RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13376
(417 letters)
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 42.9 bits (102), Expect = 5e-06
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 119 LEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDH 159
LE LDL N+I + L L NL+ L+L N+I + L +
Sbjct: 3 LETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLSN 43
Score = 38.2 bits (90), Expect = 2e-04
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 96 NLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGL 135
NL LDLS N I + L L LE LDL N+I + L
Sbjct: 2 NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPL 41
Score = 36.7 bits (86), Expect = 7e-04
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 140 NLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASL 179
NL+ L+L N+I + L +L LE +++ N+I L+ L
Sbjct: 2 NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPL 41
Score = 25.5 bits (57), Expect = 7.6
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVIENL 113
+ + L + NL LDLS N I + L
Sbjct: 13 ITDLPPLSNLPNLETLDLSGNKITDLSPL 41
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 41.4 bits (98), Expect = 3e-05
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 119 LEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETI--EGLDHLEKLELFNIAANRI 173
L+ LDL NR+ I L NLKVL+L N + +I E L L +++ N +
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 36.8 bits (86), Expect = 0.001
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQI--QGLDTLVNLKVLNLKMNRI 151
NL LDLS N + VI + L L+ LDL N + I + L +L+ L+L N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 32.9 bits (76), Expect = 0.028
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 94 MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRI 129
+ NL LDLS N++ I L L LDL N +
Sbjct: 23 LPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 31.4 bits (72), Expect = 0.079
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 140 NLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
NLK L+L NR+ I L L++ +++ N + S++ L L++ N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEA-FSGLPSLRSLDLSGNN 59
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 35.3 bits (81), Expect = 0.054
Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 12/184 (6%)
Query: 44 LLSKKGVISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLS 103
+ +S N L LL S + L + I +L ENL + L LDL+
Sbjct: 47 VNRLALNLSSNTLLLLPSSLSRLLSLDLLS-----PSGISSLDGSENLLNLLPLPSLDLN 101
Query: 104 MNHI-GVIENLDQLVCLEKLDLGYNRIEQIQGLDTLV--NLKVLNLKMNRIETI-EGLDH 159
+N + I L +L L LDL N I I L L+ NLK L+L N+IE++ L +
Sbjct: 102 LNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRN 161
Query: 160 LEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYN 219
L L+ +++ N + L L+ +L L++ N + D A+ +L N
Sbjct: 162 LPNLKNLDLSFNDLSDLPKLLSNL--SNLNNLDLSGNKISDLPPEIELLSAL-EELDLSN 218
Query: 220 NHII 223
N II
Sbjct: 219 NSII 222
Score = 28.8 bits (64), Expect = 5.3
Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 6/128 (4%)
Query: 51 ISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIG-V 109
+S N +S L L L+ L N I+ L + NL +NL L+LS N + +
Sbjct: 193 LSGNKISDLPPEIELLSALEELDLSN--NSIIELLSSLSNL---KNLSGLELSNNKLEDL 247
Query: 110 IENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIA 169
E++ L LE LDL N+I I L +L NL+ L+L N + L L L L +
Sbjct: 248 PESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLL 307
Query: 170 ANRIQSLA 177
+ A
Sbjct: 308 NLLLTLKA 315
>gnl|CDD|197684 smart00365, LRR_SD22, Leucine-rich repeat, SDS22-like subfamily.
Length = 22
Score = 28.8 bits (66), Expect = 0.29
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 116 LVCLEKLDLGYNRIEQIQGLDT 137
L LE+LDLG N+I++I+ LD
Sbjct: 1 LTNLEELDLGDNKIKKIENLDE 22
Score = 25.3 bits (57), Expect = 5.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 138 LVNLKVLNLKMNRIETIEGLDH 159
L NL+ L+L N+I+ IE LD
Sbjct: 1 LTNLEELDLGDNKIKKIENLDE 22
>gnl|CDD|178174 PLN02560, PLN02560, enoyl-CoA reductase.
Length = 308
Score = 31.2 bits (71), Expect = 0.87
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 196 NPVCDKENVDGFAIAMVPQLQCYNNHIILEDERR 229
PV + + GF +V QL + HIIL + R+
Sbjct: 187 TPVSETQMKVGFGFGLVCQLANFYCHIILRNLRK 220
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional.
Length = 1153
Score = 31.8 bits (72), Expect = 0.94
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 14/101 (13%)
Query: 53 ENLLSL-LQEST--NLAEKLQIYKLIKAVNLR-IKTLRKIENLWMMENLVELDLS----- 103
ENL+ L +Q S L + + ++ ++LR K L++I +L M NL L LS
Sbjct: 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL 670
Query: 104 MNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
+ I+ L++ LE LD+ +R E ++ L T +NLK L
Sbjct: 671 VELPSSIQYLNK---LEDLDM--SRCENLEILPTGINLKSL 706
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 31.2 bits (71), Expect = 1.0
Identities = 42/171 (24%), Positives = 69/171 (40%), Gaps = 31/171 (18%)
Query: 65 LAEKLQIYKLIKAVNLRIKTLRKIENLW-----MMEN---LVELDLSMNHIG-----VIE 111
LA L+ +K + L + +I + L ELDLS N +G V+E
Sbjct: 43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102
Query: 112 NLDQLVCLEKLDLGYNRIEQIQGLDTLV--------NLKVLNLKMNRIE------TIEGL 157
+L + L++L L N + +GL L L+ L L NR+E + L
Sbjct: 103 SLLRSSSLQELKLNNNGLG-DRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161
Query: 158 DHLEKLELFNIAANRI--QSLASLVY-LRRFKHLGRLNIERNPVCDKENVD 205
L+ N+A N I + +L L+ +L L++ N + D+
Sbjct: 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASA 212
Score = 28.9 bits (65), Expect = 5.8
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 97 LVELDLSMNHIG------VIENLDQLVCLEKLDLGYNRI 129
L+ L LS N I + E L + L +LDL N+
Sbjct: 252 LLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290
>gnl|CDD|185760 cd08977, SusD, starch binding outer membrane protein SusD.
SusD-like proteins from Bacteroidetes, members of the
human distal gut microbiota, are part of the starch
utilization system (Sus). Sus is one of the large
clusters of glycosyl hydrolases, called polysaccharide
utilization loci (PULs), which play an important role in
polysaccharide recognition and uptake, and it is needed
for growth on amylose, amylopectin, pullulan, and
maltooligosaccharides. SusD, together with SusC, a
predicted beta-barrel porin, forms the minimum
outer-membrane starch-binding complex. The adult human
distal gut microbiota is essential for digestion of a
large variety of dietary polysaccharides, for which
humans lack the necessary glycosyl hydrolases.
Length = 359
Score = 30.5 bits (69), Expect = 1.8
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 306 SVAELYNNFKRDFLEVSSKLYEFGTSQHSLRQNE-VDEFQAVYRALKLKSC-HEAVKNKT 363
S E+Y D E + L E ++Q ++ RAL + + A
Sbjct: 136 SQEEVYTQILADLDEAIALLPEASSAQDFYIYFGDGRAWKKAARALLARVYLYLANYTAA 195
Query: 364 RYR 366
Y
Sbjct: 196 DYA 198
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 30.2 bits (68), Expect = 2.2
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 92 WMMENLVELDLSMNHI-GVIENLDQLVCLEKLDLGYNRIEQI--QGLDTLVNLKVLNLKM 148
W M +L L L+ N G + + LE LDL N+ + L +L L L L
Sbjct: 449 WDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508
Query: 149 NRI--ETIEGLDHLEKLELFNIAANRI 173
N++ E + L +KL +++ N++
Sbjct: 509 NKLSGEIPDELSSCKKLVSLDLSHNQL 535
>gnl|CDD|221003 pfam11150, DUF2927, Protein of unknown function (DUF2927). This
family is conserved in Proteobacteria. Several members
are described as being putative lipoproteins, but
otherwise the function is not known.
Length = 212
Score = 27.9 bits (63), Expect = 9.2
Identities = 18/121 (14%), Positives = 37/121 (30%), Gaps = 23/121 (19%)
Query: 182 LRRFKHLGRLNIERNPVCDKE--------------NVDGFAIAMVPQLQCYNNHIIL--E 225
LRR++ R+ +E P D+ V G I++ + N H++
Sbjct: 26 LRRWEGPVRVAVEGVPPADRAADLALLRAYLARLARVTGHDISLTSGGEA-NFHVLFVSR 84
Query: 226 DERRTALEQHMYDVRTETLKDLMVQRERQNALASQRKSEEKSK------AFVENLEGDFL 279
D+ + + + + ++ L S R + + FV
Sbjct: 85 DDMANRIRRLLPGAACAVVPNVSRLPRDAQCLVSFRTNWAREITRARAVIFVRADHPPLE 144
Query: 280 F 280
Sbjct: 145 R 145
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.366
Gapped
Lambda K H
0.267 0.0977 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,834,754
Number of extensions: 2059388
Number of successful extensions: 1790
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1769
Number of HSP's successfully gapped: 45
Length of query: 417
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 318
Effective length of database: 6,546,556
Effective search space: 2081804808
Effective search space used: 2081804808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.5 bits)