RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13376
(417 letters)
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 131 bits (332), Expect = 1e-36
Identities = 43/194 (22%), Positives = 89/194 (45%), Gaps = 14/194 (7%)
Query: 48 KGVISENLLSLLQESTNL-AEKLQIYKLIKAVNLRIKTLRKIE-NLWMMENLVELDLSMN 105
K ++ + + +E ++ A + + +L + I + K++ L ++ L LS N
Sbjct: 3 KATTIKDAIRIFEERKSVVATEAEKVEL----HGMIPPIEKMDATLSTLKACKHLALSTN 58
Query: 106 HIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVN-LKVLNLKMNRIETIEGLDHLEKLE 164
+I I +L + L L LG N I++I+ LD + + L+ L + N+I ++ G++ L L
Sbjct: 59 NIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLR 118
Query: 165 LFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDG-------FAIAMVPQLQC 217
+ ++ N+I + + L L L + NP+ + + + +P L+
Sbjct: 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178
Query: 218 YNNHIILEDERRTA 231
+ + DER A
Sbjct: 179 LDGMPVDVDEREQA 192
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 120 bits (304), Expect = 6e-33
Identities = 49/173 (28%), Positives = 71/173 (41%), Gaps = 3/173 (1%)
Query: 78 VNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLD-QLVCLEKLDLGYNRIEQIQGLD 136
V L + + + ELDL I VIENL L + +D N I ++ G
Sbjct: 2 VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP 61
Query: 137 TLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIE 194
L LK L + NRI I L L + N + L L L K L L I
Sbjct: 62 LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121
Query: 195 RNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYDVRTETLKDL 247
RNPV +K++ + I VPQ++ + + ER+ A + + KD+
Sbjct: 122 RNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDI 174
Score = 32.7 bits (75), Expect = 0.11
Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 4/80 (5%)
Query: 143 VLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKE 202
++ L IE + + ++ +I + +L ++ N + +
Sbjct: 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENL--GATLDQFDAIDFSDNEIRKLD 58
Query: 203 NVDGFAIAMVPQLQCYNNHI 222
+ L NN I
Sbjct: 59 GFPLL--RRLKTLLVNNNRI 76
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 114 bits (286), Expect = 1e-27
Identities = 41/185 (22%), Positives = 78/185 (42%), Gaps = 1/185 (0%)
Query: 33 LQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLW 92
+N ++ LL + LQ + L + L
Sbjct: 379 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM 438
Query: 93 MMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQI-QGLDTLVNLKVLNLKMNRI 151
++ L L+ + V+ +L+QL+ + LDL +NR+ + L L L+VL N +
Sbjct: 439 EYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL 498
Query: 152 ETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAM 211
E ++G+ +L +L+ + NR+Q A++ L L LN++ N +C +E + M
Sbjct: 499 ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558
Query: 212 VPQLQ 216
+P +
Sbjct: 559 LPSVS 563
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 100 bits (252), Expect = 2e-25
Identities = 37/157 (23%), Positives = 68/157 (43%), Gaps = 4/157 (2%)
Query: 81 RIKTLRKIENLWMMENLVELDLSMNHIGVIENL-DQLVCLEKLDLGYNRIEQIQGLDTLV 139
RI + + LV LD ++ G IE L + V LE L L + + L L
Sbjct: 13 RIHLELRNRTPAAVRELV-LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLP 71
Query: 140 NLKVLNLKMNRIETIEGL--DHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
LK L L NRI + + L L N++ N+++ +++L L++ + L L++
Sbjct: 72 KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131
Query: 198 VCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQ 234
V + + ++PQL + + + E + +
Sbjct: 132 VTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDSDAE 168
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 106 bits (265), Expect = 5e-25
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 11/151 (7%)
Query: 75 IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG 134
I + ++ ++ + + N+ +L L+ N + I+ L L L L L N+I+ +
Sbjct: 45 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS 104
Query: 135 LDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIE 194
L L LK L+L+ N I I GL HL +LE + N+I + L L L L++E
Sbjct: 105 LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRL---TKLDTLSLE 161
Query: 195 RNPVCDKENVDGFAIAMVPQLQ---CYNNHI 222
N + D + G +LQ NHI
Sbjct: 162 DNQISDIVPLAGL-----TKLQNLYLSKNHI 187
Score = 103 bits (258), Expect = 4e-24
Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 3/138 (2%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
++ + +L ++ L L L N I I L L LE L LG N+I I L L L L
Sbjct: 99 IKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTL 158
Query: 145 NLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENV 204
+L+ N+I I L L KL+ ++ N I L +L L K+L L + +K
Sbjct: 159 SLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGL---KNLDVLELFSQECLNKPIN 215
Query: 205 DGFAIAMVPQLQCYNNHI 222
+ + ++ + +
Sbjct: 216 HQSNLVVPNTVKNTDGSL 233
Score = 76.3 bits (187), Expect = 4e-15
Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 11/129 (8%)
Query: 97 LVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEG 156
+ E I I D K +L + + L ++ + + I++++G
Sbjct: 1 MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG 60
Query: 157 LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQ 216
+ +L + + N++ + L L K+LG L ++ N + D ++ +L+
Sbjct: 61 IQYLPNVTKLFLNGNKLTDIKPLTNL---KNLGWLFLDENKIKDLSSLKDL-----KKLK 112
Query: 217 ---CYNNHI 222
+N I
Sbjct: 113 SLSLEHNGI 121
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 101 bits (253), Expect = 2e-24
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 3/139 (2%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
++ + +L ++ L L L N I I L L LE L LG N+I I L L L L
Sbjct: 102 VKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTL 161
Query: 145 NLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENV 204
+L+ N+I I L L KL+ ++ N I L +L L K+L L + +K
Sbjct: 162 SLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGL---KNLDVLELFSQECLNKPIN 218
Query: 205 DGFAIAMVPQLQCYNNHII 223
+ + ++ + ++
Sbjct: 219 HQSNLVVPNTVKNTDGSLV 237
Score = 101 bits (253), Expect = 2e-24
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 11/151 (7%)
Query: 75 IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG 134
I + ++ ++ + + N+ +L L+ N + I+ L L L L L N+++ +
Sbjct: 48 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS 107
Query: 135 LDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIE 194
L L LK L+L+ N I I GL HL +LE + N+I + L L L L++E
Sbjct: 108 LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRL---TKLDTLSLE 164
Query: 195 RNPVCDKENVDGFAIAMVPQLQ---CYNNHI 222
N + D + G +LQ NHI
Sbjct: 165 DNQISDIVPLAGL-----TKLQNLYLSKNHI 190
Score = 67.4 bits (165), Expect = 8e-13
Identities = 19/102 (18%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 105 NHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLE 164
I I + D K +L + + L ++ + + I++++G+ +L +
Sbjct: 12 TPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVT 71
Query: 165 LFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDG 206
+ N++ + L L K+LG L ++ N V D ++
Sbjct: 72 KLFLNGNKLTDIKPLANL---KNLGWLFLDENKVKDLSSLKD 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 95.1 bits (237), Expect = 1e-23
Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
Query: 95 ENLVELDLSMNHIGVIE---NLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI 151
++ EL L + + D+ LE L + I L L LK L L NR+
Sbjct: 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRV 76
Query: 152 ETIEGL--DHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAI 209
+ + L N++ N+I+ L+++ L++ ++L L++ V + +
Sbjct: 77 SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVF 136
Query: 210 AMVPQLQ 216
++PQL
Sbjct: 137 KLLPQLT 143
Score = 38.9 bits (91), Expect = 6e-04
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 6/99 (6%)
Query: 127 NRIEQIQGLDTLVNLKVLNL---KMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLR 183
RI T ++K L L + N + D E+LE + + S+A+L
Sbjct: 5 RRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANL---P 61
Query: 184 RFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHI 222
+ L +L + N V V + L N I
Sbjct: 62 KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 93.6 bits (233), Expect = 5e-22
Identities = 28/139 (20%), Positives = 62/139 (44%), Gaps = 4/139 (2%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
+ + L + L EL ++ N + + + CL +L L N + L L NL++L
Sbjct: 75 ISDLSPLKDLTKLEELSVNRNRLKNLNGIPSA-CLSRLFLDNNELRDTDSLIHLKNLEIL 133
Query: 145 NLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENV 204
+++ N++++I L L KLE+ ++ N I + L L K + +++ ++
Sbjct: 134 SIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRL---KKVNWIDLTGQKCVNEPVK 190
Query: 205 DGFAIAMVPQLQCYNNHII 223
+ + ++ + I
Sbjct: 191 YQPELYITNTVKDPDGRWI 209
Score = 89.3 bits (222), Expect = 2e-20
Identities = 28/159 (17%), Positives = 64/159 (40%), Gaps = 12/159 (7%)
Query: 67 EKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGY 126
NL +++ + + + + + ++I + + L++L L +
Sbjct: 13 FPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSH 72
Query: 127 NRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFK 186
N+I + L L L+ L++ NR++ + G+ L + N ++ SL++L K
Sbjct: 73 NQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSA-CLSRLFLDNNELRDTDSLIHL---K 128
Query: 187 HLGRLNIERNPVCDKENVDGFAIAMVPQLQ---CYNNHI 222
+L L+I N + + +L+ + N I
Sbjct: 129 NLEILSIRNNKLKSIVMLGFL-----SKLEVLDLHGNEI 162
Score = 88.9 bits (221), Expect = 2e-20
Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
+ ++ + N V+ +L + + + +L ++ + + I+ + G+ NLK L
Sbjct: 9 INQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKEL 68
Query: 145 NLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENV 204
+L N+I + L L KLE ++ NR+++L + L RL ++ N + D +++
Sbjct: 69 HLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGI----PSACLSRLFLDNNELRDTDSL 124
Query: 205 DG 206
Sbjct: 125 IH 126
Score = 80.8 bits (200), Expect = 2e-17
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
Query: 81 RIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVN 140
R+K L I + L L L N + ++L L LE L + N+++ I L L
Sbjct: 96 RLKNLNGIPSA----CLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSK 151
Query: 141 LKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
L+VL+L N I GL L+K+ ++ + + ++ L N ++P
Sbjct: 152 LEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEP----VKYQPELYITNTVKDP 204
Score = 72.8 bits (179), Expect = 1e-14
Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 6/124 (4%)
Query: 99 ELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLD 158
E I + L K +LG + + L ++ N + I+++ G+
Sbjct: 1 ESIQRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQ 60
Query: 159 HLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCY 218
L+ +++ N+I L+ L L L L++ RN + + + ++ +L
Sbjct: 61 FFTNLKELHLSHNQISDLSPLKDL---TKLEELSVNRNRLKNLNGIPSACLS---RLFLD 114
Query: 219 NNHI 222
NN +
Sbjct: 115 NNEL 118
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 92.1 bits (229), Expect = 4e-21
Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Query: 75 IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG 134
I ++ + IE + + NL+ L+L N I + L L + +L+L N ++ +
Sbjct: 43 ITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA 102
Query: 135 LDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIE 194
+ L ++K L+L +I + L L L++ + N+I +++ L L +L L+I
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGL---TNLQYLSIG 159
Query: 195 RNPVCD 200
V D
Sbjct: 160 NAQVSD 165
Score = 91.3 bits (227), Expect = 8e-21
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
L+ + + ++++ LDL+ I + L L L+ L L N+I I L L NL+ L
Sbjct: 97 LKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYL 156
Query: 145 NLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENV 204
++ ++ + L +L KL N+I ++ L L +L ++++ N + D +
Sbjct: 157 SIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASL---PNLIEVHLKNNQISDVSPL 213
Query: 205 DGF 207
Sbjct: 214 ANT 216
Score = 84.0 bits (208), Expect = 2e-18
Identities = 25/140 (17%), Positives = 58/140 (41%), Gaps = 5/140 (3%)
Query: 83 KTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLK 142
+ I + N +++ +++ L + L + I+G+ L NL
Sbjct: 7 TAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLI 66
Query: 143 VLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKE 202
L LK N+I + L +L K+ ++ N +++++++ L + + L++ + D
Sbjct: 67 GLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGL---QSIKTLDLTSTQITDVT 123
Query: 203 NVDGFAIAMVPQLQCYNNHI 222
+ G + + L N I
Sbjct: 124 PLAGL--SNLQVLYLDLNQI 141
Score = 82.4 bits (204), Expect = 1e-17
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 4/113 (3%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
+ I L + NL L + + + L L L L N+I I L +L NL +
Sbjct: 141 ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEV 200
Query: 145 NLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
+LK N+I + L + L + + I + +L N+ + P
Sbjct: 201 HLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVF----YNNNLVVPNVVKGP 249
Score = 63.9 bits (156), Expect = 2e-11
Identities = 18/93 (19%), Positives = 31/93 (33%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
+ + L + L L N I I L L L ++ L N+I + L NL ++
Sbjct: 163 VSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIV 222
Query: 145 NLKMNRIETIEGLDHLEKLELFNIAANRIQSLA 177
L I + + + +A
Sbjct: 223 TLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIA 255
Score = 45.1 bits (107), Expect = 2e-05
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 2/99 (2%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGL--DTLVNLK 142
+ I L + NL+E+ L N I + L L + L I + LV
Sbjct: 185 ISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPN 244
Query: 143 VLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVY 181
V+ + N+ N + ++ Y
Sbjct: 245 VVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSY 283
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 90.3 bits (225), Expect = 2e-20
Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
++ + + + +L L L+ N I I L L L N+I I + + L L
Sbjct: 167 VKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSL 226
Query: 145 NLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
+ N+I + L +L +L I N+I + ++ L L LN+ N
Sbjct: 227 KIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDL---TKLKMLNVGSN 275
Score = 83.7 bits (208), Expect = 5e-18
Identities = 42/151 (27%), Positives = 61/151 (40%), Gaps = 10/151 (6%)
Query: 75 IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG 134
I + + + + I+ + + NL L+L+ N I I L LV L L +G N+I I
Sbjct: 46 ITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA 105
Query: 135 LDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIE 194
L L NL+ L L + I I L +L K+ N+ AN S S L L L +
Sbjct: 106 LQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVT 163
Query: 195 RNPVCDKENVDGFAIAMVPQLQ---CYNNHI 222
+ V D + L N I
Sbjct: 164 ESKVKDVTPIANL-----TDLYSLSLNYNQI 189
Score = 82.6 bits (205), Expect = 1e-17
Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 6/129 (4%)
Query: 79 NLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTL 138
I + +L + L + + ++L + KL + ++ IQG++ L
Sbjct: 9 PAPINQIFPDADL---AEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEYL 65
Query: 139 VNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPV 198
NL+ LNL N+I I L +L KL I N+I +++L L +L L + + +
Sbjct: 66 TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNL---TNLRELYLNEDNI 122
Query: 199 CDKENVDGF 207
D +
Sbjct: 123 SDISPLANL 131
Score = 79.5 bits (197), Expect = 1e-16
Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 3/141 (2%)
Query: 56 LSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQ 115
L+ L N L+ ++ + +E++ +L ++ + I+ ++
Sbjct: 5 LATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEY 64
Query: 116 LVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQS 175
L LE L+L N+I I L LV L L + N+I I L +L L + + I
Sbjct: 65 LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISD 124
Query: 176 LASLVYLRRFKHLGRLNIERN 196
++ L L + LN+ N
Sbjct: 125 ISPLANL---TKMYSLNLGAN 142
Score = 78.4 bits (194), Expect = 3e-16
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 5/116 (4%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
+ + L + L L++ N I I + L L+ L++G N+I I L+ L L L
Sbjct: 233 ITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSL 292
Query: 145 NLKMNRIETI--EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPV 198
L N++ E + L L ++ N I + L L + + +
Sbjct: 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASL---SKMDSADFANQVI 345
Score = 74.9 bits (185), Expect = 4e-15
Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 5/126 (3%)
Query: 97 LVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEG 156
L I I L + L + + + L ++ L + ++ +I+G
Sbjct: 2 AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG 61
Query: 157 LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQ 216
+++L LE N+ N+I ++ L L L I N + D + + + +L
Sbjct: 62 IEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDISALQN--LTNLRELY 116
Query: 217 CYNNHI 222
++I
Sbjct: 117 LNEDNI 122
Score = 70.3 bits (173), Expect = 1e-13
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRI--EQIQGLDTLVNLK 142
+ I + + L L++ N I I L+ L L L L N++ E ++ + L NL
Sbjct: 255 ISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314
Query: 143 VLNLKMNRIETIEGLDHLEKLELFNIAANRIQ 174
L L N I I L L K++ + A I+
Sbjct: 315 TLFLSQNHITDIRPLASLSKMDSADFANQVIK 346
Score = 40.2 bits (95), Expect = 7e-04
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 88 IENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQ 131
+E + + NL L LS NHI I L L ++ D I++
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIKK 347
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 89.3 bits (222), Expect = 1e-19
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 7/169 (4%)
Query: 56 LSLLQESTNLAEKLQIYKLIKAVNLRIKT--LRKIENLWMMENLVELDLSMNHIGVIENL 113
L L + + + L L I + + I L + NL L + N I I L
Sbjct: 158 LQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 217
Query: 114 DQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRI 173
L L++L L N+++ I L +L NL L+L N+I + L L KL + AN+I
Sbjct: 218 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 277
Query: 174 QSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHI 222
+++ L L L L + N + D + + L Y N+I
Sbjct: 278 SNISPLAGL---TALTNLELNENQLEDISPISNL--KNLTYLTLYFNNI 321
Score = 87.3 bits (217), Expect = 7e-19
Identities = 29/114 (25%), Positives = 53/114 (46%)
Query: 75 IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG 134
+ + ++ I+ + + NL +++ S N + I L L L + + N+I I
Sbjct: 48 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP 107
Query: 135 LDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
L L NL L L N+I I+ L +L L +++N I +++L L + L
Sbjct: 108 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 161
Score = 87.3 bits (217), Expect = 7e-19
Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 5/143 (3%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
+ + L + L EL L N I I L L L L+L N++E I + L NL L
Sbjct: 255 ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 314
Query: 145 NLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENV 204
L N I I + L KL+ N++ ++SL L ++ L+ N + D +
Sbjct: 315 TLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANL---TNINWLSAGHNQISDLTPL 371
Query: 205 DGFAIAMVPQLQCYNNHIILEDE 227
+ QL +
Sbjct: 372 ANL--TRITQLGLNDQAWTNAPV 392
Score = 80.8 bits (200), Expect = 9e-17
Identities = 32/162 (19%), Positives = 61/162 (37%), Gaps = 10/162 (6%)
Query: 45 LSKKGVISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSM 104
L + + ++ + T LAE L + + ++ + L
Sbjct: 3 LGSATITQDTPINQIFTDTALAE-------KMKTVLGKTNVTDTVSQTDLDQVTTLQADR 55
Query: 105 NHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLE 164
I I+ ++ L L +++ N++ I L L L + + N+I I L +L L
Sbjct: 56 LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLT 115
Query: 165 LFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDG 206
+ N+I + L L +L RL + N + D + G
Sbjct: 116 GLTLFNNQITDIDPLKNL---TNLNRLELSSNTISDISALSG 154
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 81.3 bits (201), Expect = 6e-17
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 94 MENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
+ NL L+L M +I + NL LV LE+L++ N +I+ L +LK L + +++
Sbjct: 195 LFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254
Query: 152 ETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP-VCD 200
IE GL L +L L + N + SL + ++L L++ NP CD
Sbjct: 255 SLIERNAFDGLASLVELNLAH---NNLSSLPHDL-FTPLRYLVELHLHHNPWNCD 305
Score = 72.1 bits (177), Expect = 7e-14
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 12/111 (10%)
Query: 94 MENLVELDLS-MNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNR 150
+ +L+ LDL + + I + L L+ L+LG I+ + L LV L+ L + N
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH 229
Query: 151 IETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
I GL L+KL + N +++ + L LN+ N
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMN---SQVSLIERNA-FDGLASLVELNLAHN 276
Score = 66.3 bits (162), Expect = 4e-12
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 12/112 (10%)
Query: 94 MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN 149
+ +L L L N I IE + L L L+L N + I + L L+ L L+ N
Sbjct: 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157
Query: 150 RIETI-----EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
IE+I + L +L+L +++ ++ +L LN+
Sbjct: 158 PIESIPSYAFNRVPSLMRLDLGE--LKKLEYISEGA-FEGLFNLKYLNLGMC 206
Score = 65.2 bits (159), Expect = 1e-11
Identities = 33/106 (31%), Positives = 45/106 (42%), Gaps = 16/106 (15%)
Query: 95 ENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNR 150
N L+L N+I +I+ L LE L LG N I QI+ + L +L L L N
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134
Query: 151 IETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRL 191
+ I L L +L L N N I+S+ S F + L
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRN---NPIESIPSYA----FNRVPSL 173
Score = 52.8 bits (127), Expect = 9e-08
Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 119 LEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE-----GLDHLEKLELFNIAAN 171
L+L N I+ IQ L +L+VL L N I IE GL L LELF+ N
Sbjct: 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD---N 133
Query: 172 RIQSLASLVYLRRFKHLGRLNIERNP 197
+ + S L L + NP
Sbjct: 134 WLTVIPSGA-FEYLSKLRELWLRNNP 158
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 80.9 bits (200), Expect = 7e-17
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 12/115 (10%)
Query: 94 MENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
+ NL L+L+M ++ I NL L+ L++LDL N + I+ L++L+ L + ++I
Sbjct: 184 LSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243
Query: 152 ETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP-VCD 200
+ IE L L ++ L + N + L + HL R+++ NP C+
Sbjct: 244 QVIERNAFDNLQSLVEINLAH---NNLTLLPHDL-FTPLHHLERIHLHHNPWNCN 294
Score = 73.6 bits (181), Expect = 2e-14
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 12/111 (10%)
Query: 94 MENLVELDLS-MNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNR 150
+ +L LDL + + I + L L L+L + +I L L+ L L+L N
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNH 218
Query: 151 IETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
+ I GL HL+KL + ++IQ + + L +N+ N
Sbjct: 219 LSAIRPGSFQGLMHLQKLWMIQ---SQIQVIERNA-FDNLQSLVEINLAHN 265
Score = 68.6 bits (168), Expect = 8e-13
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 12/112 (10%)
Query: 94 MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN 149
+ +L L LS NHI IE + L L L+L NR+ I L LK L L+ N
Sbjct: 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146
Query: 150 RIETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
IE+I + L +L+L + R+ ++ +L LN+
Sbjct: 147 PIESIPSYAFNRIPSLRRLDLGEL--KRLSYISEGA-FEGLSNLRYLNLAMC 195
Score = 64.4 bits (157), Expect = 2e-11
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 95 ENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNR 150
N L+L N I +I+ L LE L L N I I+ + L NL L L NR
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123
Query: 151 IETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRL 191
+ TI +L KL+ + N I+S+ S F + L
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYA----FNRIPSL 162
Score = 53.2 bits (128), Expect = 7e-08
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 14/105 (13%)
Query: 119 LEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE-----GLDHLEKLELFNIAAN 171
L+L N+I+ I+ L +L++L L N I TIE GL +L LELF+ N
Sbjct: 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD---N 122
Query: 172 RIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQ 216
R+ ++ + L L + NP+ E++ +A +P L+
Sbjct: 123 RLTTIPNGA-FVYLSKLKELWLRNNPI---ESIPSYAFNRIPSLR 163
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 75.0 bits (185), Expect = 6e-16
Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 8/123 (6%)
Query: 85 LRKIENLWMMENLVELDLSMNHIG--VIENLDQLVCLEKLDLGYNRIE--QIQGLDTLVN 140
+ + NL L + + I NL L L LD+ ++ + + ++TL
Sbjct: 78 ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137
Query: 141 LKVLNLKMN-RIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVC 199
+ ++L N I I L L +L+ NI + + + L +L +
Sbjct: 138 VNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDF---PKLNQLYAFSQTIG 194
Query: 200 DKE 202
K+
Sbjct: 195 GKK 197
Score = 74.2 bits (183), Expect = 1e-15
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 84 TLRKIENLWMMENLVELDLSMNHIG--VIENLDQLVCLEKLDLGYN-RIEQIQGLDTLVN 140
T KI NL + +L LD+S + ++ ++ L + +DL YN I I L TL
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPE 160
Query: 141 LKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSL 176
LK LN++ + + G++ KL + I
Sbjct: 161 LKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGK 196
Score = 72.3 bits (178), Expect = 5e-15
Identities = 16/106 (15%), Positives = 40/106 (37%), Gaps = 3/106 (2%)
Query: 94 MENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI-- 151
M +L + L+ ++ + ++ ++ L + + L NL+ L + +
Sbjct: 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTS 102
Query: 152 ETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
+ I L L L L +I+ + L + + +++ N
Sbjct: 103 DKIPNLSGLTSLTLLDISHSAHDDS-ILTKINTLPKVNSIDLSYNG 147
Score = 57.7 bits (140), Expect = 6e-10
Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 9/106 (8%)
Query: 51 ISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNH-IGV 109
++ + + L T+L L I L KI L + +DLS N I
Sbjct: 100 VTSDKIPNLSGLTSL-TLLDISH----SAHDDSILTKINTL---PKVNSIDLSYNGAITD 151
Query: 110 IENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIE 155
I L L L+ L++ ++ + +G++ L L I +
Sbjct: 152 IMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGKK 197
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 75.8 bits (187), Expect = 1e-15
Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 14/117 (11%)
Query: 94 MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN 149
+ L L L N + + + L L L L NRI + L +L L L N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187
Query: 150 RIETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP-VCD 200
R+ + L L L LF N + +L + L + L L + NP VCD
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFA---NNLSALPTEA-LAPLRALQYLRLNDNPWVCD 240
Score = 70.8 bits (174), Expect = 6e-14
Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 17/122 (13%)
Query: 79 NLRIKTLRKIENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG-- 134
N +++++ + L L L + + L L+ L L N ++ +
Sbjct: 90 NAQLRSVDP-ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148
Query: 135 LDTLVNLKVLNLKMNRIETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLG 189
L NL L L NRI ++ GL L++L L NR+ + F+ LG
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ---NRVAHVHPHA----FRDLG 201
Query: 190 RL 191
RL
Sbjct: 202 RL 203
Score = 63.5 bits (155), Expect = 2e-11
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 18/121 (14%)
Query: 81 RIKTLRKIENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYN-RIEQIQG--L 135
RI + + NL L L N + I+ L LE+LDL N ++ +
Sbjct: 43 RISHVPA-ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101
Query: 136 DTLVNLKVLNLKMNRIETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGR 190
L L L+L ++ + GL L+ L L + N +Q+L F+ LG
Sbjct: 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD---NALQALPDDT----FRDLGN 154
Query: 191 L 191
L
Sbjct: 155 L 155
Score = 60.0 bits (146), Expect = 2e-10
Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 8/108 (7%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN-R 150
+ L N I + L L L N + +I L L+ L+L N +
Sbjct: 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92
Query: 151 IETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
+ +++ L +L ++ +Q L + R L L ++ N
Sbjct: 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGL-FRGLAALQYLYLQDN 139
Score = 36.5 bits (85), Expect = 0.012
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 9/64 (14%)
Query: 139 VNLKVLNLKMNRIETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNI 193
+ + L NRI + +L L L + N + + + L +L++
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHS---NVLARIDAAA-FTGLALLEQLDL 87
Query: 194 ERNP 197
N
Sbjct: 88 SDNA 91
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 72.2 bits (177), Expect = 4e-14
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 13/119 (10%)
Query: 94 MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN 149
+ NL LDLS NH+ ++ L LE L L N I + + + L+ L L N
Sbjct: 87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146
Query: 150 RIETIE-----GLDHLEKLELFNIAANRIQSL--ASLVYLRRFKHLGRLNIERNP-VCD 200
+I + L KL L ++++N+++ L L L + G L + NP CD
Sbjct: 147 QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG-LYLHNNPLECD 204
Score = 71.0 bits (174), Expect = 9e-14
Identities = 31/127 (24%), Positives = 48/127 (37%), Gaps = 14/127 (11%)
Query: 81 RIKTLRKIENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LD 136
+ LR + NL L LS NH+ I + + L LDL N + +
Sbjct: 50 NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS 109
Query: 137 TLVNLKVLNLKMNRIETIE-----GLDHLEKLELFNIAANRIQSLAS--LVYLRRFKHLG 189
L L+VL L N I ++ + L+KL L N+I + + L
Sbjct: 110 DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ---NQISRFPVELIKDGNKLPKLM 166
Query: 190 RLNIERN 196
L++ N
Sbjct: 167 LLDLSSN 173
Score = 51.4 bits (123), Expect = 3e-07
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 119 LEKLDLGYNRIEQIQG---LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRI 173
LDL +N + +++ L NL L L N + I + L ++++N +
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
Query: 174 QSLASLVYLRRFKHLGRLNIERNP 197
+L + + L L + N
Sbjct: 101 HTLDEFL-FSDLQALEVLLLYNNH 123
Score = 39.8 bits (93), Expect = 0.001
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 22/87 (25%)
Query: 85 LRKIENLWMMEN---------------LVELDLSMNHI-----GVIENLDQLVCLEKLDL 124
L+ +E L + N L +L LS N I +I++ ++L L LDL
Sbjct: 111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170
Query: 125 GYNRIEQIQG--LDTLVNLKVLNLKMN 149
N+++++ L L L ++
Sbjct: 171 SSNKLKKLPLTDLQKLPAWVKNGLYLH 197
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 71.2 bits (175), Expect = 6e-14
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 9/105 (8%)
Query: 94 MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI 151
N+ ELDLS N + I L LE L+L N + + L++L L+ L+L N +
Sbjct: 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYV 92
Query: 152 ETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
+ + +E L N N I ++ R + + + N
Sbjct: 93 QELLVGPSIETLHAAN---NNISRVSC----SRGQGKKNIYLANN 130
Score = 67.7 bits (166), Expect = 1e-12
Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 2/119 (1%)
Query: 81 RIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQ-GLDTLV 139
I T+ E + L L+L N I ++ L+ LDL N++ + +
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA 214
Query: 140 NLKVLNLKMNRIETI-EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
+ ++L+ N++ I + L + LE F++ N + + + + + +
Sbjct: 215 GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273
Score = 65.4 bits (160), Expect = 5e-12
Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 6/114 (5%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
L + +L + L LDL+ N++ + +E L N I ++ K +
Sbjct: 70 LYETLDLESLSTLRTLDLNNNYVQELLVGPS---IETLHAANNNISRVS-CSRGQGKKNI 125
Query: 145 NLKMNRIETIEGLD--HLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
L N+I + LD +++ ++ N I ++ L LN++ N
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Score = 63.5 bits (155), Expect = 2e-11
Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 87 KIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLD--TLVNLKVL 144
++ L + ++ L + N+I + + + + L N+I ++ LD ++ L
Sbjct: 91 YVQELLVGPSIETLHAANNNISRVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149
Query: 145 NLKMNRIETIEG---LDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
+LK+N I+T+ + LE N+ N I + V + K L
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTL 196
Score = 51.1 bits (123), Expect = 2e-07
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Query: 109 VIENLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIEG--LDHLEKLE 164
+ +N ++ + + + ++Q + N+K L+L N + I L KLE
Sbjct: 5 IKQNGNRY---KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 165 LFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
L N+++N + L L L L++ N
Sbjct: 62 LLNLSSNVLYETLDLESL---STLRTLDLNNN 90
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 72.1 bits (177), Expect = 7e-14
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
NL L ++ ++ + + LV L L+L YN I I+G L L+ L+ + L ++
Sbjct: 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284
Query: 152 ETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP-VCD 200
+E L L + N++ N++ +L V +L L ++ NP CD
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESV-FHSVGNLETLILDSNPLACD 335
Score = 69.4 bits (170), Expect = 5e-13
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 26/157 (16%)
Query: 81 RIKTLRKIENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LD 136
RIKTL + + +L EL+L+ N + +E + L L L L NR++ I
Sbjct: 43 RIKTLNQ-DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101
Query: 137 TLVNLKVLNLKMNRIETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRL 191
L NL L++ N+I + L +L+ LE+ + N + ++ F L L
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD---NDLVYISHRA----FSGLNSL 154
Query: 192 ---NIERNPVCDKENVDGFAIAMVPQLQC---YNNHI 222
+E+ + ++ A++ + L + +I
Sbjct: 155 EQLTLEKCNL---TSIPTEALSHLHGLIVLRLRHLNI 188
Score = 68.2 bits (167), Expect = 1e-12
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
LDL N I + LE+L+L N + ++ + L NL+ L L+ NR+
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92
Query: 152 ETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
+ I L L +I+ N+I L + + +L L + N
Sbjct: 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYM-FQDLYNLKSLEVGDND 139
Score = 59.7 bits (145), Expect = 6e-10
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 94 MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN 149
+ L L+LS N I IE L +L+ L+++ L ++ ++ L L+VLN+ N
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306
Query: 150 RIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVC 199
++ T+E + LE + +N + L+++ R + N + P C
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFN-RQQPTC 357
Score = 56.6 bits (137), Expect = 7e-09
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 13/138 (9%)
Query: 94 MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN 149
+ +L +L L ++ I L L L L L + I I+ L LKVL +
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210
Query: 150 RIETIEGLDHLEKLEL--FNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGF 207
+ L L L +I + ++ L +R +L LN+ NP+ ++G
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA-VRHLVYLRFLNLSYNPI---STIEGS 266
Query: 208 AIAMVPQLQC---YNNHI 222
+ + +LQ +
Sbjct: 267 MLHELLRLQEIQLVGGQL 284
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 70.5 bits (173), Expect = 2e-13
Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 21/163 (12%)
Query: 51 ISENLLSLLQESTNLAEKL-----QIYKLIKAVNLRIKTL-------RKIENLWMMENLV 98
+S NLLS L + E+L I + VN+ + L L LV
Sbjct: 193 VSYNLLSTLAIPIAV-EELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLV 251
Query: 99 ELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG-LDTLVNLKVLNLKMNRIETIE 155
E+DLS N + I ++ LE+L + NR+ + + LKVL+L N + +E
Sbjct: 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVE 311
Query: 156 -GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
++LE + N I +L L L L + N
Sbjct: 312 RNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTLSHND 350
Score = 63.9 bits (156), Expect = 2e-11
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 94 MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI 151
L L +S N++ IE+ L+ L L NR+ + L + +L N+ N +
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLL 198
Query: 152 ETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
T+ +E+L+ + N I + V L L ++ N
Sbjct: 199 STLAIPIAVEELDASH---NSINVVRGPV----NVELTILKLQHN 236
Score = 62.8 bits (153), Expect = 6e-11
Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 7/109 (6%)
Query: 94 MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN 149
+ N + + + + LD +E L+L +IE+I ++ L + N
Sbjct: 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103
Query: 150 RIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
I + ++ L + + N + SL + L L++ N
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI-FHNTPKLTTLSMSNN 151
Score = 51.6 bits (124), Expect = 2e-07
Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 7/106 (6%)
Query: 97 LVELDLSMNHIGVIENLDQ--LVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIE 152
++ + M V + L + + + + ++ LD+ +++LNL +IE
Sbjct: 23 FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82
Query: 153 TIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
I+ + ++ + N I+ L V + L L +ERN
Sbjct: 83 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHV-FQNVPLLTVLVLERN 127
Score = 38.5 bits (90), Expect = 0.003
Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Query: 112 NLDQLVCLEKLDLGYNRIEQIQGLD--TLVNLKVLNLKMNRIETI--EGLDHLEKLELFN 167
NL + + + G + TL N K++ K + + + LD ++EL N
Sbjct: 16 NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 75
Query: 168 IAANRIQSLASLVYLRRFKHLGRLNIERN 196
+ +I+ + + + +L + N
Sbjct: 76 LNDLQIEEIDTYA-FAYAHTIQKLYMGFN 103
Score = 31.9 bits (73), Expect = 0.34
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Query: 85 LRKIE-NLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKV 143
L +E N + L L L N I + L L+ L L +N + N+
Sbjct: 307 LLHVERNQPQFDRLENLYLDHNSIVTL-KLSTHHTLKNLTLSHNDWDCNSLRALFRNVAR 365
Query: 144 LNLKMN 149
+
Sbjct: 366 PAVDDA 371
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 68.1 bits (167), Expect = 6e-13
Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 8/115 (6%)
Query: 94 MENLVELDLSMN-HIGVI--ENLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKM 148
+ +L L ++ N + +L L LDL ++EQ+ ++L +L+VLN+
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 149 NRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP-VCD 200
N +++ L L++ + + N I + L LN+ +N C
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263
Score = 67.3 bits (165), Expect = 1e-12
Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQI----QGLDTLVNLKVLNLKMN 149
+ L+L N + + + D+L L KL L N + Q +LK L+L N
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88
Query: 150 RIETI-EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
+ T+ LE+LE + + ++ ++ ++L L+I
Sbjct: 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136
Score = 65.8 bits (161), Expect = 3e-12
Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 17/156 (10%)
Query: 51 ISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVI 110
+S N + + + E+L+ + +K + + + NL+ LD+S H V
Sbjct: 85 LSFNGVITMSSNFLGLEQLEHLDF---QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141
Query: 111 EN--LDQLVCLEKLDLGYNR-IEQIQG--LDTLVNLKVLNLKMNRIETIE-----GLDHL 160
N + L LE L + N E L NL L+L ++E + L L
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201
Query: 161 EKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
+ L + + N SL + + L L+ N
Sbjct: 202 QVLNMSH---NNFFSLDTFP-YKCLNSLQVLDYSLN 233
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 68.6 bits (168), Expect = 1e-12
Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 10/150 (6%)
Query: 81 RIKTLRKIENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQ--GLD 136
++ L + + L LDLS I IE+ L L L L N I+ +
Sbjct: 39 PLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97
Query: 137 TLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIE 194
L +L+ L + ++E + HL+ L+ N+A N IQS Y +L L++
Sbjct: 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Query: 195 RNPVCDKENVDGFAIAMVPQLQCYNNHIIL 224
N + +++ + ++ Q+ N + L
Sbjct: 158 SNKI---QSIYCTDLRVLHQMPLLNLSLDL 184
Score = 65.5 bits (160), Expect = 1e-11
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 81 RIKTLRKIENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQI---QGL 135
+K + + + NL+ LD+S H V N + L LE L + N ++
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466
Query: 136 DTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNI 193
L NL L+L ++E + + L L++ N+A+N+++S+ + R L ++ +
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI-FDRLTSLQKIWL 525
Query: 194 ERNP-VCD 200
NP C
Sbjct: 526 HTNPWDCS 533
Score = 65.5 bits (160), Expect = 1e-11
Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 10/126 (7%)
Query: 78 VNLRIKTLRKI-ENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG 134
KI +NL + LDLS N + + + L+ LDL I+ I+
Sbjct: 12 YQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69
Query: 135 --LDTLVNLKVLNLKMNRIETI--EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGR 190
+L +L L L N I+++ L L+ + SL + + K L
Sbjct: 70 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP-IGHLKTLKE 128
Query: 191 LNIERN 196
LN+ N
Sbjct: 129 LNVAHN 134
Score = 62.8 bits (153), Expect = 8e-11
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 5/109 (4%)
Query: 94 MENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQI----QGLDTLVNLKVLNLKMN 149
+++L L + N G + L LE LDL N + Q +LK L+L N
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383
Query: 150 RIETI-EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
+ T+ LE+LE + + ++ ++ ++L L+I
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Score = 61.3 bits (149), Expect = 3e-10
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Query: 96 NLVELDLSMNHIGVI-ENLDQLVCLEKLDLGYNRIEQIQG---LDTLVNLKVLNLKMNRI 151
+L LDLS N + + N L LE LD ++ ++Q+ +L NL L++
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 152 ETI--EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
+ L LE+ +A N Q ++L L++ +
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Score = 60.5 bits (147), Expect = 4e-10
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 94 MENLVELDLSMNHIGVI---ENLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKM 148
+ +L L ++ N + +L L LDL ++EQ+ ++L +L+VLN+
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 149 NRIETIEG--LDHLEKLELFNIAANRIQ-SLASLVYLRRFKHLGRLNIERNPVC 199
N+++++ D L L+ + N S + YL R+ + + + C
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKC 557
Score = 40.1 bits (94), Expect = 0.001
Identities = 22/158 (13%), Positives = 53/158 (33%), Gaps = 10/158 (6%)
Query: 51 ISENLLSLLQESTNLAEKLQIYK-LIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGV 109
I L +L + L L + + + ++ L + N L++ I
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223
Query: 110 IENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGL--------DHLE 161
+ L+ + +E+ L L L ++ R+ ++ + L
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFD-KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282
Query: 162 KLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVC 199
+ F++ + I+ + Y ++HL +N +
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 67.8 bits (166), Expect = 2e-12
Identities = 20/119 (16%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVI---ENLDQLVCLEKLDLGYNRIE-QIQGLDTLVN 140
+ + + + E + + + N++ +L ++ L L+ YN++E ++ + +
Sbjct: 295 WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIK 354
Query: 141 LKVLNLKMNRIETI--EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
L LNL N+I I E++E + A N+++ + ++ + + ++ N
Sbjct: 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE 413
Score = 63.1 bits (154), Expect = 6e-11
Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 17/160 (10%)
Query: 54 NLLSLLQESTNLAEKLQIYKLIKAVNL-----RIKTLRKIENLWMMENLVELDLSMNHI- 107
+S Q + K + +KT +L M+ L L+ N +
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343
Query: 108 GVIENLDQLVCLEKLDLGYNRIEQI--QGLDTLVNLKVLNLKMNRIETI---EGLDHLEK 162
G + + L L+L YN+I +I ++ L+ N+++ I +
Sbjct: 344 GKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403
Query: 163 LELFNIAANRIQSLASLVY------LRRFKHLGRLNIERN 196
+ + + N I S+ + + ++ +N+ N
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443
Score = 57.0 bits (138), Expect = 7e-09
Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 20/136 (14%)
Query: 81 RIKTLRKIENLWMMENLVELDLSMNHI---------GVIENLDQLVCLEKLDLGYNRIEQ 131
++K + I + + + +D S N I + + + + ++L N+I +
Sbjct: 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447
Query: 132 I--QGLDTLVNLKVLNLKMNRIETI---------EGLDHLEKLELFNIAANRIQSLASLV 180
+ T L +NL N + I E + L ++ N++ L+
Sbjct: 448 FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF 507
Query: 181 YLRRFKHLGRLNIERN 196
+L +++ N
Sbjct: 508 RATTLPYLVGIDLSYN 523
Score = 54.3 bits (131), Expect = 4e-08
Identities = 23/126 (18%), Positives = 39/126 (30%), Gaps = 18/126 (14%)
Query: 89 ENLWMMENLVELDLSMNHI---------GVIENLDQLVCLEKLDLGYNRIEQIQ---GLD 136
E L ++L N + EN L +DL +N++ ++
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510
Query: 137 TLVNLKVLNLKMNRIETI-EGLDHLEKLELFNIAANRIQSLASLVY-----LRRFKHLGR 190
TL L ++L N + L+ F I R + + L +
Sbjct: 511 TLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570
Query: 191 LNIERN 196
L I N
Sbjct: 571 LQIGSN 576
Score = 43.9 bits (104), Expect = 8e-05
Identities = 23/207 (11%), Positives = 69/207 (33%), Gaps = 34/207 (16%)
Query: 24 STLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQIYKLIKAVNLRIK 83
S + + ++ D + ++ ++ + ++ + +I +
Sbjct: 134 SDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN 193
Query: 84 TLRKI-ENLWMMENLVELDLSMNHI--------GVIENLDQLVCLEKLDLGYNRIEQIQG 134
+ + + + + L + + + EN + + DL ++ ++ +
Sbjct: 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTD 253
Query: 135 LD---------------TLVNLKVLNLKMNRIETIE----------GLDHLEKLELFNIA 169
++ L ++++N+ NR + E EK+++ I
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313
Query: 170 ANRIQSLASLVYLRRFKHLGRLNIERN 196
N +++ L++ K LG L N
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYN 340
Score = 43.5 bits (103), Expect = 9e-05
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 89 ENLWMMENLVELDLSMNHI-GVIENLDQLVCLEKLDLGYNRIEQI--QGLDTLVNLKVLN 145
E + + +L +L + N I V E + + LD+ N I + + +
Sbjct: 560 EGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYM 617
Query: 146 LKMNRIETIEGLDHLE 161
L ++ + I G D L+
Sbjct: 618 LFYDKTQDIRGCDALD 633
Score = 37.3 bits (87), Expect = 0.010
Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 9/101 (8%)
Query: 96 NLVELDLSMNHI-GVI-ENLDQLVCLEKLDLGYNRIEQIQ------GLDTLVNLKVLNLK 147
+ L L G + + + QL LE L LG + + + G+ ++ +
Sbjct: 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141
Query: 148 MNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
+ +D+ + + ++ + I S +++ +
Sbjct: 142 RMHYQKTF-VDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181
Score = 31.2 bits (71), Expect = 0.77
Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 11/108 (10%)
Query: 99 ELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQI--QGLDTLVNLKVLNLKMNRIETI-- 154
ELD+ GV +L+ + L L + L L+VL L + +
Sbjct: 65 ELDMWGAQPGV--SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122
Query: 155 ----EGLDHLEKLELFNIAANRIQ-SLASLVYLRRFKHLGRLNIERNP 197
+G+ E Q + F L + I +P
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDP 170
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 67.3 bits (164), Expect = 3e-12
Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 21/163 (12%)
Query: 51 ISENLLSLLQESTNLAEKL-----QIYKLIKAVNLRIKTLR-------KIENLWMMENLV 98
+S NLLS L + E+L I + VN+ + L+ L LV
Sbjct: 199 VSYNLLSTLAIPIAV-EELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLV 257
Query: 99 ELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG-LDTLVNLKVLNLKMNRIETIE 155
E+DLS N + I ++ LE+L + NR+ + + LKVL+L N + +E
Sbjct: 258 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVE 317
Query: 156 -GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
++LE + N I +L L L L + N
Sbjct: 318 RNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTLSHND 356
Score = 62.3 bits (151), Expect = 1e-10
Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 7/109 (6%)
Query: 94 MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN 149
+ L+L+ I I+ ++KL +G+N I + + L VL L+ N
Sbjct: 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133
Query: 150 RIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
+ ++ + KL +++ N ++ + + L L + N
Sbjct: 134 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSN 181
Score = 61.5 bits (149), Expect = 2e-10
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 94 MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI 151
L L +S N++ IE+ L+ L L NR+ + L + +L N+ N +
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLL 204
Query: 152 ETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
T+ +E+L+ + N I + V L L ++ N
Sbjct: 205 STLAIPIAVEELDASH---NSINVVRGPV----NVELTILKLQHN 242
Score = 50.7 bits (121), Expect = 5e-07
Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 7/106 (6%)
Query: 97 LVELDLSMNHIGVIENLDQ--LVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIE 152
++ + M V + L + + + + ++ LD+ +++LNL +IE
Sbjct: 29 FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 88
Query: 153 TIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
I+ + ++ + N I+ L V + L L +ERN
Sbjct: 89 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHV-FQNVPLLTVLVLERN 133
Score = 29.9 bits (67), Expect = 1.9
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Query: 89 ENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKM 148
N + L L L N I + L L+ L L +N + N+ +
Sbjct: 318 RNQPQFDRLENLYLDHNSIVTL-KLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDD 376
Query: 149 N 149
Sbjct: 377 A 377
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 66.4 bits (162), Expect = 5e-12
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 9/105 (8%)
Query: 94 MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI 151
N+ ELDLS N + I L LE L+L N + + L++L L+ L+L N +
Sbjct: 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYV 92
Query: 152 ETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
+ + +E L N N I ++ R + + + N
Sbjct: 93 QELLVGPSIETLHAAN---NNISRVSC----SRGQGKKNIYLANN 130
Score = 62.2 bits (151), Expect = 1e-10
Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 2/125 (1%)
Query: 81 RIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQ-GLDTLV 139
I T+ E + L L+L N I ++ L+ LDL N++ + +
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA 214
Query: 140 NLKVLNLKMNRIETI-EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPV 198
+ ++L+ N++ I + L + LE F++ N + + + + + +
Sbjct: 215 GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274
Query: 199 CDKEN 203
+N
Sbjct: 275 LTGQN 279
Score = 61.4 bits (149), Expect = 2e-10
Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 6/114 (5%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
L + +L + L LDL+ N++ + +E L N I ++ K +
Sbjct: 70 LYETLDLESLSTLRTLDLNNNYVQELLVGPS---IETLHAANNNISRVS-CSRGQGKKNI 125
Query: 145 NLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
L N+I + +++ ++ N I ++ L LN++ N
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Score = 48.3 bits (115), Expect = 3e-06
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Query: 109 VIENLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIEG--LDHLEKLE 164
+ +N ++ + + + ++Q + N+K L+L N + I L KLE
Sbjct: 5 IKQNGNRY---KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 165 LFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
L N+++N + L L L L++ N
Sbjct: 62 LLNLSSNVLYETLDLESL---STLRTLDLNNN 90
Score = 36.7 bits (85), Expect = 0.011
Identities = 14/184 (7%), Positives = 45/184 (24%), Gaps = 11/184 (5%)
Query: 24 STLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQIYKLIKAVNLRIK 83
S + + V + + + V + A +K +
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALL 318
Query: 84 TLRKIEN------LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQ-- 133
+ + E E+D + + + L+ +++
Sbjct: 319 SGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSN 378
Query: 134 GLDTLVNLKVLNLKMNRIETIEG-LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLN 192
G L + ++ + L+L R + + + + +
Sbjct: 379 GRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWD 438
Query: 193 IERN 196
+ ++
Sbjct: 439 MYQH 442
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 66.6 bits (163), Expect = 6e-12
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 15/129 (11%)
Query: 94 MENLVELDLSMNHIGVIEN----------LDQLVCLEKLDLGYNRIEQIQG--LDTLVNL 141
+E L LDL N++ + L L L L+L N ++I L L
Sbjct: 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562
Query: 142 KVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP-V 198
K+++L +N + T+ ++ L+ N+ N I S+ V+ F++L L++ NP
Sbjct: 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622
Query: 199 CDKENVDGF 207
C E++ F
Sbjct: 623 CTCESIAWF 631
Score = 62.7 bits (153), Expect = 1e-10
Identities = 31/158 (19%), Positives = 66/158 (41%), Gaps = 15/158 (9%)
Query: 51 ISENLLSLLQESTNLAEKLQIYKLIKAVNL---RIKTLRKIENLWMMENLVELDLSMNHI 107
+S + SL + L L +NL +I + + + +L LDL +N I
Sbjct: 360 LSNSFTSLRTLTNETFVSLAHSPL-HILNLTKNKISKIES-DAFSWLGHLEVLDLGLNEI 417
Query: 108 GVI---ENLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIEG----LD 158
G + L + ++ L YN+ Q+ + +L+ L L+ ++ ++
Sbjct: 418 GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477
Query: 159 HLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
L L + +++ N I ++ + L + L L+++ N
Sbjct: 478 PLRNLTILDLSNNNIANINDDM-LEGLEKLEILDLQHN 514
Score = 56.9 bits (138), Expect = 5e-09
Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 9/115 (7%)
Query: 91 LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQI--QGLDTLVNLKVLNL 146
NL EL L N I I+N + L LDL +N + L NL+ L L
Sbjct: 93 FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLL 152
Query: 147 KMNRIETIE----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
N+I+ ++ + L+ +++N+I+ + L L +
Sbjct: 153 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQ 206
Score = 55.8 bits (135), Expect = 1e-08
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 9/122 (7%)
Query: 85 LRKIEN--LWMMENLVELDLSMNHIGVI--ENLDQLVCLEKLDLGYNRIEQIQ--GLDTL 138
+ K+E + L L+L N + + + L +L L N I++I+
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120
Query: 139 VNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSL-ASLVYLRRFKHLGRLNIER 195
NL L+L N + + + LE L+ ++ N+IQ+L + + + L +L +
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180
Query: 196 NP 197
N
Sbjct: 181 NQ 182
Score = 55.4 bits (134), Expect = 2e-08
Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 10/113 (8%)
Query: 94 MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQ----GLDTLVNLKVLNLK 147
+NL+ LDLS N + + QL L++L L N+I+ ++ + +LK L L
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179
Query: 148 MNRIETIE--GLDHLEKLELFNIAANRIQSL--ASLVYLRRFKHLGRLNIERN 196
N+I+ + +L + ++ L + L++ +
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232
Score = 54.2 bits (131), Expect = 5e-08
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 16/116 (13%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQI-----------QGLDTLVNLK 142
NL LDLS N++ V+ N L LE L YN I+ + + L+ +
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308
Query: 143 VLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
++ + + I+ L+ LE N+ N I + S + +L L++ +
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM-FTGLINLKYLSLSNS 363
Score = 50.8 bits (122), Expect = 5e-07
Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 15/146 (10%)
Query: 82 IKTLRKIENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDT 137
+ L + L + + + +S+ + I++ L CLE L++ N I I+
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351
Query: 138 LVNLKVLNLKMNRIETIE-------GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGR 190
L+NLK L+L + L H L + N+ N+I + S HL
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHS-PLHILNLTKNKISKIESDA-FSWLGHLEV 409
Query: 191 LNIERNPVCDKENVDGFAIAMVPQLQ 216
L++ N + + + G + +
Sbjct: 410 LDLGLNEI--GQELTGQEWRGLENIF 433
Score = 50.8 bits (122), Expect = 6e-07
Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 27/152 (17%)
Query: 94 MENLVELDLSMNHIG-----VIENLDQLVCLEKLDLGYNRIEQI-----QGLDTLVNLKV 143
+ L L L+ +G + + L L +++ GL NL +
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK-WTNLTM 252
Query: 144 LNLKMNRIETI--EGLDHLEKLELFNIAANRIQS--------LASLVYLRRFKHLGRLNI 193
L+L N + + + L +LE F + N IQ L ++ YL + + +I
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312
Query: 194 ERNPVCDKENVDGFAIAMVPQLQ---CYNNHI 222
+ +D F+ + L+ +N I
Sbjct: 313 SLASL---PKIDDFSFQWLKCLEHLNMEDNDI 341
Score = 49.2 bits (118), Expect = 2e-06
Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 6/105 (5%)
Query: 96 NLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIET 153
+ D S + + + D + L+L +N++ ++ L L++ N I
Sbjct: 5 SHEVADCSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63
Query: 154 IE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
+E L L++ N+ N + L+ +L L++ N
Sbjct: 64 LEPELCQKLPMLKVLNLQHNELSQLSDKT-FAFCTNLTELHLMSN 107
Score = 28.4 bits (64), Expect = 5.8
Identities = 10/60 (16%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 139 VNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
V+ +V + ++ + ++ L L + N+++ L + R+ L L++ N
Sbjct: 4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTH---NQLRRLPAAN-FTRYSQLTSLDVGFN 59
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 63.9 bits (156), Expect = 6e-12
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
L +++ S N I IE + + ++ L NR+E +Q L +LK L L+ NRI
Sbjct: 58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117
Query: 152 ETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP-VCD 200
+ L + L ++ N+I ++A L LN+ NP C+
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGA-FDTLHSLSTLNLLANPFNCN 168
Score = 58.9 bits (143), Expect = 3e-10
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 11/105 (10%)
Query: 96 NLVELDLSMNHIGVIE---NLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNR 150
EL L+ N V+E +L L K++ N+I I+ + + + L NR
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92
Query: 151 IETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNI 193
+E ++ LE L+ + +NRI + + F L + +
Sbjct: 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDS----FIGLSSVRL 133
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.6 bits (159), Expect = 1e-11
Identities = 74/482 (15%), Positives = 145/482 (30%), Gaps = 166/482 (34%)
Query: 27 KNLAQVLQNAPAIIN-------EDLLSKKGVIS-ENLLSLLQESTNLAEKLQIYKLI--- 75
K++ V + A ++ +D+ K ++S E + ++ +L
Sbjct: 19 KDILSVFE--DAFVDNFDCKDVQDMP--KSILSKEEIDHIIMSKD---AVSGTLRLFWTL 71
Query: 76 -----KAVNLRIKTLRKIENLWMMENLVE--LDLSMNHIGVIENLDQL----VCLEKLDL 124
+ V ++ + +I ++M + SM IE D+L K ++
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 125 GYNRIEQIQGLDT-LVNLK---------------------VLN--------------LKM 148
+R++ L L+ L+ V L +
Sbjct: 132 --SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 149 NRIETIEG-LDHLEKLELFNIAAN-------------RIQSLASLVYLRRF----KHLGR 190
+ E L+ L+KL L+ I N RI S+ + LRR +
Sbjct: 190 KNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSNIKLRIHSIQA--ELRRLLKSKPYENC 246
Query: 191 LNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYDVRTETLKDLMVQ 250
L + N V + + + F + C + L T + V
Sbjct: 247 LLVLLN-VQNAKAWNAFNL------SC-----------KILL----------TTRFKQVT 278
Query: 251 RERQNALASQRKSEEKSKAFVENLEGDFLFNVQFENDVEG--QEMLK-----LCTIPTKL 303
A + + S + E L + + +E+L L I +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 304 GRSVAELYNNFKRDFLEVSSKLYEFGTSQHSLRQNEVDEFQAVYRAL------------- 350
R ++N+K + KL + SL E E++ ++ L
Sbjct: 338 -RDGLATWDNWKHVNCD---KLTT--IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 351 ------------------KL--KSCHEAVKNKTRYRVHPMLYEI---LSNEEALDDALMN 387
KL S E ++ + + E+ L NE AL ++++
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 388 SF 389
+
Sbjct: 452 HY 453
Score = 50.6 bits (120), Expect = 8e-07
Identities = 42/284 (14%), Positives = 88/284 (30%), Gaps = 99/284 (34%)
Query: 2 DIPTTVDRIKKIGLIKDRAGDESTLKNLA----QVLQNAPAIINEDLLSKKGVISENLLS 57
D T D K + K ES+L L + + + ++ I LLS
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-----IPTILLS 393
Query: 58 LL------QESTNLAEKLQIYKLI----KAVNLRIKTLRKIENLWMMENLVELDLSMNHI 107
L+ + + KL Y L+ K + I ++ +E +EN L H
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-YLELKVKLENEYAL-----HR 447
Query: 108 GVIENLDQLVCLEKLD-------------LGYNRIEQIQGLDTLVNLKVLNLKMNRIETI 154
++++ + + D +G++ +
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH--------------------------L 481
Query: 155 EGLDHLEKLELFNIAANRIQSLASLVYL------RRFKHLGRLNIERNPVCDKENVDGFA 208
+ ++H E++ LF +V+L ++ +H + +
Sbjct: 482 KNIEHPERMTLF-----------RMVFLDFRFLEQKIRHDSTAWNASGSILN-------- 522
Query: 209 IAMVPQLQCYNNHIILEDERRTALEQHMYDVRTETLKDLMVQRE 252
+ QL+ Y +I D + Y+ + D + + E
Sbjct: 523 --TLQQLKFYKPYICDNDPK--------YERLVNAILDFLPKIE 556
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 64.3 bits (157), Expect = 1e-11
Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 15/129 (11%)
Query: 96 NLVELDLSMNHIGVI--ENLDQLVCLEKLDLGYNRIEQIQ----GLDTLVNLKVLNLKMN 149
L EL + N I + + L + ++LG N ++ + L + +
Sbjct: 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181
Query: 150 RIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGF 207
I TI L +L L N+I + + L+ +L +L + N + VD
Sbjct: 182 NITTIPQGLPPSLTELHLDG---NKITKVDAA-SLKGLNNLAKLGLSFNSI---SAVDNG 234
Query: 208 AIAMVPQLQ 216
++A P L+
Sbjct: 235 SLANTPHLR 243
Score = 60.0 bits (146), Expect = 3e-10
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 21/107 (19%)
Query: 94 MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI 151
++NL L L N I I LV LE+L L N+++++ L+ L + N I
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE-KMPKTLQELRVHENEI 133
Query: 152 ETI-----EGLDHLEKLELFNIAANRIQS----------LASLVYLR 183
+ GL+ + +EL N ++S + L Y+R
Sbjct: 134 TKVRKSVFNGLNQMIVVELGT---NPLKSSGIENGAFQGMKKLSYIR 177
Score = 57.7 bits (140), Expect = 2e-09
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 13/103 (12%)
Query: 95 ENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNR 150
+ LDL N I I++ L L L L N+I +I LV L+ L L N+
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 151 IETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRL 191
++ + L++L + N I + V F L ++
Sbjct: 112 LKELPEKMPKTLQELRVHE---NEITKVRKSV----FNGLNQM 147
Score = 55.8 bits (135), Expect = 7e-09
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 17/95 (17%)
Query: 94 MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQ-GLDTLVNLKVLNLKMNR 150
+ NL +L LS N I ++N L L +L L N++ ++ GL ++V+ L N
Sbjct: 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 274
Query: 151 IETIE-----------GLDHLEKLELFNIAANRIQ 174
I I + LF+ N +Q
Sbjct: 275 ISAIGSNDFCPPGYNTKKASYSGVSLFS---NPVQ 306
Score = 51.5 bits (124), Expect = 2e-07
Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 21/106 (19%)
Query: 85 LRKIEN--LWMMENLVELDLSMNHIGVI-ENLDQLVCLEKLDLGYNRIEQIQG------- 134
+ ++N L +L EL L+ N + + L ++ + L N I I
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 287
Query: 135 -LDTLVNLKVLNLKMNRIETIE-------GLDHLEKLELFNIAANR 172
+ ++L N ++ E + ++L N +
Sbjct: 288 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN---YK 330
Score = 49.6 bits (119), Expect = 7e-07
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 14/85 (16%)
Query: 119 LEKLDLGYNRIEQIQ--GLDTLVNLKVLNLKMNRIETIE-----GLDHLEKLELFNIAAN 171
LDL N+I +I+ L NL L L N+I I L LE+L L N
Sbjct: 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK---N 110
Query: 172 RIQSLASLVYLRRFKHLGRLNIERN 196
+++ L + K L L + N
Sbjct: 111 QLKELPEKM----PKTLQELRVHEN 131
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 64.4 bits (157), Expect = 1e-11
Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 12/111 (10%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
+ LDLS N I I N L + V L+ L L N I I+ +L +L+ L+L N +
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 152 ETI-----EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
+ + L L L L N ++L L L +
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLG---NPYKTLGETSLFSHLTKLQILRVGNMD 160
Score = 55.9 bits (135), Expect = 8e-09
Identities = 24/159 (15%), Positives = 52/159 (32%), Gaps = 21/159 (13%)
Query: 81 RIKTLRKIENLWMMENLVELDLSMNH-IGVIEN--LDQLVCLEKLDLGYNRIEQIQG--L 135
KTL + + L L + I+ L LE+L++ + ++ + L
Sbjct: 135 PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194
Query: 136 DTLVNLKVLNLKMNRIETIE-----GLDHLEKLELFN--IAANRIQSLASLVY--LRRFK 186
++ N+ L L M + + +E LEL + + L++ L +
Sbjct: 195 KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254
Query: 187 HLGRLNIERNPVCDKENVDGFAIAMVPQLQC---YNNHI 222
+ I + + + + L N +
Sbjct: 255 TFRNVKITDESLFQVMKL----LNQISGLLELEFSRNQL 289
Score = 54.7 bits (132), Expect = 2e-08
Identities = 18/134 (13%), Positives = 41/134 (30%), Gaps = 33/134 (24%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG------------------- 134
+L LDLS N++ + + L L L+L N + +
Sbjct: 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160
Query: 135 ---------LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLR 183
L L+ L + + +++ E L ++ + + + L + +
Sbjct: 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIF-VD 219
Query: 184 RFKHLGRLNIERNP 197
+ L +
Sbjct: 220 VTSSVECLELRDTD 233
Score = 54.0 bits (130), Expect = 3e-08
Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 119 LEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE-----GLDHLEKLELFNIAAN 171
++ LDL NRI I L VNL+ L L N I TIE L LE L+L N
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY---N 110
Query: 172 RIQSLASLVYLRRFKHLGRLNIERNPV 198
+ +L+S + L LN+ NP
Sbjct: 111 YLSNLSSSW-FKPLSSLTFLNLLGNPY 136
Score = 47.8 bits (114), Expect = 4e-06
Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 14/120 (11%)
Query: 94 MENLVELDLSMNHI----------GVIENLDQLVCLEKLDLGYNRIEQIQGL-DTLVNLK 142
++ L+L + G +L + + + + Q+ L + + L
Sbjct: 221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLL 280
Query: 143 VLNLKMNRIETIEG--LDHLEKLELFNIAANRIQ-SLASLVYLRRFKHLGRLNIERNPVC 199
L N+++++ D L L+ + N S + YL R+ + + + C
Sbjct: 281 ELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKC 340
Score = 34.7 bits (80), Expect = 0.047
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 139 VNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNI 193
+K L+L NRI I L L+ + +N I ++ F LG L
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS----FSSLGSLEH 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 62.4 bits (152), Expect = 2e-11
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
L +DLS N I + L L L L N+I ++ + L +L++L L N+I
Sbjct: 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI 116
Query: 152 ETI-EGL-DHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP-VCD 200
+ L L L ++ N++Q++A + + +++ +NP +CD
Sbjct: 117 NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT-FSPLRAIQTMHLAQNPFICD 167
Score = 58.1 bits (141), Expect = 5e-10
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 10/104 (9%)
Query: 95 ENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNR 150
E + E+ L N I VI L ++DL N+I ++ L +L L L N+
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 151 IETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLN 192
I + + L L+L + AN+I L F+ L LN
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDA----FQDLHNLN 131
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 64.4 bits (157), Expect = 3e-11
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
Query: 95 ENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNR 150
+ LDLS N I I + L L+ L L +RI I+G +L +L+ L+L N
Sbjct: 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85
Query: 151 IETI--EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
+ ++ L L+ N+ N Q+L +L L I
Sbjct: 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133
Score = 61.3 bits (149), Expect = 2e-10
Identities = 29/111 (26%), Positives = 41/111 (36%), Gaps = 13/111 (11%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQI--QGLDTLVNLKVLNLKMNRI 151
NL L L + I IE L LE LDL N + + L +LK LNL N
Sbjct: 51 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110
Query: 152 ETIE------GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
+T+ L +L+ L + N + + L L I+
Sbjct: 111 QTLGVTSLFPNLTNLQTLRIGN--VETFSEIRRID-FAGLTSLNELEIKAL 158
Score = 58.6 bits (142), Expect = 2e-09
Identities = 30/153 (19%), Positives = 63/153 (41%), Gaps = 12/153 (7%)
Query: 51 ISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVI 110
IS N + +S EK++ +NL +R ++ + L LD+S N++
Sbjct: 394 ISRNTFHPMPDSCQWPEKMRF------LNLSSTGIRVVKTCIP-QTLEVLDVSNNNLDSF 446
Query: 111 ENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNI 168
L L++L + N+++ + L V+ + N+++++ D L L+ +
Sbjct: 447 SL--FLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL 504
Query: 169 AANRIQ-SLASLVYLRRFKHLGRLNIERNPVCD 200
N S + YL R+ + + + C
Sbjct: 505 HTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCS 537
Score = 57.8 bits (140), Expect = 3e-09
Identities = 21/133 (15%), Positives = 45/133 (33%), Gaps = 30/133 (22%)
Query: 94 MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG-----LDTLVNLKVLNL 146
+E + + + + + ++ L LE LDL N + + +L+ L L
Sbjct: 309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368
Query: 147 KMNRIETIEG----LDHLEKLELFNIAANRIQS-------LASLVYLR------------ 183
N + +++ L L+ L +I+ N + +L
Sbjct: 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTC 428
Query: 184 RFKHLGRLNIERN 196
+ L L++ N
Sbjct: 429 IPQTLEVLDVSNN 441
Score = 56.7 bits (137), Expect = 6e-09
Identities = 16/112 (14%), Positives = 35/112 (31%), Gaps = 9/112 (8%)
Query: 94 MENLVELDLSMNHIGVIEN---LDQLVCLEKLDLG-YNRIEQIQG--LDTLVNLKVLNLK 147
+ +L L+L N + L L+ L +G +I+ L +L L +K
Sbjct: 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156
Query: 148 MNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
+ + L + + + + L + + L +
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF-ADILSSVRYLELRDTN 207
Score = 50.9 bits (122), Expect = 5e-07
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 119 LEKLDLGYNRIEQIQ--GLDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQ 174
++ LDL +N+I I L NL+VL LK +RI TIEG L LE +++ N +
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 175 SLASLVYLRRFKHLGRLNIERNP 197
SL+S L LN+ NP
Sbjct: 88 SLSSSW-FGPLSSLKYLNLMGNP 109
Score = 49.0 bits (117), Expect = 2e-06
Identities = 16/151 (10%), Positives = 51/151 (33%), Gaps = 10/151 (6%)
Query: 51 ISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVI 110
+ N L ++ + L +R+ + + +L EL++ +
Sbjct: 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR-IDFAGLTSLNELEIKALSLRNY 163
Query: 111 EN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE-----GLDHLE 161
++ L + + L L + + D L +++ L L+ + + +
Sbjct: 164 QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS 223
Query: 162 KLELFNIAANRIQSLASLVYLRRFKHLGRLN 192
++ + + + L+ +++ L+
Sbjct: 224 PMKKLAFRGSVLTDESFNELLKLLRYILELS 254
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 62.7 bits (153), Expect = 3e-11
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
L LDLS I IE+ L L L L N I+ + L +L+ L +
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 152 ETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
++E + HL+ L+ N+A N IQS Y +L L++ N
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 60.8 bits (148), Expect = 1e-10
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 16/105 (15%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
+ LDLS N + + + L+ LDL I+ I+ +L +L L L N I
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 152 ETI-----EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRL 191
+++ GL L+KL + SL + HL L
Sbjct: 89 QSLALGAFSGLSSLQKLVAVE---TNLASLENFP----IGHLKTL 126
Score = 58.8 bits (143), Expect = 6e-10
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 17/106 (16%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
+L L L+ N I + L L+KL + ++ + L LK LN+ N I
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 152 ETIE------GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRL 191
++ + L +LE L+L + N+IQS+ + L ++
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSS---NKIQSIYCTD----LRVLHQM 175
Score = 55.7 bits (135), Expect = 6e-09
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 17/114 (14%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG---LDTLVNLKVLNLKMNR 150
+L +L ++ +EN + L L++L++ +N I+ + L NL+ L+L N+
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 151 IETIEG--LDHLEKLELFN----IAANRIQSLASLVYLRRFK--HLGRLNIERN 196
I++I L L ++ L N ++ N + + FK L L ++ N
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA----FKEIRLKELALDTN 210
Score = 48.8 bits (117), Expect = 1e-06
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 10/118 (8%)
Query: 96 NLVELDLSMNHI-----GVIENLDQLVCLE-KLDLGYNRIEQIQ-GLDTLVNLKVLNLKM 148
NL LDLS N I + L Q+ L LDL N + IQ G + LK L L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDT 209
Query: 149 NRIETIEG--LDHLEKLELFNIAANRIQ-SLASLVYLRRFKHLGRLNIERNPVCDKEN 203
N+++++ D L L+ + N S + YL R+ + + + C
Sbjct: 210 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG 267
Score = 34.6 bits (80), Expect = 0.051
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 139 VNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
+ K L+L N + + +L++ +++ IQ++ Y + HL L + N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILTGN 86
Query: 197 PV 198
P+
Sbjct: 87 PI 88
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 63.9 bits (156), Expect = 4e-11
Identities = 25/150 (16%), Positives = 50/150 (33%), Gaps = 6/150 (4%)
Query: 45 LSKKGVISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSM 104
L E L + + S + + I + N+ + L+
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDD-IVKFHCLANVSAMSLAG 294
Query: 105 NHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLE 164
I +E++ + + L + +++Q LD L LK L L MN+ L L
Sbjct: 295 VSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLD-LPFLKSLTLTMNKGSISFKKVALPSLS 353
Query: 165 LFNIAANRIQSLASLVYLRRFKHLGRLNIE 194
+++ N + + LG ++
Sbjct: 354 YLDLSRNALSFSGCCS----YSDLGTNSLR 379
Score = 62.0 bits (151), Expect = 1e-10
Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 5/108 (4%)
Query: 94 MENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQ----GLDTLVNLKVLNLKMN 149
+ L L L+MN + L L LDL N + +L+ L+L N
Sbjct: 327 LPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386
Query: 150 RIETIEG-LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
+ LE+L+ + + ++ + + L L+I
Sbjct: 387 GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434
Score = 60.8 bits (148), Expect = 4e-10
Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 11/153 (7%)
Query: 51 ISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVI 110
+S N ++ + E+LQ + +K + + +E L+ LD+S + +
Sbjct: 383 LSFNGAIIMSANFMGLEELQHLDF---QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439
Query: 111 EN--LDQLVCLEKLDLGYNRIEQI---QGLDTLVNLKVLNLKMNRIETIEG--LDHLEKL 163
+ L L L + N + NL L+L ++E I D L +L
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499
Query: 164 ELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
+L N++ N + L S + L L+ N
Sbjct: 500 QLLNMSHNNLLFLDSSH-YNQLYSLSTLDCSFN 531
Score = 50.4 bits (121), Expect = 6e-07
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQ---GLDTLVNLKVLNLKMNR 150
+L L + +E+ + QL+ L+KL++ +N I + L NL ++L N
Sbjct: 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164
Query: 151 IETI--EGLDHLEKLELF----NIAANRIQSLAS 178
I+TI L L + +++ N I +
Sbjct: 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 63.4 bits (154), Expect = 6e-11
Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 9/125 (7%)
Query: 81 RIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQI--QGLDTL 138
++ +L M L LD N + +E V L L L YN+IE+I
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFT 618
Query: 139 VNLKVLNLKMNRIETI---EGLDHLEKLELFNIAANRIQSL----ASLVYLRRFKHLGRL 191
++ L N+++ I + + + + N+I S + + + + +
Sbjct: 619 DQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678
Query: 192 NIERN 196
+ N
Sbjct: 679 TLSYN 683
Score = 62.6 bits (152), Expect = 1e-10
Identities = 22/134 (16%), Positives = 49/134 (36%), Gaps = 18/134 (13%)
Query: 81 RIKTLRKIENLWMMENLVELDLSMNHIGVIE-------NLDQLVCLEKLDLGYNRIEQI- 132
++K + I N + + +D S N IG + + + + L YN I++
Sbjct: 630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP 689
Query: 133 -QGLDTLVNLKVLNLKMNRIETI---------EGLDHLEKLELFNIAANRIQSLASLVYL 182
+ T + + L N + +I + L ++ N++ SL+
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749
Query: 183 RRFKHLGRLNIERN 196
+L +++ N
Sbjct: 750 TTLPYLSNMDVSYN 763
Score = 58.7 bits (142), Expect = 2e-09
Identities = 24/162 (14%), Positives = 55/162 (33%), Gaps = 27/162 (16%)
Query: 51 ISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLS-MNHIGV 109
+ + + + + + Y NL ++L +++L ++
Sbjct: 455 FANSPFTYDNIAVDWEDANSDY-----AKQYENEELSWSNL---KDLTDVELYNCPNMTQ 506
Query: 110 I-ENLDQLVCLEKLDLGYNRIEQI-----------QGLDTLVNLKVLNLKMNRIETI--- 154
+ + L L L+ L++ NR DT +++ + N +E
Sbjct: 507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566
Query: 155 EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
L + KL L + N+++ L + L L ++ N
Sbjct: 567 ASLQKMVKLGLLDCVHNKVRHLEAFGTN---VKLTDLKLDYN 605
Score = 43.7 bits (103), Expect = 9e-05
Identities = 25/203 (12%), Positives = 53/203 (26%), Gaps = 42/203 (20%)
Query: 33 LQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLW 92
+ + ++ L+ + + Q + +L + + +
Sbjct: 359 ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR---LNLSDLLQDAINRNPEMK 415
Query: 93 MMENLVELDLSMNHIGVIEN--------LDQLVCLEKLDLGYNRIEQI------------ 132
++ + L IG + N + +L L+ + +
Sbjct: 416 PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD 475
Query: 133 ---------QGLDTLVNLKVLNLKMNRIETI--EGLDHLEKLELFNIAANRIQSLASLVY 181
L +L + L T + L L +L+ NIA NR S A L
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535
Query: 182 --------LRRFKHLGRLNIERN 196
+ + N
Sbjct: 536 DWTRLADDEDTGPKIQIFYMGYN 558
Score = 42.9 bits (101), Expect = 2e-04
Identities = 11/98 (11%), Positives = 30/98 (30%), Gaps = 11/98 (11%)
Query: 89 ENLWMMENLVELDLSMNHI-------GVI-ENLDQLVCLEKLDLGYNRIEQIQGLDTLVN 140
L + + L +L +G N I ++
Sbjct: 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVD-EKLTPQ 828
Query: 141 LKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSL 176
L +L++ N +I+ + + ++ + ++ Q +
Sbjct: 829 LYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866
Score = 39.5 bits (92), Expect = 0.002
Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Query: 99 ELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQ--GLDTLVNLKVLNLKMNRIETIEG 156
ELD+ + GV +LD + L L + + L LKVL+ +
Sbjct: 307 ELDMWGDQPGV--DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR 364
Query: 157 LDHLEKL--ELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
L E+L ++ +RI+ ++L + L ++ ++
Sbjct: 365 LFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406
Score = 37.2 bits (86), Expect = 0.010
Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 4/105 (3%)
Query: 96 NLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKM--NRIET 153
+ + + + + L+ L+ ++ I+ + ++LK + NRI
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD-SRISLKDTQIGNLTNRITF 439
Query: 154 I-EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
I + + L KL++ A + V E
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE 484
Score = 31.8 bits (72), Expect = 0.46
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 92 WMMENLVELDLSMNHIGVIENLDQLVCLEK--LDLGYNRIEQIQGLDTL 138
+ L LD++ N I+ +E L Y++ + I+G D L
Sbjct: 824 KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDAL 872
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 62.8 bits (153), Expect = 6e-11
Identities = 32/168 (19%), Positives = 61/168 (36%), Gaps = 17/168 (10%)
Query: 94 MENLVELDLSMNHIGVI---ENLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKM 148
+++L L + G++ L L L L YN+ Q++ + L NL+VL L
Sbjct: 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQ 112
Query: 149 NRIETI-------EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPV-CD 200
++ + L LE L L + N I+ + + + L++ N V
Sbjct: 113 CNLDGAVLSGNFFKPLTSLEMLVLRD---NNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169
Query: 201 KENV-DGFAIAMVPQLQCYNNHIILEDERRTALEQHMYDVRTETLKDL 247
E F L+ + + +E E+ + ++ L
Sbjct: 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL 217
Score = 59.8 bits (145), Expect = 6e-10
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
+L++L+LS N +G I++ + L LE LDL YN I + L NLK L L N++
Sbjct: 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383
Query: 152 ETIEG--LDHLEKLELFNIAANRIQ-SLASLVYLRRFKHLGRLNIERNPVCDKEN 203
+++ D L L+ + N S + YL R+ + + + C
Sbjct: 384 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG 438
Score = 49.7 bits (119), Expect = 9e-07
Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 25/123 (20%)
Query: 84 TLRKIENLWMMEN-LVELDLSMNHIGVIENLDQLVC-------LEKLDLGYNRIEQIQG- 134
KI++L + + + ++ D ++ DL ++I +
Sbjct: 237 AGTKIQSLILSNSYNMGSSFGHT---NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS 293
Query: 135 -LDTLVNLKVLNLKMNRIETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
+L+ L L N I I+ GL HL KL L N + S+ S + F++L
Sbjct: 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ---NFLGSIDSRM----FENL 346
Query: 189 GRL 191
+L
Sbjct: 347 DKL 349
Score = 42.4 bits (100), Expect = 2e-04
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Query: 119 LEKLDLGYNRIEQIQ--GLDTLVNLKVLNLKMNRIETI---EGLDHLEKLELFNIAANRI 173
+ +DL N I ++ L +L+ L ++ + L L + + N+
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 174 QSLASLVYLRRFKHLGRLNIERN 196
L + +L L + +
Sbjct: 92 LQLETGA-FNGLANLEVLTLTQC 113
Score = 34.0 bits (78), Expect = 0.089
Identities = 23/154 (14%), Positives = 40/154 (25%), Gaps = 54/154 (35%)
Query: 96 NLVELDLSMNHIGVIE----------NLDQLVCLEKLDLGYNRIE--------------- 130
+ L LS + + N + + LDL N +
Sbjct: 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240
Query: 131 -------------------QIQGLDTLV-------NLKVLNLKMNRIETIEG--LDHLEK 162
+ D +K +L ++I + H
Sbjct: 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD 300
Query: 163 LELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
LE +A N I + HL +LN+ +N
Sbjct: 301 LEQLTLAQNEINKIDDNA-FWGLTHLLKLNLSQN 333
Score = 30.9 bits (70), Expect = 0.86
Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 139 VNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
++ ++L +N I + L+ L+ + + R L L ++ N
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 62.7 bits (153), Expect = 8e-11
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 12/117 (10%)
Query: 94 MENLVELDLSMNHI-----GVIENLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNL 146
+ L L+L NH +L L LE L L + + I +L + ++L
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507
Query: 147 KMNRIETI--EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP-VCD 200
NR+ + E L HL+ + L N+A+N I + + L +N+ +NP C
Sbjct: 508 SHNRLTSSSIEALSHLKGIYL-NLASNHISIILPSL-LPILSQQRTINLRQNPLDCT 562
Score = 62.3 bits (152), Expect = 1e-10
Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 9/112 (8%)
Query: 94 MENLVELDLSMNHIGVIEN---LDQLVCLEKLDLGYNRIEQIQ----GLDTLVNLKVLNL 146
+L L + N + L+ L L +LDL ++ IE L L +L+ LNL
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383
Query: 147 KMNRIETI--EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
N ++ E +LEL ++A R++ + + L LN+ +
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435
Score = 62.0 bits (151), Expect = 1e-10
Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 7/108 (6%)
Query: 95 ENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQ--GLDTLVNLKVLNLKMNR 150
+ L+ S N + I+N +L+ L LDL +I I + L L L N
Sbjct: 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92
Query: 151 IETI--EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
+ + L + L+ I S+ + L K L L + N
Sbjct: 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIP-LHNQKTLESLYLGSN 139
Score = 59.3 bits (144), Expect = 1e-09
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 10/115 (8%)
Query: 91 LWMMENLVELDLSMNHIGVIE----NLDQLVCLEKLDLGYNRIEQIQ--GLDTLVNLKVL 144
L +ENL ELDLS + I + L L L+ L+L YN ++ L++L
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405
Query: 145 NLKMNRIETIEG---LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
+L R++ + +L L++ N++ + + + + L LN++ N
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL-FDGLPALQHLNLQGN 459
Score = 58.9 bits (143), Expect = 1e-09
Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 8/122 (6%)
Query: 81 RIKTLRKIENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQ--GLD 136
+ T++ + NL LDL+ I I L+ L L N + + L
Sbjct: 44 VLPTIQN-TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS 102
Query: 137 TLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIE 194
LK L I +I+ L + + LE + +N I S+ + L L+ +
Sbjct: 103 GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQ 161
Query: 195 RN 196
N
Sbjct: 162 NN 163
Score = 58.1 bits (141), Expect = 2e-09
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 94 MENLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNR 150
L ELDL+ H+ + + L L L+KL L N+ E + +L L++K N
Sbjct: 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336
Query: 151 IETIEG---LDHLEKLELFNIAANRIQSL-ASLVYLRRFKHLGRLNIERN 196
G L++LE L +++ + I++ + LR HL LN+ N
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386
Score = 56.6 bits (137), Expect = 8e-09
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 9/129 (6%)
Query: 79 NLRIKTLRKIENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLD 136
+ ++K +L + L L LS + I+ L + +DL +NR+ +
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI-E 518
Query: 137 TLVNLK--VLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRF--KHLGR 190
L +LK LNL N I I L L + N+ N + S +Y + +++ +
Sbjct: 519 ALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQK 578
Query: 191 LNIERNPVC 199
L + +C
Sbjct: 579 LEDTEDTLC 587
Score = 56.2 bits (136), Expect = 1e-08
Identities = 27/112 (24%), Positives = 36/112 (32%), Gaps = 12/112 (10%)
Query: 94 MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN 149
+ L L I I+ L LE L LG N I I+ LKVL+ + N
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163
Query: 150 RIETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
I + L L L N+ N I + + LN
Sbjct: 164 AIHYLSKEDMSSLQQATNLSL-NLNGNDIAGIEPGAF--DSAVFQSLNFGGT 212
Score = 45.4 bits (108), Expect = 2e-05
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 12/111 (10%)
Query: 96 NLVELDLSMNHIGVIE-NLDQLVCLEKLDLGYNRI--EQIQGLD--TLVNLKVLNLKMNR 150
+ L+L+ N I IE + L+ G + +GL T+ +L + +
Sbjct: 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239
Query: 151 IETI-----EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
E I EGL + +E N+ + +++S F L L++
Sbjct: 240 DEDISPAVFEGLCEM-SVESINLQKHYFFNISSNT-FHCFSGLQELDLTAT 288
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 61.3 bits (149), Expect = 1e-10
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 79 NLRIKTLRKIENLWMMENLVELDLSMNHIGVIENL-DQLVCLEKLDLGYNRIEQIQG--L 135
NL L K++ + L LDLS N + + L L L LD+ +NR+ + L
Sbjct: 61 NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 136 DTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRL 191
L L+ L LK N ++T+ L KLE ++A N + L + + L L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL----LNGLENL 174
Score = 60.9 bits (148), Expect = 1e-10
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 10/107 (9%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIET 153
+ L LS N + L L +L+L + ++Q TL L L+L N++++
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS 91
Query: 154 I----EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
+ + L L L++ NR+ SL LR L L ++ N
Sbjct: 92 LPLLGQTLPALTVLDVSF---NRLTSLPLGA-LRGLGELQELYLKGN 134
Score = 60.1 bits (146), Expect = 3e-10
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
L LD+S N + + L L L++L L N ++ + L L+ L+L N +
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Query: 152 ETI-EGL-DHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP-VCD 200
+ GL + LE L+ + N + ++ + L + NP +C+
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS--HLLPFAFLHGNPWLCN 210
Score = 32.4 bits (74), Expect = 0.24
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 119 LEKLDLGYNRIEQI-QGLDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQS 175
+++ + + L + +L+L N + T L +L N+ +
Sbjct: 12 HLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK 69
Query: 176 LASLVYLRRFKHLGRLNIERN 196
L L LG L++ N
Sbjct: 70 LQVDGTL---PVLGTLDLSHN 87
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 61.7 bits (150), Expect = 2e-10
Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 28/169 (16%)
Query: 51 ISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIG 108
+S + L + K +K +NL + KI + + ++NL L+LS N +G
Sbjct: 273 LSHGFVFSLNSRV-----FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327
Query: 109 VIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIEGLDHLEKLE 164
+ + L + +DL N I IQ L L+ L+L+ N + TI + + +
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF 387
Query: 165 L-----------------FNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
L +++ NR+++L L +L R HL L + +N
Sbjct: 388 LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN 436
Score = 61.7 bits (150), Expect = 2e-10
Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 15/131 (11%)
Query: 79 NLRIKTLRKIENLWMMENLVELDLSMNHIGVIEN---LDQLVCLEKLDLGYNRIEQIQG- 134
R++ L + L + +L L L+ N + LE+L LG N ++
Sbjct: 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET 469
Query: 135 ------LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFK 186
+ L +L+VL L N + ++ HL L ++ +NR+ L+
Sbjct: 470 ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL---PA 526
Query: 187 HLGRLNIERNP 197
+L L+I RN
Sbjct: 527 NLEILDISRNQ 537
Score = 57.5 bits (139), Expect = 4e-09
Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 7/137 (5%)
Query: 94 MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI 151
+ +L L L+ N++ + L L L L NR+ + D NL++L++ N++
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQL 538
Query: 152 ETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPV----CDKENVDGF 207
D L + +I N+ L + + + I P ++ G
Sbjct: 539 LAPN-PDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGV 597
Query: 208 AIAMVPQLQCYNNHIIL 224
++ + C ++
Sbjct: 598 SLFSLSTEGCDEEEVLK 614
Score = 57.5 bits (139), Expect = 5e-09
Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 94 MENLVELDLSMNHI--GVIEN--LDQLVCLEKLDLGYNRIEQIQ---GLDTLVNLKVLNL 146
+ +L EL L + V+++ L L +LDL N+I + L +LK ++
Sbjct: 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155
Query: 147 KMNRIETIEGLD----HLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
N+I + + + L F++AAN + S S+ + + + +E
Sbjct: 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209
Score = 55.2 bits (133), Expect = 2e-08
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 8/109 (7%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQI---QGLDTLVNLKVLNLKMNR 150
L LS N+I + L L+ L+LG + L NL++L+L ++
Sbjct: 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84
Query: 151 IETIEG--LDHLEKLELFNIAANRIQSLA-SLVYLRRFKHLGRLNIERN 196
I + L L + + Y R K L RL++ +N
Sbjct: 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133
Score = 44.0 bits (104), Expect = 8e-05
Identities = 24/128 (18%), Positives = 39/128 (30%), Gaps = 29/128 (22%)
Query: 96 NLVELDLSMNHIGVIENLDQLVC--------LEKLDLGYNRIE--------------QIQ 133
L L+ N + ++D C LE LD+ N Q
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234
Query: 134 GLDTLVNLKVLNLKMNRIETI-----EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
L ++ + I+ GL + +++ + SL S V K L
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS-VRHLDLSHGFVFSLNSRV-FETLKDL 292
Query: 189 GRLNIERN 196
LN+ N
Sbjct: 293 KVLNLAYN 300
Score = 36.7 bits (85), Expect = 0.015
Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 4/80 (5%)
Query: 120 EKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLA 177
+ + Q+ L + L L N I T+ LE+L+L + +
Sbjct: 7 RIAFYRFCNLTQV--PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64
Query: 178 SLVYLRRFKHLGRLNIERNP 197
R +L L++ +
Sbjct: 65 DKEAFRNLPNLRILDLGSSK 84
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 60.8 bits (148), Expect = 3e-10
Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 22/148 (14%)
Query: 51 ISENLLSLLQES-TNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGV 109
+ N L L + +L E + N +++ L +++NL L + N +
Sbjct: 160 VDNNSLKKLPDLPPSL-EFIAAG------NNQLEELPELQNL---PFLTAIYADNNSLKK 209
Query: 110 IENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETI-EGLDHLEKLELFNI 168
+ D + LE + G N +E++ L L L + N ++T+ + LE L + +
Sbjct: 210 LP--DLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRD- 266
Query: 169 AANRIQSLASLVYLRRFKHLGRLNIERN 196
N + L L + L L++ N
Sbjct: 267 --NYLTDLPEL-----PQSLTFLDVSEN 287
Score = 58.5 bits (142), Expect = 2e-09
Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 95 ENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETI 154
L L +S N + + L L+ +D+ N ++++ D +L+ + N++E +
Sbjct: 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKL--PDLPPSLEFIAAGNNQLEEL 188
Query: 155 EGLDHLEKLELFNIAANRIQSL 176
L +L L N ++ L
Sbjct: 189 PELQNLPFLTAIYADNNSLKKL 210
Score = 53.5 bits (129), Expect = 6e-08
Identities = 24/143 (16%), Positives = 53/143 (37%), Gaps = 12/143 (8%)
Query: 56 LSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQ 115
+ E N + + R + ++ + + EL+L+ + + L
Sbjct: 33 VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC-LDRQAHELELNNLGLSSLPEL-- 89
Query: 116 LVCLEKLDLGYNRIEQI-QGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQ 174
LE L N + ++ + +L +L V N + + + LE L + N N+++
Sbjct: 90 PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL--PPLLEYLGVSN---NQLE 144
Query: 175 SLASLVYLRRFKHLGRLNIERNP 197
L L L ++++ N
Sbjct: 145 KLPELQNS---SFLKIIDVDNNS 164
Score = 48.8 bits (117), Expect = 2e-06
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 94 MENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIET 153
+L EL++S N + + L LE+L +N + ++ + NLK L+++ N +
Sbjct: 316 PPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEVP--ELPQNLKQLHVEYNPLRE 371
Query: 154 I-EGLDHLEKLELFNIAANRIQSLASLVYL 182
+ + +E L + + A + +L L
Sbjct: 372 FPDIPESVEDLRMNSHLAEVPELPQNLKQL 401
Score = 47.7 bits (114), Expect = 4e-06
Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 22/110 (20%)
Query: 85 LRKIENLWMMENLVELDLSMNHIGVI----ENLDQLVC--------------LEKLDLGY 126
L ++ L + L + N + + +L+ L L LD+
Sbjct: 227 LEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSE 286
Query: 127 NRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSL 176
N + L NL LN N I ++ L LE N++ N++ L
Sbjct: 287 NIFSGLSEL--PPNLYYLNASSNEIRSLCDL--PPSLEELNVSNNKLIEL 332
Score = 41.1 bits (97), Expect = 4e-04
Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 23/104 (22%)
Query: 94 MENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGL-----------------D 136
L L S NH+ + L L++L + YN + + + +
Sbjct: 336 PPRLERLIASFNHLAEVPEL--PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393
Query: 137 TLVNLKVLNLKMNRIETI-EGLDHLEKLELFNIAANRIQSLASL 179
NLK L+++ N + + + +E L + + R+
Sbjct: 394 LPQNLKQLHVETNPLREFPDIPESVEDLRMNS---ERVVDPYEF 434
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 60.8 bits (148), Expect = 3e-10
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 6/114 (5%)
Query: 89 ENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQI--QGLDTLVNLKVL 144
+ + L LDLS I IE+ L L L L N I+ + L +L+ L
Sbjct: 46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105
Query: 145 NLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
+ ++E + HL+ L+ N+A N IQS Y +L L++ N
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 60.0 bits (146), Expect = 6e-10
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 7/107 (6%)
Query: 96 NLVELDLSMNHIGVI--ENLDQLVCLEKLDLGYNRIEQI--QGLDTLVNLKVLNLKMNRI 151
+ LDLS N + + + L+ LDL I+ I +L +L L L N I
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 152 ETI--EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
+++ L L+ + SL + + K L LN+ N
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENF-PIGHLKTLKELNVAHN 134
Score = 59.7 bits (145), Expect = 9e-10
Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 6/114 (5%)
Query: 89 ENLWMMENLVELDLSMNHI-GVIENLDQLVCLEKLDLGYNRIEQIQGLDT---LVNLKVL 144
++ + +L LDLS N + + N L LE LD ++ ++Q+ L NL L
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426
Query: 145 NLKMNRIETI--EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
++ + L LE+ +A N Q ++L L++ +
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Score = 59.3 bits (144), Expect = 1e-09
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 11/153 (7%)
Query: 51 ISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVI 110
+S N + + + E+L+ + +K + + + NL+ LD+S H V
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDF---QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436
Query: 111 EN--LDQLVCLEKLDLGYNRIEQI---QGLDTLVNLKVLNLKMNRIETI--EGLDHLEKL 163
N + L LE L + N ++ L NL L+L ++E + + L L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 164 ELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
++ N++ N SL + + L L+ N
Sbjct: 497 QVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLN 528
Score = 53.1 bits (128), Expect = 9e-08
Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 7/124 (5%)
Query: 79 NLRIKTLRKIENLWM-----MENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQ 133
R+ L + + + N+ L I +++ + L+L + Q
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320
Query: 134 GLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVY-LRRFKHLGRLN 192
L L +LK L N+ L LE +++ N + L L+
Sbjct: 321 TL-KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379
Query: 193 IERN 196
+ N
Sbjct: 380 LSFN 383
Score = 52.3 bits (126), Expect = 2e-07
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 89 ENLWMMENLVELDLSMNHI-GVIEN-LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVL 144
+ + NL LDLS + + + L L+ L++ +N + L +L+VL
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523
Query: 145 NLKMNRIETIEG--LDHLEK-LELFNIAANRIQ 174
+ +N I T + L H L N+ N
Sbjct: 524 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 47.7 bits (114), Expect = 5e-06
Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 21/120 (17%)
Query: 85 LRKIEN--LWMMENLVELDLSMNHIGVI---ENLDQLVCLEKLDLGYNRIEQI--QGLDT 137
L +EN + ++ L EL+++ N I E L LE LDL N+I+ I L
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171
Query: 138 LVNLKV----LNLKMNRIETIE----GLDHLEKLEL------FNIAANRIQSLASLVYLR 183
L + + L+L +N + I+ L KL L N+ IQ LA L R
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231
Score = 46.9 bits (112), Expect = 9e-06
Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 12/128 (9%)
Query: 81 RIKTLRKIENLWMMENLVELDLSMNHI-----GVIENLDQL-VCLEKLDLGYNRIEQIQ- 133
I++ + E + NL LDLS N I + L Q+ + LDL N + IQ
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194
Query: 134 GLDTLVNLKVLNLKMNRIETI---EGLDHLEKLELFNIAANRIQSLASLVYLRR--FKHL 188
G + L L L+ N + L LE+ + ++ +L + + L
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254
Query: 189 GRLNIERN 196
L IE
Sbjct: 255 CNLTIEEF 262
Score = 45.4 bits (108), Expect = 2e-05
Identities = 24/158 (15%), Positives = 51/158 (32%), Gaps = 19/158 (12%)
Query: 51 ISENLLS--LLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIG 108
+ N S +++ L++++L+ L K + +E L L + +
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS-ALEGLCNLTIEEFRLA 265
Query: 109 VIEN--------LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEG--LD 158
++ + L + L IE+++ + L L + L
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK 325
Query: 159 HLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
L++L + S L L L++ RN
Sbjct: 326 SLKRLTFTSNKGGNAFSEVDL------PSLEFLDLSRN 357
Score = 41.6 bits (98), Expect = 4e-04
Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 16/109 (14%)
Query: 96 NLVELDLSMNHIGVI---ENLDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLK 147
L +L L N + + L LE L L L L L ++
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260
Query: 148 MNRIETIEG--------LDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
R+ ++ + L + F++ + I+ + Y ++HL
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHL 309
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 59.3 bits (144), Expect = 3e-10
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 76 KAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGL 135
NL+ K++ + ++ ++ + + I ++ + L + L LG N++ I L
Sbjct: 22 IKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISAL 81
Query: 136 DTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNI 193
L NL L L N+++++ D L L+ + N++QSL V+ + +L LN+
Sbjct: 82 KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF-DKLTNLTYLNL 140
Query: 194 ERN 196
N
Sbjct: 141 AHN 143
Score = 46.5 bits (111), Expect = 6e-06
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 28/109 (25%)
Query: 96 NLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIE---------------------QIQG 134
N+ L L N + I L +L L L L N+++ Q+Q
Sbjct: 64 NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS 123
Query: 135 L-----DTLVNLKVLNLKMNRIETIE-GL-DHLEKLELFNIAANRIQSL 176
L D L NL LNL N+++++ G+ D L L +++ N++QSL
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172
Score = 40.0 bits (94), Expect = 7e-04
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 15/84 (17%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKM 148
NL L+L+ N + + D+L L +LDL YN Q+Q L D L LK L L
Sbjct: 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN---QLQSLPEGVFDKLTQLKDLRLYQ 190
Query: 149 NRIETI-EG-LDHLEKLE---LFN 167
N+++++ +G D L L+ L +
Sbjct: 191 NQLKSVPDGVFDRLTSLQYIWLHD 214
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 57.5 bits (140), Expect = 4e-10
Identities = 12/105 (11%), Positives = 29/105 (27%), Gaps = 7/105 (6%)
Query: 96 NLVELDLSMNHIGVI-ENLDQLVCLEKLDLGYNRIEQI-QGLDTLVNLKVLNLKMNRIET 153
+L + + + +L KL Y + ++ + L L +
Sbjct: 5 EKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTR 64
Query: 154 I-EGLDHLEKLELFNIAANRIQSL-ASLVYLRRFKHLGRLNIERN 196
+ + L + + L A++ L +L
Sbjct: 65 LKAAVGELPEKSKLQEIYQELTRLKAAVGEL---PEKSKLQEIYQ 106
Score = 56.7 bits (138), Expect = 7e-10
Identities = 9/86 (10%), Positives = 23/86 (26%), Gaps = 3/86 (3%)
Query: 94 MENLVELDLSMNHIGVI-ENLDQLVCLEKLDLGYNRIEQI-QGLDTLVNLKVLNLKMNRI 151
+ +L + + + +L KL Y + ++ + L L +
Sbjct: 72 LPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQEL 131
Query: 152 ETI-EGLDHLEKLELFNIAANRIQSL 176
+ + L + L
Sbjct: 132 TQLKAAVGELPDQSKQQQIYQELTDL 157
Score = 47.1 bits (113), Expect = 1e-06
Identities = 9/84 (10%), Positives = 22/84 (26%), Gaps = 4/84 (4%)
Query: 115 QLVCLEKLDLGYNRIEQI-QGLDTLVNLKVLNLKMNRIETI-EGLDHLEKLELFNIAANR 172
+L KL Y + ++ + L L + + + L +
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQE 61
Query: 173 IQSLASLVYLRRFKHLGRLNIERN 196
+ L + + +L
Sbjct: 62 LTRLKA--AVGELPEKSKLQEIYQ 83
Score = 46.7 bits (112), Expect = 2e-06
Identities = 7/68 (10%), Positives = 20/68 (29%), Gaps = 2/68 (2%)
Query: 89 ENLWMMENLVELDLSMNHIGVI-ENLDQLVCLEKLDLGYNRIEQI-QGLDTLVNLKVLNL 146
+ + +L + + + +L KL Y + Q+ + L +
Sbjct: 90 AAVGELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQLKAAVGELPDQSKQQQ 149
Query: 147 KMNRIETI 154
+ +
Sbjct: 150 IYQELTDL 157
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 58.8 bits (143), Expect = 8e-10
Identities = 21/155 (13%), Positives = 50/155 (32%), Gaps = 18/155 (11%)
Query: 53 ENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVI-E 111
+ S N + + + +KA ++ V L+L + +
Sbjct: 46 WHSAWRQANSNNPQIETRTGRALKATADLLEDAT-------QPGRVALELRSVPLPQFPD 98
Query: 112 NLDQLVCLEKLDLGYNRIEQI-QGLDTLVNLKVLNLKMNRIETI-EGLDHLEKLELFNIA 169
+L L+ + + + ++ + L+ L L N + + + L +L +I
Sbjct: 99 QAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158
Query: 170 ANR--------IQSLASLVYLRRFKHLGRLNIERN 196
A + S + + +L L +E
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT 193
Score = 51.1 bits (123), Expect = 3e-07
Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 10/115 (8%)
Query: 82 IKTLRKIENLWMMEN--LVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQI-QGLDTL 138
I +L ++ L + L EL + LV L+ L L + I + + L
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL 205
Query: 139 VNLKVLNLKMNRI----ETIEGLDHLEKLELFNIAANRIQSL-ASLVYLRRFKHL 188
NLK L ++ + + I L LE+L+L +++ K L
Sbjct: 206 QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC--TALRNYPPIFGGRAPLKRL 258
Score = 40.7 bits (96), Expect = 6e-04
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 10/98 (10%)
Query: 89 ENLWMMENLVELDLS-MNHIGVI-ENLDQLVCLEKLDL-GYNRIEQI-QGLDTLVNLKVL 144
+ + L ELDL + L++L L + + + + L L+ L
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282
Query: 145 NLKMNRI-----ETIEGLDHLEKLEL-FNIAANRIQSL 176
+L+ I L + + ++ A Q
Sbjct: 283 DLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320
Score = 29.5 bits (67), Expect = 1.7
Identities = 12/81 (14%), Positives = 23/81 (28%), Gaps = 4/81 (4%)
Query: 119 LEKLDL-GYNRIEQIQGLDTLVNLKVL-NLKMNRIETIEGLDHLEKLELFNIAANRIQSL 176
E L G + D L + N NR + + ++ +++
Sbjct: 14 RENLYFQGSTALRPY--HDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKAT 71
Query: 177 ASLVYLRRFKHLGRLNIERNP 197
A L+ L + P
Sbjct: 72 ADLLEDATQPGRVALELRSVP 92
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 57.7 bits (140), Expect = 2e-09
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 10/108 (9%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
+ LDL N I + L L L L N+I +I L L+ L + N +
Sbjct: 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114
Query: 152 ETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
I L +L + + NRI+ + V +++ + + NP
Sbjct: 115 VEIPPNLPSSLVELRIHD---NRIRKVPKGV-FSGLRNMNCIEMGGNP 158
Score = 57.3 bits (139), Expect = 2e-09
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 17/97 (17%)
Query: 94 MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQ-GLDTLVNLKVLNLKMNR 150
L L L N I +IEN L L L +L L N++ ++ GL L L+V+ L N
Sbjct: 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN 275
Query: 151 IETIE-----------GLDHLEKLELFNIAANRIQSL 176
I + + + LFN N +
Sbjct: 276 ITKVGVNDFCPVGFGVKRAYYNGISLFN---NPVPYW 309
Score = 56.9 bits (138), Expect = 4e-09
Identities = 31/155 (20%), Positives = 58/155 (37%), Gaps = 32/155 (20%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIET 153
+L L L N I I L L+KL + N + +I + +L L + NRI
Sbjct: 79 HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP-NLPSSLVELRIHDNRIRK 137
Query: 154 I-----EGLDHLEKLELFN--IAANRIQSLA----SLVYLR------------RFKHLGR 190
+ GL ++ +E+ + + + A L YLR + L
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNE 197
Query: 191 LNIERNPVCDKENVDGFAIAMVPQLQC---YNNHI 222
L+++ N + + ++ + +L +N I
Sbjct: 198 LHLDHNKI---QAIELEDLLRYSKLYRLGLGHNQI 229
Score = 52.3 bits (126), Expect = 9e-08
Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 13/112 (11%)
Query: 94 MENLVELDLSMNHI---GVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNR 150
+ N+ +++ N + G + L L + ++ I D L L+L N+
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK-DLPETLNELHLDHNK 204
Query: 151 IETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
I+ IE L +L L + N+I+ + + L L L+++ N
Sbjct: 205 IQAIELEDLLRYSKLYRLGLGH---NQIRMIENGS-LSFLPTLRELHLDNNK 252
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 57.8 bits (140), Expect = 2e-09
Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 9/128 (7%)
Query: 95 ENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETI 154
+ V M I + +QL L LD + I + G++ L L L N I T+
Sbjct: 21 ASEVAAAFEMQATDTI-SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL 79
Query: 155 EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQ 214
+ L L +N++ +L + L LN + N + +D ++
Sbjct: 80 D-LSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTNKL---TKLDVSQNPLLTY 131
Query: 215 LQCYNNHI 222
L C N +
Sbjct: 132 LNCARNTL 139
Score = 55.8 bits (135), Expect = 1e-08
Identities = 33/147 (22%), Positives = 53/147 (36%), Gaps = 18/147 (12%)
Query: 79 NLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTL 138
N I + IE L L +L + N+I + +L Q L L N++ + + L
Sbjct: 51 NSSITDMTGIEKL---TGLTKLICTSNNITTL-DLSQNTNLTYLACDSNKLTNLD-VTPL 105
Query: 139 VNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPV 198
L LN N++ ++ + L N A N + + + L L+ N
Sbjct: 106 TKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKK 160
Query: 199 CDKENVDGFAIAMVPQLQ---CYNNHI 222
K +V QL C N I
Sbjct: 161 ITKLDVTPQ-----TQLTTLDCSFNKI 182
Score = 53.5 bits (129), Expect = 5e-08
Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 6/107 (5%)
Query: 90 NLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMN 149
++ L L+ + N + I ++ L +LD N+ + L L+ N
Sbjct: 122 DVSQNPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN 180
Query: 150 RIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
+I ++ + + L N N I L L + L L+ N
Sbjct: 181 KITELD-VSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSN 222
Score = 53.2 bits (128), Expect = 8e-08
Identities = 25/146 (17%), Positives = 45/146 (30%), Gaps = 14/146 (9%)
Query: 51 ISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVI 110
S N L+ L ST KL + + + + +L L+
Sbjct: 240 CSVNPLTELDVSTL--SKLTT---LHCIQTDLLEI----DLTHNTQLIYFQAEGCRKIKE 290
Query: 111 ENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAA 170
++ L LD I ++ L L L L + ++ + H KL+ +
Sbjct: 291 LDVTHNTQLYLLDCQAAGITELD-LSQNPKLVYLYLNNTELTELD-VSHNTKLKSLSCVN 348
Query: 171 NRIQSLASLVYLRRFKHLGRLNIERN 196
IQ +S+ + L
Sbjct: 349 AHIQDFSSVGKI---PALNNNFEAEG 371
Score = 52.4 bits (126), Expect = 1e-07
Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 4/123 (3%)
Query: 56 LSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIE--NLWMMENLVELDLSMNHIGVIENL 113
L+ L ++ + + + + + RKI+ ++ L LD I + +L
Sbjct: 256 LTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL-DL 314
Query: 114 DQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRI 173
Q L L L + ++ + LK L+ I+ + + L A +
Sbjct: 315 SQNPKLVYLYLNNTELTELD-VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQT 373
Query: 174 QSL 176
++
Sbjct: 374 ITM 376
Score = 46.2 bits (110), Expect = 1e-05
Identities = 13/122 (10%), Positives = 40/122 (32%), Gaps = 4/122 (3%)
Query: 54 NLLSLLQESTNLAEKLQIYKL--IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIE 111
L+ E ++L + + ++ + + ++ +L LV L L+ + +
Sbjct: 276 QLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL-DLSQNPKLVYLYLNNTELTEL- 333
Query: 112 NLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAAN 171
++ L+ L I+ + + L + T+ ++ +
Sbjct: 334 DVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD 393
Query: 172 RI 173
+
Sbjct: 394 LL 395
Score = 34.7 bits (80), Expect = 0.047
Identities = 6/64 (9%), Positives = 19/64 (29%)
Query: 90 NLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMN 149
++ L L HI ++ ++ L + + N + + +
Sbjct: 334 DVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD 393
Query: 150 RIET 153
++
Sbjct: 394 LLDQ 397
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 56.8 bits (137), Expect = 3e-09
Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 8/130 (6%)
Query: 51 ISENLLSLLQESTNLAEKLQIYKLIKAV--NLRIKTLRKIEN--LWMMENLVELDLSMNH 106
+S+N + + L+ L N ++T + + L LDLS N
Sbjct: 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239
Query: 107 IGVI---ENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKL 163
+ + D L L+L + ++Q+ L VL+L NR++ D L ++
Sbjct: 240 LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK-GLPAKLSVLDLSYNRLDRNPSPDELPQV 298
Query: 164 ELFNIAANRI 173
++ N
Sbjct: 299 GNLSLKGNPF 308
Score = 44.9 bits (106), Expect = 2e-05
Identities = 26/136 (19%), Positives = 41/136 (30%), Gaps = 32/136 (23%)
Query: 94 MENLVELDLSMNHIGVIENLDQLVC------LEKLDLGYNRIEQIQG-----LDTLVNLK 142
L LDLS N L +C L+ L L +E G V L+
Sbjct: 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ 231
Query: 143 VLNLKMNRIETI---EGLDHLEKLELFNIAANRIQS------------------LASLVY 181
L+L N + D +L N++ ++ L
Sbjct: 232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPS 291
Query: 182 LRRFKHLGRLNIERNP 197
+G L+++ NP
Sbjct: 292 PDELPQVGNLSLKGNP 307
Score = 35.6 bits (82), Expect = 0.023
Identities = 15/121 (12%), Positives = 34/121 (28%), Gaps = 16/121 (13%)
Query: 92 WMMENLVELDLSMNHIGVIENLDQLVC------LEKLDLGYNRIEQI--QGLDTLVNLKV 143
+L L+L + + L+ L + + + L
Sbjct: 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST 177
Query: 144 LNLKMNRIETIEGLDH------LEKLELFNIAANRIQSLASLVY--LRRFKHLGRLNIER 195
L+L N GL L++ + +++ + + L L++
Sbjct: 178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH 237
Query: 196 N 196
N
Sbjct: 238 N 238
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 57.2 bits (138), Expect = 5e-09
Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 7/126 (5%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIET 153
L L +S N I ++ LE LDL +N++ +I VNLK L+L N +
Sbjct: 46 KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS-CHPTVNLKHLDLSFNAFDA 104
Query: 154 I---EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIA 210
+ + ++ +L+ ++ ++ S++ + L + +KE+ +G
Sbjct: 105 LPICKEFGNMSQLKFLGLSTTHLEKS-SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163
Query: 211 MVPQLQ 216
L
Sbjct: 164 NTESLH 169
Score = 56.8 bits (137), Expect = 6e-09
Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 5/105 (4%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
L++S N+I + + L L L + +NRI+ + L+ L+L N++
Sbjct: 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81
Query: 152 ETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
I L+ +++ N +L L L +
Sbjct: 82 VKIS-CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT 125
Score = 54.1 bits (130), Expect = 5e-08
Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Query: 81 RIKTLRKIENLWM-MENLVELDLSMNHIGVIEN---LDQLVCLEKLDLGYNRIEQIQGLD 136
++K L KI + M++L +LD+S N + E L L++ N +
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418
Query: 137 TLVNLKVLNLKMNRIETI-EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIER 195
+KVL+L N+I++I + + LE L+ N+A+N+++S+ + R L ++ +
Sbjct: 419 LPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGI-FDRLTSLQKIWLHT 477
Query: 196 NP 197
NP
Sbjct: 478 NP 479
Score = 51.8 bits (124), Expect = 2e-07
Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 7/144 (4%)
Query: 96 NLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQI---QGLDTLVNLKVLNLKMNRIE 152
L LDLS N + I + V L+ LDL +N + + + + LK L L +E
Sbjct: 70 ELEYLDLSHNKLVKI-SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128
Query: 153 TI--EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIA 210
+ HL ++ + L+ F L+I + + ++
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE-SLHIVFPTNKEFHFILDVSVK 187
Query: 211 MVPQLQCYNNHIILEDERRTALEQ 234
V L+ N +LED + +
Sbjct: 188 TVANLELSNIKCVLEDNKCSYFLS 211
Score = 51.0 bits (122), Expect = 5e-07
Identities = 19/111 (17%), Positives = 44/111 (39%), Gaps = 8/111 (7%)
Query: 94 MENLVELDLSMNHIGVIENL--DQLVCLEKLDLGYNRIEQI--QGLDTLVNLKVLNLKMN 149
N+ + +++ ++ L ++ LD N + + L L+ L L+MN
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358
Query: 150 RIETIEGL----DHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
+++ + + ++ L+ +I+ N + K L LN+ N
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409
Score = 49.9 bits (119), Expect = 1e-06
Identities = 15/83 (18%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 119 LEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQ 174
L++ N I ++ + +L L++L + NRI+ ++ ++LE +++ N++
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82
Query: 175 SLASLVYLRRFKHLGRLNIERNP 197
++ +L L++ N
Sbjct: 83 KISC----HPTVNLKHLDLSFNA 101
Score = 33.7 bits (77), Expect = 0.10
Identities = 15/168 (8%), Positives = 45/168 (26%), Gaps = 14/168 (8%)
Query: 40 INEDLLSKKGVISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVE 99
++ + LS+L + + + + + + +I L +
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT--LNNIETTWNSFIRILQLVWHTTVWY 251
Query: 100 LDLSMNHIGVIENLDQL----VCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKMNR 150
+S + + L+ L + + + N+ + N ++
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311
Query: 151 IETIEGL--DHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
+ L + + + N + L L ++ N
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMN 358
Score = 29.1 bits (65), Expect = 3.4
Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 14/140 (10%)
Query: 94 MENLVELDLSMNHI--GVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI 151
M L L LS H+ + + L + L + + + + L + +L +
Sbjct: 114 MSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173
Query: 152 ETIE-------GLDHLEKLELFNIAANRIQSLAS-----LVYLRRFKHLGRLNIERNPVC 199
E + + LEL NI + S L L+ L L +
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233
Query: 200 DKENVDGFAIAMVPQLQCYN 219
+ + + ++
Sbjct: 234 WNSFIRILQLVWHTTVWYFS 253
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 56.3 bits (135), Expect = 5e-09
Identities = 30/161 (18%), Positives = 60/161 (37%), Gaps = 11/161 (6%)
Query: 80 LRIKTLRKIENLWMMENLVELDLS-MNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG-- 134
R L + +L ENL EL + H+ +E L L L L + + + +
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75
Query: 135 LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLN 192
L LNL N +E++ + L L+ ++ N + +L +L+R++ G
Sbjct: 76 FHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLHCSCALRWLQRWEEEGLGG 134
Query: 193 IERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALE 233
+ + +A +P C + ++ +
Sbjct: 135 VPEQKLQCHGQGP---LAHMPNASCGVPTLKVQVPNASVDV 172
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 55.0 bits (133), Expect = 1e-08
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 22/108 (20%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKM 148
+ +LDL N + + + +L L L L N ++Q L L NL+ L +
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN---KLQTLPAGIFKELKNLETLWVTD 94
Query: 149 NRIETI-----EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRL 191
N+++ + + L +L +L L N+++SL V F L +L
Sbjct: 95 NKLQALPIGVFDQLVNLAELRLDR---NQLKSLPPRV----FDSLTKL 135
Score = 53.8 bits (130), Expect = 2e-08
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 13/110 (11%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
L L L+ N + + +L LE L + N+++ + D LVNL L L N++
Sbjct: 62 KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121
Query: 152 ETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
+++ L L L L N +QSL V+ + L L + N
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGY---NELQSLPKGVF-DKLTSLKELRLYNN 167
Score = 51.9 bits (125), Expect = 1e-07
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 19/114 (16%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKM 148
NL EL L N + + D L L L LGYN ++Q L D L +LK L L
Sbjct: 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN---ELQSLPKGVFDKLTSLKELRLYN 166
Query: 149 NRIETI-----EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
N+++ + + L L+ L+L N N+++ + + + L L ++ NP
Sbjct: 167 NQLKRVPEGAFDKLTELKTLKLDN---NQLKRVPEGAF-DSLEKLKMLQLQENP 216
Score = 35.3 bits (82), Expect = 0.028
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
Query: 139 VNLKVLNLKMNRIETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLN 192
+ K L+L+ N++ ++ L L L L + N++Q+L + + FK L L
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND---NKLQTLPAGI----FKELKNLE 88
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 54.2 bits (130), Expect = 2e-08
Identities = 31/153 (20%), Positives = 59/153 (38%), Gaps = 32/153 (20%)
Query: 80 LRIKTLRKIENLWMMENLVELDLSMNHIGVIENL-DQLVCLEKLDLGYNRIEQIQGLDTL 138
L +K LR +L V L+ + + + + L L+L NR+ ++ + ++
Sbjct: 132 LDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSI 191
Query: 139 V----NLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIE 194
V NLK+LNL N +++ LD ++ L+L L ++
Sbjct: 192 VQKAPNLKILNLSGNELKSERELDKIKGLKLEE-----------------------LWLD 228
Query: 195 RNPVC----DKENVDGFAIAMVPQLQCYNNHII 223
N +C D+ P+L + H +
Sbjct: 229 GNSLCDTFRDQSTYISAIRERFPKLLRLDGHEL 261
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 53.5 bits (129), Expect = 3e-08
Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 8/110 (7%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYN-RIEQIQG--LDTLVNLKVLNLKMNR 150
+ L L H+ I + L + ++ + + ++Q++ L + + ++ R
Sbjct: 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91
Query: 151 -IETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
+ I+ L L L+ I ++ L + L I NP
Sbjct: 92 NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP 141
Score = 43.1 bits (102), Expect = 7e-05
Identities = 20/126 (15%), Positives = 46/126 (36%), Gaps = 11/126 (8%)
Query: 51 ISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVI 110
I L + + T + + L N + ++ + + L L N +
Sbjct: 112 IFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV 171
Query: 111 ENLD-QLVCLEKLDLGYNR-IEQI-----QGLDTLVNLKVLNLKMNRIETI--EGLDHLE 161
+ L+ + L N+ + I G+ + +L++ + + +GL+HL+
Sbjct: 172 QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS--GPSLLDVSQTSVTALPSKGLEHLK 229
Query: 162 KLELFN 167
+L N
Sbjct: 230 ELIARN 235
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 54.9 bits (132), Expect = 3e-08
Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 6/110 (5%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIET 153
L L LS N I ++ LE LD+ +NR++ I + +L+ L+L N +
Sbjct: 77 ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS-CCPMASLRHLDLSFNDFDV 135
Query: 154 I---EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCD 200
+ + +L KL ++A + + L L L++ +
Sbjct: 136 LPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKG 185
Score = 54.5 bits (131), Expect = 3e-08
Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 9/103 (8%)
Query: 100 LDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETI- 154
L LS N I + + L L L L +NRI + +L+ L++ NR++ I
Sbjct: 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS 116
Query: 155 -EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
+ L L+L N L L L +
Sbjct: 117 CCPMASLRHLDLSF---NDFDVLPVCKEFGNLTKLTFLGLSAA 156
Score = 50.3 bits (120), Expect = 7e-07
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 119 LEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQ 174
+ L L N I +++ + L L+VL L NRI +++ + LE +++ NR+Q
Sbjct: 54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113
Query: 175 SLASLVYLRRFKHLGRLNIERNP 197
+++ L L++ N
Sbjct: 114 NISC----CPMASLRHLDLSFND 132
Score = 50.3 bits (120), Expect = 7e-07
Identities = 23/156 (14%), Positives = 51/156 (32%), Gaps = 10/156 (6%)
Query: 51 ISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENL--WMMENLVELDLSMNHIG 108
I ++ + K + +++ + + + + LS++
Sbjct: 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP 342
Query: 109 VIENL--DQLVCLEKLDLGYNRIEQI--QGLDTLVNLKVLNLKMNRIETIEG----LDHL 160
I + L+ N QG TL L+ L L+ N ++ ++
Sbjct: 343 FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM 402
Query: 161 EKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
LE +++ N + S A + + LN+ N
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438
Score = 49.5 bits (118), Expect = 1e-06
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 95 ENLVELDLSMNHI--GVIENLDQLVCLEKLDLGYNRIEQI-QGLDTLVNLKVLNLKMNRI 151
E+++ L+LS N + V L ++ LDL NRI I + + L L+ LN+ N++
Sbjct: 428 ESILVLNLSSNMLTGSVFRCLPPK--VKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL 485
Query: 152 ETI-----EGLDHLEKLELFN 167
+++ + L L+ + L +
Sbjct: 486 KSVPDGVFDRLTSLQYIWLHD 506
Score = 46.4 bits (110), Expect = 1e-05
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 94 MENLVELDLSMNHI--GVIENLDQLVC-LEKLDLGYNRIEQIQGLDTLV-NLKVLNLKMN 149
M +L LD+S+N + + + L+L N + L +KVL+L N
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV-FRCLPPKVKVLDLHNN 460
Query: 150 RIETI-EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
RI +I + + HL+ L+ N+A+N+++S+ V R L + + NP
Sbjct: 461 RIMSIPKDVTHLQALQELNVASNQLKSVPDGV-FDRLTSLQYIWLHDNP 508
Score = 33.3 bits (76), Expect = 0.17
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 140 NLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRL 191
K L+L N I + + L +L + ++ NRI+SL V F L
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV----FLFNQDL 102
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 52.3 bits (126), Expect = 3e-08
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 99 ELDLSMNHIGVIEN---LDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKMNR 150
EL L+ N +G I + +L L KL+L N Q+ G+ + +++ L L N+
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRN---QLTGIEPNAFEGASHIQELQLGENK 89
Query: 151 IETI-EGL-DHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
I+ I + L +L+ N+ N+I + + L LN+ NP
Sbjct: 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF-EHLNSLTSLNLASNP 137
Score = 43.8 bits (104), Expect = 3e-05
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 120 EKLDLGYNRIEQIQG---LDTLVNLKVLNLKMNRIETIE-GL-DHLEKLELFNIAANRIQ 174
+L L N + +I L +L L LK N++ IE + ++ + N+I+
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 175 SLASLVYLRRFKHLGRLNI 193
+++ + F L +L
Sbjct: 92 EISNKM----FLGLHQLKT 106
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 52.9 bits (127), Expect = 7e-08
Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 9/110 (8%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDT---LVNLKVLNL-KMN 149
N +EL + + VI+ LEK+++ N + ++ D L L + + K N
Sbjct: 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90
Query: 150 RIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
+ I +L L+ I+ I+ L + + + L+I+ N
Sbjct: 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ-KVLLDIQDNI 139
Score = 51.8 bits (124), Expect = 2e-07
Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 13/112 (11%)
Query: 96 NLVELDLSMNHIGVIENL--DQLVCLEKLDLGYN-RIEQI-----QGLDTLVNLKVLNLK 147
NL L +S I + ++ + LD+ N I I GL +L L
Sbjct: 105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL--SFESVILWLN 162
Query: 148 MNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
N I+ I + + EL N ++ L + V L+I R
Sbjct: 163 KNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV-FHGASGPVILDISRTR 213
Score = 48.3 bits (115), Expect = 2e-06
Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 30/146 (20%)
Query: 51 ISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVI 110
IS + L + + LQ L N+ I T+ + + + V L L+ N I I
Sbjct: 111 ISNTGIKHLPDVHKI-HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169
Query: 111 EN--------------------------LDQLVCLEKLDLGYNRIEQIQ--GLDTLVNLK 142
N LD+ RI + GL+ L L+
Sbjct: 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR 229
Query: 143 VLNL-KMNRIETIEGLDHLEKLELFN 167
+ + ++ T+E L L + L
Sbjct: 230 ARSTYNLKKLPTLEKLVALMEASLTY 255
Score = 28.6 bits (64), Expect = 3.6
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 54 NLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLR--KIENL--WMMENLVELD-LSMNHIG 108
L L N E+L A I + +I +L + +ENL +L S ++
Sbjct: 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237
Query: 109 VIENLDQLVCLEKLDLGYNR 128
+ L++LV L + L Y
Sbjct: 238 KLPTLEKLVALMEASLTYPS 257
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 53.0 bits (127), Expect = 1e-07
Identities = 41/204 (20%), Positives = 74/204 (36%), Gaps = 34/204 (16%)
Query: 95 ENLVELDLSMNHIGV----IENLDQLVC--------------LEKLDLGYNRIEQIQGLD 136
L EL +S N + L +L L++L + NR+ +
Sbjct: 181 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP--V 238
Query: 137 TLVNLKVLNLKMNRIETI-EGLDHLEKLELFNIAANRIQSL-ASLVYLRRFKHLGRLNIE 194
LK L + NR+ ++ L L ++ N++ L SL++L +N+E
Sbjct: 239 LPSELKELMVSGNRLTSLPMLPSGLLSLSVYR---NQLTRLPESLIHLSS---ETTVNLE 292
Query: 195 RNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYDVRTETLKDLMVQRERQ 254
NP+ A+ + Y+ II D + + + L+ RE +
Sbjct: 293 GNPL---SERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGE 349
Query: 255 NALASQRKS---EEKSKAFVENLE 275
A A + E+ + AF L+
Sbjct: 350 PAPADRWHMFGQEDNADAFSLFLD 373
Score = 53.0 bits (127), Expect = 1e-07
Identities = 18/120 (15%), Positives = 44/120 (36%), Gaps = 15/120 (12%)
Query: 79 NLRIKTLRKIENLWMMENLVELDLSMNHIGVI-ENLDQLVCLEKLDLGYNRIEQIQGLDT 137
R ++K+ + L++ + + + + L + L + N + +
Sbjct: 25 RGRAAVVQKMRA-CLNNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTSLP--AL 79
Query: 138 LVNLKVLNLKMNRIETI-EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
L+ L + N++ ++ L +L +F+ + +L S L +L I N
Sbjct: 80 PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGN 131
Score = 39.5 bits (92), Expect = 0.002
Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 3/102 (2%)
Query: 94 MENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQI-QGLDTLVNLKVLNLKMNRIE 152
L EL +S N + + L L L + N++ ++ + L L + +NL+ N +
Sbjct: 240 PSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 297
Query: 153 TIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIE 194
E + I+ + R L
Sbjct: 298 ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA 339
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 52.7 bits (126), Expect = 1e-07
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 13/103 (12%)
Query: 96 NLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETI- 154
+ L+++ N + + + LE LD NR+ + + +LK L++ N++ +
Sbjct: 81 QITVLEITQNALISL--PELPASLEYLDACDNRLSTL--PELPASLKHLDVDNNQLTMLP 136
Query: 155 EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
E LE + N N++ L L L L++ N
Sbjct: 137 ELPALLEYINADN---NQLTMLPEL-----PTSLEVLSVRNNQ 171
Score = 47.3 bits (112), Expect = 6e-06
Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 19/132 (14%)
Query: 51 ISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVI 110
+ N L++L E L E + N ++ L + + +L L + N + +
Sbjct: 127 VDNNQLTMLPELPALLEYINAD------NNQLTMLPE-----LPTSLEVLSVRNNQLTFL 175
Query: 111 ENLDQLVCLEKLDLGYNRIEQI-QGLDTLVNLK----VLNLKMNRIETI-EGLDHLEKLE 164
+ LE LD+ N +E + + + + NRI I E + L+
Sbjct: 176 P--ELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTC 233
Query: 165 LFNIAANRIQSL 176
+ N + S
Sbjct: 234 TIILEDNPLSSR 245
Score = 31.5 bits (71), Expect = 0.61
Identities = 15/106 (14%), Positives = 27/106 (25%), Gaps = 15/106 (14%)
Query: 98 VELDLSMNHI-----GVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIE 152
+ + N I D+ N + + L L +
Sbjct: 13 LSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS 72
Query: 153 TI--EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
++ + LE+ N + SL L L L+ N
Sbjct: 73 SLPDNLPPQITVLEITQ---NALISLPEL-----PASLEYLDACDN 110
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 50.0 bits (120), Expect = 2e-07
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Query: 99 ELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKMNRIE 152
EL L N ++ L L +DL N +I L + L L L NR+
Sbjct: 35 ELYLDGNQFTLVPKELSNYKHLTLIDLSNN---RISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 153 TI-EGL-DHLEKLELFNIAANRIQSL 176
I D L+ L L ++ N I +
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDISVV 117
Score = 49.2 bits (118), Expect = 3e-07
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKM 148
+L +DLS N I + N + L L L YN +++ + D L +L++L+L
Sbjct: 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN---RLRCIPPRTFDGLKSLRLLSLHG 111
Query: 149 NRIETI-EGL-DHLEKLELFNIAAN 171
N I + EG + L L I AN
Sbjct: 112 NDISVVPEGAFNDLSALSHLAIGAN 136
Score = 46.5 bits (111), Expect = 3e-06
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 120 EKLDLGYNRIEQIQG-LDTLVNLKVLNLKMNRIETIE-GL-DHLEKLELFNIAANRIQSL 176
+L L N+ + L +L +++L NRI T+ ++ +L ++ NR++ +
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 177 ASLVYLRRFKHLGRLNI 193
F L L +
Sbjct: 94 PPRT----FDGLKSLRL 106
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 50.7 bits (122), Expect = 6e-07
Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 18/113 (15%)
Query: 88 IENLWMMENLVELDLSMNHI-GVI---ENLDQLVCLEKLDLGYNRIE---QIQGLDTLVN 140
+ +L LDLS N + G + +L L+ L++ N ++ ++ G L +
Sbjct: 93 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152
Query: 141 LKVLNLKMNRIE-----TIEGLDHLEKLELFNIAANR------IQSLASLVYL 182
L+VL+L N I D +L+ I+ N+ + +L +L
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFL 205
Score = 49.1 bits (118), Expect = 2e-06
Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 17/110 (15%)
Query: 89 ENLWMMENLVELDLSMNHI---GVIENLDQLVCLEKLDLGYNRIE-----QIQGLDTLVN 140
+L L L++S N + G + +L LE LDL N I D
Sbjct: 120 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179
Query: 141 LKVLNLKMNRIE-TIEGLDHLEKLELFNIAANR-------IQSLASLVYL 182
LK L + N+I ++ + LE ++++N + ++L +L
Sbjct: 180 LKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHL 228
Score = 48.4 bits (116), Expect = 3e-06
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 10/117 (8%)
Query: 90 NLWMMENLVELDLSMNHI-GVIENLDQLVCLEKLDLGYNR----IEQIQGLDTLVNLKVL 144
+L + L L LS +HI G + L LDL N + + L + LK L
Sbjct: 72 SLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFL 131
Query: 145 NLKMNRIE---TIEGLDHLEKLELFNIAANRIQS--LASLVYLRRFKHLGRLNIERN 196
N+ N ++ + G L LE+ +++AN I + V L L I N
Sbjct: 132 NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188
Score = 47.6 bits (114), Expect = 5e-06
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 89 ENLWMMENLVELDLSMNHI-GVI-ENLDQLVCLEKLDLGYNRIE-QI-QGLDTLVNLKVL 144
+L + L +L L +N + G I + L + LE L L +N + +I GL NL +
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495
Query: 145 NLKMNRIE-TI-EGLDHLEKLELFNIAANR--------IQSLASLVYLR 183
+L NR+ I + + LE L + ++ N + SL++L
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544
Score = 46.8 bits (112), Expect = 1e-05
Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 14/110 (12%)
Query: 88 IENLWMMENLVELDLSMNHI-GVI----ENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLK 142
+ + +L LDLS N I G D L+ L + N+I + VNL+
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLE 203
Query: 143 VLNLKMNRIE-TIEGLDHLEKLELFNIAANR--------IQSLASLVYLR 183
L++ N I L L+ +I+ N+ I + L L
Sbjct: 204 FLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253
Score = 46.1 bits (110), Expect = 2e-05
Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 11/116 (9%)
Query: 89 ENLWMMENLVELDLSMNHI-GVIENLDQLVCLEKLDLGYNRI-----EQIQGLDTLVNLK 142
+ L L++S N G I L L+ L L N+ + + G L
Sbjct: 241 RAISTCTELKLLNISSNQFVGPIPP-LPLKSLQYLSLAENKFTGEIPDFLSGA--CDTLT 297
Query: 143 VLNLKMNRIE-TI-EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
L+L N + LE +++N + L + + L L++ N
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Score = 44.9 bits (107), Expect = 4e-05
Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 23/110 (20%)
Query: 91 LWMMENLVELDLSMNHI-GVI-ENLDQLVCLEKLDLGYNRIEQIQG---LDTLVNLKVLN 145
L L LD+S N + G + L+ L++ N Q G L +L+ L+
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN---QFVGPIPPLPLKSLQYLS 275
Query: 146 LKMNRI-----ETIEGLDHLEKLELFNIAANR--------IQSLASLVYL 182
L N+ + + G + L +++ N S + L L
Sbjct: 276 LAENKFTGEIPDFLSG--ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323
Score = 42.2 bits (100), Expect = 2e-04
Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 22/114 (19%)
Query: 89 ENLWMMENLVELDLSMNHI-GVI--ENLDQLVCLEKLDLGYNRI-----EQIQGLDTLVN 140
L L LS N+ G + + L ++ L+ LDL +N E + L +
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL--SAS 369
Query: 141 LKVLNLKMNRIE-TIE---GLDHLEKLELFNIAANR--------IQSLASLVYL 182
L L+L N I + L+ + N + + + LV L
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423
Score = 41.4 bits (98), Expect = 5e-04
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 93 MMENLVELDLSMNHI-GVI-ENLDQLVCLEKLDLGYNRIE-QI-QGLDTLVNLKVLNLKM 148
M L L+L N I G I + + L L LDL N+++ +I Q + L L ++L
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713
Query: 149 NRIE 152
N +
Sbjct: 714 NNLS 717
Score = 41.0 bits (97), Expect = 7e-04
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 89 ENLWMMENLVELDLSMNHI-GVI-ENLDQLVCLEKLDLGYNRIE-QI-QGLDTLVNLKVL 144
+++ LD+S N + G I + + + L L+LG+N I I + L L +L
Sbjct: 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685
Query: 145 NLKMNRIE-TI-EGLDHLEKLELFNIAANRIQ 174
+L N+++ I + + L L +++ N +
Sbjct: 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
Score = 29.9 bits (68), Expect = 2.0
Identities = 23/142 (16%), Positives = 43/142 (30%), Gaps = 41/142 (28%)
Query: 89 ENLWMMENLVELDLSMNHI-GVI---------------------ENLDQLVCLEKLDLGY 126
L +L+ LDL+ N G I + ++
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591
Query: 127 NRIEQIQG-----LDTLVNLKVLNLKMNRI--ETIEGLDHLEKLELFNIAANRI-----Q 174
N + + QG L+ L N+ T D+ + +++ N + +
Sbjct: 592 NLL-EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650
Query: 175 SLASLVYLRRFKHLGRLNIERN 196
+ S+ YL LN+ N
Sbjct: 651 EIGSMPYLF------ILNLGHN 666
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 48.5 bits (116), Expect = 9e-07
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 17/91 (18%)
Query: 96 NLVELDLSMNHI-----GVIENLDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLN 145
NL EL L N + GV D L L LDLG N Q+ L D LV+LK L
Sbjct: 65 NLKELYLGSNQLGALPVGV---FDSLTQLTVLDLGTN---QLTVLPSAVFDRLVHLKELF 118
Query: 146 LKMNRIETI-EGLDHLEKLELFNIAANRIQS 175
+ N++ + G++ L L + N+++S
Sbjct: 119 MCCNKLTELPRGIERLTHLTHLALDQNQLKS 149
Score = 45.5 bits (108), Expect = 9e-06
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 99 ELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKMNRI 151
L L N I +E D L+ L++L LG N Q+ L D+L L VL+L N++
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSN---QLGALPVGVFDSLTQLTVLDLGTNQL 100
Query: 152 ETIE-GL-DHLEKLELFNIAANRIQSL 176
+ + D L L+ + N++ L
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLTEL 127
Score = 39.7 bits (93), Expect = 8e-04
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 120 EKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE-GL-DHLEKLELFNIAANRIQS 175
+ L L N+I +++ D+L+NLK L L N++ + G+ D L +L + ++ N++
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 176 LASLVYLRRFKHLGRL 191
L S V F L L
Sbjct: 103 LPSAV----FDRLVHL 114
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 48.7 bits (117), Expect = 1e-06
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 96 NLVELDLSMNHI-GVI-ENLDQLVCLEKLDLGYNRIE-QIQGLDTLVNLKVLNLKMNRIE 152
NL +DLS N + G +K+ L N + + + NL L+L+ NRI
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257
Query: 153 -TI-EGLDHLEKLELFNIAANRIQ 174
T+ +GL L+ L N++ N +
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLC 281
Score = 45.2 bits (108), Expect = 2e-05
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Query: 91 LWMMENLVELDLSMNHI-GVIENLDQLVCLEKLDLGYNRIE-QI-QGLDTLVNLKVLNLK 147
+N ++ L+ N + + + L LDL NRI + QGL L L LN+
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276
Query: 148 MNRIE----TIEGLDHLEKLELFN 167
N + L + N
Sbjct: 277 FNNLCGEIPQGGNLQRFDVSAYAN 300
Score = 40.2 bits (95), Expect = 8e-04
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 19/118 (16%)
Query: 91 LWMMENLVELDLSMNHI-GVI-ENLDQLVCLEKLDLGYNRIE-QI-QGLDTLVNLKVLNL 146
+ + L L ++ ++ G I + L Q+ L LD YN + + + +L NL +
Sbjct: 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156
Query: 147 KMNRIE-TI-EGLDHLEKL-ELFNIAANRI-----QSLASLVYLRRFKHLGRLNIERN 196
NRI I + KL I+ NR+ + A+L +L +++ RN
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-------NLAFVDLSRN 207
Score = 38.7 bits (91), Expect = 0.002
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 88 IENLWMMENLVELDLSMNHI-GVI-ENLDQLVCLEKLDLGYNRIE-QIQGLDTLVNLKVL 144
+ + + +NL LDL N I G + + L QL L L++ +N + +I L V
Sbjct: 237 LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296
Query: 145 NLKMNR 150
N+
Sbjct: 297 AYANNK 302
Score = 36.0 bits (84), Expect = 0.015
Identities = 23/131 (17%), Positives = 41/131 (31%), Gaps = 37/131 (28%)
Query: 89 ENLWMMENLVELDLSMNHI-GVI-ENLDQLVCLEKLDLGYNRI-----EQIQGLDTLV-- 139
+ L ++ LV LD S N + G + ++ L L + NRI + L
Sbjct: 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178
Query: 140 -------------------NLKVLNLKMNRIE-TI-EGLDHLEKLELFNIAANRIQ---- 174
NL ++L N +E + + ++A N +
Sbjct: 179 MTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238
Query: 175 ---SLASLVYL 182
+L L
Sbjct: 239 KVGLSKNLNGL 249
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 47.4 bits (113), Expect = 3e-06
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 19/113 (16%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKM 148
L L+L N + + D L L L L N Q+ L D L L L L
Sbjct: 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN---QLASLPLGVFDHLTQLDKLYLGG 116
Query: 149 NRIETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
N+++++ L L++L L N++QS+ + + + +L L++ N
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNT---NQLQSIPAGAF-DKLTNLQTLSLSTN 165
Score = 43.5 bits (103), Expect = 5e-05
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 15/84 (17%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKM 148
L +L L N + + + D+L L++L L N Q+Q + D L NL+ L+L
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN---QLQSIPAGAFDKLTNLQTLSLST 164
Query: 149 NRIETI--EGLDHLEKLE---LFN 167
N+++++ D L KL+ LF
Sbjct: 165 NQLQSVPHGAFDRLGKLQTITLFG 188
Score = 42.4 bits (100), Expect = 1e-04
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 120 EKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQS 175
EKLDL + + L L LNL N+++T+ D L +L +A N++ S
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 176 LASLVYLRRFKHLGRLNIERN 196
L V+ + L +L + N
Sbjct: 98 LPLGVFDHLTQ-LDKLYLGGN 117
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 45.3 bits (108), Expect = 6e-06
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 100 LDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKMNRIE 152
L+L N + + + D+L L KL L N QIQ L D L L +L L N+++
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQN---QIQSLPDGVFDKLTKLTILYLHENKLQ 89
Query: 153 TI-EGL-DHLEKLELFNIAANRIQS 175
++ G+ D L +L+ + N+++S
Sbjct: 90 SLPNGVFDKLTQLKELALDTNQLKS 114
Score = 40.7 bits (96), Expect = 2e-04
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 11/84 (13%)
Query: 120 EKLDLGYNRIEQIQGL-----DTLVNLKVLNLKMNRIETI-EGL-DHLEKLELFNIAANR 172
+L+L N ++Q L D L L L+L N+I+++ +G+ D L KL + + N+
Sbjct: 31 TRLELESN---KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 173 IQSLASLVYLRRFKHLGRLNIERN 196
+QSL + V+ + L L ++ N
Sbjct: 88 LQSLPNGVF-DKLTQLKELALDTN 110
Score = 39.9 bits (94), Expect = 5e-04
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 21/87 (24%)
Query: 96 NLVELDLSMNHI-----GVIENLDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLN 145
L +L LS N I GV D+L L L L N ++Q L D L LK L
Sbjct: 53 QLTKLSLSQNQIQSLPDGV---FDKLTKLTILYLHEN---KLQSLPNGVFDKLTQLKELA 106
Query: 146 LKMNRIETI-EG-LDHLEKLE---LFN 167
L N+++++ +G D L L+ L
Sbjct: 107 LDTNQLKSVPDGIFDRLTSLQKIWLHT 133
Score = 29.5 bits (67), Expect = 1.2
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 139 VNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
+ L L+ N+++++ D L +L +++ N+IQSL V+ + L L + N
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF-DKLTKLTILYLHEN 86
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 43.9 bits (104), Expect = 2e-05
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 99 ELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKMNRI 151
LDL N + + N D+L L +L LG N ++Q L + L +L LNL N++
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGN---KLQSLPNGVFNKLTSLTYLNLSTNQL 88
Query: 152 ETIEG--LDHLEKLELFNIAANRIQSL 176
+++ D L +L+ + N++QSL
Sbjct: 89 QSLPNGVFDKLTQLKELALNTNQLQSL 115
Score = 40.4 bits (95), Expect = 4e-04
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 15/84 (17%)
Query: 96 NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKM 148
+L L+LS N + + N D+L L++L L N Q+Q L D L LK L L
Sbjct: 77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN---QLQSLPDGVFDKLTQLKDLRLYQ 133
Query: 149 NRIETI-EG-LDHLEKLE---LFN 167
N+++++ +G D L L+ L +
Sbjct: 134 NQLKSVPDGVFDRLTSLQYIWLHD 157
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 44.3 bits (105), Expect = 5e-05
Identities = 36/231 (15%), Positives = 66/231 (28%), Gaps = 44/231 (19%)
Query: 10 IKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDL----LSKKGVISENLLSLLQESTNL 65
I+ L D E K++ VL ++ L + + L + +L
Sbjct: 6 IEGKSLKLDAITTEDE-KSVFAVLLEDDSVKEIVLSGNTIGTEAARW--LSENIASKKDL 62
Query: 66 AE-KLQIYKLIKAVNLRIKTLRKI-ENLWMMENLVELDLSMNHIGVI------ENLDQLV 117
+ + + + LR + + L L + LS N G + L +
Sbjct: 63 EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122
Query: 118 CLEKLDLGYNRI---------------EQIQGLDTLVNLKVLNLKMNRIETI------EG 156
LE L L N + + L+ + NR+E +
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182
Query: 157 LDHLEKLELFNIAANRIQS------LASLVYLRRFKHLGRLNIERNPVCDK 201
L + N I+ L L + L L+++ N
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEG--LAYCQELKVLDLQDNTFTHL 231
Score = 38.2 bits (89), Expect = 0.004
Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 29/128 (22%)
Query: 96 NLVELDLSMNHIGVI-------ENLDQLVCLEKLDLGYNRIEQI------QGLDTLVNLK 142
L + + N I E L L+ LDL N + L + NL+
Sbjct: 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247
Query: 143 VLNLKMNRIETIEGLDHL---------EKLELFNIAANRI-----QSLASLVYLRRFKHL 188
L L + G + L+ + N I ++L +++ + L
Sbjct: 248 ELGLNDCLLSA-RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI-DEKMPDL 305
Query: 189 GRLNIERN 196
L + N
Sbjct: 306 LFLELNGN 313
Score = 32.0 bits (73), Expect = 0.31
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 17/72 (23%)
Query: 96 NLVELDLSMNHIG------VIENLDQLV--CLEKLDLGYNRIEQIQGLDTLV-------- 139
NL EL L+ + V++ +L L+ L L YN IE + TL
Sbjct: 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL-DAVRTLKTVIDEKMP 303
Query: 140 NLKVLNLKMNRI 151
+L L L NR
Sbjct: 304 DLLFLELNGNRF 315
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 44.2 bits (105), Expect = 6e-05
Identities = 28/132 (21%), Positives = 44/132 (33%), Gaps = 29/132 (21%)
Query: 96 NLVELDLSMNHIGVI-------ENLDQLVCLEKLDLGYNRIEQI------QGLDTLVNLK 142
+L EL L N +G + L L L + I + L +LK
Sbjct: 228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287
Query: 143 VLNLKMNRIETIEGLDHL--------EKLELFNIAANRI-----QSLASLVYLRRFKHLG 189
L+L N + EG L +LE + + +S+ L + + L
Sbjct: 288 ELSLAGNELGD-EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV--LAQNRFLL 344
Query: 190 RLNIERNPVCDK 201
L I N + D
Sbjct: 345 ELQISNNRLEDA 356
Score = 39.6 bits (93), Expect = 0.001
Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 23/130 (17%)
Query: 93 MMENLVELDLSMNHI---GVIENLDQLVCLEKLDLGYNRIEQI------QGLDTLVNLKV 143
M ++ LD+ + E L L + + L + + L L
Sbjct: 1 MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60
Query: 144 LNLKMNRIETI------EGLDH----LEKLELFN--IAANRIQSLASLVYLRRFKHLGRL 191
LNL+ N + + +GL ++KL L N + L+S LR L L
Sbjct: 61 LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST--LRTLPTLQEL 118
Query: 192 NIERNPVCDK 201
++ N + D
Sbjct: 119 HLSDNLLGDA 128
Score = 38.4 bits (90), Expect = 0.003
Identities = 31/131 (23%), Positives = 47/131 (35%), Gaps = 27/131 (20%)
Query: 96 NLVELDLSMNHIG------VIENLDQLVC-LEKLDLGYNRI-----EQI-QGLDTLVNLK 142
L EL LS N +G + E L C LEKL L Y + E + L + K
Sbjct: 114 TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 173
Query: 143 VLNLKMNRIETI------EGLDHLE-KLELFNIAANRI-----QSLASLVYLRRFKHLGR 190
L + N I +GL +LE + + + + L + + L
Sbjct: 174 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI--VASKASLRE 231
Query: 191 LNIERNPVCDK 201
L + N + D
Sbjct: 232 LALGSNKLGDV 242
Score = 35.3 bits (82), Expect = 0.032
Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 16/86 (18%)
Query: 96 NLVELDLSMNHIG------VIENLDQLVCLEKLDLGYNRIEQIQGLDTLV--------NL 141
L L L+ + + L L +LDL N + G+ LV L
Sbjct: 371 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD-AGILQLVESVRQPGCLL 429
Query: 142 KVLNLKMNRIETIEGLDHLEKLELFN 167
+ L L + E D L+ LE
Sbjct: 430 EQLVLYDIYW-SEEMEDRLQALEKDK 454
Score = 29.5 bits (67), Expect = 2.2
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
Query: 96 NLVELDLSMNHIG------VIENLDQLVC-LEKLDLGYNRI--EQIQGLDTLV----NLK 142
+L ELDLS N +G ++E++ Q C LE+L L E L L +L+
Sbjct: 399 SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 458
Query: 143 VLN 145
V++
Sbjct: 459 VIS 461
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 40.7 bits (96), Expect = 2e-04
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 15/81 (18%)
Query: 99 ELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKMNRI 151
L L N I +E D+L L +LDL N Q+ L D L L L+L N++
Sbjct: 34 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNN---QLTVLPAGVFDKLTQLTQLSLNDNQL 90
Query: 152 ETI-EG-LDHLEKLE---LFN 167
++I G D+L+ L L N
Sbjct: 91 KSIPRGAFDNLKSLTHIWLLN 111
Score = 37.2 bits (87), Expect = 0.003
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 120 EKLDLGYNRIEQIQGL-----DTLVNLKVLNLKMNRIETI-EGL-DHLEKLELFNIAANR 172
+ L L N QI L D L L L+L N++ + G+ D L +L ++ N+
Sbjct: 33 QVLYLYDN---QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 173 IQSL 176
++S+
Sbjct: 90 LKSI 93
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 3e-04
Identities = 77/494 (15%), Positives = 148/494 (29%), Gaps = 163/494 (32%)
Query: 13 IGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQIY 72
+G + + S + QVL L + + LLQE+ ++
Sbjct: 65 LGYVSSLV-EPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL-AAKLLQEND--TTLVKTK 120
Query: 73 KLIKA-VNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQ 131
+LIK + RI R + ++ L + G ++
Sbjct: 121 ELIKNYITARIMAKRPFDK--------------------KSNSAL--FRAVGEGNAQLVA 158
Query: 132 I---QGLDTLVNLKVLNLKMNRIETIEGLDHLEKL---------ELFNIAANRIQSLASL 179
I QG T + + L L +L +A + L
Sbjct: 159 IFGGQG-----------------NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 180 VYLRRFKHLGR-LNIE---RNPVCDKENVDGFAIAMV--P-----QLQCYNNHIILEDER 228
L K + LNI NP + + D + P QL Y + +
Sbjct: 202 T-LDAEKVFTQGLNILEWLENPS-NTPDKDYLLSIPISCPLIGVIQLAHY--VVTAK--- 254
Query: 229 RTALEQHMYDVR------TETLKDLMVQRERQNALA-SQRKSEEKSKAFVENLEG--DFL 279
L ++R T + L+ A+A ++ S E +F ++ L
Sbjct: 255 --LLGFTPGELRSYLKGATGHSQGLVT------AVAIAETDSWE---SFFVSVRKAITVL 303
Query: 280 FNV----------------QFENDVEGQE-----MLKLCTIPTK-LGRSVAE-------- 309
F + E+ +E E ML + + + + V +
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 310 ------LYNNFKRDFLEVS---SKLYEFGTSQHSLR-QNEVDEFQAVYRALKLKSCHEAV 359
L N ++ + VS LY + + + +D+ + + KLK
Sbjct: 364 KQVEISLVNG-AKNLV-VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF----- 416
Query: 360 KNKTRY-RV----H-PMLYEILSNEEALDDALMNSF---GETMDV-LYAQEDA-----IT 404
R+ V H +L +++ D + N+ + + + +Y D ++
Sbjct: 417 --SNRFLPVASPFHSHLLVP--ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472
Query: 405 DNITSA---QIASL 415
+I+ I L
Sbjct: 473 GSISERIVDCIIRL 486
Score = 36.6 bits (84), Expect = 0.019
Identities = 33/175 (18%), Positives = 53/175 (30%), Gaps = 61/175 (34%)
Query: 13 IGLIKDR-----AGDESTLKNLAQVLQNAPAIINED----LLSK-KGVISENLL------ 56
I L+ +G +L L L+ A A D S+ K S L
Sbjct: 368 ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 57 --SLLQESTNL-------------AEKLQI--YKLIKAVNLRIKTLRKIENL-------- 91
LL +++L A+ +QI Y +LR+ + E +
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP 487
Query: 92 --WMMENLVELDLSMNHI-----GVIENLDQLVCLEKLDLGYNRIEQIQGLDTLV 139
W E + + HI G L L +R + G+ +V
Sbjct: 488 VKW--ETTTQFKAT--HILDFGPGGASGLGVLT---------HRNKDGTGVRVIV 529
Score = 33.9 bits (77), Expect = 0.14
Identities = 32/211 (15%), Positives = 66/211 (31%), Gaps = 68/211 (32%)
Query: 169 AANRIQSLASLVYLRRF-KHLGRLNIERNPVCDKENV-----DGFAIAMVPQLQCY---N 219
A + + A LV +F ++ L +E + V + V F CY N
Sbjct: 50 ADDEPTTPAELV--GKFLGYVSSL-VEPSKVGQFDQVLNLCLTEFE-------NCYLEGN 99
Query: 220 N-HII---LEDERRTALEQHMYDVRT----ETLKDLMVQRERQNALASQRKSEEKSKAFV 271
+ H + L E T L + ++ + ++ +AL + E ++
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF-RAVGEGNAQLVA 158
Query: 272 ENLEGDFLFNVQFENDVEGQ--------EMLKLCTIPTKLGRSVAELYNNFKRDFLEVSS 323
+F GQ E+ R + + Y+ D ++ S+
Sbjct: 159 -------IFG--------GQGNTDDYFEEL-----------RDLYQTYHVLVGDLIKFSA 192
Query: 324 KLYEFGTSQHSLRQNEVDEFQAVYRALKLKS 354
+ L + +D + + L +
Sbjct: 193 ETLS------ELIRTTLDAEKVFTQGLNILE 217
Score = 30.8 bits (69), Expect = 1.1
Identities = 28/167 (16%), Positives = 49/167 (29%), Gaps = 62/167 (37%)
Query: 173 IQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMV-PQLQCYNNHIILEDERRTA 231
I+SL +V+ R G P D+ + + + P E A
Sbjct: 1779 IESLVEVVFYR-----GMTMQVAVPR-DELGRSNYGMIAINPGRVA----ASFSQE---A 1825
Query: 232 LEQHMYDVRTETLKDLMVQRERQNALASQRKSEEKSKAFVE--NLEGDFLFNVQFEN--- 286
L+ +V+R +R VE N +NV EN
Sbjct: 1826 LQY-------------VVER------VGKRTGW-----LVEIVN------YNV--ENQQY 1853
Query: 287 ----DVEGQEMLKLCTIPTKLGR---SVAELYNNFKRDFLEVSSKLY 326
D+ + + + + + EL + + EV L+
Sbjct: 1854 VAAGDLRALD--TVTNVLNFIKLQKIDIIELQKSLSLE--EVEGHLF 1896
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 40.3 bits (95), Expect = 3e-04
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 15/81 (18%)
Query: 99 ELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKMNRI 151
L L+ N I +E D LV L++L N ++ + D L L L+L N +
Sbjct: 37 RLWLNNNQITKLEPGVFDHLVNLQQLYFNSN---KLTAIPTGVFDKLTQLTQLDLNDNHL 93
Query: 152 ETI-EG-LDHLEKLE---LFN 167
++I G D+L+ L L+N
Sbjct: 94 KSIPRGAFDNLKSLTHIYLYN 114
Score = 30.3 bits (69), Expect = 0.61
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 139 VNLKVLNLKMNRIETIE-GL-DHLEKLELFNIAANRIQSLASLVYLRRFKHLGRL 191
+ + L L N+I +E G+ DHL L+ +N++ ++ + V F L +L
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGV----FDKLTQL 83
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 39.3 bits (92), Expect = 0.002
Identities = 17/128 (13%), Positives = 42/128 (32%), Gaps = 28/128 (21%)
Query: 96 NLVELDLSMNHIGVI------ENLDQLVCLEKLDLGYNRIEQI------QGLDTLVNLKV 143
++ L L +G LD+ L++L++ YN + +L++
Sbjct: 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLEL 243
Query: 144 LNLKMNRI---------ETIEGLDHLEKLELFNIAANRI-----QSLASLVYLRRFKHLG 189
L+L N + + + ++ + + L+ + R
Sbjct: 244 LHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEV--QRNLNSWD 301
Query: 190 RLNIERNP 197
R ++R+
Sbjct: 302 RARVQRHL 309
Score = 37.0 bits (86), Expect = 0.010
Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 26/132 (19%)
Query: 93 MMENLVELDLSMNHIG------VIENLDQLVC-LEKLDLGYNRIEQI------QGLDTLV 139
+ +L L +N +G + + L C + L L N + +GL
Sbjct: 124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT 183
Query: 140 NLKVLNLKMNRIETI------EGLDHLEKLELFNIAANRI-----QSLASLVYLRRFKHL 188
++ L+L + LD +L+ N+A N +LA R L
Sbjct: 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR--AAREHPSL 241
Query: 189 GRLNIERNPVCD 200
L++ N +
Sbjct: 242 ELLHLYFNELSS 253
Score = 30.1 bits (68), Expect = 1.5
Identities = 10/69 (14%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 93 MMENLVELDLSMNHIGVI------ENLDQLVC-LEKLDLGYNRI--EQIQGL-DTLVNLK 142
++ +L +L+L+ + + L L++++L ++ ++ L + +
Sbjct: 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR 129
Query: 143 VLNLKMNRI 151
L L++N +
Sbjct: 130 KLGLQLNSL 138
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 39.2 bits (90), Expect = 0.002
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 12/95 (12%)
Query: 79 NLRIKTLRKIENLWMMENLVELDLSMNHIG-----VIENLDQLVCLEKLDLGYNRIEQ-- 131
+ + R + + NL L + + D L LE +D+ +
Sbjct: 236 DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG 295
Query: 132 ----IQGLDTLVNLKVLNLKMNRIETIEGLDHLEK 162
+ +D + +LK +N+K N + + E L+K
Sbjct: 296 ARLLLDHVDKIKHLKFINMKYNYL-SDEMKKELQK 329
Score = 35.7 bits (81), Expect = 0.025
Identities = 15/95 (15%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 90 NLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRI-----EQIQGLDTLVNLKVL 144
L++ D MN + + D+ L+ L + E D L L+ +
Sbjct: 225 VLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETM 284
Query: 145 NLKMNRI------ETIEGLDHLEKLELFNIAANRI 173
++ + ++ +D ++ L+ N+ N +
Sbjct: 285 DISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 38.5 bits (90), Expect = 0.003
Identities = 16/101 (15%), Positives = 37/101 (36%), Gaps = 22/101 (21%)
Query: 96 NLVELDLSMNHIG------VIENLDQLVC-LEKLDLGYNRIEQ------IQGLDTLVNLK 142
++ LDLS N +G + + + L+L N + D+L +L+
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256
Query: 143 VLNLKMNRIETI---------EGLDHLEKLELFNIAANRIQ 174
+ L + ++ + +++K+ L + I
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297
Score = 31.6 bits (72), Expect = 0.42
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 17/80 (21%)
Query: 96 NLVELDLSMNHIG------VIENLDQLVC-LEKLDLGYNRIEQIQGLDTL--------VN 140
+ LDLS+N++ +I+ + L+L N + + D L N
Sbjct: 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGF-KNSDELVQILAAIPAN 81
Query: 141 LKVLNLKMNRIETIEGLDHL 160
+ LNL N + + D L
Sbjct: 82 VTSLNLSGNFLSY-KSSDEL 100
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 35.9 bits (83), Expect = 0.006
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 8/86 (9%)
Query: 139 VNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRR--FKHLGRLNIE 194
V+ L L N + + LD L L ++ AN + LV LR R
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAP-Y 89
Query: 195 RNPVCDK-ENVDGFAIAMVP--QLQC 217
R+ C + G + + +L+
Sbjct: 90 RDLRCVAPPALRGRLLPYLAEDELRA 115
Score = 29.8 bits (67), Expect = 0.66
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 119 LEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN 149
+L L N + + LD L L+ +L N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.4 bits (78), Expect = 0.035
Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 226 DERRTALEQHMYDVRTETLKDLMVQRERQ--NALASQRKSEEKSKAFVENLEGDFL 279
D +EQ + + L++ ++ Q + R +++ AF + + D +
Sbjct: 102 DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK---AFYQQPDADII 154
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 31.5 bits (71), Expect = 0.60
Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 21/138 (15%)
Query: 96 NLVELDLSMNHIGV--IENLDQLVC--LEKLDLGYNRIEQIQGLDTLV----NLKVLNLK 147
L + + ++ L + LE L L GL ++V +K L ++
Sbjct: 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLME 172
Query: 148 MNRIETIEG------LDHLEKLELFNIAANRIQ--SLASLVYL-RRFKHLGRLNIERNPV 198
+ +G H LE+ N S L + R + L + +
Sbjct: 173 ESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD--- 229
Query: 199 CDKENVDGFAIAMVPQLQ 216
+ + GF L+
Sbjct: 230 FEILELVGF-FKAAANLE 246
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 29.6 bits (67), Expect = 1.3
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 19/97 (19%)
Query: 97 LVELDLS-MNHIG------VIENLDQLVCLEKLDLGYNRI-----EQI-QGLDTLVNLKV 143
L E++L+ + +I E L ++K + R + + L LK
Sbjct: 38 LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKS 97
Query: 144 LNLKMNRIET------IEGLDHLEKLELFNIAANRIQ 174
LN++ N I +E L L I
Sbjct: 98 LNVESNFISGSGILALVEALQSNTSLIELRIDNQSQP 134
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.6
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 18/46 (39%)
Query: 312 NNFKRDFLEVSSKLYEFGTSQHSLRQNEVDEFQAVYRALKLKSCHE 357
K+ L+ S KLY ++ AL +K+ E
Sbjct: 20 QALKK--LQASLKLYADDSAP----------------ALAIKATME 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.366
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,056,628
Number of extensions: 366640
Number of successful extensions: 2667
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1000
Number of HSP's successfully gapped: 367
Length of query: 417
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 321
Effective length of database: 4,021,377
Effective search space: 1290862017
Effective search space used: 1290862017
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)