RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13375
(204 letters)
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 136 bits (345), Expect = 2e-37
Identities = 30/66 (45%), Positives = 44/66 (66%)
Query: 16 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 75
SFEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+E + G+L
Sbjct: 463 SFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGIL 522
Query: 76 CVLDDQ 81
+LD++
Sbjct: 523 DILDEE 528
Score = 28.4 bits (64), Expect = 1.8
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 156 LVEGKPNGLLCVLDDQ 171
L+E + G+L +LD++
Sbjct: 513 LIEARLVGILDILDEE 528
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 135 bits (342), Expect = 4e-37
Identities = 32/66 (48%), Positives = 45/66 (68%)
Query: 16 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 75
SFEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP GL+
Sbjct: 397 SFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLI 456
Query: 76 CVLDDQ 81
+LD+
Sbjct: 457 SLLDEA 462
Score = 27.9 bits (63), Expect = 2.4
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 156 LVEGKPNGLLCVLDDQ 171
L+E KP GL+ +LD+
Sbjct: 447 LIEKKPIGLISLLDEA 462
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 135 bits (341), Expect = 6e-37
Identities = 38/66 (57%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 16 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 75
SFEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 448 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVL 506
Query: 76 CVLDDQ 81
+LD++
Sbjct: 507 DLLDEE 512
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 130 bits (329), Expect = 2e-35
Identities = 38/66 (57%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 16 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 75
SFEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 448 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVL 506
Query: 76 CVLDDQ 81
+LD++
Sbjct: 507 DLLDEE 512
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 127 bits (322), Expect = 2e-34
Identities = 37/68 (54%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
Query: 16 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNG 73
SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G
Sbjct: 465 SFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPG 524
Query: 74 LLCVLDDQ 81
+L +LD+Q
Sbjct: 525 ILALLDEQ 532
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 127 bits (321), Expect = 2e-34
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 16 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KPN 72
SFEQLCINY NE LQ FN +F EQEEY +EGI W ++F D C+ L+E P
Sbjct: 444 SFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPP 503
Query: 73 GLLCVLDDQ 81
GLL +LD++
Sbjct: 504 GLLALLDEE 512
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 126 bits (317), Expect = 8e-34
Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 16 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK--PN 72
SFEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E P
Sbjct: 475 SFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPP 534
Query: 73 GLLCVLDDQ 81
G+L +LD++
Sbjct: 535 GVLALLDEE 543
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 125 bits (315), Expect = 2e-33
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 11 IVDRGSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG 69
I SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G
Sbjct: 460 IFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDG 519
Query: 70 K-PNGLLCVLDDQ 81
+ P G+L +LD+Q
Sbjct: 520 RQPPGILALLDEQ 532
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 124 bits (313), Expect = 4e-33
Identities = 38/67 (56%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
Query: 16 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGL 74
SFEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+ L+E KP G+
Sbjct: 471 SFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGI 529
Query: 75 LCVLDDQ 81
L +L+++
Sbjct: 530 LSILEEE 536
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 123 bits (312), Expect = 4e-33
Identities = 38/72 (52%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
Query: 11 IVDRGSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG 69
I D SFEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F D C+ L+E
Sbjct: 467 IFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIE- 525
Query: 70 KPNGLLCVLDDQ 81
KP G++ +L+++
Sbjct: 526 KPMGIMSILEEE 537
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.030
Identities = 24/138 (17%), Positives = 35/138 (25%), Gaps = 26/138 (18%)
Query: 27 EHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSR 86
E LQ Q + + I+ R L + N LL VL + N
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLNVQNAKA 258
Query: 87 GNPM-VSC----------VFWMIKPTGRG----ETQWSPLVEGKPNGLL-----CVLDD- 125
N +SC V + + L + LL C D
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 126 --QANWSRGNPMVSCVFW 141
+ NP +
Sbjct: 319 PREV--LTTNPRRLSIIA 334
Score = 30.6 bits (68), Expect = 0.35
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 15/94 (15%)
Query: 94 VFWM-IKPTGRGETQWSPLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPTGRGETQ 152
+FW+ +K ET L + L D SR + + + + +
Sbjct: 184 IFWLNLKNCNSPETVLEMLQK------LLYQIDPNWTSRSDHSSN----IKLRIHSIQAE 233
Query: 153 WSPLVEGK--PNGLLCVLDDQANWSRGNPM-VSC 183
L++ K N LL VL + N N +SC
Sbjct: 234 LRRLLKSKPYENCLL-VLLNVQNAKAWNAFNLSC 266
>2arz_A Hypothetical protein PA4388; hypothetical protein,structural
genomics,MCSG, PSI, protein structure initiative; 2.00A
{Pseudomonas aeruginosa} SCOP: b.45.1.1
Length = 247
Score = 30.0 bits (66), Expect = 0.43
Identities = 12/98 (12%), Positives = 29/98 (29%), Gaps = 9/98 (9%)
Query: 62 LCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPTGRGETQWSPL------VEGK 115
+L+ + +L + G P S V + + GR S + ++
Sbjct: 11 NARELLLKEYRAVLSTHSKKWP---GFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQAD 67
Query: 116 PNGLLCVLDDQANWSRGNPMVSCVFWMIKPTGRGETQW 153
P + V + A + ++ + +
Sbjct: 68 PRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAA 105
Score = 28.9 bits (63), Expect = 0.98
Identities = 12/94 (12%), Positives = 28/94 (29%), Gaps = 9/94 (9%)
Query: 111 LVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPTGRGETQWSPL------VEGKPNGL 164
L+ + +L + G P S V + + GR S + ++ P
Sbjct: 15 LLLKEYRAVLSTHSKKWP---GFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCS 71
Query: 165 LCVLDDQANWSRGNPMVSCVFWMIKPTGRGETQW 198
+ V + A + ++ + +
Sbjct: 72 MLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAA 105
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB,
N-acetylglucosamine, beta- propeller, sugar binding
protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP:
b.67.1.1 PDB: 3kif_A* 3kih_A*
Length = 236
Score = 29.8 bits (66), Expect = 0.57
Identities = 27/138 (19%), Positives = 46/138 (33%), Gaps = 4/138 (2%)
Query: 65 QLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPTGRGETQWSPL--VEGKPNGLLCV 122
Q + PNG L + + P W+ + T G WS + PNG L
Sbjct: 91 QFLFFDPNGYLYAVSKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYA 150
Query: 123 LDDQANWSRGNPMVSCVFWMIKPTGRGETQWSPL--VEGKPNGLLCVLDDQANWSRGNPM 180
+ Q + P+ + W+ + T G+ W + G L + + P
Sbjct: 151 VHGQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQGGKFYEDYPPS 210
Query: 181 VSCVFWMIKPTGRGETQW 198
+ W+ + G W
Sbjct: 211 YAYDNWLARAKLIGNGGW 228
Score = 27.1 bits (59), Expect = 3.6
Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 2/100 (2%)
Query: 102 GRGETQWSPLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPTGRGETQWS--PLVEG 159
G+G + P G L + + + P WM + G W+ +
Sbjct: 36 GKGGWSNFKFLFLSPGGELYGVLNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFF 95
Query: 160 KPNGLLCVLDDQANWSRGNPMVSCVFWMIKPTGRGETQWS 199
PNG L + + P W+ + T G WS
Sbjct: 96 DPNGYLYAVSKDKLYKASPPQSDTDNWIARATEVGSGGWS 135
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 25.8 bits (56), Expect = 8.5
Identities = 9/56 (16%), Positives = 15/56 (26%), Gaps = 5/56 (8%)
Query: 6 SDLCGIVDRGSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNT 61
D + G + E +Y + Y + GI H +D
Sbjct: 62 KDTEELKSCGIQDIFVFCTRGELSKYRVP-----NLLDLYQQCGIITHHHPIADGG 112
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 25.6 bits (56), Expect = 8.5
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 26 NEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 59
E + + Y K G++ HI D
Sbjct: 36 PEDWEIEESWGDKDYYLSILKKNGLQPLHIPIPD 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.478
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,272,750
Number of extensions: 183560
Number of successful extensions: 359
Number of sequences better than 10.0: 1
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 22
Length of query: 204
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 115
Effective length of database: 4,216,824
Effective search space: 484934760
Effective search space used: 484934760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)