Query psy13376
Match_columns 417
No_of_seqs 583 out of 3205
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 17:53:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h6u_A Internalin H; cell adhe 99.8 2.2E-20 7.6E-25 180.1 13.8 160 57-224 67-228 (308)
2 4fmz_A Internalin; leucine ric 99.8 7.3E-20 2.5E-24 178.5 14.3 208 6-223 108-321 (347)
3 3rfs_A Internalin B, repeat mo 99.8 2.3E-19 7.8E-24 169.7 15.8 164 57-224 45-216 (272)
4 1h6t_A Internalin B; cell adhe 99.8 2.1E-20 7.3E-25 178.8 8.0 165 57-224 72-238 (291)
5 1xeu_A Internalin C; cellular 99.8 3E-20 1E-24 175.2 8.3 164 58-225 46-211 (263)
6 4fmz_A Internalin; leucine ric 99.8 1.8E-19 6.1E-24 175.7 13.3 235 5-253 85-324 (347)
7 1h6t_A Internalin B; cell adhe 99.8 2.2E-19 7.6E-24 171.7 12.8 160 57-224 50-211 (291)
8 1h6u_A Internalin H; cell adhe 99.8 4.1E-19 1.4E-23 171.2 13.8 163 56-226 44-208 (308)
9 1ozn_A Reticulon 4 receptor; N 99.8 4.1E-19 1.4E-23 168.7 13.4 164 57-224 60-236 (285)
10 3m19_A Variable lymphocyte rec 99.8 7.6E-19 2.6E-23 164.0 14.2 164 57-224 18-190 (251)
11 1p9a_G Platelet glycoprotein I 99.8 1.2E-18 3.9E-23 166.7 15.7 190 6-224 8-206 (290)
12 2o6q_A Variable lymphocyte rec 99.8 1.1E-18 3.8E-23 164.7 15.1 188 9-224 17-216 (270)
13 1a9n_A U2A', U2A'; complex (nu 99.8 1.2E-19 4.2E-24 160.3 7.5 151 87-237 11-164 (176)
14 1xeu_A Internalin C; cellular 99.8 5.5E-19 1.9E-23 166.5 12.0 157 59-224 25-183 (263)
15 1o6v_A Internalin A; bacterial 99.8 7.6E-19 2.6E-23 178.7 13.8 207 7-224 176-386 (466)
16 3rfs_A Internalin B, repeat mo 99.8 7.2E-19 2.5E-23 166.3 12.5 187 10-201 21-220 (272)
17 3zyj_A Leucine-rich repeat-con 99.8 4.9E-19 1.7E-23 178.8 11.3 209 8-224 64-290 (440)
18 2id5_A Lingo-1, leucine rich r 99.8 2.7E-23 9.1E-28 211.9 -20.4 163 57-223 36-210 (477)
19 3zyi_A Leucine-rich repeat-con 99.8 4.2E-19 1.4E-23 179.9 10.5 210 8-224 75-301 (452)
20 2o6q_A Variable lymphocyte rec 99.8 2.6E-18 8.9E-23 162.2 15.0 165 57-225 20-193 (270)
21 3o53_A Protein LRIM1, AGAP0063 99.8 2.7E-19 9.2E-24 173.0 8.4 230 6-248 32-270 (317)
22 2z66_A Variable lymphocyte rec 99.8 3E-19 1E-23 171.4 8.5 215 3-224 22-259 (306)
23 1m9s_A Internalin B; cell inva 99.8 3.3E-19 1.1E-23 187.1 9.6 210 10-223 23-234 (605)
24 3e6j_A Variable lymphocyte rec 99.8 2.1E-18 7.2E-23 159.1 13.5 165 58-223 24-200 (229)
25 1p9a_G Platelet glycoprotein I 99.8 1.4E-18 5E-23 166.0 12.4 165 57-225 14-184 (290)
26 1m9s_A Internalin B; cell inva 99.8 1.9E-18 6.4E-23 181.4 14.2 161 56-224 46-208 (605)
27 2id5_A Lingo-1, leucine rich r 99.8 9.1E-23 3.1E-27 208.0 -18.4 195 3-224 26-259 (477)
28 2z80_A TOLL-like receptor 2, v 99.8 1.1E-20 3.7E-25 185.4 -3.2 163 59-225 37-210 (353)
29 2xwt_C Thyrotropin receptor; s 99.8 2E-18 7E-23 159.7 11.9 190 3-223 26-236 (239)
30 3o53_A Protein LRIM1, AGAP0063 99.8 5E-20 1.7E-24 178.2 0.9 208 6-221 56-270 (317)
31 1o6v_A Internalin A; bacterial 99.8 2.4E-18 8.2E-23 175.0 12.7 208 6-224 110-342 (466)
32 4ezg_A Putative uncharacterize 99.8 4.2E-18 1.4E-22 153.1 12.7 145 72-224 43-192 (197)
33 4fcg_A Uncharacterized protein 99.7 6.8E-18 2.3E-22 164.1 13.8 162 59-224 110-288 (328)
34 3t6q_A CD180 antigen; protein- 99.7 4.6E-22 1.6E-26 208.5 -17.1 163 58-223 259-435 (606)
35 3oja_A Leucine-rich immune mol 99.7 1.3E-18 4.5E-23 178.2 9.0 230 5-247 31-269 (487)
36 4ezg_A Putative uncharacterize 99.7 6.3E-18 2.1E-22 152.0 12.2 142 56-200 47-195 (197)
37 3v47_A TOLL-like receptor 5B a 99.7 7.5E-22 2.6E-26 199.6 -16.3 141 61-201 18-169 (455)
38 2z80_A TOLL-like receptor 2, v 99.7 2.2E-18 7.5E-23 168.8 8.4 216 3-224 46-312 (353)
39 3t6q_A CD180 antigen; protein- 99.7 3.2E-21 1.1E-25 202.2 -13.2 212 9-224 255-487 (606)
40 1ozn_A Reticulon 4 receptor; N 99.7 1.2E-17 4.2E-22 158.5 12.8 165 57-225 36-213 (285)
41 3m19_A Variable lymphocyte rec 99.7 2E-17 7E-22 154.3 13.8 169 8-201 14-194 (251)
42 2v9t_B SLIT homolog 2 protein 99.7 1.2E-17 4.1E-22 153.1 11.9 145 58-203 16-169 (220)
43 3oja_A Leucine-rich immune mol 99.7 3.7E-19 1.3E-23 182.4 1.3 207 6-220 56-269 (487)
44 2ft3_A Biglycan; proteoglycan, 99.7 1.2E-17 4.1E-22 162.2 12.0 160 57-224 106-275 (332)
45 4fcg_A Uncharacterized protein 99.7 1.6E-17 5.4E-22 161.5 12.6 164 56-224 84-264 (328)
46 2z62_A TOLL-like receptor 4, v 99.7 3.5E-18 1.2E-22 161.6 7.8 195 2-224 21-235 (276)
47 1xku_A Decorin; proteoglycan, 99.7 1.5E-17 5.1E-22 161.3 12.3 208 8-224 52-274 (330)
48 3g06_A SSPH2 (leucine-rich rep 99.7 1.5E-17 5.2E-22 174.9 13.3 116 95-225 181-296 (622)
49 3o6n_A APL1; leucine-rich repe 99.7 7.5E-18 2.6E-22 167.2 9.9 209 7-224 44-306 (390)
50 2xwt_C Thyrotropin receptor; s 99.7 8.8E-18 3E-22 155.5 9.3 163 57-224 35-216 (239)
51 3zyj_A Leucine-rich repeat-con 99.7 2E-17 6.8E-22 167.0 12.7 164 57-224 92-266 (440)
52 3bz5_A Internalin-J, INLJ; leu 99.7 4.4E-17 1.5E-21 165.6 14.6 200 7-223 41-243 (457)
53 2v70_A SLIT-2, SLIT homolog 2 99.7 2.2E-17 7.4E-22 151.4 11.0 146 57-203 15-170 (220)
54 3zyi_A Leucine-rich repeat-con 99.7 3E-17 1E-21 166.3 13.0 164 57-224 103-277 (452)
55 2xot_A Amphoterin-induced prot 99.7 3.7E-17 1.3E-21 160.9 12.4 164 57-224 22-200 (361)
56 2o6s_A Variable lymphocyte rec 99.7 1.1E-16 3.7E-21 144.9 14.4 142 59-201 13-163 (208)
57 3v47_A TOLL-like receptor 5B a 99.7 2.2E-17 7.6E-22 166.7 10.8 108 113-224 295-406 (455)
58 1jl5_A Outer protein YOPM; leu 99.7 9.1E-17 3.1E-21 163.1 15.0 137 57-202 135-273 (454)
59 3o6n_A APL1; leucine-rich repe 99.7 3.6E-17 1.2E-21 162.2 11.6 206 7-224 92-350 (390)
60 1xku_A Decorin; proteoglycan, 99.7 6.5E-17 2.2E-21 156.7 11.7 213 6-224 74-304 (330)
61 2z66_A Variable lymphocyte rec 99.7 2.5E-17 8.5E-22 157.9 8.6 166 56-225 55-235 (306)
62 1dce_A Protein (RAB geranylger 99.7 1.9E-18 6.3E-23 180.2 0.6 201 6-220 347-567 (567)
63 1jl5_A Outer protein YOPM; leu 99.7 1.3E-16 4.4E-21 162.0 14.1 141 56-203 114-254 (454)
64 2v9t_B SLIT homolog 2 protein 99.7 1.6E-16 5.4E-21 145.6 13.2 143 76-224 14-163 (220)
65 3oja_B Anopheles plasmodium-re 99.7 3.3E-17 1.1E-21 171.9 9.7 74 58-131 104-185 (597)
66 3oja_B Anopheles plasmodium-re 99.7 3.3E-17 1.1E-21 171.9 9.5 207 7-224 74-356 (597)
67 3bz5_A Internalin-J, INLJ; leu 99.7 1.8E-16 6.1E-21 161.1 14.1 186 6-203 62-250 (457)
68 1ds9_A Outer arm dynein; leuci 99.7 3.8E-19 1.3E-23 160.2 -5.0 157 75-231 25-192 (198)
69 1wwl_A Monocyte differentiatio 99.7 4.2E-17 1.4E-21 157.2 8.5 159 57-224 125-307 (312)
70 2ft3_A Biglycan; proteoglycan, 99.7 7.9E-17 2.7E-21 156.4 10.4 166 55-224 125-305 (332)
71 2ell_A Acidic leucine-rich nuc 99.7 1.3E-16 4.5E-21 139.3 10.8 132 72-203 23-164 (168)
72 2ell_A Acidic leucine-rich nuc 99.7 1.7E-16 5.7E-21 138.7 11.1 134 93-226 22-160 (168)
73 3e6j_A Variable lymphocyte rec 99.7 4.3E-16 1.5E-20 143.5 14.3 144 75-224 21-170 (229)
74 4g8a_A TOLL-like receptor 4; l 99.7 1.3E-16 4.6E-21 166.8 12.1 144 60-203 38-190 (635)
75 4glp_A Monocyte differentiatio 99.7 1.2E-16 4.1E-21 153.8 10.6 160 56-224 120-305 (310)
76 2z62_A TOLL-like receptor 4, v 99.7 2.9E-16 9.8E-21 148.3 13.0 160 64-223 18-187 (276)
77 2je0_A Acidic leucine-rich nuc 99.7 1E-16 3.6E-21 137.2 9.0 128 94-221 16-148 (149)
78 2v70_A SLIT-2, SLIT homolog 2 99.7 3.2E-16 1.1E-20 143.5 12.3 144 76-224 14-164 (220)
79 3cvr_A Invasion plasmid antige 99.7 3.8E-16 1.3E-20 162.5 14.3 153 57-226 84-243 (571)
80 4eco_A Uncharacterized protein 99.7 1.4E-16 4.9E-21 168.4 11.3 207 8-223 305-546 (636)
81 1ziw_A TOLL-like receptor 3; i 99.7 2.6E-16 9E-21 167.0 12.5 128 91-222 476-618 (680)
82 2o6s_A Variable lymphocyte rec 99.7 1.2E-15 4.1E-20 138.0 14.9 144 76-224 10-159 (208)
83 3g06_A SSPH2 (leucine-rich rep 99.7 3.4E-16 1.2E-20 164.6 12.8 134 59-202 167-300 (622)
84 2z81_A CD282 antigen, TOLL-lik 99.7 8.2E-16 2.8E-20 158.9 15.1 159 57-224 338-508 (549)
85 3vq2_A TLR4, TOLL-like recepto 99.7 4.7E-17 1.6E-21 170.4 5.6 164 57-224 354-532 (606)
86 1ogq_A PGIP-2, polygalacturona 99.6 9.5E-17 3.3E-21 154.9 6.9 206 8-224 50-279 (313)
87 4eco_A Uncharacterized protein 99.6 1.8E-16 6E-21 167.7 9.5 212 6-225 328-578 (636)
88 1ziw_A TOLL-like receptor 3; i 99.6 3.2E-16 1.1E-20 166.3 11.4 212 7-224 328-595 (680)
89 3j0a_A TOLL-like receptor 5; m 99.6 1.4E-17 4.9E-22 181.5 0.2 146 72-224 313-462 (844)
90 1a9n_A U2A', U2A'; complex (nu 99.6 1.6E-16 5.6E-21 140.1 7.0 129 72-200 18-154 (176)
91 4ecn_A Leucine-rich repeat pro 99.6 7.1E-16 2.4E-20 167.7 12.6 159 59-223 579-786 (876)
92 2z81_A CD282 antigen, TOLL-lik 99.6 1.4E-15 4.9E-20 157.1 13.4 191 8-203 310-514 (549)
93 4ecn_A Leucine-rich repeat pro 99.6 1E-15 3.5E-20 166.4 12.3 129 74-203 549-714 (876)
94 3vq2_A TLR4, TOLL-like recepto 99.6 1.7E-15 5.8E-20 158.6 13.3 163 57-224 36-215 (606)
95 1wwl_A Monocyte differentiatio 99.6 5.4E-16 1.9E-20 149.4 8.5 151 72-224 94-264 (312)
96 2je0_A Acidic leucine-rich nuc 99.6 7.8E-16 2.7E-20 131.7 8.3 124 72-195 16-149 (149)
97 3cvr_A Invasion plasmid antige 99.6 3.5E-15 1.2E-19 155.2 14.0 179 9-202 60-246 (571)
98 2wfh_A SLIT homolog 2 protein 99.6 3.2E-15 1.1E-19 134.1 11.8 126 76-203 13-143 (193)
99 2z63_A TOLL-like receptor 4, v 99.6 1.7E-15 6E-20 156.9 10.6 130 72-201 27-164 (570)
100 2z63_A TOLL-like receptor 4, v 99.6 4.1E-16 1.4E-20 161.7 5.7 164 57-224 351-529 (570)
101 1w8a_A SLIT protein; signaling 99.6 5.1E-15 1.7E-19 132.5 12.1 125 76-203 11-143 (192)
102 2xot_A Amphoterin-induced prot 99.6 5.1E-15 1.8E-19 145.6 13.1 149 75-225 20-175 (361)
103 3rgz_A Protein brassinosteroid 99.6 1.5E-15 5E-20 163.9 9.5 81 72-152 465-551 (768)
104 2z7x_B TOLL-like receptor 1, v 99.6 4.5E-15 1.5E-19 152.5 11.8 162 58-224 307-479 (520)
105 4glp_A Monocyte differentiatio 99.6 2E-15 6.8E-20 145.2 8.5 130 72-201 90-239 (310)
106 4g8a_A TOLL-like receptor 4; l 99.6 1.6E-15 5.4E-20 158.6 7.9 148 56-203 55-218 (635)
107 2o6r_A Variable lymphocyte rec 99.6 1.9E-14 6.6E-19 126.7 13.5 127 75-203 9-141 (177)
108 1ogq_A PGIP-2, polygalacturona 99.6 1.4E-15 4.7E-20 146.7 5.9 164 56-224 53-232 (313)
109 3rgz_A Protein brassinosteroid 99.6 5.5E-15 1.9E-19 159.5 10.3 101 72-172 441-549 (768)
110 3j0a_A TOLL-like receptor 5; m 99.6 1.2E-14 4E-19 158.5 12.5 145 59-203 10-165 (844)
111 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.7E-14 5.9E-19 149.9 13.2 162 57-224 335-508 (562)
112 2wfh_A SLIT homolog 2 protein 99.5 3.4E-14 1.2E-18 127.4 11.4 120 57-176 14-141 (193)
113 2z7x_B TOLL-like receptor 1, v 99.5 1E-14 3.5E-19 149.9 8.3 137 57-198 4-150 (520)
114 2ca6_A RAN GTPase-activating p 99.5 6.8E-15 2.3E-19 145.7 4.5 165 57-224 98-314 (386)
115 4ay9_X Follicle-stimulating ho 99.5 3.7E-14 1.3E-18 138.8 9.6 173 3-178 24-219 (350)
116 1w8a_A SLIT protein; signaling 99.5 8.7E-14 3E-18 124.4 11.2 122 57-178 12-143 (192)
117 1z7x_W Ribonuclease inhibitor; 99.5 5.1E-16 1.7E-20 156.8 -4.0 151 74-224 86-267 (461)
118 2o6r_A Variable lymphocyte rec 99.5 1.4E-13 4.6E-18 121.2 12.0 121 57-177 11-140 (177)
119 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 7.7E-14 2.6E-18 145.0 12.2 144 56-202 34-187 (562)
120 2ca6_A RAN GTPase-activating p 99.5 7.6E-15 2.6E-19 145.3 3.4 165 56-221 125-338 (386)
121 1dce_A Protein (RAB geranylger 99.5 6.7E-14 2.3E-18 145.8 10.5 122 72-193 440-567 (567)
122 1ds9_A Outer arm dynein; leuci 99.5 1.3E-15 4.5E-20 136.8 -2.8 139 63-203 35-189 (198)
123 1z7x_W Ribonuclease inhibitor; 99.5 1.2E-15 4.1E-20 154.1 -4.0 143 58-200 8-184 (461)
124 3goz_A Leucine-rich repeat-con 99.5 2.8E-15 9.7E-20 147.3 -2.5 166 60-225 5-208 (362)
125 4b8c_D Glucose-repressible alc 99.4 5.1E-14 1.7E-18 150.9 5.2 107 72-178 223-333 (727)
126 3goz_A Leucine-rich repeat-con 99.4 9E-14 3.1E-18 136.6 6.0 201 8-224 22-264 (362)
127 4ay9_X Follicle-stimulating ho 99.4 6E-13 2.1E-17 130.1 9.9 160 60-224 16-213 (350)
128 2r9u_A Variable lymphocyte rec 99.4 1.5E-12 5.1E-17 114.7 11.1 102 98-202 15-121 (174)
129 4b8c_D Glucose-repressible alc 99.4 3.4E-13 1.2E-17 144.5 8.1 111 91-203 220-333 (727)
130 3g39_A Variable lymphocyte rec 99.4 1.6E-12 5.3E-17 114.0 10.9 103 97-202 11-118 (170)
131 2ast_B S-phase kinase-associat 99.4 9E-14 3.1E-18 134.5 2.1 164 57-223 97-282 (336)
132 2r9u_A Variable lymphocyte rec 99.4 2.7E-12 9.2E-17 113.0 10.9 101 75-177 14-121 (174)
133 2ast_B S-phase kinase-associat 99.3 8.1E-14 2.8E-18 134.8 0.1 150 72-224 92-258 (336)
134 3g39_A Variable lymphocyte rec 99.3 4.2E-12 1.4E-16 111.2 11.0 101 75-177 11-118 (170)
135 3sb4_A Hypothetical leucine ri 99.2 6.6E-12 2.2E-16 121.6 7.3 98 116-219 225-327 (329)
136 2ifg_A High affinity nerve gro 99.2 2.8E-11 9.6E-16 117.7 8.5 105 77-182 12-124 (347)
137 3sb4_A Hypothetical leucine ri 99.2 2.4E-11 8.3E-16 117.6 7.3 79 138-222 225-306 (329)
138 2ifg_A High affinity nerve gro 99.1 9.6E-11 3.3E-15 113.9 9.1 104 98-203 11-120 (347)
139 3un9_A NLR family member X1; l 99.1 3.3E-12 1.1E-16 126.1 -3.9 153 72-224 71-250 (372)
140 3un9_A NLR family member X1; l 99.0 3.5E-11 1.2E-15 118.8 0.3 147 56-202 75-255 (372)
141 3rw6_A Nuclear RNA export fact 98.9 1.7E-10 5.7E-15 108.3 0.9 112 113-225 137-263 (267)
142 3ogk_B Coronatine-insensitive 98.8 3.3E-10 1.1E-14 117.8 0.0 17 6-22 110-126 (592)
143 3ogk_B Coronatine-insensitive 98.8 4.7E-09 1.6E-13 109.0 7.0 81 113-194 266-350 (592)
144 2p1m_B Transport inhibitor res 98.7 1.9E-09 6.5E-14 111.9 -0.6 106 116-225 371-493 (594)
145 4fdw_A Leucine rich hypothetic 98.6 6.5E-08 2.2E-12 96.2 9.5 57 135-193 267-330 (401)
146 2p1m_B Transport inhibitor res 98.6 1.7E-09 5.7E-14 112.4 -2.6 151 72-225 337-518 (594)
147 4fdw_A Leucine rich hypothetic 98.6 8.6E-08 3E-12 95.3 9.1 139 72-220 179-330 (401)
148 3rw6_A Nuclear RNA export fact 98.4 3.9E-08 1.3E-12 92.1 0.8 102 91-192 137-257 (267)
149 1io0_A Tropomodulin; LRR prote 98.4 7.8E-08 2.7E-12 85.1 2.3 65 160-224 92-162 (185)
150 2ra8_A Uncharacterized protein 98.4 2.9E-07 9.8E-12 90.3 5.8 152 72-224 138-318 (362)
151 2ra8_A Uncharacterized protein 98.3 8.9E-07 3.1E-11 86.7 7.0 129 72-201 171-322 (362)
152 1io0_A Tropomodulin; LRR prote 98.2 7.9E-07 2.7E-11 78.5 4.8 110 91-200 32-165 (185)
153 3e4g_A ATP synthase subunit S, 98.1 1.3E-06 4.5E-11 76.3 3.6 98 118-216 62-170 (176)
154 3e4g_A ATP synthase subunit S, 97.6 4E-05 1.4E-09 66.9 4.7 83 139-225 61-151 (176)
155 4h09_A Hypothetical leucine ri 97.6 0.00019 6.4E-09 70.0 9.6 106 91-201 236-347 (379)
156 4h09_A Hypothetical leucine ri 97.4 0.00091 3.1E-08 65.1 11.1 123 91-221 213-341 (379)
157 4gt6_A Cell surface protein; l 97.3 0.00079 2.7E-08 66.1 9.2 101 113-221 261-365 (394)
158 4fs7_A Uncharacterized protein 97.2 0.0011 3.9E-08 64.9 9.3 122 91-221 249-374 (394)
159 4gt6_A Cell surface protein; l 97.2 0.00085 2.9E-08 65.9 8.4 128 84-222 252-387 (394)
160 4fs7_A Uncharacterized protein 97.1 0.0016 5.4E-08 63.9 9.1 136 72-218 252-393 (394)
161 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00029 9.8E-09 62.6 2.1 111 116-226 40-170 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.9 0.0017 5.7E-08 57.6 7.0 107 91-197 37-168 (197)
163 3rfe_A Platelet glycoprotein I 96.7 0.0026 8.8E-08 52.5 6.0 39 162-201 32-70 (130)
164 3rfe_A Platelet glycoprotein I 96.5 0.0029 1E-07 52.1 5.3 52 121-174 12-68 (130)
165 2lz0_A Uncharacterized protein 46.3 31 0.0011 26.2 5.0 44 105-149 6-53 (100)
166 2lz0_A Uncharacterized protein 46.1 31 0.001 26.2 5.0 43 128-171 7-53 (100)
No 1
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=2.2e-20 Score=180.10 Aligned_cols=160 Identities=21% Similarity=0.296 Sum_probs=122.2
Q ss_pred ccccccCCcchhhhh--cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC
Q psy13376 57 SLLQESTNLAEKLQI--YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG 134 (417)
Q Consensus 57 ~l~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~ 134 (417)
.+.++.|++..+..+ +++|+.|++++|.++.++.+..+++|++|++++|.++.++.+..+++|++|++++|.++.++.
T Consensus 67 ~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~ 146 (308)
T 1h6u_A 67 GLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP 146 (308)
T ss_dssp EEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred EEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc
Confidence 345666777666656 777888888888888777777788888888888888877777778888888888888877777
Q ss_pred CccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCC
Q psy13376 135 LDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQ 214 (417)
Q Consensus 135 ~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~ 214 (417)
+..+++|++|++++|.++.++.+..+++|++|++++|.+++++. +..+++|++|++++|++++.++ +..+++
T Consensus 147 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~l~~~~~-----l~~l~~ 218 (308)
T 1h6u_A 147 LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVSP-----LANTSN 218 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCGG-----GTTCTT
T ss_pred ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCCccCcccc-----ccCCCC
Confidence 77778888888888888777767778888888888888877664 4677788888888888877664 466778
Q ss_pred cccccCcccC
Q psy13376 215 LQCYNNHIIL 224 (417)
Q Consensus 215 L~~Ld~~~~~ 224 (417)
|+.|+++.+.
T Consensus 219 L~~L~l~~N~ 228 (308)
T 1h6u_A 219 LFIVTLTNQT 228 (308)
T ss_dssp CCEEEEEEEE
T ss_pred CCEEEccCCe
Confidence 8877776654
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.82 E-value=7.3e-20 Score=178.54 Aligned_cols=208 Identities=21% Similarity=0.292 Sum_probs=104.0
Q ss_pred ccccceeeccccccCCCCchhhhHHHHHhcCCCC----CChhhhhccccccccccccccccCCcchhhhh--cccccEEE
Q psy13376 6 TVDRIKKIGLIKDRAGDESTLKNLAQVLQNAPAI----INEDLLSKKGVISENLLSLLQESTNLAEKLQI--YKLIKAVN 79 (417)
Q Consensus 6 ~~~~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~----~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~l--l~~L~~L~ 79 (417)
.+++++.+++..|.+++++.+..+.+|..+.... .....+..+ .....+.++.|.+..+..+ +++|+.|+
T Consensus 108 ~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l----~~L~~L~l~~~~~~~~~~~~~l~~L~~L~ 183 (347)
T 4fmz_A 108 NLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNM----TGLNYLTVTESKVKDVTPIANLTDLYSLS 183 (347)
T ss_dssp TCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTC----TTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred CCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhC----CCCcEEEecCCCcCCchhhccCCCCCEEE
Confidence 4577888999999999888877665555544211 011111111 1112334555555555444 55666666
Q ss_pred eecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCcCCCCC
Q psy13376 80 LRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDH 159 (417)
Q Consensus 80 Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~~l~~ 159 (417)
+++|.++.++.+..+++|+.|++++|.++.++.+..+++|++|++++|.++.++.+..+++|++|++++|.++.++.+..
T Consensus 184 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 263 (347)
T 4fmz_A 184 LNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKD 263 (347)
T ss_dssp CTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTT
T ss_pred ccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhc
Confidence 66666655554555555555555555555444444445555555555555444444444455555555554444444444
Q ss_pred CCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCccc
Q psy13376 160 LEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHII 223 (417)
Q Consensus 160 l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~ 223 (417)
+++|++|++++|.+++++ .+..+++|+.|++++|+++..+. ..+..+++|+.|+++.+
T Consensus 264 l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISDIS---VLNNLSQLNSLFLNNNQLGNEDM---EVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp CTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCGGGH---HHHHTCTTCSEEECCSS
T ss_pred CCCcCEEEccCCccCCCh---hhcCCCCCCEEECcCCcCCCcCh---hHhhccccCCEEEccCC
Confidence 444444444444444432 12344444444444444443322 23344444444444443
No 3
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.81 E-value=2.3e-19 Score=169.70 Aligned_cols=164 Identities=23% Similarity=0.318 Sum_probs=146.2
Q ss_pred ccccccCCcchhhhh--cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcc
Q psy13376 57 SLLQESTNLAEKLQI--YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQI 132 (417)
Q Consensus 57 ~l~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l 132 (417)
.+.+..+.+..+.++ +++|++|++++|.++.++.+..+++|++|++++|.++.++. +..+++|++|++++|+++.+
T Consensus 45 ~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 124 (272)
T 3rfs_A 45 QIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124 (272)
T ss_dssp EEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred eeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCcc
Confidence 445777778887777 89999999999999999889999999999999999998875 88999999999999999988
Q ss_pred cC--CccccccceeEeecCCCCCcCC--CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHH
Q psy13376 133 QG--LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFA 208 (417)
Q Consensus 133 ~~--~~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 208 (417)
+. +..+++|++|++++|.++.++. +..+++|++|++++|.++.++. ..+..+++|+.|++++|+++..++ ..
T Consensus 125 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~ 200 (272)
T 3rfs_A 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE-GVFDKLTQLKDLRLYQNQLKSVPD---GV 200 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCT---TT
T ss_pred CHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH-HHhcCCccCCEEECCCCcCCccCH---HH
Confidence 86 8899999999999999999874 7899999999999999998876 467889999999999999998876 35
Q ss_pred HhcCCCcccccCcccC
Q psy13376 209 IAMVPQLQCYNNHIIL 224 (417)
Q Consensus 209 ~~~l~~L~~Ld~~~~~ 224 (417)
+..+++|+.|+++.+.
T Consensus 201 ~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 201 FDRLTSLQYIWLHDNP 216 (272)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred HhCCcCCCEEEccCCC
Confidence 6789999999988775
No 4
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=2.1e-20 Score=178.79 Aligned_cols=165 Identities=25% Similarity=0.310 Sum_probs=103.5
Q ss_pred ccccccCCcchhhhh--cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC
Q psy13376 57 SLLQESTNLAEKLQI--YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG 134 (417)
Q Consensus 57 ~l~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~ 134 (417)
.+.++.|++..+..+ +++|+.|++++|.++.++.+..+++|++|++++|.++.++.+..+++|+.|++++|.++.++.
T Consensus 72 ~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~ 151 (291)
T 1h6t_A 72 KLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV 151 (291)
T ss_dssp EEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG
T ss_pred EEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcchh
Confidence 344566666665555 666666666666666666666666666666666666666666666666666666666666655
Q ss_pred CccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCC
Q psy13376 135 LDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQ 214 (417)
Q Consensus 135 ~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~ 214 (417)
+..+++|++|++++|.++.++.+..+++|++|++++|.|++++. +..+++|+.|++++|+++..+.+....+...+.
T Consensus 152 l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~---l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~~~~ 228 (291)
T 1h6t_A 152 LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA---LAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 228 (291)
T ss_dssp GGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCSEEEEEEEEEECCCEECCSEEEEECC
T ss_pred hccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCChh---hccCCCCCEEECcCCcccCCccccccccEEcce
Confidence 66666666666666666666556666666667776666666543 456666667777666666655433222333445
Q ss_pred cccccCcccC
Q psy13376 215 LQCYNNHIIL 224 (417)
Q Consensus 215 L~~Ld~~~~~ 224 (417)
++.+|...+.
T Consensus 229 l~~l~~~~i~ 238 (291)
T 1h6t_A 229 VKNTDGSLVT 238 (291)
T ss_dssp CBCTTSCBCC
T ss_pred EECCCCCCcC
Confidence 5555555444
No 5
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.81 E-value=3e-20 Score=175.18 Aligned_cols=164 Identities=19% Similarity=0.324 Sum_probs=134.8
Q ss_pred cccccCCcchhhhh--cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCC
Q psy13376 58 LLQESTNLAEKLQI--YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGL 135 (417)
Q Consensus 58 l~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~ 135 (417)
+.++.|++..++++ +++|+.|++++|.|+.++++..+++|++|++++|+++.++.+.. ++|++|++++|.++.++.+
T Consensus 46 L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~~l 124 (263)
T 1xeu_A 46 FNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTDSL 124 (263)
T ss_dssp EECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSGGG
T ss_pred EECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCCChhh
Confidence 34666777777766 88999999999999998888899999999999999998887666 8999999999999998888
Q ss_pred ccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCc
Q psy13376 136 DTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQL 215 (417)
Q Consensus 136 ~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L 215 (417)
..+++|++|++++|+|+.++.+..+++|++|++++|.+++++ .+..+++|+.|++++|+++..+......+...+.+
T Consensus 125 ~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~---~l~~l~~L~~L~l~~N~~~~~~~~~~~~l~~~~~l 201 (263)
T 1xeu_A 125 IHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTG---GLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201 (263)
T ss_dssp TTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCT---TSTTCCCCCEEEEEEEEEECCCEECCSEEEEECCC
T ss_pred cCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchH---HhccCCCCCEEeCCCCcccCCccccccceEECCee
Confidence 889999999999999999888888999999999999998873 46788999999999999888765322222334667
Q ss_pred ccccCcccCH
Q psy13376 216 QCYNNHIILE 225 (417)
Q Consensus 216 ~~Ld~~~~~~ 225 (417)
+.+|...+..
T Consensus 202 ~~l~~~~i~~ 211 (263)
T 1xeu_A 202 KDPDGRWISP 211 (263)
T ss_dssp BCTTSCBCCC
T ss_pred ecCCCCCcCC
Confidence 7777776653
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.80 E-value=1.8e-19 Score=175.74 Aligned_cols=235 Identities=19% Similarity=0.221 Sum_probs=182.3
Q ss_pred cccccceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhcccc--ccccccccccccC-Ccchhhhh--cccccEEE
Q psy13376 5 TTVDRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGV--ISENLLSLLQEST-NLAEKLQI--YKLIKAVN 79 (417)
Q Consensus 5 ~~~~~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~~~~--~~~~~~~l~~~~n-~i~~l~~l--l~~L~~L~ 79 (417)
..+++++.+++..|.+++++.+..+.+|..+.. ..+.+..... .......+.++.| .+..+..+ +++|+.|+
T Consensus 85 ~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l---~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~ 161 (347)
T 4fmz_A 85 SNLVKLTNLYIGTNKITDISALQNLTNLRELYL---NEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLT 161 (347)
T ss_dssp TTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEC---TTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEE
T ss_pred hcCCcCCEEEccCCcccCchHHcCCCcCCEEEC---cCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEE
Confidence 345789999999999999988887777666552 2222222210 0111234456666 44555555 88999999
Q ss_pred eecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCcCCCCC
Q psy13376 80 LRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDH 159 (417)
Q Consensus 80 Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~~l~~ 159 (417)
+++|.++.++.+..+++|++|++++|.++.++.+..+++|+.|++++|.++.++.+..+++|++|++++|.++.++.+..
T Consensus 162 l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 241 (347)
T 4fmz_A 162 VTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLAN 241 (347)
T ss_dssp CCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTT
T ss_pred ecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhc
Confidence 99999999888999999999999999999988888999999999999999988888889999999999999999888899
Q ss_pred CCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccCHHHHHHHHHHHhhhh
Q psy13376 160 LEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYDV 239 (417)
Q Consensus 160 l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~~~~~~~~~~~~~~~l 239 (417)
+++|++|++++|.++.++ .+..+++|+.|++++|+++.++. +..+++|+.|+++.+..... ....+..+
T Consensus 242 l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~L~~n~l~~~---~~~~l~~l 310 (347)
T 4fmz_A 242 LSQLTWLEIGTNQISDIN---AVKDLTKLKMLNVGSNQISDISV-----LNNLSQLNSLFLNNNQLGNE---DMEVIGGL 310 (347)
T ss_dssp CTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCSEEECCSSCCCGG---GHHHHHTC
T ss_pred CCCCCEEECCCCccCCCh---hHhcCCCcCEEEccCCccCCChh-----hcCCCCCCEEECcCCcCCCc---ChhHhhcc
Confidence 999999999999999875 35788999999999999998753 57899999999988864322 22344556
Q ss_pred hHHHHHhHHHHHHH
Q psy13376 240 RTETLKDLMVQRER 253 (417)
Q Consensus 240 ~~L~~l~~~~~~~~ 253 (417)
+.|+.++...+.+.
T Consensus 311 ~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 311 TNLTTLFLSQNHIT 324 (347)
T ss_dssp TTCSEEECCSSSCC
T ss_pred ccCCEEEccCCccc
Confidence 67777766666543
No 7
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=2.2e-19 Score=171.72 Aligned_cols=160 Identities=25% Similarity=0.316 Sum_probs=145.2
Q ss_pred ccccccCCcchhhhh--cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC
Q psy13376 57 SLLQESTNLAEKLQI--YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG 134 (417)
Q Consensus 57 ~l~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~ 134 (417)
.+.++.|.+..++++ +++|+.|++++|.++.++.+..+++|++|++++|.++.++.+..+++|++|++++|.++.++.
T Consensus 50 ~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~ 129 (291)
T 1h6t_A 50 QIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING 129 (291)
T ss_dssp EEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGG
T ss_pred EEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChh
Confidence 445777788877777 899999999999999998899999999999999999999889999999999999999999988
Q ss_pred CccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCC
Q psy13376 135 LDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQ 214 (417)
Q Consensus 135 ~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~ 214 (417)
+..+++|++|++++|+++.++.+..+++|++|++++|.+++++. +..+++|+.|++++|++++++. +..+++
T Consensus 130 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l~~-----l~~l~~ 201 (291)
T 1h6t_A 130 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLRA-----LAGLKN 201 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCGG-----GTTCTT
T ss_pred hcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCChh-----hccCCC
Confidence 99999999999999999999889999999999999999999865 6889999999999999998764 578999
Q ss_pred cccccCcccC
Q psy13376 215 LQCYNNHIIL 224 (417)
Q Consensus 215 L~~Ld~~~~~ 224 (417)
|+.|+++.+.
T Consensus 202 L~~L~l~~n~ 211 (291)
T 1h6t_A 202 LDVLELFSQE 211 (291)
T ss_dssp CSEEEEEEEE
T ss_pred CCEEECcCCc
Confidence 9999987764
No 8
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=4.1e-19 Score=171.17 Aligned_cols=163 Identities=23% Similarity=0.320 Sum_probs=148.6
Q ss_pred cccccccCCcchhhhh--cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCccc
Q psy13376 56 LSLLQESTNLAEKLQI--YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQ 133 (417)
Q Consensus 56 ~~l~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~ 133 (417)
..+.+..+.+..++++ +++|+.|++++|.++.++.+..+++|++|++++|.++.++.+..+++|++|++++|.++.++
T Consensus 44 ~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~ 123 (308)
T 1h6u_A 44 TTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT 123 (308)
T ss_dssp CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCG
T ss_pred CEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCch
Confidence 3456777888888777 89999999999999999889999999999999999999988999999999999999999998
Q ss_pred CCccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCC
Q psy13376 134 GLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVP 213 (417)
Q Consensus 134 ~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 213 (417)
.+..+++|++|++++|.++.++.+..+++|++|++++|.+++++. +..+++|+.|++++|.+++++. +..++
T Consensus 124 ~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~-----l~~l~ 195 (308)
T 1h6u_A 124 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISDISP-----LASLP 195 (308)
T ss_dssp GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG-----GGGCT
T ss_pred hhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh---hcCCCCCCEEECCCCccCcChh-----hcCCC
Confidence 899999999999999999999889999999999999999999765 6889999999999999998875 57899
Q ss_pred CcccccCcccCHH
Q psy13376 214 QLQCYNNHIILED 226 (417)
Q Consensus 214 ~L~~Ld~~~~~~~ 226 (417)
+|+.|+++.+...
T Consensus 196 ~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 196 NLIEVHLKNNQIS 208 (308)
T ss_dssp TCCEEECTTSCCC
T ss_pred CCCEEEccCCccC
Confidence 9999999887643
No 9
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=4.1e-19 Score=168.71 Aligned_cols=164 Identities=22% Similarity=0.226 Sum_probs=142.4
Q ss_pred ccccccCCcchhhh--h--cccccEEEeecCC-CCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCC
Q psy13376 57 SLLQESTNLAEKLQ--I--YKLIKAVNLRIKT-LRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYN 127 (417)
Q Consensus 57 ~l~~~~n~i~~l~~--l--l~~L~~L~Ls~N~-i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N 127 (417)
.+.++.|++..+.. + +++|++|++++|. ++.++. +..+++|++|++++|.++.++. +..+++|++|++++|
T Consensus 60 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 139 (285)
T 1ozn_A 60 ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC
Confidence 44577777777643 2 8899999999997 888843 8899999999999999998853 889999999999999
Q ss_pred CCCcccC--CccccccceeEeecCCCCCcCC--CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376 128 RIEQIQG--LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN 203 (417)
Q Consensus 128 ~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~ 203 (417)
.++.++. +..+++|++|++++|+++.++. +..+++|++|++++|.++.+.. ..+..+++|+.|++++|.++.++.
T Consensus 140 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCH
T ss_pred cccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH-hHccCcccccEeeCCCCcCCcCCH
Confidence 9998885 8899999999999999998863 8899999999999999998754 467889999999999999998875
Q ss_pred ccHHHHhcCCCcccccCcccC
Q psy13376 204 VDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 204 ~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
..+..+++|+.|+++.+.
T Consensus 219 ---~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 219 ---EALAPLRALQYLRLNDNP 236 (285)
T ss_dssp ---HHHTTCTTCCEEECCSSC
T ss_pred ---HHcccCcccCEEeccCCC
Confidence 467889999999988775
No 10
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=7.6e-19 Score=164.04 Aligned_cols=164 Identities=20% Similarity=0.254 Sum_probs=143.7
Q ss_pred ccccccCCcchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCc
Q psy13376 57 SLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQ 131 (417)
Q Consensus 57 ~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~ 131 (417)
.+..+.+.+..++.. .++++.|++++|.++.++. +..+++|++|++++|.++.++. +..+++|++|++++|.++.
T Consensus 18 ~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 97 (251)
T 3m19_A 18 EVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97 (251)
T ss_dssp EEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC
T ss_pred EEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccc
Confidence 356777778877765 7889999999999999865 8899999999999999998864 8899999999999999998
Q ss_pred ccC--CccccccceeEeecCCCCCcCC--CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHH
Q psy13376 132 IQG--LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGF 207 (417)
Q Consensus 132 l~~--~~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 207 (417)
++. |..+++|++|+|++|+|+.++. +..+++|++|++++|.|+.++. ..+..+++|+.|++++|+++.++. .
T Consensus 98 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~ 173 (251)
T 3m19_A 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSVPH---G 173 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCT---T
T ss_pred cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCccCH---H
Confidence 884 8899999999999999999874 7889999999999999999876 467889999999999999998876 3
Q ss_pred HHhcCCCcccccCcccC
Q psy13376 208 AIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 208 ~~~~l~~L~~Ld~~~~~ 224 (417)
.+..+++|+.|+++.+.
T Consensus 174 ~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTTCTTCCEEECCSCC
T ss_pred HHhCCCCCCEEEeeCCc
Confidence 56778999999988765
No 11
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=1.2e-18 Score=166.70 Aligned_cols=190 Identities=22% Similarity=0.188 Sum_probs=158.7
Q ss_pred ccccceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhccccccccccccccccCCcchhhh--h--cccccEEEee
Q psy13376 6 TVDRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQ--I--YKLIKAVNLR 81 (417)
Q Consensus 6 ~~~~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~--l--l~~L~~L~Ls 81 (417)
.+.+++.+++..++++.++.- +. ..+ ..|.++.|++..+.. + +++|+.|+++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~-------------~~----~~l-------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 63 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPD-------------LP----KDT-------TILHLSENLLYTFSLATLMPYTRLTQLNLD 63 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSC-------------CC----TTC-------CEEECTTSCCSEEEGGGGTTCTTCCEEECT
T ss_pred ccCCccEEECCCCCCCcCCCC-------------CC----CCC-------CEEEcCCCcCCccCHHHhhcCCCCCEEECC
Confidence 356778888888888876421 11 111 234677788877643 2 8999999999
Q ss_pred cCCCCCCCCcCCCcccceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcCC--
Q psy13376 82 IKTLRKIENLWMMENLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIEG-- 156 (417)
Q Consensus 82 ~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~~-- 156 (417)
+|.|+.++....+++|++|++++|.++.++. +..+++|++|++++|+++.++. |..+++|++|++++|+|+.++.
T Consensus 64 ~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 143 (290)
T 1p9a_G 64 RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143 (290)
T ss_dssp TSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred CCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhh
Confidence 9999999888899999999999999999986 8899999999999999999974 8999999999999999999873
Q ss_pred CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376 157 LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 157 l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
+..+++|++|++++|+|+.++. ..+..+++|+.|++++|+++.+|. .+...++|+.+++..++
T Consensus 144 ~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~ip~----~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 144 LTPTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENSLYTIPK----GFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCCCSEEECCSCC
T ss_pred cccccCCCEEECCCCcCCccCH-HHhcCcCCCCEEECCCCcCCccCh----hhcccccCCeEEeCCCC
Confidence 7889999999999999999887 567889999999999999999887 34567789988877654
No 12
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=1.1e-18 Score=164.70 Aligned_cols=188 Identities=18% Similarity=0.233 Sum_probs=156.4
Q ss_pred cceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhccccccccccccccccCCcchhhh--h--cccccEEEeecCC
Q psy13376 9 RIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQ--I--YKLIKAVNLRIKT 84 (417)
Q Consensus 9 ~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~--l--l~~L~~L~Ls~N~ 84 (417)
+.+.++++.+.++.++.- +. ..+ ..+.++.|++..+.. + +++|++|++++|.
T Consensus 17 ~~~~l~~~~~~l~~ip~~-------------~~-~~l----------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 72 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSN-------------IP-ADT----------KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72 (270)
T ss_dssp TTTEEECTTSCCSSCCSC-------------CC-TTC----------SEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC
T ss_pred CCCEEEccCCCCCccCCC-------------CC-CCC----------CEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc
Confidence 456788888888776431 10 011 234577777877764 3 8999999999999
Q ss_pred CCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcCC--
Q psy13376 85 LRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIEG-- 156 (417)
Q Consensus 85 i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~~-- 156 (417)
++.++. |..+++|++|++++|.++.++. +..+++|++|++++|.++.++. |..+++|++|++++|.++.++.
T Consensus 73 l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 152 (270)
T 2o6q_A 73 LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV 152 (270)
T ss_dssp CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH
Confidence 999876 7889999999999999998874 7899999999999999998885 8899999999999999999874
Q ss_pred CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376 157 LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 157 l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
+..+++|++|++++|.++.++. ..+..+++|+.|++++|+++.++. ..+..+++|+.|+++.++
T Consensus 153 ~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 153 FDKLTSLKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQLKRVPE---GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSSC
T ss_pred ccCCcccceeEecCCcCcEeCh-hHhccCCCcCEEECCCCcCCcCCH---HHhccccCCCEEEecCCC
Confidence 8899999999999999999876 467889999999999999998876 346778999999987765
No 13
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.78 E-value=1.2e-19 Score=160.27 Aligned_cols=151 Identities=29% Similarity=0.314 Sum_probs=130.9
Q ss_pred CCCCcCCCcccceEeeeCCCCCCcCCCCCCc-cCceeeeeCCCCCcccCCccccccceeEeecCCCCCcCC--CCCCCCC
Q psy13376 87 KIENLWMMENLVELDLSMNHIGVIENLDQLV-CLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEG--LDHLEKL 163 (417)
Q Consensus 87 ~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~-~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L 163 (417)
..+.+..+++|+.|++++|.++.++.+..+. +|++|++++|.++.++.+..+++|++|++++|.|+.++. +..+++|
T Consensus 11 ~~~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 11 QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp TSCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred HHHhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 3344667788999999999999887766666 999999999999988779999999999999999998863 4889999
Q ss_pred cEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccCHHHHHHHHHHHhh
Q psy13376 164 ELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMY 237 (417)
Q Consensus 164 ~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~~~~~~~~~~~~~~ 237 (417)
++|++++|.|+.++.+..+..+++|+.|++++|+++..+.++...+..+|+|+.||++.+...++..++.+|..
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~~~~~~~~~~ 164 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKG 164 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHHHHHHHTTC-
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHHHHHHHHHhc
Confidence 99999999999988766788999999999999999999987777899999999999999999888877766543
No 14
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.78 E-value=5.5e-19 Score=166.54 Aligned_cols=157 Identities=21% Similarity=0.330 Sum_probs=142.0
Q ss_pred ccccCCcchhhhh--cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCc
Q psy13376 59 LQESTNLAEKLQI--YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLD 136 (417)
Q Consensus 59 ~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~ 136 (417)
.++.+.+..+..+ +++|+.|++++|.++.++.+..+++|++|++++|.++.++.+..+++|++|++++|+++.++.+.
T Consensus 25 ~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~ 104 (263)
T 1xeu_A 25 NLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIP 104 (263)
T ss_dssp HHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCC
T ss_pred HhcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCccc
Confidence 4566677776655 99999999999999999999999999999999999999988999999999999999999999866
Q ss_pred cccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcc
Q psy13376 137 TLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQ 216 (417)
Q Consensus 137 ~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~ 216 (417)
. ++|++|++++|+++.++.+..+++|++|++++|+|++++ .+..+++|+.|++++|++++.+ .+..+++|+
T Consensus 105 ~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~~-----~l~~l~~L~ 175 (263)
T 1xeu_A 105 S-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNTG-----GLTRLKKVN 175 (263)
T ss_dssp C-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBCT-----TSTTCCCCC
T ss_pred c-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcchH-----HhccCCCCC
Confidence 6 999999999999999999999999999999999999986 4578999999999999999884 357899999
Q ss_pred cccCcccC
Q psy13376 217 CYNNHIIL 224 (417)
Q Consensus 217 ~Ld~~~~~ 224 (417)
.|+++.+.
T Consensus 176 ~L~l~~N~ 183 (263)
T 1xeu_A 176 WIDLTGQK 183 (263)
T ss_dssp EEEEEEEE
T ss_pred EEeCCCCc
Confidence 99987764
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.78 E-value=7.6e-19 Score=178.72 Aligned_cols=207 Identities=21% Similarity=0.300 Sum_probs=133.3
Q ss_pred cccceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhccc--cccccccccccccCCcchhhhh--cccccEEEeec
Q psy13376 7 VDRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKG--VISENLLSLLQESTNLAEKLQI--YKLIKAVNLRI 82 (417)
Q Consensus 7 ~~~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~~~--~~~~~~~~l~~~~n~i~~l~~l--l~~L~~L~Ls~ 82 (417)
+++++.+++..|.+++++.+..+.+|..+... .+.+.... ........+.++.|++..+..+ +++|+.|++++
T Consensus 176 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~---~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~ 252 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDISVLAKLTNLESLIAT---NNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 252 (466)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCSEEECC---SSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCS
T ss_pred CCCCCEEECcCCcCCCChhhccCCCCCEEEec---CCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCC
Confidence 45677778888888777766665555444421 11111110 0011122445666666666555 66777777777
Q ss_pred CCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCcCCCCCCCC
Q psy13376 83 KTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEK 162 (417)
Q Consensus 83 N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~ 162 (417)
|.++.++++..+++|++|++++|.++.++.+..+++|+.|++++|+++.++.+..+++|+.|++++|.++.++.+..+++
T Consensus 253 n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~ 332 (466)
T 1o6v_A 253 NQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTK 332 (466)
T ss_dssp SCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTT
T ss_pred CccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCcc
Confidence 77777666677777777777777777666666777777777777777766666677777777777777776666667777
Q ss_pred CcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376 163 LELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 163 L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
|+.|++++|.+++++ .+..+++|+.|++++|++++.++ +..+++|+.|+++.+.
T Consensus 333 L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 333 LQRLFFYNNKVSDVS---SLANLTNINWLSAGHNQISDLTP-----LANLTRITQLGLNDQA 386 (466)
T ss_dssp CCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCBCGG-----GTTCTTCCEEECCCEE
T ss_pred CCEeECCCCccCCch---hhccCCCCCEEeCCCCccCccch-----hhcCCCCCEEeccCCc
Confidence 777777777777653 34667777777777777766654 4567777777666553
No 16
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=7.2e-19 Score=166.25 Aligned_cols=187 Identities=22% Similarity=0.271 Sum_probs=150.4
Q ss_pred ceeeccccccCCCCchhhhHHHHHhcCCCC---CChhhhhccccccccccccccccCCcchhhhh--cccccEEEeecCC
Q psy13376 10 IKKIGLIKDRAGDESTLKNLAQVLQNAPAI---INEDLLSKKGVISENLLSLLQESTNLAEKLQI--YKLIKAVNLRIKT 84 (417)
Q Consensus 10 l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~---~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~l--l~~L~~L~Ls~N~ 84 (417)
+..+.+.++.+.+...+..+.++..+.... .+...+..+ .....+.++.|++..+..+ +++|++|++++|.
T Consensus 21 l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~l~~l----~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~ 96 (272)
T 3rfs_A 21 TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYL----PNVRYLALGGNKLHDISALKELTNLTYLILTGNQ 96 (272)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTTGGGC----TTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSC
T ss_pred HHHHHhcCcccccccccccccceeeeeeCCCCcccccccccC----CCCcEEECCCCCCCCchhhcCCCCCCEEECCCCc
Confidence 344566666777766666665555444221 111112211 1223556888888888777 9999999999999
Q ss_pred CCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcCC--
Q psy13376 85 LRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIEG-- 156 (417)
Q Consensus 85 i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~~-- 156 (417)
++.++. +..+++|++|++++|.++.++. +..+++|++|++++|.++.++. +..+++|++|++++|+++.++.
T Consensus 97 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 176 (272)
T 3rfs_A 97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH
Confidence 999876 8899999999999999998875 8999999999999999999886 7899999999999999999874
Q ss_pred CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCC
Q psy13376 157 LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDK 201 (417)
Q Consensus 157 l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~ 201 (417)
+..+++|++|++++|.++.++. ..+..+++|+.|++++|++...
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp TTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCC
T ss_pred hcCCccCCEEECCCCcCCccCH-HHHhCCcCCCEEEccCCCcccc
Confidence 7899999999999999999876 5678999999999999998754
No 17
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=4.9e-19 Score=178.80 Aligned_cols=209 Identities=18% Similarity=0.208 Sum_probs=144.2
Q ss_pred ccceeeccccccCCCCc--hhhhHHHHHhcCCC-----CCChhhhhccccccccccccccccCCcchhhhh----ccccc
Q psy13376 8 DRIKKIGLIKDRAGDES--TLKNLAQVLQNAPA-----IINEDLLSKKGVISENLLSLLQESTNLAEKLQI----YKLIK 76 (417)
Q Consensus 8 ~~l~~l~l~~n~l~dl~--~L~~l~~L~~~~~~-----~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~l----l~~L~ 76 (417)
++++.+++..|.++.+. .+.++.+|..+... .+....+..+ .....|.++.|++..+..- +++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 139 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL----ANLNTLELFDNRLTTIPNGAFVYLSKLK 139 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTC----SSCCEEECCSSCCSSCCTTTSCSCSSCC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCC----ccCCEEECCCCcCCeeCHhHhhccccCc
Confidence 56778888888887664 23444333333311 1111112222 1123445677777766542 67777
Q ss_pred EEEeecCCCCCCCC--cCCCcccceEeeeC-CCCCCcCC--CCCCccCceeeeeCCCCCcccCCccccccceeEeecCCC
Q psy13376 77 AVNLRIKTLRKIEN--LWMMENLVELDLSM-NHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI 151 (417)
Q Consensus 77 ~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~-N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i 151 (417)
.|++++|.|+.++. |..+++|++|++++ +.++.++. |.++++|++|++++|.++.+|.+..+++|++|+|++|.|
T Consensus 140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCC
T ss_pred eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCcc
Confidence 77777777777654 67777777777777 45555553 777888888888888888888888888888888888888
Q ss_pred CCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376 152 ETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 152 ~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
+.++ .+..+++|+.|++++|.|+.++. ..+..+++|+.|+|++|+++.++. ..+..+++|+.|+++.++
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEINLAHNNLTLLPH---DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEECTTSCCCCCCT---TTTSSCTTCCEEECCSSC
T ss_pred CccChhhhccCccCCEEECCCCceeEECh-hhhcCCCCCCEEECCCCCCCccCh---hHhccccCCCEEEcCCCC
Confidence 8773 57788888888888888888765 467788888888888888888775 345678888888877654
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.78 E-value=2.7e-23 Score=211.93 Aligned_cols=163 Identities=20% Similarity=0.242 Sum_probs=122.9
Q ss_pred ccccccCCcchhhh--h--cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCC
Q psy13376 57 SLLQESTNLAEKLQ--I--YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNR 128 (417)
Q Consensus 57 ~l~~~~n~i~~l~~--l--l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~ 128 (417)
.|+++.|+|..+.. + +++|++|++++|.++.+.+ |..+++|++|+|++|.++.++. |.++++|++|++++|.
T Consensus 36 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 115 (477)
T 2id5_A 36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK 115 (477)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC
T ss_pred EEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc
Confidence 34577777777643 2 7788888888888887733 7888888888888888887764 7788888888888888
Q ss_pred CCcccC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCc
Q psy13376 129 IEQIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENV 204 (417)
Q Consensus 129 l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 204 (417)
++.++. |..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. ..+..+++|+.|++++|.+..++.
T Consensus 116 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~- 193 (477)
T 2id5_A 116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT-EALSHLHGLIVLRLRHLNINAIRD- 193 (477)
T ss_dssp CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH-HHHTTCTTCCEEEEESCCCCEECT-
T ss_pred cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh-hHhcccCCCcEEeCCCCcCcEeCh-
Confidence 887653 778888888888888887764 57788888888888888888765 456778888888888888877654
Q ss_pred cHHHHhcCCCcccccCccc
Q psy13376 205 DGFAIAMVPQLQCYNNHII 223 (417)
Q Consensus 205 ~~~~~~~l~~L~~Ld~~~~ 223 (417)
..+..+++|+.|+++.+
T Consensus 194 --~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 194 --YSFKRLYRLKVLEISHW 210 (477)
T ss_dssp --TCSCSCTTCCEEEEECC
T ss_pred --hhcccCcccceeeCCCC
Confidence 23455666666666543
No 19
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=4.2e-19 Score=179.94 Aligned_cols=210 Identities=17% Similarity=0.193 Sum_probs=142.9
Q ss_pred ccceeeccccccCCCCc--hhhhHHHHHhcCCCCCChhhhhccc----cccccccccccccCCcchhhhh----cccccE
Q psy13376 8 DRIKKIGLIKDRAGDES--TLKNLAQVLQNAPAIINEDLLSKKG----VISENLLSLLQESTNLAEKLQI----YKLIKA 77 (417)
Q Consensus 8 ~~l~~l~l~~n~l~dl~--~L~~l~~L~~~~~~~~~~~~l~~~~----~~~~~~~~l~~~~n~i~~l~~l----l~~L~~ 77 (417)
++++.++++.|.++.+. .+.++.+|..+. ++.+.+.... ........|.++.|++..+..- +++|+.
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~---Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQ---LGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEE---CCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEE---CCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence 46888899999888763 344444444333 2221111110 0001123445667777666542 667777
Q ss_pred EEeecCCCCCCCC--cCCCcccceEeeeC-CCCCCcCC--CCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCC
Q psy13376 78 VNLRIKTLRKIEN--LWMMENLVELDLSM-NHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIE 152 (417)
Q Consensus 78 L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~-N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~ 152 (417)
|++++|.|+.++. |..+++|+.|++++ |.++.++. |.++++|++|++++|+++.++.+..+++|++|+|++|.++
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCS
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCc
Confidence 7777777777654 66777777777776 45665553 7777888888888888888877778888888888888887
Q ss_pred CcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376 153 TIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 153 ~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
.++ .+..+++|+.|++++|.++.++. ..+..+++|+.|+|++|.++.++. ..+..+++|+.|+++.++
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIER-NAFDGLASLVELNLAHNNLSSLPH---DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCT---TSSTTCTTCCEEECCSSC
T ss_pred ccCcccccCccCCCEEEeCCCcCceECH-HHhcCCCCCCEEECCCCcCCccCh---HHhccccCCCEEEccCCC
Confidence 773 47778888888888888887755 466788888888888888887775 345667888888877654
No 20
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=2.6e-18 Score=162.17 Aligned_cols=165 Identities=22% Similarity=0.245 Sum_probs=146.8
Q ss_pred ccccccCCcchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCc
Q psy13376 57 SLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQ 131 (417)
Q Consensus 57 ~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~ 131 (417)
.+..+.++++.++.. .++++.|++++|.++.++. |..+++|++|++++|.++.++. |..+++|++|++++|.++.
T Consensus 20 ~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~ 99 (270)
T 2o6q_A 20 SVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99 (270)
T ss_dssp EEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC
T ss_pred EEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc
Confidence 456778888887765 7789999999999999975 8999999999999999999875 7899999999999999999
Q ss_pred ccC--CccccccceeEeecCCCCCcCC--CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHH
Q psy13376 132 IQG--LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGF 207 (417)
Q Consensus 132 l~~--~~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 207 (417)
++. |..+++|++|++++|.++.++. +..+++|++|++++|.++.++. ..+..+++|+.|++++|.++.++. .
T Consensus 100 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~ 175 (270)
T 2o6q_A 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK-GVFDKLTSLKELRLYNNQLKRVPE---G 175 (270)
T ss_dssp CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCT---T
T ss_pred CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH-hHccCCcccceeEecCCcCcEeCh---h
Confidence 885 7899999999999999999863 8899999999999999999876 467899999999999999999876 3
Q ss_pred HHhcCCCcccccCcccCH
Q psy13376 208 AIAMVPQLQCYNNHIILE 225 (417)
Q Consensus 208 ~~~~l~~L~~Ld~~~~~~ 225 (417)
.+..+++|+.|+++.+..
T Consensus 176 ~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 176 AFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp TTTTCTTCCEEECCSSCC
T ss_pred HhccCCCcCEEECCCCcC
Confidence 467789999999987753
No 21
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=2.7e-19 Score=173.01 Aligned_cols=230 Identities=15% Similarity=0.140 Sum_probs=174.1
Q ss_pred ccccceeeccccccCCCCch--hhhHHHHHhcCCCCCChhhhhcccc--ccccccccccccCCcchhhhhcccccEEEee
Q psy13376 6 TVDRIKKIGLIKDRAGDEST--LKNLAQVLQNAPAIINEDLLSKKGV--ISENLLSLLQESTNLAEKLQIYKLIKAVNLR 81 (417)
Q Consensus 6 ~~~~l~~l~l~~n~l~dl~~--L~~l~~L~~~~~~~~~~~~l~~~~~--~~~~~~~l~~~~n~i~~l~~ll~~L~~L~Ls 81 (417)
..++++.++++.|.++++.+ +..+.+|..+. +..+.+..... .......+.++.|++..+.. .++|+.|+++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~---Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~-~~~L~~L~l~ 107 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLN---LSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-GPSIETLHAA 107 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEE---CTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE-CTTCCEEECC
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEE---CCCCcCCcchhhhhcCCCCEEECcCCccccccC-CCCcCEEECC
Confidence 45689999999999999863 55555555444 22222222100 01122345677777776553 5888899999
Q ss_pred cCCCCCCCCcCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCCcccC--C-ccccccceeEeecCCCCCcCC
Q psy13376 82 IKTLRKIENLWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIEQIQG--L-DTLVNLKVLNLKMNRIETIEG 156 (417)
Q Consensus 82 ~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~--~-~~l~~L~~L~Ls~N~i~~l~~ 156 (417)
+|.++.++. ..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. + ..+++|++|++++|.|+.++.
T Consensus 108 ~n~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 186 (317)
T 3o53_A 108 NNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (317)
T ss_dssp SSCCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred CCccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc
Confidence 998887754 34788999999999999886 48889999999999999998753 4 478999999999999999987
Q ss_pred CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccCHHHHHHHHHHHh
Q psy13376 157 LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHM 236 (417)
Q Consensus 157 l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~~~~~~~~~~~~~ 236 (417)
...+++|++|++++|.++.++. .+..+++|+.|++++|+++.++. .+..+++|+.|+++.+.... .....+.
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~L~~L~L~~N~l~~l~~----~~~~l~~L~~L~l~~N~~~~--~~~~~~~ 258 (317)
T 3o53_A 187 QVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLIEK----ALRFSQNLEHFDLRGNGFHC--GTLRDFF 258 (317)
T ss_dssp CCCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTSCCCEECT----TCCCCTTCCEEECTTCCCBH--HHHHHHH
T ss_pred ccccccCCEEECCCCcCCcchh--hhcccCcccEEECcCCcccchhh----HhhcCCCCCEEEccCCCccC--cCHHHHH
Confidence 7789999999999999999876 37889999999999999998876 45788999999998877541 1233445
Q ss_pred hhhhHHHHHhHH
Q psy13376 237 YDVRTETLKDLM 248 (417)
Q Consensus 237 ~~l~~L~~l~~~ 248 (417)
..+..++.++..
T Consensus 259 ~~~~~L~~l~l~ 270 (317)
T 3o53_A 259 SKNQRVQTVAKQ 270 (317)
T ss_dssp HTCHHHHHHHHH
T ss_pred hccccceEEECC
Confidence 566666666554
No 22
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=3e-19 Score=171.36 Aligned_cols=215 Identities=20% Similarity=0.289 Sum_probs=165.0
Q ss_pred ccccc-ccceeeccccccCCCCch--hhhHHHHHhcCCCCCChhhhhccc------cccccccccccccCCcchhhhh--
Q psy13376 3 IPTTV-DRIKKIGLIKDRAGDEST--LKNLAQVLQNAPAIINEDLLSKKG------VISENLLSLLQESTNLAEKLQI-- 71 (417)
Q Consensus 3 ip~~~-~~l~~l~l~~n~l~dl~~--L~~l~~L~~~~~~~~~~~~l~~~~------~~~~~~~~l~~~~n~i~~l~~l-- 71 (417)
+|..+ ++++.+++..|.++.++. +.++.+|..+. +..+.+...+ ........+.+++|.+..+...
T Consensus 22 ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~---L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~ 98 (306)
T 2z66_A 22 VPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLS---LSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 98 (306)
T ss_dssp CCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE---CCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEE
T ss_pred CCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEE---CCCCccCcccCcccccccccccCEEECCCCccccChhhcC
Confidence 45433 579999999999998876 56666665555 2222222110 0012234567888888877653
Q ss_pred -cccccEEEeecCCCCCCCC---cCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCCc--ccC-Cccccccc
Q psy13376 72 -YKLIKAVNLRIKTLRKIEN---LWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIEQ--IQG-LDTLVNLK 142 (417)
Q Consensus 72 -l~~L~~L~Ls~N~i~~i~~---l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~--l~~-~~~l~~L~ 142 (417)
+++|++|++++|.++.++. +..+++|++|++++|.++.+. .+..+++|++|++++|.++. ++. +..+++|+
T Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 178 (306)
T 2z66_A 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178 (306)
T ss_dssp TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence 8899999999999988753 788999999999999998664 38889999999999999985 554 88899999
Q ss_pred eeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCC-Cccccc
Q psy13376 143 VLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVP-QLQCYN 219 (417)
Q Consensus 143 ~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~-~L~~Ld 219 (417)
+|++++|.++.++ .+..+++|++|++++|.++.++. ..+..+++|+.|++++|+++...+ ..+..++ +|+.|+
T Consensus 179 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~~~~~L~~L~ 254 (306)
T 2z66_A 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIMTSKK---QELQHFPSSLAFLN 254 (306)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-GGGTTCTTCCEEECTTSCCCBCSS---SSCCCCCTTCCEEE
T ss_pred EEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-hhccCcccCCEeECCCCCCcccCH---HHHHhhhccCCEEE
Confidence 9999999999883 58889999999999999998876 356889999999999999988654 2345564 899998
Q ss_pred CcccC
Q psy13376 220 NHIIL 224 (417)
Q Consensus 220 ~~~~~ 224 (417)
++.+.
T Consensus 255 L~~N~ 259 (306)
T 2z66_A 255 LTQND 259 (306)
T ss_dssp CTTCC
T ss_pred ccCCC
Confidence 88765
No 23
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=3.3e-19 Score=187.14 Aligned_cols=210 Identities=23% Similarity=0.250 Sum_probs=121.0
Q ss_pred ceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhccccccccccccccccCCcchhhhh--cccccEEEeecCCCCC
Q psy13376 10 IKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQI--YKLIKAVNLRIKTLRK 87 (417)
Q Consensus 10 l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~ 87 (417)
+..+.+.++.+.++..+..+.+|..+.........+..++. ......|.++.|++..+..+ +++|+.|+|++|.++.
T Consensus 23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~l~~-l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~ 101 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQY-LPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD 101 (605)
T ss_dssp HHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTTGGG-CTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred HHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChHHcc-CCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC
Confidence 33445556666666555555444433311110000111100 01112345666666666555 6667777777777776
Q ss_pred CCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCcCCCCCCCCCcEEe
Q psy13376 88 IENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFN 167 (417)
Q Consensus 88 i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~ 167 (417)
++.+..+++|+.|+|++|.++.++.+..+++|+.|+|++|.++.++.+..+++|+.|+|++|.|+.++++..+++|+.|+
T Consensus 102 l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~ 181 (605)
T 1m9s_A 102 LSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY 181 (605)
T ss_dssp CTTSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred ChhhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEE
Confidence 66666677777777777777766666667777777777777766655666677777777777776665566677777777
Q ss_pred ccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCccc
Q psy13376 168 IAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHII 223 (417)
Q Consensus 168 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~ 223 (417)
|++|.|++++. +..+++|+.|+|++|+++..|.+....+..++.++.++...+
T Consensus 182 Ls~N~i~~l~~---l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~~l~~l~g~~~ 234 (605)
T 1m9s_A 182 LSKNHISDLRA---LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234 (605)
T ss_dssp CCSSCCCBCGG---GTTCTTCSEEECCSEEEECCCCCCCSSCEEECCCBCSSSCBC
T ss_pred CcCCCCCCChH---HccCCCCCEEEccCCcCcCCcccccccEEecccccccCCCCc
Confidence 77777766543 456667777777777666655432222233344444444443
No 24
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=2.1e-18 Score=159.06 Aligned_cols=165 Identities=22% Similarity=0.281 Sum_probs=140.0
Q ss_pred cccccCCcchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcc
Q psy13376 58 LLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQI 132 (417)
Q Consensus 58 l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l 132 (417)
+..+.+++..++.. .++|+.|++++|.|+.+++ |..+++|++|+|++|.++.++. |..+++|++|+|++|+|+.+
T Consensus 24 v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l 103 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103 (229)
T ss_dssp EECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred eEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc
Confidence 45667777777765 8899999999999999854 8899999999999999999874 78999999999999999999
Q ss_pred cC--CccccccceeEeecCCCCCcC-CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC----cc
Q psy13376 133 QG--LDTLVNLKVLNLKMNRIETIE-GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN----VD 205 (417)
Q Consensus 133 ~~--~~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~----~~ 205 (417)
+. |..+++|++|+|++|+|+.+| .+..+++|++|++++|+|+.++. ..+..+++|+.|++++|++..... ++
T Consensus 104 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~ 182 (229)
T 3e6j_A 104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNPWDCECRDIMYLR 182 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCBCTTBGGGHHHH
T ss_pred ChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCCccCCcchhHHHH
Confidence 86 789999999999999999996 68899999999999999999886 567899999999999999987654 34
Q ss_pred HHHHhcCCCcccccCccc
Q psy13376 206 GFAIAMVPQLQCYNNHII 223 (417)
Q Consensus 206 ~~~~~~l~~L~~Ld~~~~ 223 (417)
.+.....+.+..++...+
T Consensus 183 ~~~~~~~~~~~~~~g~~v 200 (229)
T 3e6j_A 183 NWVADHTSIAMRWDGKAV 200 (229)
T ss_dssp HHHHHCGGGEEEESSSEE
T ss_pred HHHHhCccccccccCccc
Confidence 445555555655555443
No 25
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=1.4e-18 Score=166.01 Aligned_cols=165 Identities=19% Similarity=0.198 Sum_probs=147.2
Q ss_pred ccccccCCcchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCccc
Q psy13376 57 SLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQ 133 (417)
Q Consensus 57 ~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~ 133 (417)
.+....++++.++.. .++++.|++++|.++.++. +..+++|++|++++|.++.++....+++|++|++++|.++.+|
T Consensus 14 ~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~ 93 (290)
T 1p9a_G 14 EVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP 93 (290)
T ss_dssp EEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCC
T ss_pred EEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCc
Confidence 446777888887655 7899999999999998853 8999999999999999999987789999999999999999999
Q ss_pred C-CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHh
Q psy13376 134 G-LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIA 210 (417)
Q Consensus 134 ~-~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 210 (417)
. +..+++|++|++++|+|+.++ .|..+++|++|++++|+++.++. ..+..+++|+.|++++|+++.++. ..+.
T Consensus 94 ~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~---~~~~ 169 (290)
T 1p9a_G 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP-GLLTPTPKLEKLSLANNNLTELPA---GLLN 169 (290)
T ss_dssp CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCSCCCT---TTTT
T ss_pred hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh-hhcccccCCCEEECCCCcCCccCH---HHhc
Confidence 7 889999999999999999996 48999999999999999999876 567889999999999999999886 4567
Q ss_pred cCCCcccccCcccCH
Q psy13376 211 MVPQLQCYNNHIILE 225 (417)
Q Consensus 211 ~l~~L~~Ld~~~~~~ 225 (417)
.+++|+.|+++.+..
T Consensus 170 ~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 170 GLENLDTLLLQENSL 184 (290)
T ss_dssp TCTTCCEEECCSSCC
T ss_pred CcCCCCEEECCCCcC
Confidence 799999999887753
No 26
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=1.9e-18 Score=181.39 Aligned_cols=161 Identities=25% Similarity=0.308 Sum_probs=148.5
Q ss_pred cccccccCCcchhhhh--cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCccc
Q psy13376 56 LSLLQESTNLAEKLQI--YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQ 133 (417)
Q Consensus 56 ~~l~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~ 133 (417)
..|.++.|.|..++.+ +++|+.|+|++|.|+.++++..+++|+.|+|++|.++.++.+..+++|+.|+|++|.++.++
T Consensus 46 ~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~ 125 (605)
T 1m9s_A 46 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN 125 (605)
T ss_dssp CCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCG
T ss_pred CEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCc
Confidence 3456888999988887 99999999999999999889999999999999999999999999999999999999999998
Q ss_pred CCccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCC
Q psy13376 134 GLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVP 213 (417)
Q Consensus 134 ~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 213 (417)
.+..+++|+.|+|++|.|+.++.+..+++|+.|+|++|.|+.+++ +..+++|+.|+|++|++++++. +..++
T Consensus 126 ~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l~~-----l~~l~ 197 (605)
T 1m9s_A 126 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLRA-----LAGLK 197 (605)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCGG-----GTTCT
T ss_pred cccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCChH-----HccCC
Confidence 899999999999999999999889999999999999999998765 6889999999999999998754 67899
Q ss_pred CcccccCcccC
Q psy13376 214 QLQCYNNHIIL 224 (417)
Q Consensus 214 ~L~~Ld~~~~~ 224 (417)
+|+.|+++.+.
T Consensus 198 ~L~~L~L~~N~ 208 (605)
T 1m9s_A 198 NLDVLELFSQE 208 (605)
T ss_dssp TCSEEECCSEE
T ss_pred CCCEEEccCCc
Confidence 99999988765
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.77 E-value=9.1e-23 Score=207.99 Aligned_cols=195 Identities=19% Similarity=0.263 Sum_probs=100.3
Q ss_pred ccccc-ccceeeccccccCCCCch--hhhHHHHHhcCCCCCChhhhhccccccccccccccccCCcchhhh--h--cccc
Q psy13376 3 IPTTV-DRIKKIGLIKDRAGDEST--LKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQ--I--YKLI 75 (417)
Q Consensus 3 ip~~~-~~l~~l~l~~n~l~dl~~--L~~l~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~--l--l~~L 75 (417)
||..+ .+++.++++.|.++.+.+ +.++.+|..+ .++.|.+..+.. + +++|
T Consensus 26 ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L-----------------------~L~~n~i~~~~~~~~~~l~~L 82 (477)
T 2id5_A 26 VPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEEL-----------------------ELNENIVSAVEPGAFNNLFNL 82 (477)
T ss_dssp CCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEE-----------------------ECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCCCCCcEEECCCCccceECHhHccCCCCCCEE-----------------------ECCCCccCEeChhhhhCCccC
Confidence 45433 467888888888887642 3333333222 334444443321 1 4455
Q ss_pred cEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCCcccC--CccccccceeEeecC
Q psy13376 76 KAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN 149 (417)
Q Consensus 76 ~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N 149 (417)
+.|++++|.++.++. |..+++|++|++++|.++.+. .+..+++|++|++++|.++.++. |..+++|++|++++|
T Consensus 83 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp CEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred CEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence 555555555555443 445555555555555555442 14455555555555555544432 444555555555555
Q ss_pred CCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCC------------------------CcCEEeccCCCCCCCCC
Q psy13376 150 RIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFK------------------------HLGRLNIERNPVCDKEN 203 (417)
Q Consensus 150 ~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~------------------------~L~~L~L~~N~l~~~~~ 203 (417)
.++.++ .+..+++|+.|++++|.+..++. ..+..++ +|+.|++++|.++.++.
T Consensus 163 ~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 241 (477)
T 2id5_A 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRD-YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241 (477)
T ss_dssp CCSSCCHHHHTTCTTCCEEEEESCCCCEECT-TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH
T ss_pred cCcccChhHhcccCCCcEEeCCCCcCcEeCh-hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH
Confidence 554443 24444455555555554444333 2233333 56666666666666553
Q ss_pred ccHHHHhcCCCcccccCcccC
Q psy13376 204 VDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 204 ~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
..+..+++|+.|+++.+.
T Consensus 242 ---~~~~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 242 ---LAVRHLVYLRFLNLSYNP 259 (477)
T ss_dssp ---HHHTTCTTCCEEECCSSC
T ss_pred ---HHhcCccccCeeECCCCc
Confidence 355667777777776654
No 28
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=1.1e-20 Score=185.35 Aligned_cols=163 Identities=24% Similarity=0.308 Sum_probs=127.8
Q ss_pred ccccCCcchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCccc
Q psy13376 59 LQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQ 133 (417)
Q Consensus 59 ~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~ 133 (417)
..+.+.++.++.- .++|++|++++|.++.++. +..+++|++|++++|.++.++. +.++++|++|++++|.++.++
T Consensus 37 ~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 116 (353)
T 2z80_A 37 KGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116 (353)
T ss_dssp ECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC
T ss_pred eCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC
Confidence 4566677777655 6788888888888888765 8888888888888888887743 888888888888888888887
Q ss_pred C--CccccccceeEeecCCCCCcCC---CCCCCCCcEEeccCC-ccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHH
Q psy13376 134 G--LDTLVNLKVLNLKMNRIETIEG---LDHLEKLELFNIAAN-RIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGF 207 (417)
Q Consensus 134 ~--~~~l~~L~~L~Ls~N~i~~l~~---l~~l~~L~~L~Ls~N-~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 207 (417)
. +..+++|++|++++|+++.++. +..+++|++|++++| .+..++. ..+..+++|+.|++++|.+....+ .
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~---~ 192 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-KDFAGLTFLEELEIDASDLQSYEP---K 192 (353)
T ss_dssp HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCEECT---T
T ss_pred HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH-HHccCCCCCCEEECCCCCcCccCH---H
Confidence 5 7788888888888888888764 778888888888888 4777654 456788888888888888877643 2
Q ss_pred HHhcCCCcccccCcccCH
Q psy13376 208 AIAMVPQLQCYNNHIILE 225 (417)
Q Consensus 208 ~~~~l~~L~~Ld~~~~~~ 225 (417)
.+..+++|+.|+++.+..
T Consensus 193 ~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp TTTTCSEEEEEEEECSCS
T ss_pred HHhccccCCeecCCCCcc
Confidence 456778888888877653
No 29
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=2e-18 Score=159.75 Aligned_cols=190 Identities=15% Similarity=0.194 Sum_probs=142.2
Q ss_pred cccccccceeeccccccCCCCch--hhhHHHHHhcCCCCCChhhhhccccccccccccccccCC-cchhhhh----cccc
Q psy13376 3 IPTTVDRIKKIGLIKDRAGDEST--LKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTN-LAEKLQI----YKLI 75 (417)
Q Consensus 3 ip~~~~~l~~l~l~~n~l~dl~~--L~~l~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~-i~~l~~l----l~~L 75 (417)
||..-.+++.+++..|.++.+++ +.+ +.++ ..+.++.|+ +..+... +++|
T Consensus 26 ip~~~~~l~~L~l~~n~l~~i~~~~~~~----------------l~~L-------~~L~l~~n~~l~~i~~~~f~~l~~L 82 (239)
T 2xwt_C 26 IPSLPPSTQTLKLIETHLRTIPSHAFSN----------------LPNI-------SRIYVSIDVTLQQLESHSFYNLSKV 82 (239)
T ss_dssp CCCCCTTCCEEEEESCCCSEECTTTTTT----------------CTTC-------CEEEEECCSSCCEECTTTEESCTTC
T ss_pred cCCCCCcccEEEEeCCcceEECHHHccC----------------CCCC-------cEEeCCCCCCcceeCHhHcCCCcCC
Confidence 44423467788888888776543 111 1222 234566775 7666642 7888
Q ss_pred cEEEeec-CCCCCCCC--cCCCcccceEeeeCCCCCCcCCCCCCccCc---eeeeeCC-CCCcccC--Cccccccc-eeE
Q psy13376 76 KAVNLRI-KTLRKIEN--LWMMENLVELDLSMNHIGVIENLDQLVCLE---KLDLGYN-RIEQIQG--LDTLVNLK-VLN 145 (417)
Q Consensus 76 ~~L~Ls~-N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~---~L~Ls~N-~l~~l~~--~~~l~~L~-~L~ 145 (417)
++|++++ |.++.++. |..+++|++|++++|.++.+|.+..+++|+ +|++++| .++.++. |..+++|+ +|+
T Consensus 83 ~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~ 162 (239)
T 2xwt_C 83 THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK 162 (239)
T ss_dssp CEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEE
T ss_pred cEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEE
Confidence 8999988 88888764 778888999999999888888777888887 8999998 8888875 88888898 999
Q ss_pred eecCCCCCcCC--CCCCCCCcEEeccCCc-cCcchhhhhhhCC-CCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCc
Q psy13376 146 LKMNRIETIEG--LDHLEKLELFNIAANR-IQSLASLVYLRRF-KHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNH 221 (417)
Q Consensus 146 Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~-i~~l~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~ 221 (417)
+++|+++.++. +.. ++|+.|++++|+ ++.++. ..+..+ ++|+.|++++|+++.++. ..+++|+.|++.
T Consensus 163 l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~N~l~~l~~------~~~~~L~~L~l~ 234 (239)
T 2xwt_C 163 LYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQTSVTALPS------KGLEHLKELIAR 234 (239)
T ss_dssp CCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTTCCCCCCCC------TTCTTCSEEECT
T ss_pred cCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCCCccccCCh------hHhccCceeecc
Confidence 99998888763 444 788999999994 888765 466778 889999999999988876 257788877766
Q ss_pred cc
Q psy13376 222 II 223 (417)
Q Consensus 222 ~~ 223 (417)
.+
T Consensus 235 ~~ 236 (239)
T 2xwt_C 235 NT 236 (239)
T ss_dssp TC
T ss_pred Cc
Confidence 54
No 30
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=5e-20 Score=178.16 Aligned_cols=208 Identities=16% Similarity=0.206 Sum_probs=170.7
Q ss_pred ccccceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhccccccccccccccccCCcchhhhh-cccccEEEeecCC
Q psy13376 6 TVDRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQI-YKLIKAVNLRIKT 84 (417)
Q Consensus 6 ~~~~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~ 84 (417)
.+++++.++++.|.++...++..+.+|..+. ++.+.+..++ .......+.++.|++..+... +++|+.|++++|.
T Consensus 56 ~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~---Ls~n~l~~l~-~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~ 131 (317)
T 3o53_A 56 PFTKLELLNLSSNVLYETLDLESLSTLRTLD---LNNNYVQELL-VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK 131 (317)
T ss_dssp TCTTCCEEECTTSCCEEEEEETTCTTCCEEE---CCSSEEEEEE-ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSC
T ss_pred CCCcCCEEECCCCcCCcchhhhhcCCCCEEE---CcCCcccccc-CCCCcCEEECCCCccCCcCccccCCCCEEECCCCC
Confidence 4578999999999999887777776666666 5555565552 223344677899999888766 9999999999999
Q ss_pred CCCCCC--cCCCcccceEeeeCCCCCCcC--CC-CCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCcC-CCC
Q psy13376 85 LRKIEN--LWMMENLVELDLSMNHIGVIE--NL-DQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIE-GLD 158 (417)
Q Consensus 85 i~~i~~--l~~l~~L~~L~Ls~N~l~~l~--~l-~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~-~l~ 158 (417)
++.+++ +..+++|++|++++|.++.++ .+ ..+++|++|++++|.++.++....+++|++|++++|+++.++ .+.
T Consensus 132 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 211 (317)
T 3o53_A 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQ 211 (317)
T ss_dssp CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGG
T ss_pred CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhc
Confidence 999864 788999999999999999874 24 578999999999999999988777999999999999999985 588
Q ss_pred CCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCc
Q psy13376 159 HLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNH 221 (417)
Q Consensus 159 ~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~ 221 (417)
.+++|++|++++|.++.++. .+..+++|+.|++++|++..... ...+..+++|+.++..
T Consensus 212 ~l~~L~~L~L~~N~l~~l~~--~~~~l~~L~~L~l~~N~~~~~~~--~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 212 SAAGVTWISLRNNKLVLIEK--ALRFSQNLEHFDLRGNGFHCGTL--RDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp GGTTCSEEECTTSCCCEECT--TCCCCTTCCEEECTTCCCBHHHH--HHHHHTCHHHHHHHHH
T ss_pred ccCcccEEECcCCcccchhh--HhhcCCCCCEEEccCCCccCcCH--HHHHhccccceEEECC
Confidence 89999999999999999876 56889999999999999983211 2356667777766554
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.76 E-value=2.4e-18 Score=175.04 Aligned_cols=208 Identities=22% Similarity=0.283 Sum_probs=105.7
Q ss_pred ccccceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhc------ccccc-----------------cccccccccc
Q psy13376 6 TVDRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSK------KGVIS-----------------ENLLSLLQES 62 (417)
Q Consensus 6 ~~~~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~------~~~~~-----------------~~~~~l~~~~ 62 (417)
.+++++.+++..|.+++++++.++.+|..+.. ..+.+.. +..+. .....+.++.
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l---~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~ 186 (466)
T 1o6v_A 110 NLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL---SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 186 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGGGTTCTTCSEEEE---EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCS
T ss_pred CCCCCCEEECCCCCCCCChHHcCCCCCCEEEC---CCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcC
Confidence 34667777777777777776665554444331 1111111 10000 0112233444
Q ss_pred CCcchhhhh--cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCccccc
Q psy13376 63 TNLAEKLQI--YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVN 140 (417)
Q Consensus 63 n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~~l~~ 140 (417)
|++..+..+ +++|+.|++++|.++.+++++.+++|+.|++++|.++.++.+..+++|++|++++|.++.++.+..+++
T Consensus 187 n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~ 266 (466)
T 1o6v_A 187 NKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK 266 (466)
T ss_dssp SCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTT
T ss_pred CcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCC
Confidence 555444444 455555555555555554455555555555555555555445555555555555555555544555555
Q ss_pred cceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccC
Q psy13376 141 LKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNN 220 (417)
Q Consensus 141 L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~ 220 (417)
|++|++++|.++.++.+..+++|++|++++|.++.++. +..+++|+.|++++|++++.++ +..+++|+.|++
T Consensus 267 L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l 338 (466)
T 1o6v_A 267 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFF 338 (466)
T ss_dssp CSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSCCGG-----GGGCTTCCEEEC
T ss_pred CCEEECCCCccCccccccCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCcCCCchh-----hccCccCCEeEC
Confidence 55555555555555445555555555555555555433 3445555555555555555443 244555555555
Q ss_pred cccC
Q psy13376 221 HIIL 224 (417)
Q Consensus 221 ~~~~ 224 (417)
+.+.
T Consensus 339 ~~n~ 342 (466)
T 1o6v_A 339 YNNK 342 (466)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 5443
No 32
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=4.2e-18 Score=153.15 Aligned_cols=145 Identities=19% Similarity=0.281 Sum_probs=125.7
Q ss_pred cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCc--ccCCccccccceeEeecC
Q psy13376 72 YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQ--IQGLDTLVNLKVLNLKMN 149 (417)
Q Consensus 72 l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~--l~~~~~l~~L~~L~Ls~N 149 (417)
+++|+.|++++|.++.++.+..+++|++|++++|.++.++.+..+++|++|++++|.++. .+.+..+++|++|++++|
T Consensus 43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122 (197)
T ss_dssp HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred cCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence 888999999999999988888999999999999998888888899999999999999986 345889999999999999
Q ss_pred CCCC--cCCCCCCCCCcEEeccCCc-cCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376 150 RIET--IEGLDHLEKLELFNIAANR-IQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 150 ~i~~--l~~l~~l~~L~~L~Ls~N~-i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
.++. .+.+..+++|++|++++|. +++++. +..+++|+.|++++|++++++. +..+++|+.|+++.+.
T Consensus 123 ~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~---l~~l~~L~~L~l~~n~i~~~~~-----l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMP---LKTLPELKSLNIQFDGVHDYRG-----IEDFPKLNQLYAFSQT 192 (197)
T ss_dssp BCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG---GGGCSSCCEEECTTBCCCCCTT-----GGGCSSCCEEEECBC-
T ss_pred ccCcHhHHHHhhCCCCCEEEccCCCCccccHh---hcCCCCCCEEECCCCCCcChHH-----hccCCCCCEEEeeCcc
Confidence 9987 3468889999999999997 888763 5788999999999999988764 5678999999887765
No 33
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.75 E-value=6.8e-18 Score=164.13 Aligned_cols=162 Identities=19% Similarity=0.232 Sum_probs=90.7
Q ss_pred ccccCCcchhhhh---cccccEEEeecCCCCCCCC-cCCCcccceEeeeCCCC-CCcCC-CC---------CCccCceee
Q psy13376 59 LQESTNLAEKLQI---YKLIKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHI-GVIEN-LD---------QLVCLEKLD 123 (417)
Q Consensus 59 ~~~~n~i~~l~~l---l~~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l-~~l~~-l~---------~l~~L~~L~ 123 (417)
.++.|++..++.. +++|++|++++|.++.++. +..+++|++|++++|.+ ..+|. +. ++++|++|+
T Consensus 110 ~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~ 189 (328)
T 4fcg_A 110 TIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189 (328)
T ss_dssp EEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEE
T ss_pred ECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEE
Confidence 3444555544332 5666666666666666553 56666666666666433 33432 22 366666666
Q ss_pred eeCCCCCcccC-CccccccceeEeecCCCCCcC-CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCC
Q psy13376 124 LGYNRIEQIQG-LDTLVNLKVLNLKMNRIETIE-GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDK 201 (417)
Q Consensus 124 Ls~N~l~~l~~-~~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~ 201 (417)
+++|.++.+|. +..+++|++|++++|.++.++ .+..+++|++|++++|.+....+ ..+..+++|+.|++++|++...
T Consensus 190 L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~ 268 (328)
T 4fcg_A 190 LEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP-PIFGGRAPLKRLILKDCSNLLT 268 (328)
T ss_dssp EEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCC-CCTTCCCCCCEEECTTCTTCCB
T ss_pred CcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhH-HHhcCCCCCCEEECCCCCchhh
Confidence 66666666654 566666666666666666654 35566666666666655544322 2445566666666666554442
Q ss_pred CCccHHHHhcCCCcccccCcccC
Q psy13376 202 ENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 202 ~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
.+ ..+..+++|+.|+++.+.
T Consensus 269 ~p---~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 269 LP---LDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp CC---TTGGGCTTCCEEECTTCT
T ss_pred cc---hhhhcCCCCCEEeCCCCC
Confidence 22 124556666666666544
No 34
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.75 E-value=4.6e-22 Score=208.54 Aligned_cols=163 Identities=20% Similarity=0.227 Sum_probs=87.9
Q ss_pred cccccCCcchhhhh----cccccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCC
Q psy13376 58 LLQESTNLAEKLQI----YKLIKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIE 130 (417)
Q Consensus 58 l~~~~n~i~~l~~l----l~~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~ 130 (417)
+.++.|++..+... +++|+.|++++|.++.+|. +..+++|++|++++|.++.++ .+..+++|++|++++|.+.
T Consensus 259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 338 (606)
T 3t6q_A 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338 (606)
T ss_dssp EECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSC
T ss_pred EEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcc
Confidence 34555555555432 5667777777777766654 666666677777666666552 2555566666666666554
Q ss_pred -cccC--CccccccceeEeecCCCCCcC----CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376 131 -QIQG--LDTLVNLKVLNLKMNRIETIE----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN 203 (417)
Q Consensus 131 -~l~~--~~~l~~L~~L~Ls~N~i~~l~----~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~ 203 (417)
.++. +..+++|++|++++|.++.++ .+..+++|++|++++|.+..++. ..+..+++|+.|++++|++.....
T Consensus 339 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~ 417 (606)
T 3t6q_A 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT-EAFKECPQLELLDLAFTRLKVKDA 417 (606)
T ss_dssp CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT-TTTTTCTTCSEEECTTCCEECCTT
T ss_pred cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH-HHhcCCccCCeEECCCCcCCCccc
Confidence 3332 555556666666666555442 34555555555555555554433 234455555555555555543321
Q ss_pred ccHHHHhcCCCcccccCccc
Q psy13376 204 VDGFAIAMVPQLQCYNNHII 223 (417)
Q Consensus 204 ~~~~~~~~l~~L~~Ld~~~~ 223 (417)
...+..+++|+.|+++.+
T Consensus 418 --~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 418 --QSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp --CCTTTTCTTCCEEECTTC
T ss_pred --chhhhCcccCCEEECCCC
Confidence 012334445555544444
No 35
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=1.3e-18 Score=178.23 Aligned_cols=230 Identities=15% Similarity=0.142 Sum_probs=173.4
Q ss_pred cccccceeeccccccCCCCch--hhhHHHHHhcCCCCCChhhhhcccc--ccccccccccccCCcchhhhhcccccEEEe
Q psy13376 5 TTVDRIKKIGLIKDRAGDEST--LKNLAQVLQNAPAIINEDLLSKKGV--ISENLLSLLQESTNLAEKLQIYKLIKAVNL 80 (417)
Q Consensus 5 ~~~~~l~~l~l~~n~l~dl~~--L~~l~~L~~~~~~~~~~~~l~~~~~--~~~~~~~l~~~~n~i~~l~~ll~~L~~L~L 80 (417)
...++++.++++.|.++++.+ +..+.+|..+. ++.+.+..... .......|.+++|.|..+.. .++|+.|++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~---Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~-~~~L~~L~L 106 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLN---LSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-GPSIETLHA 106 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEE---CTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE-CTTCCEEEC
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEE---eeCCCCCCCcccccCCCCCEEEecCCcCCCCCC-CCCcCEEEC
Confidence 345589999999999998863 55555555554 33332222100 01122355678887776554 488999999
Q ss_pred ecCCCCCCCCcCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCCcccC--Cc-cccccceeEeecCCCCCcC
Q psy13376 81 RIKTLRKIENLWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIEQIQG--LD-TLVNLKVLNLKMNRIETIE 155 (417)
Q Consensus 81 s~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~--~~-~l~~L~~L~Ls~N~i~~l~ 155 (417)
++|.|+.++. ..+++|+.|++++|.++.++ .++.+++|++|++++|.++.++. +. .+++|++|+|++|.|+.++
T Consensus 107 ~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 107 ANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp CSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred cCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 9999988764 35689999999999999875 48899999999999999997543 54 7899999999999999998
Q ss_pred CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccCHHHHHHHHHHH
Q psy13376 156 GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQH 235 (417)
Q Consensus 156 ~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~~~~~~~~~~~~ 235 (417)
+...+++|++|++++|.++.+++ .+..+++|+.|++++|.++.+|. .+..+++|+.|+++.+..... ....+
T Consensus 186 ~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~lp~----~l~~l~~L~~L~l~~N~l~c~--~~~~~ 257 (487)
T 3oja_A 186 GQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLIEK----ALRFSQNLEHFDLRGNGFHCG--TLRDF 257 (487)
T ss_dssp CCCCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTSCCCEECT----TCCCCTTCCEEECTTCCBCHH--HHHHH
T ss_pred ccccCCCCCEEECCCCCCCCCCH--hHcCCCCccEEEecCCcCcccch----hhccCCCCCEEEcCCCCCcCc--chHHH
Confidence 88889999999999999999876 37889999999999999998876 357789999999888764311 22233
Q ss_pred hhhhhHHHHHhH
Q psy13376 236 MYDVRTETLKDL 247 (417)
Q Consensus 236 ~~~l~~L~~l~~ 247 (417)
...+..+..+..
T Consensus 258 ~~~l~~L~~l~~ 269 (487)
T 3oja_A 258 FSKNQRVQTVAK 269 (487)
T ss_dssp HTTCHHHHHHHH
T ss_pred HHhCCCCcEEec
Confidence 445555555544
No 36
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=6.3e-18 Score=152.02 Aligned_cols=142 Identities=20% Similarity=0.260 Sum_probs=125.4
Q ss_pred cccccccCCcchhhhh--cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCC--cCCCCCCccCceeeeeCCCCCc
Q psy13376 56 LSLLQESTNLAEKLQI--YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGV--IENLDQLVCLEKLDLGYNRIEQ 131 (417)
Q Consensus 56 ~~l~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~ 131 (417)
..+.++.|.+..++++ +++|+.|++++|.++.++.+..+++|++|++++|.++. .+.+..+++|++|++++|.++.
T Consensus 47 ~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~ 126 (197)
T 4ezg_A 47 TYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126 (197)
T ss_dssp CEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBG
T ss_pred cEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCc
Confidence 4566888999988877 99999999999999999889999999999999999996 4469999999999999999997
Q ss_pred --ccCCccccccceeEeecCC-CCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCC
Q psy13376 132 --IQGLDTLVNLKVLNLKMNR-IETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCD 200 (417)
Q Consensus 132 --l~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~ 200 (417)
.+.+..+++|++|++++|. ++.++.+..+++|++|++++|.+++++ .+..+++|+.|++++|+|..
T Consensus 127 ~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 127 SILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC----
T ss_pred HhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCcccCC
Confidence 3348899999999999998 999999999999999999999999976 45789999999999999865
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.74 E-value=7.5e-22 Score=199.61 Aligned_cols=141 Identities=22% Similarity=0.389 Sum_probs=69.4
Q ss_pred ccCCcchhhhhcccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCC-CcC--CCCCCccCceeeeeCCCCCccc-C
Q psy13376 61 ESTNLAEKLQIYKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIG-VIE--NLDQLVCLEKLDLGYNRIEQIQ-G 134 (417)
Q Consensus 61 ~~n~i~~l~~ll~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~-~l~--~l~~l~~L~~L~Ls~N~l~~l~-~ 134 (417)
..+.++.++.+.+++++|++++|.|+.+.+ +..+++|++|++++|.+. .++ .|.++++|++|++++|.++.++ .
T Consensus 18 ~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 97 (455)
T 3v47_A 18 INRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG 97 (455)
T ss_dssp CSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT
T ss_pred CCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh
Confidence 333444444434455555555555554421 555555555555555554 332 2555555555555555555442 1
Q ss_pred -CccccccceeEeecCCCCC--cCC--CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCC
Q psy13376 135 -LDTLVNLKVLNLKMNRIET--IEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDK 201 (417)
Q Consensus 135 -~~~l~~L~~L~Ls~N~i~~--l~~--l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~ 201 (417)
|..+++|++|++++|.++. .+. +..+++|++|++++|.++.+.+...+..+++|+.|++++|.+...
T Consensus 98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 5555555555555555544 112 455555555555555555543212244555555555555555443
No 38
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=2.2e-18 Score=168.83 Aligned_cols=216 Identities=16% Similarity=0.180 Sum_probs=118.7
Q ss_pred ccccc-ccceeeccccccCCCCch--hhhHHHHHhcCCCCCChhhhhcccc--c--cccccccccccCCcchhhhh----
Q psy13376 3 IPTTV-DRIKKIGLIKDRAGDEST--LKNLAQVLQNAPAIINEDLLSKKGV--I--SENLLSLLQESTNLAEKLQI---- 71 (417)
Q Consensus 3 ip~~~-~~l~~l~l~~n~l~dl~~--L~~l~~L~~~~~~~~~~~~l~~~~~--~--~~~~~~l~~~~n~i~~l~~l---- 71 (417)
||..+ ++++.+++..|.+++++. +.++.+|..+. +..+.+..... . ......+.++.|++..+..-
T Consensus 46 iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~---L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 122 (353)
T 2z80_A 46 IPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALV---LTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKP 122 (353)
T ss_dssp CCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE---CTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTT
T ss_pred ccccccccCcEEECCCCcCcccCHHHhccCCCCCEEE---CCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCC
Confidence 44433 478888999888887654 44444443333 11111111100 0 01112344555666555432
Q ss_pred cccccEEEeecCCCCCCCC---cCCCcccceEeeeCC-CCCCcC--CCCCCccCceeeeeCCCCCccc-C-Cccccccce
Q psy13376 72 YKLIKAVNLRIKTLRKIEN---LWMMENLVELDLSMN-HIGVIE--NLDQLVCLEKLDLGYNRIEQIQ-G-LDTLVNLKV 143 (417)
Q Consensus 72 l~~L~~L~Ls~N~i~~i~~---l~~l~~L~~L~Ls~N-~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~-~-~~~l~~L~~ 143 (417)
+++|++|++++|.++.++. +..+++|++|++++| .++.++ .+.++++|++|++++|.++.+. . +..+++|++
T Consensus 123 l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 202 (353)
T 2z80_A 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202 (353)
T ss_dssp CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCe
Confidence 5566666666666665543 555666666666666 355443 2556666666666666665542 2 555666666
Q ss_pred eEeecCCCCCcCC--CCCCCCCcEEeccCCccCcchh------------------------------hhhhhCCCCcCEE
Q psy13376 144 LNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLAS------------------------------LVYLRRFKHLGRL 191 (417)
Q Consensus 144 L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~------------------------------~~~l~~l~~L~~L 191 (417)
|++++|.++.++. +..+++|++|++++|.++.++. ...+..+++|+.|
T Consensus 203 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L 282 (353)
T 2z80_A 203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLEL 282 (353)
T ss_dssp EEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEE
T ss_pred ecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEE
Confidence 6666666655542 3345666666666666654320 0134566677777
Q ss_pred eccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376 192 NIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 192 ~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
++++|.++.++. ..+..+++|+.|+++.++
T Consensus 283 ~Ls~N~l~~i~~---~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 283 EFSRNQLKSVPD---GIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ECCSSCCCCCCT---TTTTTCTTCCEEECCSSC
T ss_pred ECCCCCCCccCH---HHHhcCCCCCEEEeeCCC
Confidence 777777776665 234566777777766654
No 39
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.73 E-value=3.2e-21 Score=202.17 Aligned_cols=212 Identities=19% Similarity=0.257 Sum_probs=131.6
Q ss_pred cceeeccccccCCCCch--hhhHHHHHhcCCCCCChhhhhcccc---ccccccccccccCCcchhhhh----cccccEEE
Q psy13376 9 RIKKIGLIKDRAGDEST--LKNLAQVLQNAPAIINEDLLSKKGV---ISENLLSLLQESTNLAEKLQI----YKLIKAVN 79 (417)
Q Consensus 9 ~l~~l~l~~n~l~dl~~--L~~l~~L~~~~~~~~~~~~l~~~~~---~~~~~~~l~~~~n~i~~l~~l----l~~L~~L~ 79 (417)
.++.+++..|.++++++ +..+.+|..+. ++.+.+..++. .......+.++.|++..+... +++|+.|+
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~---l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELD---LTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEE---CTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEE
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEe---ccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEE
Confidence 67788888888887765 44444444333 22222221100 001123445666777665332 67777777
Q ss_pred eecCCCC-CCCC--cCCCcccceEeeeCCCCCCcC----CCCCCccCceeeeeCCCCCcccC--CccccccceeEeecCC
Q psy13376 80 LRIKTLR-KIEN--LWMMENLVELDLSMNHIGVIE----NLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNR 150 (417)
Q Consensus 80 Ls~N~i~-~i~~--l~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~ 150 (417)
+++|.+. .++. +..+++|++|++++|.++.+. .+..+++|++|++++|.++.++. +..+++|++|++++|.
T Consensus 332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred CCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence 7777766 3332 667777777777777777553 36777777777777777766542 6677777777777777
Q ss_pred CCCcC---CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376 151 IETIE---GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 151 i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
++... .+..+++|++|++++|.++..+. ..+..+++|+.|++++|++.+........+..+++|+.|+++.+.
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSE-QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTCT-TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred CCCcccchhhhCcccCCEEECCCCccCCcCH-HHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence 76552 26677777777777777776544 356677777777777777765211011245667777777777665
No 40
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=1.2e-17 Score=158.48 Aligned_cols=165 Identities=19% Similarity=0.244 Sum_probs=142.8
Q ss_pred ccccccCCcchhhh--h--cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCC-CCCcC--CCCCCccCceeeeeCC
Q psy13376 57 SLLQESTNLAEKLQ--I--YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNH-IGVIE--NLDQLVCLEKLDLGYN 127 (417)
Q Consensus 57 ~l~~~~n~i~~l~~--l--l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~-l~~l~--~l~~l~~L~~L~Ls~N 127 (417)
.+.++.|++..+.. + +++|++|++++|.++.+.. +..+++|++|++++|. ++.++ .+..+++|++|++++|
T Consensus 36 ~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n 115 (285)
T 1ozn_A 36 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115 (285)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC
Confidence 34577778877764 2 8899999999999998843 8899999999999997 88884 3889999999999999
Q ss_pred CCCcccC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376 128 RIEQIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN 203 (417)
Q Consensus 128 ~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~ 203 (417)
.++.++. +..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. ..+..+++|+.|++++|.++...+
T Consensus 116 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~ 194 (285)
T 1ozn_A 116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-RAFRGLHSLDRLLLHQNRVAHVHP 194 (285)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECT
T ss_pred cCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH-HHhcCccccCEEECCCCcccccCH
Confidence 9998864 889999999999999999986 38899999999999999999876 467889999999999999988744
Q ss_pred ccHHHHhcCCCcccccCcccCH
Q psy13376 204 VDGFAIAMVPQLQCYNNHIILE 225 (417)
Q Consensus 204 ~~~~~~~~l~~L~~Ld~~~~~~ 225 (417)
..+..+++|+.|+++.+..
T Consensus 195 ---~~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 195 ---HAFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp ---TTTTTCTTCCEEECCSSCC
T ss_pred ---hHccCcccccEeeCCCCcC
Confidence 3567899999999988764
No 41
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=2e-17 Score=154.30 Aligned_cols=169 Identities=23% Similarity=0.296 Sum_probs=142.4
Q ss_pred ccceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhccccccccccccccccCCcchhhhh----cccccEEEeecC
Q psy13376 8 DRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQI----YKLIKAVNLRIK 83 (417)
Q Consensus 8 ~~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~l----l~~L~~L~Ls~N 83 (417)
...+.+++..+.++.++.- +. ..+ ..+.++.|++..+... +++|++|++++|
T Consensus 14 ~~~~~l~~~~~~l~~~p~~-------------~~-~~l----------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 69 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG-------------IP-ADT----------EKLDLQSTGLATLSDATFRGLTKLTWLNLDYN 69 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC-------------CC-TTC----------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCCeEEecCCCCccccCCC-------------CC-CCC----------CEEEccCCCcCccCHhHhcCcccCCEEECCCC
Confidence 3456778888877766531 11 011 2345777778776543 899999999999
Q ss_pred CCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcC--
Q psy13376 84 TLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE-- 155 (417)
Q Consensus 84 ~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~-- 155 (417)
.|+.++. +..+++|++|++++|.++.++. +..+++|++|++++|.|+.++. |..+++|++|+|++|+|+.++
T Consensus 70 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 149 (251)
T 3m19_A 70 QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG 149 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHH
Confidence 9999865 8899999999999999998873 8899999999999999999986 789999999999999999997
Q ss_pred CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCC
Q psy13376 156 GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDK 201 (417)
Q Consensus 156 ~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~ 201 (417)
.+..+++|++|++++|.++.++. ..+..+++|+.|++++|++...
T Consensus 150 ~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 150 AFDKLTNLQTLSLSTNQLQSVPH-GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBCTT
T ss_pred HcCcCcCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCceeCC
Confidence 48899999999999999999876 5678999999999999999876
No 42
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=1.2e-17 Score=153.12 Aligned_cols=145 Identities=22% Similarity=0.338 Sum_probs=119.2
Q ss_pred cccccCCcchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCCcc
Q psy13376 58 LLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIEQI 132 (417)
Q Consensus 58 l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l 132 (417)
+....+.++.++.. .++++.|++++|.|+.++. |..+++|++|+|++|.++.+. .|.++++|++|+|++|.|+.+
T Consensus 16 v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l 95 (220)
T 2v9t_B 16 VDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95 (220)
T ss_dssp EECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC
T ss_pred EEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc
Confidence 34566667766654 6788999999999988864 888889999999999998773 388889999999999999988
Q ss_pred cC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376 133 QG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN 203 (417)
Q Consensus 133 ~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~ 203 (417)
+. |..+++|++|+|++|+|+.++ .+..+++|++|++++|.|+.++. ..+..+++|+.|++++|++.....
T Consensus 96 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCEECSGG
T ss_pred CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH-HHHhCCCCCCEEEeCCCCcCCCCc
Confidence 85 788889999999999998884 58888899999999999988876 467788889999999998876544
No 43
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=3.7e-19 Score=182.37 Aligned_cols=207 Identities=16% Similarity=0.205 Sum_probs=168.2
Q ss_pred ccccceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhccccccccccccccccCCcchhhhh-cccccEEEeecCC
Q psy13376 6 TVDRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQI-YKLIKAVNLRIKT 84 (417)
Q Consensus 6 ~~~~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~ 84 (417)
.+++++.++++.|.+++..++..+.+|..+. ++.+.+..++ .......|.++.|.+..+... +++|+.|++++|.
T Consensus 56 ~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~---Ls~N~l~~l~-~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~ 131 (487)
T 3oja_A 56 PFTKLELLNLSSNVLYETLDLESLSTLRTLD---LNNNYVQELL-VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK 131 (487)
T ss_dssp TCTTCCEEECTTSCCEEEEECTTCTTCCEEE---CCSSEEEEEE-ECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSC
T ss_pred CCCCCCEEEeeCCCCCCCcccccCCCCCEEE---ecCCcCCCCC-CCCCcCEEECcCCcCCCCCccccCCCCEEECCCCC
Confidence 4578999999999999887777777776666 5556666552 223445678999999888776 9999999999999
Q ss_pred CCCCCC--cCCCcccceEeeeCCCCCCcC--CCC-CCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCcC-CCC
Q psy13376 85 LRKIEN--LWMMENLVELDLSMNHIGVIE--NLD-QLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIE-GLD 158 (417)
Q Consensus 85 i~~i~~--l~~l~~L~~L~Ls~N~l~~l~--~l~-~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~-~l~ 158 (417)
++.+++ +..+++|+.|++++|.++.++ .+. .+++|++|+|++|.++.+++...+++|++|+|++|.|+.++ .+.
T Consensus 132 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 211 (487)
T 3oja_A 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQ 211 (487)
T ss_dssp CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGG
T ss_pred CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHhHc
Confidence 999854 788999999999999999754 354 78999999999999999988778999999999999999985 688
Q ss_pred CCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccC
Q psy13376 159 HLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNN 220 (417)
Q Consensus 159 ~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~ 220 (417)
.+++|++|++++|.++.+|. .+..+++|+.|++++|++.+... ...+..++.|+.++.
T Consensus 212 ~l~~L~~L~Ls~N~l~~lp~--~l~~l~~L~~L~l~~N~l~c~~~--~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 212 SAAGVTWISLRNNKLVLIEK--ALRFSQNLEHFDLRGNGFHCGTL--RDFFSKNQRVQTVAK 269 (487)
T ss_dssp GGTTCSEEECTTSCCCEECT--TCCCCTTCCEEECTTCCBCHHHH--HHHHTTCHHHHHHHH
T ss_pred CCCCccEEEecCCcCcccch--hhccCCCCCEEEcCCCCCcCcch--HHHHHhCCCCcEEec
Confidence 99999999999999999876 46889999999999999983211 123445555555443
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.73 E-value=1.2e-17 Score=162.20 Aligned_cols=160 Identities=20% Similarity=0.240 Sum_probs=100.8
Q ss_pred ccccccCCcchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCC--c-C-CCCCCccCceeeeeCCCC
Q psy13376 57 SLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGV--I-E-NLDQLVCLEKLDLGYNRI 129 (417)
Q Consensus 57 ~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~--l-~-~l~~l~~L~~L~Ls~N~l 129 (417)
.+.++.|++..++.. .++|++|++++|.++.++. +..+++|+.|++++|.++. + + .+..+ +|++|++++|.+
T Consensus 106 ~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 106 KLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp EEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred EEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 344555555555444 5566666666666666544 5566666666666666643 1 1 24444 566666666666
Q ss_pred CcccC-CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccH
Q psy13376 130 EQIQG-LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDG 206 (417)
Q Consensus 130 ~~l~~-~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~ 206 (417)
+.+|. +. ++|++|++++|.++.++ .+..+++|++|++++|.++.++. ..+..+++|+.|++++|+++.+|.
T Consensus 185 ~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~lp~--- 258 (332)
T 2ft3_A 185 TGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNKLSRVPA--- 258 (332)
T ss_dssp SSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCSSCCCBCCT---
T ss_pred CccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCCCcCeecCh---
Confidence 65554 22 56777777777777664 46777777777777777777654 355677777777777777777665
Q ss_pred HHHhcCCCcccccCcccC
Q psy13376 207 FAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 207 ~~~~~l~~L~~Ld~~~~~ 224 (417)
.+..+++|+.|+++.+.
T Consensus 259 -~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 259 -GLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp -TGGGCTTCCEEECCSSC
T ss_pred -hhhcCccCCEEECCCCC
Confidence 35667777777776654
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.73 E-value=1.6e-17 Score=161.54 Aligned_cols=164 Identities=16% Similarity=0.201 Sum_probs=129.1
Q ss_pred cccccccCCcchhhhh---cccccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcCC-CCCCccCceeeeeCCCC-
Q psy13376 56 LSLLQESTNLAEKLQI---YKLIKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRI- 129 (417)
Q Consensus 56 ~~l~~~~n~i~~l~~l---l~~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l- 129 (417)
..+.++.|++..++.. +++|++|++++|.++.++. +..+++|++|++++|.++.+|. +..+++|++|++++|++
T Consensus 84 ~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~ 163 (328)
T 4fcg_A 84 VALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPEL 163 (328)
T ss_dssp CEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTC
T ss_pred eEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCc
Confidence 4566777888777653 7888889999888888876 8888889999999988888874 88888899999988654
Q ss_pred CcccC-Cc---------cccccceeEeecCCCCCcC-CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCC
Q psy13376 130 EQIQG-LD---------TLVNLKVLNLKMNRIETIE-GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPV 198 (417)
Q Consensus 130 ~~l~~-~~---------~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l 198 (417)
..+|. +. .+++|++|++++|.++.+| .+..+++|++|++++|.++.++. .+..+++|+.|++++|++
T Consensus 164 ~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~--~l~~l~~L~~L~Ls~n~~ 241 (328)
T 4fcg_A 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP--AIHHLPKLEELDLRGCTA 241 (328)
T ss_dssp CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCG--GGGGCTTCCEEECTTCTT
T ss_pred cccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCch--hhccCCCCCEEECcCCcc
Confidence 45554 33 4888899999999888876 57888889999999998888765 467888899999998877
Q ss_pred CCCCCccHHHHhcCCCcccccCcccC
Q psy13376 199 CDKENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 199 ~~~~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
....+ ..+..+++|+.|+++.+.
T Consensus 242 ~~~~p---~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 242 LRNYP---PIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp CCBCC---CCTTCCCCCCEEECTTCT
T ss_pred hhhhH---HHhcCCCCCCEEECCCCC
Confidence 66433 245678888888888765
No 46
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=3.5e-18 Score=161.56 Aligned_cols=195 Identities=16% Similarity=0.197 Sum_probs=148.7
Q ss_pred Ccccccc-cceeeccccccCCCCch--hhhHHHHHhcCCCCCChhhhhccccccccccccccccCCcchhhh--h--ccc
Q psy13376 2 DIPTTVD-RIKKIGLIKDRAGDEST--LKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQ--I--YKL 74 (417)
Q Consensus 2 ~ip~~~~-~l~~l~l~~n~l~dl~~--L~~l~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~--l--l~~ 74 (417)
.||..++ +++.++++.|.++++.+ +.+ +.++ ..+.++.|++..+.. + +++
T Consensus 21 ~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~----------------l~~L-------~~L~l~~n~l~~~~~~~~~~l~~ 77 (276)
T 2z62_A 21 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFS----------------FPEL-------QVLDLSRCEIQTIEDGAYQSLSH 77 (276)
T ss_dssp SCCSSSCTTCCEEECTTCCCCEECTTTTTT----------------CTTC-------SEEECTTCCCCEECTTTTTTCTT
T ss_pred ccCCCCCCCccEEECCCCcccccCHhHhcc----------------ccCC-------cEEECCCCcCCccCHHHccCCcC
Confidence 3555443 58899999999887653 221 1222 234566777776654 2 788
Q ss_pred ccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCc--ccC-CccccccceeEee
Q psy13376 75 IKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQ--IQG-LDTLVNLKVLNLK 147 (417)
Q Consensus 75 L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~--l~~-~~~l~~L~~L~Ls 147 (417)
|+.|++++|.++.++. +..+++|++|++++|.++.++. +..+++|++|++++|.++. +|. +..+++|++|+++
T Consensus 78 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls 157 (276)
T 2z62_A 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred CCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECC
Confidence 9999999999988763 8889999999999999998864 8889999999999999987 443 8888999999999
Q ss_pred cCCCCCcC--CCCCCCCCc----EEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCc
Q psy13376 148 MNRIETIE--GLDHLEKLE----LFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNH 221 (417)
Q Consensus 148 ~N~i~~l~--~l~~l~~L~----~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~ 221 (417)
+|+++.++ .+..+++|+ .|++++|.++.++. .. ....+|+.|++++|.++.++. ..+..+++|+.|+++
T Consensus 158 ~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~-~~-~~~~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GA-FKEIRLKELALDTNQLKSVPD---GIFDRLTSLQKIWLH 232 (276)
T ss_dssp SSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT-TS-SCSCCEEEEECCSSCCSCCCT---TTTTTCCSCCEEECC
T ss_pred CCCCCcCCHHHhhhhhhccccceeeecCCCcccccCc-cc-cCCCcccEEECCCCceeecCH---hHhcccccccEEEcc
Confidence 99998875 355555555 89999999998765 23 334589999999999998876 355778999999888
Q ss_pred ccC
Q psy13376 222 IIL 224 (417)
Q Consensus 222 ~~~ 224 (417)
.++
T Consensus 233 ~N~ 235 (276)
T 2z62_A 233 TNP 235 (276)
T ss_dssp SSC
T ss_pred CCc
Confidence 654
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.73 E-value=1.5e-17 Score=161.30 Aligned_cols=208 Identities=17% Similarity=0.194 Sum_probs=130.4
Q ss_pred ccceeeccccccCCCCch--hhhHHHHHhcCCCCCChhhhhccc----cccccccccccccCCcchhhhh-cccccEEEe
Q psy13376 8 DRIKKIGLIKDRAGDEST--LKNLAQVLQNAPAIINEDLLSKKG----VISENLLSLLQESTNLAEKLQI-YKLIKAVNL 80 (417)
Q Consensus 8 ~~l~~l~l~~n~l~dl~~--L~~l~~L~~~~~~~~~~~~l~~~~----~~~~~~~~l~~~~n~i~~l~~l-l~~L~~L~L 80 (417)
++++.++++.|.++++.+ +.++.+|..+.. ..+.+.... ........+.++.|++..++.. .++|+.|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L---~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLIL---INNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC---CSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEEC---CCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEEC
Confidence 467778888888887654 444444444331 111111110 0001122445666666665544 667777777
Q ss_pred ecCCCCCCCC--cCCCcccceEeeeCCCCCC--c-C-CCCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCc
Q psy13376 81 RIKTLRKIEN--LWMMENLVELDLSMNHIGV--I-E-NLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETI 154 (417)
Q Consensus 81 s~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~--l-~-~l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l 154 (417)
++|.++.++. +..+++|+.|++++|.++. + + .+..+++|++|++++|.++.+|... .++|++|++++|.++.+
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~ 207 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKV 207 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTSCCCEE
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc-cccCCEEECCCCcCCcc
Confidence 7777776654 6677777777777777753 2 1 2667777777777777777766411 16777777777777766
Q ss_pred C--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376 155 E--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 155 ~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
+ .+..+++|++|++++|.++.++. ..+..+++|+.|++++|+++.+|. .+..+++|+.|+++.+.
T Consensus 208 ~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~lp~----~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 208 DAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLVKVPG----GLADHKYIQVVYLHNNN 274 (330)
T ss_dssp CTGGGTTCTTCCEEECCSSCCCEECT-TTGGGSTTCCEEECCSSCCSSCCT----TTTTCSSCCEEECCSSC
T ss_pred CHHHhcCCCCCCEEECCCCcCceeCh-hhccCCCCCCEEECCCCcCccCCh----hhccCCCcCEEECCCCc
Confidence 3 46777777777777777777654 355677777777777777777665 34567777777776654
No 48
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=1.5e-17 Score=174.90 Aligned_cols=116 Identities=23% Similarity=0.184 Sum_probs=73.1
Q ss_pred cccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccC
Q psy13376 95 ENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQ 174 (417)
Q Consensus 95 ~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~ 174 (417)
++|+.|++++|.++.++.. +++|+.|++++|.++.++.. +++|++|++++|.|+.+| ..+++|++|++++|.|+
T Consensus 181 ~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~ 254 (622)
T 3g06_A 181 SGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLT 254 (622)
T ss_dssp TTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCS
T ss_pred CCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCC
Confidence 3344444444444433321 23444444444444444321 256777777777777776 45677888888888887
Q ss_pred cchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccCH
Q psy13376 175 SLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILE 225 (417)
Q Consensus 175 ~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~~ 225 (417)
.++. .+++|+.|++++|.++.+|. .+..+++|+.|+++.+..
T Consensus 255 ~lp~-----~~~~L~~L~Ls~N~L~~lp~----~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 255 SLPM-----LPSGLLSLSVYRNQLTRLPE----SLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CCCC-----CCTTCCEEECCSSCCCSCCG----GGGGSCTTCEEECCSCCC
T ss_pred cCCc-----ccccCcEEeCCCCCCCcCCH----HHhhccccCEEEecCCCC
Confidence 7664 46788888888888887765 467788888888877664
No 49
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.72 E-value=7.5e-18 Score=167.17 Aligned_cols=209 Identities=17% Similarity=0.211 Sum_probs=119.0
Q ss_pred cccceeeccccccCCCCch--hhhHHHHHhcCCCCCChhhhhccc----cccccccccccccCCcchhhhh----ccccc
Q psy13376 7 VDRIKKIGLIKDRAGDEST--LKNLAQVLQNAPAIINEDLLSKKG----VISENLLSLLQESTNLAEKLQI----YKLIK 76 (417)
Q Consensus 7 ~~~l~~l~l~~n~l~dl~~--L~~l~~L~~~~~~~~~~~~l~~~~----~~~~~~~~l~~~~n~i~~l~~l----l~~L~ 76 (417)
+.+++.+++..+.++.++. +..+++|..+. +..+.+.... ........+.++.|++..+..- +++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~---L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLN---LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEE---CTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEE---CCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 4667777777777777665 44444443333 1111111110 0001123445666777666432 67777
Q ss_pred EEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccCCcccc-------------
Q psy13376 77 AVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLV------------- 139 (417)
Q Consensus 77 ~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~~~~l~------------- 139 (417)
+|++++|.++.++. +..+++|++|++++|.++.++. +..+++|++|++++|.++.++ +..++
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-GGGCTTCSEEECCSSCCS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-cccccccceeeccccccc
Confidence 77777777777765 5677777777777777776643 677777777777777776543 12222
Q ss_pred ---------------------------ccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEe
Q psy13376 140 ---------------------------NLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLN 192 (417)
Q Consensus 140 ---------------------------~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~ 192 (417)
+|+.|++++|.++..+.+..+++|++|++++|.++.+.. ..+..+++|+.|+
T Consensus 200 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~ 278 (390)
T 3o6n_A 200 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY-HPFVKMQRLERLY 278 (390)
T ss_dssp EEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEES-GGGTTCSSCCEEE
T ss_pred ccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcCh-hHccccccCCEEE
Confidence 344444444444444445555666666666666665533 3455666666666
Q ss_pred ccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376 193 IERNPVCDKENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 193 L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
+++|+++.++. ....+++|+.|+++.+.
T Consensus 279 L~~n~l~~~~~----~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 279 ISNNRLVALNL----YGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp CCSSCCCEEEC----SSSCCTTCCEEECCSSC
T ss_pred CCCCcCcccCc----ccCCCCCCCEEECCCCc
Confidence 66666665544 22456666666666554
No 50
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=8.8e-18 Score=155.46 Aligned_cols=163 Identities=14% Similarity=0.185 Sum_probs=138.3
Q ss_pred ccccccCCcchhhhh----cccccEEEeecCC-CCCCCC--cCCCcccceEeeeC-CCCCCcCC--CCCCccCceeeeeC
Q psy13376 57 SLLQESTNLAEKLQI----YKLIKAVNLRIKT-LRKIEN--LWMMENLVELDLSM-NHIGVIEN--LDQLVCLEKLDLGY 126 (417)
Q Consensus 57 ~l~~~~n~i~~l~~l----l~~L~~L~Ls~N~-i~~i~~--l~~l~~L~~L~Ls~-N~l~~l~~--l~~l~~L~~L~Ls~ 126 (417)
.+.++.|++..+..- +++|+.|++++|. ++.++. |..+++|++|++++ |.++.++. |.++++|++|++++
T Consensus 35 ~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~ 114 (239)
T 2xwt_C 35 TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114 (239)
T ss_dssp EEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEE
T ss_pred EEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCC
Confidence 456788888887652 8899999999997 988864 88999999999998 99998873 88999999999999
Q ss_pred CCCCcccCCccccccc---eeEeecC-CCCCcCC--CCCCCCCc-EEeccCCccCcchhhhhhhCCCCcCEEeccCCC-C
Q psy13376 127 NRIEQIQGLDTLVNLK---VLNLKMN-RIETIEG--LDHLEKLE-LFNIAANRIQSLASLVYLRRFKHLGRLNIERNP-V 198 (417)
Q Consensus 127 N~l~~l~~~~~l~~L~---~L~Ls~N-~i~~l~~--l~~l~~L~-~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~-l 198 (417)
|.++.+|.+..+++|+ +|++++| .++.++. +..+++|+ +|++++|.++.++. ..+.. ++|+.|++++|+ +
T Consensus 115 n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~-~~~~~-~~L~~L~L~~n~~l 192 (239)
T 2xwt_C 115 TGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG-YAFNG-TKLDAVYLNKNKYL 192 (239)
T ss_dssp ECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT-TTTTT-CEEEEEECTTCTTC
T ss_pred CCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH-hhcCC-CCCCEEEcCCCCCc
Confidence 9999999888888888 9999999 9998863 88999999 99999999998876 34445 789999999995 8
Q ss_pred CCCCCccHHHHhcC-CCcccccCcccC
Q psy13376 199 CDKENVDGFAIAMV-PQLQCYNNHIIL 224 (417)
Q Consensus 199 ~~~~~~~~~~~~~l-~~L~~Ld~~~~~ 224 (417)
+.++. ..+..+ ++|+.|+++.+.
T Consensus 193 ~~i~~---~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 193 TVIDK---DAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp CEECT---TTTTTCSBCCSEEECTTCC
T ss_pred ccCCH---HHhhccccCCcEEECCCCc
Confidence 88765 345677 899999988765
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=167.00 Aligned_cols=164 Identities=24% Similarity=0.273 Sum_probs=131.1
Q ss_pred ccccccCCcchhhhh----cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeC-C
Q psy13376 57 SLLQESTNLAEKLQI----YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGY-N 127 (417)
Q Consensus 57 ~l~~~~n~i~~l~~l----l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~-N 127 (417)
.|.++.|+|..+..- +++|+.|++++|.++.++. |..+++|++|++++|.++.++. |..+++|++|++++ |
T Consensus 92 ~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~ 171 (440)
T 3zyj_A 92 ILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK 171 (440)
T ss_dssp EEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT
T ss_pred EEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCC
Confidence 456777777776532 7788888888888888765 7788888888888888887764 77888888888887 4
Q ss_pred CCCcccC--CccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCcc
Q psy13376 128 RIEQIQG--LDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVD 205 (417)
Q Consensus 128 ~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 205 (417)
.++.++. |..+++|++|++++|.++.++.+..+++|+.|++++|.++.++. ..+..+++|+.|++++|.++.++.
T Consensus 172 ~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~-- 248 (440)
T 3zyj_A 172 RLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRP-GSFQGLMHLQKLWMIQSQIQVIER-- 248 (440)
T ss_dssp TCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECT--
T ss_pred CcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccCh-hhhccCccCCEEECCCCceeEECh--
Confidence 5666664 78888899999999998888888888899999999999888765 567888899999999998888765
Q ss_pred HHHHhcCCCcccccCcccC
Q psy13376 206 GFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 206 ~~~~~~l~~L~~Ld~~~~~ 224 (417)
..+..+++|+.|+++.+.
T Consensus 249 -~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 249 -NAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp -TSSTTCTTCCEEECTTSC
T ss_pred -hhhcCCCCCCEEECCCCC
Confidence 345678889998888765
No 52
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.72 E-value=4.4e-17 Score=165.61 Aligned_cols=200 Identities=17% Similarity=0.243 Sum_probs=113.6
Q ss_pred cccceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhcccc-ccccccccccccCCcchhhhh-cccccEEEeecCC
Q psy13376 7 VDRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGV-ISENLLSLLQESTNLAEKLQI-YKLIKAVNLRIKT 84 (417)
Q Consensus 7 ~~~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~~~~-~~~~~~~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~ 84 (417)
+++++.++++.|.+++++.+..+.+|..+. +..+.+..+.+ .......+.++.|++..++-. +++|++|++++|.
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~---Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~ 117 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLI---CTSNNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNK 117 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEE---CCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSC
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEE---ccCCcCCeEccccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCc
Confidence 467888888888888887666665555544 22222222210 001123455777777766422 7777888888887
Q ss_pred CCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCC-CCCcccCCccccccceeEeecCCCCCcCCCCCCCCC
Q psy13376 85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYN-RIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKL 163 (417)
Q Consensus 85 i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N-~l~~l~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L 163 (417)
++.++ +..+++|++|++++|.++.++ ++.+++|++|++++| .+..+ ++..+++|++|++++|+++.++ +..+++|
T Consensus 118 l~~l~-~~~l~~L~~L~l~~N~l~~l~-l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L 193 (457)
T 3bz5_A 118 LTKLD-VSQNPLLTYLNCARNTLTEID-VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITELD-VSQNKLL 193 (457)
T ss_dssp CSCCC-CTTCTTCCEEECTTSCCSCCC-CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCCCC-CTTCTTC
T ss_pred CCeec-CCCCCcCCEEECCCCccceec-cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccceec-cccCCCC
Confidence 77764 777777777777777777653 555555555555555 23333 3445555555555555555554 4555555
Q ss_pred cEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCccc
Q psy13376 164 ELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHII 223 (417)
Q Consensus 164 ~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~ 223 (417)
+.|++++|.++.++ +..+++|+.|++++|+++.+| +..+++|+.|+++.+
T Consensus 194 ~~L~l~~N~l~~~~----l~~l~~L~~L~Ls~N~l~~ip------~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 194 NRLNCDTNNITKLD----LNQNIQLTFLDCSSNKLTEID------VTPLTQLTYFDCSVN 243 (457)
T ss_dssp CEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC------CTTCTTCSEEECCSS
T ss_pred CEEECcCCcCCeec----cccCCCCCEEECcCCcccccC------ccccCCCCEEEeeCC
Confidence 55555555555442 244455555555555555543 134445555544443
No 53
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=2.2e-17 Score=151.35 Aligned_cols=146 Identities=22% Similarity=0.287 Sum_probs=116.7
Q ss_pred ccccccCCcchhhhh-cccccEEEeecCCCCCCCC---cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCC
Q psy13376 57 SLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN---LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIE 130 (417)
Q Consensus 57 ~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~---l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~ 130 (417)
.+..+.|.+..++.. .+.++.|++++|.|+.++. |..+++|++|++++|.|+.++. |.++++|++|+|++|.++
T Consensus 15 ~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~ 94 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94 (220)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred EeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccC
Confidence 346677777777655 6677888888888888732 7788888888888888887763 888888888888888888
Q ss_pred cccC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376 131 QIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN 203 (417)
Q Consensus 131 ~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~ 203 (417)
.++. |..+++|++|+|++|+|+.++ .+..+++|++|++++|.|+.+++ ..+..+++|+.|++++|++.....
T Consensus 95 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT-TTTTTCTTCCEEECCSCCEECSGG
T ss_pred ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH-HHhcCCCCCCEEEecCcCCcCCCc
Confidence 8775 788888888888888888874 47888888888888888888754 467788888888888888876554
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=3e-17 Score=166.25 Aligned_cols=164 Identities=24% Similarity=0.234 Sum_probs=117.1
Q ss_pred ccccccCCcchhhhh----cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeC-C
Q psy13376 57 SLLQESTNLAEKLQI----YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGY-N 127 (417)
Q Consensus 57 ~l~~~~n~i~~l~~l----l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~-N 127 (417)
.|.++.|+|..+..- +++|+.|++++|.++.++. |..+++|++|++++|.++.++. |..+++|+.|++++ |
T Consensus 103 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~ 182 (452)
T 3zyi_A 103 VLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK 182 (452)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT
T ss_pred EEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC
Confidence 345666666665422 6667777777777776654 6667777777777777776653 66677777777776 4
Q ss_pred CCCcccC--CccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCcc
Q psy13376 128 RIEQIQG--LDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVD 205 (417)
Q Consensus 128 ~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 205 (417)
.++.++. |..+++|++|++++|+++.++.+..+++|+.|++++|.++.++. ..+..+++|+.|++++|.++.++.
T Consensus 183 ~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~-- 259 (452)
T 3zyi_A 183 KLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRP-GSFHGLSSLKKLWVMNSQVSLIER-- 259 (452)
T ss_dssp TCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECG-GGGTTCTTCCEEECTTSCCCEECT--
T ss_pred CccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCc-ccccCccCCCEEEeCCCcCceECH--
Confidence 5556653 67777888888888888888778888888888888888887755 467788888888888888877654
Q ss_pred HHHHhcCCCcccccCcccC
Q psy13376 206 GFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 206 ~~~~~~l~~L~~Ld~~~~~ 224 (417)
..+..+++|+.|+++.+.
T Consensus 260 -~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 260 -NAFDGLASLVELNLAHNN 277 (452)
T ss_dssp -TTTTTCTTCCEEECCSSC
T ss_pred -HHhcCCCCCCEEECCCCc
Confidence 345677888888877765
No 55
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=3.7e-17 Score=160.91 Aligned_cols=164 Identities=20% Similarity=0.248 Sum_probs=139.6
Q ss_pred ccccccCCcchhhhh-cccccEEEeecCCCCCCCC--cC-CCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCC
Q psy13376 57 SLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LW-MMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIE 130 (417)
Q Consensus 57 ~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~-~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~ 130 (417)
.+..+.+++..++.. .+.++.|++++|.|+.++. +. .+++|+.|+|++|.|+.++. |..+++|++|+|++|+|+
T Consensus 22 ~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~ 101 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101 (361)
T ss_dssp EEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC
Confidence 356777888887765 7789999999999999865 66 89999999999999998873 999999999999999999
Q ss_pred cccC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhh---hCCCCcCEEeccCCCCCCCCC
Q psy13376 131 QIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYL---RRFKHLGRLNIERNPVCDKEN 203 (417)
Q Consensus 131 ~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l---~~l~~L~~L~L~~N~l~~~~~ 203 (417)
.++. |..+++|++|+|++|+|+.++ .|..+++|++|+|++|.|+.++. ..+ ..+++|+.|+|++|+++.++.
T Consensus 102 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNKLKKLPL 180 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEECCSSCCCCCCH
T ss_pred cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCCCCCccCH
Confidence 9885 899999999999999999884 58999999999999999999876 344 578999999999999999875
Q ss_pred ccHHHHhcCCCc--ccccCcccC
Q psy13376 204 VDGFAIAMVPQL--QCYNNHIIL 224 (417)
Q Consensus 204 ~~~~~~~~l~~L--~~Ld~~~~~ 224 (417)
..+..++.+ +.|++..++
T Consensus 181 ---~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 181 ---TDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp ---HHHHHSCHHHHTTEECCSSC
T ss_pred ---HHhhhccHhhcceEEecCCC
Confidence 456677764 667766544
No 56
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=1.1e-16 Score=144.92 Aligned_cols=142 Identities=21% Similarity=0.306 Sum_probs=116.9
Q ss_pred ccccCCcchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCccc
Q psy13376 59 LQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQ 133 (417)
Q Consensus 59 ~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~ 133 (417)
....+.+..++.. .++++.|++++|.++.++. +..+++|++|++++|.++.++. |..+++|++|++++|.++.++
T Consensus 13 ~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 92 (208)
T 2o6s_A 13 ECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92 (208)
T ss_dssp ECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred EecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccC
Confidence 4555566666554 7788999999999988865 7788999999999999988864 788899999999999998887
Q ss_pred C--CccccccceeEeecCCCCCcCC--CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCC
Q psy13376 134 G--LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDK 201 (417)
Q Consensus 134 ~--~~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~ 201 (417)
. +..+++|++|++++|.|+.++. +..+++|++|++++|.++.++. ..+..+++|+.|++++|++...
T Consensus 93 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~ 163 (208)
T 2o6s_A 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWDCT 163 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBCCC
T ss_pred HhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH-HHhccCCCccEEEecCCCeecC
Confidence 5 7888899999999999988863 7888999999999999988776 4567888999999999987653
No 57
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.71 E-value=2.2e-17 Score=166.72 Aligned_cols=108 Identities=25% Similarity=0.328 Sum_probs=59.6
Q ss_pred CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCc
Q psy13376 113 LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188 (417)
Q Consensus 113 l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L 188 (417)
+..+++|++|++++|.++.++. |..+++|++|++++|.++.++ .+..+++|++|++++|.++.+++ ..+..+++|
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L 373 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD-QSFLGLPNL 373 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT-TTTTTCTTC
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh-hhccccccc
Confidence 4455555555555555554432 555555666666666555542 34555666666666666655533 344556666
Q ss_pred CEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376 189 GRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 189 ~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
++|++++|+++.++. ..+..+++|+.|+++.+.
T Consensus 374 ~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 374 KELALDTNQLKSVPD---GIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CEEECCSSCCSCCCT---TTTTTCTTCCEEECCSSC
T ss_pred cEEECCCCccccCCH---hHhccCCcccEEEccCCC
Confidence 666666666665554 233455666666655443
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=9.1e-17 Score=163.13 Aligned_cols=137 Identities=19% Similarity=0.253 Sum_probs=73.4
Q ss_pred ccccccCCcchhhhh--cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC
Q psy13376 57 SLLQESTNLAEKLQI--YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG 134 (417)
Q Consensus 57 ~l~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~ 134 (417)
.+.++.|++..++.+ +++|++|++++|.++.++.. .++|++|++++|.++.++.++.+++|++|++++|.++.+|.
T Consensus 135 ~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~ 212 (454)
T 1jl5_A 135 YLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPD 212 (454)
T ss_dssp EEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCC
T ss_pred EEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCC
Confidence 334455555544433 55555555555555554432 13555555555555555555555555555555555555544
Q ss_pred CccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCC
Q psy13376 135 LDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKE 202 (417)
Q Consensus 135 ~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~ 202 (417)
+. ++|++|++++|.++.+|.+..+++|++|++++|+++.++. .+++|+.|++++|.++.++
T Consensus 213 ~~--~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~-----~~~~L~~L~l~~N~l~~l~ 273 (454)
T 1jl5_A 213 LP--LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD-----LPPSLEALNVRDNYLTDLP 273 (454)
T ss_dssp CC--TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS-----CCTTCCEEECCSSCCSCCC
T ss_pred Cc--CcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc-----cccccCEEECCCCcccccC
Confidence 22 3556666666666655556666666666666666665543 1245555555555555443
No 59
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.70 E-value=3.6e-17 Score=162.22 Aligned_cols=206 Identities=17% Similarity=0.203 Sum_probs=113.9
Q ss_pred cccceeeccccccCCCCch--hhhHHHHHhcCCCCCChhhhhcccc--c--cccccccccccCCcchhhh--h--ccccc
Q psy13376 7 VDRIKKIGLIKDRAGDEST--LKNLAQVLQNAPAIINEDLLSKKGV--I--SENLLSLLQESTNLAEKLQ--I--YKLIK 76 (417)
Q Consensus 7 ~~~l~~l~l~~n~l~dl~~--L~~l~~L~~~~~~~~~~~~l~~~~~--~--~~~~~~l~~~~n~i~~l~~--l--l~~L~ 76 (417)
+++++.+++..|.++.+.+ +.++.+|..+. +..+.+..++. . ......+.++.|++..+.. + +++|+
T Consensus 92 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~---L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 168 (390)
T 3o6n_A 92 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV---LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE---CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE---CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCC
Confidence 4566777777777766643 34444443333 11111111100 0 0111234566666665543 2 56667
Q ss_pred EEEeecCCCCCCCCcCCC----------------------------------------cccceEeeeCCCCCCcCCCCCC
Q psy13376 77 AVNLRIKTLRKIENLWMM----------------------------------------ENLVELDLSMNHIGVIENLDQL 116 (417)
Q Consensus 77 ~L~Ls~N~i~~i~~l~~l----------------------------------------~~L~~L~Ls~N~l~~l~~l~~l 116 (417)
.|++++|.++.++ +..+ ++|+.|++++|.++..+.+..+
T Consensus 169 ~L~l~~n~l~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l 247 (390)
T 3o6n_A 169 NLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY 247 (390)
T ss_dssp EEECCSSCCSBCC-GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGC
T ss_pred EEECCCCcCCccc-cccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCC
Confidence 7777766666542 1222 2455555555555555455566
Q ss_pred ccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcC-CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEec
Q psy13376 117 VCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE-GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNI 193 (417)
Q Consensus 117 ~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L 193 (417)
++|++|++++|.++.++. +..+++|++|++++|+++.++ .+..+++|++|++++|.++.++. .+..+++|+.|++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~l~~L~~L~L 325 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER--NQPQFDRLENLYL 325 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGG--GHHHHTTCSEEEC
T ss_pred CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCc--cccccCcCCEEEC
Confidence 666666666666665532 666666666666666666664 24456666666666666666554 3455666667777
Q ss_pred cCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376 194 ERNPVCDKENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 194 ~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
++|+++.++. ..+++|+.|+++.+.
T Consensus 326 ~~N~i~~~~~------~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 326 DHNSIVTLKL------STHHTLKNLTLSHND 350 (390)
T ss_dssp CSSCCCCCCC------CTTCCCSEEECCSSC
T ss_pred CCCccceeCc------hhhccCCEEEcCCCC
Confidence 7776666542 456666666666655
No 60
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.69 E-value=6.5e-17 Score=156.75 Aligned_cols=213 Identities=16% Similarity=0.198 Sum_probs=157.9
Q ss_pred ccccceeeccccccCCCCc--hhhhHHHHHhcCCCCCChhhhhccc-cccccccccccccCCcchhhhh----cccccEE
Q psy13376 6 TVDRIKKIGLIKDRAGDES--TLKNLAQVLQNAPAIINEDLLSKKG-VISENLLSLLQESTNLAEKLQI----YKLIKAV 78 (417)
Q Consensus 6 ~~~~l~~l~l~~n~l~dl~--~L~~l~~L~~~~~~~~~~~~l~~~~-~~~~~~~~l~~~~n~i~~l~~l----l~~L~~L 78 (417)
.+++++.+++..|.++.+. .+.++.+|..+. +..+.+..++ ........+.++.|++..+... +++|+.|
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~---Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 150 (330)
T 1xku_A 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLY---LSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 150 (330)
T ss_dssp TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE---CCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEE
T ss_pred cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE---CCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEE
Confidence 4578899999999999873 355555555554 3333333221 0112334567888888877653 8899999
Q ss_pred EeecCCCCC--C--CCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCC
Q psy13376 79 NLRIKTLRK--I--ENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIE 152 (417)
Q Consensus 79 ~Ls~N~i~~--i--~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~ 152 (417)
++++|.++. + ..+..+++|++|++++|.++.++... .++|++|++++|.++.++. +..+++|++|++++|.++
T Consensus 151 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 229 (330)
T 1xku_A 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229 (330)
T ss_dssp ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc-cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence 999999974 2 23888999999999999999887521 2789999999999998753 888999999999999998
Q ss_pred CcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHH---HhcCCCcccccCcccC
Q psy13376 153 TIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFA---IAMVPQLQCYNNHIIL 224 (417)
Q Consensus 153 ~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~---~~~l~~L~~Ld~~~~~ 224 (417)
.++ .+..+++|++|++++|.++.++. .+..+++|+.|++++|+++.++...... ....+.++.+++..++
T Consensus 230 ~~~~~~~~~l~~L~~L~L~~N~l~~lp~--~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 230 AVDNGSLANTPHLRELHLNNNKLVKVPG--GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp EECTTTGGGSTTCCEEECCSSCCSSCCT--TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred eeChhhccCCCCCCEEECCCCcCccCCh--hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence 875 48889999999999999998875 4678899999999999999877521100 0124667777776655
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=2.5e-17 Score=157.90 Aligned_cols=166 Identities=17% Similarity=0.233 Sum_probs=137.9
Q ss_pred cccccccCCcchhh----hh--cccccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcC---CCCCCccCceeeee
Q psy13376 56 LSLLQESTNLAEKL----QI--YKLIKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIE---NLDQLVCLEKLDLG 125 (417)
Q Consensus 56 ~~l~~~~n~i~~l~----~l--l~~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls 125 (417)
..+.++.|++..+. .. +++|++|++++|.++.++. +..+++|++|++++|.++.++ .+..+++|++|+++
T Consensus 55 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 134 (306)
T 2z66_A 55 TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 134 (306)
T ss_dssp SEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECT
T ss_pred CEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECC
Confidence 34567888887552 22 7889999999999988865 888999999999999998775 38889999999999
Q ss_pred CCCCCcccC--CccccccceeEeecCCCCC--cC-CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCC
Q psy13376 126 YNRIEQIQG--LDTLVNLKVLNLKMNRIET--IE-GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCD 200 (417)
Q Consensus 126 ~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~--l~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~ 200 (417)
+|.++.+.. +..+++|++|++++|.++. ++ .+..+++|++|++++|.++.++. ..+..+++|+.|++++|.++.
T Consensus 135 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp TSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCSB
T ss_pred CCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH-HHhcCCCCCCEEECCCCccCc
Confidence 999986653 8889999999999999986 44 58889999999999999998755 467889999999999999998
Q ss_pred CCCccHHHHhcCCCcccccCcccCH
Q psy13376 201 KENVDGFAIAMVPQLQCYNNHIILE 225 (417)
Q Consensus 201 ~~~~~~~~~~~l~~L~~Ld~~~~~~ 225 (417)
.+. ..+..+++|+.|+++.+..
T Consensus 214 ~~~---~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 214 LDT---FPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp CCS---GGGTTCTTCCEEECTTSCC
T ss_pred cCh---hhccCcccCCEeECCCCCC
Confidence 876 3467789999999887763
No 62
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1.9e-18 Score=180.22 Aligned_cols=201 Identities=23% Similarity=0.347 Sum_probs=151.7
Q ss_pred ccccceeeccccccCCCCch-hhhHHHHHhcCCCCCChhh-hhccccccccccccccccCCcchhhhh---cccccEEE-
Q psy13376 6 TVDRIKKIGLIKDRAGDEST-LKNLAQVLQNAPAIINEDL-LSKKGVISENLLSLLQESTNLAEKLQI---YKLIKAVN- 79 (417)
Q Consensus 6 ~~~~l~~l~l~~n~l~dl~~-L~~l~~L~~~~~~~~~~~~-l~~~~~~~~~~~~l~~~~n~i~~l~~l---l~~L~~L~- 79 (417)
+.++++.++++.|+++.++. +.+|.+|..+.+ +.+. +..+.... ...+.....+.. +++|+.|+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l---~~n~~l~~l~~ll-------~~~~~~~~~~~~l~~l~~L~~L~~ 416 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEP---ENKWCLLTIILLM-------RALDPLLYEKETLQYFSTLKAVDP 416 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHH-------HHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhcc---ccchhhhhHHHHH-------HhcccccCCHHHHHHHHhcccCcc
Confidence 45678889999999988774 777888888773 2221 11110000 000111111111 44444444
Q ss_pred -------------eecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC-CccccccceeE
Q psy13376 80 -------------LRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG-LDTLVNLKVLN 145 (417)
Q Consensus 80 -------------Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~-~~~l~~L~~L~ 145 (417)
+++|.++.++. ..|+.|++++|.++.+|.++.+++|+.|+|++|.|+.+|. ++.+++|+.|+
T Consensus 417 l~~n~~~~L~~l~l~~n~i~~l~~----~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 492 (567)
T 1dce_A 417 MRAAYLDDLRSKFLLENSVLKMEY----ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ 492 (567)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHH----TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEE
T ss_pred hhhcccchhhhhhhhcccccccCc----cCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEE
Confidence 44444444322 2589999999999999999999999999999999999986 99999999999
Q ss_pred eecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccC
Q psy13376 146 LKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNN 220 (417)
Q Consensus 146 Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~ 220 (417)
|++|.|+.+|.+..+++|++|++++|.|+.+.....+..+++|+.|++++|+++..+++.......+|+|+.||+
T Consensus 493 Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 493 ASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999999999999999999999999999841246789999999999999999998877778888999999863
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.69 E-value=1.3e-16 Score=162.03 Aligned_cols=141 Identities=21% Similarity=0.268 Sum_probs=112.8
Q ss_pred cccccccCCcchhhhhcccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCC
Q psy13376 56 LSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGL 135 (417)
Q Consensus 56 ~~l~~~~n~i~~l~~ll~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~ 135 (417)
..+.++.|++..+....++|++|++++|.++.++.++.+++|++|++++|+++.+|.. .++|++|++++|.++.+|.+
T Consensus 114 ~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~~~ 191 (454)
T 1jl5_A 114 KSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELPEL 191 (454)
T ss_dssp CEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCC
T ss_pred cEEECCCCccCcccCCCCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCccc
Confidence 3455677777766555678888888888888887788888888888888888877653 35888888888888888888
Q ss_pred ccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376 136 DTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN 203 (417)
Q Consensus 136 ~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~ 203 (417)
..+++|++|++++|.++.++.+ .++|++|++++|.++.++. +..+++|+.|++++|.++.++.
T Consensus 192 ~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~n~l~~lp~---~~~l~~L~~L~l~~N~l~~l~~ 254 (454)
T 1jl5_A 192 QNLPFLTAIYADNNSLKKLPDL--PLSLESIVAGNNILEELPE---LQNLPFLTTIYADNNLLKTLPD 254 (454)
T ss_dssp TTCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSSCCC---CTTCTTCCEEECCSSCCSSCCS
T ss_pred cCCCCCCEEECCCCcCCcCCCC--cCcccEEECcCCcCCcccc---cCCCCCCCEEECCCCcCCcccc
Confidence 8888888888888888887653 2588899999998887764 5788999999999999988765
No 64
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=1.6e-16 Score=145.57 Aligned_cols=143 Identities=24% Similarity=0.289 Sum_probs=127.7
Q ss_pred cEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCCcccC--CccccccceeEeecCC
Q psy13376 76 KAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNR 150 (417)
Q Consensus 76 ~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~ 150 (417)
+.+++++++++.+|. +. ++++.|++++|.|+.++ .|..+++|++|+|++|.|+.+.. |..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 678999999999986 43 78999999999999887 48999999999999999998853 9999999999999999
Q ss_pred CCCcCC--CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376 151 IETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 151 i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
|+.++. |..+++|++|++++|.|+.++. ..+..+++|+.|+|++|.++.++. ..+..+++|+.|+++.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIAK---GTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSSC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEECH---HHHhCCCCCCEEEeCCCC
Confidence 999974 7899999999999999999876 578899999999999999999876 346778999999988765
No 65
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=3.3e-17 Score=171.90 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=40.6
Q ss_pred cccccCCcchhhhh----cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCC
Q psy13376 58 LLQESTNLAEKLQI----YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRI 129 (417)
Q Consensus 58 l~~~~n~i~~l~~l----l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l 129 (417)
|.+++|.+..+..- +++|+.|++++|.++.++. |..+++|++|++++|.++.+++ +.++++|++|++++|.+
T Consensus 104 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 183 (597)
T 3oja_B 104 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC
Confidence 34555555554431 5556666666666665544 4555666666666666555432 55555555555555555
Q ss_pred Cc
Q psy13376 130 EQ 131 (417)
Q Consensus 130 ~~ 131 (417)
+.
T Consensus 184 ~~ 185 (597)
T 3oja_B 184 TH 185 (597)
T ss_dssp SB
T ss_pred CC
Confidence 43
No 66
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=3.3e-17 Score=171.89 Aligned_cols=207 Identities=15% Similarity=0.185 Sum_probs=113.7
Q ss_pred cccceeeccccccCCCCc--hhhhHHHHHhcCCCCCChhhhhcccc----ccccccccccccCCcchhhhh----ccccc
Q psy13376 7 VDRIKKIGLIKDRAGDES--TLKNLAQVLQNAPAIINEDLLSKKGV----ISENLLSLLQESTNLAEKLQI----YKLIK 76 (417)
Q Consensus 7 ~~~l~~l~l~~n~l~dl~--~L~~l~~L~~~~~~~~~~~~l~~~~~----~~~~~~~l~~~~n~i~~l~~l----l~~L~ 76 (417)
+++++.+++..|.++++. .+..+.+|..+. +..+.+..+.. .......|.+++|.+..++.- +++|+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~---L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLY---MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEE---CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEE---CCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence 456777777777777654 244444444333 11111111100 001123455777777766542 67777
Q ss_pred EEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcC-------------------------------------------
Q psy13376 77 AVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIE------------------------------------------- 111 (417)
Q Consensus 77 ~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~------------------------------------------- 111 (417)
.|++++|.++.+++ +..+++|++|++++|.++.++
T Consensus 151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~ 230 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV 230 (597)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC
T ss_pred EEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccccccccc
Confidence 77777777777653 667777777777777666432
Q ss_pred ------------------CCCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcC-CCCCCCCCcEEeccC
Q psy13376 112 ------------------NLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE-GLDHLEKLELFNIAA 170 (417)
Q Consensus 112 ------------------~l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~ 170 (417)
.+..+++|+.|++++|.++.+++ |..+++|+.|+|++|.++.++ .+..+++|++|++++
T Consensus 231 ~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 231 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSH 310 (597)
T ss_dssp CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCS
T ss_pred CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCC
Confidence 13334455555555555554422 455555555555555555554 233455566666666
Q ss_pred CccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376 171 NRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 171 N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
|.++.++. .+..+++|+.|++++|+++.++. ..+++|+.|+++.++
T Consensus 311 N~l~~i~~--~~~~l~~L~~L~L~~N~l~~~~~------~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 311 NHLLHVER--NQPQFDRLENLYLDHNSIVTLKL------STHHTLKNLTLSHND 356 (597)
T ss_dssp SCCCCCGG--GHHHHTTCSEEECCSSCCCCCCC------CTTCCCSEEECCSSC
T ss_pred CCCCccCc--ccccCCCCCEEECCCCCCCCcCh------hhcCCCCEEEeeCCC
Confidence 65555543 23455566666666666655542 456677777766655
No 67
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.68 E-value=1.8e-16 Score=161.13 Aligned_cols=186 Identities=19% Similarity=0.263 Sum_probs=146.0
Q ss_pred ccccceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhcccc-ccccccccccccCCcchhhhh-cccccEEEeecC
Q psy13376 6 TVDRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGV-ISENLLSLLQESTNLAEKLQI-YKLIKAVNLRIK 83 (417)
Q Consensus 6 ~~~~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~~~~-~~~~~~~l~~~~n~i~~l~~l-l~~L~~L~Ls~N 83 (417)
.+++++.++++.|.++.++ +..+.+|..+. +..+.+....+ .......+.++.|++..++-. +++|+.|++++|
T Consensus 62 ~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~---Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTLD-LSQNTNLTYLA---CDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARN 137 (457)
T ss_dssp GCTTCSEEECCSSCCSCCC-CTTCTTCSEEE---CCSSCCSCCCCTTCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTS
T ss_pred ccCCCCEEEccCCcCCeEc-cccCCCCCEEE---CcCCCCceeecCCCCcCCEEECCCCcCCeecCCCCCcCCEEECCCC
Confidence 3578889999999999874 66655555544 22222222210 011223567888999887522 899999999999
Q ss_pred CCCCCCCcCCCcccceEeeeCC-CCCCcCCCCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCcCCCCCCCC
Q psy13376 84 TLRKIENLWMMENLVELDLSMN-HIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEK 162 (417)
Q Consensus 84 ~i~~i~~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~ 162 (417)
.++.++ +..+++|++|++++| .++.+ .+..+++|++|++++|+++.++ +..+++|+.|++++|.++.++ +..+++
T Consensus 138 ~l~~l~-l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~~-l~~l~~ 213 (457)
T 3bz5_A 138 TLTEID-VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLD-LNQNIQ 213 (457)
T ss_dssp CCSCCC-CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCCC-CTTCTT
T ss_pred ccceec-cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCeec-cccCCC
Confidence 999984 888999999999999 55555 5788999999999999999987 888899999999999999884 888999
Q ss_pred CcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376 163 LELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN 203 (417)
Q Consensus 163 L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~ 203 (417)
|++|++++|+++.+| +..+++|+.|++++|+++..+.
T Consensus 214 L~~L~Ls~N~l~~ip----~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 214 LTFLDCSSNKLTEID----VTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp CSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCCC
T ss_pred CCEEECcCCcccccC----ccccCCCCEEEeeCCcCCCcCH
Confidence 999999999999875 4788999999999999988764
No 68
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.68 E-value=3.8e-19 Score=160.17 Aligned_cols=157 Identities=24% Similarity=0.341 Sum_probs=133.2
Q ss_pred ccEEEeecC--CCCCCCC-cCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC-CccccccceeEeecCC
Q psy13376 75 IKAVNLRIK--TLRKIEN-LWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG-LDTLVNLKVLNLKMNR 150 (417)
Q Consensus 75 L~~L~Ls~N--~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~-~~~l~~L~~L~Ls~N~ 150 (417)
++...+.+. .++.++. +..+++|++|++++|.++.++.+..+++|++|++++|.++.+|. +..+++|++|++++|+
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~ 104 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ 104 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc
Confidence 444444443 4455543 78899999999999999999888899999999999999999987 6677999999999999
Q ss_pred CCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCC-------CCccHHHHhcCCCcccccCccc
Q psy13376 151 IETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDK-------ENVDGFAIAMVPQLQCYNNHII 223 (417)
Q Consensus 151 i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~-------~~~~~~~~~~l~~L~~Ld~~~~ 223 (417)
++.++.+..+++|++|++++|.++.++.+..+..+++|++|++++|++++. ..|....+..+++|+.||...+
T Consensus 105 l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i 184 (198)
T 1ds9_A 105 IASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPV 184 (198)
T ss_dssp CCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGG
T ss_pred CCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCccc
Confidence 999988888999999999999999987766788999999999999999765 3455567889999999999999
Q ss_pred CHHHHHHH
Q psy13376 224 LEDERRTA 231 (417)
Q Consensus 224 ~~~~~~~~ 231 (417)
...++..+
T Consensus 185 ~~~e~~~a 192 (198)
T 1ds9_A 185 DVDEREQA 192 (198)
T ss_dssp TTTTTTHH
T ss_pred CHHHHHHH
Confidence 88777666
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=4.2e-17 Score=157.19 Aligned_cols=159 Identities=18% Similarity=0.124 Sum_probs=125.7
Q ss_pred ccccccCCcchhhhh---c-----ccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCc---C-C--CCCCccCc
Q psy13376 57 SLLQESTNLAEKLQI---Y-----KLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVI---E-N--LDQLVCLE 120 (417)
Q Consensus 57 ~l~~~~n~i~~l~~l---l-----~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l---~-~--l~~l~~L~ 120 (417)
.+.++.|++..++.. + ++|++|++++|.++.++. +..+++|++|++++|++... + . +..+++|+
T Consensus 125 ~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~ 204 (312)
T 1wwl_A 125 ILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204 (312)
T ss_dssp EEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCC
T ss_pred EEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCC
Confidence 456777888765322 3 889999999999998863 88899999999999987642 2 2 37889999
Q ss_pred eeeeeCCCCCcccC-----CccccccceeEeecCCCCCcC---CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEe
Q psy13376 121 KLDLGYNRIEQIQG-----LDTLVNLKVLNLKMNRIETIE---GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLN 192 (417)
Q Consensus 121 ~L~Ls~N~l~~l~~-----~~~l~~L~~L~Ls~N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~ 192 (417)
+|++++|+++.++. +..+++|++|++++|.++..+ .+..+++|++|++++|.|+.+|. .+. ++|+.|+
T Consensus 205 ~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~--~~~--~~L~~L~ 280 (312)
T 1wwl_A 205 VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK--GLP--AKLSVLD 280 (312)
T ss_dssp EEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCS--SCC--SEEEEEE
T ss_pred EEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhh--hcc--CCceEEE
Confidence 99999999986542 456789999999999998753 46678899999999999998776 222 7899999
Q ss_pred ccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376 193 IERNPVCDKENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 193 L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
+++|++++.|. +..+++|+.|+++.+.
T Consensus 281 Ls~N~l~~~p~-----~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 281 LSYNRLDRNPS-----PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCSSCCCSCCC-----TTTSCEEEEEECTTCT
T ss_pred CCCCCCCCChh-----HhhCCCCCEEeccCCC
Confidence 99999998864 5678899999887764
No 70
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.68 E-value=7.9e-17 Score=156.39 Aligned_cols=166 Identities=18% Similarity=0.153 Sum_probs=120.7
Q ss_pred ccccccccCCcchhhh--h--cccccEEEeecCCCCC--C-C-CcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeC
Q psy13376 55 LLSLLQESTNLAEKLQ--I--YKLIKAVNLRIKTLRK--I-E-NLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGY 126 (417)
Q Consensus 55 ~~~l~~~~n~i~~l~~--l--l~~L~~L~Ls~N~i~~--i-~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~ 126 (417)
...+.++.|++..+.. + +++|+.|++++|.++. + + .+..+ +|++|++++|.++.+|.- -.++|++|++++
T Consensus 125 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~-~~~~L~~L~l~~ 202 (332)
T 2ft3_A 125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKD-LPETLNELHLDH 202 (332)
T ss_dssp CCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSS-SCSSCSCCBCCS
T ss_pred CCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcc-ccCCCCEEECCC
Confidence 3456788888888765 3 8899999999999974 2 2 26666 888888888888887641 126788888888
Q ss_pred CCCCcccC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCC
Q psy13376 127 NRIEQIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKE 202 (417)
Q Consensus 127 N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~ 202 (417)
|.++.++. +..+++|++|++++|.++.++ .+..+++|++|++++|+++.+|. .+..+++|+.|++++|+++.++
T Consensus 203 n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~--~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA--GLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp SCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT--TGGGCTTCCEEECCSSCCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh--hhhcCccCCEEECCCCCCCccC
Confidence 88887763 778888888888888888775 37778888888888888887765 4677888888888888888766
Q ss_pred CccHHH---HhcCCCcccccCcccC
Q psy13376 203 NVDGFA---IAMVPQLQCYNNHIIL 224 (417)
Q Consensus 203 ~~~~~~---~~~l~~L~~Ld~~~~~ 224 (417)
...... ....+.|+.+++..++
T Consensus 281 ~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 281 VNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp TTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred hhHccccccccccccccceEeecCc
Confidence 411100 0114566777766554
No 71
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=1.3e-16 Score=139.34 Aligned_cols=132 Identities=25% Similarity=0.239 Sum_probs=103.3
Q ss_pred cccccEEEeecCCCC--CCCC-cCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCc-ccC-CccccccceeEe
Q psy13376 72 YKLIKAVNLRIKTLR--KIEN-LWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQ-IQG-LDTLVNLKVLNL 146 (417)
Q Consensus 72 l~~L~~L~Ls~N~i~--~i~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-l~~-~~~l~~L~~L~L 146 (417)
.++++.|++++|.++ .++. +..+++|++|++++|.++.++.+..+++|++|++++|.++. ++. +..+++|++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 577888888888887 6666 57888888888888888877668888888888888888887 554 555888888888
Q ss_pred ecCCCCCcC---CCCCCCCCcEEeccCCccCcchhh--hhhhCCCCcCEEeccCCCCCCCCC
Q psy13376 147 KMNRIETIE---GLDHLEKLELFNIAANRIQSLASL--VYLRRFKHLGRLNIERNPVCDKEN 203 (417)
Q Consensus 147 s~N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 203 (417)
++|.|+.++ .+..+++|++|++++|.++.++.. ..+..+++|+.|++++|.+...+.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 888888764 467788888888888888876641 256778888888888888777664
No 72
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=1.7e-16 Score=138.69 Aligned_cols=134 Identities=23% Similarity=0.284 Sum_probs=120.3
Q ss_pred CCcccceEeeeCCCCC--CcCC-CCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCC-cCC-CCCCCCCcEEe
Q psy13376 93 MMENLVELDLSMNHIG--VIEN-LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIET-IEG-LDHLEKLELFN 167 (417)
Q Consensus 93 ~l~~L~~L~Ls~N~l~--~l~~-l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~-l~~-l~~l~~L~~L~ 167 (417)
..++|+.|++++|.++ .++. +..+++|++|++++|.++.++.+..+++|++|++++|.++. ++. +..+++|++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 4578999999999999 7876 68999999999999999998779999999999999999998 554 45699999999
Q ss_pred ccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccCHH
Q psy13376 168 IAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILED 226 (417)
Q Consensus 168 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~~~ 226 (417)
+++|.+++++.+..+..+++|++|++++|+++..+.|+...+..+++|+.|+++.+...
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 99999999876567899999999999999999999877778899999999999888643
No 73
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=4.3e-16 Score=143.53 Aligned_cols=144 Identities=24% Similarity=0.302 Sum_probs=127.7
Q ss_pred ccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCC
Q psy13376 75 IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNR 150 (417)
Q Consensus 75 L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~ 150 (417)
-+.++.+++.++.+|. .-.++|++|++++|.++.++. |..+++|++|+|++|+|+.++. |..+++|++|+|++|+
T Consensus 21 ~~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 5679999999999986 123899999999999998853 8999999999999999999985 8899999999999999
Q ss_pred CCCcCC--CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376 151 IETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 151 i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
|+.++. +..+++|++|++++|+|+.++. .+..+++|+.|++++|.++.++. ..+..+++|+.|++..+.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPR--GIERLTHLTHLALDQNQLKSIPH---GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCT--TGGGCTTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECTTSC
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCc--ccccCCCCCEEECCCCcCCccCH---HHHhCCCCCCEEEeeCCC
Confidence 999974 7899999999999999999875 56899999999999999999876 356788999999987765
No 74
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.67 E-value=1.3e-16 Score=166.85 Aligned_cols=144 Identities=25% Similarity=0.293 Sum_probs=122.2
Q ss_pred cccCCcchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC
Q psy13376 60 QESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG 134 (417)
Q Consensus 60 ~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~ 134 (417)
....+++.++.- .+++++|+|++|.|+.+++ |.++++|++|+|++|+|+.+++ |.++++|++|+|++|+|+.++.
T Consensus 38 c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 38 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp CTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 344456666544 5689999999999999864 8999999999999999998864 8999999999999999998885
Q ss_pred --CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376 135 --LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN 203 (417)
Q Consensus 135 --~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~ 203 (417)
|.++++|++|+|++|+++.++ .|+++++|++|++++|.++.++....+..+++|++|++++|+++.++.
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 889999999999999999986 488999999999999999876544567889999999999999988765
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=153.76 Aligned_cols=160 Identities=16% Similarity=0.128 Sum_probs=128.0
Q ss_pred cccccccCCcchh----hhh----cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCC---cC---CCCCCccC
Q psy13376 56 LSLLQESTNLAEK----LQI----YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGV---IE---NLDQLVCL 119 (417)
Q Consensus 56 ~~l~~~~n~i~~l----~~l----l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~---l~---~l~~l~~L 119 (417)
..+.++.|++... ... +++|++|++++|.++.++. +..+++|++|++++|++.. ++ .+..+++|
T Consensus 120 ~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L 199 (310)
T 4glp_A 120 SSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAI 199 (310)
T ss_dssp SSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCC
T ss_pred CEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCC
Confidence 3456777887752 222 8899999999999988864 8899999999999999764 32 24788999
Q ss_pred ceeeeeCCCCCcccC-----CccccccceeEeecCCCCCc-C-CCCCC---CCCcEEeccCCccCcchhhhhhhCCCCcC
Q psy13376 120 EKLDLGYNRIEQIQG-----LDTLVNLKVLNLKMNRIETI-E-GLDHL---EKLELFNIAANRIQSLASLVYLRRFKHLG 189 (417)
Q Consensus 120 ~~L~Ls~N~l~~l~~-----~~~l~~L~~L~Ls~N~i~~l-~-~l~~l---~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~ 189 (417)
++|++++|+++.++. +..+++|++|+|++|.++.+ | .+..+ ++|++|++++|+|+.+|. .+ .++|+
T Consensus 200 ~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~--~~--~~~L~ 275 (310)
T 4glp_A 200 QNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK--GL--PAKLR 275 (310)
T ss_dssp CSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS--CC--CSCCS
T ss_pred CEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh--hh--cCCCC
Confidence 999999999987764 46778999999999999987 3 35444 799999999999998876 22 37999
Q ss_pred EEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376 190 RLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 190 ~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
.|++++|+++.++. +..+++|+.|+++.+.
T Consensus 276 ~L~Ls~N~l~~~~~-----~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 276 VLDLSSNRLNRAPQ-----PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CEECCSCCCCSCCC-----TTSCCCCSCEECSSTT
T ss_pred EEECCCCcCCCCch-----hhhCCCccEEECcCCC
Confidence 99999999998764 3678999999887764
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=2.9e-16 Score=148.32 Aligned_cols=160 Identities=24% Similarity=0.295 Sum_probs=106.3
Q ss_pred Ccchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC--Cc
Q psy13376 64 NLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LD 136 (417)
Q Consensus 64 ~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~ 136 (417)
++..++.- .+++++|++++|.++.++. +..+++|++|++++|.++.++. +..+++|++|++++|.++.++. +.
T Consensus 18 ~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 18 NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp CCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred CccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence 34444433 4567777777777777653 6777777777777777776653 7777777777777777776663 77
Q ss_pred cccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCC
Q psy13376 137 TLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQ 214 (417)
Q Consensus 137 ~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~ 214 (417)
.+++|++|++++|.++.++ .+..+++|++|++++|.++.++-...+..+++|++|++++|.++.++......+..++.
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccc
Confidence 7777777777777777765 36777777777777777776431135677777777777777777765422223333333
Q ss_pred cc-cccCccc
Q psy13376 215 LQ-CYNNHII 223 (417)
Q Consensus 215 L~-~Ld~~~~ 223 (417)
+. .|+++.+
T Consensus 178 l~l~L~ls~n 187 (276)
T 2z62_A 178 LNLSLDLSLN 187 (276)
T ss_dssp CCEEEECCSS
T ss_pred cceeeecCCC
Confidence 33 4555544
No 77
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=1e-16 Score=137.17 Aligned_cols=128 Identities=23% Similarity=0.317 Sum_probs=89.2
Q ss_pred CcccceEeeeCCCCC--CcCC-CCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCC-cCC-CCCCCCCcEEec
Q psy13376 94 MENLVELDLSMNHIG--VIEN-LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIET-IEG-LDHLEKLELFNI 168 (417)
Q Consensus 94 l~~L~~L~Ls~N~l~--~l~~-l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~-l~~-l~~l~~L~~L~L 168 (417)
.++|+.|++++|.++ .++. +..+++|++|++++|.++.++.+..+++|++|++++|.++. ++. +..+++|++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 355666666666666 4543 56666777777777777666556677777777777777776 443 345777788888
Q ss_pred cCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCc
Q psy13376 169 AANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNH 221 (417)
Q Consensus 169 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~ 221 (417)
++|.+++++....+..+++|++|++++|+++..+.|+...+..+++|+.||++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88877776544566778888888888888887777665677778888888765
No 78
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=3.2e-16 Score=143.53 Aligned_cols=144 Identities=22% Similarity=0.288 Sum_probs=126.8
Q ss_pred cEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCC---CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCC
Q psy13376 76 KAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIEN---LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNR 150 (417)
Q Consensus 76 ~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~---l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~ 150 (417)
+.+++++|.++.+|. .-.+.+++|++++|.++.++. |..+++|++|++++|.|+.++. |..+++|++|+|++|.
T Consensus 14 ~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 589999999999976 113467899999999998842 8899999999999999999885 9999999999999999
Q ss_pred CCCcCC--CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376 151 IETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 151 i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
|+.++. +..+++|++|++++|.|+.+++ ..+..+++|+.|++++|.++.+++ ..+..+++|+.|+++.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITTVAP---GAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCBCT---TTTTTCTTCCEEECCSCC
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCEECH---HHhcCCCCCCEEEecCcC
Confidence 999863 8999999999999999999865 467899999999999999999854 356789999999988765
No 79
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.67 E-value=3.8e-16 Score=162.54 Aligned_cols=153 Identities=16% Similarity=0.151 Sum_probs=123.3
Q ss_pred ccccccCCcchhhhhcccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCc
Q psy13376 57 SLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLD 136 (417)
Q Consensus 57 ~l~~~~n~i~~l~~ll~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~ 136 (417)
.|.++.|+|..++..+++|+.|++++|.|+.++.+.. +|++|++++|.++.+|. .+++|+.|++++|.|+.+|.
T Consensus 84 ~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~-- 157 (571)
T 3cvr_A 84 VLEITQNALISLPELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE-- 157 (571)
T ss_dssp EEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC--
T ss_pred EEECcCCCCcccccccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC--
Confidence 4467778888777448899999999999998877444 89999999999998887 68899999999999988887
Q ss_pred cccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCc-------CEEeccCCCCCCCCCccHHHH
Q psy13376 137 TLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL-------GRLNIERNPVCDKENVDGFAI 209 (417)
Q Consensus 137 ~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L-------~~L~L~~N~l~~~~~~~~~~~ 209 (417)
.+++|++|+|++|.|+.+|.+. ++|++|++++|.|+.+|. +.. +| +.|++++|.|+.+|. .+
T Consensus 158 ~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~---~~~--~L~~~~~~L~~L~Ls~N~l~~lp~----~l 226 (571)
T 3cvr_A 158 LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPA---VPV--RNHHSEETEIFFRCRENRITHIPE----NI 226 (571)
T ss_dssp CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCC---CC----------CCEEEECCSSCCCCCCG----GG
T ss_pred cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhh---HHH--hhhcccccceEEecCCCcceecCH----HH
Confidence 5678999999999999888754 889999999999988776 222 56 899999999998876 34
Q ss_pred hcCCCcccccCcccCHH
Q psy13376 210 AMVPQLQCYNNHIILED 226 (417)
Q Consensus 210 ~~l~~L~~Ld~~~~~~~ 226 (417)
..+++|+.|+++.+...
T Consensus 227 ~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 227 LSLDPTCTIILEDNPLS 243 (571)
T ss_dssp GGSCTTEEEECCSSSCC
T ss_pred hcCCCCCEEEeeCCcCC
Confidence 55889999988887643
No 80
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.67 E-value=1.4e-16 Score=168.35 Aligned_cols=207 Identities=17% Similarity=0.187 Sum_probs=131.1
Q ss_pred ccceeeccccccCCCCch---hhhHHHHHhcCCCCCChhhhh-ccc--cccccccccccccCCcchhhhh---ccc-ccE
Q psy13376 8 DRIKKIGLIKDRAGDEST---LKNLAQVLQNAPAIINEDLLS-KKG--VISENLLSLLQESTNLAEKLQI---YKL-IKA 77 (417)
Q Consensus 8 ~~l~~l~l~~n~l~dl~~---L~~l~~L~~~~~~~~~~~~l~-~~~--~~~~~~~~l~~~~n~i~~l~~l---l~~-L~~ 77 (417)
++++.+++..|.++.++. +.++.+|..+. +..+.+. .++ ........+.++.|++..++.. +++ |+.
T Consensus 305 ~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~---L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~ 381 (636)
T 4eco_A 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLE---CLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN 381 (636)
T ss_dssp GTCCEEECCSSCCSSCCCHHHHTTCTTCCEEE---CCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCE
T ss_pred CCCCEEECCCCcCCccCchhhhccCCCCCEEe---CcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcE
Confidence 556666666666665554 44443343333 2222222 110 0001122445666666655443 666 777
Q ss_pred EEeecCCCCCCCC-cCC--CcccceEeeeCCCCCCc-C-CCC-------CCccCceeeeeCCCCCcccC--Cccccccce
Q psy13376 78 VNLRIKTLRKIEN-LWM--MENLVELDLSMNHIGVI-E-NLD-------QLVCLEKLDLGYNRIEQIQG--LDTLVNLKV 143 (417)
Q Consensus 78 L~Ls~N~i~~i~~-l~~--l~~L~~L~Ls~N~l~~l-~-~l~-------~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~ 143 (417)
|++++|.++.++. +.. +++|++|++++|.++.. | .+. .+++|++|++++|.++.+|. +..+++|++
T Consensus 382 L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~ 461 (636)
T 4eco_A 382 LSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461 (636)
T ss_dssp EECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSE
T ss_pred EEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCE
Confidence 7777777777765 333 33677777777777653 2 244 66678888888888887775 556788888
Q ss_pred eEeecCCCCCcCC--CC-------CCCCCcEEeccCCccCcchhhhhhh--CCCCcCEEeccCCCCCCCCCccHHHHhcC
Q psy13376 144 LNLKMNRIETIEG--LD-------HLEKLELFNIAANRIQSLASLVYLR--RFKHLGRLNIERNPVCDKENVDGFAIAMV 212 (417)
Q Consensus 144 L~Ls~N~i~~l~~--l~-------~l~~L~~L~Ls~N~i~~l~~~~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~~~~l 212 (417)
|+|++|.++.++. +. ++++|++|++++|.++.++. .+. .+++|+.|++++|+++.+|. .+..+
T Consensus 462 L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~~~~l~~L~~L~Ls~N~l~~ip~----~~~~l 535 (636)
T 4eco_A 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSD--DFRATTLPYLVGIDLSYNSFSKFPT----QPLNS 535 (636)
T ss_dssp EECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCG--GGSTTTCTTCCEEECCSSCCSSCCC----GGGGC
T ss_pred EECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccCh--hhhhccCCCcCEEECCCCCCCCcCh----hhhcC
Confidence 8888888887752 22 22378888888888887765 333 78888888888888888765 45678
Q ss_pred CCcccccCccc
Q psy13376 213 PQLQCYNNHII 223 (417)
Q Consensus 213 ~~L~~Ld~~~~ 223 (417)
++|+.|+++.+
T Consensus 536 ~~L~~L~Ls~N 546 (636)
T 4eco_A 536 STLKGFGIRNQ 546 (636)
T ss_dssp SSCCEEECCSC
T ss_pred CCCCEEECCCC
Confidence 88888887654
No 81
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.66 E-value=2.6e-16 Score=167.03 Aligned_cols=128 Identities=27% Similarity=0.372 Sum_probs=61.7
Q ss_pred cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCccc----------CCccccccceeEeecCCCCCcC--C
Q psy13376 91 LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQ----------GLDTLVNLKVLNLKMNRIETIE--G 156 (417)
Q Consensus 91 l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~----------~~~~l~~L~~L~Ls~N~i~~l~--~ 156 (417)
+..+++|+.|++++|.++.++. +.++++|++|++++|.++.++ .+..+++|++|++++|+++.++ .
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~ 555 (680)
T 1ziw_A 476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV 555 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHH
Confidence 4445555555555555554432 445555555555555554331 0344455555555555555544 2
Q ss_pred CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHh-cCCCcccccCcc
Q psy13376 157 LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIA-MVPQLQCYNNHI 222 (417)
Q Consensus 157 l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~-~l~~L~~Ld~~~ 222 (417)
|..+++|++|++++|+++.++. ..+..+++|+.|++++|.++.+++ ..+. .+++|+.++++.
T Consensus 556 ~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 556 FKDLFELKIIDLGLNNLNTLPA-SVFNNQVSLKSLNLQKNLITSVEK---KVFGPAFRNLTELDMRF 618 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCCCBCCH---HHHHHHHTTCSEEECTT
T ss_pred cccccCcceeECCCCCCCcCCH-hHhCCCCCCCEEECCCCcCCccCh---hHhcccccccCEEEccC
Confidence 4455555555555555555443 234445555555555555554443 1222 344455544443
No 82
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.66 E-value=1.2e-15 Score=137.98 Aligned_cols=144 Identities=22% Similarity=0.322 Sum_probs=127.0
Q ss_pred cEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCC
Q psy13376 76 KAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151 (417)
Q Consensus 76 ~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i 151 (417)
+.++.++++++.++. ...++|++|++++|.++.++. +..+++|++|++++|+++.++. |..+++|++|++++|.+
T Consensus 10 ~~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 578888999998875 234689999999999998875 8899999999999999999886 78999999999999999
Q ss_pred CCcCC--CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376 152 ETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 152 ~~l~~--l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
+.++. +..+++|++|++++|.++.++. ..+..+++|+.|++++|.++.++. ..+..+++|+.|+++.+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPD-GVFDKLTQLKDLRLYQNQLKSVPD---GVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSCC
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCH-hHhccCCcCCEEECCCCccceeCH---HHhccCCCccEEEecCCC
Confidence 99874 7899999999999999999876 467889999999999999998876 346789999999998874
No 83
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.66 E-value=3.4e-16 Score=164.64 Aligned_cols=134 Identities=18% Similarity=0.195 Sum_probs=111.7
Q ss_pred ccccCCcchhhhhcccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCccc
Q psy13376 59 LQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTL 138 (417)
Q Consensus 59 ~~~~n~i~~l~~ll~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~~l 138 (417)
.++.|++..++..+++|+.|++++|.|+.++.. +++|+.|++++|.++.++.. +++|+.|++++|.|+.+| ..+
T Consensus 167 ~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp--~~l 240 (622)
T 3g06_A 167 WAYNNQLTSLPMLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLP--VLP 240 (622)
T ss_dssp ECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCC--CCC
T ss_pred ECCCCCCCCCcccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcCC--CCC
Confidence 344444444443357788888888888877653 47899999999999998863 589999999999999998 556
Q ss_pred cccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCC
Q psy13376 139 VNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKE 202 (417)
Q Consensus 139 ~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~ 202 (417)
++|+.|++++|.|+.+|. .+++|++|++++|.|+.+|. .+..+++|+.|++++|++++..
T Consensus 241 ~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp~--~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 241 SELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPE--SLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp TTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCCG--GGGGSCTTCEEECCSCCCCHHH
T ss_pred CcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCCH--HHhhccccCEEEecCCCCCCcC
Confidence 899999999999999987 78899999999999999875 5789999999999999998643
No 84
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.65 E-value=8.2e-16 Score=158.90 Aligned_cols=159 Identities=20% Similarity=0.225 Sum_probs=120.9
Q ss_pred ccccccCCcchhh-----hh--cccccEEEeecCCCCCCCC----cCCCcccceEeeeCCCCCCcCC-CCCCccCceeee
Q psy13376 57 SLLQESTNLAEKL-----QI--YKLIKAVNLRIKTLRKIEN----LWMMENLVELDLSMNHIGVIEN-LDQLVCLEKLDL 124 (417)
Q Consensus 57 ~l~~~~n~i~~l~-----~l--l~~L~~L~Ls~N~i~~i~~----l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~L 124 (417)
.+.++.|++.... .+ +++|+.|++++|.++.++. +..+++|++|++++|+++.+|. +..+++|++|++
T Consensus 338 ~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~L 417 (549)
T 2z81_A 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNL 417 (549)
T ss_dssp EEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEEC
T ss_pred EEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEEC
Confidence 4456777776532 12 6778888888888877642 6777888888888888887764 677778888888
Q ss_pred eCCCCCcccCCccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCc
Q psy13376 125 GYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENV 204 (417)
Q Consensus 125 s~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 204 (417)
++|.++.++... .++|++|++++|+++.++ ..+++|++|++++|+++.+|.. ..+++|+.|++++|+++..++
T Consensus 418 s~N~l~~l~~~~-~~~L~~L~Ls~N~l~~~~--~~l~~L~~L~Ls~N~l~~ip~~---~~l~~L~~L~Ls~N~l~~~~~- 490 (549)
T 2z81_A 418 SSTGIRVVKTCI-PQTLEVLDVSNNNLDSFS--LFLPRLQELYISRNKLKTLPDA---SLFPVLLVMKISRNQLKSVPD- 490 (549)
T ss_dssp TTSCCSCCCTTS-CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSSCCCG---GGCTTCCEEECCSSCCCCCCT-
T ss_pred CCCCcccccchh-cCCceEEECCCCChhhhc--ccCChhcEEECCCCccCcCCCc---ccCccCCEEecCCCccCCcCH-
Confidence 888887776511 257888888888877764 5788999999999999988763 568899999999999998776
Q ss_pred cHHHHhcCCCcccccCcccC
Q psy13376 205 DGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 205 ~~~~~~~l~~L~~Ld~~~~~ 224 (417)
..+..+++|+.|+++.+.
T Consensus 491 --~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 491 --GIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp --TGGGGCTTCCEEECCSSC
T ss_pred --HHHhcCcccCEEEecCCC
Confidence 346788999999988776
No 85
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.65 E-value=4.7e-17 Score=170.38 Aligned_cols=164 Identities=14% Similarity=0.151 Sum_probs=85.1
Q ss_pred ccccccCCcchhh---h-h--cccccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcC---CCCCCccCceeeeeC
Q psy13376 57 SLLQESTNLAEKL---Q-I--YKLIKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIE---NLDQLVCLEKLDLGY 126 (417)
Q Consensus 57 ~l~~~~n~i~~l~---~-l--l~~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~ 126 (417)
.+.++.|++..+. . + +++|+.|++++|.++.++. +..+++|+.|++++|.++.++ .+..+++|++|++++
T Consensus 354 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 433 (606)
T 3vq2_A 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433 (606)
T ss_dssp EEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTT
T ss_pred EEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcC
Confidence 3445666665442 1 1 5666666666666655543 555566666666666555442 245555555555555
Q ss_pred CCCCccc-C-CccccccceeEeecCCCCC--cC-CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCC
Q psy13376 127 NRIEQIQ-G-LDTLVNLKVLNLKMNRIET--IE-GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDK 201 (417)
Q Consensus 127 N~l~~l~-~-~~~l~~L~~L~Ls~N~i~~--l~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~ 201 (417)
|.++... . +..+++|++|++++|.++. ++ .+..+++|++|++++|.++.+++ ..+..+++|+.|++++|+++..
T Consensus 434 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~ 512 (606)
T 3vq2_A 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW-GVFDTLHRLQLLNMSHNNLLFL 512 (606)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCE
T ss_pred CCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh-hhhcccccCCEEECCCCcCCCc
Confidence 5555432 2 5555555555555555553 22 34555555555555555555433 2344555555555555555544
Q ss_pred CCccHHHHhcCCCcccccCcccC
Q psy13376 202 ENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 202 ~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
.+ ..+..+++|+.|+++.+.
T Consensus 513 ~~---~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 513 DS---SHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp EG---GGTTTCTTCCEEECTTSC
T ss_pred CH---HHccCCCcCCEEECCCCc
Confidence 22 133445555555554443
No 86
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.65 E-value=9.5e-17 Score=154.88 Aligned_cols=206 Identities=17% Similarity=0.184 Sum_probs=128.5
Q ss_pred ccceeeccccccCCC---C-chhhhHHHHHhcCCC----C--CChhhhhccccccccccccccccCCcc-hhhh-h--cc
Q psy13376 8 DRIKKIGLIKDRAGD---E-STLKNLAQVLQNAPA----I--INEDLLSKKGVISENLLSLLQESTNLA-EKLQ-I--YK 73 (417)
Q Consensus 8 ~~l~~l~l~~n~l~d---l-~~L~~l~~L~~~~~~----~--~~~~~l~~~~~~~~~~~~l~~~~n~i~-~l~~-l--l~ 73 (417)
.+++.+++..|.++. + ..+.++.+|..+... + .-...+..+ .....+.++.|++. .++. + ++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l----~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL----TQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC----TTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcC----CCCCEEECcCCeeCCcCCHHHhCCC
Confidence 578889999998875 2 234443333332210 0 000011111 11123456666665 3332 2 67
Q ss_pred cccEEEeecCCCCC-CCC-cCCCcccceEeeeCCCCC-CcCC-CCCCc-cCceeeeeCCCCC-cccC-CccccccceeEe
Q psy13376 74 LIKAVNLRIKTLRK-IEN-LWMMENLVELDLSMNHIG-VIEN-LDQLV-CLEKLDLGYNRIE-QIQG-LDTLVNLKVLNL 146 (417)
Q Consensus 74 ~L~~L~Ls~N~i~~-i~~-l~~l~~L~~L~Ls~N~l~-~l~~-l~~l~-~L~~L~Ls~N~l~-~l~~-~~~l~~L~~L~L 146 (417)
+|++|++++|.++. ++. +..+++|++|++++|.++ .+|. +..++ +|++|++++|.++ .+|. +..++ |++|++
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~L 204 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEEC
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEEC
Confidence 77777777777773 333 677777777777777776 4443 66666 7777777777776 3443 55555 777777
Q ss_pred ecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCC-CCCccHHHHhcCCCcccccCccc
Q psy13376 147 KMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCD-KENVDGFAIAMVPQLQCYNNHII 223 (417)
Q Consensus 147 s~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~l~~L~~Ld~~~~ 223 (417)
++|.++... .+..+++|++|++++|.++...+ .+..+++|++|++++|.+++ +|. .+..+++|+.|+++.+
T Consensus 205 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNRIYGTLPQ----GLTQLKFLHSLNVSFN 278 (313)
T ss_dssp CSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG--GCCCCTTCCEEECCSSCCEECCCG----GGGGCTTCCEEECCSS
T ss_pred cCCcccCcCCHHHhcCCCCCEEECCCCceeeecC--cccccCCCCEEECcCCcccCcCCh----HHhcCcCCCEEECcCC
Confidence 777776542 46777888888888888876443 35677888888888888873 333 4567888888887766
Q ss_pred C
Q psy13376 224 L 224 (417)
Q Consensus 224 ~ 224 (417)
.
T Consensus 279 ~ 279 (313)
T 1ogq_A 279 N 279 (313)
T ss_dssp E
T ss_pred c
Confidence 4
No 87
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.65 E-value=1.8e-16 Score=167.65 Aligned_cols=212 Identities=13% Similarity=0.143 Sum_probs=139.3
Q ss_pred ccccceeeccccccCC-CCchhhhHHHHHhcCCCCCChhhhhccc----cccccccccccccCCcchhhhh-----cccc
Q psy13376 6 TVDRIKKIGLIKDRAG-DESTLKNLAQVLQNAPAIINEDLLSKKG----VISENLLSLLQESTNLAEKLQI-----YKLI 75 (417)
Q Consensus 6 ~~~~l~~l~l~~n~l~-dl~~L~~l~~L~~~~~~~~~~~~l~~~~----~~~~~~~~l~~~~n~i~~l~~l-----l~~L 75 (417)
.+++++.+++..|.++ .++.+..+.+|..+. ++.+.+..++ ........+.++.|++..++.. +++|
T Consensus 328 ~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~---L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L 404 (636)
T 4eco_A 328 KMKKLGMLECLYNQLEGKLPAFGSEIKLASLN---LAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM 404 (636)
T ss_dssp TCTTCCEEECCSCCCEEECCCCEEEEEESEEE---CCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCE
T ss_pred cCCCCCEEeCcCCcCccchhhhCCCCCCCEEE---CCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCcc
Confidence 4467888888888888 665444444444443 2222222210 0111123456777887766654 3378
Q ss_pred cEEEeecCCCCCCCC--cC-------CCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC--Cccc----
Q psy13376 76 KAVNLRIKTLRKIEN--LW-------MMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTL---- 138 (417)
Q Consensus 76 ~~L~Ls~N~i~~i~~--l~-------~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~l---- 138 (417)
+.|++++|.++...+ +. .+++|++|++++|.++.++. +..+++|++|++++|.++.+|. +...
T Consensus 405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~ 484 (636)
T 4eco_A 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484 (636)
T ss_dssp EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEEC
T ss_pred CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccc
Confidence 888888888876422 54 66788888888888887775 5567888888888888887774 3322
Q ss_pred ---cccceeEeecCCCCCcC-CCC--CCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccC------CCCCCCCCccH
Q psy13376 139 ---VNLKVLNLKMNRIETIE-GLD--HLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIER------NPVCDKENVDG 206 (417)
Q Consensus 139 ---~~L~~L~Ls~N~i~~l~-~l~--~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~------N~l~~~~~~~~ 206 (417)
++|++|++++|+++.+| .+. .+++|++|++++|+++.+|. .+..+++|+.|++++ |.+....+
T Consensus 485 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~--~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p--- 559 (636)
T 4eco_A 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT--QPLNSSTLKGFGIRNQRDAQGNRTLREWP--- 559 (636)
T ss_dssp TTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCC--GGGGCSSCCEEECCSCBCTTCCBCCCCCC---
T ss_pred cccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcCh--hhhcCCCCCEEECCCCcccccCcccccCh---
Confidence 37888888888888776 343 78888888888888887654 456778888888844 44443222
Q ss_pred HHHhcCCCcccccCcccCH
Q psy13376 207 FAIAMVPQLQCYNNHIILE 225 (417)
Q Consensus 207 ~~~~~l~~L~~Ld~~~~~~ 225 (417)
..+..+++|+.|+++.+..
T Consensus 560 ~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp TTGGGCSSCCEEECCSSCC
T ss_pred HHHhcCCCCCEEECCCCcC
Confidence 2456678888888777653
No 88
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.65 E-value=3.2e-16 Score=166.32 Aligned_cols=212 Identities=16% Similarity=0.218 Sum_probs=113.0
Q ss_pred cccceeeccccccCCCCch--hhhHHHHHhcCCC-------CCChhhhhccccccccccccccccCCcchhhhh----cc
Q psy13376 7 VDRIKKIGLIKDRAGDEST--LKNLAQVLQNAPA-------IINEDLLSKKGVISENLLSLLQESTNLAEKLQI----YK 73 (417)
Q Consensus 7 ~~~l~~l~l~~n~l~dl~~--L~~l~~L~~~~~~-------~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~l----l~ 73 (417)
+++++.+++..|.++.+.+ +.++.+|..+... .+....+..+ .......+.++.|++..+..- ++
T Consensus 328 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~ 405 (680)
T 1ziw_A 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL--AHSPLHILNLTKNKISKIESDAFSWLG 405 (680)
T ss_dssp CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGG--TTSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhccc--ccCcCceEECCCCCCCeEChhhhhCCC
Confidence 4667788888888777654 4444444333311 0000001000 001112344556666555322 56
Q ss_pred cccEEEeecCCCCC-CC--CcCCCcccceEeeeCCCCCCcC----------------------------CCCCCccCcee
Q psy13376 74 LIKAVNLRIKTLRK-IE--NLWMMENLVELDLSMNHIGVIE----------------------------NLDQLVCLEKL 122 (417)
Q Consensus 74 ~L~~L~Ls~N~i~~-i~--~l~~l~~L~~L~Ls~N~l~~l~----------------------------~l~~l~~L~~L 122 (417)
+|+.|++++|.++. ++ .+..+++|++|++++|.++.++ .+..+++|++|
T Consensus 406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L 485 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485 (680)
T ss_dssp TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence 66666666666653 32 2555555666666555544332 24555666666
Q ss_pred eeeCCCCCcccC--CccccccceeEeecCCCCCcC----------CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCE
Q psy13376 123 DLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE----------GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGR 190 (417)
Q Consensus 123 ~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~----------~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~ 190 (417)
++++|+++.++. |..+++|++|++++|.++.++ .+..+++|++|++++|+++.++. ..|..+++|+.
T Consensus 486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~-~~~~~l~~L~~ 564 (680)
T 1ziw_A 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV-EVFKDLFELKI 564 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCE
T ss_pred ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH-HHcccccCcce
Confidence 666666665553 556666666666666665441 14555666666666666665554 34556666666
Q ss_pred EeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376 191 LNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 191 L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
|++++|.++.++. ..+..+++|+.|+++.+.
T Consensus 565 L~Ls~N~l~~l~~---~~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 565 IDLGLNNLNTLPA---SVFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp EECCSSCCCCCCT---TTTTTCTTCCEEECTTSC
T ss_pred eECCCCCCCcCCH---hHhCCCCCCCEEECCCCc
Confidence 6666666666554 234455666666665553
No 89
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.64 E-value=1.4e-17 Score=181.46 Aligned_cols=146 Identities=22% Similarity=0.297 Sum_probs=76.2
Q ss_pred cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccCCccccccceeEee
Q psy13376 72 YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLK 147 (417)
Q Consensus 72 l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls 147 (417)
+++|+.|++++|.++.+.+ +..+++|+.|++++|.++.++. |..+++|++|++++|.++.++. +++|+.|+++
T Consensus 313 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~---~~~L~~L~l~ 389 (844)
T 3j0a_A 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF---IPSIPDIFLS 389 (844)
T ss_dssp CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS---CCSCSEEEEE
T ss_pred CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC---CCCcchhccC
Confidence 4444444444444444421 4444444444444444444432 4444444444444444443332 3344444444
Q ss_pred cCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376 148 MNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 148 ~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
+|+++.++.. ..+++.|++++|.++.++....+..+++|+.|++++|+++..+.. ..+..+++|+.|+++.+.
T Consensus 390 ~N~l~~l~~~--~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~~~~~L~~L~Ls~N~ 462 (844)
T 3j0a_A 390 GNKLVTLPKI--NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD--QTPSENPSLEQLFLGENM 462 (844)
T ss_dssp SCCCCCCCCC--CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSS--SSSCSCTTCCBCEEESCC
T ss_pred CCCccccccc--ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccc--cccccCCccccccCCCCc
Confidence 4444444322 345666666666666665544556777778888888777765431 123346777777766654
No 90
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.64 E-value=1.6e-16 Score=140.08 Aligned_cols=129 Identities=22% Similarity=0.229 Sum_probs=116.0
Q ss_pred cccccEEEeecCCCCCCCCcCCCc-ccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC--CccccccceeEeec
Q psy13376 72 YKLIKAVNLRIKTLRKIENLWMME-NLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKM 148 (417)
Q Consensus 72 l~~L~~L~Ls~N~i~~i~~l~~l~-~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~ 148 (417)
+++|+.|++++|.++.++.+..+. +|++|++++|.++.++.+..+++|++|++++|.|+.++. +..+++|++|++++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 97 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC
Confidence 678999999999999998877666 999999999999999889999999999999999999985 68999999999999
Q ss_pred CCCCCcC---CCCCCCCCcEEeccCCccCcchhh--hhhhCCCCcCEEeccCCCCCC
Q psy13376 149 NRIETIE---GLDHLEKLELFNIAANRIQSLASL--VYLRRFKHLGRLNIERNPVCD 200 (417)
Q Consensus 149 N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~~--~~l~~l~~L~~L~L~~N~l~~ 200 (417)
|.|+.++ .+..+++|++|++++|.++.++.. ..+..+++|+.|++++|++..
T Consensus 98 N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 98 NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999887 478899999999999999987652 136889999999999998754
No 91
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=7.1e-16 Score=167.66 Aligned_cols=159 Identities=16% Similarity=0.205 Sum_probs=85.2
Q ss_pred ccccCCcchhhhh--cccccEEEeecCCCCCCCC-cCCCcc-cceEeeeCCCCCCcCC-CCC------------------
Q psy13376 59 LQESTNLAEKLQI--YKLIKAVNLRIKTLRKIEN-LWMMEN-LVELDLSMNHIGVIEN-LDQ------------------ 115 (417)
Q Consensus 59 ~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~-l~~l~~-L~~L~Ls~N~l~~l~~-l~~------------------ 115 (417)
.++.|++..++.+ +++|+.|++++|.++.++. +..+++ |+.|++++|.++.+|. +..
T Consensus 579 ~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 579 DCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp ECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred ECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCC
Confidence 4455555544433 4555555555555555443 445555 5555555555554442 222
Q ss_pred -------------CccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcCC--CC-------CCCCCcEEeccCC
Q psy13376 116 -------------LVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIEG--LD-------HLEKLELFNIAAN 171 (417)
Q Consensus 116 -------------l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~~--l~-------~l~~L~~L~Ls~N 171 (417)
+++|+.|++++|.++.+|. +..+++|+.|+|++|.|+.+|. +. ++++|+.|++++|
T Consensus 659 ~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N 738 (876)
T 4ecn_A 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738 (876)
T ss_dssp TSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS
T ss_pred ccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC
Confidence 2355555555555555553 3355666666666666665542 11 2236666666666
Q ss_pred ccCcchhhhhhh--CCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCccc
Q psy13376 172 RIQSLASLVYLR--RFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHII 223 (417)
Q Consensus 172 ~i~~l~~~~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~ 223 (417)
+++.+|. .+. .+++|+.|+|++|+++.+|. .+..+++|+.|+++.+
T Consensus 739 ~L~~lp~--~l~~~~l~~L~~L~Ls~N~L~~lp~----~l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 739 KLTSLSD--DFRATTLPYLSNMDVSYNCFSSFPT----QPLNSSQLKAFGIRHQ 786 (876)
T ss_dssp CCCCCCG--GGSTTTCTTCCEEECCSSCCSSCCC----GGGGCTTCCEEECCCC
T ss_pred CCccchH--HhhhccCCCcCEEEeCCCCCCccch----hhhcCCCCCEEECCCC
Confidence 6666554 222 56666666666666666554 3445666666666553
No 92
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.63 E-value=1.4e-15 Score=157.11 Aligned_cols=191 Identities=19% Similarity=0.251 Sum_probs=146.9
Q ss_pred ccceeeccccccCCCCchh--hhHHHHHhcCCC--CCChhhhhc---cccccccccccccccCCcchhhh----h--ccc
Q psy13376 8 DRIKKIGLIKDRAGDESTL--KNLAQVLQNAPA--IINEDLLSK---KGVISENLLSLLQESTNLAEKLQ----I--YKL 74 (417)
Q Consensus 8 ~~l~~l~l~~n~l~dl~~L--~~l~~L~~~~~~--~~~~~~l~~---~~~~~~~~~~l~~~~n~i~~l~~----l--l~~ 74 (417)
++++.+++..|.++.++.- ..+.+|..+... .+....... .+. ......+.+++|++..+.. + +++
T Consensus 310 ~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~ 388 (549)
T 2z81_A 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA-WPSLQTLVLSQNHLRSMQKTGEILLTLKN 388 (549)
T ss_dssp TTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTS-STTCCEEECTTSCCCCHHHHHHHGGGCTT
T ss_pred ccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhc-cccCcEEEccCCcccccccchhhhhcCCC
Confidence 4677788888888777642 234444443311 121111100 101 1223456799999988753 3 899
Q ss_pred ccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCC
Q psy13376 75 IKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIET 153 (417)
Q Consensus 75 L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~ 153 (417)
|+.|++++|+++.++. +..+++|++|++++|.++.++... .++|++|++++|+++.++ ..+++|++|++++|+|+.
T Consensus 389 L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~-~~~L~~L~Ls~N~l~~~~--~~l~~L~~L~Ls~N~l~~ 465 (549)
T 2z81_A 389 LTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI-PQTLEVLDVSNNNLDSFS--LFLPRLQELYISRNKLKT 465 (549)
T ss_dssp CCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTS-CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSS
T ss_pred CCEEECCCCCCccCChhhcccccccEEECCCCCcccccchh-cCCceEEECCCCChhhhc--ccCChhcEEECCCCccCc
Confidence 9999999999999976 888999999999999999887521 368999999999998875 578899999999999999
Q ss_pred cCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376 154 IEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN 203 (417)
Q Consensus 154 l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~ 203 (417)
+|....+++|++|++++|+++.+++ ..+..+++|+.|++++|++.+..+
T Consensus 466 ip~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 466 LPDASLFPVLLVMKISRNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCCGGGCTTCCEEECCSSCCCCCCT-TGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCCcccCccCCEEecCCCccCCcCH-HHHhcCcccCEEEecCCCccCCCc
Confidence 9988889999999999999999876 567899999999999999977544
No 93
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=1e-15 Score=166.40 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=74.5
Q ss_pred cccEEEeecCCCCCCCC---cCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC-Cccccc-cceeEeec
Q psy13376 74 LIKAVNLRIKTLRKIEN---LWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG-LDTLVN-LKVLNLKM 148 (417)
Q Consensus 74 ~L~~L~Ls~N~i~~i~~---l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~-~~~l~~-L~~L~Ls~ 148 (417)
+|+.|++++|.++.+|. +..+++|+.|++++|.++.+|.+..+++|+.|++++|.++.+|. +..+++ |++|++++
T Consensus 549 ~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp TCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCS
T ss_pred CccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcC
Confidence 56666666666665554 55666666666666666655555666666666666666665553 555555 66666666
Q ss_pred CCCCCcCC-CCC-------------------------------CCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCC
Q psy13376 149 NRIETIEG-LDH-------------------------------LEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196 (417)
Q Consensus 149 N~i~~l~~-l~~-------------------------------l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N 196 (417)
|.++.+|. +.. +++|+.|++++|.++.++. ..+..+++|+.|++++|
T Consensus 629 N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~-~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT-ELFATGSPISTIILSNN 707 (876)
T ss_dssp SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH-HHHHTTCCCSEEECCSC
T ss_pred CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCH-HHHccCCCCCEEECCCC
Confidence 66555542 222 2255555555555555544 23445666666666666
Q ss_pred CCCCCCC
Q psy13376 197 PVCDKEN 203 (417)
Q Consensus 197 ~l~~~~~ 203 (417)
.++.+|.
T Consensus 708 ~L~~ip~ 714 (876)
T 4ecn_A 708 LMTSIPE 714 (876)
T ss_dssp CCSCCCT
T ss_pred cCCccCh
Confidence 6665554
No 94
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.62 E-value=1.7e-15 Score=158.56 Aligned_cols=163 Identities=19% Similarity=0.200 Sum_probs=82.1
Q ss_pred ccccccCCcchhhh--h--cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCc-C-CCCCCccCceeeeeCCC
Q psy13376 57 SLLQESTNLAEKLQ--I--YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVI-E-NLDQLVCLEKLDLGYNR 128 (417)
Q Consensus 57 ~l~~~~n~i~~l~~--l--l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~ 128 (417)
.+.++.|++..+.. + +++|++|++++|.++.+++ |..+++|++|++++|.++.+ | .|+++++|++|++++|.
T Consensus 36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 115 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK 115 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSC
T ss_pred EEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCc
Confidence 33455555554443 1 5555555555555555432 55555555555555555554 2 25555555555555555
Q ss_pred CCcccC--CccccccceeEeecCCCCC--cC-CCCCCCCCcEEeccCCccCcchhhhhhhCCCC----cCEEeccCCCCC
Q psy13376 129 IEQIQG--LDTLVNLKVLNLKMNRIET--IE-GLDHLEKLELFNIAANRIQSLASLVYLRRFKH----LGRLNIERNPVC 199 (417)
Q Consensus 129 l~~l~~--~~~l~~L~~L~Ls~N~i~~--l~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~----L~~L~L~~N~l~ 199 (417)
++.++. +..+++|++|++++|.++. +| .++.+++|++|++++|.++.++. ..+..+++ +..+++++|+++
T Consensus 116 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~~l~~L~l~~n~l~ 194 (606)
T 3vq2_A 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV-NDLQFLRENPQVNLSLDMSLNPID 194 (606)
T ss_dssp CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT-TTTHHHHHCTTCCCEEECTTCCCC
T ss_pred cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh-hhhhhhhccccccceeeccCCCcc
Confidence 555442 5555555555555555553 22 35555555555555555555432 12222222 335555555555
Q ss_pred CCCCccHHHHhcCCCcccccCcccC
Q psy13376 200 DKENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 200 ~~~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
.++. ..+ ...+|+.|+++.+.
T Consensus 195 ~~~~---~~~-~~~~L~~L~L~~n~ 215 (606)
T 3vq2_A 195 FIQD---QAF-QGIKLHELTLRGNF 215 (606)
T ss_dssp EECT---TTT-TTCEEEEEEEESCC
T ss_pred eeCc---ccc-cCceeeeeeccCCc
Confidence 5443 111 22367777766654
No 95
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=5.4e-16 Score=149.37 Aligned_cols=151 Identities=14% Similarity=0.097 Sum_probs=120.6
Q ss_pred cccccEEEeecCCCCC-CCC-c--CCCcccceEeeeCCCCCCcCC-CCCC-----ccCceeeeeCCCCCcccC--Ccccc
Q psy13376 72 YKLIKAVNLRIKTLRK-IEN-L--WMMENLVELDLSMNHIGVIEN-LDQL-----VCLEKLDLGYNRIEQIQG--LDTLV 139 (417)
Q Consensus 72 l~~L~~L~Ls~N~i~~-i~~-l--~~l~~L~~L~Ls~N~l~~l~~-l~~l-----~~L~~L~Ls~N~l~~l~~--~~~l~ 139 (417)
+++|++|++++|.++. ++. + ..+++|++|++++|.++.++. +..+ ++|++|++++|+++.++. +..++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 7889999999999985 444 3 789999999999999998764 5555 899999999999998873 88999
Q ss_pred ccceeEeecCCCCCc----CC--CCCCCCCcEEeccCCccCcchhh--hhhhCCCCcCEEeccCCCCCCCCCccHHHHhc
Q psy13376 140 NLKVLNLKMNRIETI----EG--LDHLEKLELFNIAANRIQSLASL--VYLRRFKHLGRLNIERNPVCDKENVDGFAIAM 211 (417)
Q Consensus 140 ~L~~L~Ls~N~i~~l----~~--l~~l~~L~~L~Ls~N~i~~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 211 (417)
+|++|++++|++... +. +..+++|++|++++|.++.++.+ ..+..+++|+.|++++|.++..++. ..+..
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~~ 251 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA--PSCDW 251 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC--SCCCC
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch--hhhhh
Confidence 999999999987642 22 38889999999999999865542 3456789999999999999885521 12345
Q ss_pred CCCcccccCcccC
Q psy13376 212 VPQLQCYNNHIIL 224 (417)
Q Consensus 212 l~~L~~Ld~~~~~ 224 (417)
+++|+.|+++.+.
T Consensus 252 l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 252 PSQLNSLNLSFTG 264 (312)
T ss_dssp CTTCCEEECTTSC
T ss_pred cCCCCEEECCCCc
Confidence 7899999988875
No 96
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=7.8e-16 Score=131.67 Aligned_cols=124 Identities=26% Similarity=0.267 Sum_probs=111.1
Q ss_pred cccccEEEeecCCCC--CCCC-cCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCc-ccC-CccccccceeEe
Q psy13376 72 YKLIKAVNLRIKTLR--KIEN-LWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQ-IQG-LDTLVNLKVLNL 146 (417)
Q Consensus 72 l~~L~~L~Ls~N~i~--~i~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-l~~-~~~l~~L~~L~L 146 (417)
.++++.|++++|.++ .++. +..+++|++|++++|.++.++.+..+++|++|++++|.++. +|. +..+++|++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 688999999999999 6766 78999999999999999999779999999999999999998 665 667999999999
Q ss_pred ecCCCCCc---CCCCCCCCCcEEeccCCccCcchhh--hhhhCCCCcCEEeccC
Q psy13376 147 KMNRIETI---EGLDHLEKLELFNIAANRIQSLASL--VYLRRFKHLGRLNIER 195 (417)
Q Consensus 147 s~N~i~~l---~~l~~l~~L~~L~Ls~N~i~~l~~~--~~l~~l~~L~~L~L~~ 195 (417)
++|.++.+ +.+..+++|++|++++|.++.++.. ..+..+++|+.|++++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999987 4688999999999999999998762 3678899999999864
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.61 E-value=3.5e-15 Score=155.23 Aligned_cols=179 Identities=16% Similarity=0.212 Sum_probs=136.5
Q ss_pred cceeeccccccCCCCch-hhhHHHHHhcCCCCCChhhhhccccccccccccccccCCcchhhhhcccccEEEeecCCCCC
Q psy13376 9 RIKKIGLIKDRAGDEST-LKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRK 87 (417)
Q Consensus 9 ~l~~l~l~~n~l~dl~~-L~~l~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~ll~~L~~L~Ls~N~i~~ 87 (417)
+++.+++..|.++.++. +. .+|..+. +..+.+..++........|.+++|+|..++.+..+|+.|++++|.|+.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~---Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls~N~l~~ 134 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLE---ITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTM 134 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEE---CCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEE---CcCCCCcccccccCCCCEEEccCCCCCCcchhhcCCCEEECCCCcCCC
Confidence 56777777777777654 11 1222222 222222222111122345678889998877754499999999999999
Q ss_pred CCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCcCCCCCCCCC----
Q psy13376 88 IENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKL---- 163 (417)
Q Consensus 88 i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L---- 163 (417)
++. .+++|+.|++++|.|+.+|. .+++|++|++++|.|+.+|.+. ++|++|+|++|+|+.+|.+.. +|
T Consensus 135 lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~~~~--~L~~~~ 206 (571)
T 3cvr_A 135 LPE--LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPAVPV--RNHHSE 206 (571)
T ss_dssp CCC--CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCCCC---------
T ss_pred CCC--cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhhHHH--hhhccc
Confidence 988 78999999999999999987 6789999999999999998855 899999999999999987443 77
Q ss_pred ---cEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCC
Q psy13376 164 ---ELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKE 202 (417)
Q Consensus 164 ---~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~ 202 (417)
+.|++++|.|+.+|. .+..+++|+.|++++|++++..
T Consensus 207 ~~L~~L~Ls~N~l~~lp~--~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 207 ETEIFFRCRENRITHIPE--NILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp -CCEEEECCSSCCCCCCG--GGGGSCTTEEEECCSSSCCHHH
T ss_pred ccceEEecCCCcceecCH--HHhcCCCCCEEEeeCCcCCCcC
Confidence 999999999999986 4456999999999999998743
No 98
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=3.2e-15 Score=134.09 Aligned_cols=126 Identities=25% Similarity=0.363 Sum_probs=104.8
Q ss_pred cEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCC
Q psy13376 76 KAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIE 152 (417)
Q Consensus 76 ~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~ 152 (417)
+.+++++|+++.+|.- -.++|++|++++|.|+.++. +..+++|++|++++|.|+.++. |..+++|++|+|++|+|+
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 5688888888888751 13688999999999988874 8888899999999999988875 888899999999999998
Q ss_pred CcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376 153 TIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN 203 (417)
Q Consensus 153 ~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~ 203 (417)
.++ .|..+++|++|++++|.|+.++. ..+..+++|+.|++++|++.....
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPE-GAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCEECSGG
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeCh-hhhhcCccccEEEeCCCCeecCCc
Confidence 886 48888999999999999988876 467788899999999999876544
No 99
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.60 E-value=1.7e-15 Score=156.94 Aligned_cols=130 Identities=27% Similarity=0.354 Sum_probs=59.4
Q ss_pred cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC--CccccccceeE
Q psy13376 72 YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLN 145 (417)
Q Consensus 72 l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~ 145 (417)
.++++.|++++|.++.++. |..+++|++|++++|.++.++. |.++++|++|++++|.++.++. |..+++|++|+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 3344445555554444432 4444445555555544444431 4444455555555554444432 44444455555
Q ss_pred eecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCC
Q psy13376 146 LKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDK 201 (417)
Q Consensus 146 Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~ 201 (417)
+++|.++.++ .++.+++|++|++++|.++.++....+..+++|++|++++|.++..
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 5554444443 2444444555555554444321112334444445555544444443
No 100
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.60 E-value=4.1e-16 Score=161.73 Aligned_cols=164 Identities=17% Similarity=0.182 Sum_probs=136.7
Q ss_pred ccccccCCcchhh----hh--cccccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcC---CCCCCccCceeeeeC
Q psy13376 57 SLLQESTNLAEKL----QI--YKLIKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIE---NLDQLVCLEKLDLGY 126 (417)
Q Consensus 57 ~l~~~~n~i~~l~----~l--l~~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~ 126 (417)
.+.++.|++.... .+ +++|+.|++++|.++.++. +..+++|++|++++|.++..+ .+..+++|++|++++
T Consensus 351 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 430 (570)
T 2z63_A 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430 (570)
T ss_dssp EEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTT
T ss_pred EEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcC
Confidence 4567777777653 22 7889999999999888765 888999999999999988763 388899999999999
Q ss_pred CCCCcccC--CccccccceeEeecCCCC--CcC-CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCC
Q psy13376 127 NRIEQIQG--LDTLVNLKVLNLKMNRIE--TIE-GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDK 201 (417)
Q Consensus 127 N~l~~l~~--~~~l~~L~~L~Ls~N~i~--~l~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~ 201 (417)
|.++.... +..+++|++|++++|.++ .+| .+..+++|++|++++|+++.+.+ ..+..+++|+.|++++|+++..
T Consensus 431 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~ 509 (570)
T 2z63_A 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMASNQLKSV 509 (570)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCC
T ss_pred CcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh-hhhhcccCCCEEeCCCCcCCCC
Confidence 99986543 888999999999999987 355 68899999999999999998754 4678899999999999999988
Q ss_pred CCccHHHHhcCCCcccccCcccC
Q psy13376 202 ENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 202 ~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
++ ..+..+++|+.|+++.+.
T Consensus 510 ~~---~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 510 PD---GIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CT---TTTTTCTTCCEEECCSSC
T ss_pred CH---HHhhcccCCcEEEecCCc
Confidence 75 356788999999988765
No 101
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=5.1e-15 Score=132.53 Aligned_cols=125 Identities=25% Similarity=0.334 Sum_probs=105.1
Q ss_pred cEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcCC---CCCCccCceeeeeCCCCCcccC--CccccccceeEeecC
Q psy13376 76 KAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIEN---LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN 149 (417)
Q Consensus 76 ~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~~---l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N 149 (417)
+.+++++|+++.+|. +. +++++|++++|.++.++. +..+++|++|+|++|.|+.+++ |..+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 678899999988876 32 389999999999998863 7889999999999999988843 888999999999999
Q ss_pred CCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376 150 RIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN 203 (417)
Q Consensus 150 ~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~ 203 (417)
+|+.++ .+..+++|++|++++|+|+.+.+ ..+..+++|++|++++|++.....
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBCCSGG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCCccCcCc
Confidence 999886 38889999999999999988755 467888999999999999886544
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.60 E-value=5.1e-15 Score=145.57 Aligned_cols=149 Identities=19% Similarity=0.196 Sum_probs=126.2
Q ss_pred ccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCC--CC-CCccCceeeeeCCCCCcccC--CccccccceeEeecC
Q psy13376 75 IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIEN--LD-QLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN 149 (417)
Q Consensus 75 L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~--l~-~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N 149 (417)
-+.+++++++++.+|. .-.+.++.|+|++|.|+.++. +. .+++|++|+|++|+|+.++. |..+++|++|+|++|
T Consensus 20 ~~~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TTEEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 3689999999999986 123568999999999998864 66 89999999999999999984 999999999999999
Q ss_pred CCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccCH
Q psy13376 150 RIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILE 225 (417)
Q Consensus 150 ~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~~ 225 (417)
+|+.++ .|..+++|++|+|++|.|+.++. ..|..+++|+.|+|++|.++.++.........+++|+.||++.+..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECH-HHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 999986 48999999999999999999865 5778999999999999999998872211225789999999987753
No 103
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.59 E-value=1.5e-15 Score=163.94 Aligned_cols=81 Identities=26% Similarity=0.263 Sum_probs=45.6
Q ss_pred cccccEEEeecCCCCCC-CC-cCCCcccceEeeeCCCCC-CcCC-CCCCccCceeeeeCCCCC-cccC-CccccccceeE
Q psy13376 72 YKLIKAVNLRIKTLRKI-EN-LWMMENLVELDLSMNHIG-VIEN-LDQLVCLEKLDLGYNRIE-QIQG-LDTLVNLKVLN 145 (417)
Q Consensus 72 l~~L~~L~Ls~N~i~~i-~~-l~~l~~L~~L~Ls~N~l~-~l~~-l~~l~~L~~L~Ls~N~l~-~l~~-~~~l~~L~~L~ 145 (417)
+++|+.|++++|.++.. +. +..+++|++|++++|+++ .+|. ++.+++|++|++++|+++ .+|. +..+++|+.|+
T Consensus 465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence 55666666666666532 22 555666666666666665 3332 555666666666666665 3332 55555566666
Q ss_pred eecCCCC
Q psy13376 146 LKMNRIE 152 (417)
Q Consensus 146 Ls~N~i~ 152 (417)
+++|.++
T Consensus 545 Ls~N~l~ 551 (768)
T 3rgz_A 545 LNTNLFN 551 (768)
T ss_dssp CCSSEEE
T ss_pred CCCCccC
Confidence 6555543
No 104
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.58 E-value=4.5e-15 Score=152.51 Aligned_cols=162 Identities=18% Similarity=0.180 Sum_probs=113.7
Q ss_pred cccccCCcchhhh--hcccccEEEeecCCCCCC--CCcCCCcccceEeeeCCCCCCcCC----CCCCccCceeeeeCCCC
Q psy13376 58 LLQESTNLAEKLQ--IYKLIKAVNLRIKTLRKI--ENLWMMENLVELDLSMNHIGVIEN----LDQLVCLEKLDLGYNRI 129 (417)
Q Consensus 58 l~~~~n~i~~l~~--ll~~L~~L~Ls~N~i~~i--~~l~~l~~L~~L~Ls~N~l~~l~~----l~~l~~L~~L~Ls~N~l 129 (417)
+.++.|.+..... .+++|++|++++|.++.. +.+..+++|++|++++|+++.++. +..+++|++|++++|.+
T Consensus 307 L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l 386 (520)
T 2z7x_B 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386 (520)
T ss_dssp EEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC
T ss_pred EEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC
Confidence 3445555554442 267777888888877763 237777788888888888776432 67777888888888888
Q ss_pred Cc-ccC--CccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccH
Q psy13376 130 EQ-IQG--LDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDG 206 (417)
Q Consensus 130 ~~-l~~--~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~ 206 (417)
+. +|. +..+++|++|++++|+++....-.-.++|++|++++|+|+.+|. .+..+++|+.|++++|+++.+|.
T Consensus 387 ~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~--~~~~l~~L~~L~L~~N~l~~l~~--- 461 (520)
T 2z7x_B 387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPK--QVVKLEALQELNVASNQLKSVPD--- 461 (520)
T ss_dssp BCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCG--GGGGCTTCCEEECCSSCCCCCCT---
T ss_pred CcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccch--hhhcCCCCCEEECCCCcCCccCH---
Confidence 76 663 67777888888888877543211111688888888888887775 33478888888888888888776
Q ss_pred HHHhcCCCcccccCcccC
Q psy13376 207 FAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 207 ~~~~~l~~L~~Ld~~~~~ 224 (417)
..+..+++|+.|+++.++
T Consensus 462 ~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 462 GIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp TTTTTCTTCCEEECCSSC
T ss_pred HHhccCCcccEEECcCCC
Confidence 245678888888877765
No 105
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=2e-15 Score=145.20 Aligned_cols=130 Identities=11% Similarity=0.025 Sum_probs=68.9
Q ss_pred cccccEEEeecCCCCCCCC--c--CCCcccceEeeeCCCCCCc-C-----CCCCCccCceeeeeCCCCCcccC--Ccccc
Q psy13376 72 YKLIKAVNLRIKTLRKIEN--L--WMMENLVELDLSMNHIGVI-E-----NLDQLVCLEKLDLGYNRIEQIQG--LDTLV 139 (417)
Q Consensus 72 l~~L~~L~Ls~N~i~~i~~--l--~~l~~L~~L~Ls~N~l~~l-~-----~l~~l~~L~~L~Ls~N~l~~l~~--~~~l~ 139 (417)
+++|++|++++|.++...+ + ..+++|++|++++|.++.. + .+..+++|++|++++|.++.++. +..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4456666666666654322 3 5556666666666665532 1 12345566666666666655542 55566
Q ss_pred ccceeEeecCCCCC---cC---CCCCCCCCcEEeccCCccCcchhhh--hhhCCCCcCEEeccCCCCCCC
Q psy13376 140 NLKVLNLKMNRIET---IE---GLDHLEKLELFNIAANRIQSLASLV--YLRRFKHLGRLNIERNPVCDK 201 (417)
Q Consensus 140 ~L~~L~Ls~N~i~~---l~---~l~~l~~L~~L~Ls~N~i~~l~~~~--~l~~l~~L~~L~L~~N~l~~~ 201 (417)
+|++|+|++|++.. ++ .+..+++|++|++++|+++.++... .+..+++|++|++++|.++..
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence 66666666665543 21 1245555666666666655443311 124555555666666555554
No 106
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.58 E-value=1.6e-15 Score=158.64 Aligned_cols=148 Identities=22% Similarity=0.262 Sum_probs=125.8
Q ss_pred cccccccCCcchhhhh----cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCC
Q psy13376 56 LSLLQESTNLAEKLQI----YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYN 127 (417)
Q Consensus 56 ~~l~~~~n~i~~l~~l----l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N 127 (417)
..|++++|+|+.+..- +++|++|+|++|+|+.+++ |.++++|++|+|++|+|+.++. |.++++|++|++++|
T Consensus 55 ~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N 134 (635)
T 4g8a_A 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 134 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS
T ss_pred CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC
Confidence 4567999999998753 8999999999999999865 8999999999999999999874 899999999999999
Q ss_pred CCCcccC--CccccccceeEeecCCCCCcC---CCCCCCCCcEEeccCCccCcchh--hhhhhCCC-CcCEEeccCCCCC
Q psy13376 128 RIEQIQG--LDTLVNLKVLNLKMNRIETIE---GLDHLEKLELFNIAANRIQSLAS--LVYLRRFK-HLGRLNIERNPVC 199 (417)
Q Consensus 128 ~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~--~~~l~~l~-~L~~L~L~~N~l~ 199 (417)
+++.++. |+.+++|++|++++|.++.++ .+..+++|++|++++|+++.++. +..+..++ ....++++.|++.
T Consensus 135 ~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~ 214 (635)
T 4g8a_A 135 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 214 (635)
T ss_dssp CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccc
Confidence 9999985 899999999999999998763 47889999999999999998754 22233333 2457889999987
Q ss_pred CCCC
Q psy13376 200 DKEN 203 (417)
Q Consensus 200 ~~~~ 203 (417)
.++.
T Consensus 215 ~i~~ 218 (635)
T 4g8a_A 215 FIQP 218 (635)
T ss_dssp EECT
T ss_pred ccCc
Confidence 7654
No 107
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=1.9e-14 Score=126.67 Aligned_cols=127 Identities=22% Similarity=0.374 Sum_probs=104.8
Q ss_pred ccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCC
Q psy13376 75 IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNR 150 (417)
Q Consensus 75 L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~ 150 (417)
.+.+++++|+++.++. ...++|+.|++++|.++.++. +..+++|++|++++|.++.++. +..+++|++|++++|.
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 4678888888888874 233688999999999988764 7888999999999999988875 7888999999999999
Q ss_pred CCCcCC--CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376 151 IETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN 203 (417)
Q Consensus 151 i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~ 203 (417)
|+.++. +..+++|++|++++|.++.++. ..+..+++|++|++++|++....+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCH-HHhcCCcccCEEEecCCCeeccCc
Confidence 988863 6788999999999999988876 456788899999999998876543
No 108
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.57 E-value=1.4e-15 Score=146.73 Aligned_cols=164 Identities=18% Similarity=0.212 Sum_probs=117.2
Q ss_pred cccccccCCcch---hhh-h--cccccEEEeec-CCCCC-CCC-cCCCcccceEeeeCCCCC-CcCC-CCCCccCceeee
Q psy13376 56 LSLLQESTNLAE---KLQ-I--YKLIKAVNLRI-KTLRK-IEN-LWMMENLVELDLSMNHIG-VIEN-LDQLVCLEKLDL 124 (417)
Q Consensus 56 ~~l~~~~n~i~~---l~~-l--l~~L~~L~Ls~-N~i~~-i~~-l~~l~~L~~L~Ls~N~l~-~l~~-l~~l~~L~~L~L 124 (417)
..+.++.+.+.. ++. + +++|++|++++ |.+.. ++. +..+++|++|++++|.++ .+|. +..+++|++|++
T Consensus 53 ~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 132 (313)
T 1ogq_A 53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132 (313)
T ss_dssp EEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEEC
T ss_pred EEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeC
Confidence 445677777763 332 2 78888888884 77764 443 788888888888888887 4553 788888888888
Q ss_pred eCCCCC-cccC-CccccccceeEeecCCCC-CcC-CCCCCC-CCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCC
Q psy13376 125 GYNRIE-QIQG-LDTLVNLKVLNLKMNRIE-TIE-GLDHLE-KLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVC 199 (417)
Q Consensus 125 s~N~l~-~l~~-~~~l~~L~~L~Ls~N~i~-~l~-~l~~l~-~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~ 199 (417)
++|.++ .+|. +..+++|++|++++|.++ .+| .+..++ +|++|++++|.++...+ ..+..++ |+.|++++|.++
T Consensus 133 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~-~~~~~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP-PTFANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp CSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC-GGGGGCC-CSEEECCSSEEE
T ss_pred CCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC-hHHhCCc-ccEEECcCCccc
Confidence 888887 4554 778888888888888887 444 466776 88888888888874332 3455665 888888888777
Q ss_pred CCCCccHHHHhcCCCcccccCcccC
Q psy13376 200 DKENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 200 ~~~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
...+ ..+..+++|+.|+++.+.
T Consensus 211 ~~~~---~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 211 GDAS---VLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp ECCG---GGCCTTSCCSEEECCSSE
T ss_pred CcCC---HHHhcCCCCCEEECCCCc
Confidence 5543 345667788888777664
No 109
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.56 E-value=5.5e-15 Score=159.47 Aligned_cols=101 Identities=24% Similarity=0.332 Sum_probs=42.8
Q ss_pred cccccEEEeecCCCCCC-CC-cCCCcccceEeeeCCCCCC-cCC-CCCCccCceeeeeCCCCC-cccC-CccccccceeE
Q psy13376 72 YKLIKAVNLRIKTLRKI-EN-LWMMENLVELDLSMNHIGV-IEN-LDQLVCLEKLDLGYNRIE-QIQG-LDTLVNLKVLN 145 (417)
Q Consensus 72 l~~L~~L~Ls~N~i~~i-~~-l~~l~~L~~L~Ls~N~l~~-l~~-l~~l~~L~~L~Ls~N~l~-~l~~-~~~l~~L~~L~ 145 (417)
+++|+.|++++|.++.. +. +..+++|++|++++|.++. +|. +.++++|++|++++|+++ .+|. +..+++|++|+
T Consensus 441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 520 (768)
T 3rgz_A 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE
Confidence 44444444444444422 21 4444444444444444442 221 444444444444444444 2232 44444444444
Q ss_pred eecCCCCC-cC-CCCCCCCCcEEeccCCc
Q psy13376 146 LKMNRIET-IE-GLDHLEKLELFNIAANR 172 (417)
Q Consensus 146 Ls~N~i~~-l~-~l~~l~~L~~L~Ls~N~ 172 (417)
+++|+++. +| .+..+++|++|++++|.
T Consensus 521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred CCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 44444442 22 23334444444444443
No 110
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=158.46 Aligned_cols=145 Identities=20% Similarity=0.269 Sum_probs=94.2
Q ss_pred ccccCCcchhhhhcccccEEEeecCCCCCCC--CcCCCcccceEeeeCCC-CCCcC--CCCCCccCceeeeeCCCCCccc
Q psy13376 59 LQESTNLAEKLQIYKLIKAVNLRIKTLRKIE--NLWMMENLVELDLSMNH-IGVIE--NLDQLVCLEKLDLGYNRIEQIQ 133 (417)
Q Consensus 59 ~~~~n~i~~l~~ll~~L~~L~Ls~N~i~~i~--~l~~l~~L~~L~Ls~N~-l~~l~--~l~~l~~L~~L~Ls~N~l~~l~ 133 (417)
..+.++++.++.+.+++++|++++|.|+.+. .|..+++|++|++++|. +..++ .|.++++|++|+|++|.++.+.
T Consensus 10 dcs~~~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 10 FYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH 89 (844)
T ss_dssp EESCCCSSCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred EccCCCCCCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence 3444555555555667777777777777653 26777777777777773 33442 2677777777777777777663
Q ss_pred -C-CccccccceeEeecCCCCC-cC-C--CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376 134 -G-LDTLVNLKVLNLKMNRIET-IE-G--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN 203 (417)
Q Consensus 134 -~-~~~l~~L~~L~Ls~N~i~~-l~-~--l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~ 203 (417)
. |..+++|++|+|++|.++. ++ . +..+++|++|++++|.++.++....+..+++|+.|++++|.++....
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 2 7777777777777777765 22 2 66777777777777777665432356677777777777777766543
No 111
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.55 E-value=1.7e-14 Score=149.89 Aligned_cols=162 Identities=19% Similarity=0.160 Sum_probs=129.0
Q ss_pred ccccccCCcchhhh--hcccccEEEeecCCCCCC-C-CcCCCcccceEeeeCCCCCCcC----CCCCCccCceeeeeCCC
Q psy13376 57 SLLQESTNLAEKLQ--IYKLIKAVNLRIKTLRKI-E-NLWMMENLVELDLSMNHIGVIE----NLDQLVCLEKLDLGYNR 128 (417)
Q Consensus 57 ~l~~~~n~i~~l~~--ll~~L~~L~Ls~N~i~~i-~-~l~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~N~ 128 (417)
.+.++.|.+..+.. .+++|+.|++++|.++.. + .+..+++|++|++++|+++.++ .+..+++|++|++++|.
T Consensus 335 ~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp EEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred EEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 34455666655543 278899999999999874 3 3888999999999999998765 27888999999999999
Q ss_pred CCc-ccC--CccccccceeEeecCCCCCcCCCCCC-CCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCc
Q psy13376 129 IEQ-IQG--LDTLVNLKVLNLKMNRIETIEGLDHL-EKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENV 204 (417)
Q Consensus 129 l~~-l~~--~~~l~~L~~L~Ls~N~i~~l~~l~~l-~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 204 (417)
++. +|. +..+++|++|++++|+++... +..+ ++|++|++++|+|+.+|. .+..+++|+.|++++|+++.+|..
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~~L~~L~L~~N~l~~ip~--~~~~l~~L~~L~L~~N~l~~l~~~ 491 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSV-FRCLPPKVKVLDLHNNRIMSIPK--DVTHLQALQELNVASNQLKSVPDG 491 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCCCGGG-GSSCCTTCSEEECCSSCCCCCCT--TTTSSCCCSEEECCSSCCCCCCTT
T ss_pred CCCccChhhhcCcccCCEEECCCCCCCcch-hhhhcCcCCEEECCCCcCcccCh--hhcCCCCCCEEECCCCCCCCCCHH
Confidence 987 774 788899999999999986532 2233 689999999999998876 334899999999999999988872
Q ss_pred cHHHHhcCCCcccccCcccC
Q psy13376 205 DGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 205 ~~~~~~~l~~L~~Ld~~~~~ 224 (417)
.+..+++|+.|+++.++
T Consensus 492 ---~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 492 ---VFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp ---STTTCTTCCCEECCSCC
T ss_pred ---HHhcCCCCCEEEecCCC
Confidence 46788999999988765
No 112
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=3.4e-14 Score=127.37 Aligned_cols=120 Identities=24% Similarity=0.295 Sum_probs=108.0
Q ss_pred ccccccCCcchhhhh-cccccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcc
Q psy13376 57 SLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQI 132 (417)
Q Consensus 57 ~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l 132 (417)
.+..+.+++..++.. .++++.|++++|.|+.++. +..+++|+.|++++|.|+.++. |.++++|++|+|++|.|+.+
T Consensus 14 ~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i 93 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93 (193)
T ss_dssp EEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred EEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEe
Confidence 346777888887765 7899999999999999975 8999999999999999999874 99999999999999999999
Q ss_pred cC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcc
Q psy13376 133 QG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSL 176 (417)
Q Consensus 133 ~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l 176 (417)
+. |..+++|++|+|++|.|+.++ .+..+++|++|++++|.+...
T Consensus 94 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 85 999999999999999999997 388999999999999998753
No 113
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.52 E-value=1e-14 Score=149.87 Aligned_cols=137 Identities=18% Similarity=0.241 Sum_probs=116.2
Q ss_pred ccccccCCcchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCCc
Q psy13376 57 SLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIEQ 131 (417)
Q Consensus 57 ~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~ 131 (417)
.++++.|+++.++.- .+++++|++++|.++.+++ +..+++|++|++++|+++.++ .|.++++|++|++++|+++.
T Consensus 4 ~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 83 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK 83 (520)
T ss_dssp EEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE
T ss_pred eEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee
Confidence 456778888877765 7899999999999998864 889999999999999999873 48899999999999999999
Q ss_pred ccCCccccccceeEeecCCCCCc--C-CCCCCCCCcEEeccCCccCcchhhhhhhCCCCc--CEEeccCCCC
Q psy13376 132 IQGLDTLVNLKVLNLKMNRIETI--E-GLDHLEKLELFNIAANRIQSLASLVYLRRFKHL--GRLNIERNPV 198 (417)
Q Consensus 132 l~~~~~l~~L~~L~Ls~N~i~~l--~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L--~~L~L~~N~l 198 (417)
+|.. .+++|++|++++|.++.+ | .++.+++|++|++++|.++.. .+..+++| +.|++++|.+
T Consensus 84 lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 84 ISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp EECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG----GGGGGTTSCEEEEEEEECTT
T ss_pred cCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh----hccccccceeeEEEeecccc
Confidence 8876 889999999999999875 3 588999999999999998772 34566677 9999999988
No 114
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.50 E-value=6.8e-15 Score=145.68 Aligned_cols=165 Identities=14% Similarity=0.126 Sum_probs=89.6
Q ss_pred ccccccCCcch-----hhhh---cccccEEEeecCCCCCCCC------cCCC---------cccceEeeeCCCCC--CcC
Q psy13376 57 SLLQESTNLAE-----KLQI---YKLIKAVNLRIKTLRKIEN------LWMM---------ENLVELDLSMNHIG--VIE 111 (417)
Q Consensus 57 ~l~~~~n~i~~-----l~~l---l~~L~~L~Ls~N~i~~i~~------l~~l---------~~L~~L~Ls~N~l~--~l~ 111 (417)
.|.++.|++.. +... +++|++|++++|.++.... +..+ ++|++|++++|.++ .++
T Consensus 98 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 177 (386)
T 2ca6_A 98 TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177 (386)
T ss_dssp EEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred EEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence 34455566554 2222 5666666666666653211 2222 56666666666665 222
Q ss_pred ----CCCCCccCceeeeeCCCCC------ccc-CCccccccceeEeecCCCC-----CcC-CCCCCCCCcEEeccCCccC
Q psy13376 112 ----NLDQLVCLEKLDLGYNRIE------QIQ-GLDTLVNLKVLNLKMNRIE-----TIE-GLDHLEKLELFNIAANRIQ 174 (417)
Q Consensus 112 ----~l~~l~~L~~L~Ls~N~l~------~l~-~~~~l~~L~~L~Ls~N~i~-----~l~-~l~~l~~L~~L~Ls~N~i~ 174 (417)
.+..+++|++|++++|.++ -++ .+..+++|++|+|++|.++ .++ .+..+++|++|++++|.|+
T Consensus 178 ~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence 2445666666666666665 233 3556666666666666663 222 3556666666666666666
Q ss_pred cchhh---hhhh--CCCCcCEEeccCCCCCC-----CCCccHHHHhcCCCcccccCcccC
Q psy13376 175 SLASL---VYLR--RFKHLGRLNIERNPVCD-----KENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 175 ~l~~~---~~l~--~l~~L~~L~L~~N~l~~-----~~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
..... ..+. .+++|+.|++++|+++. ++. .....+++|+.|+++.+.
T Consensus 258 ~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~---~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 258 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT---VIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH---HHHHHCTTCCEEECTTSB
T ss_pred hhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH---HHHhcCCCceEEEccCCc
Confidence 54211 1222 25666666666666655 222 222446666666665544
No 115
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.50 E-value=3.7e-14 Score=138.79 Aligned_cols=173 Identities=18% Similarity=0.167 Sum_probs=74.4
Q ss_pred ccccc-ccceeeccccccCCCCch--hhhHHHHHhcCC---CC---CChhhhhccccccccccccccccCCcchhhhh--
Q psy13376 3 IPTTV-DRIKKIGLIKDRAGDEST--LKNLAQVLQNAP---AI---INEDLLSKKGVISENLLSLLQESTNLAEKLQI-- 71 (417)
Q Consensus 3 ip~~~-~~l~~l~l~~n~l~dl~~--L~~l~~L~~~~~---~~---~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~l-- 71 (417)
||..+ +++++++++.|+|+.+++ +.++.+|..+.. .+ +....+.++ ......+....|++..+..-
T Consensus 24 iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L---~~l~~~l~~~~N~l~~l~~~~f 100 (350)
T 4ay9_X 24 IPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL---PKLHEIRIEKANNLLYINPEAF 100 (350)
T ss_dssp CCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC---TTCCEEEEEEETTCCEECTTSB
T ss_pred cCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc---hhhhhhhcccCCcccccCchhh
Confidence 45444 467788888888776653 444433333220 00 011111111 00000112333444444221
Q ss_pred --cccccEEEeecCCCCCCCC--cCCCcccceEeeeC-CCCCCcCC--CCCCc-cCceeeeeCCCCCcccC-Cccccccc
Q psy13376 72 --YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSM-NHIGVIEN--LDQLV-CLEKLDLGYNRIEQIQG-LDTLVNLK 142 (417)
Q Consensus 72 --l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~-N~l~~l~~--l~~l~-~L~~L~Ls~N~l~~l~~-~~~l~~L~ 142 (417)
+++|+.|++++|+++.++. +....++..|++.+ +.++.++. |..+. .++.|++++|+|+.++. .....+|+
T Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~ 180 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLD 180 (350)
T ss_dssp CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEE
T ss_pred hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchh
Confidence 4445555555555554443 22333344444433 34444432 33332 34455555555555543 22333455
Q ss_pred eeEee-cCCCCCcC--CCCCCCCCcEEeccCCccCcchh
Q psy13376 143 VLNLK-MNRIETIE--GLDHLEKLELFNIAANRIQSLAS 178 (417)
Q Consensus 143 ~L~Ls-~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~ 178 (417)
+|+++ +|.++.++ .|..+++|++|++++|+|+.+|.
T Consensus 181 ~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp EEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred HHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence 55554 24444443 24455555555555555555443
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.50 E-value=8.7e-14 Score=124.43 Aligned_cols=122 Identities=26% Similarity=0.334 Sum_probs=107.8
Q ss_pred ccccccCCcchhhhh-cccccEEEeecCCCCCCCC---cCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCC
Q psy13376 57 SLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN---LWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIE 130 (417)
Q Consensus 57 ~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~---l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~ 130 (417)
.+..+.+++..++.. ..+++.|++++|.|+.++. +..+++|++|++++|.|+.+. .|.++++|++|+|++|+|+
T Consensus 12 ~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 91 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91 (192)
T ss_dssp EEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC
T ss_pred EEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCC
Confidence 456777888877765 6799999999999999864 889999999999999999884 3999999999999999999
Q ss_pred cccC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchh
Q psy13376 131 QIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLAS 178 (417)
Q Consensus 131 ~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~ 178 (417)
.++. |..+++|++|+|++|+|+.+. .+..+++|++|++++|.++....
T Consensus 92 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 8875 889999999999999999873 58899999999999999985433
No 117
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.50 E-value=5.1e-16 Score=156.84 Aligned_cols=151 Identities=23% Similarity=0.178 Sum_probs=78.9
Q ss_pred cccEEEeecCCCCCC-----C-CcCCCcccceEeeeCCCCCCcC--C-----CCCCccCceeeeeCCCCCccc-----C-
Q psy13376 74 LIKAVNLRIKTLRKI-----E-NLWMMENLVELDLSMNHIGVIE--N-----LDQLVCLEKLDLGYNRIEQIQ-----G- 134 (417)
Q Consensus 74 ~L~~L~Ls~N~i~~i-----~-~l~~l~~L~~L~Ls~N~l~~l~--~-----l~~l~~L~~L~Ls~N~l~~l~-----~- 134 (417)
+|++|++++|.++.. + .+..+++|++|++++|.++... . ....++|++|++++|.++... .
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 466666666666642 1 2556666666666666665321 1 222445666666666665422 1
Q ss_pred CccccccceeEeecCCCCCcC--CC-----CCCCCCcEEeccCCccCcchh---hhhhhCCCCcCEEeccCCCCCCCCCc
Q psy13376 135 LDTLVNLKVLNLKMNRIETIE--GL-----DHLEKLELFNIAANRIQSLAS---LVYLRRFKHLGRLNIERNPVCDKENV 204 (417)
Q Consensus 135 ~~~l~~L~~L~Ls~N~i~~l~--~l-----~~l~~L~~L~Ls~N~i~~l~~---~~~l~~l~~L~~L~L~~N~l~~~~~~ 204 (417)
+..+++|++|++++|.++... .+ ...++|++|++++|.++.... ...+..+++|++|++++|++.+....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 445566666666666655431 11 124466666666666665321 12344566666666666665442110
Q ss_pred c--HHHHhcCCCcccccCcccC
Q psy13376 205 D--GFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 205 ~--~~~~~~l~~L~~Ld~~~~~ 224 (417)
. ......+++|+.|+++.+.
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhcCCCCceEEECcCCC
Confidence 0 0111235666666666554
No 118
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=1.4e-13 Score=121.19 Aligned_cols=121 Identities=22% Similarity=0.311 Sum_probs=107.4
Q ss_pred ccccccCCcchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCc
Q psy13376 57 SLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQ 131 (417)
Q Consensus 57 ~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~ 131 (417)
.+..+.+++..++.. .++++.|++++|.++.++. +..+++|++|++++|.++.++. +..+++|++|++++|.++.
T Consensus 11 ~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 90 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90 (177)
T ss_dssp EEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc
Confidence 345677778777655 8899999999999999875 7899999999999999999875 7899999999999999999
Q ss_pred ccC--CccccccceeEeecCCCCCcCC--CCCCCCCcEEeccCCccCcch
Q psy13376 132 IQG--LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLA 177 (417)
Q Consensus 132 l~~--~~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~ 177 (417)
++. +..+++|++|++++|.++.++. +..+++|++|++++|.+....
T Consensus 91 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 886 7899999999999999999874 688999999999999988643
No 119
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.49 E-value=7.7e-14 Score=144.98 Aligned_cols=144 Identities=22% Similarity=0.291 Sum_probs=110.4
Q ss_pred cccccccCCcchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCC
Q psy13376 56 LSLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIE 130 (417)
Q Consensus 56 ~~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~ 130 (417)
..++.+.++++.++.. .+++++|++++|.|+.++. |..+++|++|++++|.++.++ .|.++++|++|++++|.++
T Consensus 34 ~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 113 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113 (562)
T ss_dssp CEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred cEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC
Confidence 3456777888877765 7788888888888888863 888888888888888888774 3888888888888888888
Q ss_pred cccCCccccccceeEeecCCCCCcC---CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCC--CCCC
Q psy13376 131 QIQGLDTLVNLKVLNLKMNRIETIE---GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPV--CDKE 202 (417)
Q Consensus 131 ~l~~~~~l~~L~~L~Ls~N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l--~~~~ 202 (417)
.+|.. .+++|++|++++|+++.++ .++.+++|++|++++|.++.. .+..+..+ +|+.|++++|.+ +...
T Consensus 114 ~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~L-~L~~L~L~~n~l~~~~~~ 187 (562)
T 3a79_B 114 NISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-DLLPVAHL-HLSCILLDLVSYHIKGGE 187 (562)
T ss_dssp EECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-TTGGGTTS-CEEEEEEEESSCCCCSSS
T ss_pred ccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-chhhhhhc-eeeEEEeecccccccccC
Confidence 88766 7888888888888888764 478888888888888888763 22233333 348888888888 5443
No 120
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=7.6e-15 Score=145.33 Aligned_cols=165 Identities=16% Similarity=0.123 Sum_probs=128.6
Q ss_pred cccccccCCcchhhhh--------c---------ccccEEEeecCCCCC--CC----CcCCCcccceEeeeCCCCC----
Q psy13376 56 LSLLQESTNLAEKLQI--------Y---------KLIKAVNLRIKTLRK--IE----NLWMMENLVELDLSMNHIG---- 108 (417)
Q Consensus 56 ~~l~~~~n~i~~l~~l--------l---------~~L~~L~Ls~N~i~~--i~----~l~~l~~L~~L~Ls~N~l~---- 108 (417)
..|.++.|.+...... + ++|++|++++|.++. ++ .+..+++|++|++++|.++
T Consensus 125 ~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~ 204 (386)
T 2ca6_A 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI 204 (386)
T ss_dssp CEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHH
T ss_pred CEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHH
Confidence 3556888888643321 2 899999999999973 33 2667899999999999998
Q ss_pred --CcC-CCCCCccCceeeeeCCCCC-----cccC-CccccccceeEeecCCCCCc-----C-CC--CCCCCCcEEeccCC
Q psy13376 109 --VIE-NLDQLVCLEKLDLGYNRIE-----QIQG-LDTLVNLKVLNLKMNRIETI-----E-GL--DHLEKLELFNIAAN 171 (417)
Q Consensus 109 --~l~-~l~~l~~L~~L~Ls~N~l~-----~l~~-~~~l~~L~~L~Ls~N~i~~l-----~-~l--~~l~~L~~L~Ls~N 171 (417)
.++ .+..+++|++|+|++|.++ .++. +..+++|++|+|++|.|+.. + .+ +.+++|++|++++|
T Consensus 205 ~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n 284 (386)
T 2ca6_A 205 EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 284 (386)
T ss_dssp HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred HHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC
Confidence 244 6889999999999999994 4554 88899999999999999875 2 34 45899999999999
Q ss_pred ccCc-----chhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCc
Q psy13376 172 RIQS-----LASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNH 221 (417)
Q Consensus 172 ~i~~-----l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~ 221 (417)
.|+. ++. ....++++|+.|++++|+++...++.......++.++..++.
T Consensus 285 ~i~~~g~~~l~~-~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~ 338 (386)
T 2ca6_A 285 EIELDAVRTLKT-VIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELD 338 (386)
T ss_dssp CCBHHHHHHHHH-HHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEEC
T ss_pred cCCHHHHHHHHH-HHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhh
Confidence 9998 544 233668999999999999998876545555556665544443
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.48 E-value=6.7e-14 Score=145.80 Aligned_cols=122 Identities=25% Similarity=0.324 Sum_probs=110.3
Q ss_pred cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCcccCCccccccceeEeecCC
Q psy13376 72 YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNR 150 (417)
Q Consensus 72 l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~ 150 (417)
...|+.|++++|.|+.+|.+..+++|+.|+|++|.|+.+|. ++.+++|+.|+|++|.|+.+|.+..+++|+.|+|++|+
T Consensus 440 ~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 440 YADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR 519 (567)
T ss_dssp HTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred ccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCC
Confidence 34689999999999999999999999999999999999985 99999999999999999999999999999999999999
Q ss_pred CCCc--C-CCCCCCCCcEEeccCCccCcchhh--hhhhCCCCcCEEec
Q psy13376 151 IETI--E-GLDHLEKLELFNIAANRIQSLASL--VYLRRFKHLGRLNI 193 (417)
Q Consensus 151 i~~l--~-~l~~l~~L~~L~Ls~N~i~~l~~~--~~l~~l~~L~~L~L 193 (417)
|+.+ | .+..+++|+.|++++|.++..++. ..+..+|+|+.|++
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9998 4 589999999999999999987652 23456899999875
No 122
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=1.3e-15 Score=136.83 Aligned_cols=139 Identities=32% Similarity=0.389 Sum_probs=118.9
Q ss_pred CCcchhhhh---cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCcccCCccc
Q psy13376 63 TNLAEKLQI---YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQGLDTL 138 (417)
Q Consensus 63 n~i~~l~~l---l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~~~~l 138 (417)
+.+..++.. +++|+.|++++|.++.++.+..+++|++|++++|.++.++. +..+++|++|++++|.++.++.+..+
T Consensus 35 ~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l 114 (198)
T 1ds9_A 35 PPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKL 114 (198)
T ss_dssp TTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHH
T ss_pred CcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccC
Confidence 344444433 89999999999999999988999999999999999999987 66779999999999999999888899
Q ss_pred cccceeEeecCCCCCcC---CCCCCCCCcEEeccCCccCcchh---------hhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376 139 VNLKVLNLKMNRIETIE---GLDHLEKLELFNIAANRIQSLAS---------LVYLRRFKHLGRLNIERNPVCDKEN 203 (417)
Q Consensus 139 ~~L~~L~Ls~N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~---------~~~l~~l~~L~~L~L~~N~l~~~~~ 203 (417)
++|++|++++|.++.++ .+..+++|++|++++|.++...+ ...+..+++|+.|+ +|+++....
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~e~ 189 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVDER 189 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTTTT
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHHHH
Confidence 99999999999999875 48899999999999999976532 12367899999987 888877554
No 123
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.47 E-value=1.2e-15 Score=154.15 Aligned_cols=143 Identities=23% Similarity=0.273 Sum_probs=74.4
Q ss_pred cccccCCcchhhhh-----cccccEEEeecCCCCCC-----CC-cCCCcccceEeeeCCCCCCcC--C-CCCCc----cC
Q psy13376 58 LLQESTNLAEKLQI-----YKLIKAVNLRIKTLRKI-----EN-LWMMENLVELDLSMNHIGVIE--N-LDQLV----CL 119 (417)
Q Consensus 58 l~~~~n~i~~l~~l-----l~~L~~L~Ls~N~i~~i-----~~-l~~l~~L~~L~Ls~N~l~~l~--~-l~~l~----~L 119 (417)
++++.+++...... +++|++|++++|.++.. +. +..+++|++|++++|.++... . +..++ +|
T Consensus 8 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L 87 (461)
T 1z7x_W 8 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKI 87 (461)
T ss_dssp EEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCC
T ss_pred hhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCce
Confidence 34555555443321 56666666666666532 22 445566666666666665421 1 11222 46
Q ss_pred ceeeeeCCCCCc-----ccC-CccccccceeEeecCCCCCcC------C-CCCCCCCcEEeccCCccCcchh---hhhhh
Q psy13376 120 EKLDLGYNRIEQ-----IQG-LDTLVNLKVLNLKMNRIETIE------G-LDHLEKLELFNIAANRIQSLAS---LVYLR 183 (417)
Q Consensus 120 ~~L~Ls~N~l~~-----l~~-~~~l~~L~~L~Ls~N~i~~l~------~-l~~l~~L~~L~Ls~N~i~~l~~---~~~l~ 183 (417)
++|++++|.++. ++. +..+++|++|++++|.++... . ....++|++|++++|.++.... ...+.
T Consensus 88 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 167 (461)
T 1z7x_W 88 QKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR 167 (461)
T ss_dssp CEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred eEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHh
Confidence 666666666653 222 556666666666666655321 0 2234456666666666654321 12334
Q ss_pred CCCCcCEEeccCCCCCC
Q psy13376 184 RFKHLGRLNIERNPVCD 200 (417)
Q Consensus 184 ~l~~L~~L~L~~N~l~~ 200 (417)
.+++|++|++++|++.+
T Consensus 168 ~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 168 AKPDFKELTVSNNDINE 184 (461)
T ss_dssp HCTTCCEEECCSSBCHH
T ss_pred hCCCCCEEECcCCCcch
Confidence 55666666666666543
No 124
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=2.8e-15 Score=147.34 Aligned_cols=166 Identities=17% Similarity=0.227 Sum_probs=105.3
Q ss_pred cccCCcchhh-hh---cccccEEEeecCCCCCCCC------cCCCc-ccceEeeeCCCCCCcC--CCCCC-----ccCce
Q psy13376 60 QESTNLAEKL-QI---YKLIKAVNLRIKTLRKIEN------LWMME-NLVELDLSMNHIGVIE--NLDQL-----VCLEK 121 (417)
Q Consensus 60 ~~~n~i~~l~-~l---l~~L~~L~Ls~N~i~~i~~------l~~l~-~L~~L~Ls~N~l~~l~--~l~~l-----~~L~~ 121 (417)
++.|.+.... .. .++|++|++++|.++..+. +..++ +|++|++++|.++... .+..+ ++|++
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 84 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence 4445555332 22 4558888888888877642 55666 7888888888877653 23333 77888
Q ss_pred eeeeCCCCCcccC------Cccc-cccceeEeecCCCCCcCC------CCC-CCCCcEEeccCCccCcchh---hhhhhC
Q psy13376 122 LDLGYNRIEQIQG------LDTL-VNLKVLNLKMNRIETIEG------LDH-LEKLELFNIAANRIQSLAS---LVYLRR 184 (417)
Q Consensus 122 L~Ls~N~l~~l~~------~~~l-~~L~~L~Ls~N~i~~l~~------l~~-l~~L~~L~Ls~N~i~~l~~---~~~l~~ 184 (417)
|++++|.++..+. +..+ ++|++|++++|.++..+. +.. .++|++|++++|.+++... ...+..
T Consensus 85 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 164 (362)
T 3goz_A 85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAA 164 (362)
T ss_dssp EECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHT
T ss_pred EECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhc
Confidence 8888888775542 3334 678888888888776641 334 3578888888888774322 123345
Q ss_pred CC-CcCEEeccCCCCCCCCCccH-HHHhcC-CCcccccCcccCH
Q psy13376 185 FK-HLGRLNIERNPVCDKENVDG-FAIAMV-PQLQCYNNHIILE 225 (417)
Q Consensus 185 l~-~L~~L~L~~N~l~~~~~~~~-~~~~~l-~~L~~Ld~~~~~~ 225 (417)
++ +|++|++++|.++....... ..+..+ ++|+.||++.+..
T Consensus 165 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i 208 (362)
T 3goz_A 165 IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL 208 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred CCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence 54 78888888888776553211 134445 4788888777764
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.43 E-value=5.1e-14 Score=150.91 Aligned_cols=107 Identities=21% Similarity=0.306 Sum_probs=93.0
Q ss_pred cccccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCcccC-CccccccceeEeec
Q psy13376 72 YKLIKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQG-LDTLVNLKVLNLKM 148 (417)
Q Consensus 72 l~~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~-~~~l~~L~~L~Ls~ 148 (417)
++.|+.|+|++|.+..++. +..+++|++|+|++|.|+.+|. |..+++|++|+|++|.|+.+|. +..+++|++|+|++
T Consensus 223 l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~ 302 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD 302 (727)
T ss_dssp CCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS
T ss_pred CCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC
Confidence 7889999999999998875 6688999999999999998875 8889999999999999998886 88899999999999
Q ss_pred CCCCCcC-CCCCCCCCcEEeccCCccCcchh
Q psy13376 149 NRIETIE-GLDHLEKLELFNIAANRIQSLAS 178 (417)
Q Consensus 149 N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~ 178 (417)
|.|+.+| .|..+++|++|+|++|.|+...+
T Consensus 303 N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 303 NMVTTLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp SCCCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred CCCCccChhhhcCCCccEEeCCCCccCCCCh
Confidence 9999887 58889999999999999886443
No 126
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.42 E-value=9e-14 Score=136.57 Aligned_cols=201 Identities=16% Similarity=0.133 Sum_probs=124.3
Q ss_pred ccceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhccccccccccccccccCCcchhhh--h--c-----ccccEE
Q psy13376 8 DRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQ--I--Y-----KLIKAV 78 (417)
Q Consensus 8 ~~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~--l--l-----~~L~~L 78 (417)
.+++.++++.|.+++.+.-.-+..+..... ++ ..+.++.|++..... + + ++|++|
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~---------~L-------~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 85 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPA---------SV-------TSLNLSGNSLGFKNSDELVQILAAIPANVTSL 85 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCT---------TC-------CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCC---------ce-------eEEECcCCCCCHHHHHHHHHHHhccCCCccEE
Confidence 347888888888887764322211111110 11 234566666665322 2 2 778888
Q ss_pred EeecCCCCCCCC------cCCC-cccceEeeeCCCCCCcCC------CCC-CccCceeeeeCCCCCccc-----C-Cccc
Q psy13376 79 NLRIKTLRKIEN------LWMM-ENLVELDLSMNHIGVIEN------LDQ-LVCLEKLDLGYNRIEQIQ-----G-LDTL 138 (417)
Q Consensus 79 ~Ls~N~i~~i~~------l~~l-~~L~~L~Ls~N~l~~l~~------l~~-l~~L~~L~Ls~N~l~~l~-----~-~~~l 138 (417)
++++|.++.... +..+ ++|++|++++|.++..+. +.. .++|++|++++|.++... . +..+
T Consensus 86 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 165 (362)
T 3goz_A 86 NLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAI 165 (362)
T ss_dssp ECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTS
T ss_pred ECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcC
Confidence 888888876542 3344 788888888888876642 334 358888888888887432 1 3444
Q ss_pred c-ccceeEeecCCCCCcC------CCCCC-CCCcEEeccCCccCcchhh---hhhhC-CCCcCEEeccCCCCCCCCCccH
Q psy13376 139 V-NLKVLNLKMNRIETIE------GLDHL-EKLELFNIAANRIQSLASL---VYLRR-FKHLGRLNIERNPVCDKENVDG 206 (417)
Q Consensus 139 ~-~L~~L~Ls~N~i~~l~------~l~~l-~~L~~L~Ls~N~i~~l~~~---~~l~~-l~~L~~L~L~~N~l~~~~~~~~ 206 (417)
+ +|++|+|++|+++... .+..+ ++|++|++++|.|++.... ..+.. .++|+.|++++|++++.+....
T Consensus 166 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 245 (362)
T 3goz_A 166 PANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL 245 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHH
T ss_pred CccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHH
Confidence 4 7888888888887654 23445 4888888888888772210 12333 4578888888888877654111
Q ss_pred -HHHhcCCCcccccCcccC
Q psy13376 207 -FAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 207 -~~~~~l~~L~~Ld~~~~~ 224 (417)
..+..+++|+.|+++.+.
T Consensus 246 ~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 246 KLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHTTTTTTTCSEEEEEHHH
T ss_pred HHHHhcCCCccEEEeccCC
Confidence 123556778877776653
No 127
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.40 E-value=6e-13 Score=130.10 Aligned_cols=160 Identities=17% Similarity=0.122 Sum_probs=82.4
Q ss_pred cccCCcchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCC-cCC--CCCCccCce-eeeeCCCCCcc
Q psy13376 60 QESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGV-IEN--LDQLVCLEK-LDLGYNRIEQI 132 (417)
Q Consensus 60 ~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~-l~~--l~~l~~L~~-L~Ls~N~l~~l 132 (417)
.+.++++.++.- .++++.|+|++|+|+.++. |.++++|++|+|++|.+.. ++. |.+++++.+ +.+++|+++.+
T Consensus 16 C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 16 CQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp EESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred ecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence 344444444432 4555556666666655543 5555566666666655532 332 455555443 33445555555
Q ss_pred cC--CccccccceeEeecCCCCCcCC---------------------------CCCC-CCCcEEeccCCccCcchhhhhh
Q psy13376 133 QG--LDTLVNLKVLNLKMNRIETIEG---------------------------LDHL-EKLELFNIAANRIQSLASLVYL 182 (417)
Q Consensus 133 ~~--~~~l~~L~~L~Ls~N~i~~l~~---------------------------l~~l-~~L~~L~Ls~N~i~~l~~~~~l 182 (417)
++ |..+++|++|++++|+++.++. +..+ ..++.|++++|+|+.++. ..
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~-~~- 173 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN-SA- 173 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT-TS-
T ss_pred CchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh-hh-
Confidence 42 5555555555555555554432 2232 245556666666665554 12
Q ss_pred hCCCCcCEEeccC-CCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376 183 RRFKHLGRLNIER-NPVCDKENVDGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 183 ~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~ 224 (417)
....+|+.+++.+ |.++.++. .++..+++|+.||++.+.
T Consensus 174 f~~~~L~~l~l~~~n~l~~i~~---~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 174 FNGTQLDELNLSDNNNLEELPN---DVFHGASGPVILDISRTR 213 (350)
T ss_dssp STTEEEEEEECTTCTTCCCCCT---TTTTTEECCSEEECTTSC
T ss_pred ccccchhHHhhccCCcccCCCH---HHhccCcccchhhcCCCC
Confidence 2334566666653 55555554 234556666666666554
No 128
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=1.5e-12 Score=114.67 Aligned_cols=102 Identities=21% Similarity=0.319 Sum_probs=55.3
Q ss_pred ceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcCC--CCCCCCCcEEeccCCc
Q psy13376 98 VELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANR 172 (417)
Q Consensus 98 ~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~ 172 (417)
+.+++++|.++.+|. +. ++|++|+|++|.|+.+++ |..+++|++|+|++|+|+.++. |..+++|++|++++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 445555555555543 21 455555555555555532 5555555555555555555542 4555556666666665
Q ss_pred cCcchhhhhhhCCCCcCEEeccCCCCCCCC
Q psy13376 173 IQSLASLVYLRRFKHLGRLNIERNPVCDKE 202 (417)
Q Consensus 173 i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~ 202 (417)
|+.++. ..+..+++|++|++++|++...+
T Consensus 93 l~~l~~-~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 93 LKSIPR-GAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCT-TTTTTCTTCSEEECCSSCBCTTB
T ss_pred cceeCH-HHhccccCCCEEEeCCCCccccc
Confidence 555544 23455556666666666655544
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=3.4e-13 Score=144.51 Aligned_cols=111 Identities=25% Similarity=0.283 Sum_probs=100.6
Q ss_pred cCCCcccceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCcccC-CccccccceeEeecCCCCCcC-CCCCCCCCcEEe
Q psy13376 91 LWMMENLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQG-LDTLVNLKVLNLKMNRIETIE-GLDHLEKLELFN 167 (417)
Q Consensus 91 l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~-~~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~ 167 (417)
+..++.|+.|+|++|.+..++. +..+++|++|+|++|.|+.+|. |..+++|++|+|++|.|+.+| .+..+++|++|+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 7889999999999999999974 7799999999999999999986 999999999999999999997 689999999999
Q ss_pred ccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376 168 IAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN 203 (417)
Q Consensus 168 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~ 203 (417)
|++|.|+.+|. .+..+++|+.|+|++|+++..++
T Consensus 300 L~~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 300 FFDNMVTTLPW--EFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp CCSSCCCCCCS--STTSCTTCCCEECTTSCCCSHHH
T ss_pred CCCCCCCccCh--hhhcCCCccEEeCCCCccCCCCh
Confidence 99999999876 47999999999999999987543
No 130
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=1.6e-12 Score=114.00 Aligned_cols=103 Identities=20% Similarity=0.282 Sum_probs=57.0
Q ss_pred cceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcCC--CCCCCCCcEEeccCC
Q psy13376 97 LVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAAN 171 (417)
Q Consensus 97 L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N 171 (417)
.+.+++++|.++.+|. + .++|++|+|++|.|+.++. |..+++|++|+|++|+|+.++. |..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3455555555555543 2 2455555555555555532 5555566666666666555542 455566666666666
Q ss_pred ccCcchhhhhhhCCCCcCEEeccCCCCCCCC
Q psy13376 172 RIQSLASLVYLRRFKHLGRLNIERNPVCDKE 202 (417)
Q Consensus 172 ~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~ 202 (417)
+|+.++. ..+..+++|+.|++++|++...+
T Consensus 89 ~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 89 QLKSIPR-GAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCCT-TTTTTCTTCCEEECCSSCBCTTB
T ss_pred ccCEeCH-HHhcCCCCCCEEEeCCCCCCCCc
Confidence 6665544 33455566666666666665544
No 131
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.37 E-value=9e-14 Score=134.49 Aligned_cols=164 Identities=16% Similarity=0.194 Sum_probs=95.3
Q ss_pred ccccccCCcch--hhhh---cccccEEEeecCCCCCC--CCcCCCcccceEeeeCC-CCCC--cCC-CCCCccCceeeee
Q psy13376 57 SLLQESTNLAE--KLQI---YKLIKAVNLRIKTLRKI--ENLWMMENLVELDLSMN-HIGV--IEN-LDQLVCLEKLDLG 125 (417)
Q Consensus 57 ~l~~~~n~i~~--l~~l---l~~L~~L~Ls~N~i~~i--~~l~~l~~L~~L~Ls~N-~l~~--l~~-l~~l~~L~~L~Ls 125 (417)
.+.++.|.+.. +... +++|++|++++|.++.. ..+..+++|++|++++| .++. ++. +..+++|++|+++
T Consensus 97 ~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~ 176 (336)
T 2ast_B 97 HMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 176 (336)
T ss_dssp EEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC
T ss_pred EEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC
Confidence 34455665543 3322 66777777777766532 12556677777777777 5653 333 5566777777777
Q ss_pred CC-CCCc--ccC-Ccccc-ccceeEeecCC--CC--CcC-CCCCCCCCcEEeccCCc-cCcchhhhhhhCCCCcCEEecc
Q psy13376 126 YN-RIEQ--IQG-LDTLV-NLKVLNLKMNR--IE--TIE-GLDHLEKLELFNIAANR-IQSLASLVYLRRFKHLGRLNIE 194 (417)
Q Consensus 126 ~N-~l~~--l~~-~~~l~-~L~~L~Ls~N~--i~--~l~-~l~~l~~L~~L~Ls~N~-i~~l~~~~~l~~l~~L~~L~L~ 194 (417)
+| .++. ++. +..++ +|++|++++|. ++ .++ .+..+++|++|++++|. +++.. +..+..+++|++|+++
T Consensus 177 ~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~ 255 (336)
T 2ast_B 177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC-FQEFFQLNYLQHLSLS 255 (336)
T ss_dssp CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG-GGGGGGCTTCCEEECT
T ss_pred CCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH-HHHHhCCCCCCEeeCC
Confidence 77 6664 333 55666 77777777773 33 222 24556677777777776 44322 2345666777777777
Q ss_pred CCCCCCCCCccHHHHhcCCCcccccCccc
Q psy13376 195 RNPVCDKENVDGFAIAMVPQLQCYNNHII 223 (417)
Q Consensus 195 ~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~ 223 (417)
+|. .+.+.....+..+++|+.|+++.+
T Consensus 256 ~~~--~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 256 RCY--DIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCT--TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCC--CCCHHHHHHHhcCCCCCEEeccCc
Confidence 775 111111123456777777776655
No 132
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=2.7e-12 Score=112.98 Aligned_cols=101 Identities=26% Similarity=0.326 Sum_probs=90.6
Q ss_pred ccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC--CccccccceeEeecC
Q psy13376 75 IKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN 149 (417)
Q Consensus 75 L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N 149 (417)
-+.+++++|+++.+|. +. ++|++|++++|.|+.+++ |.++++|++|+|++|+|+.++. |..+++|++|+|++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3689999999999986 43 899999999999998853 8999999999999999999986 789999999999999
Q ss_pred CCCCcCC--CCCCCCCcEEeccCCccCcch
Q psy13376 150 RIETIEG--LDHLEKLELFNIAANRIQSLA 177 (417)
Q Consensus 150 ~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~ 177 (417)
+|+.++. +..+++|++|++++|.+...+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 9999973 889999999999999998654
No 133
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.35 E-value=8.1e-14 Score=134.79 Aligned_cols=150 Identities=16% Similarity=0.164 Sum_probs=77.4
Q ss_pred cccccEEEeecCCCCC--CCC-cCCCcccceEeeeCCCCCCc-C-CCCCCccCceeeeeCC-CCCc--ccC-Cccccccc
Q psy13376 72 YKLIKAVNLRIKTLRK--IEN-LWMMENLVELDLSMNHIGVI-E-NLDQLVCLEKLDLGYN-RIEQ--IQG-LDTLVNLK 142 (417)
Q Consensus 72 l~~L~~L~Ls~N~i~~--i~~-l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N-~l~~--l~~-~~~l~~L~ 142 (417)
+++|++|++++|.++. ++. +..+++|++|++++|.++.. + .+..+++|++|++++| .++. ++. +..+++|+
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 4556666666665543 222 45556666666666655522 1 2455566666666666 4552 333 45556666
Q ss_pred eeEeecC-CCCC--cC-CCCCCC-CCcEEeccCC--ccCcchhhhhhhCCCCcCEEeccCCC-CCCCCCccHHHHhcCCC
Q psy13376 143 VLNLKMN-RIET--IE-GLDHLE-KLELFNIAAN--RIQSLASLVYLRRFKHLGRLNIERNP-VCDKENVDGFAIAMVPQ 214 (417)
Q Consensus 143 ~L~Ls~N-~i~~--l~-~l~~l~-~L~~L~Ls~N--~i~~l~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~ 214 (417)
+|++++| .++. ++ .+..++ +|++|++++| .+++-.-...+..+++|+.|++++|. +++... ..+..+++
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~---~~l~~l~~ 248 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF---QEFFQLNY 248 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG---GGGGGCTT
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH---HHHhCCCC
Confidence 6666666 5553 22 244555 6666666666 33321111234456666666666665 332211 13345566
Q ss_pred cccccCcccC
Q psy13376 215 LQCYNNHIIL 224 (417)
Q Consensus 215 L~~Ld~~~~~ 224 (417)
|+.|+++.+.
T Consensus 249 L~~L~l~~~~ 258 (336)
T 2ast_B 249 LQHLSLSRCY 258 (336)
T ss_dssp CCEEECTTCT
T ss_pred CCEeeCCCCC
Confidence 6666665553
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.34 E-value=4.2e-12 Score=111.23 Aligned_cols=101 Identities=26% Similarity=0.342 Sum_probs=90.5
Q ss_pred ccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC--CccccccceeEeecC
Q psy13376 75 IKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN 149 (417)
Q Consensus 75 L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N 149 (417)
.+.+++++|.++.+|. + .++|++|+|++|.|+.++. |..+++|++|+|++|+|+.++. |..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 5789999999999986 4 3889999999999999853 8999999999999999999986 789999999999999
Q ss_pred CCCCcC--CCCCCCCCcEEeccCCccCcch
Q psy13376 150 RIETIE--GLDHLEKLELFNIAANRIQSLA 177 (417)
Q Consensus 150 ~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~ 177 (417)
+|+.++ .+..+++|++|++++|.++...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999996 3889999999999999987543
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.25 E-value=6.6e-12 Score=121.58 Aligned_cols=98 Identities=12% Similarity=0.097 Sum_probs=83.6
Q ss_pred CccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcC--CCCCCCCCc-EEeccCCccCcchhhhhhhCCCCcCE
Q psy13376 116 LVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLE-LFNIAANRIQSLASLVYLRRFKHLGR 190 (417)
Q Consensus 116 l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~-~L~Ls~N~i~~l~~~~~l~~l~~L~~ 190 (417)
+++|+.+++++|+++.++. |.++++|+.+++.+| ++.++ .|.++++|+ .+++.+ .++.++. ..|..+++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~-~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF-GAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT-TTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch-hhhhCCccCCE
Confidence 6789999999999999985 899999999999987 88886 589999999 999988 7888876 57889999999
Q ss_pred EeccCCCCCCCCCccHHHHhcCCCccccc
Q psy13376 191 LNIERNPVCDKENVDGFAIAMVPQLQCYN 219 (417)
Q Consensus 191 L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld 219 (417)
+++++|.+..++. ..+..+++|+.+.
T Consensus 302 l~l~~n~i~~I~~---~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITTLGD---ELFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCEECT---TTTCTTCCCCEEE
T ss_pred EEeCCCccCccch---hhhcCCcchhhhc
Confidence 9999999988876 4677788888764
No 136
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=2.8e-11 Score=117.71 Aligned_cols=105 Identities=23% Similarity=0.298 Sum_probs=79.3
Q ss_pred EEEeecC-CCCCCCCcCCCcccceEeeeC-CCCCCcCC--CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCC
Q psy13376 77 AVNLRIK-TLRKIENLWMMENLVELDLSM-NHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNR 150 (417)
Q Consensus 77 ~L~Ls~N-~i~~i~~l~~l~~L~~L~Ls~-N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~ 150 (417)
.++++++ +++.+|.+..+++|+.|+|++ |.|+.++. |.++++|+.|+|++|+|+.++. |..+++|++|+|++|+
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 4577776 788887777778888888885 88887763 8888888888888888887764 7788888888888888
Q ss_pred CCCcC--CCCCCCCCcEEeccCCccCcchhhhhh
Q psy13376 151 IETIE--GLDHLEKLELFNIAANRIQSLASLVYL 182 (417)
Q Consensus 151 i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l 182 (417)
|+.++ .+..++ |+.|++++|.+.....+..+
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~ 124 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLHCSCALRWL 124 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHH
T ss_pred cceeCHHHcccCC-ceEEEeeCCCccCCCccHHH
Confidence 88876 244444 88888888888754443333
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.18 E-value=2.4e-11 Score=117.57 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=60.9
Q ss_pred ccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcC-EEeccCCCCCCCCCccHHHHhcCCC
Q psy13376 138 LVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLG-RLNIERNPVCDKENVDGFAIAMVPQ 214 (417)
Q Consensus 138 l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~-~L~L~~N~l~~~~~~~~~~~~~l~~ 214 (417)
+++|+.+++++|.++.++ .|.++++|+.+++.+| ++.++. ..|..+++|+ .+++.+ .++.++. ..+..|++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~-~aF~~~~~L~~~l~l~~-~l~~I~~---~aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ-RVFSNCGRLAGTLELPA-SVTAIEF---GAFMGCDN 298 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCEEEEECT-TCCEECT---TTTTTCTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehH-HHhhCChhccEEEEEcc-cceEEch---hhhhCCcc
Confidence 567888888888888886 4888888888888887 777776 5678888888 888877 6776665 46677888
Q ss_pred cccccCcc
Q psy13376 215 LQCYNNHI 222 (417)
Q Consensus 215 L~~Ld~~~ 222 (417)
|+.+++..
T Consensus 299 L~~l~l~~ 306 (329)
T 3sb4_A 299 LRYVLATG 306 (329)
T ss_dssp EEEEEECS
T ss_pred CCEEEeCC
Confidence 88887643
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.13 E-value=9.6e-11 Score=113.93 Aligned_cols=104 Identities=16% Similarity=0.240 Sum_probs=92.4
Q ss_pred ceEeeeCC-CCCCcCCCCCCccCceeeeeC-CCCCcccC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCC
Q psy13376 98 VELDLSMN-HIGVIENLDQLVCLEKLDLGY-NRIEQIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAAN 171 (417)
Q Consensus 98 ~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~-N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N 171 (417)
..++++++ .++.+|.+..+++|++|+|++ |.|+.++. |..+++|++|+|++|+|+.++ .|..+++|++|+|++|
T Consensus 11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 45788988 999998888999999999996 99999985 999999999999999999986 4799999999999999
Q ss_pred ccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376 172 RIQSLASLVYLRRFKHLGRLNIERNPVCDKEN 203 (417)
Q Consensus 172 ~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~ 203 (417)
+|+.++. ..+..++ |+.|+|.+|++...+.
T Consensus 91 ~l~~~~~-~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 91 ALESLSW-KTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp CCSCCCS-TTTCSCC-CCEEECCSSCCCCCGG
T ss_pred ccceeCH-HHcccCC-ceEEEeeCCCccCCCc
Confidence 9999886 4555555 9999999999988765
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.08 E-value=3.3e-12 Score=126.13 Aligned_cols=153 Identities=18% Similarity=0.171 Sum_probs=71.7
Q ss_pred cccccEEEeecCCCCCCCC------cC-CCcccceEeeeCCCCCCcC--C-CCCCccCceeeeeCCCCCcccC--C----
Q psy13376 72 YKLIKAVNLRIKTLRKIEN------LW-MMENLVELDLSMNHIGVIE--N-LDQLVCLEKLDLGYNRIEQIQG--L---- 135 (417)
Q Consensus 72 l~~L~~L~Ls~N~i~~i~~------l~-~l~~L~~L~Ls~N~l~~l~--~-l~~l~~L~~L~Ls~N~l~~l~~--~---- 135 (417)
++.++.|++++|.|+.... +. ..++|++|+|++|.++... . ...+++|+.|+|++|.++.... +
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4555566666655554321 11 2245556666666554321 1 2234455566666665543321 1
Q ss_pred -ccccccceeEeecCCCCCcC------CCCCCCCCcEEeccCCccCcchh---hhhhhCCCCcCEEeccCCCCCCCCCcc
Q psy13376 136 -DTLVNLKVLNLKMNRIETIE------GLDHLEKLELFNIAANRIQSLAS---LVYLRRFKHLGRLNIERNPVCDKENVD 205 (417)
Q Consensus 136 -~~l~~L~~L~Ls~N~i~~l~------~l~~l~~L~~L~Ls~N~i~~l~~---~~~l~~l~~L~~L~L~~N~l~~~~~~~ 205 (417)
...++|++|+|++|.|+... .+..+++|++|+|++|.|++... ...+...++|+.|+|++|.|++.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 22345566666666554321 13445556666666665554221 112344455666666666555432100
Q ss_pred -HHHHhcCCCcccccCcccC
Q psy13376 206 -GFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 206 -~~~~~~l~~L~~Ld~~~~~ 224 (417)
...+...++|+.||++.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHhCCCCCEEeccCCC
Confidence 1123344555555555544
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.01 E-value=3.5e-11 Score=118.78 Aligned_cols=147 Identities=20% Similarity=0.172 Sum_probs=113.6
Q ss_pred cccccccCCcchhhhh---------cccccEEEeecCCCCCCC--C-cCCCcccceEeeeCCCCCCcC--CC-----CCC
Q psy13376 56 LSLLQESTNLAEKLQI---------YKLIKAVNLRIKTLRKIE--N-LWMMENLVELDLSMNHIGVIE--NL-----DQL 116 (417)
Q Consensus 56 ~~l~~~~n~i~~l~~l---------l~~L~~L~Ls~N~i~~i~--~-l~~l~~L~~L~Ls~N~l~~l~--~l-----~~l 116 (417)
..+.++.|.+...... .++|+.|+|++|.++... . ...+++|+.|+|++|.++... .+ ...
T Consensus 75 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~ 154 (372)
T 3un9_A 75 RQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQ 154 (372)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTT
T ss_pred CEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcC
Confidence 3567888888764432 268999999999987632 2 335678999999999998643 12 356
Q ss_pred ccCceeeeeCCCCCccc-----C-CccccccceeEeecCCCCCcC------CCCCCCCCcEEeccCCccCcchhh---hh
Q psy13376 117 VCLEKLDLGYNRIEQIQ-----G-LDTLVNLKVLNLKMNRIETIE------GLDHLEKLELFNIAANRIQSLASL---VY 181 (417)
Q Consensus 117 ~~L~~L~Ls~N~l~~l~-----~-~~~l~~L~~L~Ls~N~i~~l~------~l~~l~~L~~L~Ls~N~i~~l~~~---~~ 181 (417)
++|++|+|++|.|+... . +..+++|++|+|++|.|+... .+...++|++|++++|.|++.... ..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 88999999999997533 1 467889999999999998642 467788999999999999875431 23
Q ss_pred hhCCCCcCEEeccCCCCCCCC
Q psy13376 182 LRRFKHLGRLNIERNPVCDKE 202 (417)
Q Consensus 182 l~~l~~L~~L~L~~N~l~~~~ 202 (417)
+...++|++|+|++|+|++..
T Consensus 235 L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp HHHCSSCCEEECTTSSCCHHH
T ss_pred HHhCCCCCEEeccCCCCCHHH
Confidence 556799999999999998754
No 141
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.91 E-value=1.7e-10 Score=108.33 Aligned_cols=112 Identities=21% Similarity=0.308 Sum_probs=88.3
Q ss_pred CCCCccCce--eeeeCCCCCcccC-----CccccccceeEeecCCCCCcCCC----CCCCCCcEEeccCCccCcchhhhh
Q psy13376 113 LDQLVCLEK--LDLGYNRIEQIQG-----LDTLVNLKVLNLKMNRIETIEGL----DHLEKLELFNIAANRIQSLASLVY 181 (417)
Q Consensus 113 l~~l~~L~~--L~Ls~N~l~~l~~-----~~~l~~L~~L~Ls~N~i~~l~~l----~~l~~L~~L~Ls~N~i~~l~~~~~ 181 (417)
+...+.|.. ++++.|....++. ...+++|+.|+|++|+|+.++++ ..+++|+.|+|++|.|+++..+..
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~ 216 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK 216 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh
Confidence 555555665 6777776655543 24678999999999999887644 478999999999999999877666
Q ss_pred hhCCCCcCEEeccCCCCCC-C---CCccHHHHhcCCCcccccCcccCH
Q psy13376 182 LRRFKHLGRLNIERNPVCD-K---ENVDGFAIAMVPQLQCYNNHIILE 225 (417)
Q Consensus 182 l~~l~~L~~L~L~~N~l~~-~---~~~~~~~~~~l~~L~~Ld~~~~~~ 225 (417)
+..+ +|+.|+|++|+++. . +.|+..++..+|+|+.||...++.
T Consensus 217 l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v~p 263 (267)
T 3rw6_A 217 IKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPP 263 (267)
T ss_dssp GTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBCCC
T ss_pred cccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcCCCC
Confidence 6666 99999999999986 2 357777899999999999988763
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.84 E-value=3.3e-10 Score=117.77 Aligned_cols=17 Identities=12% Similarity=0.264 Sum_probs=11.7
Q ss_pred ccccceeeccccccCCC
Q psy13376 6 TVDRIKKIGLIKDRAGD 22 (417)
Q Consensus 6 ~~~~l~~l~l~~n~l~d 22 (417)
.+++++.++++.+.+++
T Consensus 110 ~~~~L~~L~L~~~~i~~ 126 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSD 126 (592)
T ss_dssp HCTTCCEEEEESCBCCH
T ss_pred hCCCCCeEEeeccEecH
Confidence 35667777887776664
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.80 E-value=4.7e-09 Score=109.01 Aligned_cols=81 Identities=25% Similarity=0.233 Sum_probs=39.7
Q ss_pred CCCCccCceeeeeCCCCCcccC-CccccccceeEeecCCCCCcC---CCCCCCCCcEEeccCCccCcchhhhhhhCCCCc
Q psy13376 113 LDQLVCLEKLDLGYNRIEQIQG-LDTLVNLKVLNLKMNRIETIE---GLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188 (417)
Q Consensus 113 l~~l~~L~~L~Ls~N~l~~l~~-~~~l~~L~~L~Ls~N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L 188 (417)
+..+++|+.|+++++....++. +..+++|++|++++|.++... .+..+++|++|+++ +.+.+.........+++|
T Consensus 266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTC
T ss_pred hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCC
Confidence 3444455555555544444443 445566666666666644321 13455566666665 333332111222445566
Q ss_pred CEEecc
Q psy13376 189 GRLNIE 194 (417)
Q Consensus 189 ~~L~L~ 194 (417)
++|+++
T Consensus 345 ~~L~L~ 350 (592)
T 3ogk_B 345 KRLRIE 350 (592)
T ss_dssp CEEEEE
T ss_pred CEEEee
Confidence 666665
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.67 E-value=1.9e-09 Score=111.92 Aligned_cols=106 Identities=10% Similarity=0.034 Sum_probs=54.2
Q ss_pred CccCceeeeeCCCCCccc--CC-ccccccceeEee--c----CCCCCcCC-------CCCCCCCcEEeccCCccCcchhh
Q psy13376 116 LVCLEKLDLGYNRIEQIQ--GL-DTLVNLKVLNLK--M----NRIETIEG-------LDHLEKLELFNIAANRIQSLASL 179 (417)
Q Consensus 116 l~~L~~L~Ls~N~l~~l~--~~-~~l~~L~~L~Ls--~----N~i~~l~~-------l~~l~~L~~L~Ls~N~i~~l~~~ 179 (417)
+++|+.|.++.|.++... .+ ..+++|+.|+++ + |.++..+. +..+++|++|++++ .+++...
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~- 448 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF- 448 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH-
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH-
Confidence 555666655555555322 12 245667777776 3 44543321 34455666666655 4444221
Q ss_pred hhhhC-CCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccCH
Q psy13376 180 VYLRR-FKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILE 225 (417)
Q Consensus 180 ~~l~~-l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~~ 225 (417)
..+.. +++|+.|++++|.+++... ......+++|+.|+++.|..
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~--~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGM--HHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHH--HHHHHHCTTCCEEEEESCSC
T ss_pred HHHHHhchhccEeeccCCCCcHHHH--HHHHhcCCCcCEEECcCCCC
Confidence 22222 5666666666666543221 11224566666666666654
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.64 E-value=6.5e-08 Score=96.23 Aligned_cols=57 Identities=21% Similarity=0.210 Sum_probs=27.5
Q ss_pred CccccccceeEeecCCCC-----CcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEec
Q psy13376 135 LDTLVNLKVLNLKMNRIE-----TIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNI 193 (417)
Q Consensus 135 ~~~l~~L~~L~Ls~N~i~-----~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L 193 (417)
|.++++|+.+.+.+|.+. .++ .|.+|++|+.+.+. +.++.++. ..|..+++|+.+.+
T Consensus 267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~-~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 267 FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQ-GLLGGNRKVTQLTI 330 (401)
T ss_dssp TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECT-TTTTTCCSCCEEEE
T ss_pred hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhh-hhhcCCCCccEEEE
Confidence 555555555555554443 232 34555555555554 23444443 34445555555555
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.63 E-value=1.7e-09 Score=112.40 Aligned_cols=151 Identities=13% Similarity=0.070 Sum_probs=107.5
Q ss_pred cccccEEEeec---------CCCCCCC--Cc-CCCcccceEeeeCCCCCCcC--CC-CCCccCceeeee--C----CCCC
Q psy13376 72 YKLIKAVNLRI---------KTLRKIE--NL-WMMENLVELDLSMNHIGVIE--NL-DQLVCLEKLDLG--Y----NRIE 130 (417)
Q Consensus 72 l~~L~~L~Ls~---------N~i~~i~--~l-~~l~~L~~L~Ls~N~l~~l~--~l-~~l~~L~~L~Ls--~----N~l~ 130 (417)
+++|+.|++++ +.++... .+ ..+++|+.|.++.|.++... .+ ..+++|+.|+++ + |.++
T Consensus 337 ~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 337 CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp CTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred CCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence 78899999954 3343221 12 34889999999999988542 23 358899999999 4 6677
Q ss_pred cccC-------CccccccceeEeecCCCCCc--CCCC-CCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCC
Q psy13376 131 QIQG-------LDTLVNLKVLNLKMNRIETI--EGLD-HLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCD 200 (417)
Q Consensus 131 ~l~~-------~~~l~~L~~L~Ls~N~i~~l--~~l~-~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~ 200 (417)
..+. +..+++|+.|++++ .++.. +.+. .+++|++|++++|.+++.........+++|+.|++++|++++
T Consensus 417 ~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 417 LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 5432 56778999999977 55543 2233 378999999999999774432233679999999999999844
Q ss_pred CCCccHHHHhcCCCcccccCcccCH
Q psy13376 201 KENVDGFAIAMVPQLQCYNNHIILE 225 (417)
Q Consensus 201 ~~~~~~~~~~~l~~L~~Ld~~~~~~ 225 (417)
... ......+++|+.|+++.|..
T Consensus 496 ~~~--~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 496 KAL--LANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHH--HHTGGGGGGSSEEEEESSCC
T ss_pred HHH--HHHHHhCCCCCEEeeeCCCC
Confidence 321 12335689999999998875
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.60 E-value=8.6e-08 Score=95.35 Aligned_cols=139 Identities=12% Similarity=0.139 Sum_probs=91.8
Q ss_pred cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC--CccccccceeE
Q psy13376 72 YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLN 145 (417)
Q Consensus 72 l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~ 145 (417)
+++|+.+++++|.++.++. |. ..+|+.+.+..+ ++.++. |.++++|+.+++..| ++.++. |.+ .+|+.+.
T Consensus 179 c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 179 CYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVK 254 (401)
T ss_dssp CTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred cccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEE
Confidence 5666777777777766654 43 466777777633 665542 667777777777653 566653 555 5677777
Q ss_pred eecCCCCCcC--CCCCCCCCcEEeccCCccC-----cchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccc
Q psy13376 146 LKMNRIETIE--GLDHLEKLELFNIAANRIQ-----SLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCY 218 (417)
Q Consensus 146 Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~-----~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L 218 (417)
+ .+.++.++ .|.++++|+.+++.+|.+. .++. ..|..+++|+.+.+. +.+..++. ..+..|++|+.+
T Consensus 255 l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~-~aF~~c~~L~~l~l~-~~i~~I~~---~aF~~c~~L~~l 328 (401)
T 4fdw_A 255 L-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP-YCLEGCPKLARFEIP-ESIRILGQ---GLLGGNRKVTQL 328 (401)
T ss_dssp E-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT-TTTTTCTTCCEECCC-TTCCEECT---TTTTTCCSCCEE
T ss_pred e-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECH-HHhhCCccCCeEEeC-CceEEEhh---hhhcCCCCccEE
Confidence 7 44566664 5778888888888877665 4544 467788888888887 44666655 356677777777
Q ss_pred cC
Q psy13376 219 NN 220 (417)
Q Consensus 219 d~ 220 (417)
++
T Consensus 329 ~l 330 (401)
T 4fdw_A 329 TI 330 (401)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.41 E-value=3.9e-08 Score=92.14 Aligned_cols=102 Identities=27% Similarity=0.398 Sum_probs=77.4
Q ss_pred cCCCcccce--EeeeCCCCCCcCC-----CCCCccCceeeeeCCCCCcccC----CccccccceeEeecCCCCCcCCCCC
Q psy13376 91 LWMMENLVE--LDLSMNHIGVIEN-----LDQLVCLEKLDLGYNRIEQIQG----LDTLVNLKVLNLKMNRIETIEGLDH 159 (417)
Q Consensus 91 l~~l~~L~~--L~Ls~N~l~~l~~-----l~~l~~L~~L~Ls~N~l~~l~~----~~~l~~L~~L~Ls~N~i~~l~~l~~ 159 (417)
+...+.|.. ++++.|....++. ..++++|+.|+|++|+|+.+++ +..+++|+.|+|++|+|+.+..+..
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~ 216 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK 216 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh
Confidence 555566666 7778886555442 2468899999999999998775 4478999999999999998865555
Q ss_pred CC--CCcEEeccCCccCc-chh-----hhhhhCCCCcCEEe
Q psy13376 160 LE--KLELFNIAANRIQS-LAS-----LVYLRRFKHLGRLN 192 (417)
Q Consensus 160 l~--~L~~L~Ls~N~i~~-l~~-----~~~l~~l~~L~~L~ 192 (417)
+. +|+.|++++|.+.. ++. ...+..+|+|+.||
T Consensus 217 l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 217 IKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 54 99999999999975 221 12467899999887
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.40 E-value=7.8e-08 Score=85.10 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=28.5
Q ss_pred CCCCcEEeccCCccCcchh---hhhhhCCCCcCEEec--cCCCCCCCCCc-cHHHHhcCCCcccccCcccC
Q psy13376 160 LEKLELFNIAANRIQSLAS---LVYLRRFKHLGRLNI--ERNPVCDKENV-DGFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 160 l~~L~~L~Ls~N~i~~l~~---~~~l~~l~~L~~L~L--~~N~l~~~~~~-~~~~~~~l~~L~~Ld~~~~~ 224 (417)
.++|++|+|++|.|++-.. ...+...++|++|+| ++|.|.+.... -...+...++|+.|+++.+.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 3445555555555544211 112334445555555 45555442210 01133344556666655554
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.37 E-value=2.9e-07 Score=90.26 Aligned_cols=152 Identities=14% Similarity=0.121 Sum_probs=89.1
Q ss_pred cccccEEEeecCCCCC----------CCC-cCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCccc--CC--c
Q psy13376 72 YKLIKAVNLRIKTLRK----------IEN-LWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQ--GL--D 136 (417)
Q Consensus 72 l~~L~~L~Ls~N~i~~----------i~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~--~~--~ 136 (417)
+++|+.|.+..+.... +.. +..+|+|+.|++++|.-..++.+ .+++|+.|++..|.+..-. .+ .
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~ 216 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGS 216 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHc
Confidence 6788888876543321 112 45667888888887732233444 3778888888887775322 22 3
Q ss_pred cccccceeEeec--CC------CCCcC---CCCCCCCCcEEeccCCccCcchh--hhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376 137 TLVNLKVLNLKM--NR------IETIE---GLDHLEKLELFNIAANRIQSLAS--LVYLRRFKHLGRLNIERNPVCDKEN 203 (417)
Q Consensus 137 ~l~~L~~L~Ls~--N~------i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~--~~~l~~l~~L~~L~L~~N~l~~~~~ 203 (417)
.+|+|++|+|+. |. +..+. ....+++|++|++++|.+.+... +.....+++|++|+|+.|.+.+...
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~ 296 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence 677888888753 11 11111 11347788888888888765222 1111246788888888887765321
Q ss_pred cc-HHHHhcCCCcccccCcccC
Q psy13376 204 VD-GFAIAMVPQLQCYNNHIIL 224 (417)
Q Consensus 204 ~~-~~~~~~l~~L~~Ld~~~~~ 224 (417)
-. ...+..+++|+.|+++.+.
T Consensus 297 ~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 297 RLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHhhcccCCcceEEECCCCc
Confidence 00 0012456788888876654
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.28 E-value=8.9e-07 Score=86.74 Aligned_cols=129 Identities=23% Similarity=0.268 Sum_probs=93.5
Q ss_pred cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCc--CCC--CCCccCceeeeeC--CC------CCcccC-C--c
Q psy13376 72 YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVI--ENL--DQLVCLEKLDLGY--NR------IEQIQG-L--D 136 (417)
Q Consensus 72 l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l--~~l--~~l~~L~~L~Ls~--N~------l~~l~~-~--~ 136 (417)
+++|+.|++++|.-..++.+. +++|+.|++..+.++.- ..+ ..+++|+.|+|+. |. +..+.. + .
T Consensus 171 ~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~ 249 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD 249 (362)
T ss_dssp CTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTT
T ss_pred CCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcC
Confidence 789999999988422344443 88999999999987632 223 3789999999963 21 222222 2 3
Q ss_pred cccccceeEeecCCCCCc-----CCCCCCCCCcEEeccCCccCcchh--h-hhhhCCCCcCEEeccCCCCCCC
Q psy13376 137 TLVNLKVLNLKMNRIETI-----EGLDHLEKLELFNIAANRIQSLAS--L-VYLRRFKHLGRLNIERNPVCDK 201 (417)
Q Consensus 137 ~l~~L~~L~Ls~N~i~~l-----~~l~~l~~L~~L~Ls~N~i~~l~~--~-~~l~~l~~L~~L~L~~N~l~~~ 201 (417)
.+|+|++|+|++|.+..- .....+++|++|+|+.|.+++... + ..+..+++|+.|++++|.+++.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 578999999999998742 122468999999999999987432 1 1235679999999999988754
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.23 E-value=7.9e-07 Score=78.53 Aligned_cols=110 Identities=19% Similarity=0.105 Sum_probs=87.8
Q ss_pred cCCCcccceEeeeCC-CCCCcC------CCCCCccCceeeeeCCCCCccc------CCccccccceeEeecCCCCCc---
Q psy13376 91 LWMMENLVELDLSMN-HIGVIE------NLDQLVCLEKLDLGYNRIEQIQ------GLDTLVNLKVLNLKMNRIETI--- 154 (417)
Q Consensus 91 l~~l~~L~~L~Ls~N-~l~~l~------~l~~l~~L~~L~Ls~N~l~~l~------~~~~l~~L~~L~Ls~N~i~~l--- 154 (417)
+...++|++|+|++| .++.-. .+...++|++|+|++|.|.+-. .+...+.|++|+|++|.|+.-
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 567889999999999 998532 3677889999999999997532 155668899999999999863
Q ss_pred ---CCCCCCCCCcEEec--cCCccCcchh---hhhhhCCCCcCEEeccCCCCCC
Q psy13376 155 ---EGLDHLEKLELFNI--AANRIQSLAS---LVYLRRFKHLGRLNIERNPVCD 200 (417)
Q Consensus 155 ---~~l~~l~~L~~L~L--s~N~i~~l~~---~~~l~~l~~L~~L~L~~N~l~~ 200 (417)
..+...++|++|++ ++|.|++-.. ...+...++|++|++++|.+..
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 25778889999999 8899987432 1245677899999999998753
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.11 E-value=1.3e-06 Score=76.34 Aligned_cols=98 Identities=20% Similarity=0.266 Sum_probs=52.6
Q ss_pred cCceeeeeCCCCCcc--cCCccccccceeEeecCC-CCCc--CCCCC----CCCCcEEeccCCc-cCcchhhhhhhCCCC
Q psy13376 118 CLEKLDLGYNRIEQI--QGLDTLVNLKVLNLKMNR-IETI--EGLDH----LEKLELFNIAANR-IQSLASLVYLRRFKH 187 (417)
Q Consensus 118 ~L~~L~Ls~N~l~~l--~~~~~l~~L~~L~Ls~N~-i~~l--~~l~~----l~~L~~L~Ls~N~-i~~l~~~~~l~~l~~ 187 (417)
.|+.||++++.|++. ..+..+++|++|+|++|. |++- ..+.. .++|++|++++|. |++- .+..+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-GIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-HHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-HHHHHhcCCC
Confidence 456666666655432 235556666666666653 4432 12332 2357777777763 6653 3455667777
Q ss_pred cCEEeccCCC-CCCCCCccHHHHhcCCCcc
Q psy13376 188 LGRLNIERNP-VCDKENVDGFAIAMVPQLQ 216 (417)
Q Consensus 188 L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~ 216 (417)
|++|++++++ +++........-..+|+++
T Consensus 141 L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp CCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 7777777775 3332211122334566654
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.63 E-value=4e-05 Score=66.89 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=66.3
Q ss_pred cccceeEeecCCCCCc--CCCCCCCCCcEEeccCCc-cCcchhhhhhhCC----CCcCEEeccCCC-CCCCCCccHHHHh
Q psy13376 139 VNLKVLNLKMNRIETI--EGLDHLEKLELFNIAANR-IQSLASLVYLRRF----KHLGRLNIERNP-VCDKENVDGFAIA 210 (417)
Q Consensus 139 ~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~Ls~N~-i~~l~~~~~l~~l----~~L~~L~L~~N~-l~~~~~~~~~~~~ 210 (417)
..|++|+++++.|+.. ..+..+++|++|+|++|. |++ ..+..+..+ ++|++|++++|+ |++.. ...+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD-~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G---l~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED-GCLERLSQLENLQKSMLEMEIISCGNVTDKG---IIALH 136 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH-HHHHHHHTCHHHHHHCCEEEEESCTTCCHHH---HHHGG
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH-HHHHHHHhcccccCCCCEEEcCCCCcCCHHH---HHHHh
Confidence 4799999999998865 467899999999999995 777 344666664 479999999986 66533 23567
Q ss_pred cCCCcccccCcccCH
Q psy13376 211 MVPQLQCYNNHIILE 225 (417)
Q Consensus 211 ~l~~L~~Ld~~~~~~ 225 (417)
.+++|+.|+++.|+.
T Consensus 137 ~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPG 151 (176)
T ss_dssp GCTTCCEEEEESCTT
T ss_pred cCCCCCEEECCCCCC
Confidence 899999999999874
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.60 E-value=0.00019 Score=70.04 Aligned_cols=106 Identities=17% Similarity=0.248 Sum_probs=60.1
Q ss_pred cCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcC--CCCCCCCCc
Q psy13376 91 LWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLE 164 (417)
Q Consensus 91 l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~ 164 (417)
+..+..|+.+.+..+ ++.++ .|.++.+|+.+.+.. .++.++. |..+++|+.+.+.++.++.++ .|.++.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 455556666666544 44443 255666666666643 3555543 666666666666666666654 466666666
Q ss_pred EEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCC
Q psy13376 165 LFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDK 201 (417)
Q Consensus 165 ~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~ 201 (417)
.+.+..+ ++.++. ..|.++.+|+.+.+..+ ++.+
T Consensus 314 ~i~lp~~-l~~I~~-~aF~~C~~L~~i~ip~~-v~~I 347 (379)
T 4h09_A 314 SVTLPTA-LKTIQV-YAFKNCKALSTISYPKS-ITLI 347 (379)
T ss_dssp EEECCTT-CCEECT-TTTTTCTTCCCCCCCTT-CCEE
T ss_pred EEEcCcc-ccEEHH-HHhhCCCCCCEEEECCc-cCEE
Confidence 6666543 555544 35566666666666433 4443
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.37 E-value=0.00091 Score=65.12 Aligned_cols=123 Identities=14% Similarity=0.206 Sum_probs=96.0
Q ss_pred cCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcC--CCCCCCCCc
Q psy13376 91 LWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLE 164 (417)
Q Consensus 91 l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~ 164 (417)
+....+|+.+.+..+ ++.++ .+.++..|+.+.+..+ ++.++. |..+.+|+.+.+.. .++.++ .|.++++|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccc
Confidence 455667777777544 44444 3788899999999876 777764 88899999999965 466665 589999999
Q ss_pred EEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCc
Q psy13376 165 LFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNH 221 (417)
Q Consensus 165 ~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~ 221 (417)
.+.+.++.++.++. ..|.++.+|+.+.+..+ ++.+.. ..+..|.+|+.+.+.
T Consensus 290 ~i~l~~~~i~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~---~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 290 KVVMDNSAIETLEP-RVFMDCVKLSSVTLPTA-LKTIQV---YAFKNCKALSTISYP 341 (379)
T ss_dssp EEEECCTTCCEECT-TTTTTCTTCCEEECCTT-CCEECT---TTTTTCTTCCCCCCC
T ss_pred cccccccccceehh-hhhcCCCCCCEEEcCcc-ccEEHH---HHhhCCCCCCEEEEC
Confidence 99999999998877 57899999999999654 776665 467788899888763
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.25 E-value=0.00079 Score=66.09 Aligned_cols=101 Identities=15% Similarity=0.164 Sum_probs=48.2
Q ss_pred CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCc
Q psy13376 113 LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188 (417)
Q Consensus 113 l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L 188 (417)
|.++..|+.+.+..+. ..+.. |..++.|+.+.+. +.++.++ .|.++.+|+.+.+..+ ++.+.. ..|.++.+|
T Consensus 261 F~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILD-DAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTC
T ss_pred eeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehH-hHhhCCCCC
Confidence 4555555555554332 22332 5555555555553 3344443 3555555555555433 444443 344555555
Q ss_pred CEEeccCCCCCCCCCccHHHHhcCCCcccccCc
Q psy13376 189 GRLNIERNPVCDKENVDGFAIAMVPQLQCYNNH 221 (417)
Q Consensus 189 ~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~ 221 (417)
+.+.+..+ ++.+.. ..+..|++|+.+++.
T Consensus 337 ~~i~ip~s-v~~I~~---~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPE---SAFSNCTALNNIEYS 365 (394)
T ss_dssp CEEEECTT-CCBCCG---GGGTTCTTCCEEEES
T ss_pred CEEEECcc-cCEEhH---hHhhCCCCCCEEEEC
Confidence 55555322 444443 344555555555443
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.17 E-value=0.0011 Score=64.94 Aligned_cols=122 Identities=12% Similarity=0.122 Sum_probs=73.8
Q ss_pred cCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCcC--CCCCCCCCcEE
Q psy13376 91 LWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIE--GLDHLEKLELF 166 (417)
Q Consensus 91 l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L 166 (417)
+..+..++.+.+..+... ++ .|..+..++.+....+.+.. ..|..+.+|+.+.+..+ ++.++ .|.++++|+.+
T Consensus 249 f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i 325 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI 325 (394)
T ss_dssp TTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT-TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccccceeEEcCCCcce-eeccccccccccceeccCceeecc-ccccccccccccccccc-cceechhhhcCCCCCCEE
Confidence 445555555555544322 21 24455555555544332211 02666777777777654 66664 57778888888
Q ss_pred eccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCc
Q psy13376 167 NIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNH 221 (417)
Q Consensus 167 ~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~ 221 (417)
++..+ ++.++. ..|.++.+|+.+.+..+ ++.++. .++..|++|+.+++.
T Consensus 326 ~lp~~-v~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~---~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 326 DLPYL-VEEIGK-RSFRGCTSLSNINFPLS-LRKIGA---NAFQGCINLKKVELP 374 (394)
T ss_dssp CCCTT-CCEECT-TTTTTCTTCCEECCCTT-CCEECT---TTBTTCTTCCEEEEE
T ss_pred EeCCc-ccEEhH-HhccCCCCCCEEEECcc-ccEehH---HHhhCCCCCCEEEEC
Confidence 88644 666665 46777888888888665 666554 456777888877654
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.17 E-value=0.00085 Score=65.86 Aligned_cols=128 Identities=16% Similarity=0.201 Sum_probs=91.4
Q ss_pred CCCCCCC--cCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcC--
Q psy13376 84 TLRKIEN--LWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE-- 155 (417)
Q Consensus 84 ~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~-- 155 (417)
.++.++. |..+..|+.+.+..+.. .++ .|.+++.|+.+.+. +.++.++. |.++.+|+.+.+..+ ++.++
T Consensus 252 ~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~ 328 (394)
T 4gt6_A 252 GVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDD 328 (394)
T ss_dssp TEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred cceEcccceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHh
Confidence 3444433 88889999999876543 444 48899999999996 56888875 999999999999764 77775
Q ss_pred CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcc
Q psy13376 156 GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHI 222 (417)
Q Consensus 156 ~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~ 222 (417)
.|.++.+|+.+.+..+ ++.++. ..|.++++|+.+++.++.... ..+..+.+|+.+.+..
T Consensus 329 aF~~C~~L~~i~ip~s-v~~I~~-~aF~~C~~L~~i~~~~~~~~~------~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSS-VTKIPE-SAFSNCTALNNIEYSGSRSQW------NAISTDSGLQNLPVAP 387 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCBCCG-GGGTTCTTCCEEEESSCHHHH------HTCBCCCCC-------
T ss_pred HhhCCCCCCEEEECcc-cCEEhH-hHhhCCCCCCEEEECCceeeh------hhhhccCCCCEEEeCC
Confidence 6899999999999654 777776 578999999999998874321 1234566677665543
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.06 E-value=0.0016 Score=63.90 Aligned_cols=136 Identities=9% Similarity=0.162 Sum_probs=98.1
Q ss_pred cccccEEEeecCCCCCCC--CcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC--CccccccceeEee
Q psy13376 72 YKLIKAVNLRIKTLRKIE--NLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLK 147 (417)
Q Consensus 72 l~~L~~L~Ls~N~i~~i~--~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls 147 (417)
...++.+.+..+. ..++ .|..++.++.+....+.+.. ..|..+.+|+.+.+..+ ++.++. |.++.+|+.+++.
T Consensus 252 ~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 252 CTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLP 328 (394)
T ss_dssp CSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEECT-TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCC
T ss_pred cccceeEEcCCCc-ceeeccccccccccceeccCceeecc-ccccccccccccccccc-cceechhhhcCCCCCCEEEeC
Confidence 3456666665443 3333 27788888888877654322 14788899999999765 888874 8999999999997
Q ss_pred cCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccc
Q psy13376 148 MNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCY 218 (417)
Q Consensus 148 ~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L 218 (417)
. .++.++ .|.++++|+.+.+..+ ++.++. ..|.++++|+.+++..+ +..+. ..+..+++|+.+
T Consensus 329 ~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~-~aF~~C~~L~~i~lp~~-~~~~~----~~F~~c~~L~~I 393 (394)
T 4fs7_A 329 Y-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGA-NAFQGCINLKKVELPKR-LEQYR----YDFEDTTKFKWI 393 (394)
T ss_dssp T-TCCEECTTTTTTCTTCCEECCCTT-CCEECT-TTBTTCTTCCEEEEEGG-GGGGG----GGBCTTCEEEEE
T ss_pred C-cccEEhHHhccCCCCCCEEEECcc-ccEehH-HHhhCCCCCCEEEECCC-CEEhh----heecCCCCCcEE
Confidence 5 477775 6899999999999877 888776 57899999999999754 33221 245667776653
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.93 E-value=0.00029 Score=62.58 Aligned_cols=111 Identities=10% Similarity=0.037 Sum_probs=55.4
Q ss_pred CccCceeeeeCC-CCCccc------CCccccccceeEeecCCCCCcC------CCCCCCCCcEEeccCCccCcchhh---
Q psy13376 116 LVCLEKLDLGYN-RIEQIQ------GLDTLVNLKVLNLKMNRIETIE------GLDHLEKLELFNIAANRIQSLASL--- 179 (417)
Q Consensus 116 l~~L~~L~Ls~N-~l~~l~------~~~~l~~L~~L~Ls~N~i~~l~------~l~~l~~L~~L~Ls~N~i~~l~~~--- 179 (417)
-+.|++|+|++| .|..-. .+..-..|+.|+|++|.|.+.. .+..-+.|++|+|++|.|++-...
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 344555555543 443211 1334445666666666655331 133445667777777776653221
Q ss_pred hhhhCCCCcCEEeccCCCC---CCCCC-ccHHHHhcCCCcccccCcccCHH
Q psy13376 180 VYLRRFKHLGRLNIERNPV---CDKEN-VDGFAIAMVPQLQCYNNHIILED 226 (417)
Q Consensus 180 ~~l~~l~~L~~L~L~~N~l---~~~~~-~~~~~~~~l~~L~~Ld~~~~~~~ 226 (417)
..+..-+.|+.|+|++|.. ..... .....+..-+.|+.|+++.....
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 1344455677777765432 22110 01124455677777777666543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.92 E-value=0.0017 Score=57.61 Aligned_cols=107 Identities=16% Similarity=0.153 Sum_probs=79.3
Q ss_pred cCCCcccceEeeeCC-CCCCcC------CCCCCccCceeeeeCCCCCccc--C----CccccccceeEeecCCCCCcC--
Q psy13376 91 LWMMENLVELDLSMN-HIGVIE------NLDQLVCLEKLDLGYNRIEQIQ--G----LDTLVNLKVLNLKMNRIETIE-- 155 (417)
Q Consensus 91 l~~l~~L~~L~Ls~N-~l~~l~------~l~~l~~L~~L~Ls~N~l~~l~--~----~~~l~~L~~L~Ls~N~i~~l~-- 155 (417)
+..-+.|++|+|++| .|..-. .+..-+.|+.|+|++|.|.+-. . +..-+.|++|+|++|.|+.-.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345578999999986 887422 3667789999999999997543 1 556678999999999998643
Q ss_pred ----CCCCCCCCcEEeccCC---ccCcchh---hhhhhCCCCcCEEeccCCC
Q psy13376 156 ----GLDHLEKLELFNIAAN---RIQSLAS---LVYLRRFKHLGRLNIERNP 197 (417)
Q Consensus 156 ----~l~~l~~L~~L~Ls~N---~i~~l~~---~~~l~~l~~L~~L~L~~N~ 197 (417)
.+..-+.|+.|+|++| .+.+-.. ...+..-+.|+.|+++.|.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 4677788999999876 4444211 1345677899999997664
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.68 E-value=0.0026 Score=52.45 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=20.2
Q ss_pred CCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCC
Q psy13376 162 KLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDK 201 (417)
Q Consensus 162 ~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~ 201 (417)
+|++|+|++|+|+.++. ..|..+++|+.|+|++||+...
T Consensus 32 ~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp TCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCBCS
T ss_pred CCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCeecc
Confidence 45555555555555544 3445555555555555555443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.52 E-value=0.0029 Score=52.11 Aligned_cols=52 Identities=23% Similarity=0.285 Sum_probs=33.1
Q ss_pred eeeeeCCCCC--cccC-CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccC
Q psy13376 121 KLDLGYNRIE--QIQG-LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQ 174 (417)
Q Consensus 121 ~L~Ls~N~l~--~l~~-~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~ 174 (417)
.++.+++.++ .+|. +. ++|++|+|++|+|+.++ .|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5566666666 6653 22 35667777777777665 3566677777777777664
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=46.28 E-value=31 Score=26.19 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=25.3
Q ss_pred CCCCCcC--CCCCCccCceeeeeCCCCCcccC--CccccccceeEeecC
Q psy13376 105 NHIGVIE--NLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN 149 (417)
Q Consensus 105 N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N 149 (417)
..++.|. .|.++.+|+.+.+..+ ++.|.. |..+.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3445554 2666666666666543 455543 666666666666553
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=46.12 E-value=31 Score=26.22 Aligned_cols=43 Identities=7% Similarity=0.097 Sum_probs=24.3
Q ss_pred CCCcccC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCC
Q psy13376 128 RIEQIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAAN 171 (417)
Q Consensus 128 ~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N 171 (417)
.++.|.. |.++.+|+.+.+-. .++.+. .|.+|.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCC
Confidence 4455543 66666666666654 244553 4666666666666543
Done!