RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13375
(204 letters)
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 82.0 bits (202), Expect = 5e-19
Identities = 32/73 (43%), Positives = 47/73 (64%)
Query: 16 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 75
SFEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP GL+
Sbjct: 389 SFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLI 448
Query: 76 CVLDDQANWSRGN 88
+LD+ ++
Sbjct: 449 SLLDEACLIAKST 461
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 76.3 bits (187), Expect = 5e-17
Identities = 37/81 (45%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 11 IVDRGSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG 69
I + SFEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E
Sbjct: 392 IFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIER 451
Query: 70 --KPNGLLCVLDDQANWSRGN 88
P G+L +LD++ + +
Sbjct: 452 PTNPPGVLALLDEECWFPKAT 472
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 76.3 bits (187), Expect = 5e-17
Identities = 34/71 (47%), Positives = 45/71 (63%)
Query: 11 IVDRGSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK 70
I D SFEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F + + K
Sbjct: 420 IFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEK 479
Query: 71 PNGLLCVLDDQ 81
P G+ +L+++
Sbjct: 480 PMGIFSILEEE 490
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 75.9 bits (186), Expect = 8e-17
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 11 IVDRGSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK 70
I D SFEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F + + K
Sbjct: 418 IFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK 477
Query: 71 PNGLLCVLDDQANWSRGN 88
P G+L +L+++ + + +
Sbjct: 478 PMGILSILEEECMFPKAD 495
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 72.9 bits (178), Expect = 7e-16
Identities = 39/71 (54%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 11 IVDRGSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK 70
+ SFEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E K
Sbjct: 381 TFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK 440
Query: 71 PNGLLCVLDDQ 81
G+L +LD++
Sbjct: 441 -MGVLDLLDEE 450
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 69.7 bits (170), Expect = 9e-15
Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 16 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNG 73
SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G +P G
Sbjct: 418 SFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPG 477
Query: 74 LLCVLDDQANWSRGN 88
+L +LD+Q+ +
Sbjct: 478 ILALLDEQSVFPNAT 492
>d1xs5a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Treponema
pallidum [TaxId: 160]}
Length = 240
Score = 28.5 bits (63), Expect = 0.51
Identities = 20/154 (12%), Positives = 51/154 (33%), Gaps = 6/154 (3%)
Query: 37 VFQYEQEEYNKEGIRWRHIEFSDNTLCLQ-LVEGKPNGLLC----VLDDQANWSRGNPMV 91
+ + +EE K+ I R +EF++ + ++ G + +V
Sbjct: 17 LLEIAKEEVKKQHIELRIVEFTNYVALNEAVMRGDILMNFFQHVPHMQQFNQ-EHNGDLV 75
Query: 92 SCVFWMIKPTGRGETQWSPLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPTGRGET 151
S ++P + + + ++ + +D +N +R ++ ++ G G
Sbjct: 76 SVGNVHVEPLALYSRTYRHVSDFPAGAVIAIPNDSSNEARALRLLEAAGFIRMRAGSGLF 135
Query: 152 QWSPLVEGKPNGLLCVLDDQANWSRGNPMVSCVF 185
V+ ++ + A R V
Sbjct: 136 ATVEDVQQNVRNVVLQEVESALLPRVFDQVDGAV 169
>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab
(Tachypleus tridentatus) [TaxId: 6853]}
Length = 235
Score = 26.0 bits (57), Expect = 3.5
Identities = 29/134 (21%), Positives = 45/134 (33%), Gaps = 8/134 (5%)
Query: 71 PNGLLCVLDDQANWSRGNPMVSCVFWMIKPTGRGETQWS--PLVEGKPNGLL-CVLDDQA 127
PNG L + + P W+ + T G WS + PNG L V Q
Sbjct: 96 PNGYLYAVSKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVHGQQ- 154
Query: 128 NWSRGNPMVSC-VFWMIKPTGRGETQWSPL--VEGKPNGLLCVLDDQANWSRGNPMVSCV 184
+ + P VS W+ + T G+ W + G L + + P +
Sbjct: 155 -FYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQGGKFYEDYPPSYAYD 213
Query: 185 FWMIKPTGRGETQW 198
W+ + G W
Sbjct: 214 NWLARAKLIGNGGW 227
>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
Length = 476
Score = 25.6 bits (56), Expect = 5.4
Identities = 8/39 (20%), Positives = 10/39 (25%)
Query: 22 INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 60
I Y + Q F+ W H E D
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.478
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 848,654
Number of extensions: 39045
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 12
Length of query: 204
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,295,466
Effective search space: 159342318
Effective search space used: 159342318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)