RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13373
(525 letters)
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann
fold, (2) Cys-X-X-Cys zinc-binding M MOAD:
ubiquitin-like fold; 1.70A {Escherichia coli} SCOP:
c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Length = 249
Score = 377 bits (970), Expect = e-130
Identities = 104/251 (41%), Positives = 147/251 (58%), Gaps = 7/251 (2%)
Query: 123 SKFSKDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLA 182
++ S RY+RQI+L GQE L ++ VLIVG GG G QYLA++GVG L L
Sbjct: 2 AELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLL 61
Query: 183 DYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRR 242
D+D V LSNL RQ +H+ T+GQPKV SA+ ++ IN + + LLD + +I
Sbjct: 62 DFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIAE 121
Query: 243 YDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCVYNYK-GGPCYRCIYPVPP 301
+D+V+D DN R LN C PLVS +A+ +EGQ+ V+ Y+ G PCYRC+ +
Sbjct: 122 HDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGEPCYRCLSRLFG 181
Query: 302 PAETVGTCGDNGVLGPVPGVMGTLQAVETIKLLIGL--PVMDKLLVYDAELSKFLSVKLR 359
TC + GV+ P+ GV+G+LQA+E IK+L G P K+++YDA +F +KL
Sbjct: 182 EN--ALTCVEAGVMAPLIGVIGSLQAMEAIKMLAGYGKPASGKIVMYDAMTCQFREMKLM 239
Query: 360 KKKEDC-VCAH 369
+ C VC
Sbjct: 240 RNP-GCEVCGQ 249
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein
complex, THIF, TRAN biosynthetic protein complex; 1.98A
{Escherichia coli} PDB: 1zfn_A* 1zkm_A
Length = 251
Score = 376 bits (967), Expect = e-129
Identities = 110/252 (43%), Positives = 150/252 (59%), Gaps = 7/252 (2%)
Query: 126 SKDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185
+ RYSRQILLD + + GQ+KLL++ VLI+G GG G+P YLA +GVGTL LAD D
Sbjct: 2 NDRDFMRYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD 61
Query: 186 RVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDV 245
V LSNL RQ++ TT I +PK +++ ++ +N + + A Q L D + R DV
Sbjct: 62 DVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVARADV 121
Query: 246 VVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCVYNYK-GGPCYRCIYPVPPPAE 304
V+D DN TR +N AC+ PL++ASA+G GQL V CYRC++P E
Sbjct: 122 VLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTPPWEQGCYRCLWPDNQEPE 181
Query: 305 TVGTCGDNGVLGPVPGVMGTLQAVETIKLLIGLPVM-DKLLVYDAELSKFLSVKLRKKKE 363
C GV+GPV GVMGTLQA+E IKLL G+ +L ++D + S++ S+ LR+
Sbjct: 182 R--NCRTAGVVGPVVGVMGTLQALEAIKLLSGIETPAGELRLFDGKSSQWRSLALRRAS- 238
Query: 364 DC-VCA-HPADT 373
C VC AD
Sbjct: 239 GCPVCGGSNADP 250
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein
structure, MCCC7, peptide antibiotics, N-P bond
formation, transferase; HET: ATP; 1.90A {Escherichia
coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Length = 353
Score = 349 bits (897), Expect = e-117
Identities = 65/265 (24%), Positives = 106/265 (40%), Gaps = 22/265 (8%)
Query: 126 SKDITERYSRQILLDQV----GVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGL 181
+ RYSR L Q V+ Q+KL NA V+I+GCGG G+ LA SG+G + L
Sbjct: 88 NSTENNRYSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIIL 147
Query: 182 ADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIR 241
D D++E +NL RQV+ + +G+ K KR + N V ++ +
Sbjct: 148 IDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALNINDYTDLHKVP 207
Query: 242 RYDVVVDACDNA-PTRYLLNDACLREGRPLVSASALGLEGQLCVYNYKG-GPCYRCIYPV 299
D+ V + D+ +N C+R +P ++A + G CY C V
Sbjct: 208 EADIWVVSADHPFNLINWVNKYCVRANQPYINAGYVNDIAVFGPLYVPGKTGCYECQKVV 267
Query: 300 PPP-----------AETVGTCGDNGVLGPVPGVMGTLQAVETIKLLIGLP---VMDKLLV 345
+ + + PV V L A + IK + ++K +
Sbjct: 268 ADLYGSEKENIDHKIKLINSRFKPATFAPVNNVAAALCAADVIKFIGKYSEPLSLNKRIG 327
Query: 346 YDAELSKFLSVKLRKKKEDC-VCAH 369
++ K S + + C VC +
Sbjct: 328 IWSDEIKIHSQNMGRSP-VCSVCGN 351
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold,
ATP-binding, UBL conjugation pathway, transfer
structural genomics consortium, SGC; HET: ATP; 2.00A
{Homo sapiens} PDB: 3guc_A*
Length = 292
Score = 331 bits (850), Expect = e-111
Identities = 64/282 (22%), Positives = 112/282 (39%), Gaps = 27/282 (9%)
Query: 131 ERYSRQILLDQVG-VMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVEL 189
+ L ++G V EK+ +V IVG GG GS + L G+G L L DYD+VEL
Sbjct: 14 LVPRGSMALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVEL 73
Query: 190 SNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDT------------SNAC 237
+N++R H G KV +A+ + IN + + + + T +
Sbjct: 74 ANMNRL-FFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGL 132
Query: 238 DIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASAL--GLEGQLCVYNYKGGPCYRC 295
+ + D+V+ DN R +N AC G+ + + + G + + C+ C
Sbjct: 133 EEGKPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESACFAC 192
Query: 296 IYPVPPPAET-VGTCGDNGV----LGPVPGVMGTLQAVETIKLLIGLPVMDKLLVYDAEL 350
P+ A T GV L GV+ + +K L+ + L Y+A
Sbjct: 193 APPLVVAANIDEKTLKREGVCAASLPTTMGVVAGILVQNVLKFLLNFGTVSFYLGYNAMQ 252
Query: 351 SKFLSVKLRKKKE--DCVCAHPADTQLVDYEVFCSSRANDKT 390
F ++ ++ + D C Q +Y+ ++ +
Sbjct: 253 DFFPTMSMKPNPQCDDRNCR----KQQEEYKKKVAALPKQEV 290
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome
formation, non-canonical E1, ATP BI UBL, ATG8, ATG12,
ATG10, ATG3, UBL activation, thiolation; 1.91A
{Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Length = 340
Score = 313 bits (805), Expect = e-103
Identities = 65/344 (18%), Positives = 109/344 (31%), Gaps = 47/344 (13%)
Query: 123 SKFSKDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLA 182
+ S D+ + + +L + + + N VL++G G G + L A GV +
Sbjct: 8 ADQSVDLNLKLMKWRILPDLN---LDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFV 64
Query: 183 DYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAY--------------- 227
D V SN RQ ++ G+PK A + I
Sbjct: 65 DNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEE 124
Query: 228 QTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCVYNY 287
D +I+ +D++ D+ +R+L + E + +++A ALG + L + +
Sbjct: 125 AQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINA-ALGFDSYLVMRHG 183
Query: 288 -------KGGPCYRCIYPVPPPAETVG--TCGDNGVLGPVPGVMGTLQAVETIKLLIG-- 336
K CY C V P + V P +M + AVE + L+
Sbjct: 184 NRDEQSSKQLGCYFCHDVVAPTDSLTDRTLDQMSTVTRPGVAMMASSLAVELMTSLLQTK 243
Query: 337 ------LPVMDKLLVYDAELSKFLSVKLR-KKKEDC-VCAHPADTQLVDYEV-FCSSRAN 387
+ D L F +KL E C C+ D F
Sbjct: 244 YSGSETTVLGDIPHQIRGFLHNFSILKLETPAYEHCPACSPKVIEAFTDLGWEFVKKALE 303
Query: 388 DKTPDISILDPTEHLTALD-YRDEFLARRVAHTLLDVRSVDEFA 430
E ++ L + E + DE A
Sbjct: 304 HP-------LYLEEISGLSVIKQEVERLGNDVFEWEDDESDEIA 340
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc
binding, metal binding protein; 3.00A {Saccharomyces
cerevisiae} PDB: 3vh2_A
Length = 598
Score = 299 bits (766), Expect = 1e-94
Identities = 57/279 (20%), Positives = 97/279 (34%), Gaps = 38/279 (13%)
Query: 123 SKFSKDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLA 182
+ S D+ + + +L + + + N VL++G G G + L A GV +
Sbjct: 301 ADQSVDLNLKLMKWRILPDLN---LDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFV 357
Query: 183 DYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQ-------------- 228
D V SN RQ ++ G+PK A + I +
Sbjct: 358 DNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEE 417
Query: 229 -TLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCVYNY 287
D +I+ +D++ D+ +R+L + E + +++A ALG + L + +
Sbjct: 418 AQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINA-ALGFDSYLVMRHG 476
Query: 288 -------KGGPCYRCIYPVPPPAETVGT--CGDNGVLGPVPGVMGTLQAVETIKLL--IG 336
K CY C V P V P +M + AVE + L
Sbjct: 477 NRDEQSSKQLGCYFCHDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTK 536
Query: 337 LPVMDKLLVYD------AELSKFLSVKLRKKK-EDC-VC 367
+ ++ D L F +KL E C C
Sbjct: 537 YSGSETTVLGDIPHQIRGFLHNFSILKLETPAYEHCPAC 575
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B
3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Length = 434
Score = 201 bits (513), Expect = 2e-59
Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 13/176 (7%)
Query: 146 GQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQ 205
Q L VL++G GG G ++ LA SG + + D D +++SNL+RQ + IG+
Sbjct: 34 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGR 93
Query: 206 PKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLR 265
PK A F++ N V + + N R++ ++V D+ R +N +
Sbjct: 94 PKAEVAAEFLNDRVPNCNVVPHFNKIQDFND-TFYRQFHIIVCGLDSIIARRWINGMLIS 152
Query: 266 ------------EGRPLVSASALGLEGQLCVYNYKGGPCYRCIYPVPPPAETVGTC 309
PL+ G +G V C C + PP C
Sbjct: 153 LLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMC 208
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 202 bits (514), Expect = 9e-58
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 3/173 (1%)
Query: 138 LLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVI 197
L + E + VL+VG GG G ++ L +G + L D D +++SNL+RQ +
Sbjct: 3 LSRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFL 62
Query: 198 HTTHTIGQPKVTSAKRFISAINRNTIVHAYQ-TLLDTSNACDIIRRYDVVVDACDNAPTR 256
+G+ K AK + + AY ++++ + R++ +V++A DN R
Sbjct: 63 FQKKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAAR 122
Query: 257 YLLNDACLREGRPLVSASALGLEGQLCVYNYKGGPCYRCIYPVPPPAETVGTC 309
+N CL PL+ + G GQ+ CY C P T
Sbjct: 123 NHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYEC--HPKPTQRTFPGA 173
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL,
ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A*
3kyc_A* 3kyd_A*
Length = 346
Score = 190 bits (485), Expect = 3e-56
Identities = 32/160 (20%), Positives = 65/160 (40%), Gaps = 3/160 (1%)
Query: 126 SKDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYD 185
S++ +Y RQI L G+ Q++L + VL+VG G G+ + L +GV L + D++
Sbjct: 12 SEEEAAQYDRQIRL--WGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHE 69
Query: 186 RVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDV 245
+V + Q + T ++G+ + ++ +N V ++ ++D
Sbjct: 70 QVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIE-KKPESFFTQFDA 128
Query: 246 VVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCVY 285
V C + ++ C + + G G
Sbjct: 129 VCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYTFAN 168
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase,
conformationa thioester, adenylation,
transthioesterification, ATP-bindin nucleotide-binding;
2.70A {Saccharomyces cerevisiae}
Length = 1015
Score = 140 bits (354), Expect = 2e-35
Identities = 42/204 (20%), Positives = 81/204 (39%), Gaps = 8/204 (3%)
Query: 131 ERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELS 190
YSRQ+ + +G K+ ++VLI+G G G + + +GV ++ + D + V+L+
Sbjct: 8 SLYSRQLYV--LGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLA 65
Query: 191 NLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVV-DA 249
+L Q T IGQ + + ++ +N V+ +L D + ++ VVV
Sbjct: 66 DLSTQFFLTEKDIGQKRGDVTRAKLAELNAYVPVNVLDSLDDV----TQLSQFQVVVATD 121
Query: 250 CDNAPTRYLLNDACLREGRPLVSASALGLEGQLCVYNYKGGPCYRCIYPVPPPAETVGTC 309
+ + +N+ C G +S+ GL G V P V
Sbjct: 122 TVSLEDKVKINEFCHSSGIRFISSETRGLFGNTFVDLGDEFTVLDPT-GEEPRTGMVSDI 180
Query: 310 GDNGVLGPVPGVMGTLQAVETIKL 333
+G + + L+ ++
Sbjct: 181 EPDGTVTMLDDNRHGLEDGNFVRF 204
Score = 118 bits (297), Expect = 2e-28
Identities = 46/205 (22%), Positives = 81/205 (39%), Gaps = 13/205 (6%)
Query: 115 CVWYGEVYSKFSKDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAAS 174
K ++ + RY QI + G+ Q+K+ N+ V +VG G G ++ A
Sbjct: 390 DPKNFPRNEKTTQPVNSRYDNQIAVF--GLDFQKKIANSKVFLVGSGAIGCEMLKNWALL 447
Query: 175 GVGT-----LGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQT 229
G+G+ + + D D +E SNL+RQ + +G+ K A + A+N +
Sbjct: 448 GLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVGKNKSEVAAEAVCAMNPDLKGKINAK 507
Query: 230 LLDTSNAC------DIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLC 283
+ D V +A DN R ++ C+ +PL+ + LG +G
Sbjct: 508 IDKVGPETEEIFNDSFWESLDFVTNALDNVDARTYVDRRCVFYRKPLLESGTLGTKGNTQ 567
Query: 284 VYNYKGGPCYRCIYPVPPPAETVGT 308
V + Y P + + T
Sbjct: 568 VIIPRLTESYSSSRDPPEKSIPLCT 592
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A
3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Length = 531
Score = 134 bits (338), Expect = 4e-34
Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 4/177 (2%)
Query: 131 ERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELS 190
++Y RQ+ L G GQE L +A V ++ TG+ ++ L G+G+ + D ++V
Sbjct: 13 QKYDRQLRL--WGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGE 70
Query: 191 NLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDT--SNACDIIRRYDVVVD 248
+ +IG+ + +A F+ +N + + + N R+ VVV
Sbjct: 71 DAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVA 130
Query: 249 ACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCVYNYKGGPCYRCIYPVPPPAET 305
T L D PL+ GL G + + +
Sbjct: 131 TQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRL 187
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic
subunit chimera; multifunction macromolecular complex,
ubiquitin, ATP, conformational change, thioester,
switch, adenylation, protein turnover, ligase; HET: ATP;
2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Length = 805
Score = 92.3 bits (229), Expect = 8e-20
Identities = 43/175 (24%), Positives = 69/175 (39%), Gaps = 13/175 (7%)
Query: 147 QEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQP 206
Q L VL++G GG G ++ LA SG + + D D +++SNL+RQ + IG+P
Sbjct: 406 QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRP 465
Query: 207 KVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLRE 266
K A F++ N V + + N R++ ++V D+ R +N +
Sbjct: 466 KAEVAAEFLNDRVPNCNVVPHFNKIQDFND-TFYRQFHIIVCGLDSIIARRWINGMLISL 524
Query: 267 GR------------PLVSASALGLEGQLCVYNYKGGPCYRCIYPVPPPAETVGTC 309
PL+ G +G V C C + PP C
Sbjct: 525 LNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMC 579
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4,
structural genomics, ubiquitin biology, structural
genomics consortium, SGC; 1.25A {Homo sapiens}
Length = 127
Score = 77.9 bits (192), Expect = 2e-17
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 5/127 (3%)
Query: 402 LTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGEC---PAF 458
++ DY+ L H LLDVR E + L A H + ++ AE+ + +
Sbjct: 3 VSVTDYK-RLLDSGAFHLLLDVRPQVEVDICRLPHALHIPLKHLERRDAESLKLLKEAIW 61
Query: 459 LESLREDILAHRHVFVICRRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKYV 518
E A ++VIC+ GNDSQK V++L+ + + +R++ G W +
Sbjct: 62 EEKQGTQEGAAVPIYVICKLGNDSQKAVKILQS-LSAAQELDPLTVRDVVGGLMAWAAKI 120
Query: 519 DNRIPTY 525
D P Y
Sbjct: 121 DGTFPQY 127
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.3 bits (158), Expect = 3e-11
Identities = 82/660 (12%), Positives = 182/660 (27%), Gaps = 242/660 (36%)
Query: 1 MDTEEAVRKVAQLKEKIRQLKEDLTNAETELETILEDRAFKSRPTDGASVRDDTIRRDVS 60
MD E + + + + + + +++ K D + +S
Sbjct: 7 MDFE-----TGEHQYQYKDILSVF------EDAFVDNFDCKDVQ--------DMPKSILS 47
Query: 61 NERDTNGAGQRGAHSTDSQVGDPASPEEIHREPNNVNQT-----TESDNPNGPVK--VED 113
E ++ + I + V+ T T V+ VE+
Sbjct: 48 KE----------------EI------DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85
Query: 114 ----DCVWYGEVYSKFSKD---ITERY-------------------SRQILLDQVGVMGQ 147
+ + + +T Y SR ++ +
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL----R 141
Query: 148 EKLLNAS----VLIVGCGGTGSPCIQYLAAS-------------GVGTLGLADYDRVE-- 188
+ LL VLI G G+G +A + L L + + E
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTW---VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 189 ---LSNLHRQVIHTT-----HTIGQPKVTSA-----KRFISA------------INRNTI 223
L L Q+ H+ + +R + + +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 224 VHAY----QTLLDTSNAC--DII---RRYDVVVD-------------------------- 248
+A+ + LL T D + + +D
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 249 ---ACDNAPTRYLLNDACLREGR------------PLVSASALGLEGQLCVYNYKGGPCY 293
P R + +R+G L + L L Y+ +
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN-VLEPAEYR--KMF 375
Query: 294 R--CIYP--VPPPAETVGTCGDNGVLGPVPGVMGTLQAVETIKLLIGLPVMDKLLVYDAE 349
++P P + + + V V+ L L+ P + +
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH---KYSLVEKQPKESTISIPS-- 430
Query: 350 LSKFLSVKLRKKKEDCVCAHPADTQLVD-YEVFCSSRANDKTPD-------------ISI 395
+ ++L+ K E+ H +VD Y + + ++D P +
Sbjct: 431 ----IYLELKVKLENEYALH---RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 396 LDPTEHLTA-----LDYRDEFLARRVAH-------------TLLDVRSVDEFAMMSLNIA 437
++ E +T LD+R FL +++ H TL ++ + + N
Sbjct: 484 IEHPERMTLFRMVFLDFR--FLEQKIRHDSTAWNASGSILNTLQQLKFYKPY--ICDNDP 539
Query: 438 SHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRRG--NDSQKVVQLLKRYVER 495
+ + + ++ FL + E+++ ++ ++ R + + + + + V+R
Sbjct: 540 KYERLVN-AIL--------DFLPKIEENLICSKYTDLL-RIALMAEDEAIFEEAHKQVQR 589
Score = 47.9 bits (113), Expect = 8e-06
Identities = 44/389 (11%), Positives = 94/389 (24%), Gaps = 123/389 (31%)
Query: 181 LADYDRVELSNLHRQVIHTT---HTIGQPKVTSAKRFISAINRNTIVHAYQTLLDTSNAC 237
+ ++D ++ ++ + ++ H I S + + Q ++
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 238 DIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCVYNYKGGPCYRCIY 297
+ Y ++ P + + Y + Y
Sbjct: 90 N----YKFLMS-----PIKTEQRQPSMMTRM----------------YIEQRDRLYNDNQ 124
Query: 298 PVPP--------------------PAETVGTCGDNG----VLGPVPGVMGTLQAVETIKL 333
PA+ V G G + L + K+
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--------ALDVCLSYKV 176
Query: 334 LIGLPVMDKLLVYDAELSKFLSVKLRKKKED--------CVCAHPADTQLVDYEVFCSSR 385
+ K ++ +L++K E P T D+ R
Sbjct: 177 QCKMD--FK--IF------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 386 ANDKTPDIS-------------ILD---PTEHLTALDYRDEFLARRVAHTLLDVRSVDEF 429
+ ++ +L + A + LL R
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS--------CKILLTTRFKQVT 278
Query: 430 AMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRRGNDSQKVVQLL 489
+S +H ++ + E +L ++ CR Q L
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPD-------EVK--SLLLK---YLDCR--------PQDL 318
Query: 490 KRYVERHRPGVVYDI-RNIKEGYKGWQKY 517
R V P + I +I++G W +
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNW 347
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.40A {Thermoplasma volcanium GSS1}
Length = 108
Score = 55.3 bits (134), Expect = 7e-10
Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 22/117 (18%)
Query: 409 DEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILA 468
+ A+T+LDVR E S+ + + + E + L D
Sbjct: 9 ADLYENIKAYTVLDVREPFELIFGSIANSINIPI----------SELREKWKILERD--- 55
Query: 469 HRHVFVICRRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKYVDNRIPTY 525
+ VIC GN S V+ L + G +I +++ G + W + + +
Sbjct: 56 -KKYAVICAHGNRSAAAVEFLSQL------G--LNIVDVEGGIQSWIEEGYPVVLEH 103
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 1e-09
Identities = 72/452 (15%), Positives = 127/452 (28%), Gaps = 138/452 (30%)
Query: 151 LNASVLIVGCGGTGSPCIQYLAAS----------GVGTLGLADYDR----VELSNLHRQV 196
L +L+ P + AS T G A D EL + + +
Sbjct: 16 LEHVLLV--------PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL--VGKFL 65
Query: 197 IHTTHTIGQPKVTSA--------KRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVD 248
+ + + KV F + +HA L N +++ +++
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI-- 123
Query: 249 ACDNAPTRYLLNDACLREGRPL--VSASAL---GLEGQLCVYNYKGG----PCY----RC 295
Y+ A + RP S SAL EG + GG Y R
Sbjct: 124 ------KNYI--TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 296 IYPVPPP--AETVGTCGDNGVLGPVPGVMGTLQAVETIKLLIGLPVMDKLLVYDAELSKF 353
+Y + + + TL +L+ +K+ + ++
Sbjct: 176 LYQTYHVLVGDLIKFSAE------------TLS-----ELIRTTLDAEKVFTQGLNILEW 218
Query: 354 LSVKLRKKKEDCVCAHPAD------TQLVDYEVFCSSRANDKTPDISILDP----TEH-- 401
L +D + + P QL Y V + TP + T H
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA--KLLGFTPG-ELRSYLKGATGHSQ 275
Query: 402 --LTAL-----DYRDEFL--ARRVAHTL--LDVRSVDEFAMMSLNIASHATMADVQ---- 446
+TA+ D + F R+ L + VR + + SL + +
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 447 -LMFAEAGECPAFLESLREDILAH----RHV----------FVICRRGNDSQKVVQLLKR 491
M + + ++ +H + V V+ G Q L
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS--GP-----PQSLY- 387
Query: 492 YVERHRPGVVYDIRNIKEGYKGWQKYVDNRIP 523
G+ +R K Q +RIP
Sbjct: 388 -------GLNLTLRKAKAPSGLDQ----SRIP 408
Score = 35.8 bits (82), Expect = 0.038
Identities = 30/193 (15%), Positives = 52/193 (26%), Gaps = 79/193 (40%)
Query: 49 SVRD---DTIRRDVSNERDTNGAGQRGAH-------STDSQV--GDPAS----PEEIHRE 92
S+ + + ++ V TN G + V G P S + +
Sbjct: 340 SISNLTQEQVQDYV---NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 93 --PNNVNQT-TESDN--PNG-----PVKV-------------------EDDCVWYGE--- 120
P+ ++Q+ PV +++ + +
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 121 --VYS--------KFSKDITERYSRQILLDQVGVMGQ-EKLLNAS---VLIVGCGGTGSP 166
VY S I+ER I+ V + E +L G GG
Sbjct: 457 IPVYDTFDGSDLRVLSGSISERIVDCIIRLPV----KWETTTQFKATHILDFGPGGA--- 509
Query: 167 CIQYLAASGVGTL 179
SG+G L
Sbjct: 510 -------SGLGVL 515
Score = 31.9 bits (72), Expect = 0.56
Identities = 54/336 (16%), Positives = 91/336 (27%), Gaps = 129/336 (38%)
Query: 37 DRA-FKSRPTDGASVRDDTIRRDVSNERDTNGAGQRGAHSTDSQVGDPASPEEIHREPNN 95
+RA + T G S+ D I + + G++G + I RE N
Sbjct: 1647 NRADNHFKDTYGFSILD--IVINNPVNLTIHFGGEKG--------------KRI-RE--N 1687
Query: 96 VNQTTESDNPNGPVKVEDDCVWYGEVYSKFSKDITERYSRQILLDQVGVMG-----QEKL 150
+ +G +K E K K+I E + + G++ Q L
Sbjct: 1688 YSAMIFETIVDGKLKTE-----------KIFKEINEHSTSYTFRSEKGLLSATQFTQPAL 1736
Query: 151 LNASVLIVGC----GGTGSPCI-------QY--LAASGVGTLGLADYDRVELSNLH-RQV 196
G + +Y LA+ + + VE+ + R
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLA-DVMSIESL--VEV--VFYR-- 1789
Query: 197 IHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTR 256
G + R + ++ A + R V + +
Sbjct: 1790 -------GMTMQVAVPRDELGRSNYGMI-----------AINPGR----VAASFSQEALQ 1827
Query: 257 YLLNDACLREGRPLVSASALGLEGQLCV-YNYKGGPCYRCIYPVPPPAETVGTCGDNGVL 315
Y++ R G LV V YN + Y V
Sbjct: 1828 YVVERVGKRTGW-LVEI----------VNYNVENQ-----QY----------------VA 1855
Query: 316 GPVPGVMGTLQAVET-------IKL----LIGLPVM 340
G L+A++T IKL +I L
Sbjct: 1856 A------GDLRALDTVTNVLNFIKLQKIDIIELQKS 1885
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: c.46.1.3
Length = 129
Score = 52.0 bits (125), Expect = 2e-08
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 13/101 (12%)
Query: 418 HTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICR 477
H LDVR+ +EF+ A + + + FLE + ++ V C+
Sbjct: 33 HRYLDVRTPEEFSQGHACGAINVPYM--NRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQ 90
Query: 478 RGNDSQKVVQLLKR--YVERHRPGVVYDIRNIKEGYKGWQK 516
G S K L + +++I GY W K
Sbjct: 91 SGGRSIKATTDLLHAGFT---------GVKDIVGGYSAWAK 122
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol
metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB:
1gn0_A
Length = 108
Score = 51.1 bits (123), Expect = 3e-08
Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 25/108 (23%)
Query: 419 TLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRR 478
L+D+R FAM A H T + AF+ D V V+C
Sbjct: 22 VLVDIRDPQSFAMGHAVQAFHLTNDTL----------GAFMRDNDFD----TPVMVMCYH 67
Query: 479 GNDSQKVVQLLKR--YVERHRPGVVYDIRNIKEGYKGWQKYVDNRIPT 524
GN S+ Q L + Y + +I G++ WQ+ +
Sbjct: 68 GNSSKGAAQYLLQQGYD---------VVYSIDGGFEAWQRQFPAEVAY 106
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus saprophyticus subsp}
Length = 100
Score = 48.7 bits (117), Expect = 1e-07
Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 22/106 (20%)
Query: 410 EFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAH 469
E + ++DVR+ E AM + A M P L ++
Sbjct: 11 EKILDANPVNIVDVRTDQETAMGIIPGAETIPM----------NSIPDNLNYFNDN---- 56
Query: 470 RHVFVICRRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQ 515
++IC+ G S +VVQ L++ G + N++ G +
Sbjct: 57 ETYYIICKAGGRSAQVVQYLEQN------G--VNAVNVEGGMDEFG 94
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich,
structural genomics; 2.00A {Staphylococcus aureus subsp}
PDB: 3iwh_A 3mzz_A
Length = 103
Score = 48.7 bits (117), Expect = 2e-07
Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 22/106 (20%)
Query: 410 EFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAH 469
L ++DVR+ +E AM + A M P L S ++
Sbjct: 11 NKLLESKPVQIVDVRTDEETAMGYIPNAKLIPM----------DTIPDNLNSFNKN---- 56
Query: 470 RHVFVICRRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQ 515
+++C G S KVV+ L+ G D N++ G W
Sbjct: 57 EIYYIVCAGGVRSAKVVEYLEAN------G--IDAVNVEGGMHAWG 94
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase,
structural genomics, NPPSFA; 2.00A {Thermus
thermophilus}
Length = 94
Score = 47.2 bits (113), Expect = 4e-07
Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 23/98 (23%)
Query: 419 TLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRR 478
++DVR D + A + +Q E L R + ++C +
Sbjct: 18 LVVDVRPADRRSTPLPFAAEWVPLEKIQK---------------GEHGLPRRPLLLVCEK 62
Query: 479 GNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQK 516
G SQ L+ G Y+ +++ G + +
Sbjct: 63 GLLSQVAALYLEAE------G--YEAMSLEGGLQALTQ 92
>1vee_A Proline-rich protein family; hypothetical protein, structural
genomics, rhodanese domain, riken structural
genomics/proteomics initiative; NMR {Arabidopsis
thaliana} PDB: 2dcq_A
Length = 134
Score = 46.1 bits (109), Expect = 2e-06
Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Query: 420 LLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDIL--AHRHVFVICR 477
LLD+R+ +F + V ++ + P FL+ L + ++++ +
Sbjct: 24 LLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDK-PGFLKKLSLKFKDPENTTLYILDK 82
Query: 478 RGNDSQKVVQLLKR--YVERHRPGVVYDIRNIKEGYKGWQK 516
+S+ V +L+ + Y I++ EG +GW
Sbjct: 83 FDGNSELVAELVALNGFKS------AYAIKDGAEGPRGWLN 117
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD
DATA with FBAR, structural genomics, PSI; 1.80A
{Mycobacterium tuberculosis}
Length = 148
Score = 46.2 bits (109), Expect = 3e-06
Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 18/124 (14%)
Query: 410 EFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGEC--PAFLESLREDIL 467
E L+ L+DVR E+ + + S V + +A + FL LR+ I
Sbjct: 14 EMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGTHNDNFLAELRDRIP 73
Query: 468 AH-----RHVFVICRRGNDSQKVVQLLKR--YVERHRPGVVYDIRNIKEGYKGWQKYVDN 520
A R V +CR GN S ++ Y N+ +G++G +
Sbjct: 74 ADADQHERPVIFLCRSGNRSIGAAEVATEAGITP------AY---NVLDGFEGHLDAEGH 124
Query: 521 RIPT 524
R T
Sbjct: 125 RGAT 128
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure,
atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A
{Saccharomyces cerevisiae}
Length = 139
Score = 45.1 bits (107), Expect = 5e-06
Identities = 18/152 (11%), Positives = 46/152 (30%), Gaps = 27/152 (17%)
Query: 378 YEVFCSSRANDKT-PDISILDPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMM---- 432
+ + + K +I + + D + L+DVR E++++
Sbjct: 6 MNAWNGTESQSKNVSNIQSYSFEDMKRIVGKHDPNV------VLVDVREPSEYSIVHIPA 59
Query: 433 SLNIASHATMADVQLMFAEAGECPAFLESLREDILAH-RHVFVICRRGNDSQKVVQLLKR 491
S+N+ A A + F + + + + C G + ++
Sbjct: 60 SINVPYR------SHPDAFALDPLEFEKQIGIPKPDSAKELIFYCASGKRGGEAQKVASS 113
Query: 492 YVERHRPGVVY-DIRNIKEGYKGWQKYVDNRI 522
+ G Y + W + +++
Sbjct: 114 H------G--YSNTSLYPGSMNDWVSHGGDKL 137
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp,
NSR437I, NESG, structural genomics, PSI-2, protein
structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Length = 106
Score = 43.0 bits (102), Expect = 2e-05
Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 24/100 (24%)
Query: 419 TLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRR 478
T+LDVR + + A + D ++ + R ++V
Sbjct: 15 TILDVRDRSTYNDGHIMGAMAMPIED-------------LVDRASSSLEKSRDIYVYGAG 61
Query: 479 GNDSQKVVQLLKR--YVERHRPGVVYDIRNIKEGYKGWQK 516
+ + V LL+ + + +K G W+
Sbjct: 62 DEQTSQAVNLLRSAGFE---------HVSELKGGLAAWKA 92
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; 2.50A {Bacillus halodurans} PDB:
3o3w_A
Length = 144
Score = 42.5 bits (100), Expect = 5e-05
Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 31/124 (25%)
Query: 399 TEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAF 458
+ D + ++DVR + + H A + + P
Sbjct: 15 SYETDIADLSIDIKKGYEGIIVVDVRDAEAYK------ECHIPTA-ISI--------P-- 57
Query: 459 LESLREDILAH----RHVFVICR--RGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYK 512
+ ED + + C N + K + G + ++ + G +
Sbjct: 58 GNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQL------G--FRVKELIGGIE 109
Query: 513 GWQK 516
W+K
Sbjct: 110 YWRK 113
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural
genomics, protein structure initiative, northeast
structural genomics consortium; 2.26A {Nostoc SP} PDB:
2kl3_A
Length = 141
Score = 42.4 bits (100), Expect = 5e-05
Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 20/98 (20%)
Query: 419 TLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRR 478
T+LDVR + + A + D ++ + R ++V
Sbjct: 19 TILDVRDRSTYNDGHIMGAMAMPIED-------------LVDRASSSLEKSRDIYVYGAG 65
Query: 479 GNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQK 516
+ + V LL+ G + +K G W+
Sbjct: 66 DEQTSQAVNLLRSA------GFE-HVSELKGGLAAWKA 96
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics,
unknown function, PSI-2, PR structure initiative; NMR
{Helicobacter pylori}
Length = 110
Score = 39.6 bits (93), Expect = 3e-04
Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 20/99 (20%)
Query: 419 TLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRR 478
++DVR +DE+ + L A+ ++ D + + L ++ + V + CR
Sbjct: 18 IVVDVRELDEYEELHLPNATLISVNDQEKLADF-------LSQHKD-----KKVLLHCRA 65
Query: 479 GNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKY 517
G + + + G Y ++ ++KY
Sbjct: 66 GRRALDAAKSMHEL------G--YTPYYLEGNVYDFEKY 96
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 39.4 bits (92), Expect = 4e-04
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 155 VLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHT 199
+ +VG G G L S ++ +AD+D L+ L+R + T
Sbjct: 8 ICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVAT 52
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 2.00A
{Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Length = 124
Score = 39.3 bits (92), Expect = 5e-04
Identities = 13/118 (11%), Positives = 32/118 (27%), Gaps = 25/118 (21%)
Query: 401 HLTALDYRDEFLARRVAHTLLDVRSVD-EFAMMSLNIASHATMADVQLMFAEAGECPAFL 459
++ + + +LDVR+ + + A D+ +
Sbjct: 16 YIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPAKDL----------ATRI 65
Query: 460 ESLREDILAHRHVFVICRRGNDSQ--KVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQ 515
L + V G + + +L G ++ + +GW+
Sbjct: 66 GELDPA----KTYVVYDWTGGTTLGKTALLVLLSA------G--FEAYELAGALEGWK 111
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 40.3 bits (93), Expect = 0.001
Identities = 19/120 (15%), Positives = 45/120 (37%), Gaps = 26/120 (21%)
Query: 155 VLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRF 214
VL++G G P + L SG+ + +A + SAK+
Sbjct: 6 VLMLGSGFVTRPTLDVLTDSGI-KVTVACRT----------------------LESAKKL 42
Query: 215 ISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSAS 274
+ + +T + + D + + ++D+V+ + + +R+ + +V+ S
Sbjct: 43 SAGVQHSTPISLD--VNDDAALDAEVAKHDLVISLIP-YTFHATVIKSAIRQKKHVVTTS 99
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP
binding protein, PSI, MCSG, STR genomics, protein
structure initiative; HET: PGE; 1.76A {Clostridium
difficile}
Length = 134
Score = 38.1 bits (88), Expect = 0.001
Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 29/122 (23%)
Query: 418 HTLLDVRSVDEFAM------MSLNIASHATMADVQLMFAEAGECPAF----------LES 461
+DVR+ E+ +++ + + +V ++ G+ A L+
Sbjct: 18 VIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYKMQGKHEAIQKGFDYVSYKLKD 77
Query: 462 LREDILAHRH-----VFVICRRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQK 516
+ V R G S +V LL G ++ ++ GYK ++
Sbjct: 78 IYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSL------G--VNVYQLEGGYKAYRN 129
Query: 517 YV 518
+V
Sbjct: 130 FV 131
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle,
phosphorylation, plant, hydrolase; NMR {Arabidopsis
thaliana} SCOP: c.46.1.1
Length = 152
Score = 38.4 bits (89), Expect = 0.001
Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 26/133 (19%)
Query: 389 KTPDISILDPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMM----SLNIASHATMAD 444
IS + T+ L L R ++DVR + SL+ AS
Sbjct: 23 MARSISYITSTQ-LLPLHRRPNI-------AIIDVRDEERNYDGHIAGSLHYASG----- 69
Query: 445 VQLMFAEAGECPAFLESLREDILAHRHVFVICRRGNDSQKVVQLLKRYVERHRPGVVY-D 503
F + + ++++++ VF + L Y++ + +
Sbjct: 70 ---SFDD--KISHLVQNVKDK---DTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKN 121
Query: 504 IRNIKEGYKGWQK 516
I ++ G+ GW+
Sbjct: 122 IMILERGFNGWEA 134
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 38.7 bits (89), Expect = 0.004
Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 32/123 (26%)
Query: 155 VLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRF 214
VL++G G P I LAA+ + +A + +A+
Sbjct: 26 VLLLGSGFVAQPVIDTLAANDDINVTVACRT----------------------LANAQAL 63
Query: 215 ISAINRNTI-VHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLN--DACLREGRPLV 271
I + D S ++ DVV+ P + N + +R +V
Sbjct: 64 AKPSGSKAISLDVT----DDSALDKVLADNDVVISLI---PYTFHPNVVKSAIRTKTDVV 116
Query: 272 SAS 274
++S
Sbjct: 117 TSS 119
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide
detoxification, structural genomics, PSI, protein
structure initiative; 1.90A {Pseudomonas aeruginosa}
SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Length = 539
Score = 38.6 bits (89), Expect = 0.005
Identities = 22/131 (16%), Positives = 34/131 (25%), Gaps = 36/131 (27%)
Query: 391 PDISILDPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMM----SLNIASHATMADVQ 446
I++ + AL R E LLDVR D FA + N+
Sbjct: 4 SQIAVRTFHDIRAALLARRELA-------LLDVREEDPFAQAHPLFAANLP--------- 47
Query: 447 LMFAEAGECPAFLESLREDILAHRHVFVICRRGNDSQKVVQLLKRYVERHRPGVVYD-IR 505
+ + + V + Q L G Y +
Sbjct: 48 -----LSRLELEIHARVPRR--DTPITVYDDGEGLAPVAAQRLHDL------G--YSDVA 92
Query: 506 NIKEGYKGWQK 516
+ G GW+
Sbjct: 93 LLDGGLSGWRN 103
Score = 36.2 bits (83), Expect = 0.023
Identities = 10/98 (10%), Positives = 26/98 (26%), Gaps = 21/98 (21%)
Query: 419 TLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRR 478
+LD + +A + A+ + L+ E + + C
Sbjct: 394 RVLDFTASANYAKRHIPGAAWVLRSQ--------------LKQALERLGTAERYVLTCGS 439
Query: 479 GNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQK 516
++ V ++ + + + G W
Sbjct: 440 SLLARFAVAEVQALSGK-------PVFLLDGGTSAWVA 470
Score = 33.2 bits (75), Expect = 0.20
Identities = 22/106 (20%), Positives = 32/106 (30%), Gaps = 18/106 (16%)
Query: 410 EFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAH 469
L R +LD R DE+ MS+ A++ + L D
Sbjct: 139 ALLDARAEAVILDARRFDEYQTMSIPGGISVPGAEL----------VLRVAELAPD--PR 186
Query: 470 RHVFVICRRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQ 515
V V C S Q L G+ + ++ G GW
Sbjct: 187 TRVIVNCAGRTRSIIGTQSLLNA------GIPNPVAALRNGTIGWT 226
Score = 30.1 bits (67), Expect = 2.3
Identities = 13/132 (9%), Positives = 27/132 (20%), Gaps = 12/132 (9%)
Query: 360 KKKEDCVCAHPADTQLVDYEVFCSSRANDKTPDISILDPTEHLTALDYRDEFLARRVAHT 419
H + A + ++ E L
Sbjct: 225 WTLAGQQLEHGQTRRFGAISQDTRKAAAQRARAVADRAGVERLDLAGLAQWQDEHDRTTY 284
Query: 420 LLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRRG 479
LLDVR+ +E+ L + + + ++ G
Sbjct: 285 LLDVRTPEEYEAGHLPGSRSTPGGQLVQETDHVASVR------------GARLVLVDDDG 332
Query: 480 NDSQKVVQLLKR 491
+ L +
Sbjct: 333 VRANMSASWLAQ 344
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics,
rohopseudom palustris, PSI-2, protein structure
initiative; 1.20A {Rhodopseudomonas palustris}
Length = 139
Score = 36.5 bits (85), Expect = 0.005
Identities = 19/124 (15%), Positives = 34/124 (27%), Gaps = 26/124 (20%)
Query: 400 EHLTALDYRDEFLARRVAHTLLDVRSVDEFAMM-----SLNIASHATMADVQLMFAEAGE 454
E LT D + ++D+R E S + L F +
Sbjct: 22 ETLTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGSFSCTRG------MLEFWIDPQ 75
Query: 455 CPAFLESLREDILAHRHVFVICRRGNDSQKVVQLLKR--YVERHRPGVVYDIRNIKEGYK 512
P +ED + C G S + + + +I+ G+
Sbjct: 76 SPYAKPIFQED----KKFVFYCAGGLRSALAAKTAQDMGLK---------PVAHIEGGFG 122
Query: 513 GWQK 516
W+
Sbjct: 123 AWRD 126
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
2.70A {Alicyclobacillus acidocaldarius subsp}
Length = 474
Score = 38.5 bits (89), Expect = 0.005
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 21/98 (21%)
Query: 419 TLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRR 478
LLDVR+VDE+A L A H ++ L + D+ V V CR
Sbjct: 391 WLLDVRNVDEWAGGHLPQAHHIPLSK--------------LAAHIHDVPRDGSVCVYCRT 436
Query: 479 GNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQK 516
G S LL+ + G V D+RN+ GY+ W+
Sbjct: 437 GGRSAIAASLLRAH------G-VGDVRNMVGGYEAWRG 467
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase,
homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Length = 137
Score = 36.1 bits (84), Expect = 0.007
Identities = 27/134 (20%), Positives = 42/134 (31%), Gaps = 35/134 (26%)
Query: 392 DISILDPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNI---ASHATMADVQLM 448
D+ +L P + L + TL+DVR DE M H +
Sbjct: 21 DMVMLSPKDAYKLLQENPDI-------TLIDVRDPDELKAMGKPDVKNYKHMSR------ 67
Query: 449 FAEAGECPAFLES-LREDILAH-RHVFVICRRGNDSQKVVQLLKRYVERHRPGVVY-DIR 505
LE L + L + V V C+ + + L+ Y G + I
Sbjct: 68 --------GKLEPLLAKSGLDPEKPVVVFCKTAARAALAGKTLREY------G--FKTIY 111
Query: 506 NIKEGYKGWQKYVD 519
N + G W +
Sbjct: 112 NSEGGMDKWLEEGL 125
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for
structural genomics of infectious diseases, csgid, HYDR;
2.10A {Staphylococcus aureus}
Length = 466
Score = 37.7 bits (87), Expect = 0.008
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 21/98 (21%)
Query: 419 TLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRR 478
+LDVR+ +E+ L+ A H L + ++V C+
Sbjct: 389 HILDVRNDNEWNNGHLSQAVHVPHGK--------------LLETDLPFNKNDVIYVHCQS 434
Query: 479 GNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQK 516
G S + +L+ G ++I N+ EGYK Q
Sbjct: 435 GIRSSIAIGILEHK------G-YHNIINVNEGYKDIQL 465
>2jtq_A Phage shock protein E; solution structure rhodanese, stress
response, transferase; NMR {Escherichia coli} PDB:
2jtr_A 2jts_A
Length = 85
Score = 34.9 bits (81), Expect = 0.008
Identities = 18/103 (17%), Positives = 30/103 (29%), Gaps = 28/103 (27%)
Query: 417 AHTLLDVRSVDEFAMM----SLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHV 472
A +DVR +++ ++NI E + + D + V
Sbjct: 1 AEHWIDVRVPEQYQQEHVQGAINI--------------PLKEVKERIATAVPD--KNDTV 44
Query: 473 FVICRRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQ 515
V C G S + ++L G Y G K
Sbjct: 45 KVYCNAGRQSGQAKEILSEM------G--YTHVENAGGLKDIA 79
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 36.1 bits (83), Expect = 0.026
Identities = 16/122 (13%), Positives = 36/122 (29%), Gaps = 34/122 (27%)
Query: 155 VLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRF 214
VLI+G G G L + + D + + K F
Sbjct: 19 VLILGAGNIGRAIAWDLKDE--FDVYIGDVN-------------------NENLEKVKEF 57
Query: 215 ISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLN--DACLREGRPLVS 272
+ + + + ++++ +++V+ A P A ++ +V
Sbjct: 58 ATPLKVD--------ASNFDKLVEVMKEFELVIGA---LPGFLGFKSIKAAIKSKVDMVD 106
Query: 273 AS 274
S
Sbjct: 107 VS 108
>3f4a_A Uncharacterized protein YGR203W; protein phosphatase,
rhodanese-like family, structural genomics, PSI-2,
protein structure initiative; HET: MSE; 1.80A
{Saccharomyces cerevisiae} PDB: 3fs5_A*
Length = 169
Score = 34.7 bits (79), Expect = 0.030
Identities = 22/139 (15%), Positives = 43/139 (30%), Gaps = 4/139 (2%)
Query: 379 EVFCSSRANDKTPDISILDPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIAS 438
++ + ++ LDPTE L R ++DVR ++ +
Sbjct: 16 NLYFQGMDSYSITNVKYLDPTE-LHRWMQEGHTTTLREPFQVVDVRG-SDYMGGHIKDGW 73
Query: 439 HATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRR-GNDSQKVVQLLKRYVERHR 497
H + ++ E L + D +V C LL R ++
Sbjct: 74 HYAYSRLKQDPEYLRELKHRLLEKQADGRGALNVIFHCMLSQQRGPSAAMLLLRSLDTAE 133
Query: 498 PGVVYDIRNIKEGYKGWQK 516
+ ++ G+ WQ
Sbjct: 134 LSR-CRLWVLRGGFSRWQS 151
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 36.0 bits (84), Expect = 0.033
Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 28/107 (26%)
Query: 419 TLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLRE---DILAHRHVFVI 475
L+DVR +E + + + P L+ LR+ ++ + +++
Sbjct: 505 YLIDVREPNELKQGMIKGSINI---------------P--LDELRDRLEEVPVDKDIYIT 547
Query: 476 CRRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKYVDNRI 522
C+ G ++L G Y ++N+ G+K + + RI
Sbjct: 548 CQLGMRGYVAARMLMEK------G--YKVKNVDGGFKLYGTVLPERI 586
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 34.4 bits (80), Expect = 0.090
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 2 DTEEAVRKVAQLKEKIRQLKEDLTNAETELETIL 35
DT E +V +LKE+I +L+E+L E EL+ L
Sbjct: 69 DTTEIQNRVKELKEEIDRLEEELRKVEEELKNTL 102
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 34.5 bits (80), Expect = 0.10
Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 28/110 (25%)
Query: 409 DEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLRE---D 465
D+ LLDVR+ E L A + P ++ LR+ +
Sbjct: 478 DQIDNLSEDQLLLDVRNPGELQNGGLEGAVNI---------------P--VDELRDRMHE 520
Query: 466 ILAHRHVFVICRRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQ 515
+ + + + + G + L G Y RN+ GY+ ++
Sbjct: 521 LPKDKEIIIFSQVGLRGNVAYRQLVNN------G--YRARNLIGGYRTYK 562
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 33.4 bits (77), Expect = 0.19
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 154 SVLIVGCGGTGSPCIQYLAASG 175
+ +++G GG G IQ L A
Sbjct: 174 TAVVIGVGGLGHVGIQILRAVS 195
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein
phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Length = 161
Score = 32.3 bits (73), Expect = 0.21
Identities = 21/139 (15%), Positives = 42/139 (30%), Gaps = 23/139 (16%)
Query: 388 DKTPDISILDPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFA----MMSLNIASHATMA 443
K D+ + P + L+ +F ++D R E+ ++N+ +
Sbjct: 17 GKHQDLKYISPEIMASVLN--GKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVE 74
Query: 444 DVQLMFAEAGECPAFLESLREDILAHRHVFVIC-----RRGNDSQKVVQLLKRYVERHRP 498
D L+ R + V RG + V+ R +
Sbjct: 75 DF------------LLKKPIVPTDGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPK 122
Query: 499 GVVYDIRNIKEGYKGWQKY 517
++ +K GYK +
Sbjct: 123 LHYPELYVLKGGYKEFFMK 141
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 33.0 bits (76), Expect = 0.22
Identities = 5/34 (14%), Positives = 19/34 (55%)
Query: 2 DTEEAVRKVAQLKEKIRQLKEDLTNAETELETIL 35
+E + K ++ ++I +L+ ++ + +++ L
Sbjct: 70 PVDELLAKSREIVKRIGELENEVEELKKKIDYYL 103
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 32.7 bits (75), Expect = 0.29
Identities = 7/34 (20%), Positives = 23/34 (67%)
Query: 2 DTEEAVRKVAQLKEKIRQLKEDLTNAETELETIL 35
+ + +++V L+ ++++L++D + + +LE +L
Sbjct: 174 NYADMLKRVEPLRNELQKLEDDAKDNQQKLEALL 207
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 32.1 bits (74), Expect = 0.40
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 2 DTEEAVRKVAQLKEKIRQLKEDLTNAETELETIL 35
+ E + + L E+ ++L+E L E LE +L
Sbjct: 65 EKEALIARGKALGEEAKRLEEALREKEARLEALL 98
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 32.2 bits (74), Expect = 0.41
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 154 SVLIVGCGGTGSPCIQYLAASGVGT 178
V IVG GG G +Q L T
Sbjct: 189 YVAIVGVGGLGHIAVQLLKVMTPAT 213
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid; HET: NAD SKM; 1.45A
{Listeria monocytogenes} PDB: 3toz_A*
Length = 315
Score = 31.8 bits (73), Expect = 0.47
Identities = 16/99 (16%), Positives = 28/99 (28%), Gaps = 20/99 (20%)
Query: 152 NASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSA 211
+ I G GG + A GV + + + +N A
Sbjct: 154 GKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYAN-------------------A 194
Query: 212 KRFISAINRNTIVHAYQ-TLLDTSNACDIIRRYDVVVDA 249
++ + IN T A + D I + +A
Sbjct: 195 EKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNA 233
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family
member 1; tropomysoin, overlap complex, coiled-coils,
contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB:
3mud_C*
Length = 75
Score = 29.1 bits (65), Expect = 0.61
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 10 VAQLKEKIRQLKEDLTNAETELETILEDRAF 40
+ +K+K++ LK D NA E D+ F
Sbjct: 4 MDAIKKKMQMLKLDKENALDRAEQAEADKDF 34
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 0.77
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 13/61 (21%)
Query: 1 MDTEEAVRKVAQLKEKIRQLKEDLT-NAETELE-TILEDR----AFKSRPTDGASVRDDT 54
+D V + + +EK ++ E+ ++E + +R AF +P D
Sbjct: 101 LDAASKVME-QEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD------ADI 153
Query: 55 I 55
I
Sbjct: 154 I 154
Score = 30.1 bits (67), Expect = 1.2
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 6 AVRKVAQLKEKIRQLKED-------LTNAETELETILEDRAFKSRPTDGASVRDDTIRRD 58
++ Q E IR+ +E+ L A +E ++A K + + + + ++
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDL-EEWNQRQSEQVEKN 134
Query: 59 VSNERD 64
N R
Sbjct: 135 KINNRI 140
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 30.8 bits (69), Expect = 1.0
Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 4/114 (3%)
Query: 380 VFCSSRANDKTPDISILDPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASH 439
+ S + D +L H+ + L ++ V + M ++
Sbjct: 315 IASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTEL--VSKMRDMQMDKTEL 372
Query: 440 ATMADVQLMFAEAG--ECPAFLESLREDILAHRHVFVICRRGNDSQKVVQLLKR 491
+ + L ++ PA +E+LRE + A + + + +LL R
Sbjct: 373 GCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLR 426
>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual
specificity phosphatase, nucleus, cytoplasm, rhodanese
domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A
Length = 153
Score = 29.8 bits (66), Expect = 1.2
Identities = 14/107 (13%), Positives = 33/107 (30%), Gaps = 14/107 (13%)
Query: 420 LLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGEC-----PAFLESLREDILAHRHVFV 474
L+D R E+ + A + + + + + + DI + V V
Sbjct: 24 LIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKVLITELIQHSAKHKVDIDCSQKVVV 83
Query: 475 ICRRGNDSQ-----KVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQK 516
+ D + +L +E+ V + G+ + +
Sbjct: 84 YDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHL----LAGGFAEFSR 126
>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A,
GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter
vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*
Length = 220
Score = 30.0 bits (68), Expect = 1.3
Identities = 17/69 (24%), Positives = 26/69 (37%)
Query: 155 VLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRF 214
V+I+G GG I+ L A G + D D + L V+ + + R
Sbjct: 15 VVIIGGGGHAKVVIESLRACGETVAAIVDADPTRRAVLGVPVVGDDLALPMLREQGLSRL 74
Query: 215 ISAINRNTI 223
AI N +
Sbjct: 75 FVAIGDNRL 83
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain
alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus
solfataricus}
Length = 344
Score = 30.3 bits (69), Expect = 1.5
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 155 VLIVGCGGTGSPCIQYLAASGVG 177
V++ G GG IQ L A
Sbjct: 174 VIVNGIGGLAVYTIQILKALMKN 196
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: NAD;
1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A*
1vi2_A*
Length = 312
Score = 30.3 bits (69), Expect = 1.5
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 20/99 (20%)
Query: 152 NASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSA 211
+++++G GG + A G+ + L + A
Sbjct: 148 GKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEK-------------------A 188
Query: 212 KRFISAINRNTIVHA-YQTLLDTSNACDIIRRYDVVVDA 249
F +N NT L D + + D++ +
Sbjct: 189 VAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNG 227
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi
DSS, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Length = 286
Score = 30.2 bits (68), Expect = 1.6
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 153 ASVLIVGCGGTGSPCIQYLAASG 175
++L G G T + LA G
Sbjct: 6 GTLLSFGHGYTARVLSRALAPQG 28
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP:
h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 30.0 bits (67), Expect = 1.7
Identities = 5/34 (14%), Positives = 17/34 (50%)
Query: 4 EEAVRKVAQLKEKIRQLKEDLTNAETELETILED 37
++ ++ L++K++ +++L L+ E
Sbjct: 37 KQLEDELVSLQKKLKATEDELDKYSEALKDAQEK 70
Score = 29.2 bits (65), Expect = 3.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 4 EEAVRKVAQLKEKIRQLKEDLTNAETELET 33
E+ +K + +E+I+ L + L AET E
Sbjct: 212 EKYSQKEDKYEEEIKVLSDKLKEAETRAEF 241
Score = 27.7 bits (61), Expect = 8.2
Identities = 6/31 (19%), Positives = 17/31 (54%)
Query: 4 EEAVRKVAQLKEKIRQLKEDLTNAETELETI 34
++ ++ K K + + E+L +A ++ +I
Sbjct: 254 DDLEDELYAQKLKYKAISEELDHALNDMTSI 284
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Length = 144
Score = 29.0 bits (66), Expect = 1.9
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 148 EKLLNASVLIVGCGGTGSPCIQYLAASGV 176
K +L+VG G S Y +
Sbjct: 17 RKNGGNKILLVGNGMLASEIAPYFSYPQY 45
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor,
ligand binding; HET: LPP; 2.4A {Drosophila melanogaster}
SCOP: a.123.1.1
Length = 279
Score = 29.5 bits (66), Expect = 2.3
Identities = 17/130 (13%), Positives = 35/130 (26%), Gaps = 7/130 (5%)
Query: 367 CAHPADTQLVDYEVFCSSRANDKTPDISILDPTEHLTALDYR-DEFLARRVAHTLLDVRS 425
D L P + + A + + + R
Sbjct: 101 SIVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRI 160
Query: 426 VDEFA----MMSLNIASHATMADVQLMFAEAG--ECPAFLESLREDILAHRHVFVICRRG 479
+ E + ++L+ + + + L + + A +E RE + A
Sbjct: 161 LSELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHP 220
Query: 480 NDSQKVVQLL 489
D + QLL
Sbjct: 221 GDDGRFAQLL 230
>3op3_A M-phase inducer phosphatase 3; structural genomics, structural
genomics consortium, SGC, Al alpha sandwich, kinase,
cytosol, hydrolase; 2.63A {Homo sapiens}
Length = 216
Score = 29.3 bits (65), Expect = 2.5
Identities = 24/159 (15%), Positives = 53/159 (33%), Gaps = 15/159 (9%)
Query: 362 KEDCVCAHPADTQLVDYEVFCSSRANDKTPDISILDPTEHLTALDYRDEFLARRVAHTLL 421
+ED H + S + ++ E + AL +F ++
Sbjct: 28 EEDSNQGHLIGDFSKVCALPTVSGKHQDLKYVN----PETVAAL-LSGKFQGLIEKFYVI 82
Query: 422 DVRSVDEFA----MMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICR 477
D R E+ +LN+ S + + L + P ++ I+ H
Sbjct: 83 DCRYPYEYLGGHIQGALNLYSQEELFNFFL------KKPIVPLDTQKRIIIVFHCEFSSE 136
Query: 478 RGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQK 516
RG + ++ R + ++ ++ +K GY+ +
Sbjct: 137 RGPRMCRCLREEDRSLNQYPALYYPELYILKGGYRDFFP 175
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 29.7 bits (66), Expect = 2.6
Identities = 16/113 (14%), Positives = 27/113 (23%), Gaps = 18/113 (15%)
Query: 73 AHSTDSQVGDPASPEEIHREPNNVNQTTESDNPNGPVKVEDDCVWYGEVYSKF------- 125
+ S P + + E D + + G F
Sbjct: 2 SPSVLEPQSVPTLVNVGLKAVGRNDAPVERDARGLSKPLLELMPTLGTDAFTFSPIREST 61
Query: 126 -SKDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVG 177
S+ +T RY + ++IVG G G L+
Sbjct: 62 VSRAMTRRYFADLD----------AHAETDIVIVGAGSCGLSAAYVLSTLRPD 104
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 29.5 bits (67), Expect = 2.6
Identities = 2/34 (5%), Positives = 11/34 (32%)
Query: 2 DTEEAVRKVAQLKEKIRQLKEDLTNAETELETIL 35
+ + ++++++ L E +
Sbjct: 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRA 150
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 29.3 bits (66), Expect = 3.1
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 154 SVLIVGCGGTGSPCIQYLAASG 175
+LI GCG G + L A G
Sbjct: 5 KILIAGCGDLGLELARRLTAQG 26
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular
signaling, cytoplasm, isopeptide bond, nucleus,
phosphoprotein, UBL conjugation; 2.70A {Mus musculus}
PDB: 3f89_A 2zvo_B 2zvn_B
Length = 94
Score = 27.4 bits (60), Expect = 3.3
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 4 EEAVRKVAQLKEKIRQLKEDLTNAETELETI 34
++A + +E I +LKE+ + +ET+
Sbjct: 12 QQAEEALVAKQELIDKLKEEAEQHKIVMETV 42
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 28.9 bits (65), Expect = 3.8
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 154 SVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVEL 189
VL+VG G G G+ + E+
Sbjct: 183 KVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEV 218
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 28.8 bits (64), Expect = 4.1
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 150 LLNASVLIVGCGGTGSPCIQYLAASGV 176
+ A+V ++G G G + AA G
Sbjct: 153 IHGANVAVLGLGRVGMSVARKFAALGA 179
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex,
amino-acid biosynthesis, aromatic A biosynthesis, NAD,
oxidoreductase; HET: NAD; 1.00A {Corynebacterium
glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Length = 283
Score = 28.7 bits (65), Expect = 4.1
Identities = 25/100 (25%), Positives = 32/100 (32%), Gaps = 27/100 (27%)
Query: 152 NASVLIVGCGGTGSPCIQYLAASGVGTLGLA--DYDRVELSNLHRQVIHTTHTIGQPKVT 209
SV+ VG GG G+ L GV L +A D R
Sbjct: 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSR----------------------- 163
Query: 210 SAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDA 249
A+ IN A +D D+I D VV+A
Sbjct: 164 -AQALADVINNAVGREA-VVGVDARGIEDVIAAADGVVNA 201
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious
disease, transferase structural genomics; 2.10A
{Mycobacterium tuberculosis} PDB: 3p3a_A
Length = 318
Score = 28.8 bits (65), Expect = 4.5
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 398 PTEHLTALDYRDEFLARRVAHTLLDVRSVDEFA 430
+RD+ LA A L+DVRS +E+
Sbjct: 173 QRNDAPIRAFRDDVLAILGAQPLIDVRSPEEYT 205
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia,
homologous recomination, polymorphism, phosphoprotein,
beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB:
3eu7_A
Length = 356
Score = 28.6 bits (63), Expect = 4.5
Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 17/107 (15%)
Query: 262 ACLREGRPLVSASALGLEGQLCVYNYKGGPCYRCIYPVPPPAETVGTCGDNGVLGPVPGV 321
L + R LVS+S + Q+ V + + + PP ET+ T V G+
Sbjct: 140 LGLTKRR-LVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILT------FAEVQGM 192
Query: 322 MGTLQAVETIKLLIGLPVMDKLLVYDAELSKFLS-VKLRKKKEDCVC 367
+ L+G +M+ +++++ + + L + + + VC
Sbjct: 193 Q---------EALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVC 230
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 28.6 bits (65), Expect = 4.7
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 155 VLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVE 188
V ++G G TG+ LA + + L D ++E
Sbjct: 11 VSVIGAGFTGATTAFLLAQKELADVVLVDIPQLE 44
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding
domain, orphan nuclear receptor, testicular R 4,
signaling protein; 3.00A {Homo sapiens}
Length = 249
Score = 28.4 bits (63), Expect = 5.1
Identities = 17/122 (13%), Positives = 42/122 (34%), Gaps = 9/122 (7%)
Query: 379 EVFC---SSRANDKTPDISILDPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFA----M 431
E+F + A + + HL D+ R+ + + + EF
Sbjct: 78 ELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAK 137
Query: 432 MSLNIASHATMADVQLMFAEAG--ECPAFLESLREDILAHRHVFVICRRGNDSQKVVQLL 489
+ ++ +A + + L + + +E +E +V D+ ++ ++L
Sbjct: 138 LDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEAAQMELQDYVQATYSEDTYRLARIL 197
Query: 490 KR 491
R
Sbjct: 198 VR 199
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis;
HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP:
a.151.1.1 c.2.1.7 d.58.39.1
Length = 404
Score = 28.7 bits (65), Expect = 5.6
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 148 EKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLA--DYDRVE 188
L + +VL+VG G G + L GV + +A Y+R
Sbjct: 163 GSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAV 205
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 28.6 bits (62), Expect = 5.6
Identities = 17/34 (50%), Positives = 19/34 (55%)
Query: 153 ASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186
A VLIVG G TGS C L G L LA +D+
Sbjct: 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDK 35
>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo
sapiens} SCOP: c.46.1.1
Length = 154
Score = 27.8 bits (61), Expect = 5.6
Identities = 13/112 (11%), Positives = 31/112 (27%), Gaps = 21/112 (18%)
Query: 420 LLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGE--------CPAFLESLREDILAHRH 471
L+D R + + + A + + + L + G +
Sbjct: 36 LMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALFTRGEDRDRFTRR-CGTDT 94
Query: 472 VFVICRRGNDSQKVVQ-------LLKRYVERHRPGVVYDIRNIKEGYKGWQK 516
V + +D + LLK+ + ++ G+ +Q
Sbjct: 95 VVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAFY-----LEGGFSKFQA 141
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 28.4 bits (64), Expect = 5.7
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 154 SVLIVGCGGTGSPCIQYLAASG 175
+V+I G G G + + G
Sbjct: 198 TVVIQGAGPLGLFGVVIARSLG 219
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 28.6 bits (64), Expect = 6.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 2 DTEEAVRKVAQLKEKIRQLKEDLTNAETELETILED 37
++ + ++A+L+ +I +LK L E EL+ L
Sbjct: 1068 ESSDLHEQIAELQAQIAELKAQLAKKEEELQAALAR 1103
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer,
alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Length = 223
Score = 28.0 bits (61), Expect = 6.4
Identities = 17/170 (10%), Positives = 38/170 (22%), Gaps = 7/170 (4%)
Query: 105 PNGPVKVEDDCVWYGEVYSKFSKDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTG 164
++ + + + E I G ++ + V
Sbjct: 39 KPTKGCEPENVEEFEKELKYSYSLLAEVSDIIIYGRTYGTHKHAHVIKRVIKDVVIPEES 98
Query: 165 SPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIV 224
+ L V L + E + + ++ +
Sbjct: 99 --VYELLKKLNVRKLWIGTPYIKERTLEEVEWWRNKG----FEIVGYDGLGKIRGIDISN 152
Query: 225 HAYQTLLD-TSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSA 273
T+ + + + D V AC T + P+VS
Sbjct: 153 TPIFTIYRLVKRHLNEVLKADAVYIACTALSTYEAVQYLHEDLDMPVVSE 202
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 28.2 bits (62), Expect = 6.7
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 123 SKFSKDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVG 177
S S+ +T RY + + +K + V+IVG G +G +A +
Sbjct: 46 STVSRAMTSRYFKDL----------DKFAVSDVIIVGAGSSGLSAAYVIAKNRPD 90
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 28.4 bits (64), Expect = 6.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 152 NASVLIVGCGGTGSPCIQYLAASGVGTLGL 181
+ V++VG G G LA GV TL +
Sbjct: 3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLV 32
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 28.2 bits (63), Expect = 7.6
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 152 NASVLIVGCGGTGSPCIQYLAASGVGTLGL 181
+ V++VG G G +A G L L
Sbjct: 4 SYDVVVVGGGPVGLATAWQVAERGHRVLVL 33
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 27.6 bits (61), Expect = 7.9
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 147 QEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGL 181
E L+ +VL G G P + G T G+
Sbjct: 19 NESNLDKTVLDCGA-GGDLPPLSIFVEDGYKTYGI 52
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
unknown function; 1.58A {Listeria innocua}
Length = 125
Score = 27.0 bits (60), Expect = 8.1
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 218 INRNTIVHAYQTLLD 232
+N NT+ AYQ L
Sbjct: 49 VNPNTVSRAYQELER 63
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein,
phosphorylation, PAIR-RULE protein; 2.8A {Drosophila
melanogaster} PDB: 2xhs_A
Length = 243
Score = 27.8 bits (62), Expect = 8.3
Identities = 5/68 (7%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 426 VDEFAMMSLNIASHATMADVQLMFAEAG--ECPAFLESLREDILAHRHVFVICRRGNDSQ 483
++ + ++ + M + L+ + +++ A + + + +
Sbjct: 138 QNKLQDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTLTCYPSVND 197
Query: 484 KVVQLLKR 491
K L+
Sbjct: 198 KFRGLVNI 205
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle
protein; 2.50A {Gallus gallus}
Length = 101
Score = 26.4 bits (58), Expect = 8.5
Identities = 4/40 (10%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 2 DTEEAVRK----VAQLKEKIRQLKEDLTNAETELETILED 37
E+ ++ L++K++ ++++ ++ E
Sbjct: 34 QAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEK 73
>3hh2_C Follistatin; protein-protein complex, TB domain, cystine knot
motif, TGF- fold, disulfide linked dimer, CLE PAIR of
basic residues, cytokine; HET: CIT; 2.15A {Homo sapiens}
PDB: 2b0u_C* 2p6a_D
Length = 288
Score = 27.7 bits (60), Expect = 8.6
Identities = 9/36 (25%), Positives = 11/36 (30%)
Query: 279 EGQLCVYNYKGGPCYRCIYPVPPPAETVGTCGDNGV 314
G+ C N K P C CG +G
Sbjct: 73 PGKKCRMNKKNKPRCVCAPDCSNITWKGPVCGLDGK 108
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 26.9 bits (60), Expect = 8.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 1 MDTEEAVRKVAQLKEKIRQLKEDLTNAETELE 32
+ EE +K + KEK + LK + + E EL
Sbjct: 82 LTAEEWKKKYEKEKEKNKALKSVIQHLEVELN 113
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 27.9 bits (63), Expect = 9.7
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 13/62 (20%)
Query: 4 EEAVR-----KVAQLKEKIRQLKEDLTNAETELETILEDRAFKSRPTDGASVRDDTIRRD 58
+ AV+ K A L++ ++L+E + + + + + + + + V D I
Sbjct: 411 DAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWK--------EKQGQENSEVTVDDIAMV 462
Query: 59 VS 60
VS
Sbjct: 463 VS 464
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.399
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,099,088
Number of extensions: 506248
Number of successful extensions: 1728
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1646
Number of HSP's successfully gapped: 127
Length of query: 525
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 427
Effective length of database: 3,965,535
Effective search space: 1693283445
Effective search space used: 1693283445
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)