RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13373
(525 letters)
>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding
protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 529
Score = 204 bits (521), Expect = 4e-60
Identities = 40/181 (22%), Positives = 69/181 (38%), Gaps = 7/181 (3%)
Query: 124 KFSKDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLAD 183
K K+ ++Y RQ+ L G GQE L +A V ++ TG+ ++ L G+G+ + D
Sbjct: 1 KLLKE--QKYDRQLRL--WGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIID 56
Query: 184 YDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLD--TSNACDIIR 241
++V + +IG+ + +A F+ +N + + + N
Sbjct: 57 GNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFC 116
Query: 242 RYDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCVYNYKGGPCYRCIYPVPP 301
R+ VVV T L D PL+ GL G + + K P
Sbjct: 117 RFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRII-IKEHPVIESHPDNAL 175
Query: 302 P 302
Sbjct: 176 E 176
>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 426
Score = 189 bits (482), Expect = 2e-55
Identities = 43/194 (22%), Positives = 74/194 (38%), Gaps = 14/194 (7%)
Query: 128 DITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRV 187
+ + ++ + Q L VL++G GG G ++ LA SG + + D D +
Sbjct: 14 ERSGPFTHPDFEPSTESL-QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTI 72
Query: 188 ELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVV 247
++SNL+RQ + IG+PK A F++ N V + + N R++ ++V
Sbjct: 73 DVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFND-TFYRQFHIIV 131
Query: 248 DACDNAPTRYLLNDACLR------------EGRPLVSASALGLEGQLCVYNYKGGPCYRC 295
D+ R +N + PL+ G +G V C C
Sbjct: 132 CGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIEC 191
Query: 296 IYPVPPPAETVGTC 309
+ PP C
Sbjct: 192 TLELYPPQVNFPMC 205
>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein
MoeB {Escherichia coli [TaxId: 562]}
Length = 247
Score = 177 bits (449), Expect = 8e-53
Identities = 104/249 (41%), Positives = 147/249 (59%), Gaps = 7/249 (2%)
Query: 123 SKFSKDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLA 182
++ S RY+RQI+L GQE L ++ VLIVG GG G QYLA++GVG L L
Sbjct: 1 AELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLL 60
Query: 183 DYDRVELSNLHRQVIHTTHTIGQPKVTSAKRFISAINRNTIVHAYQTLLDTSNACDIIRR 242
D+D V LSNL RQ +H+ T+GQPKV SA+ ++ IN + + LLD + +I
Sbjct: 61 DFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIAE 120
Query: 243 YDVVVDACDNAPTRYLLNDACLREGRPLVSASALGLEGQLCVYNYKGG-PCYRCIYPVPP 301
+D+V+D DN R LN C PLVS +A+ +EGQ+ V+ Y+ G PCYRC+ +
Sbjct: 121 HDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGEPCYRCLSRLFG 180
Query: 302 PAETVGTCGDNGVLGPVPGVMGTLQAVETIKLLIGL--PVMDKLLVYDAELSKFLSVKLR 359
TC + GV+ P+ GV+G+LQA+E IK+L G P K+++YDA +F +KL
Sbjct: 181 ENAL--TCVEAGVMAPLIGVIGSLQAMEAIKMLAGYGKPASGKIVMYDAMTCQFREMKLM 238
Query: 360 KKKEDC-VC 367
+ C VC
Sbjct: 239 RNP-GCEVC 246
>d1tq1a_ c.46.1.3 (A:) Thiosulfate
sulfurtransferase/Senescence-associated protein {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 119
Score = 44.5 bits (104), Expect = 3e-06
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 9/99 (9%)
Query: 418 HTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICR 477
H LDVR+ +EF+ A + + + FLE + ++ V C+
Sbjct: 23 HRYLDVRTPEEFSQGHACGAINVPYM--NRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQ 80
Query: 478 RGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQK 516
G S K L +++I GY W K
Sbjct: 81 SGGRSIKATTDLLHAGFT-------GVKDIVGGYSAWAK 112
>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli
[TaxId: 562]}
Length = 108
Score = 36.3 bits (83), Expect = 0.001
Identities = 26/121 (21%), Positives = 41/121 (33%), Gaps = 23/121 (19%)
Query: 396 LDPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGEC 455
+D E + D + + L+D+R FAM A H
Sbjct: 1 MDQFECINVADAHQKLQEKEA--VLVDIRDPQSFAMGHAVQAFH--------------LT 44
Query: 456 PAFLESLREDILAHRHVFVICRRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQ 515
L + D V V+C GN S+ Q L + G + +I G++ WQ
Sbjct: 45 NDTLGAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQ------G-YDVVYSIDGGFEAWQ 97
Query: 516 K 516
+
Sbjct: 98 R 98
>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice
blast fungus (Magnaporthe grisea) [TaxId: 148305]}
Length = 182
Score = 36.2 bits (82), Expect = 0.004
Identities = 24/110 (21%), Positives = 37/110 (33%), Gaps = 2/110 (1%)
Query: 154 SVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKR 213
SVL++G G P + L SG+ + +A L V H+T +A
Sbjct: 4 SVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALD 62
Query: 214 FISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDAC 263
A + I + IR+ VV +P L+ A
Sbjct: 63 AEVAKHDLVI-SLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAA 111
>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]}
Length = 161
Score = 34.7 bits (79), Expect = 0.009
Identities = 19/130 (14%), Positives = 44/130 (33%), Gaps = 5/130 (3%)
Query: 387 NDKTPDISILDPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQ 446
K D+ + P + L+ + L + ++D R E+ + A + M +
Sbjct: 16 AGKHQDLKYISPEIMASVLNGKFANLIKEF--VIIDCRYPYEYEGGHIKGAVNLHMEE-- 71
Query: 447 LMFAEAGECPAFLESLREDILAHRHVFVICRRGNDSQKVVQLLKRYVERHRPGVVYDIRN 506
+ + + + ++ H RG + V+ R + ++
Sbjct: 72 -EVEDFLLKKPIVPTDGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYV 130
Query: 507 IKEGYKGWQK 516
+K GYK +
Sbjct: 131 LKGGYKEFFM 140
>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 154
Score = 33.3 bits (75), Expect = 0.031
Identities = 12/106 (11%), Positives = 29/106 (27%), Gaps = 9/106 (8%)
Query: 420 LLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAF----LESLREDILAHR---HV 472
L+D R + + + A + + + L + G P R+ V
Sbjct: 36 LMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALFTRGEDRDRFTRRCGTDTV 95
Query: 473 FVICRRGNDSQKVVQLLKRYVERHRP--GVVYDIRNIKEGYKGWQK 516
+ +D + + ++ G+ +Q
Sbjct: 96 VLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAFYLEGGFSKFQA 141
>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE
{Escherichia coli [TaxId: 562]}
Length = 170
Score = 33.0 bits (74), Expect = 0.049
Identities = 14/111 (12%), Positives = 24/111 (21%), Gaps = 3/111 (2%)
Query: 152 NASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSA 211
+L++G GG S + S + + + L + HT
Sbjct: 18 GLRILLIGAGGA-SRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELE 76
Query: 212 KRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDA 262
I T + +I D L
Sbjct: 77 GHEFDLIINATSSGISGDIPAIP--SSLIHPGIYCYDMFYQKGKTPFLAWC 125
>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 136
Score = 32.2 bits (72), Expect = 0.050
Identities = 30/140 (21%), Positives = 43/140 (30%), Gaps = 21/140 (15%)
Query: 379 EVFCSSRANDKTPD--ISILDPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNI 436
E+F K + T L A + + L R +LD R DE+ MS+
Sbjct: 1 ELFRDVNVPSKAFGELVEAERHTPSLAAEEVQ-ALLDARAEAVILDARRFDEYQTMSIPG 59
Query: 437 ASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRRGNDSQKVVQLLKRYVERH 496
A++ L AE P V V C S Q L
Sbjct: 60 GISVPGAELVLRVAELAPDP------------RTRVIVNCAGRTRSIIGTQSLLNA---- 103
Query: 497 RPGVVYDIRNIKEGYKGWQK 516
G+ + ++ G GW
Sbjct: 104 --GIPNPVAALRNGTIGWTL 121
>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 101
Score = 31.1 bits (69), Expect = 0.071
Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 26/124 (20%)
Query: 393 ISILDPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEA 452
I++ + AL R E LLDVR D FA A++ ++ ++
Sbjct: 1 IAVRTFHDIRAALLARREL-------ALLDVREEDPFAQAHPLFAANLPLSRLE------ 47
Query: 453 GECPAFLESLREDILAHRHVFVICRRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYK 512
R+ + +R D+ + G
Sbjct: 48 -LEIHARVPRRDTPITVYDDGEGLA------------PVAAQRLHDLGYSDVALLDGGLS 94
Query: 513 GWQK 516
GW+
Sbjct: 95 GWRN 98
>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 159
Score = 31.9 bits (72), Expect = 0.10
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 144 VMGQEKLLNASVLIVGCGGTGSPCIQYLAASGVGT-LGLADYDRVELSNLHRQVIHTTHT 202
++ ++KL + +VG G G C + G+ L L D D +L + H +
Sbjct: 11 LVPEDKLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLF 70
Query: 203 IGQPKVTSAKRFISAINRNTIV 224
+ PK+ K + + N ++
Sbjct: 71 LSTPKIVFGKDYNVSANSKLVI 92
>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 32.1 bits (72), Expect = 0.10
Identities = 19/146 (13%), Positives = 46/146 (31%), Gaps = 15/146 (10%)
Query: 377 DYEVFCSSRA-NDKTPDISILDPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLN 435
DY + + K D+ + P + L + + + ++D R E+ +
Sbjct: 5 DYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKF--VIVDCRYPYEYEGGHIK 62
Query: 436 IASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVI--CRRGNDSQKVVQLLK--- 490
A + + F + L R + + ++ + ++
Sbjct: 63 TAVNLPLERDAESFL-------LKSPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERD 115
Query: 491 RYVERHRPGVVYDIRNIKEGYKGWQK 516
R V + ++ +K GYK +
Sbjct: 116 RAVNDYPSLYYPEMYILKGGYKEFFP 141
>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 150
Score = 31.2 bits (70), Expect = 0.14
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 152 NASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDR 186
A +++VG G G + +G + L D +
Sbjct: 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK 37
>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 140
Score = 31.2 bits (70), Expect = 0.14
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 155 VLIVGCGGTGSPCIQYLAASGVGT-LGLADYDRVELSNLHRQVIHTTHTIGQPKVTS 210
+ IVG G GS L G + L D D+ +IH T + + +
Sbjct: 3 IGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA 59
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus
thermophilus, strain hb27 [TaxId: 274]}
Length = 110
Score = 30.3 bits (68), Expect = 0.20
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 1 MDTEEAVRKVAQLKEKIRQLKEDLTNAETELETIL 35
+ E + + L E+ ++L+E L E LE +L
Sbjct: 64 EEKEALIARGKALGEEAKRLEEALREKEARLEALL 98
>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain
{Archaeon Methanopyrus kandleri [TaxId: 2320]}
Length = 159
Score = 29.7 bits (66), Expect = 0.47
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 148 EKLLNASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHT 202
L + +VL+VG G G + L GV + +A+ L R +
Sbjct: 20 GSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVR 74
>d2p1ta1 a.123.1.1 (A:229-458) Retinoid-X receptor alpha (RXR-alpha)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 230
Score = 30.0 bits (67), Expect = 0.61
Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 4/114 (3%)
Query: 380 VFCSSRANDKTPDISILDPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASH 439
+ S + D +L H+ + L ++ V + M ++
Sbjct: 82 IASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTEL--VSKMRDMQMDKTEL 139
Query: 440 ATMADVQLMFAEAG--ECPAFLESLREDILAHRHVFVICRRGNDSQKVVQLLKR 491
+ + L ++ PA +E+LRE + A + + + +LL R
Sbjct: 140 GCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLR 193
>d2p54a1 a.123.1.1 (A:202-468) Peroxisome proliferator activated
receptor alpha, PPAR-alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 267
Score = 29.6 bits (66), Expect = 0.88
Identities = 13/91 (14%), Positives = 31/91 (34%), Gaps = 6/91 (6%)
Query: 407 YRDEFLARRVAHTLLDVRSVDEFAM----MSLNIASHATMADVQLMFAEA--GECPAFLE 460
EFL + +FAM + L+ + + + + +E
Sbjct: 138 ITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIE 197
Query: 461 SLREDILAHRHVFVICRRGNDSQKVVQLLKR 491
++E I+ + + +D +LL++
Sbjct: 198 KMQEGIVHVLRLHLQSNHPDDIFLFPKLLQK 228
>d1pzla_ a.123.1.1 (A:) Hepatocyte nuclear factor 4-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 29.3 bits (65), Expect = 0.94
Identities = 14/114 (12%), Positives = 42/114 (36%), Gaps = 4/114 (3%)
Query: 380 VFCSSRANDKTPDISILDPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASH 439
+ +++ + D+ +L + ++R L ++ V F + ++ +
Sbjct: 84 LLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDEL--VLPFQELQIDDNEY 141
Query: 440 ATMADVQLMFAEAG--ECPAFLESLREDILAHRHVFVICRRGNDSQKVVQLLKR 491
A + + +A P ++ LR + ++ R+ + + +LL
Sbjct: 142 AYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLL 195
>d2b50b1 a.123.1.1 (B:211-475) Peroxisome proliferator-activated
receptor delta, PPAR-DELTA {Human (Homo sapiens) [TaxId:
9606]}
Length = 265
Score = 29.5 bits (66), Expect = 0.95
Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 7/106 (6%)
Query: 393 ISILDPTEHLTALDY-RDEFLARRVAHTLLDVRSVDEFA----MMSLNIASHATMADVQL 447
I D + EFL + EFA + L+ + A +
Sbjct: 123 IVNKDGLLVANGSGFVTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAII 182
Query: 448 MFAEAG--ECPAFLESLREDILAHRHVFVICRRGNDSQKVVQLLKR 491
+ + +E++++ IL + + Q +LL++
Sbjct: 183 LCGDRPGLMNVPRVEAIQDTILRALEFHLQANHPDAQQLFPKLLQK 228
>d2fvja1 a.123.1.1 (A:207-477) Peroxisome proliferator activated
receptor gamma, PPAR-gamma {Human (Homo sapiens) [TaxId:
9606]}
Length = 271
Score = 29.6 bits (66), Expect = 0.97
Identities = 13/115 (11%), Positives = 39/115 (33%), Gaps = 2/115 (1%)
Query: 379 EVFCSSRANDKTPDISILDPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIAS 438
E+ + A+ D ++ + ++ +F + L+ +
Sbjct: 118 EIIYTMLASLMNKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSD 177
Query: 439 HATMADVQLMFAEA--GECPAFLESLREDILAHRHVFVICRRGNDSQKVVQLLKR 491
A V ++ + +E +++++L + + SQ +LL++
Sbjct: 178 LAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQK 232
>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii
[TaxId: 5811]}
Length = 154
Score = 28.5 bits (63), Expect = 1.0
Identities = 9/56 (16%), Positives = 16/56 (28%)
Query: 155 VLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTS 210
V ++G G G A + + L D + + H T +
Sbjct: 10 VAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 65
>d2o70a1 a.288.1.1 (A:2-166) OHCU decarboxylase, UraD {Zebrafish
(Brachydanio rerio) [TaxId: 7955]}
Length = 165
Score = 28.7 bits (64), Expect = 1.1
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 3/81 (3%)
Query: 417 AHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVIC 476
H L R + + + + L AE +E FVIC
Sbjct: 65 CHPDLAGRDLQSGTLTPESQEEQSQAGMTTLDSAEIVHMYRLNSEYKER---FGFPFVIC 121
Query: 477 RRGNDSQKVVQLLKRYVERHR 497
R N+ +V+ L ++ R
Sbjct: 122 ARLNNKADIVRQLSERLKNRR 142
>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide
dehydrogenase, Sud) {Wolinella succinogenes [TaxId:
844]}
Length = 137
Score = 28.3 bits (62), Expect = 1.1
Identities = 17/126 (13%), Positives = 31/126 (24%), Gaps = 23/126 (18%)
Query: 391 PDISILDPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFA 450
D+ +L P + L + L+DVR DE M + +
Sbjct: 20 ADMVMLSPKDAYKLLQENPDIT-------LIDVRDPDELKAMGKPDVKNYKHMSRGKLE- 71
Query: 451 EAGECPAFLESLREDILAHRHVFVICRRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEG 510
L + R + + + + I N + G
Sbjct: 72 ----PLLAKSGLDPEKPVVVFCKTAARAALAGKTLREYGFK-----------TIYNSEGG 116
Query: 511 YKGWQK 516
W +
Sbjct: 117 MDKWLE 122
>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium
thermocellum [TaxId: 1515]}
Length = 142
Score = 28.0 bits (62), Expect = 1.3
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 155 VLIVGCGGTGSPCIQYLAASGVGT-LGLADYDRVELSNLHRQVIHTTHTIGQPKVT 209
V I+G G G+ +A L L D + + + H +GQ +
Sbjct: 4 VAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLY 59
>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus
aurantiacus [TaxId: 1108]}
Length = 142
Score = 28.1 bits (62), Expect = 1.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 155 VLIVGCGGTGSPCIQYLAASGVGTLGL 181
+ I+G G GS +LAA +G + L
Sbjct: 4 ISIIGAGFVGSTTAHWLAAKELGDIVL 30
>d1pq9a_ a.123.1.1 (A:) Oxysterols receptor LXR-beta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 239
Score = 28.9 bits (64), Expect = 1.4
Identities = 13/114 (11%), Positives = 41/114 (35%), Gaps = 4/114 (3%)
Query: 380 VFCSSRANDKTPDISILDPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASH 439
+ ++R + + + D+ L + + + + L+ A +
Sbjct: 94 LLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEF--SRAMRRLGLDDAEY 151
Query: 440 ATMADVQLMFAEAGEC--PAFLESLREDILAHRHVFVICRRGNDSQKVVQLLKR 491
A + + + A+ P +E+L++ + + +R D + ++L +
Sbjct: 152 ALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMK 205
>d1hg4a_ a.123.1.1 (A:) Ultraspiracle protein, usp {Drosophila
melanogaster [TaxId: 7227]}
Length = 265
Score = 29.0 bits (64), Expect = 1.5
Identities = 23/174 (13%), Positives = 55/174 (31%), Gaps = 9/174 (5%)
Query: 325 LQAVETIKLLIG---LPVMDKLLVYDAELSKFLSVKL--RKKKEDCVCAHPADTQLVDYE 379
Q VE +++ +P+ D++++ A + L + + ++
Sbjct: 53 FQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHD 112
Query: 380 VFCSSRANDKTPDISILDPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASH 439
R+ P L+ + ++ L ++ + ++L+
Sbjct: 113 GSFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRILSEL--SVKMKRLNLDRREL 170
Query: 440 ATMADVQL--MFAEAGECPAFLESLREDILAHRHVFVICRRGNDSQKVVQLLKR 491
+ + + L + A +E RE + A D + QLL R
Sbjct: 171 SCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLR 224
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate
ligase MurD {Escherichia coli [TaxId: 562]}
Length = 93
Score = 27.3 bits (60), Expect = 1.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 150 LLNASVLIVGCGGTGSPCIQYLAASG 175
+V+I+G G TG C+ + A G
Sbjct: 3 YQGKNVVIIGLGLTGLSCVDFFLARG 28
>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein
HI0607 {Haemophilus influenzae [TaxId: 727]}
Length = 167
Score = 28.3 bits (62), Expect = 1.7
Identities = 17/114 (14%), Positives = 30/114 (26%), Gaps = 4/114 (3%)
Query: 152 NASVLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSA 211
NA V++ G GG + SG L + + L + + +
Sbjct: 17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLENQQADI 76
Query: 212 KRFISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLR 265
+++I D + I V D + A R
Sbjct: 77 LVNVTSIGMKGGKEEM----DLAFPKAFIDNASVAFDVVAMPVETPFIRYAQAR 126
>d1k82a3 g.39.1.8 (A:225-268) DNA repair protein MutM (Fpg)
{Escherichia coli [TaxId: 562]}
Length = 44
Score = 25.0 bits (55), Expect = 3.0
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 281 QLCVYNYKGGPCYRCIYPV 299
+L VY KG PC C P+
Sbjct: 8 ELQVYGRKGEPCRVCGTPI 26
>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter
vinelandii [TaxId: 354]}
Length = 136
Score = 27.2 bits (59), Expect = 3.0
Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 18/124 (14%)
Query: 408 RDEFLAR--RVAHTLLDVRSVDEFAMMSLNIASHATMADVQLMFAEAGECPAFLESLRED 465
RD L R + D RS E+ + A + A P+ +R D
Sbjct: 16 RDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRALRIRTD 75
Query: 466 I---------LAHRHVFVICRRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQK 516
I + + C+ + S + K G ++ + W
Sbjct: 76 IAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKAL------G-YPRVKGYAGSWGEWGN 128
Query: 517 YVDN 520
+ D
Sbjct: 129 HPDT 132
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 209
Score = 27.6 bits (61), Expect = 3.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 151 LNASVLIVGCGGTGSPCIQYLAASGV 176
A + +VGCGG G+ I L G+
Sbjct: 14 TKAKITVVGCGGAGNNTITRLKMEGI 39
>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 142
Score = 27.0 bits (59), Expect = 3.6
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
Query: 155 VLIVGCGGTGSPCIQYLAASG-VGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKR 213
+ VG G GS + V + L D + H I +
Sbjct: 3 LGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGA 62
Query: 214 FISAINRNTIV 224
S + + I+
Sbjct: 63 DYSLLKGSEII 73
>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo
sapiens), heart isoform (H chain) [TaxId: 9606]}
Length = 160
Score = 26.9 bits (59), Expect = 3.6
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Query: 155 VLIVGCGGTGSPCIQYLAASGVGT-LGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKR 213
+ +VG G G C + + L L D +L + H + + PK+ + K
Sbjct: 23 ITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD 82
Query: 214 FISAINRNTIVHAYQ 228
+ N +V
Sbjct: 83 YSVTANSKIVVVTAG 97
>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid
dehydrogenase (DAPDH) {Corynebacterium glutamicum
[TaxId: 1718]}
Length = 170
Score = 27.2 bits (59), Expect = 3.9
Identities = 15/143 (10%), Positives = 32/143 (22%), Gaps = 12/143 (8%)
Query: 155 VLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRF 214
V IVG G G + +A ++L + + V +
Sbjct: 6 VAIVGYGNLGRSVEKLIAKQ----------PDMDLVGIFSRRATLDTKTPVFDVADVDKH 55
Query: 215 ISAINRNTIVHAYQTLLDTSNACDIIRRYDVVVDACDNAPTRYLLNDACLREGRPLVSAS 274
++ + T + ++ VD DN + +
Sbjct: 56 ADDVDVLFLCMGSATDIPE--QAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVA 113
Query: 275 ALGLEGQLCVYNYKGGPCYRCIY 297
+ R +
Sbjct: 114 LVSTGRNPDFTASSQIAFGRAAH 136
>d1r8ia_ a.8.7.1 (A:) Typo IV secretion system protein TraC
{Escherichia coli [TaxId: 562]}
Length = 187
Score = 26.8 bits (59), Expect = 4.6
Identities = 6/30 (20%), Positives = 16/30 (53%)
Query: 5 EAVRKVAQLKEKIRQLKEDLTNAETELETI 34
+ ++ Q+ +++ QLK L + E++
Sbjct: 5 KQGEQLEQMAQQLEQLKSQLETQKNMYESM 34
>d1n46a_ a.123.1.1 (A:) Thyroid hormone receptor beta (TR-beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 27.3 bits (60), Expect = 4.6
Identities = 15/114 (13%), Positives = 38/114 (33%), Gaps = 5/114 (4%)
Query: 380 VFCSSRANDKTPDISILDPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASH 439
++ D + L+ +T ++ L + +L+
Sbjct: 104 SLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIF---DLGMSLSSFNLDDTEV 160
Query: 440 ATMADVQLMFAEAG--ECPAFLESLREDILAHRHVFVICRRGNDSQKVVQLLKR 491
A + V LM ++ C +E ++ L ++ R+ + + +LL +
Sbjct: 161 ALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMK 214
>d2o8ia1 a.288.1.1 (A:1-165) Hypothetical protein Atu2327
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 165
Score = 26.8 bits (59), Expect = 4.7
Identities = 9/65 (13%), Positives = 18/65 (27%)
Query: 433 SLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRRGNDSQKVVQLLKRY 492
L S A L E F + F+I +G + ++
Sbjct: 75 ELTADSRNEQAGAGLDRLSPQEHARFTQLNSAYTEKFGFPFIIAVKGLNRHDILSAFDTR 134
Query: 493 VERHR 497
++ +
Sbjct: 135 IDNNA 139
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 198
Score = 26.8 bits (59), Expect = 5.0
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 153 ASVLIVGCGGTGSPCIQYLAASGV 176
A + ++G GG G + ++A + V
Sbjct: 2 AVIKVIGVGGGGGNAVNHMAKNNV 25
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor
DnaA C-terminal domain IV {Escherichia coli [TaxId:
562]}
Length = 94
Score = 25.5 bits (56), Expect = 5.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 6 AVRKVAQLKEKIRQLKEDLTNAETELET 33
A RK+ QL+E+ +KED +N L +
Sbjct: 67 ACRKIEQLREESHDIKEDFSNLIRTLSS 94
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 148
Score = 26.6 bits (58), Expect = 5.5
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 155 VLIVGCGGTGSPCIQYLAASGVGT 178
V+++G G G+ + L G+
Sbjct: 9 VVVIGAGFVGASYVFALMNQGIAD 32
>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium
longum, strain am101-2 [TaxId: 216816]}
Length = 143
Score = 26.5 bits (58), Expect = 5.6
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 155 VLIVGCGGTGSPCIQYLAASGVGT 178
+ ++G G GS A G+
Sbjct: 4 LAVIGAGAVGSTLAFAAAQRGIAR 27
>d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE
{Escherichia coli [TaxId: 562]}
Length = 124
Score = 26.2 bits (57), Expect = 6.1
Identities = 11/75 (14%), Positives = 24/75 (32%)
Query: 432 MSLNIASHATMADVQLMFAEAGECPAFLESLREDILAHRHVFVICRRGNDSQKVVQLLKR 491
+++N + A E P + + E++ A D + V +
Sbjct: 10 LAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLRDYVMQVID 69
Query: 492 YVERHRPGVVYDIRN 506
+ ++ DIR
Sbjct: 70 ATAENISSMLQDIRA 84
>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus
pentosus [TaxId: 1589]}
Length = 146
Score = 26.1 bits (57), Expect = 6.3
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 155 VLIVGCGGTGSPCIQYLAASGVGT 178
V++VG G GS +A G+
Sbjct: 8 VVLVGDGAVGSSYAFAMAQQGIAE 31
>d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 133
Score = 26.1 bits (57), Expect = 6.5
Identities = 7/50 (14%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 474 VICRRGNDSQKVVQLLKRYVERHRPGVVYDIRNIKEGYKGWQKYVDNRIP 523
+CRR + + ++++ V + + Y G+ + +D +
Sbjct: 19 YLCRRPDSTWHSAEVIQSRVNDQEGREEFYVH-----YVGFNRRLDEWVD 63
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 198
Score = 26.4 bits (58), Expect = 7.4
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 153 ASVLIVGCGGTGSPCIQYLAASGV 176
A + +VG GG G + + G+
Sbjct: 2 AVIKVVGIGGGGVNAVNRMIEQGL 25
>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase,
L-HICDH {Lactobacillus confusus [TaxId: 1583]}
Length = 146
Score = 25.8 bits (56), Expect = 7.6
Identities = 10/70 (14%), Positives = 19/70 (27%)
Query: 155 VLIVGCGGTGSPCIQYLAASGVGTLGLADYDRVELSNLHRQVIHTTHTIGQPKVTSAKRF 214
+ I+G G G+ L A GV + + +
Sbjct: 4 IGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND 63
Query: 215 ISAINRNTIV 224
+A+ +V
Sbjct: 64 WAALADADVV 73
>d1pk5a_ a.123.1.1 (A:) Orphan nuclear receptor NR5a2 (LRH-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 242
Score = 26.5 bits (58), Expect = 8.0
Identities = 13/114 (11%), Positives = 36/114 (31%), Gaps = 4/114 (3%)
Query: 380 VFCSSRANDKTPDISILDPTEHLTALDYRDEFLARRVAHTLLDVRSVDEFAMMSLNIASH 439
++ + + + + E + ++ V + +
Sbjct: 93 IYRQVAHGKEGTIFLVTGEHVDYSTIISHTEVAFNNLLSLAQEL--VVRLRSLQFDQREF 150
Query: 440 ATMADVQLMFAEAG--ECPAFLESLREDILAHRHVFVICRRGNDSQKVVQLLKR 491
+ + L ++ E +E ++E + A + +C ++K QLL R
Sbjct: 151 VCLKFLVLFSSDVKNLENLQLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLR 204
>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 311
Score = 26.4 bits (57), Expect = 8.6
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 11/68 (16%)
Query: 112 EDDCVWYGEVY-SKFSKDITERYSRQILLDQVGVMGQEKLLNASVLIVGCGGTGSPCIQY 170
+ + + S S+ +T RY + + +K + V+IVG G +G
Sbjct: 19 DWSDFKFAPIRESTVSRAMTSRYFKDL----------DKFAVSDVIIVGAGSSGLSAAYV 68
Query: 171 LAASGVGT 178
+A +
Sbjct: 69 IAKNRPDL 76
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.399
Gapped
Lambda K H
0.267 0.0583 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,934,508
Number of extensions: 91569
Number of successful extensions: 434
Number of sequences better than 10.0: 1
Number of HSP's gapped: 424
Number of HSP's successfully gapped: 54
Length of query: 525
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 436
Effective length of database: 1,185,626
Effective search space: 516932936
Effective search space used: 516932936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.3 bits)