185 KSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEG 225 (764)
T ss_pred CChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCC
Confidence 688999999999999999999999999996 899999654
No 431
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=87.38 E-value=2.2 Score=44.50 Aligned_cols=91 Identities=13% Similarity=0.256 Sum_probs=54.7
Q ss_pred cEEEEcC-CcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecCC
Q psy13373 154 SVLIVGC-GGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLD 232 (525)
Q Consensus 154 ~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~ 232 (525)
+|+|+|+ |.+|.++++.|...|...+.|+ ++.+..+.|+.=. . ....+...+ ++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~-------------~~as~~~~g~~~~---------~-~~~~~~~~~--~~ 55 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLV-------------LLASDRSAGRKVT---------F-KGKELEVNE--AK 55 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEE-------------EEeccccCCCeee---------e-CCeeEEEEe--CC
Confidence 6899994 5599999999998766544432 1223333444211 0 112222211 22
Q ss_pred cchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEec
Q psy13373 233 TSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSAS 274 (525)
Q Consensus 233 ~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~ 274 (525)
.+.+.++|+||.|+....++.+..++ .+.|..+|+.+
T Consensus 56 ----~~~~~~~D~v~~a~g~~~s~~~a~~~-~~~G~~VID~s 92 (339)
T TIGR01296 56 ----IESFEGIDIALFSAGGSVSKEFAPKA-AKCGAIVIDNT 92 (339)
T ss_pred ----hHHhcCCCEEEECCCHHHHHHHHHHH-HHCCCEEEECC
Confidence 22347899999999988777665554 55677788754
No 432
>PRK07589 ornithine cyclodeaminase; Validated
Probab=87.37 E-value=2 Score=45.01 Aligned_cols=75 Identities=13% Similarity=0.225 Sum_probs=53.0
Q ss_pred cCcEEEEcCCcchHHHHHHhHH-cCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeec
Q psy13373 152 NASVLIVGCGGTGSPCIQYLAA-SGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTL 230 (525)
Q Consensus 152 ~~~VlViG~GglGs~ia~~La~-~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 230 (525)
..+++|||+|..+..-++.+.. -.+.+|.+++.+ ..|++..++++++. .+++...
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~-------------------~~~a~~~~~~~~~~--~~~v~~~--- 184 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDID-------------------PAATAKLARNLAGP--GLRIVAC--- 184 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCC-------------------HHHHHHHHHHHHhc--CCcEEEe---
Confidence 4789999999999888776653 378888886432 24677777777762 3444442
Q ss_pred CCcchHhHhhccCCeEeecCCCH
Q psy13373 231 LDTSNACDIIRRYDVVVDACDNA 253 (525)
Q Consensus 231 i~~~~~~~~~~~~dvVi~~~d~~ 253 (525)
++..+.+.++|+|+.||.+.
T Consensus 185 ---~~~~~av~~ADIIvtaT~S~ 204 (346)
T PRK07589 185 ---RSVAEAVEGADIITTVTADK 204 (346)
T ss_pred ---CCHHHHHhcCCEEEEecCCC
Confidence 23567889999999998643
No 433
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=87.36 E-value=2.2 Score=36.90 Aligned_cols=85 Identities=20% Similarity=0.389 Sum_probs=46.1
Q ss_pred cCCcchHHHHHHhHHc----CCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecCCcc
Q psy13373 159 GCGGTGSPCIQYLAAS----GVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDTS 234 (525)
Q Consensus 159 G~GglGs~ia~~La~~----GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i~~~ 234 (525)
|+|.+|+.+++.|... ++.-..+.|.+. ++... ...... ...+ ..
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~----------~~~~~------------~~~~~~-~~~~--------~~ 49 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSM----------LISKD------------WAASFP-DEAF--------TT 49 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSE----------EEETT------------HHHHHT-HSCE--------ES
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCc----------hhhhh------------hhhhcc-cccc--------cC
Confidence 8999999999999976 445455554430 11110 111111 1111 11
Q ss_pred hHhHhhc--cCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecc
Q psy13373 235 NACDIIR--RYDVVVDACDNAPTRYLLNDACLREGRPLVSASA 275 (525)
Q Consensus 235 ~~~~~~~--~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~ 275 (525)
+..+++. +.|+||+|+.......++ ..+.++|+.+|.+..
T Consensus 50 ~~~~~~~~~~~dvvVE~t~~~~~~~~~-~~~L~~G~~VVt~nk 91 (117)
T PF03447_consen 50 DLEELIDDPDIDVVVECTSSEAVAEYY-EKALERGKHVVTANK 91 (117)
T ss_dssp SHHHHHTHTT-SEEEE-SSCHHHHHHH-HHHHHTTCEEEES-H
T ss_pred CHHHHhcCcCCCEEEECCCchHHHHHH-HHHHHCCCeEEEECH
Confidence 2345665 799999998776655443 345678898887654
No 434
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=87.33 E-value=3.8 Score=42.41 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=26.8
Q ss_pred CcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 153 ASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 153 ~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
++|+|.|+ |.+|+.+++.|...|...+.++|.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~ 34 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDK 34 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEec
Confidence 47999985 669999999999999876777664
No 435
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=87.29 E-value=4.9 Score=41.46 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=25.4
Q ss_pred CcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 153 ASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 153 ~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
++|+|.|+ |.+|+++++.|...|. +++++|.
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r 32 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY-EVHGLIR 32 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC-EEEEEec
Confidence 47899985 6799999999999997 4666654
No 436
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=87.23 E-value=3.3 Score=43.54 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=27.6
Q ss_pred hcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 151 LNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 151 ~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
++++|+|.|. |-+|+++++.|...|. +++.+|.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r 53 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH-YIIASDW 53 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEe
Confidence 4578999997 6699999999999885 6777764
No 437
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=87.23 E-value=1.3 Score=45.35 Aligned_cols=71 Identities=18% Similarity=0.188 Sum_probs=47.2
Q ss_pred EEcCCcchHHHHHHhHHcCC-ceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCc--EEEEeeecCCc
Q psy13373 157 IVGCGGTGSPCIQYLAASGV-GTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNT--IVHAYQTLLDT 233 (525)
Q Consensus 157 ViG~GglGs~ia~~La~~GV-g~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v--~v~~~~~~i~~ 233 (525)
|||+|.+|+.+|..|+..|+ .+|.|+|.. +.|++..+.-|....+.. .+....
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~-------------------~~~~~g~a~Dl~~~~~~~~~~~~i~~----- 56 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDIN-------------------KDKAEGEAMDLQHAASFLPTPKKIRS----- 56 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------CChhhHHHHHHHHhhcccCCCeEEec-----
Confidence 68999999999999999887 579998652 234555555555543222 122111
Q ss_pred chHhHhhccCCeEeecCCC
Q psy13373 234 SNACDIIRRYDVVVDACDN 252 (525)
Q Consensus 234 ~~~~~~~~~~dvVi~~~d~ 252 (525)
...+.++++|+||.+...
T Consensus 57 -~~~~~~~daDivVitag~ 74 (299)
T TIGR01771 57 -GDYSDCKDADLVVITAGA 74 (299)
T ss_pred -CCHHHHCCCCEEEECCCC
Confidence 124678999999876654
No 438
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=87.19 E-value=0.62 Score=48.61 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=31.5
Q ss_pred cCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcc
Q psy13373 152 NASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRV 187 (525)
Q Consensus 152 ~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V 187 (525)
...|+|||.|-+|+.+|..|++.|. +++|+|.+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence 4579999999999999999999996 6999998764
No 439
>PRK06914 short chain dehydrogenase; Provisional
Probab=87.11 E-value=2.3 Score=42.32 Aligned_cols=34 Identities=18% Similarity=0.112 Sum_probs=26.8
Q ss_pred hcCcEEEEc-CCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 151 LNASVLIVG-CGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 151 ~~~~VlViG-~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
++++|+|.| .|++|..+++.|+..|.. +.+++.+
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~-V~~~~r~ 36 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYL-VIATMRN 36 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCE-EEEEeCC
Confidence 456789998 578999999999999975 6665543
No 440
>PRK08324 short chain dehydrogenase; Validated
Probab=87.08 E-value=4.6 Score=46.24 Aligned_cols=34 Identities=38% Similarity=0.585 Sum_probs=28.7
Q ss_pred hcCcEEEEc-CCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 151 LNASVLIVG-CGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 151 ~~~~VlViG-~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
.+++|+|.| .|++|..+++.|+..|. ++.++|.+
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~ 455 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLD 455 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCC
Confidence 457899999 58999999999999998 68887653
No 441
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=87.08 E-value=3.4 Score=47.02 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=30.8
Q ss_pred hcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
..++|+|||.|..|...|..|++.|. +++|+|...
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~ 226 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANE 226 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence 45799999999999999999999997 599998653
No 442
>PRK06392 homoserine dehydrogenase; Provisional
Probab=87.07 E-value=2.6 Score=43.69 Aligned_cols=20 Identities=20% Similarity=0.512 Sum_probs=19.0
Q ss_pred cEEEEcCCcchHHHHHHhHH
Q psy13373 154 SVLIVGCGGTGSPCIQYLAA 173 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~ 173 (525)
+|.|+|+|.+|+.+++.|..
T Consensus 2 rVaIiGfG~VG~~va~~L~~ 21 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKS 21 (326)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 79999999999999999987
No 443
>PRK10537 voltage-gated potassium channel; Provisional
Probab=86.93 E-value=3 Score=44.49 Aligned_cols=90 Identities=11% Similarity=-0.007 Sum_probs=58.4
Q ss_pred HHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEe
Q psy13373 148 EKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAY 227 (525)
Q Consensus 148 ~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~ 227 (525)
...++.+|+|+|.|.+|.++++.|...|. .++++|.|.++ +.. ..+. ..+
T Consensus 236 ~~~~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~------~~~---------------------~~g~--~vI 285 (393)
T PRK10537 236 HMHRKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLE------HRL---------------------PDDA--DLI 285 (393)
T ss_pred hcccCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhh------hhc---------------------cCCC--cEE
Confidence 33456899999999999999999998886 57888876321 000 0111 123
Q ss_pred eecCCcchHh--HhhccCCeEeecCCCHHHHHHHHHHhHhcC
Q psy13373 228 QTLLDTSNAC--DIIRRYDVVVDACDNAPTRYLLNDACLREG 267 (525)
Q Consensus 228 ~~~i~~~~~~--~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~ 267 (525)
..+.++++.. .-+++++.||.++++.+....+-..+++.+
T Consensus 286 ~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~ 327 (393)
T PRK10537 286 PGDSSDSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMS 327 (393)
T ss_pred EeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhC
Confidence 3344433322 235688999988888776666666666655
No 444
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.90 E-value=3.1 Score=41.19 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=28.1
Q ss_pred hhcCcEEEEcC---CcchHHHHHHhHHcCCceEEEEe
Q psy13373 150 LLNASVLIVGC---GGTGSPCIQYLAASGVGTLGLAD 183 (525)
Q Consensus 150 L~~~~VlViG~---GglGs~ia~~La~~GVg~i~lvD 183 (525)
++++.++|.|. +|+|.++|+.|++.|.. +.+++
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~~-v~~~~ 40 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGAK-LVFTY 40 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCE-EEEec
Confidence 67789999997 59999999999999984 66654
No 445
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=86.85 E-value=2.5 Score=42.96 Aligned_cols=30 Identities=30% Similarity=0.355 Sum_probs=25.1
Q ss_pred cEEEEcC-CcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 154 SVLIVGC-GGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 154 ~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
+|+|.|+ |-+|+.+++.|...| +++.+|..
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~ 32 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIALDVH 32 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEeccc
Confidence 7999997 669999999999888 57777653
No 446
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=86.82 E-value=2.6 Score=43.08 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=27.7
Q ss_pred hhcCcEEEEc-CCcchHHHHHHhHHcCCceEEEEeC
Q psy13373 150 LLNASVLIVG-CGGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 150 L~~~~VlViG-~GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
+.+++|+|.| .||+|.++++.|+..|. ++.+++.
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r 38 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGW-HVIMACR 38 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEEC
Confidence 4567899998 47899999999999995 5777654
No 447
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=86.78 E-value=1.9 Score=43.94 Aligned_cols=33 Identities=30% Similarity=0.483 Sum_probs=28.8
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
.+|.|||+|-+|..++.+|++.|. +++++|.+.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~ 34 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNP 34 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence 379999999999999999999996 688887653
No 448
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=86.76 E-value=0.76 Score=46.74 Aligned_cols=33 Identities=39% Similarity=0.460 Sum_probs=29.2
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
++|.|||+|-+|+.+|..|+.+|. +++++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999995 688888643
No 449
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=86.75 E-value=1.4 Score=47.40 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=51.3
Q ss_pred cEEEEcCCcchHHHHH--HhH---HcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEee
Q psy13373 154 SVLIVGCGGTGSPCIQ--YLA---ASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQ 228 (525)
Q Consensus 154 ~VlViG~GglGs~ia~--~La---~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 228 (525)
+|.|||+|.+|...+. .++ .....+|.|+|.|.= -+.. -...+.+.+....+..+|...
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e---~l~~------------~~~~~~~~~~~~~~~~~I~~t- 65 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEE---RLET------------VEILAKKIVEELGAPLKIEAT- 65 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHH---HHHH------------HHHHHHHHHHhcCCCeEEEEe-
Confidence 6999999999988665 454 222358999886541 1110 011123333333334444421
Q ss_pred ecCCcchHhHhhccCCeEeecCCCHHHHHHHH--HHhHhcCC
Q psy13373 229 TLLDTSNACDIIRRYDVVVDACDNAPTRYLLN--DACLREGR 268 (525)
Q Consensus 229 ~~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~--~~~~~~~~ 268 (525)
. +..+.++++|+||.+.-....+.... +...++++
T Consensus 66 ----t-D~~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~ 102 (423)
T cd05297 66 ----T-DRREALDGADFVINTIQVGGHEYTETDFEIPEKYGY 102 (423)
T ss_pred ----C-CHHHHhcCCCEEEEeeEecCccchhhhhhhHHHcCe
Confidence 1 23567889999998776433332222 35556665
No 450
>PRK12746 short chain dehydrogenase; Provisional
Probab=86.71 E-value=2 Score=41.93 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=25.8
Q ss_pred HHhhcCcEEEEc-CCcchHHHHHHhHHcCCc
Q psy13373 148 EKLLNASVLIVG-CGGTGSPCIQYLAASGVG 177 (525)
Q Consensus 148 ~kL~~~~VlViG-~GglGs~ia~~La~~GVg 177 (525)
++|++++|+|.| .|++|+++++.|+..|..
T Consensus 2 ~~~~~~~ilItGasg~iG~~la~~l~~~G~~ 32 (254)
T PRK12746 2 KNLDGKVALVTGASRGIGRAIAMRLANDGAL 32 (254)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCE
Confidence 457788999998 567999999999999875
No 451
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=86.67 E-value=2.6 Score=40.59 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=28.9
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
|.+++|+|.|+ |++|..+++.|+..|.. +.+++.+
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~ 38 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSN 38 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 45678999985 77999999999999987 7776554
No 452
>PRK00811 spermidine synthase; Provisional
Probab=86.67 E-value=3.5 Score=41.82 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=26.1
Q ss_pred hcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
...+|+++|+|+ |......|...++.++++||-|.
T Consensus 76 ~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~ 110 (283)
T PRK00811 76 NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDE 110 (283)
T ss_pred CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCH
Confidence 357999999985 55444445556899999998776
No 453
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=86.67 E-value=0.95 Score=52.02 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=28.9
Q ss_pred CcEEEEcCCcchHHHHHHhH-HcCCceEEEEeCCc
Q psy13373 153 ASVLIVGCGGTGSPCIQYLA-ASGVGTLGLADYDR 186 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La-~~GVg~i~lvD~d~ 186 (525)
++|.|||+|..|+.||..++ .+|+ .++++|.+.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~ 343 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINP 343 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCH
Confidence 57999999999999999999 8896 588888753
No 454
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=86.64 E-value=2.7 Score=43.83 Aligned_cols=92 Identities=15% Similarity=0.255 Sum_probs=54.0
Q ss_pred CcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeecC
Q psy13373 153 ASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLL 231 (525)
Q Consensus 153 ~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~i 231 (525)
.+|+|+|+ |-+|.++++.|...+...+.|. .+.+.+..|++= . ....... +
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~-------------~v~s~~~aG~~l--------~--~~~~~l~-----~ 56 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLH-------------LLASSESAGHSV--------P--FAGKNLR-----V 56 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEE-------------EEECcccCCCee--------c--cCCcceE-----E
Confidence 58999997 4599999999996654433332 122334445541 1 1111111 1
Q ss_pred CcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEec
Q psy13373 232 DTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSAS 274 (525)
Q Consensus 232 ~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~ 274 (525)
.+....+ ++++|+|+.|+..-.++. +...+.+.|+.+|+.+
T Consensus 57 ~~~~~~~-~~~vD~vFla~p~~~s~~-~v~~~~~~G~~VIDlS 97 (336)
T PRK05671 57 REVDSFD-FSQVQLAFFAAGAAVSRS-FAEKARAAGCSVIDLS 97 (336)
T ss_pred eeCChHH-hcCCCEEEEcCCHHHHHH-HHHHHHHCCCeEEECc
Confidence 1111123 478999999998654554 4444567789898853
No 455
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=86.60 E-value=0.7 Score=48.88 Aligned_cols=35 Identities=34% Similarity=0.370 Sum_probs=30.9
Q ss_pred HhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeC
Q psy13373 149 KLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 149 kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
.|.+++|.|||+|.+|+.+|+.|...|+. +..+|+
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp 147 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDP 147 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECC
Confidence 48999999999999999999999999985 556664
No 456
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=86.55 E-value=0.84 Score=47.71 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=36.0
Q ss_pred hcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCC
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNL 192 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL 192 (525)
.+.+|+|||.|-+|..+|..|++.|. +++++|.+.+...+-
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s 43 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAA 43 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcch
Confidence 46789999999999999999999999 999999988855333
No 457
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=86.49 E-value=0.99 Score=51.87 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=29.5
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
++|.|||+|..|+.||..++.+|+ .++|+|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~ 346 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQ 346 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 479999999999999999999997 588888764
No 458
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.44 E-value=2 Score=47.02 Aligned_cols=90 Identities=26% Similarity=0.260 Sum_probs=55.1
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeee
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQT 229 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~ 229 (525)
+.+++|+|+|+|..|..+++.|...|. ++++.|... .+ .. .+++. .+.+. ..
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~-------------------~~---~~-~l~~~--g~~~~--~~ 61 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDP-------------------DA---LR-PHAER--GVATV--ST 61 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCH-------------------HH---HH-HHHhC--CCEEE--cC
Confidence 357899999999999999999999996 577777421 01 11 13332 23222 11
Q ss_pred cCCcchHhHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEE
Q psy13373 230 LLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVS 272 (525)
Q Consensus 230 ~i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~ 272 (525)
.. ..+.+.++|+||.+..-.... -+-..+++.++|++.
T Consensus 62 ~~----~~~~l~~~D~VV~SpGi~~~~-p~~~~a~~~gi~v~~ 99 (488)
T PRK03369 62 SD----AVQQIADYALVVTSPGFRPTA-PVLAAAAAAGVPIWG 99 (488)
T ss_pred cc----hHhHhhcCCEEEECCCCCCCC-HHHHHHHHCCCcEee
Confidence 11 234567789999765433322 234455677888775
No 459
>PLN02503 fatty acyl-CoA reductase 2
Probab=86.44 E-value=5.2 Score=45.07 Aligned_cols=130 Identities=15% Similarity=0.145 Sum_probs=72.3
Q ss_pred HHHHHHhhcCcEEEEcCCc-chHHHHHHhHHc--CCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCC
Q psy13373 144 VMGQEKLLNASVLIVGCGG-TGSPCIQYLAAS--GVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINR 220 (525)
Q Consensus 144 ~~~q~kL~~~~VlViG~Gg-lGs~ia~~La~~--GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp 220 (525)
..-++-+++++|+|-|+.| ||..+++.|.+. .|++|.+.....=..+-..|.. ..+ +-..+-+.|++.++
T Consensus 111 ~~I~~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~----~~l---~~~~lf~~l~~~~g 183 (605)
T PLN02503 111 IGIAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLK----NEV---IDAELFKCLQETHG 183 (605)
T ss_pred cchhhhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHH----HHH---hhhhhHHHHHHhcC
Confidence 3347779999999999855 999999999986 4788887643221111111100 000 00112234445444
Q ss_pred C-------cEEEEeeecCCcc-------hHhHhhccCCeEeecCCCHH------H--------HHHHHHHhHhcC--CcE
Q psy13373 221 N-------TIVHAYQTLLDTS-------NACDIIRRYDVVVDACDNAP------T--------RYLLNDACLREG--RPL 270 (525)
Q Consensus 221 ~-------v~v~~~~~~i~~~-------~~~~~~~~~dvVi~~~d~~~------~--------r~~l~~~~~~~~--~p~ 270 (525)
. -++..+..+++.. ....+.++.|+||.+..... . -..+-++|.+.+ ..+
T Consensus 184 ~~~~~~~~~Ki~~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~f 263 (605)
T PLN02503 184 KSYQSFMLSKLVPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKCKKLKLF 263 (605)
T ss_pred ccccccccccEEEEEeeCCCcccCCCHHHHHHHHhcCCEEEECccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCCeE
Confidence 2 3677777776653 22345567999996654321 1 122445665543 357
Q ss_pred EEecccCccc
Q psy13373 271 VSASALGLEG 280 (525)
Q Consensus 271 i~~~~~g~~G 280 (525)
++.++...+|
T Consensus 264 V~vSTayVyG 273 (605)
T PLN02503 264 LQVSTAYVNG 273 (605)
T ss_pred EEccCceeec
Confidence 7776644333
No 460
>KOG2016|consensus
Probab=86.42 E-value=0.7 Score=48.93 Aligned_cols=45 Identities=24% Similarity=0.352 Sum_probs=39.0
Q ss_pred cccchhHHHHHHHHHHHHHHHhCC-CCCCeEEEEEcCCCeeEEeee
Q psy13373 314 VLGPVPGVMGTLQAVETIKLLIGL-PVMDKLLVYDAELSKFLSVKL 358 (525)
Q Consensus 314 ~~~~~~~ivg~~~a~e~lk~l~g~-~~l~~~~~~d~~~~~~~~~~l 358 (525)
.+-.+.+++|+++|+|+||+++.. -|+++.++||+.+.+..++++
T Consensus 478 ElH~VsAfiGGiaaQEvIKLiTkQyvPidNTFIfnGi~~~SaT~Kl 523 (523)
T KOG2016|consen 478 ELHVVSAFIGGIAAQEVIKLITKQYVPIDNTFIFNGITQESATFKL 523 (523)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhceecccceeEecccccccceecC
Confidence 466788999999999999999998 677999999999888777653
No 461
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=86.30 E-value=3.9 Score=44.22 Aligned_cols=106 Identities=17% Similarity=0.124 Sum_probs=69.5
Q ss_pred cEEEEcCCcchH-HHHHHhHH----cCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEee
Q psy13373 154 SVLIVGCGGTGS-PCIQYLAA----SGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQ 228 (525)
Q Consensus 154 ~VlViG~GglGs-~ia~~La~----~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 228 (525)
||+|||+|+.=+ .+...|+. .++++|.|+|-|. ..|.+ =...+++.+++.++.++|+...
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~---~rl~~------------v~~l~~~~~~~~g~~~~v~~Tt 66 (437)
T cd05298 2 KIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDA---ERQEK------------VAEAVKILFKENYPEIKFVYTT 66 (437)
T ss_pred eEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCH---HHHHH------------HHHHHHHHHHhhCCCeEEEEEC
Confidence 799999998533 56666653 4678999999765 22221 0234555566667677776542
Q ss_pred ecCCcchHhHhhccCCeEeecCCC--HHHHHHHHHHhHhcCCcEEEecccCccceE
Q psy13373 229 TLLDTSNACDIIRRYDVVVDACDN--APTRYLLNDACLREGRPLVSASALGLEGQL 282 (525)
Q Consensus 229 ~~i~~~~~~~~~~~~dvVi~~~d~--~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v 282 (525)
+..+.++++|+||.+.-- .+.|..-.+++.++|+ +-..+.|..|..
T Consensus 67 ------dr~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi--~gqET~G~GG~~ 114 (437)
T cd05298 67 ------DPEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGV--VGQETCGPGGFA 114 (437)
T ss_pred ------CHHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCc--ceecCccHHHHH
Confidence 246789999999976432 3556656677899996 544676766643
No 462
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=86.28 E-value=0.75 Score=47.28 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=29.5
Q ss_pred cCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 152 NASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 152 ~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
..+|+|+|+|++|+.+|..|+.+| .+++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC
Confidence 458999999999999999999999 5688877654
No 463
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=86.28 E-value=7.5 Score=39.74 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=24.4
Q ss_pred cEEEEc-CCcchHHHHHHhHHcCCceEEEEe
Q psy13373 154 SVLIVG-CGGTGSPCIQYLAASGVGTLGLAD 183 (525)
Q Consensus 154 ~VlViG-~GglGs~ia~~La~~GVg~i~lvD 183 (525)
+|+|.| .|.+|+.+++.|+..|.. ++++|
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~ 31 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNGHD-VVILD 31 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCe-EEEEe
Confidence 699999 588999999999999864 66664
No 464
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.28 E-value=2.8 Score=40.71 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=24.9
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceE
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTL 179 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i 179 (525)
|.+++|+|.|. |++|.++++.|+..|..-+
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~ 32 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIA 32 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEE
Confidence 45678999985 6799999999999997644
No 465
>KOG0409|consensus
Probab=86.27 E-value=2 Score=43.64 Aligned_cols=59 Identities=20% Similarity=0.362 Sum_probs=40.3
Q ss_pred CCCHHHHhhhhhccccc-ccCHHHHHHhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEe
Q psy13373 124 KFSKDITERYSRQILLD-QVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLAD 183 (525)
Q Consensus 124 ~l~~~~~~rysRq~~l~-~~G~~~q~kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD 183 (525)
.+++..++.++|.+.-+ +--...|.-=+..+|..||+|-.|+.++.||..+|.+ ++++|
T Consensus 6 ~~~~~~l~~~~~~~~~~~~~~~s~~~~~s~~~iGFIGLG~MG~~M~~nLik~G~k-VtV~d 65 (327)
T KOG0409|consen 6 KLAPSILEAFSRRLVKASETAMSSRITPSKTRIGFIGLGNMGSAMVSNLIKAGYK-VTVYD 65 (327)
T ss_pred hcccHHHHhhcccccccccccccccCCcccceeeEEeeccchHHHHHHHHHcCCE-EEEEe
Confidence 34555666677766531 1100112222478999999999999999999999986 78876
No 466
>PRK08226 short chain dehydrogenase; Provisional
Probab=86.21 E-value=2.9 Score=41.13 Aligned_cols=35 Identities=34% Similarity=0.442 Sum_probs=29.3
Q ss_pred HhhcCcEEEEc-CCcchHHHHHHhHHcCCceEEEEeC
Q psy13373 149 KLLNASVLIVG-CGGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 149 kL~~~~VlViG-~GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
+|++++++|.| .|++|..+++.|+..|.. +.+++.
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~-Vv~~~r 38 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGAN-LILLDI 38 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecC
Confidence 57789999998 667999999999999985 777654
No 467
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=86.19 E-value=3.1 Score=40.70 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=29.6
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
|++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~ 44 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRN 44 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCC
Confidence 67889999985 5699999999999997 68877654
No 468
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=86.15 E-value=2.3 Score=43.88 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=49.5
Q ss_pred cCcEEEEcCCcchHHHHHHhHH-cCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeec
Q psy13373 152 NASVLIVGCGGTGSPCIQYLAA-SGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTL 230 (525)
Q Consensus 152 ~~~VlViG~GglGs~ia~~La~-~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 230 (525)
..++.|+|+|.-+..-+..|.. .++++|.++|.+. .+++.+++++++ . .+.+....
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~-------------------~~~~~~~~~~~~-~-~~~v~~~~-- 184 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSP-------------------ERAEAFAARLRD-L-GVPVVAVD-- 184 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSH-------------------HHHHHHHHHHHC-C-CTCEEEES--
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccCh-------------------hHHHHHHHhhcc-c-cccceecc--
Confidence 3689999999999988888765 5799999976422 567888888888 3 66666542
Q ss_pred CCcchHhHhhccCCeEeecCCCH
Q psy13373 231 LDTSNACDIIRRYDVVVDACDNA 253 (525)
Q Consensus 231 i~~~~~~~~~~~~dvVi~~~d~~ 253 (525)
+..+.++++|+|+.||.+.
T Consensus 185 ----~~~~av~~aDii~taT~s~ 203 (313)
T PF02423_consen 185 ----SAEEAVRGADIIVTATPST 203 (313)
T ss_dssp ----SHHHHHTTSSEEEE----S
T ss_pred ----chhhhcccCCEEEEccCCC
Confidence 2567899999999987654
No 469
>PRK08589 short chain dehydrogenase; Validated
Probab=86.10 E-value=2.3 Score=42.36 Aligned_cols=34 Identities=29% Similarity=0.360 Sum_probs=28.1
Q ss_pred HhhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEe
Q psy13373 149 KLLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLAD 183 (525)
Q Consensus 149 kL~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD 183 (525)
+|++++|+|.|+ ||+|.++++.|+..|.. +.+++
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~-vi~~~ 37 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAY-VLAVD 37 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEe
Confidence 467889999986 67999999999999974 66554
No 470
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=86.07 E-value=3.4 Score=43.19 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=28.3
Q ss_pred cCcEEEEcCCcchHHHHHHhHHcCCceEEEEeC
Q psy13373 152 NASVLIVGCGGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 152 ~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
+.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~ 224 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDL 224 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence 579999999999999888888889988877653
No 471
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=86.06 E-value=0.78 Score=48.65 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=31.2
Q ss_pred HhhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeC
Q psy13373 149 KLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 149 kL~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
.|++++|.|||+|.+|..+++.|...|+. +..+|+
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~~-V~~~Dp 147 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGWK-VLVCDP 147 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCCE-EEEECC
Confidence 58899999999999999999999999985 666665
No 472
>PRK08264 short chain dehydrogenase; Validated
Probab=85.97 E-value=0.81 Score=44.28 Aligned_cols=36 Identities=28% Similarity=0.420 Sum_probs=31.3
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
+.+++|+|.|+ |++|.++++.|+..|..++.+++.+
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 56789999984 7899999999999999778888754
No 473
>PTZ00188 adrenodoxin reductase; Provisional
Probab=85.96 E-value=3.9 Score=44.78 Aligned_cols=96 Identities=15% Similarity=0.180 Sum_probs=57.3
Q ss_pred hcCcEEEEcCCcchHHHHHHhH-HcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhh--CCCcEEEEe
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLA-ASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAI--NRNTIVHAY 227 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La-~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~l--np~v~v~~~ 227 (525)
...+|+|||.|.-|.+.|..|+ ..|+ +++|+|....-- =+.|.- ..+++ ++.+.+.+.+.+. ++.+++..
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~pg-GLvR~G-VaPdh---~~~k~v~~~f~~~~~~~~v~f~g- 110 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPNPY-GLIRYG-VAPDH---IHVKNTYKTFDPVFLSPNYRFFG- 110 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCCCc-cEEEEe-CCCCC---ccHHHHHHHHHHHHhhCCeEEEe-
Confidence 4679999999999999999765 5565 499998765433 222321 12222 3344444444332 34554432
Q ss_pred eecCCc-chHhHhhccCCeEeecCCCH
Q psy13373 228 QTLLDT-SNACDIIRRYDVVVDACDNA 253 (525)
Q Consensus 228 ~~~i~~-~~~~~~~~~~dvVi~~~d~~ 253 (525)
+..+.. -...++...||.||.++...
T Consensus 111 nv~VG~Dvt~eeL~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 111 NVHVGVDLKMEELRNHYNCVIFCCGAS 137 (506)
T ss_pred eeEecCccCHHHHHhcCCEEEEEcCCC
Confidence 222222 23456667899999887754
No 474
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.95 E-value=0.81 Score=46.92 Aligned_cols=33 Identities=33% Similarity=0.400 Sum_probs=29.5
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
.+|.|||+|-+|+.+|.+|+..|. +++++|.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence 379999999999999999999997 699998764
No 475
>PRK06196 oxidoreductase; Provisional
Probab=85.92 E-value=2.8 Score=42.84 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=28.7
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
|++++|+|.|+ ||+|.++++.|+..|.. +.+++.+
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~~-Vv~~~R~ 59 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGAH-VIVPARR 59 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence 56788999986 67999999999999974 6666543
No 476
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=85.91 E-value=0.83 Score=48.49 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=30.5
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
++|+|||.|-+|..+|..|++.|. +++++|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 589999999999999999999996 699999876
No 477
>PRK13018 cell division protein FtsZ; Provisional
Probab=85.89 E-value=4.7 Score=42.72 Aligned_cols=37 Identities=30% Similarity=0.537 Sum_probs=32.6
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCc--eEEEEeCCc
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVG--TLGLADYDR 186 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg--~i~lvD~d~ 186 (525)
..+.+|.|||+||-|+.++.+|...|+. ++..++.|.
T Consensus 26 ~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~ 64 (378)
T PRK13018 26 FGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDA 64 (378)
T ss_pred cCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCH
Confidence 4567999999999999999999999986 567888877
No 478
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=85.87 E-value=1.9 Score=43.72 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=24.7
Q ss_pred cCcEEEEcCCcchHHHHHHhHHcCCce
Q psy13373 152 NASVLIVGCGGTGSPCIQYLAASGVGT 178 (525)
Q Consensus 152 ~~~VlViG~GglGs~ia~~La~~GVg~ 178 (525)
..+|+|+|+|.+|..++..|.+.|...
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v 29 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVV 29 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeE
Confidence 468999999999999999999999874
No 479
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=85.84 E-value=0.92 Score=46.26 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=31.6
Q ss_pred cEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccc
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVEL 189 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~ 189 (525)
.|+|||.|-+|..+|..|++.|. +++|+|.+.+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~~ 35 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIGS 35 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTTS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeeccccc
Confidence 48999999999999999999999 899999996543
No 480
>PRK08265 short chain dehydrogenase; Provisional
Probab=85.83 E-value=0.96 Score=44.74 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=30.5
Q ss_pred HhhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 149 KLLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 149 kL~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
.|++++++|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDID 39 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 467889999986 7899999999999998 67777654
No 481
>PRK12744 short chain dehydrogenase; Provisional
Probab=85.76 E-value=4.5 Score=39.68 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=27.0
Q ss_pred HhhcCcEEEEc-CCcchHHHHHHhHHcCCceEEE
Q psy13373 149 KLLNASVLIVG-CGGTGSPCIQYLAASGVGTLGL 181 (525)
Q Consensus 149 kL~~~~VlViG-~GglGs~ia~~La~~GVg~i~l 181 (525)
.|++++|+|.| .|++|.++++.|+..|...+.+
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i 38 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAI 38 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEE
Confidence 36678999998 5679999999999999874544
No 482
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=85.75 E-value=3.1 Score=39.80 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.0
Q ss_pred EEEEcCCc-chHHHHHHhHHcCCceEE
Q psy13373 155 VLIVGCGG-TGSPCIQYLAASGVGTLG 180 (525)
Q Consensus 155 VlViG~Gg-lGs~ia~~La~~GVg~i~ 180 (525)
|+|+|+.| +|+++++.|...|..-+.
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~ 27 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIV 27 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEE
T ss_pred EEEEccCCHHHHHHHHHHHHcCCcccc
Confidence 78998555 999999999999998443
No 483
>PRK12831 putative oxidoreductase; Provisional
Probab=85.75 E-value=4.1 Score=44.33 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=30.2
Q ss_pred hcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
...+|+|||.|..|...|..|++.|. +++|+|..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~-~V~v~e~~ 172 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGY-DVTIFEAL 172 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEecC
Confidence 56799999999999999999999997 58898853
No 484
>PRK06823 ornithine cyclodeaminase; Validated
Probab=85.74 E-value=3.6 Score=42.52 Aligned_cols=75 Identities=15% Similarity=0.222 Sum_probs=53.2
Q ss_pred cCcEEEEcCCcchHHHHHHhHHc-CCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeeec
Q psy13373 152 NASVLIVGCGGTGSPCIQYLAAS-GVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTL 230 (525)
Q Consensus 152 ~~~VlViG~GglGs~ia~~La~~-GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 230 (525)
.++++|+|+|..+-.-++.+... .+.+|.++|.. ..|++..++++++. ..++...
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~-------------------~~~a~~~~~~~~~~--~~~v~~~--- 183 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRS-------------------ETALEEYRQYAQAL--GFAVNTT--- 183 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCC-------------------HHHHHHHHHHHHhc--CCcEEEE---
Confidence 58999999999998888877743 67788876442 35677777777654 2334332
Q ss_pred CCcchHhHhhccCCeEeecCCCH
Q psy13373 231 LDTSNACDIIRRYDVVVDACDNA 253 (525)
Q Consensus 231 i~~~~~~~~~~~~dvVi~~~d~~ 253 (525)
++..+.+.++|+|+.||.+.
T Consensus 184 ---~~~~~av~~ADIV~taT~s~ 203 (315)
T PRK06823 184 ---LDAAEVAHAANLIVTTTPSR 203 (315)
T ss_pred ---CCHHHHhcCCCEEEEecCCC
Confidence 23567789999999987643
No 485
>PLN02572 UDP-sulfoquinovose synthase
Probab=85.74 E-value=2.6 Score=45.54 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=29.1
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
+++.+|+|.|+ |.+|+.+++.|+..|. +++++|..
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~~ 80 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDNL 80 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEecc
Confidence 55678999985 7799999999999996 58888753
No 486
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=85.72 E-value=1.6 Score=42.92 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=30.0
Q ss_pred HhhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 149 KLLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 149 kL~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
+|.+++|+|.|+ |++|.++++.|+..|.. +.++|.+.
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~~-v~~~~r~~ 40 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLAEGAR-VVIADIKP 40 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEcCCH
Confidence 366789999985 78999999999999974 77776543
No 487
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.69 E-value=2.2 Score=37.36 Aligned_cols=80 Identities=18% Similarity=0.154 Sum_probs=45.6
Q ss_pred cccChhhhHHHHHhcCCCcEEEecCChhhh-------------hcCCCCCeEEeChhh--HHHHHhhcCCchHH-HHhhh
Q psy13373 400 EHLTALDYRDEFLARRVAHTLLDVRSVDEF-------------AMMSLNIASHATMAD--VQLMFAEAGECPAF-LESLR 463 (525)
Q Consensus 400 ~~is~~el~~~~l~~~~~~~lIDVR~~~E~-------------~~ghIpGAinip~~~--l~~~~~~~~~~~~~-l~~l~ 463 (525)
.+++++++.+. -+.+ =..||--|+-.|= ....++ -.+||... +... .++. ...+.
T Consensus 14 gQi~~~D~~~i-aa~G-FksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~-y~~iPV~~~~iT~~------dV~~f~~Al~ 84 (130)
T COG3453 14 GQISPADIASI-AALG-FKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT-YTHIPVTGGGITEA------DVEAFQRALD 84 (130)
T ss_pred CCCCHHHHHHH-HHhc-cceecccCCCCCCCCCCChHHHHHHHHhcCCc-eEEeecCCCCCCHH------HHHHHHHHHH
Confidence 46788888876 5544 2357888876552 112222 34666532 2111 0111 22222
Q ss_pred hhcCCCCeEEEEcCcChHHHHHHHHHHH
Q psy13373 464 EDILAHRHVFVICRRGNDSQKVVQLLKR 491 (525)
Q Consensus 464 ~~~~~~~~Ivv~C~~G~rS~~aa~~L~~ 491 (525)
..+.||+.||++|.||...+..-..
T Consensus 85 ---eaegPVlayCrsGtRs~~ly~~~~~ 109 (130)
T COG3453 85 ---EAEGPVLAYCRSGTRSLNLYGLGEL 109 (130)
T ss_pred ---HhCCCEEeeecCCchHHHHHHHHHH
Confidence 2477999999999999877665543
No 488
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=85.65 E-value=0.8 Score=41.96 Aligned_cols=104 Identities=16% Similarity=0.117 Sum_probs=54.1
Q ss_pred cEEEEcCCcchHHHHHHhHH-cCCceEEEEeCCcccccCCCcccccC-CCCCCCcHHHHHHHH-HHhhCCCcEEEEeeec
Q psy13373 154 SVLIVGCGGTGSPCIQYLAA-SGVGTLGLADYDRVELSNLHRQVIHT-THTIGQPKVTSAKRF-ISAINRNTIVHAYQTL 230 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~-~GVg~i~lvD~d~V~~sNL~Rq~l~~-~~diG~~Ka~~~~~~-l~~lnp~v~v~~~~~~ 230 (525)
+|.|+|+|.+|..+++.+.. .++.-+.+.|. .++..+.. ++. .+--|+.+.++..+. -..+| +..+......
T Consensus 2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~--~~~~~~a~--ll~~Ds~hg~~~~~v~~~~~~l~i~-g~~i~~~~~~ 76 (149)
T smart00846 2 KVGINGFGRIGRLVLRALLERPDIEVVAINDL--TDPETLAH--LLKYDSVHGRFPGEVEVDEDGLIVN-GKKIKVLAER 76 (149)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEeecC--CCHHHHHH--HhcccCCCCCCCCcEEEeCCEEEEC-CEEEEEEecC
Confidence 79999999999999999884 46665666653 34444433 223 233466543321000 00000 1122221111
Q ss_pred CCcchHhHhhccCCeEeecCCCHHHHHHHHHHh
Q psy13373 231 LDTSNACDIIRRYDVVVDACDNAPTRYLLNDAC 263 (525)
Q Consensus 231 i~~~~~~~~~~~~dvVi~~~d~~~~r~~l~~~~ 263 (525)
.+.+..--..+.|+||+|+..+..+.....+.
T Consensus 77 -~p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl 108 (149)
T smart00846 77 -DPANLPWKELGVDIVVECTGKFTTREKASAHL 108 (149)
T ss_pred -ChHHCcccccCCeEEEeccccccchHHHHHHH
Confidence 11111101136799999998887766554444
No 489
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=85.60 E-value=3.7 Score=40.52 Aligned_cols=115 Identities=13% Similarity=0.219 Sum_probs=70.6
Q ss_pred cEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcE-EEEeeec-C
Q psy13373 154 SVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTI-VHAYQTL-L 231 (525)
Q Consensus 154 ~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~-v~~~~~~-i 231 (525)
++.+||+|-.|..++++|...|.. +..+|-+.-....+.. -|-.-+..+.+.+.++.+--. ..-.+.. +
T Consensus 2 ~iGmiGLGrMG~n~v~rl~~~ghd-vV~yD~n~~av~~~~~--------~ga~~a~sl~el~~~L~~pr~vWlMvPag~i 72 (300)
T COG1023 2 QIGMIGLGRMGANLVRRLLDGGHD-VVGYDVNQTAVEELKD--------EGATGAASLDELVAKLSAPRIVWLMVPAGDI 72 (300)
T ss_pred cceeeccchhhHHHHHHHHhCCCe-EEEEcCCHHHHHHHHh--------cCCccccCHHHHHHhcCCCcEEEEEccCCCc
Confidence 578999999999999999998864 5566654433222222 122224445666666654322 2223322 4
Q ss_pred Ccc---hHhHhhccCCeEeecCCCH-HHHHHHHHHhHhcCCcEEEecccC
Q psy13373 232 DTS---NACDIIRRYDVVVDACDNA-PTRYLLNDACLREGRPLVSASALG 277 (525)
Q Consensus 232 ~~~---~~~~~~~~~dvVi~~~d~~-~~r~~l~~~~~~~~~p~i~~~~~g 277 (525)
++. +...+++.=|+|||...+. .....-.+...++++-|+++++.|
T Consensus 73 t~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSG 122 (300)
T COG1023 73 TDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSG 122 (300)
T ss_pred hHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCC
Confidence 443 2345577889999976553 222223344678999999998876
No 490
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=85.60 E-value=1.5 Score=44.82 Aligned_cols=76 Identities=22% Similarity=0.316 Sum_probs=52.1
Q ss_pred hhcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEeee
Q psy13373 150 LLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQT 229 (525)
Q Consensus 150 L~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~ 229 (525)
...++|+|+|-|-+|.+.||..+.+|.. ++|+|...=..+.|.- ++ .-++.+ .
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~-Vtild~n~~rl~~ldd-----------------------~f-~~rv~~--~ 218 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGAD-VTILDLNIDRLRQLDD-----------------------LF-GGRVHT--L 218 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCe-eEEEecCHHHHhhhhH-----------------------hh-CceeEE--E
Confidence 5678999999999999999999998864 8887764322222221 11 122332 3
Q ss_pred cCCcchHhHhhccCCeEeecCCC
Q psy13373 230 LLDTSNACDIIRRYDVVVDACDN 252 (525)
Q Consensus 230 ~i~~~~~~~~~~~~dvVi~~~d~ 252 (525)
..+..+..+.+..+|+||.+.--
T Consensus 219 ~st~~~iee~v~~aDlvIgaVLI 241 (371)
T COG0686 219 YSTPSNIEEAVKKADLVIGAVLI 241 (371)
T ss_pred EcCHHHHHHHhhhccEEEEEEEe
Confidence 34566788889999999976543
No 491
>PRK12937 short chain dehydrogenase; Provisional
Probab=85.60 E-value=3.4 Score=39.89 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=25.5
Q ss_pred hhcCcEEEEcC-CcchHHHHHHhHHcCCceE
Q psy13373 150 LLNASVLIVGC-GGTGSPCIQYLAASGVGTL 179 (525)
Q Consensus 150 L~~~~VlViG~-GglGs~ia~~La~~GVg~i 179 (525)
+++++|+|.|+ |++|..+++.|+..|..-+
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~ 33 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVA 33 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEE
Confidence 46789999985 7899999999999998533
No 492
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=85.58 E-value=1 Score=51.97 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=29.3
Q ss_pred CcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCc
Q psy13373 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186 (525)
Q Consensus 153 ~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~ 186 (525)
++|.|||+|..|+.||..++.+|+ .++|+|.+.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~ 368 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATP 368 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCH
Confidence 579999999999999999999997 588888664
No 493
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=85.56 E-value=6.6 Score=40.75 Aligned_cols=97 Identities=22% Similarity=0.268 Sum_probs=60.4
Q ss_pred hcCcEEEEcCCcchHHHHHHhHHcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHH-HHHHHHHhhCCCcEEEEeee
Q psy13373 151 LNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVT-SAKRFISAINRNTIVHAYQT 229 (525)
Q Consensus 151 ~~~~VlViG~GglGs~ia~~La~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~-~~~~~l~~lnp~v~v~~~~~ 229 (525)
...+|.|+|+||+|-++..-+..+|.+.|.-+|... +.-.+.++|..+ |.=-+|-. -+.+.
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~-~Kl~~A~~fGAT--~~vn~~~~~~vv~~--------------- 246 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINP-EKLELAKKFGAT--HFVNPKEVDDVVEA--------------- 246 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCH-HHHHHHHhcCCc--eeecchhhhhHHHH---------------
Confidence 467999999999999999999999999999998643 111122222110 00000000 01111
Q ss_pred cCCcchHhHhhc-cCCeEeecCCCHHHHHHHHHHhHhcCCcEE
Q psy13373 230 LLDTSNACDIIR-RYDVVVDACDNAPTRYLLNDACLREGRPLV 271 (525)
Q Consensus 230 ~i~~~~~~~~~~-~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i 271 (525)
..++-. ..|.+|+|+.+...-..--+.|++.|.-++
T Consensus 247 ------i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~ 283 (366)
T COG1062 247 ------IVELTDGGADYAFECVGNVEVMRQALEATHRGGTSVI 283 (366)
T ss_pred ------HHHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEE
Confidence 223333 789999999999876666667777665443
No 494
>PRK05855 short chain dehydrogenase; Validated
Probab=85.45 E-value=2.7 Score=46.27 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=31.6
Q ss_pred HHHHhhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 146 GQEKLLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 146 ~q~kL~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
.+..+++.+++|+|+ ||+|.++++.|+..|.. +.+++.
T Consensus 309 ~~~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~r 347 (582)
T PRK05855 309 PRGPFSGKLVVVTGAGSGIGRETALAFAREGAE-VVASDI 347 (582)
T ss_pred ccccCCCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 456788899999985 78999999999999986 776653
No 495
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=85.44 E-value=8.7 Score=39.30 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=24.1
Q ss_pred cEEEEcC-CcchHHHHHHhHHcCC-ceEEEEe
Q psy13373 154 SVLIVGC-GGTGSPCIQYLAASGV-GTLGLAD 183 (525)
Q Consensus 154 ~VlViG~-GglGs~ia~~La~~GV-g~i~lvD 183 (525)
+|+|.|+ |.+|+.+++.|+..|- .++.++.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~ 32 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLV 32 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence 5899996 7799999999999984 3566653
No 496
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=85.44 E-value=3.4 Score=41.75 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=26.6
Q ss_pred EEEEcC-CcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 155 VLIVGC-GGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 155 VlViG~-GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
|+|.|+ |-+|+++++.|+..|...+.++|..
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~ 33 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNL 33 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCC
Confidence 788885 6799999999999998888888764
No 497
>PLN02650 dihydroflavonol-4-reductase
Probab=85.42 E-value=9.3 Score=39.53 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=25.6
Q ss_pred cCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeC
Q psy13373 152 NASVLIVGC-GGTGSPCIQYLAASGVGTLGLADY 184 (525)
Q Consensus 152 ~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~ 184 (525)
+++|+|.|+ |.+|+.+++.|+..|.. +++++.
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~~-V~~~~r 37 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGYT-VRATVR 37 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCCE-EEEEEc
Confidence 568999996 66999999999999874 555543
No 498
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=85.37 E-value=5.4 Score=43.01 Aligned_cols=106 Identities=20% Similarity=0.241 Sum_probs=69.6
Q ss_pred cEEEEcCCcch-HHHHHHhH----HcCCceEEEEeCCcccccCCCcccccCCCCCCCcHHHHHHHHHHhhCCCcEEEEee
Q psy13373 154 SVLIVGCGGTG-SPCIQYLA----ASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQ 228 (525)
Q Consensus 154 ~VlViG~GglG-s~ia~~La----~~GVg~i~lvD~d~V~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 228 (525)
||+|||.|+.= -.+.+.|+ ...+++|.|+|-|. ..+.. =...+++.+++..+.++++...
T Consensus 2 KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~---~Rl~~------------v~~l~~~~~~~~g~~~~v~~tt 66 (425)
T cd05197 2 KIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDE---ERLDI------------ILTIAKRYVEEVGADIKFEKTM 66 (425)
T ss_pred EEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCH---HHHHH------------HHHHHHHHHHhhCCCeEEEEeC
Confidence 79999999853 36666776 34578999999764 11111 0345566667777777776543
Q ss_pred ecCCcchHhHhhccCCeEeecCCC--HHHHHHHHHHhHhcCCcEEEecccCccceE
Q psy13373 229 TLLDTSNACDIIRRYDVVVDACDN--APTRYLLNDACLREGRPLVSASALGLEGQL 282 (525)
Q Consensus 229 ~~i~~~~~~~~~~~~dvVi~~~d~--~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v 282 (525)
. ..+.++++|+||.+.-- .+.|..-.+++.++|+ +-..+.|..|..
T Consensus 67 D------~~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~--~gqeT~G~GG~~ 114 (425)
T cd05197 67 D------LEDAIIDADFVINQFRVGGLTYREKDEQIPLKYGV--IGQETVGPGGTF 114 (425)
T ss_pred C------HHHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCc--ccccccCcchhh
Confidence 2 46788999999976443 3455555567788876 336677766644
No 499
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=85.34 E-value=6.5 Score=41.07 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=28.2
Q ss_pred hHhhccCCeEeecCCCHHHHHHHHHHhHhcCCcEEEecc
Q psy13373 237 CDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASA 275 (525)
Q Consensus 237 ~~~~~~~dvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~ 275 (525)
.+++.++|+||+|+.....+. ....+.+.|+++|+.+.
T Consensus 73 ~el~~~vDVVIdaT~~~~~~e-~a~~~~~aGk~VI~~~~ 110 (341)
T PRK04207 73 EDLLEKADIVVDATPGGVGAK-NKELYEKAGVKAIFQGG 110 (341)
T ss_pred hHhhccCCEEEECCCchhhHH-HHHHHHHCCCEEEEcCC
Confidence 455678999999998765554 44567788899888754
No 500
>PRK06198 short chain dehydrogenase; Provisional
Probab=85.34 E-value=1.6 Score=42.89 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=31.8
Q ss_pred HhhcCcEEEEcC-CcchHHHHHHhHHcCCceEEEEeCC
Q psy13373 149 KLLNASVLIVGC-GGTGSPCIQYLAASGVGTLGLADYD 185 (525)
Q Consensus 149 kL~~~~VlViG~-GglGs~ia~~La~~GVg~i~lvD~d 185 (525)
.|++++|+|+|+ |++|..+++.|+..|..++.+++.+
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~ 40 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN 40 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence 477889999985 6799999999999999878887664
Done!