BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13376
(417 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 78/160 (48%), Gaps = 11/160 (6%)
Query: 67 EKLQIYKLIKAVN-LRIKTLRKIENLWMMENLV---------ELDLSMNHIGVIENLDQL 116
E LQ + +KAV+ +R L + + +++EN V L L+ + V+ +L+QL
Sbjct: 403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQL 462
Query: 117 VCLEKLDLGYNRIEQIQ-GLDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQS 175
+ + LDL +NR+ + L N +E ++G+ +L +L+ + NR+Q
Sbjct: 463 LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQ 522
Query: 176 LASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQL 215
A++ L L LN++ N +C +E + M+P +
Sbjct: 523 SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 78/160 (48%), Gaps = 11/160 (6%)
Query: 67 EKLQIYKLIKAVN-LRIKTLRKIENLWMMENLV---------ELDLSMNHIGVIENLDQL 116
E LQ + +KAV+ +R L + + +++EN V L L+ + V+ +L+QL
Sbjct: 403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQL 462
Query: 117 VCLEKLDLGYNRIEQIQ-GLDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQS 175
+ + LDL +NR+ + L N +E ++G+ +L +L+ + NR+Q
Sbjct: 463 LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQ 522
Query: 176 LASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQL 215
A++ L L LN++ N +C +E + M+P +
Sbjct: 523 SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Query: 99 ELDLSMNHIGVIENLD-QLVCLEKLDLGYNRIEQIQGLDTXXXXXXXXXXMNRIETI-EG 156
ELDL I VIENL L + +D N I ++ G NRI I EG
Sbjct: 23 ELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEG 82
Query: 157 LDH-LEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQL 215
LD L L + N + L L L K L L I RNPV +K++ + I VPQ+
Sbjct: 83 LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQV 142
Query: 216 QCYNNHIILEDERRTA 231
+ + + ER+ A
Sbjct: 143 RVLDFQKVKLKERQEA 158
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 69 LQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLV-CLEKLDLGYN 127
L K K + L + KI +L MENL L L N I IENLD + LE+L + YN
Sbjct: 45 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN 104
Query: 128 RIEQIQGLDTXXXXXXXXXXMNRIET---IEGLDHLEKLELFNIAAN 171
+I + G++ N+I I+ L L+KLE +A N
Sbjct: 105 QIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 151
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 14/174 (8%)
Query: 66 AEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLG 125
AEK++++ +I + TL ++ L LS N+I I +L + L L LG
Sbjct: 26 AEKVELHGMIPPIEKMDATLS------TLKACKHLALSTNNIEKISSLSGMENLRILSLG 79
Query: 126 YNRIEQIQGLDTXX-XXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRR 184
N I++I+ LD N+I ++ G++ L L + ++ N+I + + L
Sbjct: 80 RNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAA 139
Query: 185 FKHLGRLNIERNPVCD--KEN--VDGFAIAMV---PQLQCYNNHIILEDERRTA 231
L L + NP+ + KEN + I +V P L+ + + DER A
Sbjct: 140 LDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQA 193
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 69 LQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLV-CLEKLDLGYN 127
L K K + L + KI +L MENL L L N I IENLD + LE+L + YN
Sbjct: 44 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN 103
Query: 128 RIEQIQGLDTXXXXXXXXXXMNRIET---IEGLDHLEKLELFNIAAN 171
+I + G++ N+I I+ L L+KLE +A N
Sbjct: 104 QIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 14/174 (8%)
Query: 66 AEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLG 125
AEK++++ +I + TL ++ L LS N+I I +L + L L LG
Sbjct: 25 AEKVELHGMIPPIEKMDATLS------TLKACKHLALSTNNIEKISSLSGMENLRILSLG 78
Query: 126 YNRIEQIQGLDTXX-XXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRR 184
N I++I+ LD N+I ++ G++ L L + ++ N+I + + L
Sbjct: 79 RNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAA 138
Query: 185 FKHLGRLNIERNPVCD--KEN--VDGFAIAMV---PQLQCYNNHIILEDERRTA 231
L L + NP+ + KEN + I +V P L+ + + DER A
Sbjct: 139 LDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQA 192
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXX 144
++ + + NL EL LS N I + L L LE+L + NR++ + G+ +
Sbjct: 53 IQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLF 112
Query: 145 XXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
N + + L HL+ LE+ +I N+++S+ L +L + + L
Sbjct: 113 LDN-NELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVL 155
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 37/92 (40%)
Query: 97 LVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIEG 156
L EL L N I I L L L L+L N++E I + N I I
Sbjct: 266 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 325
Query: 157 LDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
+ L KL+ A N++ ++SL L L
Sbjct: 326 VSSLTKLQRLFFANNKVSDVSSLANLTNINWL 357
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 1/127 (0%)
Query: 63 TNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKL 122
+NLA + KL + + L + I L + L L+L+ N + I + L L L
Sbjct: 255 SNLAPLSGLTKLTE-LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 313
Query: 123 DLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYL 182
L +N I I + + N++ + L +L + + N+I L L L
Sbjct: 314 TLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANL 373
Query: 183 RRFKHLG 189
R LG
Sbjct: 374 TRITQLG 380
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 82 IKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXX 141
I L K+ NL E+L+ + N I I L L L++L L N+++ I L +
Sbjct: 191 ISVLAKLTNL---ESLIATN---NQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNL 244
Query: 142 XXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
N+I + L L KL + AN+I +++ L L +L
Sbjct: 245 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 291
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 75 IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG 134
++A L IK++ +E + NL +++ S N + I L L L + + N+I I
Sbjct: 50 LQADRLGIKSIDGVE---YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP 106
Query: 135 LDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
L N+I I+ L +L L +++N I +++L L + L
Sbjct: 107 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 160
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 80 LRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXX 139
L T+ I L + +L +L N + ++ L L LE+LD+ N++ I L
Sbjct: 140 LSSNTISDISALSGLTSLQQLSFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 198
Query: 140 XXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
N+I I L L L+ ++ N+++ + +L L L
Sbjct: 199 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 247
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%)
Query: 80 LRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXX 139
L T+ I L + +L +L+ S N + ++ L L LE+LD+ N++ I L
Sbjct: 136 LSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 195
Query: 140 XXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
N+I I L L L+ ++ N+++ + +L L L
Sbjct: 196 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 244
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 81 RIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXX 140
++ L+ + NL +E LD+S N + I L +L LE L N+I I L
Sbjct: 162 QVTDLKPLANLTTLE---RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN 218
Query: 141 XXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
N+++ I L L L ++A N+I +LA L L + L
Sbjct: 219 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 266
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 36/92 (39%)
Query: 97 LVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIEG 156
L EL L N I I L L L L+L N++E I + N I I
Sbjct: 263 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 322
Query: 157 LDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
+ L KL+ N++ ++SL L L
Sbjct: 323 VSSLTKLQRLFFYNNKVSDVSSLANLTNINWL 354
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Query: 75 IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG 134
++A L IK++ +E + NL +++ S N + I L L L + + N+I I
Sbjct: 46 LQADRLGIKSIDGVE---YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP 102
Query: 135 LDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIE 194
L N+I I+ L +L L +++N I +++L L + +LN
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ---QLNFS 159
Query: 195 RNPVCD 200
N V D
Sbjct: 160 SNQVTD 165
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 1/127 (0%)
Query: 63 TNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKL 122
+NLA + KL + + L + I L + L L+L+ N + I + L L L
Sbjct: 252 SNLAPLSGLTKLTE-LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 310
Query: 123 DLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYL 182
L +N I I + + N++ + L +L + + N+I L L L
Sbjct: 311 TLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANL 370
Query: 183 RRFKHLG 189
R LG
Sbjct: 371 TRITQLG 377
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 82 IKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXX 141
I L K+ NL E+L+ + N I I L L L++L L N+++ I L +
Sbjct: 188 ISVLAKLTNL---ESLIATN---NQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNL 241
Query: 142 XXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
N+I + L L KL + AN+I +++ L L +L
Sbjct: 242 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 288
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 47/109 (43%)
Query: 80 LRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXX 139
L T+ I L + +L +L S N + ++ L L LE+LD+ N++ I L
Sbjct: 136 LSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 195
Query: 140 XXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
N+I I L L L+ ++ N+++ + +L L L
Sbjct: 196 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 244
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 37/92 (40%)
Query: 97 LVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIEG 156
L EL L N I I L L L L+L N++E I + N I I
Sbjct: 263 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 322
Query: 157 LDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
+ L KL+ + N++ ++SL L L
Sbjct: 323 VSSLTKLQRLFFSNNKVSDVSSLANLTNINWL 354
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 1/127 (0%)
Query: 63 TNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKL 122
+NLA + KL + + L + I L + L L+L+ N + I + L L L
Sbjct: 252 SNLAPLSGLTKLTE-LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 310
Query: 123 DLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYL 182
L +N I I + + N++ + L +L + + N+I L L L
Sbjct: 311 TLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANL 370
Query: 183 RRFKHLG 189
R LG
Sbjct: 371 TRITQLG 377
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 82 IKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXX 141
I L K+ NL E+L+ + N I I L L L++L L N+++ I L +
Sbjct: 188 ISVLAKLTNL---ESLIATN---NQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNL 241
Query: 142 XXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
N+I + L L KL + AN+I +++ L L +L
Sbjct: 242 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 288
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 75 IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG 134
++A L IK++ +E + NL +++ S N + I L L L + + N+I I
Sbjct: 46 LQADRLGIKSIDGVE---YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP 102
Query: 135 LDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
L N+I I+ L +L L +++N I +++L L + L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 156
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 47/109 (43%)
Query: 80 LRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXX 139
L T+ I L + +L +L S N + ++ L L LE+LD+ N++ I L
Sbjct: 136 LSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 195
Query: 140 XXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
N+I I L L L+ ++ N+++ + +L L L
Sbjct: 196 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 244
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 36/92 (39%)
Query: 97 LVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIEG 156
L EL L N I I L L L L+L N++E I + N I I
Sbjct: 263 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 322
Query: 157 LDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
+ L KL+ N++ ++SL L L
Sbjct: 323 VSSLTKLQRLFFYNNKVSDVSSLANLTNINWL 354
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 1/127 (0%)
Query: 63 TNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKL 122
+NLA + KL + + L + I L + L L+L+ N + I + L L L
Sbjct: 252 SNLAPLSGLTKLTE-LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 310
Query: 123 DLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYL 182
L +N I I + + N++ + L +L + + N+I L L L
Sbjct: 311 TLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANL 370
Query: 183 RRFKHLG 189
R LG
Sbjct: 371 TRITQLG 377
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 82 IKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXX 141
I L K+ NL E+L+ + N I I L L L++L L N+++ I L +
Sbjct: 188 ISVLAKLTNL---ESLIATN---NQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNL 241
Query: 142 XXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
N+I + L L KL + AN+I +++ L L +L
Sbjct: 242 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 288
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 75 IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG 134
++A L IK++ +E + NL +++ S N + I L L L + + N+I I
Sbjct: 46 LQADRLGIKSIDGVE---YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP 102
Query: 135 LDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
L N+I I+ L +L L +++N I +++L L + L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 156
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 37/92 (40%)
Query: 97 LVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIEG 156
L EL L N I I L L L L+L N++E I + N I I
Sbjct: 262 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 321
Query: 157 LDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
+ L KL+ + N++ ++SL L L
Sbjct: 322 VSSLTKLQRLFFSNNKVSDVSSLANLTNINWL 353
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 1/127 (0%)
Query: 63 TNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKL 122
+NLA + KL + + L + I L + L L+L+ N + I + L L L
Sbjct: 251 SNLAPLSGLTKLTE-LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 309
Query: 123 DLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYL 182
L +N I I + + N++ + L +L + + N+I L L L
Sbjct: 310 TLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANL 369
Query: 183 RRFKHLG 189
R LG
Sbjct: 370 TRITQLG 376
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 82 IKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXX 141
I L K+ NL E+L+ + N I I L L L++L L N+++ I L +
Sbjct: 187 ISVLAKLTNL---ESLIATN---NQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNL 240
Query: 142 XXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
N+I + L L KL + AN+I +++ L L +L
Sbjct: 241 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 287
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 75 IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG 134
++A L IK++ +E + NL +++ S N + I L L L + + N+I I
Sbjct: 46 LQADRLGIKSIDGVE---YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP 102
Query: 135 LDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
L N+I I+ L +L L +++N I +++L L + L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 156
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 80 LRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXX 139
L T+ I L + +L +L+ N + ++ L L LE+LD+ N++ I L
Sbjct: 136 LSSNTISDISALSGLTSLQQLNFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 194
Query: 140 XXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
N+I I L L L+ ++ N+++ + +L L L
Sbjct: 195 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 243
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 36/92 (39%)
Query: 97 LVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIEG 156
L EL L N I I L L L L+L N++E I + N I I
Sbjct: 267 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 326
Query: 157 LDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
+ L KL+ N++ ++SL L L
Sbjct: 327 VSSLTKLQRLFFYNNKVSDVSSLANLTNINWL 358
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 5/145 (3%)
Query: 63 TNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKL 122
+NLA + KL + + L + I L + L L+L+ N + I + L L L
Sbjct: 256 SNLAPLSGLTKLTE-LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 314
Query: 123 DLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYL 182
L +N I I + + N++ + L +L + + N+I L L L
Sbjct: 315 TLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANL 374
Query: 183 RRFKHLGRLN---IERNPVCDKENV 204
R LG LN PV K NV
Sbjct: 375 TRITQLG-LNDQAWTNAPVNYKANV 398
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 82 IKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXX 141
I L K+ NL E+L+ + N I I L L L++L L N+++ I L +
Sbjct: 192 ISVLAKLTNL---ESLIATN---NQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNL 245
Query: 142 XXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
N+I + L L KL + AN+I +++ L L +L
Sbjct: 246 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 292
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 75 IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG 134
++A L IK++ +E + NL +++ S N + I L L L + + N+I I
Sbjct: 51 LQADRLGIKSIDGVE---YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP 107
Query: 135 LDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
L N+I I+ L +L L +++N I +++L L + L
Sbjct: 108 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 161
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 80 LRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXX 139
L T+ I L + +L +L N + ++ L L LE+LD+ N++ I L
Sbjct: 141 LSSNTISDISALSGLTSLQQLSFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 199
Query: 140 XXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
N+I I L L L+ ++ N+++ + +L L L
Sbjct: 200 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 248
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 36/92 (39%)
Query: 97 LVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIEG 156
L EL L N I I L L L L+L N++E I + N I I
Sbjct: 262 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 321
Query: 157 LDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
+ L KL+ N++ ++SL L L
Sbjct: 322 VSSLTKLQRLFFYNNKVSDVSSLANLTNINWL 353
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 1/127 (0%)
Query: 63 TNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKL 122
+NLA + KL + + L + I L + L L+L+ N + I + L L L
Sbjct: 251 SNLAPLSGLTKLTE-LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 309
Query: 123 DLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYL 182
L +N I I + + N++ + L +L + + N+I L L L
Sbjct: 310 TLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANL 369
Query: 183 RRFKHLG 189
R LG
Sbjct: 370 TRITQLG 376
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 82 IKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXX 141
I L K+ NL E+L+ + N I I L L L++L L N+++ I L +
Sbjct: 187 ISVLAKLTNL---ESLIATN---NQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNL 240
Query: 142 XXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
N+I + L L KL + AN+I +++ L L +L
Sbjct: 241 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 287
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 75 IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG 134
++A L IK++ +E + NL +++ S N + I L L L + + N+I I
Sbjct: 46 LQADRLGIKSIDGVE---YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP 102
Query: 135 LDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
L N+I I+ L +L L +++N I +++L L + L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 156
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 80 LRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXX 139
L T+ I L + +L +L+ N + ++ L L LE+LD+ N++ I L
Sbjct: 136 LSSNTISDISALSGLTSLQQLNFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 194
Query: 140 XXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
N+I I L L L+ ++ N+++ + +L L L
Sbjct: 195 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 243
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 26/145 (17%)
Query: 75 IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIEQI 132
++ +NL + LR+I NL + L ELDLS NH+ I + L+ L+KL + ++I+ I
Sbjct: 187 LRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246
Query: 133 QGLDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLN 192
+ D+L+ L N+A N + L ++ HL R++
Sbjct: 247 ER--------------------NAFDNLQSLVEINLAHNNLTLLPHDLF-TPLHHLERIH 285
Query: 193 IERNPV---CDKENVDGFAIAMVPQ 214
+ NP CD + + M P
Sbjct: 286 LHHNPWNCNCDILWLSWWIKDMAPS 310
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 75 IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG 134
I A N IK+++ I+ + N+ +L L+ N + I+ L L L L L N+I+ +
Sbjct: 48 IIANNSDIKSVQGIQ---YLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS 104
Query: 135 LDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIE 194
L N I I GL HL +LE + N+I + L R L L++E
Sbjct: 105 LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI---TDITVLSRLTKLDTLSLE 161
Query: 195 RNPVCD 200
N + D
Sbjct: 162 DNQISD 167
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 33/79 (41%)
Query: 105 NHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIEGLDHLEKLE 164
N I I L L LE L LG N+I I L N+I I L L KL+
Sbjct: 119 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 178
Query: 165 LFNIAANRIQSLASLVYLR 183
++ N I L +L L+
Sbjct: 179 NLYLSKNHISDLRALAGLK 197
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 75 IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG 134
I A N IK+++ I+ + N+ +L L+ N + I+ L L L L L N+++ +
Sbjct: 51 IIANNSDIKSVQGIQ---YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS 107
Query: 135 LDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIE 194
L N I I GL HL +LE + N+I + L R L L++E
Sbjct: 108 LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI---TDITVLSRLTKLDTLSLE 164
Query: 195 RNPVCD 200
N + D
Sbjct: 165 DNQISD 170
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 33/79 (41%)
Query: 105 NHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIEGLDHLEKLE 164
N I I L L LE L LG N+I I L N+I I L L KL+
Sbjct: 122 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 181
Query: 165 LFNIAANRIQSLASLVYLR 183
++ N I L +L L+
Sbjct: 182 NLYLSKNHISDLRALAGLK 200
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Query: 86 RKIENLWMMENLV---ELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXX 142
+I +L ++NL EL+LS N + + + L ++ LDL +I + L
Sbjct: 79 NQITDLTPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 138
Query: 143 XXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
+N+I I L L L+ +I N++ L L L + L
Sbjct: 139 VLYLDLNQITNISPLAGLTNLQYLSIGNNQVNDLTPLANLSKLTTL 184
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%)
Query: 75 IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG 134
IK ++L + + L + NL L L +N I I L L L+ L +G N++ +
Sbjct: 115 IKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVNDLTP 174
Query: 135 LDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRF 185
L N+I I L L L ++ N+I ++ L L
Sbjct: 175 LANLSKLTTLRADDNKISDISPLASLPNLIEVHLKDNQISDVSPLANLSNL 225
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 3/135 (2%)
Query: 66 AEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLG 125
+ +Q + ++NL + I + + N+ +L L+ N + I+ L L L L L
Sbjct: 59 VQGIQYLPNLTSLNLSNNQITDISPIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLD 118
Query: 126 YNRIEQIQGLDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRF 185
N+++ + L N I I GL HL +LE + N+I + L R
Sbjct: 119 ENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI---TDITVLSRL 175
Query: 186 KHLGRLNIERNPVCD 200
L L++E N + D
Sbjct: 176 TKLDTLSLEDNQISD 190
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 33/81 (40%)
Query: 105 NHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIEGLDHLEKLE 164
N I I L L LE L LG N+I I L N+I I L L KL+
Sbjct: 142 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 201
Query: 165 LFNIAANRIQSLASLVYLRRF 185
++ N I L +L L+
Sbjct: 202 NLYLSKNHISDLRALAGLKNL 222
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 5/138 (3%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXX 144
++ ++ + + N+ +L L+ N + I+ L L L L L N+I+ + L
Sbjct: 76 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 135
Query: 145 XXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENV 204
N I I GL HL +LE + N+I + L R L L++E N + D +
Sbjct: 136 SLEHNGISDINGLVHLPQLESLYLGNNKI---TDITVLSRLTKLDTLSLEDNQISDIVPL 192
Query: 205 DGFAIAMVPQLQCYNNHI 222
G + + L NHI
Sbjct: 193 AG--LTKLQNLYLSKNHI 208
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 33/81 (40%)
Query: 105 NHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIEGLDHLEKLE 164
N I I L L LE L LG N+I I L N+I I L L KL+
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 199
Query: 165 LFNIAANRIQSLASLVYLRRF 185
++ N I L +L L+
Sbjct: 200 NLYLSKNHISDLRALAGLKNL 220
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 5/138 (3%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXX 144
++ ++ + + N+ +L L+ N + I+ L L L L L N+I+ + L
Sbjct: 76 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 135
Query: 145 XXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENV 204
N I I GL HL +LE + N+I + L R L L++E N + D +
Sbjct: 136 SLEHNGISDINGLVHLPQLESLYLGNNKI---TDITVLSRLTKLDTLSLEDNQISDIVPL 192
Query: 205 DGFAIAMVPQLQCYNNHI 222
G + + L NHI
Sbjct: 193 AG--LTKLQNLYLSKNHI 208
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 33/81 (40%)
Query: 105 NHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIEGLDHLEKLE 164
N I I L L LE L LG N+I I L N+I I L L KL+
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 199
Query: 165 LFNIAANRIQSLASLVYLRRF 185
++ N I L +L L+
Sbjct: 200 NLYLSKNHISDLRALAGLKNL 220
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 5/138 (3%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXX 144
++ ++ + + N+ +L L+ N + I+ L L L L L N+I+ + L
Sbjct: 76 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 135
Query: 145 XXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENV 204
N I I GL HL +LE + N+I + L R L L++E N + D +
Sbjct: 136 SLEHNGISDINGLVHLPQLESLYLGNNKI---TDITVLSRLTKLDTLSLEDNQISDIVPL 192
Query: 205 DGFAIAMVPQLQCYNNHI 222
G + + L NHI
Sbjct: 193 AG--LTKLQNLYLSKNHI 208
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 33/81 (40%)
Query: 105 NHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIEGLDHLEKLE 164
N I I L L LE L LG N+I I L N+I I L L KL+
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 199
Query: 165 LFNIAANRIQSLASLVYLRRF 185
++ N I L +L L+
Sbjct: 200 NLYLSKNHISDLRALAGLKNL 220
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 5/138 (3%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXX 144
++ ++ + + N+ +L L+ N + I+ L L L L L N+I+ + L
Sbjct: 53 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 112
Query: 145 XXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENV 204
N I I GL HL +LE + N+I + L R L L++E N + D +
Sbjct: 113 SLEHNGISDINGLVHLPQLESLYLGNNKI---TDITVLSRLTKLDTLSLEDNQISDIVPL 169
Query: 205 DGFAIAMVPQLQCYNNHI 222
G + + L NHI
Sbjct: 170 AG--LTKLQNLYLSKNHI 185
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 33/81 (40%)
Query: 105 NHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIEGLDHLEKLE 164
N I I L L LE L LG N+I I L N+I I L L KL+
Sbjct: 117 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 176
Query: 165 LFNIAANRIQSLASLVYLRRF 185
++ N I L +L L+
Sbjct: 177 NLYLSKNHISDLRALAGLKNL 197
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXX 144
++ ++ + + N+ +L L+ N + I+ L L L L L N+++ + L
Sbjct: 56 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 115
Query: 145 XXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCD 200
N I I GL HL +LE + N+I + L R L L++E N + D
Sbjct: 116 SLEHNGISDINGLVHLPQLESLYLGNNKI---TDITVLSRLTKLDTLSLEDNQISD 168
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 33/81 (40%)
Query: 105 NHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIEGLDHLEKLE 164
N I I L L LE L LG N+I I L N+I I L L KL+
Sbjct: 120 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 179
Query: 165 LFNIAANRIQSLASLVYLRRF 185
++ N I L +L L+
Sbjct: 180 NLYLSKNHISDLRALAGLKNL 200
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 75 IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG 134
I A N IK+++ I+ + N+ +L L+ N + I+ L L L L L N+++ +
Sbjct: 51 IIANNSDIKSVQGIQ---YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS 107
Query: 135 LDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIE 194
L N I I GL HL +LE + N+I + L R L L++E
Sbjct: 108 LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI---TDITVLSRLTKLDTLSLE 164
Query: 195 RNPVCD 200
N + D
Sbjct: 165 DNQISD 170
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 33/81 (40%)
Query: 105 NHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIEGLDHLEKLE 164
N I I L L LE L LG N+I I L N+I I L L KL+
Sbjct: 122 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 181
Query: 165 LFNIAANRIQSLASLVYLRRF 185
++ N I L +L L+
Sbjct: 182 NLYLSKNHISDLRALAGLKNL 202
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXX 144
++ ++ + + N+ +L L+ N + I+ L L L L L N+++ + L
Sbjct: 53 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 112
Query: 145 XXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCD 200
N I I GL HL +LE + N+I + L R L L++E N + D
Sbjct: 113 SLEHNGISDINGLVHLPQLESLYLGNNKI---TDITVLSRLTKLDTLSLEDNQISD 165
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 33/81 (40%)
Query: 105 NHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIEGLDHLEKLE 164
N I I L L LE L LG N+I I L N+I I L L KL+
Sbjct: 117 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLACLTKLQ 176
Query: 165 LFNIAANRIQSLASLVYLRRF 185
++ N I L +L L+
Sbjct: 177 NLYLSKNHISDLRALCGLKNL 197
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 3/106 (2%)
Query: 86 RKIENLWMMENLV---ELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXX 142
+I +L ++NL EL+LS N + + + L ++ LDL +I + L
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 143 XXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
+N+I I L L L+ +I ++ L L L + L
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTL 178
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXX 144
++ ++ + + N+ +L L+ N + I+ L L L L L N+++ + L
Sbjct: 56 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 115
Query: 145 XXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
N I I GL HL +LE + N+I + L R L L++E N
Sbjct: 116 SLEHNGISDINGLVHLPQLESLYLGNNKI---TDITVLSRLTKLDTLSLEDN 164
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 207 FAIAMVP--QLQCYNNHIILE--DERRTALEQHMYDVRTETLKDLMVQRERQNALASQRK 262
F IA+ P +L Y + +I + +R+T + H++ V ++++ RE Q+ L +
Sbjct: 119 FCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGES 178
Query: 263 SEEKSKA 269
K+++
Sbjct: 179 GAGKTES 185
>pdb|3GBV|A Chain A, Crystal Structure Of A Putative Laci Transcriptional
Regulator From Bacteroides Fragilis
pdb|3GBV|B Chain B, Crystal Structure Of A Putative Laci Transcriptional
Regulator From Bacteroides Fragilis
Length = 304
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 185 FKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYN------NHIILEDE 227
F +G +ERN C KE F IA P+LQ +N +H+I E
Sbjct: 226 FSLIGYDLLERNVTCLKEGTVSFLIAQQPELQGFNSIKTLCDHLIFRKE 274
>pdb|2LVS|A Chain A, Nmr Solution Structure Of A Crispr Repeat Binding Protein
Length = 105
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 317 DFLEVSSKLYEFGTSQHSLRQNEVDEFQAVYRAL-KLKSCHEAVKNKTRYRVHPMLYE 373
D L++ KLY+ G + + + VY+AL KL++ + K RYR H L E
Sbjct: 6 DSLDIVEKLYKDGVPVKEIAKRSNNSMSTVYKALEKLEAMGRIKRRKGRYRQHRRLTE 63
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 35/85 (41%)
Query: 104 MNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIEGLDHLEKL 163
+N I I + L L +G N+I + L N+I I + L KL
Sbjct: 208 VNQITDITPVANXTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKL 267
Query: 164 ELFNIAANRIQSLASLVYLRRFKHL 188
+ N+ +N+I ++ L L + L
Sbjct: 268 KXLNVGSNQISDISVLNNLSQLNSL 292
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 207 FAIAMVP--QLQCYNNHIILE--DERRTALEQHMYDVRTETLKDLMVQRERQNALASQRK 262
F IA+ P +L Y + +I + +R+T + H++ V ++++ RE Q+ L +
Sbjct: 119 FCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGES 178
Query: 263 SEEKS 267
K+
Sbjct: 179 GAGKT 183
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 207 FAIAMVP--QLQCYNNHIILE--DERRTALEQHMYDVRTETLKDLMVQRERQNALASQRK 262
F IA+ P +L Y + +I + +R+T + H++ V ++++ RE Q+ L +
Sbjct: 119 FCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGES 178
Query: 263 SEEKS 267
K+
Sbjct: 179 GAGKT 183
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 207 FAIAMVP--QLQCYNNHIILE--DERRTALEQHMYDVRTETLKDLMVQRERQNALASQRK 262
F IA+ P +L Y + +I + +R+T + H++ V ++++ RE Q+ L +
Sbjct: 119 FCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGES 178
Query: 263 SEEKS 267
K+
Sbjct: 179 GAGKT 183
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 207 FAIAMVP--QLQCYNNHIILE--DERRTALEQHMYDVRTETLKDLMVQRERQNALASQRK 262
F IA+ P +L Y + +I + +R+T + H++ V ++++ RE Q+ L +
Sbjct: 115 FCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGES 174
Query: 263 SEEKS 267
K+
Sbjct: 175 GAGKT 179
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 207 FAIAMVP--QLQCYNNHIILE--DERRTALEQHMYDVRTETLKDLMVQRERQNALASQRK 262
F IA+ P +L Y + +I + +R+T + H++ V ++++ RE Q+ L +
Sbjct: 114 FCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGES 173
Query: 263 SEEKS 267
K+
Sbjct: 174 GAGKT 178
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 58/147 (39%), Gaps = 17/147 (11%)
Query: 66 AEKLQIYKL-------IKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LD 114
E+L YK+ K ++L LR + + + L LDLS I IE+
Sbjct: 15 CEELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 74
Query: 115 QLVCLEKLDLGYNRIEQI-----QGLDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIA 169
L L L L N I+ + GL + + +E + HL+ L+ N+A
Sbjct: 75 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVA 133
Query: 170 ANRIQSLASLVYLRRFKHLGRLNIERN 196
N IQS Y +L L++ N
Sbjct: 134 HNLIQSFKLPEYFSNLTNLEHLDLSSN 160
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 207 FAIAMVP--QLQCYNNHIILE--DERRTALEQHMYDVRTETLKDLMVQRERQNALASQRK 262
F IA+ P +L Y + +I + +R+T + H++ V ++++ RE Q+ L +
Sbjct: 119 FCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGES 178
Query: 263 SEEKS 267
K+
Sbjct: 179 GAGKT 183
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 15/129 (11%)
Query: 75 IKAVNLRIKTLRKI--ENLWMMENLVELDLSMNHIGVIEN-----LDQLVCLEKLDLGYN 127
++ +NL L ++ N + + + +DL NHI +I++ L++L L+ D
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
Query: 128 RIEQIQGLDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKH 187
I I + + +I L HL + NR+++L L +L R H
Sbjct: 376 TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSE--------NRLENLDILYFLLRVPH 427
Query: 188 LGRLNIERN 196
L L + +N
Sbjct: 428 LQILILNQN 436
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 22/143 (15%)
Query: 75 IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG 134
++ +NL + L+ I NL + L EL+LS N + +I R QG
Sbjct: 158 LRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLI-----------------RPGSFQG 200
Query: 135 LDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIE 194
L + + IE D L+ LE N++ N + SL ++ L R+++
Sbjct: 201 LTSLRKLWLMHAQVATIER-NAFDDLKSLEELNLSHNNLMSLPHDLF-TPLHRLERVHLN 258
Query: 195 RNPV---CDKENVDGFAIAMVPQ 214
NP CD + + VP
Sbjct: 259 HNPWHCNCDVLWLSWWLKETVPS 281
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 22/143 (15%)
Query: 75 IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG 134
++ +NL + L+ I NL + L EL+LS N + +I R QG
Sbjct: 158 LRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLI-----------------RPGSFQG 200
Query: 135 LDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIE 194
L + + IE D L+ LE N++ N + SL ++ L R+++
Sbjct: 201 LTSLRKLWLMHAQVATIER-NAFDDLKSLEELNLSHNNLMSLPHDLF-TPLHRLERVHLN 258
Query: 195 RNPV---CDKENVDGFAIAMVPQ 214
NP CD + + VP
Sbjct: 259 HNPWHCNCDVLWLSWWLKETVPS 281
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,343,063
Number of Sequences: 62578
Number of extensions: 386256
Number of successful extensions: 1238
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1055
Number of HSP's gapped (non-prelim): 131
length of query: 417
length of database: 14,973,337
effective HSP length: 101
effective length of query: 316
effective length of database: 8,652,959
effective search space: 2734335044
effective search space used: 2734335044
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)